Citrus Sinensis ID: 020461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI
Secondary Structure (PSIPRED)
cccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEccccEEEEEEccccEEEEccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEcccccEEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEcc
Coil and Loop (DISEMBL)
mrpilmkgherpltylkynkdgdllfscakdhtptvwfadngerlgtyrghngavwccdvsrdsmtliTGSADQTAKLWnvetgaqlftfnfdsparsvdfavgdklavittdpfmelnSAIHVKRiardpadqggesvlilkgpqgrinravwgplnrtIISAGEDAIVRIWDTETGKLlkesdketghkkTITSLakaadgshfltgsldksaKLWDARTLELIKTYVterpvnavtmspLLDHVVlgggqdasavtttdhragkFEAKFFDKILQEEiggvkghfgpinalafnpdgksfssggedgyvrlhhfdpdyfniki
Flexible Loop (DISEMBL)
mrpilmkgherpltylKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLilkgpqgrinravwgpLNRTiisagedaivRIWDTETGkllkesdketghkktitslakaadgshfltgsldksakLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHhfdpdyfniki
Low Complexity Region (SEG)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI
Disordered region (IsUnstruct)
***********PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL***********************SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD********EDGYVRLHHFDPDYFN***
Disordered Region (DISOPRED)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI
Disordered Region (DISEMBL)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI
Disordered Region (DISPRO)
*RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q38884	328	Eukaryotic translation in	no	no	1.0	0.993	0.820	1e-156
Q7ZV55	325	Eukaryotic translation in	yes	no	0.987	0.990	0.464	3e-87
Q5EBE8	325	Eukaryotic translation in	yes	no	0.987	0.990	0.486	4e-87
Q66J51	325	Eukaryotic translation in	N/A	no	0.987	0.990	0.483	7e-87
B4I195	326	Eukaryotic translation in	N/A	no	0.981	0.981	0.476	1e-86
O02195	326	Eukaryotic translation in	yes	no	0.981	0.981	0.476	1e-86
B4Q354	326	Eukaryotic translation in	N/A	no	0.981	0.981	0.476	1e-86
Q29L19	326	Eukaryotic translation in	yes	no	0.975	0.975	0.486	3e-86
B4GSH1	326	Eukaryotic translation in	N/A	no	0.975	0.975	0.486	3e-86
B3N4C7	326	Eukaryotic translation in	N/A	no	0.981	0.981	0.473	3e-86

>sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2

 Score =  550 bits (1418), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/328 (82%), Positives = 298/328 (90%), Gaps = 2/328 (0%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPT+WFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLW+V++G +LFTF F++P RSVDFAVGD+LAVITTD F++  +
Sbjct: 61  SRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTA 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
           AIHVKRIA DP +Q  ESVL+L  P G  RINRAVWGPLN+TI+S GED ++RIWD ETG
Sbjct: 121 AIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETG 180

Query: 179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
           KLLK+SD+E GHKK ITSL KAAD SHFLTGSLDK+AKLWD RTL L+KTY T  PVNAV
Sbjct: 181 KLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240

Query: 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
           ++SPLL+HVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNP
Sbjct: 241 SLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNP 300

Query: 299 DGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
           DGKSFSSGGEDGYVRLHHFD DYFNIKI
Sbjct: 301 DGKSFSSGGEDGYVRLHHFDSDYFNIKI 328

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7ZV55|EIF3I_DANRE Eukaryotic translation initiation factor 3 subunit I OS=Danio rerio GN=eif3i PE=2 SV=1

 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 152/327 (46%), Positives = 219/327 (66%), Gaps = 5/327 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           M+PIL++GHER +T +KYN++GDLLFS AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MKPILLQGHERSITQIKYNREGDLLFSVAKDPIANVWYSVNGERLGTYNGHTGAVWCVDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             D+  ++TGSAD + +LW+ ETG QL      S  R+  F     + + +TD  M    
Sbjct: 61  DWDTKNVLTGSADNSCRLWDCETGKQLALLETSSAVRTCGFDFSGNIIMFSTDKQMGYQC 120

Query: 121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            ++   + RDP   +  +  + +   + +I  AVWGPL   +I+  E+  +  +  ++G+
Sbjct: 121 FLNYYDL-RDPQQIEDNQPYISVPCSESKITSAVWGPLGEFVIAGHENGEINQFSAKSGE 179

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
           +LK++ +   H K I  +  + D +  ++ S D +AK++D+ TLE +KT+ TERPVN+  
Sbjct: 180 VLKKAKE---HTKQINDIQSSVDLTMIISASKDCTAKMFDSSTLEHVKTFKTERPVNSAA 236

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVV+GGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN +AF+PD
Sbjct: 237 ISPIMDHVVMGGGQEAMEVTTTSTRIGKFEARFFHAAYEEEFGRVKGHFGPINCVAFHPD 296

Query: 300 GKSFSSGGEDGYVRLHHFDPDYFNIKI 326
           GKS+SSGGEDGYVR+H+FDP YF+ ++
Sbjct: 297 GKSYSSGGEDGYVRIHYFDPHYFDFEL 323

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Danio rerio (taxid: 7955)

>sp|Q5EBE8|EIF3I_XENTR Eukaryotic translation initiation factor 3 subunit I OS=Xenopus tropicalis GN=eif3i PE=2 SV=1

 Score =  321 bits (823), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 218/327 (66%), Gaps = 5/327 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYSGHTGAVWCVDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             D+  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct: 61  DWDTRHVLSGSADNSCRLWDCETGKQLALLETNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query: 121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            +    + RDP   +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct: 121 FVSFIDL-RDPTQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNQYSAKSGE 179

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
           ++  S KE  H K I  +  + D + F+T S D ++KL+D+ +LE  KT+ TERPVN+  
Sbjct: 180 IVN-SIKE--HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAA 236

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN+LAF+PD
Sbjct: 237 ISPIYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPD 296

Query: 300 GKSFSSGGEDGYVRLHHFDPDYFNIKI 326
           GKS+SSGGEDGYVR+H+FDP YF+ + 
Sbjct: 297 GKSYSSGGEDGYVRIHYFDPQYFDFEF 323

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|Q66J51|EIF3I_XENLA Eukaryotic translation initiation factor 3 subunit I OS=Xenopus laevis GN=eif3i PE=2 SV=1

 Score =  320 bits (821), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 158/327 (48%), Positives = 219/327 (66%), Gaps = 5/327 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYNGHTGAVWCVDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             ++  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct: 61  DWETRHVLSGSADNSCRLWDCETGKQLALLQTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query: 121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            +    + RDP+  +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct: 121 FVSFIDL-RDPSQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNHYSAKSGE 179

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
           ++  S KE  H K I  +  + D + F+T S D ++KL+D+ +LE  KT+ TERPVN+  
Sbjct: 180 IVN-SIKE--HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAA 236

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN+LAF+PD
Sbjct: 237 VSPIYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPD 296

Query: 300 GKSFSSGGEDGYVRLHHFDPDYFNIKI 326
           GKS+SSGGEDGYVR+H+FDP YF+ + 
Sbjct: 297 GKSYSSGGEDGYVRIHYFDPQYFDFEF 323

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

>sp|B4I195|EIF3I_DROSE Eukaryotic translation initiation factor 3 subunit I OS=Drosophila sechellia GN=Trip1 PE=3 SV=1

 Score =  320 bits (819), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/323 (47%), Positives = 215/323 (66%), Gaps = 3/323 (0%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKSFSSGGEDGYVRLHHFDPDYF 322
           GKS++SGGEDG+VR+  FD  YF
Sbjct: 299 GKSYASGGEDGFVRVQTFDSTYF 321

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila sechellia (taxid: 7238)

>sp|O02195|EIF3I_DROME Eukaryotic translation initiation factor 3 subunit I OS=Drosophila melanogaster GN=Trip1 PE=1 SV=1

 Score =  320 bits (819), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/323 (47%), Positives = 215/323 (66%), Gaps = 3/323 (0%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKSFSSGGEDGYVRLHHFDPDYF 322
           GKS++SGGEDG+VR+  FD  YF
Sbjct: 299 GKSYASGGEDGFVRVQTFDSTYF 321

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila melanogaster (taxid: 7227)

>sp|B4Q354|EIF3I_DROSI Eukaryotic translation initiation factor 3 subunit I OS=Drosophila simulans GN=Trip1 PE=3 SV=1

 Score =  320 bits (819), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/323 (47%), Positives = 215/323 (66%), Gaps = 3/323 (0%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKSFSSGGEDGYVRLHHFDPDYF 322
           GKS++SGGEDG+VR+  FD  YF
Sbjct: 299 GKSYASGGEDGFVRVQTFDSTYF 321

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila simulans (taxid: 7240)

>sp|Q29L19|EIF3I_DROPS Eukaryotic translation initiation factor 3 subunit I OS=Drosophila pseudoobscura pseudoobscura GN=Trip1 PE=3 SV=2

 Score =  318 bits (816), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 158/325 (48%), Positives = 213/325 (65%), Gaps = 7/325 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N 
Sbjct: 61  DWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ADQ     L +   + +I    WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFIIDVRNADSTLADQ--TPTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  + H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGSDHAAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297
             +SP+LDHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+
Sbjct: 237 AAISPILDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFH 296

Query: 298 PDGKSFSSGGEDGYVRLHHFDPDYF 322
           PDGKS++SGGEDG+VR+  FD  YF
Sbjct: 297 PDGKSYASGGEDGFVRVQTFDSTYF 321

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GSH1|EIF3I_DROPE Eukaryotic translation initiation factor 3 subunit I OS=Drosophila persimilis GN=Trip1 PE=3 SV=1

 Score =  318 bits (816), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 158/325 (48%), Positives = 213/325 (65%), Gaps = 7/325 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N 
Sbjct: 61  DWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ADQ     L +   + +I    WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFIIDVRNADSTLADQ--TPTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  + H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGSDHAAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297
             +SP+LDHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+
Sbjct: 237 AAISPILDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFH 296

Query: 298 PDGKSFSSGGEDGYVRLHHFDPDYF 322
           PDGKS++SGGEDG+VR+  FD  YF
Sbjct: 297 PDGKSYASGGEDGFVRVQTFDSTYF 321

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila persimilis (taxid: 7234)

>sp|B3N4C7|EIF3I_DROER Eukaryotic translation initiation factor 3 subunit I OS=Drosophila erecta GN=Trip1 PE=3 SV=1

 Score =  318 bits (815), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/323 (47%), Positives = 214/323 (66%), Gaps = 3/323 (0%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTTKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKSFSSGGEDGYVRLHHFDPDYF 322
           GKS++SGGEDG+VR+  FD  YF
Sbjct: 299 GKSYASGGEDGFVRVQTFDSTYF 321

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
449437818	326	PREDICTED: eukaryotic translation initia	1.0	1.0	0.917	1e-180
225424530	326	PREDICTED: eukaryotic translation initia	1.0	1.0	0.920	1e-179
356497716	326	PREDICTED: eukaryotic translation initia	1.0	1.0	0.923	1e-179
255561759	326	eukaryotic translation initiation factor	1.0	1.0	0.907	1e-178
13936812	326	TGF-beta receptor-interacting protein 1	1.0	1.0	0.907	1e-178
357453275	321	Eukaryotic translation initiation factor	0.984	1.0	0.912	1e-176
356531718	326	PREDICTED: eukaryotic translation initia	1.0	1.0	0.892	1e-175
356544180	326	PREDICTED: eukaryotic translation initia	1.0	1.0	0.895	1e-175
224111384	326	predicted protein [Populus trichocarpa]	1.0	1.0	0.877	1e-171
224099627	326	predicted protein [Populus trichocarpa]	1.0	1.0	0.868	1e-169

>gi|449437818|ref|XP_004136687.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Cucumis sativus] gi|449494685|ref|XP_004159618.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Cucumis sativus]

 Score =  635 bits (1638), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/326 (91%), Positives = 317/326 (97%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVW+ADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQTAKLWNV+TG QLF+FNFDSPAR+VDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP++Q GESVL+LKGPQGRINRAVWGPLN+TIISAGEDA+VRIWD+ETGKL
Sbjct: 121 AIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISAGEDAVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE GHKKT+TSL K++DGSHF+TGSLDKSAKLWD RTL LIKTYVTERPVNAVTM
Sbjct: 181 LKESDKEIGHKKTVTSLTKSSDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424530|ref|XP_002285281.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I [Vitis vinifera] gi|147853445|emb|CAN80198.1| hypothetical protein VITISV_030908 [Vitis vinifera] gi|297737552|emb|CBI26753.3| unnamed protein product [Vitis vinifera]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/326 (92%), Positives = 315/326 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQT KLWNVETGAQLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTVKLWNVETGAQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP+ Q  ES L++KGPQGRINRA+WGPLNRTIISAGEDAIVRIWD+ETGKL
Sbjct: 121 AIHVKRIARDPSQQTAESALVIKGPQGRINRAIWGPLNRTIISAGEDAIVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKETGHKKT+TSL+KA DGSHF+TGSLDKSAKLWD+RTL LIKTY+TERPVNAVTM
Sbjct: 181 LKESDKETGHKKTVTSLSKAVDGSHFVTGSLDKSAKLWDSRTLTLIKTYLTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDAS VTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASHVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFN+KI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNVKI 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497716|ref|XP_003517705.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 301/326 (92%), Positives = 316/326 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL S
Sbjct: 61  SRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DPA+Q GESVL++KGPQGRINRA+WGPLNRTIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPAEQTGESVLLIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD RTL LIKTYVTERPVNAV M
Sbjct: 181 LKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561759|ref|XP_002521889.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223538927|gb|EEF40525.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  628 bits (1620), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/326 (90%), Positives = 316/326 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYNK+GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNKEGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQTAKLW+V+TG QL++FNFDSPAR+VD +VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTAKLWDVKTGTQLYSFNFDSPARAVDLSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP +Q GESVL+LKGPQGRINRAVWGPLN+TI+SAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIARDPDNQTGESVLVLKGPQGRINRAVWGPLNKTILSAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESD+E GHKKTITSL K++DGSHFLTGSLDKSAKLWD RTL LIKTYVTERPVNAVTM
Sbjct: 181 LKESDREIGHKKTITSLTKSSDGSHFLTGSLDKSAKLWDIRTLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEE+GGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEVGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13936812|gb|AAK49947.1|AF335551_1 TGF-beta receptor-interacting protein 1 [Phaseolus vulgaris]

 Score =  628 bits (1620), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/326 (90%), Positives = 315/326 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP +Q G+SV+++KGPQGRINRA+WGPLNRTIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPTEQTGDSVVLIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           +KESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD RTL LIKTYVTERPVNAV M
Sbjct: 181 IKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453275|ref|XP_003596914.1| Eukaryotic translation initiation factor 3 subunit I [Medicago truncatula] gi|355485962|gb|AES67165.1| Eukaryotic translation initiation factor 3 subunit I [Medicago truncatula]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 293/321 (91%), Positives = 312/321 (97%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           MKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDVSRDS 
Sbjct: 1   MKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSG 60

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL+SAIHVK
Sbjct: 61  RLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELSSAIHVK 120

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           RIA+DP+DQ  ES+L++KGPQGRINRA+WGPLN+TIISAGEDA++RIWD+ETGKLLKESD
Sbjct: 121 RIAKDPSDQTAESLLVIKGPQGRINRAIWGPLNKTIISAGEDAVIRIWDSETGKLLKESD 180

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245
           KE GHKKTITSLAK+ADGSHF TGSLDKSAK+WD+RTL L+KTYVTERPVNAVTMSPLLD
Sbjct: 181 KELGHKKTITSLAKSADGSHFCTGSLDKSAKIWDSRTLSLVKTYVTERPVNAVTMSPLLD 240

Query: 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 305
           HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS
Sbjct: 241 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 300

Query: 306 GGEDGYVRLHHFDPDYFNIKI 326
           GGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 GGEDGYVRLHHFDPDYFNIKI 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531718|ref|XP_003534423.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 291/326 (89%), Positives = 315/326 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS+ LITGSADQTAKLW+V++G QL+TFNFDSPARSVDF+VGD+LAVITTDPFMEL+S
Sbjct: 61  SRDSVRLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDRLAVITTDPFMELSS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP +Q GES+L++KGP GRINRA+WGPLN TIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIADDPTEQSGESLLLIKGPLGRINRAIWGPLNSTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD R+L LIKTYVTERPVNAVTM
Sbjct: 181 LKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRSLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVV+GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544180|ref|XP_003540532.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max] gi|255646294|gb|ACU23631.1| unknown [Glycine max]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 292/326 (89%), Positives = 313/326 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLW+V++G QL+TFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSARLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP+ Q GESVL++KGPQGRINRA+WGPLN TIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPSQQIGESVLLIKGPQGRINRAIWGPLNTTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           L+ESDKE+GHKKT+TSLAK+AD SHFLTGSLDKSA+LWD R+L LIKTYVTERPVNAVTM
Sbjct: 181 LQESDKESGHKKTVTSLAKSADDSHFLTGSLDKSARLWDTRSLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVV+GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111384|ref|XP_002315834.1| predicted protein [Populus trichocarpa] gi|118484697|gb|ABK94219.1| unknown [Populus trichocarpa] gi|222864874|gb|EEF02005.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 286/326 (87%), Positives = 305/326 (93%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN++GDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNREGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LIT SADQ+ KLWNV+TGAQLFTFNF+SPARSVDF+VGDKLAVITTDPFM + S
Sbjct: 61  SRDSMLLITASADQSVKLWNVQTGAQLFTFNFNSPARSVDFSVGDKLAVITTDPFMGVTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AI+VK IA DP+ Q GESVL + GP GRINRAVWG LN+TIISAGED++VRIWD+ETGKL
Sbjct: 121 AINVKSIAEDPSQQSGESVLTITGPTGRINRAVWGSLNKTIISAGEDSVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESD E GHKK ITSL K+ADGSHFLTGSLDKSAKLWD RTL LIKTY TERPVNAVTM
Sbjct: 181 LKESDPEVGHKKPITSLTKSADGSHFLTGSLDKSAKLWDTRTLTLIKTYATERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDAS+VTTTDHRAGKFEAKF+DK+LQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASSVTTTDHRAGKFEAKFYDKVLQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099627|ref|XP_002311556.1| predicted protein [Populus trichocarpa] gi|222851376|gb|EEE88923.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/326 (86%), Positives = 305/326 (93%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN++GDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNREGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LIT SADQ+ KLWNV+TGAQL+TF+F+SPARSVDF+VGDKLAVITTDPFM + S
Sbjct: 61  SRDSMQLITASADQSVKLWNVQTGAQLYTFSFNSPARSVDFSVGDKLAVITTDPFMGVTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AI+VKRIA DP+ Q GESVL + GP GRINRAVWGPLNRTIISAGED +VRIWD+ETGKL
Sbjct: 121 AINVKRIADDPSQQSGESVLTITGPAGRINRAVWGPLNRTIISAGEDCVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKES+ E GHKK I+SL K+ADGSHFLTGSLDKSAK+ D+RTL LIK Y TERPVNAVTM
Sbjct: 181 LKESEPEVGHKKPISSLTKSADGSHFLTGSLDKSAKVGDSRTLTLIKNYTTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDAS+VTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASSVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326
           KSFSSGGEDGYVRLHHFDPDYFNIKI
Sbjct: 301 KSFSSGGEDGYVRLHHFDPDYFNIKI 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2063009	328	TRIP-1 "AT2G46280" [Arabidopsi	1.0	0.993	0.820	4.8e-149
TAIR|locus:2062994	355	AT2G46290 "AT2G46290" [Arabido	1.0	0.918	0.814	8.1e-147
ZFIN|ZDB-GENE-040426-1922	325	eif3i "eukaryotic translation	0.987	0.990	0.470	2e-81
UNIPROTKB|Q5EBE8	325	eif3i "Eukaryotic translation	0.984	0.987	0.487	3.2e-81
FB|FBgn0015834	326	Trip1 "Trip1" [Drosophila mela	0.987	0.987	0.478	4.1e-81
UNIPROTKB|Q66J51	325	eif3i "Eukaryotic translation	0.984	0.987	0.484	5.2e-81
UNIPROTKB|E1C6T8	325	EIF3I "Uncharacterized protein	0.984	0.987	0.484	1.1e-80
UNIPROTKB|B5FZ19	325	EIF3I "Eukaryotic translation	0.984	0.987	0.478	6e-80
UNIPROTKB|Q13347	325	EIF3I "Eukaryotic translation	0.984	0.987	0.481	2.6e-79
UNIPROTKB|Q5E966	325	EIF3I "Eukaryotic translation	0.984	0.987	0.481	3.3e-79

TAIR|locus:2063009 TRIP-1 "AT2G46280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1455 (517.2 bits), Expect = 4.8e-149, P = 4.8e-149
 Identities = 269/328 (82%), Positives = 298/328 (90%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPT+WFADNGERLGTYRGHNGAVWCCDV
Sbjct:     1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             SRDS  LITGSADQTAKLW+V++G +LFTF F++P RSVDFAVGD+LAVITTD F++  +
Sbjct:    61 SRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTA 120

Query:   121 AIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
             AIHVKRIA DP +Q  ESVL+L  P G  RINRAVWGPLN+TI+S GED ++RIWD ETG
Sbjct:   121 AIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETG 180

Query:   179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
             KLLK+SD+E GHKK ITSL KAAD SHFLTGSLDK+AKLWD RTL L+KTY T  PVNAV
Sbjct:   181 KLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240

Query:   239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
             ++SPLL+HVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNP
Sbjct:   241 SLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNP 300

Query:   299 DGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
             DGKSFSSGGEDGYVRLHHFD DYFNIKI
Sbjct:   301 DGKSFSSGGEDGYVRLHHFDSDYFNIKI 328

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2062994 AT2G46290 "AT2G46290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
 Identities = 267/328 (81%), Positives = 296/328 (90%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPTVWFADNGERLGTYRGH+GAVWCCD+
Sbjct:    28 MRPILMKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSGAVWCCDI 87

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             SRDS  LITGSADQTAKLW+V++G +LFTF F +PARSVDF+VGD LAVITTD F+  +S
Sbjct:    88 SRDSSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFSVGDHLAVITTDHFVGTSS 147

Query:   121 AIHVKRIARDPADQGGESVLILKGPQGR--INRAVWGPLNRTIISAGEDAIVRIWDTETG 178
             AIHVKRIA DP DQ G+SVL+L+ P G+  INRAVWGPLN+TI+S GEDA +RIWD ETG
Sbjct:   148 AIHVKRIAEDPEDQVGDSVLVLQSPDGKKKINRAVWGPLNQTIVSGGEDAAIRIWDAETG 207

Query:   179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
             KLLK+SD+E GHK+ ITSL KAAD SHFLTGS DK+AKLWD RTL LIKTY T  PVNAV
Sbjct:   208 KLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKLWDMRTLTLIKTYTTVVPVNAV 267

Query:   239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
              MSPLL+HVVLGGGQDASAVTTTDHRAGKFEAKF+D ILQEEIGGVKGHFGPINALAF+P
Sbjct:   268 AMSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDTILQEEIGGVKGHFGPINALAFSP 327

Query:   299 DGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
             DGKSFSSGGEDGYVRLHHFD +YFNIKI
Sbjct:   328 DGKSFSSGGEDGYVRLHHFDSNYFNIKI 355

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

ZFIN|ZDB-GENE-040426-1922 eif3i "eukaryotic translation initiation factor 3, subunit I" [Danio rerio (taxid:7955)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 154/327 (47%), Positives = 220/327 (67%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLFS AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFSVAKDPIANVWYSVNGERLGTYNGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F     + + +TD  M    
Sbjct:    61 DWDTKNVLTGSADNSCRLWDCETGKQLALLETSSAVRTCGFDFSGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              ++   + RDP   +  +  + +   + +I  AVWGPL   +I+  E+  +  +  ++G+
Sbjct:   121 FLNYYDL-RDPQQIEDNQPYISVPCSESKITSAVWGPLGEFVIAGHENGEINQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             +LK++ KE  H K I  +  + D +  ++ S D +AK++D+ TLE +KT+ TERPVN+  
Sbjct:   180 VLKKA-KE--HTKQINDIQSSVDLTMIISASKDCTAKMFDSSTLEHVKTFKTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP++DHVV+GGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN +AF+PD
Sbjct:   237 ISPIMDHVVMGGGQEAMEVTTTSTRIGKFEARFFHAAYEEEFGRVKGHFGPINCVAFHPD 296

Query:   300 GKSFSSGGEDGYVRLHHFDPDYFNIKI 326
             GKS+SSGGEDGYVR+H+FDP YF+ ++
Sbjct:   297 GKSYSSGGEDGYVRIHYFDPHYFDFEL 323

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q5EBE8 eif3i "Eukaryotic translation initiation factor 3 subunit I" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 159/326 (48%), Positives = 218/326 (66%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYSGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLSGSADNSCRLWDCETGKQLALLETNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP   +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFIDL-RDPTQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNQYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             ++  S KE  H K I  +  + D + F+T S D ++KL+D+ +LE  KT+ TERPVN+  
Sbjct:   180 IVN-SIKE--HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN+LAF+PD
Sbjct:   237 ISPIYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPD 296

Query:   300 GKSFSSGGEDGYVRLHHFDPDYFNIK 325
             GKS+SSGGEDGYVR+H+FDP YF+ +
Sbjct:   297 GKSYSSGGEDGYVRIHYFDPQYFDFE 322

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

FB|FBgn0015834 Trip1 "Trip1" [Drosophila melanogaster (taxid:7227)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 156/326 (47%), Positives = 217/326 (66%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct:    61 DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query:   121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:   121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
               K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct:   181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct:   239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query:   300 GKSFSSGGEDGYVRLHHFDPDYF-NI 324
             GKS++SGGEDG+VR+  FD  YF NI
Sbjct:   299 GKSYASGGEDGFVRVQTFDSTYFENI 324

GO:0003743 "translation initiation factor activity" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS;NAS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS;NAS

GO:0005829 "cytosol" evidence=NAS

GO:0006413 "translational initiation" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|Q66J51 eif3i "Eukaryotic translation initiation factor 3 subunit I" [Xenopus laevis (taxid:8355)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 158/326 (48%), Positives = 219/326 (67%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYNGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               ++  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWETRHVLSGSADNSCRLWDCETGKQLALLQTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFIDL-RDPSQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNHYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             ++  S KE  H K I  +  + D + F+T S D ++KL+D+ +LE  KT+ TERPVN+  
Sbjct:   180 IVN-SIKE--HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN+LAF+PD
Sbjct:   237 VSPIYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPD 296

Query:   300 GKSFSSGGEDGYVRLHHFDPDYFNIK 325
             GKS+SSGGEDGYVR+H+FDP YF+ +
Sbjct:   297 GKSYSSGGEDGYVRIHYFDPQYFDFE 322

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|E1C6T8 EIF3I "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 158/326 (48%), Positives = 212/326 (65%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYNGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLTGSADNSCRLWDCETGKQLALVKTSSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +     +I  AVWGPL   II+  E   +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIENNEPYMKIPCSDSKITSAVWGPLGEFIIAGHESGELNQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
              L    KE  H K I  +  + D + F+T S D +AKL+D  TLE +KT+ TERPVN+  
Sbjct:   180 QLSNI-KE--HTKQINDIQTSRDMTMFITASKDNTAKLFDCTTLEHLKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN++AF+PD
Sbjct:   237 LSPIFDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPD 296

Query:   300 GKSFSSGGEDGYVRLHHFDPDYFNIK 325
             GKS+SSGGEDGYVR+H+FDP YF  +
Sbjct:   297 GKSYSSGGEDGYVRIHYFDPQYFEFE 322

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|B5FZ19 EIF3I "Eukaryotic translation initiation factor 3 subunit I" [Taeniopygia guttata (taxid:59729)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 156/326 (47%), Positives = 213/326 (65%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYNGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLTGSADNSCRLWDCETGKQLALVKTSSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +     +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIENNEPYMKIPCSDSKITSAVWGPLGEFIIAGHENGELNQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
              L    KE  H K I  +  + D + F+T S D +AKL+D  +L+ +KT+ TERPVN+  
Sbjct:   180 QLSNI-KE--HTKQINDIQTSRDMTMFITASKDNTAKLFDCTSLKHLKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN++AF+PD
Sbjct:   237 LSPIFDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPD 296

Query:   300 GKSFSSGGEDGYVRLHHFDPDYFNIK 325
             GKS+SSGGEDGYVR+H+FDP YF  +
Sbjct:   297 GKSYSSGGEDGYVRIHYFDPQYFEFE 322

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|Q13347 EIF3I "Eukaryotic translation initiation factor 3 subunit I" [Homo sapiens (taxid:9606)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 157/326 (48%), Positives = 212/326 (65%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             +L    KE  H + I  +  + D + F+T S D +AKL+D+ TLE  KT+ TERPVN+  
Sbjct:   180 VLVNV-KE--HSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP  DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN++AF+PD
Sbjct:   237 LSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPD 296

Query:   300 GKSFSSGGEDGYVRLHHFDPDYFNIK 325
             GKS+SSGGEDGYVR+H+FDP YF  +
Sbjct:   297 GKSYSSGGEDGYVRIHYFDPQYFEFE 322

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5E966 EIF3I "Eukaryotic translation initiation factor 3 subunit I" [Bos taurus (taxid:9913)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 157/326 (48%), Positives = 212/326 (65%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIDSNEPYMRIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             +L    KE  H + I  +  + D + F+T S D +AKL+D+ TLE  KT+ TERPVN+  
Sbjct:   180 VLVNV-KE--HSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP  DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN++AF+PD
Sbjct:   237 LSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPD 296

Query:   300 GKSFSSGGEDGYVRLHHFDPDYFNIK 325
             GKS+SSGGEDGYVR+H+FDP YF  +
Sbjct:   297 GKSYSSGGEDGYVRIHYFDPQYFEFE 322

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7PP77	EIF3I_ANOGA	No assigned EC number	0.4523	0.9785	0.9755	yes	no
P0CS32	EIF3I_CRYNJ	No assigned EC number	0.4224	0.9815	0.9384	yes	no
Q54MT0	EIF3I_DICDI	No assigned EC number	0.4427	0.9754	0.9607	yes	no
Q5EBE8	EIF3I_XENTR	No assigned EC number	0.4862	0.9877	0.9907	yes	no
B0BNA7	EIF3I_RAT	No assigned EC number	0.4709	0.9877	0.9907	yes	no
Q5R7R2	EIF3I_PONAB	No assigned EC number	0.4709	0.9877	0.9907	yes	no
B5FZ19	EIF3I_TAEGU	No assigned EC number	0.4709	0.9877	0.9907	yes	no
Q4WX90	EIF3I_ASPFU	No assigned EC number	0.4410	0.9877	0.9470	yes	no
Q7ZV55	EIF3I_DANRE	No assigned EC number	0.4648	0.9877	0.9907	yes	no
Q38884	EIF3I_ARATH	No assigned EC number	0.8201	1.0	0.9939	no	no
Q6FL15	EIF3I_CANGA	No assigned EC number	0.4131	0.9846	0.9250	yes	no
Q5B8Y3	EIF3I_EMENI	No assigned EC number	0.4495	0.9877	0.9583	yes	no
P79083	EIF3I_SCHPO	No assigned EC number	0.4539	0.9938	0.9878	yes	no
O02195	EIF3I_DROME	No assigned EC number	0.4767	0.9815	0.9815	yes	no
Q6CI08	EIF3I_YARLI	No assigned EC number	0.4311	0.9907	0.9584	yes	no
Q9QZD9	EIF3I_MOUSE	No assigned EC number	0.4709	0.9877	0.9907	yes	no
Q13347	EIF3I_HUMAN	No assigned EC number	0.4740	0.9877	0.9907	yes	no
Q2UQ34	EIF3I_ASPOR	No assigned EC number	0.4461	0.9907	0.9641	yes	no
Q5IH81	EIF3I_RABIT	No assigned EC number	0.4587	0.9877	0.9669	yes	no
Q5E966	EIF3I_BOVIN	No assigned EC number	0.4740	0.9877	0.9907	yes	no
Q29L19	EIF3I_DROPS	No assigned EC number	0.4861	0.9754	0.9754	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030682001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgun sequence); (326 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015309001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (363 aa)				•	•	•	•		0.961
	GSVIVG00023929001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (269 aa)				•		•	•		0.955
	GSVIVG00024042001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (344 aa)				•	•	•	•		0.934
	GSVIVG00029350001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (344 aa)				•	•	•	•		0.933
	GSVIVG00031929001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_60, whole geno [...] (464 aa)				•	•	•	•		0.917
	GSVIVG00025658001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (437 aa)				•	•	•	•		0.896
	GSVIVG00001176001	SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)				•	•		•		0.894
	GSVIVG00022664001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (977 aa)				•	•	•	•		0.828
	GSVIVG00033547001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (333 aa)				•	•	•	•		0.825
	GSVIVG00022319001	SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (116 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-47
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-33
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-32
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
smart00320	40	smart00320, WD40, WD40 repeats	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	8e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  161 bits (409), Expect = 2e-47
 Identities = 90/310 (29%), Positives = 148/310 (47%), Gaps = 30/310 (9%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           KGH   +T + ++ DG LL + + D T  VW  + GE L T +GH G V     S D   
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 67  LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
           L +GS+D+T +LW++ETG  + T     S   SV F+   ++   ++      +  I V 
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR-----DKTIKVW 120

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
            +        G+ +  L+G    +N   + P    + S+ +D  +++WD  TGK +    
Sbjct: 121 DVET------GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL- 173

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLL 244
             TGH   + S+A + DG   L+ S D + KLWD  T + + T    E  VN+V  SP  
Sbjct: 174 --TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-D 230

Query: 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS 304
            +++  G +D +              + +D    E +  + GH   + +LA++PDGK  +
Sbjct: 231 GYLLASGSEDGT-------------IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 305 SGGEDGYVRL 314
           SG  DG +R+
Sbjct: 278 SGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  123 bits (310), Expect = 4e-33
 Identities = 74/271 (27%), Positives = 103/271 (38%), Gaps = 70/271 (25%)

Query: 45  LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104
             T +GH G V C   S D   L TGS D T K+W++ETG  L T               
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--------------- 46

Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164
                                                LKG  G +           + S 
Sbjct: 47  -------------------------------------LKGHTGPVRDVAASADGTYLASG 69

Query: 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224
             D  +R+WD ETG+ ++     TGH   ++S+A + DG    + S DK+ K+WD  T +
Sbjct: 70  SSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Query: 225 LIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283
            + T       VN+V  SP     V    QD   +   D R GK  A             
Sbjct: 127 CLTTLRGHTDWVNSVAFSP-DGTFVASSSQD-GTIKLWDLRTGKCVATL----------- 173

Query: 284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
             GH G +N++AF+PDG+   S   DG ++L
Sbjct: 174 -TGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (302), Expect = 8e-32
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH   ++ + ++ DG +L S ++D T  VW  + G+ L T RGH   V     S D  
Sbjct: 89  LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148

Query: 66  TLITGSADQTAKLWNVETG--AQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMELNSAI 122
            + + S D T KLW++ TG      T        SV F   G+KL   ++D        I
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSD------GTI 201

Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
            +  +        G+ +  L+G +  +N   + P    + S  ED  +R+WD  TG+ ++
Sbjct: 202 KLWDL------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
                +GH  ++TSLA + DG    +GS D + ++WD
Sbjct: 256 TL---SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  111 bits (278), Expect = 1e-27
 Identities = 86/311 (27%), Positives = 134/311 (43%), Gaps = 27/311 (8%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
           +GH   +T L ++ DG LL S +  D T  +W    G+ L T  GH   V     S D  
Sbjct: 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211

Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
           + + +GS+D T +LW++ TG  L +         V     D   + +       +  I +
Sbjct: 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS----DGTIRL 267

Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
             +           +  L G    +    + P  + + S   D  VR+WD ETGKLL  S
Sbjct: 268 WDL-----RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS-S 321

Query: 185 DKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL 243
               GH+  ++SL+ + DGS  ++G S D + +LWD RT + +KT      V +V+ SP 
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD 381

Query: 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF 303
              V  G                    + +D      +  + GH   + +L F+PDGKS 
Sbjct: 382 GRVVSSGSTDG--------------TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427

Query: 304 SSGGEDGYVRL 314
           +SG  D  +RL
Sbjct: 428 ASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  104 bits (259), Expect = 5e-25
 Identities = 79/320 (24%), Positives = 138/320 (43%), Gaps = 35/320 (10%)

Query: 4   ILMKGHERPLTYLKY-NKDGDLLFSCAKDHTPTV--W-FADNGERLGTYRGHNGAVWCCD 59
            L   H+  ++ L   + DG+ +   +     TV  W  +  G+ + T  GH+ +V    
Sbjct: 103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLA 162

Query: 60  VSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFME 117
            S D   L +GS  D T KLW++ TG  L T      P  S+ F+    L + +      
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS---- 218

Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
            +  I +  ++      G      L G    +  + + P    + S   D  +R+WD  +
Sbjct: 219 SDGTIRLWDLS-----TGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRS 272

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERP 234
                     +GH  ++ S+A + DG    +GS D + +LWD  T +L+ +      E P
Sbjct: 273 SS--SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330

Query: 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294
           V++++ SP    +V GG  D +              + +D    + +  ++GH   + ++
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTI-------------RLWDLRTGKPLKTLEGH-SNVLSV 376

Query: 295 AFNPDGKSFSSGGEDGYVRL 314
           +F+PDG+  SSG  DG VRL
Sbjct: 377 SFSPDGRVVSSGSTDGTVRL 396

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  101 bits (252), Expect = 5e-24
 Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 31/311 (9%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI 68
           +   L  L  ++ G LL +   D   ++    +       RGH  ++     S D   L+
Sbjct: 26  NSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL----LLRGHEDSITSIAFSPDGELLL 81

Query: 69  TGSADQTAKLWNVETGAQL---FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
           +GS+D T KLW+++ G +L        DS    +  +  D  +++        +S++   
Sbjct: 82  SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA------SSSLDGT 135

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKES 184
               D +  G + +  L+G    +    + P  + + S    D  +++WD  TGK L   
Sbjct: 136 VKLWDLSTPG-KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-- 192

Query: 185 DKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL 243
               GH   ++SLA + DG     +GS D + +LWD  T +L+++ ++    + V+    
Sbjct: 193 -TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251

Query: 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF 303
              ++  G  D   +   D R+     +              GH   + ++AF+PDGK  
Sbjct: 252 DGSLLASGSSD-GTIRLWDLRSSSSLLRTLS-----------GHSSSVLSVAFSPDGKLL 299

Query: 304 SSGGEDGYVRL 314
           +SG  DG VRL
Sbjct: 300 ASGSSDGTVRL 310

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 98.6 bits (244), Expect = 6e-23
 Identities = 81/323 (25%), Positives = 136/323 (42%), Gaps = 34/323 (10%)

Query: 2   RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNG----AVW 56
             +L++GHE  +T + ++ DG+LL S + D T  +W  DNGE+ + +  G +      + 
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 57  CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
                 +S+ L + S D T KLW++ T  +L              A      ++      
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA----- 171

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDT 175
              S   +    +    + G+ +  L G    ++   + P    +I S   D  +R+WD 
Sbjct: 172 ---SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 176 ETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTE 232
            TGKLL+ +    GH  + ++S +   DGS   +GS D + +LWD R+    L       
Sbjct: 229 STGKLLRSTLS--GHSDSVVSSFSP--DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 292
             V +V  SP    +  G       +   +                      KGH GP++
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL------------KGHEGPVS 332

Query: 293 ALAFNPDGKSFSSGG-EDGYVRL 314
           +L+F+PDG    SGG +DG +RL
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRL 355

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 91.3 bits (225), Expect = 2e-20
 Identities = 64/232 (27%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSM 65
            GH        ++ DG LL S + D T  +W   +    L T  GH+ +V     S D  
Sbjct: 239 SGHSDS-VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            L +GS+D T +LW++ETG  L +         V        ++  +     L S     
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS-------SLSFSPDGSLLVSGGSDD 350

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
              R    + G+ +  L+G    +    + P  R + S   D  VR+WD  TG LL+  D
Sbjct: 351 GTIRLWDLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
              GH   +TSL  + DG    +GS D + +LWD +T     ++  +  V A
Sbjct: 410 ---GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLA 458

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
            ++GHE  +  + ++ DG LL S ++D T  VW    GE + T  GH  +V     S D 
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG 273

Query: 65  MTLITGSADQTAKLWN 80
             L +GSAD T ++W+
Sbjct: 274 KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDH 246
            GH   +T +A + DG    TGS D + K+WD  T EL++T      PV  V  S     
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GT 64

Query: 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306
            +  G  D +              + +D    E +  + GH   ++++AF+PDG+  SS 
Sbjct: 65  YLASGSSDKTI-------------RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111

Query: 307 GEDGYVRLHHFD 318
             D  +++   +
Sbjct: 112 SRDKTIKVWDVE 123

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 1e-08
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
            +P+        +  + ++ DG ++ S + D T  +W    G  L    GH   V   D 
Sbjct: 361 GKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106
           S D  +L +GS+D T +LW+++T   L + +F    + +     D 
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKT--SLKSVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 41 NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
          +GE L T +GH G V     S D   L +GS D T KLW+
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
          G+ L T +GH G V     S D   L +GS D T ++W+
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
           KGH GP+ ++AF+PDG   +SG +DG VR+
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            GH   +TS+A + DG+   +GS D + ++WD
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316
           KGH GP+ ++AF+PDGK  +SG +DG ++L  
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            GH   +TS+A + DG +  +GS D + KLWD
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
           GE +  LKG  G +    + P  + + S  +D  +++WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
           G+ +  LKG  G +    + P    + S  +D  VR+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 163 SAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
           SAG D +V +WD E GK       E    H   ITSL    DGS   T S DK   + D 
Sbjct: 143 SAGADMVVNVWDVERGKA-----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197

Query: 221 R 221
           R
Sbjct: 198 R 198

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG4328	498	consensus WD40 protein [Function unknown]	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.7
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.69
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.69
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.69
KOG1273	405	consensus WD40 repeat protein [General function pr	99.68
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
PRK11028	330	6-phosphogluconolactonase; Provisional	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
KOG0649	325	consensus WD40 repeat protein [General function pr	99.63
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.62
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.62
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.61
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.61
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.6
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
KOG4227	609	consensus WD40 repeat protein [General function pr	99.57
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.56
PRK05137	435	tolB translocation protein TolB; Provisional	99.56
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
KOG1188	376	consensus WD40 repeat protein [General function pr	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.5
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.5
KOG1310	758	consensus WD40 repeat protein [General function pr	99.49
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.49
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.48
KOG1334	559	consensus WD40 repeat protein [General function pr	99.48
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.47
PRK02889	427	tolB translocation protein TolB; Provisional	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.4
PRK00178	430	tolB translocation protein TolB; Provisional	99.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
KOG2321	703	consensus WD40 repeat protein [General function pr	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.35
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.31
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.31
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.31
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
KOG2314	698	consensus Translation initiation factor 3, subunit	99.29
KOG2139	445	consensus WD40 repeat protein [General function pr	99.29
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.25
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.22
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.14
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.09
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.09
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.08
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.06
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.06
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.0
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.93
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.87
KOG2314	698	consensus Translation initiation factor 3, subunit	98.86
COG4946	668	Uncharacterized protein related to the periplasmic	98.85
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.84
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.84
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.81
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.79
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.78
COG4946	668	Uncharacterized protein related to the periplasmic	98.78
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.77
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.75
PRK04043	419	tolB translocation protein TolB; Provisional	98.74
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.74
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.73
KOG2315	566	consensus Predicted translation initiation factor	98.73
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.72
KOG2695	425	consensus WD40 repeat protein [General function pr	98.72
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.67
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.67
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.66
PRK04043	419	tolB translocation protein TolB; Provisional	98.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.62
KOG2695	425	consensus WD40 repeat protein [General function pr	98.59
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.56
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.55
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.52
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.4
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.39
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.39
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.35
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.35
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.31
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.31
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.27
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.27
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.22
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.21
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.12
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.07
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.0
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.99
PRK02888	635	nitrous-oxide reductase; Validated	97.96
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.95
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.92
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.83
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.8
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.79
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.78
KOG3621	726	consensus WD40 repeat-containing protein [General	97.77
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.77
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.76
KOG3621	726	consensus WD40 repeat-containing protein [General	97.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.63
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.62
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.61
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.56
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.39
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.35
PRK02888	635	nitrous-oxide reductase; Validated	97.33
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.33
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.29
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.29
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.22
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.01
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.0
KOG2395	644	consensus Protein involved in vacuole import and d	96.89
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.88
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.8
KOG2444	238	consensus WD40 repeat protein [General function pr	96.72
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.69
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.66
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.58
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.56
PRK13616	591	lipoprotein LpqB; Provisional	96.41
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.29
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.27
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.27
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.22
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.18
COG3391	381	Uncharacterized conserved protein [Function unknow	96.12
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.94
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.83
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.83
PRK13616	591	lipoprotein LpqB; Provisional	95.8
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.57
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.41
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.16
PHA02713	557	hypothetical protein; Provisional	94.99
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.71
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.68
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.63
COG3391	381	Uncharacterized conserved protein [Function unknow	94.36
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.99
KOG2444	238	consensus WD40 repeat protein [General function pr	93.98
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.82
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.39
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.33
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.26
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.2
KOG2395	644	consensus Protein involved in vacuole import and d	93.0
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.88
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.8
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.77
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.62
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.54
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.36
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.33
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.19
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.79
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.77
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.66
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.46
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.36
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.32
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.26
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	90.0
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.66
COG4590	733	ABC-type uncharacterized transport system, permeas	89.33
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.21
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.11
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	88.68
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.32
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.26
PHA02713	557	hypothetical protein; Provisional	88.17
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	87.84
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.8
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	87.54
COG5167	776	VID27 Protein involved in vacuole import and degra	87.16
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.17
PHA03098	534	kelch-like protein; Provisional	85.92
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	84.96
PRK13684	334	Ycf48-like protein; Provisional	84.87
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.36
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	84.07
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	83.93
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.64
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	83.23
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.93
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.92
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	81.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	81.07
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	80.21

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-61  Score=362.63  Aligned_cols=324  Identities=60%  Similarity=1.018  Sum_probs=304.3

Q ss_pred             CCceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461            1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (326)
Q Consensus         1 ~~~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd   80 (326)
                      |||++|+||+-+++.+.|+.+|.+|++|+.|.++.+|-..+|+++.+++||+++|||++..-+.+.+++|+.|.++++||
T Consensus         1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC-CCceEEEeccCccceeEEEEecCCc
Q 020461           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      +++|+++..+....++..+.|..++.+++++.+..+.....+.+.++..+.... +.++++.+..+.+.++.+.|.|.++
T Consensus        81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            999999999999999999999999999999998888888888888877655333 4456888889999999999999999


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEE
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  239 (326)
                      .|++|..||.|..||.++++.....  ...|...|+.+++++|..+++|+|.|.+-++||+++.++++++..+.|+|+.+
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             EEEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence            9999999999999999998665433  34688899999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ++|..++++++||++...++.++.|.++++.++|+....++++.++||-++|++++|+|||+..++|++||.|||..|++
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeC
Q 020461          320 DYFNIKI  326 (326)
Q Consensus       320 ~~~~~~~  326 (326)
                      +||+.++
T Consensus       319 ~YF~~~~  325 (327)
T KOG0643|consen  319 NYFDFKF  325 (327)
T ss_pred             chhheEe
Confidence            9999874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-47  Score=300.46  Aligned_cols=286  Identities=26%  Similarity=0.424  Sum_probs=232.5

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      .+.||..+|.|++|+|+|++||+|+.|.++|+||+.+.....++++|...|.|++|+||++.|++|+.||+|++||.++|
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cEEEEE--ecCCCcceeeeecC-----CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           85 AQLFTF--NFDSPARSVDFAVG-----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        85 ~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +++-.-  .+...+.++.|.|.     ...++.++     .++.+.+|++      ..+..+..+.||..+|+|+.|-.+
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s-----kDg~vrIWd~------~~~~~~~~lsgHT~~VTCvrwGG~  258 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS-----KDGSVRIWDT------KLGTCVRTLSGHTASVTCVRWGGE  258 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCccceeccc-----CCCCEEEEEc------cCceEEEEeccCccceEEEEEcCC
Confidence            875432  23344556665442     22222221     1233444543      235678889999999999999764


Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccccccc---------------------------------------------------
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDK---------------------------------------------------  186 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---------------------------------------------------  186 (326)
                       .+|++|+.|++|++|+...|.+.+++..                                                   
T Consensus       259 -gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  259 -GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             -ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence             4788999999999998877655433221                                                   


Q ss_pred             -------------------------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEe
Q 020461          187 -------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (326)
Q Consensus       187 -------------------------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~  240 (326)
                                               ..+|+..|..+.||||+.++|++|.|..|++||.++|+.+.++. +-.++.-++|
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw  417 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW  417 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence                                     13689999999999999999999999999999999999999997 5678999999


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      +.+...++. ++.|.             .++.|+..+.+....+.||...|.++.|+|||..+++|+.|..++||.
T Consensus       418 saDsRLlVS-~SkDs-------------TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  418 SADSRLLVS-GSKDS-------------TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ccCccEEEE-cCCCc-------------eEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            998665554 44443             245666666666777899999999999999999999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.2e-44  Score=275.95  Aligned_cols=284  Identities=20%  Similarity=0.338  Sum_probs=245.6

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ++|+||...|.++.|++|+++|+++|.||.+.|||..+...++.++-....|..++|+|.+++++.||.|+...||++.+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            78999999999999999999999999999999999999999999999899999999999999999999999999999985


Q ss_pred             C--cE---EE-EE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           84 G--AQ---LF-TF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        84 ~--~~---~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      .  +.   +. .+ .+..-..++.|.++..++..+++.      ...+|++      +.+..+..+.||.+-|.++.++|
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~------TCalWDi------e~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDM------TCALWDI------ETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcCCCceEecCCCc------eEEEEEc------ccceEEEEecCCcccEEEEecCC
Confidence            4  21   11 11 233445667777777776655543      3344544      45678889999999999999999


Q ss_pred             -CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---
Q 020461          157 -LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---  232 (326)
Q Consensus       157 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---  232 (326)
                       +++.|++|+.|++.++||++.+.+.+.+   .+|+..|.++.|.|+|.-++||+.|++.++||+|..+.+..+.++   
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF---~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~  273 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTF---EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII  273 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEee---cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence             8999999999999999999999887766   489999999999999999999999999999999998888888654   


Q ss_pred             cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461          233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV  312 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i  312 (326)
                      ..+++++||..|+.++++..+-              ...+|+...++.++.+.||..+|.++..+|||..++|||+|.++
T Consensus       274 ~gitSv~FS~SGRlLfagy~d~--------------~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l  339 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYDDF--------------TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL  339 (343)
T ss_pred             CCceeEEEcccccEEEeeecCC--------------ceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence            4789999999998888764322              34678888888899999999999999999999999999999999


Q ss_pred             EEee
Q 020461          313 RLHH  316 (326)
Q Consensus       313 ~l~~  316 (326)
                      |||.
T Consensus       340 riW~  343 (343)
T KOG0286|consen  340 RIWA  343 (343)
T ss_pred             eecC
Confidence            9995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-45  Score=293.84  Aligned_cols=281  Identities=24%  Similarity=0.367  Sum_probs=240.4

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEEEEEccCCc
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      |-..+|....||+|++.|||||.+|.+++|+..+...+.+|++|+..|.++.|+|.  +..++||+.||++++|++++..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            45678999999999999999999999999999999999999999999999999997  5589999999999999999877


Q ss_pred             EEEEEec-CCCcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           86 QLFTFNF-DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      .+..+.. ...+..+.|+|.+++...+. +...      .+|++      .+...+...+||...|.+++|+|+|..++|
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW------RlWD~------~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t  320 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW------RLWDL------ETKSELLLQEGHSKGVFSIAFQPDGSLAAT  320 (459)
T ss_pred             chhhhhcchhhheeeeecCCCceeeecccccch------hhccc------ccchhhHhhcccccccceeEecCCCceeec
Confidence            7766653 45566778888877765432 2211      12222      344566677899999999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEEEeCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP  242 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~  242 (326)
                      ||.|..-+|||+++++++..+   .+|..+|.+|+|+|+|..|||||.|++++|||++...++..++. ...|.-|.++|
T Consensus       321 GGlD~~~RvWDlRtgr~im~L---~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p  397 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMFL---AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP  397 (459)
T ss_pred             cCccchhheeecccCcEEEEe---cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence            999999999999999987655   47999999999999999999999999999999999888888764 45688999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      ....++++++.|.             .+++|.....++++.+.||.+.|.+++++||+.+++|++.|.+++||.
T Consensus       398 ~~g~fL~TasyD~-------------t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  398 QEGYFLVTASYDN-------------TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCeEEEEcccCc-------------ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            7666666666554             357788888888999999999999999999999999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-41  Score=256.56  Aligned_cols=246  Identities=24%  Similarity=0.345  Sum_probs=204.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      +.+.||...|..+..++||++.+++|.|+++|+||+.+++....|.+|...|.+++|++|.+.++||+.|++|++||...
T Consensus        57 r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g  136 (315)
T KOG0279|consen   57 RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG  136 (315)
T ss_pred             eeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--CcEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTI  161 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l  161 (326)
                      . +.+..                                                  .-.++...|.++.|+|.  ..+|
T Consensus       137 ~-ck~t~--------------------------------------------------~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen  137 V-CKYTI--------------------------------------------------HEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             c-EEEEE--------------------------------------------------ecCCCcCcEEEEEEcCCCCCcEE
Confidence            2 11110                                                  00122578999999998  6799


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeC
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s  241 (326)
                      +++|.|++|++||+++.+....+   .+|++.++.+.+||||..+++|+.||.+.+||++.++.+..+.+...+++++|+
T Consensus       166 vs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fs  242 (315)
T KOG0279|consen  166 VSASWDKTVKVWNLRNCQLRTTF---IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFS  242 (315)
T ss_pred             EEccCCceEEEEccCCcchhhcc---ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEec
Confidence            99999999999999987766554   589999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc---------ccccCcceeEEEECCCCceEEeecCCCcE
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG---------VKGHFGPINALAFNPDGKSFSSGGEDGYV  312 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---------~~~h~~~v~~v~~s~d~~~lat~s~Dg~i  312 (326)
                      |.--.++.+.+..               +++|+...+..+..         .+.-.....+++||+||..|.+|-.|+.|
T Consensus       243 pnrywL~~at~~s---------------IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  243 PNRYWLCAATATS---------------IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             CCceeEeeccCCc---------------eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence            9765555544332               34444333222111         11223456889999999999999999999


Q ss_pred             EEeecC
Q 020461          313 RLHHFD  318 (326)
Q Consensus       313 ~l~~~~  318 (326)
                      |+|.+.
T Consensus       308 rv~qv~  313 (315)
T KOG0279|consen  308 RVWQVA  313 (315)
T ss_pred             EEEEee
Confidence            999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=9.7e-40  Score=245.43  Aligned_cols=288  Identities=32%  Similarity=0.631  Sum_probs=241.3

Q ss_pred             ceeeeecCCceeEEEEc---cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461            3 PILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s---~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w   79 (326)
                      |++-.||.-+|..++||   |+|-+|.+++.|+.-.+-+-++|..+.+|.+|.++||+..+..+-...++++.|-+.++|
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            68889999999999999   578899999999999999999999999999999999999998877788999999999999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      |.-+|..+..+++..-+..+.|+.+...++.++ ++.+.+      ..+.+     ...+...+.+|.+.|..+.|....
T Consensus        87 ~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrv------fdln~-----p~App~E~~ghtg~Ir~v~wc~eD  155 (334)
T KOG0278|consen   87 DAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRV------FDLNR-----PKAPPKEISGHTGGIRTVLWCHED  155 (334)
T ss_pred             hhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhh------hhccC-----CCCCchhhcCCCCcceeEEEeccC
Confidence            999999999998888888888886655443322 222211      11111     123455678999999999999988


Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEE
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV  238 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  238 (326)
                      +.|++...|++||+||.++++.+..+.    -..+|+++-++++|.+| |-..-+.|++||.++.+.++.+..+..+.+.
T Consensus       156 ~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~nV~SA  230 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPCNVESA  230 (334)
T ss_pred             ceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCccccccc
Confidence            999999999999999999998877664    34679999999999754 5555678999999999999999999999999


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-cccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +++|.. .++++|++|.             ..+.|+-.++++++.+ ++|.++|.|+.|+|||..-|+||+||+||||+.
T Consensus       231 SL~P~k-~~fVaGged~-------------~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  231 SLHPKK-EFFVAGGEDF-------------KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             cccCCC-ceEEecCcce-------------EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            999987 6677777764             3455666777777775 899999999999999999999999999999998


Q ss_pred             CCC
Q 020461          318 DPD  320 (326)
Q Consensus       318 ~~~  320 (326)
                      -+.
T Consensus       297 ~~~  299 (334)
T KOG0278|consen  297 TPG  299 (334)
T ss_pred             cCC
Confidence            663

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.4e-39  Score=275.07  Aligned_cols=245  Identities=27%  Similarity=0.463  Sum_probs=211.6

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-------------------------------CeeeeccCcccce
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-------------------------------ERLGTYRGHNGAV   55 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-------------------------------~~~~~~~~h~~~V   55 (326)
                      ..-...++|+.|++|+.+||.|-.|..|++|.+...                               ....++.||.++|
T Consensus       375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            334456899999999999999999999999977631                               1123467999999


Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCC
Q 020461           56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG  135 (326)
Q Consensus        56 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (326)
                      ..+.|+|+.++|+++|.|+++|+|.+.+..++                                                
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~------------------------------------------------  486 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL------------------------------------------------  486 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeE------------------------------------------------
Confidence            99999999999999999999999999875432                                                


Q ss_pred             CceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeE
Q 020461          136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA  215 (326)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i  215 (326)
                          ...+||..+|..+.|+|.|.+|+|||.|++.++|......+.+.   ..+|...|.|+.|+|+..|++|||.|.++
T Consensus       487 ----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi---faghlsDV~cv~FHPNs~Y~aTGSsD~tV  559 (707)
T KOG0263|consen  487 ----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI---FAGHLSDVDCVSFHPNSNYVATGSSDRTV  559 (707)
T ss_pred             ----EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh---hcccccccceEEECCcccccccCCCCceE
Confidence                23468899999999999999999999999999999876555543   46899999999999999999999999999


Q ss_pred             EEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461          216 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (326)
Q Consensus       216 ~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  294 (326)
                      |+||+.+|..++-|. +..++.++++||+|..+++++ .++             .+.+|+...+..+..+.+|.+.|.++
T Consensus       560 RlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~-------------~I~iWDl~~~~~v~~l~~Ht~ti~Sl  625 (707)
T KOG0263|consen  560 RLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDG-------------LIKIWDLANGSLVKQLKGHTGTIYSL  625 (707)
T ss_pred             EEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCC-------------cEEEEEcCCCcchhhhhcccCceeEE
Confidence            999999999999986 457899999999988777654 332             36788888888899999999999999


Q ss_pred             EECCCCceEEeecCCCcEEEeecCCC
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .||.||..||+|+.|.+|++|++..-
T Consensus       626 sFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  626 SFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999999988643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.7e-39  Score=256.88  Aligned_cols=281  Identities=25%  Similarity=0.424  Sum_probs=228.6

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      +.+|..++|.|+|++|++|+..|.+.+|+...-.....+.+|..+|.++.|++++.+++||+.+|.||+|+.+.......
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            45789999999999999999999999999865555556689999999999999999999999999999999865432222


Q ss_pred             Eec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461           90 FNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (326)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  168 (326)
                      ..+ ...++.+.|++.+..++.+.+     ++.+++|.....      ..-..++||.--|.++.|+|....+++||.|.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~Sd-----Dg~ikiWdf~~~------kee~vL~GHgwdVksvdWHP~kgLiasgskDn  244 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSD-----DGTIKIWDFRMP------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDN  244 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecC-----CCeEEEEeccCC------chhheeccCCCCcceeccCCccceeEEccCCc
Confidence            223 367888899986654444433     234455554332      23345689999999999999999999999999


Q ss_pred             cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCee
Q 020461          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHV  247 (326)
Q Consensus       169 ~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~  247 (326)
                      .|++||.++++++.++   .+|...|+.+.|++++++|+|+|.|..++++|+++.+.++.+. +...+.++.|+|....+
T Consensus       245 lVKlWDprSg~cl~tl---h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l  321 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATL---HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL  321 (464)
T ss_pred             eeEeecCCCcchhhhh---hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence            9999999999998765   4799999999999999999999999999999999888777776 66789999999999999


Q ss_pred             EEecCCCcceeEeecccCceeeeEeecccceeeecc-ccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +++||.|+..+             .|.....+++.. ..+|...|++++|+|=|-.||+|+.|.++|+|.-
T Consensus       322 ftsgg~Dgsvv-------------h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  322 FTSGGSDGSVV-------------HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eeeccCCCceE-------------EEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            99988887543             232222223322 3579999999999999999999999999999963

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8e-37  Score=248.25  Aligned_cols=277  Identities=25%  Similarity=0.479  Sum_probs=232.7

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      ..|++++|+.+|..||+|+.||.+|||+ .+|.++.++..|.++|.++.|+..|.+|++++.|+++-+||..+++....+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence            4689999999999999999999999999 478889999999999999999999999999999999999999999988888


Q ss_pred             ecCCCc-ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461           91 NFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (326)
Q Consensus        91 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  169 (326)
                      .+.... ..++|-..+.++...++.      .+++..+.      ...++.++.||+++|+.+.|+|.+.+|++++.|++
T Consensus       315 ~~~s~~~lDVdW~~~~~F~ts~td~------~i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T  382 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSNDEFATSSTDG------CIHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT  382 (524)
T ss_pred             eeccCCccceEEecCceEeecCCCc------eEEEEEec------CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence            776544 567887777777665553      33344332      23577788999999999999999999999999999


Q ss_pred             EEEEECCCCccccccccccCcceeeEEEEEcCCCC---------eEEEEeCCCeEEEeecCCcceEEEE-eeccceEEEE
Q 020461          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGS---------HFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT  239 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~---------~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~  239 (326)
                      ++||......+...+   .+|+..|..+.|+|+|.         .+++++.|++|++||+..+.++..+ .+..+|.+++
T Consensus       383 lkiWs~~~~~~~~~l---~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva  459 (524)
T KOG0273|consen  383 LKIWSMGQSNSVHDL---QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA  459 (524)
T ss_pred             eEeeecCCCcchhhh---hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence            999998877666544   47999999999998654         6999999999999999999999999 5778999999


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      |+|++..++.+. .|+.             +.+|+...++.++.+.+. +.|..+.|+.+|.+|..+-.||.+++-+|+
T Consensus       460 fS~~g~ylAsGs-~dg~-------------V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  460 FSPNGRYLASGS-LDGC-------------VHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ecCCCcEEEecC-CCCe-------------eEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999998877653 3332             345666666666666553 459999999999999999999999997764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.1e-36  Score=249.00  Aligned_cols=289  Identities=21%  Similarity=0.310  Sum_probs=221.7

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc---CcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      .++.|...|.|+.|+|||+++++++.||++.+||-++|+.+.++.   +|++.|++++|+||+..++|+|.|+++|+||+
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            467799999999999999999999999999999999999999997   89999999999999999999999999999999


Q ss_pred             cCCcEEEEEecCCCccee---eeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           82 ETGAQLFTFNFDSPARSV---DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      .+++++..+.....+...   .+..++.++.++...++      .+...    .  .......+.||+..|+++..+|++
T Consensus       265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i------n~ln~----~--d~~~~~~i~GHnK~ITaLtv~~d~  332 (603)
T KOG0318|consen  265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI------NYLNP----S--DPSVLKVISGHNKSITALTVSPDG  332 (603)
T ss_pred             eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE------EEecc----c--CCChhheecccccceeEEEEcCCC
Confidence            999988888665432111   12235555544433322      22211    1  123677889999999999999999


Q ss_pred             cEEEEeeCCCcEEEEECCCCcccccc--------ccc----------------------------------c--------
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKES--------DKE----------------------------------T--------  188 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~--------~~~----------------------------------~--------  188 (326)
                      .+|++|+-||.|.-||..++..-+..        ...                                  .        
T Consensus       333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la  412 (603)
T KOG0318|consen  333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA  412 (603)
T ss_pred             CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence            99999999999999998765443110        000                                  0        


Q ss_pred             ----------------------------CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce---EEEEeeccceEE
Q 020461          189 ----------------------------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---IKTYVTERPVNA  237 (326)
Q Consensus       189 ----------------------------~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~  237 (326)
                                                  .-.....+++++|+++.++.|+.|+.|++|.+...+.   .....+..++.+
T Consensus       413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~  492 (603)
T KOG0318|consen  413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD  492 (603)
T ss_pred             EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence                                        0112345677899999999999999999999876543   233456678999


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee-eeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      +++||++..++++-......              +|+....+ ....+..|.+.|++|+|||+.+++||||-|-+|.||+
T Consensus       493 vaySpd~~yla~~Da~rkvv--------------~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  493 VAYSPDGAYLAAGDASRKVV--------------LYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             EEECCCCcEEEEeccCCcEE--------------EEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            99999999888765444332              23322211 2233456999999999999999999999999999999


Q ss_pred             cCC
Q 020461          317 FDP  319 (326)
Q Consensus       317 ~~~  319 (326)
                      ++.
T Consensus       559 v~k  561 (603)
T KOG0318|consen  559 VKK  561 (603)
T ss_pred             ccC
Confidence            863

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.4e-37  Score=232.38  Aligned_cols=235  Identities=17%  Similarity=0.261  Sum_probs=197.1

Q ss_pred             CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeee
Q 020461           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA  102 (326)
Q Consensus        23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  102 (326)
                      -+|+++|-|++||+|.+.+|.|..+++...+.|+.+.+.|+++.|++|+.- .||+||++++..                
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np----------------   73 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP----------------   73 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC----------------
Confidence            479999999999999999999999999888899999999999999888775 699999986532                


Q ss_pred             cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccc
Q 020461          103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK  182 (326)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  182 (326)
                                                        .++..+.+|.+.|+.+.|..+|+++++||+||++||||++...+.+
T Consensus        74 ----------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR  119 (311)
T KOG0315|consen   74 ----------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR  119 (311)
T ss_pred             ----------------------------------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence                                              2456678899999999999999999999999999999999855544


Q ss_pred             ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--cceEEEEeCCCCCeeEEecCCCcceeEe
Q 020461          183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTT  260 (326)
Q Consensus       183 ~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~  260 (326)
                      .+    .|..+|+++..+|+...|++|..+|.|++||++...+.+++.++  .++.++.+.|++..++.+...+.+++. 
T Consensus       120 ~~----~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW-  194 (311)
T KOG0315|consen  120 NY----QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVW-  194 (311)
T ss_pred             hc----cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEE-
Confidence            43    57799999999999999999999999999999998887777553  578999999999988876554444332 


Q ss_pred             ecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                       +.....      ....-+++..++.|++.+..+.||||+++|||+|.|.+++||+.+.-
T Consensus       195 -~l~~~~------~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  195 -RLLNHQ------TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             -EccCCC------ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence             211111      01123556778999999999999999999999999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.5e-38  Score=251.35  Aligned_cols=235  Identities=21%  Similarity=0.310  Sum_probs=203.7

Q ss_pred             ceeeeecCCceeEEEEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461            3 PILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd   80 (326)
                      ..+|+||...+.++.|+|.  +.-||||+.||++++|.+++...+..+.+|...|..++|+|+|++|+|++.|.+-++||
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD  289 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD  289 (459)
T ss_pred             eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence            3689999999999999997  56899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      +.++..+.... +...+.++.|.+++.+++.++-     +..-.+|++      .++..++.+.||..+|..++|+|+|.
T Consensus       290 ~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl-----D~~~RvWDl------Rtgr~im~L~gH~k~I~~V~fsPNGy  358 (459)
T KOG0272|consen  290 LETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL-----DSLGRVWDL------RTGRCIMFLAGHIKEILSVAFSPNGY  358 (459)
T ss_pred             cccchhhHhhcccccccceeEecCCCceeeccCc-----cchhheeec------ccCcEEEEecccccceeeEeECCCce
Confidence            99987654433 4566778888887777665432     222233433      46789999999999999999999999


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEE
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (326)
                      .++|||.|++++|||++..+.+..+   .+|...|+.|.|+| .|.+|+|++.|++++||..++..+++.+. ++..|.+
T Consensus       359 ~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s  435 (459)
T KOG0272|consen  359 HLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS  435 (459)
T ss_pred             EEeecCCCCcEEEeeecccccceec---ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence            9999999999999999987776554   58999999999998 78899999999999999999999999986 5788999


Q ss_pred             EEeCCCCCeeEEec
Q 020461          238 VTMSPLLDHVVLGG  251 (326)
Q Consensus       238 ~~~s~~~~~~~~~~  251 (326)
                      +.+++++..+++++
T Consensus       436 ~Dis~d~~~i~t~s  449 (459)
T KOG0272|consen  436 LDISPDSQAIATSS  449 (459)
T ss_pred             EEeccCCceEEEec
Confidence            99999988776654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2e-36  Score=230.80  Aligned_cols=248  Identities=24%  Similarity=0.366  Sum_probs=203.6

Q ss_pred             eeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecC-----CCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461            4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFAD-----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~-----~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      -+|++|.+.|+.++-.+. .+.|++++.|.++.+|++.     .|..++.++||...|..+..++|+++.+++|.|+++|
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr   88 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR   88 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence            478999999999999987 5689999999999999764     4566889999999999999999999999999999999


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +||+.+++...                                                    .+.||...|.+++|+|+
T Consensus        89 lWDl~~g~~t~----------------------------------------------------~f~GH~~dVlsva~s~d  116 (315)
T KOG0279|consen   89 LWDLATGESTR----------------------------------------------------RFVGHTKDVLSVAFSTD  116 (315)
T ss_pred             EEEecCCcEEE----------------------------------------------------EEEecCCceEEEEecCC
Confidence            99998775432                                                    34578888999999999


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCcceEEEEe-eccc
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYV-TERP  234 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~  234 (326)
                      ...+++|+.|.+|++|++... +..++. ..+++.-|.|+.|+|+  ..++++++.|+++|+||+++.+....+. +...
T Consensus       117 n~qivSGSrDkTiklwnt~g~-ck~t~~-~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~  194 (315)
T KOG0279|consen  117 NRQIVSGSRDKTIKLWNTLGV-CKYTIH-EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY  194 (315)
T ss_pred             CceeecCCCcceeeeeeeccc-EEEEEe-cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc
Confidence            999999999999999998754 333332 2234788999999998  7899999999999999999999888876 4568


Q ss_pred             eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      ++.+++||+|..++. ||.|+             +..+|+....+.+. ..+|..+|++++|+|+...|+.+. +..|+|
T Consensus       195 v~t~~vSpDGslcas-Ggkdg-------------~~~LwdL~~~k~ly-sl~a~~~v~sl~fspnrywL~~at-~~sIkI  258 (315)
T KOG0279|consen  195 VNTVTVSPDGSLCAS-GGKDG-------------EAMLWDLNEGKNLY-SLEAFDIVNSLCFSPNRYWLCAAT-ATSIKI  258 (315)
T ss_pred             EEEEEECCCCCEEec-CCCCc-------------eEEEEEccCCceeE-eccCCCeEeeEEecCCceeEeecc-CCceEE
Confidence            999999999977665 44443             33455555554433 346888999999999887777655 555999


Q ss_pred             eecCCCc
Q 020461          315 HHFDPDY  321 (326)
Q Consensus       315 ~~~~~~~  321 (326)
                      |++++..
T Consensus       259 wdl~~~~  265 (315)
T KOG0279|consen  259 WDLESKA  265 (315)
T ss_pred             Eeccchh
Confidence            9998754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.1e-36  Score=254.69  Aligned_cols=301  Identities=25%  Similarity=0.415  Sum_probs=233.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      +...||.+.|+++.|+.|.++|++||.|-++|||.++..+.  ...+.+|..+|-++-|..+...+++.+.||.+.+|..
T Consensus       139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~  218 (893)
T KOG0291|consen  139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC  218 (893)
T ss_pred             eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence            56789999999999999999999999999999998876554  6778999999999999999999999999999999987


Q ss_pred             cC-----------------------CcE-----EE----EEec---CCCcceeeeecCCeEEEEEcCc-ccee---ce--
Q 020461           82 ET-----------------------GAQ-----LF----TFNF---DSPARSVDFAVGDKLAVITTDP-FMEL---NS--  120 (326)
Q Consensus        82 ~~-----------------------~~~-----~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~--  120 (326)
                      ..                       ++.     ..    ..-+   ...+.+..++++..+++++-.. .+.+   ..  
T Consensus       219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~  298 (893)
T KOG0291|consen  219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN  298 (893)
T ss_pred             cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence            61                       111     00    0001   1344555666666555544221 1100   00  


Q ss_pred             eeeeeee--------ccC----CC--------------CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE
Q 020461          121 AIHVKRI--------ARD----PA--------------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (326)
Q Consensus       121 ~~~~~~~--------~~~----~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd  174 (326)
                      .++...+        ..+    +.              -++...++...+|...+++++++|||+++++|++||.|||||
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence            0010000        000    00              011234555678999999999999999999999999999999


Q ss_pred             CCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc--eEEEEeCCCCCeeEEecC
Q 020461          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~  252 (326)
                      ..++.|+.++.   .|...|+.+.|+..|..+++.|.||+|+.||+..+.+.+++..+.+  ..|++..|.|+.++++ +
T Consensus       379 ~~SgfC~vTFt---eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG-~  454 (893)
T KOG0291|consen  379 TQSGFCFVTFT---EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG-A  454 (893)
T ss_pred             ccCceEEEEec---cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee-c
Confidence            99999988774   6999999999999999999999999999999999999999987655  4567777777765554 3


Q ss_pred             CCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .|            .+++.+|+.++++.+-.++||.+||.+++|+|++..||+||+|.+||+|++=..
T Consensus       455 ~d------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  455 QD------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             cc------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            33            357788888899999999999999999999999999999999999999987543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.1e-37  Score=240.87  Aligned_cols=246  Identities=22%  Similarity=0.375  Sum_probs=215.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      +++.||.+=|.|+++.|...++++|+.|++++|||+++|.+..++.||...|..+++|+-..|+++++.|+.||-||++.
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            68899999999999999999999999999999999999999999999999999999999889999999999999999986


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ++.+.                                                    ..-||.+.|.++..+|.-..|++
T Consensus       225 nkvIR----------------------------------------------------~YhGHlS~V~~L~lhPTldvl~t  252 (460)
T KOG0285|consen  225 NKVIR----------------------------------------------------HYHGHLSGVYCLDLHPTLDVLVT  252 (460)
T ss_pred             hhhHH----------------------------------------------------HhccccceeEEEeccccceeEEe
Confidence            65321                                                    22478889999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~  242 (326)
                      |+.|.++++||+++...+..+   .||..+|..+.+.|....++|||.|++|++||++.++....+. +...+.+++.+|
T Consensus       253 ~grDst~RvWDiRtr~~V~~l---~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP  329 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTRASVHVL---SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP  329 (460)
T ss_pred             cCCcceEEEeeecccceEEEe---cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC
Confidence            999999999999988766654   5899999999999988899999999999999999998887775 456899999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ....++.++. |              .++-|+...++.++.+.+|++.|++++.+.|+- +++|++.|.+.+|+....
T Consensus       330 ~e~~fASas~-d--------------nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  330 KENLFASASP-D--------------NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             chhhhhccCC-c--------------cceeccCCccchhhccccccceeeeeeeccCce-EEEcCCceEEEEEecCcC
Confidence            8766665432 2              355677777777788899999999999987765 556999999999998754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.5e-36  Score=254.59  Aligned_cols=271  Identities=23%  Similarity=0.358  Sum_probs=212.2

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      -+.||...++++++||||+++|+|+.||+|+|||...+-|+.+|..|+..|..+.|+..++.++++|.||+||.||+...
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEecCCCcceeeeec--CCeE-EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           85 AQLFTFNFDSPARSVDFAV--GDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ++-.++..+.|..-.+++.  .+.+ ++...+.+     .+.+|.+      ++|+.+-.++||.++|.++.|+|.+..|
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F-----~IfvWS~------qTGqllDiLsGHEgPVs~l~f~~~~~~L  493 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF-----EIFVWSV------QTGQLLDILSGHEGPVSGLSFSPDGSLL  493 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccceE-----EEEEEEe------ecCeeeehhcCCCCcceeeEEccccCeE
Confidence            9988888777765554443  2333 33333322     3455554      4678888999999999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461          162 ISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (326)
                      +++++|.+||+||+-.... ..++    .+...++.+.|.|+|..+++++.||.|.+||.+....+..+..-        
T Consensus       494 aS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgr--------  561 (893)
T KOG0291|consen  494 ASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGR--------  561 (893)
T ss_pred             EeccccceEEEEEeeccCceeeeE----eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccch--------
Confidence            9999999999999854422 2222    46678999999999999999999999999999876554443211        


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                           .=+.+|...      .|.+                ...-.....+.+++.||+||+++.+|+....|.|++++..
T Consensus       562 -----kD~~~gR~~------~D~~----------------ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  562 -----KDLSGGRKE------TDRI----------------TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             -----hhccccccc------ccee----------------ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence                 111111100      0100                0011122357899999999999999999999999999887


Q ss_pred             ceeee
Q 020461          321 YFNIK  325 (326)
Q Consensus       321 ~~~~~  325 (326)
                      -+-+|
T Consensus       615 vllkk  619 (893)
T KOG0291|consen  615 VLLKK  619 (893)
T ss_pred             heeee
Confidence            65443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-36  Score=242.74  Aligned_cols=287  Identities=20%  Similarity=0.312  Sum_probs=223.7

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC---eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd   80 (326)
                      .++..|.+.|..+.||++|++|||++.|.+.-||.+....   ..+++.+|..+|.-+.||||.++|++|+.|..+++||
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence            4678899999999999999999999999999999876543   4778999999999999999999999999999999999


Q ss_pred             ccCCcEEEEEecC--CCcceeeeecCCeE-EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEec
Q 020461           81 VETGAQLFTFNFD--SPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGP  156 (326)
Q Consensus        81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~  156 (326)
                      ..+|.....+...  ....++.|.|+..- ++.+++..      +..|..       .+.....+++- ...|.+++.++
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~------i~~wdl-------Dgn~~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT------IIMWDL-------DGNILGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc------EEEecC-------CcchhhcccccccceeEEEEEcC
Confidence            9999887766543  44566777776544 33333321      111111       11122223332 24588999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc--
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--  234 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--  234 (326)
                      ||+++++...|..|++++.++......+    .-..+++++++|.|++++++.-.+..+++||++....++++.....  
T Consensus       365 Dgk~vl~v~~d~~i~l~~~e~~~dr~li----se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  365 DGKYVLLVTVDKKIRLYNREARVDRGLI----SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH  440 (519)
T ss_pred             CCcEEEEEecccceeeechhhhhhhccc----cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence            9999999999999999998765444322    2346799999999999999999999999999998888888764332  


Q ss_pred             -eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-CceEEeecCCCcE
Q 020461          235 -VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-GKSFSSGGEDGYV  312 (326)
Q Consensus       235 -~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~lat~s~Dg~i  312 (326)
                       +---||.-..+.++++|++|.             .+++|....+.++..+.||...|++|+|+|. -.+||+||+||+|
T Consensus       441 fiIrSCFgg~~~~fiaSGSED~-------------kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI  507 (519)
T KOG0293|consen  441 FIIRSCFGGGNDKFIASGSEDS-------------KVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI  507 (519)
T ss_pred             eEEEeccCCCCcceEEecCCCc-------------eEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence             333345544445666666654             4678999999999999999999999999995 5679999999999


Q ss_pred             EEeecCCC
Q 020461          313 RLHHFDPD  320 (326)
Q Consensus       313 ~l~~~~~~  320 (326)
                      |||...+.
T Consensus       508 RIWg~~~~  515 (519)
T KOG0293|consen  508 RIWGPSDN  515 (519)
T ss_pred             EEecCCcc
Confidence            99988765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-36  Score=239.09  Aligned_cols=246  Identities=24%  Similarity=0.374  Sum_probs=192.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee-eeccCcccceEEEEEcC-----CCCeEEEEeCCCcEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-----DSMTLITGSADQTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-~~~~~h~~~V~~~~~~~-----~~~~l~s~~~d~~i~   77 (326)
                      -+.++|..=|.|++|+|||+.||+|+.||+|++||-++|+.+ ..+++|...|++++|.|     ..++|+++|.||+|+
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR  230 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence            467899999999999999999999999999999999998764 67999999999999965     578999999999999


Q ss_pred             EEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceee---------------e---------ee-------
Q 020461           78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI---------------H---------VK-------  125 (326)
Q Consensus        78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~---------~~-------  125 (326)
                      |||+..++++..+. +..++.++.+.-.+.+...+.+..+.++...               +         +.       
T Consensus       231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t  310 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT  310 (480)
T ss_pred             EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence            99999988776654 4556666665422222221111111000000               0         00       


Q ss_pred             ------------------------------------eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461          126 ------------------------------------RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (326)
Q Consensus       126 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  169 (326)
                                                          .+.-.......+++..+.||+..|+.+.|+|+++++++++.|..
T Consensus       311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence                                                00000000112344456789999999999999999999999999


Q ss_pred             EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeE
Q 020461          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVV  248 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~  248 (326)
                      |++||-++|+.+..+.   ||-..|..++|+.|..+|++||.|.++++||+++.+....++ +...+.++.|+|+|..++
T Consensus       391 VkLW~g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  391 VKLWDGRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             eeeeeCCCcchhhhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence            9999999999887764   899999999999999999999999999999999999988887 667899999999998877


Q ss_pred             EecC
Q 020461          249 LGGG  252 (326)
Q Consensus       249 ~~~~  252 (326)
                      .+|.
T Consensus       468 sggk  471 (480)
T KOG0271|consen  468 SGGK  471 (480)
T ss_pred             cCCC
Confidence            6544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2e-34  Score=238.81  Aligned_cols=284  Identities=32%  Similarity=0.518  Sum_probs=229.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+++|.++|.+++|+|++++|++++.|+.+++|+..+++....+..|...+..+.|+|+++++++++.|+.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45679999999999999999999999999999999999888888899999999999999999999999999999999998


Q ss_pred             CcEEEEEec-CCCcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           84 GAQLFTFNF-DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ++....+.. ...+.++.+.+...+++++. +.      .+.++.+.      .+.....+..|...+.++.|+|++.++
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~i~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l  150 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK------TIKVWDVE------TGKCLTTLRGHTDWVNSVAFSPDGTFV  150 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCC------eEEEEECC------CcEEEEEeccCCCcEEEEEEcCcCCEE
Confidence            766666553 34667777777666665554 32      23333332      234556667888899999999998888


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-eeccceEEEEe
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTM  240 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~  240 (326)
                      ++++.|+.|++||+++++....+.   .|...+.++.+++++..+++++.|+.|++||+++++.+..+ .+...+.++.+
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  227 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF  227 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence            888889999999998777665543   67778999999999999999999999999999998888887 45668999999


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      +|++..++. ++.++             .+++|+.........+.+|...|.+++|+|++.+|++++.||.|++|+
T Consensus       228 ~~~~~~~~~-~~~~~-------------~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         228 SPDGYLLAS-GSEDG-------------TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCCcEEEE-EcCCC-------------cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            998544444 33222             234444444444555668888999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.3e-36  Score=257.56  Aligned_cols=247  Identities=24%  Similarity=0.392  Sum_probs=203.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..|.||.++|+..+|+|+.++|++||.|+++|+|.+.+..++-.++||..|||.+.|+|-|-+|||||.|++.++|....
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999998653


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      .                                                    .+.+.+.||.+-|.|+.|+|+..++++
T Consensus       525 ~----------------------------------------------------~PlRifaghlsDV~cv~FHPNs~Y~aT  552 (707)
T KOG0263|consen  525 N----------------------------------------------------KPLRIFAGHLSDVDCVSFHPNSNYVAT  552 (707)
T ss_pred             C----------------------------------------------------CchhhhcccccccceEEECCccccccc
Confidence            2                                                    234456788999999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~  242 (326)
                      ||.|.++|+||+.+|..++.+   .||..+|+++++||+|.+|++|+.||.|++||+.++..+.++. +...+.++.|+.
T Consensus       553 GSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~  629 (707)
T KOG0263|consen  553 GSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR  629 (707)
T ss_pred             CCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec
Confidence            999999999999999887655   5899999999999999999999999999999999999888874 456899999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEe-----e-------cccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKF-----F-------DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG  307 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~-------~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s  307 (326)
                      ++..+++++++..  +..||...-......     .       .......++.+.....+|..+.|..-.-.|+.|.
T Consensus       630 dg~vLasgg~Dns--V~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~  704 (707)
T KOG0263|consen  630 DGNVLASGGADNS--VRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP  704 (707)
T ss_pred             CCCEEEecCCCCe--EEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence            9998888776544  334444332221000     0       0011223455556667899999986555566553

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.8e-34  Score=227.74  Aligned_cols=289  Identities=16%  Similarity=0.278  Sum_probs=229.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      +.+..|.++|.+++.+|+.++++||+.|-...||+..+++...++.+|...|.++.|+.++.+|+||+.+|.|++|...+
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           84 GAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      +.....+..+ ..+--+.|+|...+++++...     ..+=.|.+.      +......+.||+.++++-.|.|+|+.++
T Consensus       138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~D-----GsvWmw~ip------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTD-----GSVWMWQIP------SQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             CceEEEeecccCceEEEEecccccEEEeecCC-----CcEEEEECC------CcceeeEecCCCCCcccccccCCCceEE
Confidence            9877666422 233445667765555544321     111122222      1246677899999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCcccccccccc------------------------------------------------Ccce--
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKET------------------------------------------------GHKK--  192 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~------------------------------------------------~h~~--  192 (326)
                      ++..||+|++|+.++++.+..+....                                                ++..  
T Consensus       207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence            99999999999999988765544110                                                0111  


Q ss_pred             -eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeE
Q 020461          193 -TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK  271 (326)
Q Consensus       193 -~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (326)
                       .|-++.++..-++.|+|+.||+|.|||+.....-+...++..+..+.|-+ ...++++..++              .++
T Consensus       287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g--------------~v~  351 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG--------------KVR  351 (399)
T ss_pred             hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc--------------eEE
Confidence             12223344555678999999999999999988877788888888888888 44444443322              345


Q ss_pred             eecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          272 FFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      .|+..+++.+..+.||+..|.+++++|+.+.++|+|.|++.+||.++
T Consensus       352 ~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  352 QWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            67777777788899999999999999999999999999999998765

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.4e-36  Score=244.69  Aligned_cols=286  Identities=21%  Similarity=0.329  Sum_probs=232.1

Q ss_pred             eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCC-CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      .++.||.+.|+++.|.| .+.+|++|+.|+.|+||++.+ +.++++|.+|..+|..++|+++|..|+|+|.|+++++||.
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            57899999999999999 899999999999999999987 8899999999999999999999999999999999999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCC-eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      ++|+++..+..+....++.+.+++ ++++++..     +..+..|++.      +++.+.....|.+.|..+.|-+.++.
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-----d~ki~~wDiR------s~kvvqeYd~hLg~i~~i~F~~~g~r  356 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS-----DKKIRQWDIR------SGKVVQEYDRHLGAILDITFVDEGRR  356 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecC-----CCcEEEEecc------chHHHHHHHhhhhheeeeEEccCCce
Confidence            999999999999899999999877 44444332     2233334332      23344445567889999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce------EEEEeeccc
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------IKTYVTERP  234 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~~  234 (326)
                      +++.++|+++++|+....-.++.+..  .+.....++..+|++.++++-+.|+.|.++.+...-.      ..-....+.
T Consensus       357 FissSDdks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy  434 (503)
T KOG0282|consen  357 FISSSDDKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY  434 (503)
T ss_pred             EeeeccCccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence            99999999999999987766554432  2345677899999999999999999999998653211      111123345


Q ss_pred             eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEE
Q 020461          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVR  313 (326)
Q Consensus       235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~  313 (326)
                      ...+.|||+++.++.+.+++              .+.+|+..+...+..++.|.+++..+.|+|... .+|||++||.|+
T Consensus       435 s~~v~fSpDG~~l~SGdsdG--------------~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik  500 (503)
T KOG0282|consen  435 SCQVDFSPDGRTLCSGDSDG--------------KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK  500 (503)
T ss_pred             eeeEEEcCCCCeEEeecCCc--------------cEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence            66788999999888775544              245677777777888899999999999999765 699999999999


Q ss_pred             Eee
Q 020461          314 LHH  316 (326)
Q Consensus       314 l~~  316 (326)
                      +|+
T Consensus       501 iwd  503 (503)
T KOG0282|consen  501 IWD  503 (503)
T ss_pred             ecC
Confidence            995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.4e-34  Score=221.63  Aligned_cols=285  Identities=23%  Similarity=0.396  Sum_probs=214.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      -.+.||++.|+.+.|+|+|.+|+||+.|..|.+|++... +-..++++|.++|..+.|.+|+..++++|.|++++.||++
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            467899999999999999999999999999999996533 4466788999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCCC-cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           83 TGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      +|+.+..++.+.. ++.+....-+...+++..    .+...+++++....+      +..+ ...-+++++.|..++..+
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs----dD~t~kl~D~R~k~~------~~t~-~~kyqltAv~f~d~s~qv  189 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS----DDGTLKLWDIRKKEA------IKTF-ENKYQLTAVGFKDTSDQV  189 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecC----CCceEEEEeecccch------hhcc-ccceeEEEEEecccccce
Confidence            9999887765433 333332221222222221    123445555543211      1111 123467889999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc----ceEEEEee-----c
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVT-----E  232 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~-----~  232 (326)
                      .+|+-|+.|++||++.......+   .||...|+.+..+++|.++.+-+.|.++++||++..    .++.-+..     +
T Consensus       190 ~sggIdn~ikvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe  266 (338)
T KOG0265|consen  190 ISGGIDNDIKVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE  266 (338)
T ss_pred             eeccccCceeeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence            99999999999999887766554   589999999999999999999999999999999864    33444432     2


Q ss_pred             cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461          233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV  312 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i  312 (326)
                      ...-.++|+|++..+.++.. |.             ..+.|+......+-.+.||.+-|++++|+|....+.+++.|.+|
T Consensus       267 knlL~cswsp~~~~i~ags~-dr-------------~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  267 KNLLKCSWSPNGTKITAGSA-DR-------------FVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             hhcceeeccCCCCccccccc-cc-------------eEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence            23446778888766544332 22             23455555544555678999999999999999999999999999


Q ss_pred             EEee
Q 020461          313 RLHH  316 (326)
Q Consensus       313 ~l~~  316 (326)
                      .|=.
T Consensus       333 ~lge  336 (338)
T KOG0265|consen  333 YLGE  336 (338)
T ss_pred             Eeec
Confidence            8743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-34  Score=220.66  Aligned_cols=254  Identities=23%  Similarity=0.416  Sum_probs=191.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      ++-.+|+..|..++|+|.|++|+++|-|.++.||.-.++  +++.++.||...|.|++|+++|++||+|+.|+.|-+|.+
T Consensus        55 vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   55 VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            444679999999999999999999999999999986655  678999999999999999999999999999999999988


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ..+...                                                 +...++..|..-|..+.|+|...+|
T Consensus       135 deddEf-------------------------------------------------ec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen  135 DEDDEF-------------------------------------------------ECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             cCCCcE-------------------------------------------------EEEeeeccccccccEEEEcCCccee
Confidence            644321                                                 2344567788889999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeC
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s  241 (326)
                      ++++-|++|++|+-.....-.......+|...|.+++|++.|..|++++.|++++||...+.-.   ..+...+..+.+.
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD  242 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec
Confidence            9999999999998763322222333468889999999999999999999999999998653211   1233456666666


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-CceEEeecCCCcEEEeecC
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-GKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~lat~s~Dg~i~l~~~~  318 (326)
                        ...++.+++++...++-...   ...--.|+..    ...-..|.-.|++++|+|. ...|++|+.||.|++|.+.
T Consensus       243 --~~~IaS~ggD~~i~lf~~s~---~~d~p~~~l~----~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  243 --NGVIASGGGDDAIRLFKESD---SPDEPSWNLL----AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             --ccceEeccCCCEEEEEEecC---CCCCchHHHH----HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence              23344455554433321110   0000011111    1123468789999999995 6789999999999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-34  Score=228.26  Aligned_cols=285  Identities=22%  Similarity=0.285  Sum_probs=233.5

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .-+.||..+|+.+-|+|+-.++++++.|+++++||..++++...++||...|..++|+..|+++++++.|-.+++||..+
T Consensus       102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~  181 (406)
T KOG0295|consen  102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT  181 (406)
T ss_pred             hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C-cEEEE-EecCCCcceeeeecCCeEEE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461           84 G-AQLFT-FNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        84 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      - +++.. ..++..+.++.+.|.+..++ ++.+.      .++.|+.      ..+.++.++.+|...|..++.+.||..
T Consensus       182 ~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~------tik~We~------~tg~cv~t~~~h~ewvr~v~v~~DGti  249 (406)
T KOG0295|consen  182 FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN------TIKAWEC------DTGYCVKTFPGHSEWVRMVRVNQDGTI  249 (406)
T ss_pred             HHHHHHHhcCcccceeeEEEEecCCeeeeccccc------ceeEEec------ccceeEEeccCchHhEEEEEecCCeeE
Confidence            2 22221 22344556666666443333 22222      3333433      456788999999999999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC---------------CCeEEEEeCCCeEEEeecCCcce
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---------------GSHFLTGSLDKSAKLWDARTLEL  225 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~---------------~~~l~s~s~dg~i~iwd~~~~~~  225 (326)
                      +++++.|.+|++|-+.++++...+   .+|+.+|.+++|.|.               +.++.+++.|++||+||+.++.|
T Consensus       250 ~As~s~dqtl~vW~~~t~~~k~~l---R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c  326 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATKQCKAEL---REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC  326 (406)
T ss_pred             EEecCCCceEEEEEeccchhhhhh---hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence            999999999999999988766554   368889999987542               24899999999999999999999


Q ss_pred             EEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEE
Q 020461          226 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS  304 (326)
Q Consensus       226 ~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la  304 (326)
                      +.++. +..-+..++|+|-|..++.++.+.              .++.|+....+....+..|..-|++++|..+-.+++
T Consensus       327 L~tL~ghdnwVr~~af~p~Gkyi~ScaDDk--------------tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~Vv  392 (406)
T KOG0295|consen  327 LFTLVGHDNWVRGVAFSPGGKYILSCADDK--------------TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVV  392 (406)
T ss_pred             EEEEecccceeeeeEEcCCCeEEEEEecCC--------------cEEEEEeccceeeeccCCCcceeEEEecCCCCceEE
Confidence            99986 567899999999998888775433              245666666666666778989999999999999999


Q ss_pred             eecCCCcEEEeec
Q 020461          305 SGGEDGYVRLHHF  317 (326)
Q Consensus       305 t~s~Dg~i~l~~~  317 (326)
                      ||+.|.++++|..
T Consensus       393 TGsVdqt~KvwEc  405 (406)
T KOG0295|consen  393 TGSVDQTVKVWEC  405 (406)
T ss_pred             eccccceeeeeec
Confidence            9999999999964

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=215.38  Aligned_cols=251  Identities=22%  Similarity=0.355  Sum_probs=209.3

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      ..++.+|+++|.++.|+-||+|.++|+.|.+||+||...|.+++++.+|...|..++.+.|+..|++|+.|+.+.+||++
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      +|+...                                                    .+++|.+.|+.+.|+.....++
T Consensus        90 TGkv~R----------------------------------------------------r~rgH~aqVNtV~fNeesSVv~  117 (307)
T KOG0316|consen   90 TGKVDR----------------------------------------------------RFRGHLAQVNTVRFNEESSVVA  117 (307)
T ss_pred             cCeeee----------------------------------------------------ecccccceeeEEEecCcceEEE
Confidence            886543                                                    3468889999999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~  242 (326)
                      +|+.|.++++||-++... ..++........|.++....  ..+++||.||+++.||+|.+.+...+. ..+++++++++
T Consensus       118 SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~  193 (307)
T KOG0316|consen  118 SGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSK  193 (307)
T ss_pred             eccccceeEEEEcccCCC-CccchhhhhcCceeEEEecc--cEEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecC
Confidence            999999999999875432 12222223456688887764  479999999999999999998866654 46899999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcce--eEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI--NALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +++-++++.-+.              .+++.+..+++.++.++||...=  ...+++..-..+++||+||.|.+|++.++
T Consensus       194 d~nc~La~~l~s--------------tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  194 DGNCSLASSLDS--------------TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             CCCEEEEeeccc--------------eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence            998877654322              35667777888888899997654  34556666788999999999999999887


Q ss_pred             cee
Q 020461          321 YFN  323 (326)
Q Consensus       321 ~~~  323 (326)
                      .+.
T Consensus       260 ~~~  262 (307)
T KOG0316|consen  260 TQI  262 (307)
T ss_pred             eee
Confidence            654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.9e-34  Score=213.78  Aligned_cols=248  Identities=19%  Similarity=0.281  Sum_probs=198.3

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +++..+..|..+...|+++.||+++. ..||+||+.++.  .+.+|.+|+..|.++.|..+|+.++|||.||++|+||++
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence            34445667899999999999987765 588999998764  588999999999999999999999999999999999997


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ...+-..+                                                     .+.++|+++..+|+...|+
T Consensus       114 ~~~~qR~~-----------------------------------------------------~~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen  114 SLSCQRNY-----------------------------------------------------QHNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             Ccccchhc-----------------------------------------------------cCCCCcceEEecCCcceEE
Confidence            63221111                                                     2447788899999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce------EEEEe-eccce
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------IKTYV-TERPV  235 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~-~~~~~  235 (326)
                      +|.++|.|++||+....+..++.+.  ....|.++...|||++++++...|+.++|++-+.+.      +.++. +...+
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i  218 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI  218 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE
Confidence            9999999999999887666655443  347899999999999999999999999999866433      33332 34567


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      ..+-+||++..+++++.+....+...|..   +          +.-..+.+|+++++..+||.||.||+||+.|+++|+|
T Consensus       219 l~C~lSPd~k~lat~ssdktv~iwn~~~~---~----------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  219 LRCLLSPDVKYLATCSSDKTVKIWNTDDF---F----------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             EEEEECCCCcEEEeecCCceEEEEecCCc---e----------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeec
Confidence            78889999999998877665444433321   0          1112367899999999999999999999999999999


Q ss_pred             ecCCCc
Q 020461          316 HFDPDY  321 (326)
Q Consensus       316 ~~~~~~  321 (326)
                      ++...-
T Consensus       286 ~~~~~k  291 (311)
T KOG0315|consen  286 DLSAGK  291 (311)
T ss_pred             ccccCc
Confidence            987643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5e-33  Score=243.41  Aligned_cols=285  Identities=26%  Similarity=0.426  Sum_probs=230.6

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc-cCCc
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV-ETGA   85 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~   85 (326)
                      |...+.++.|+++|+++++++.|+.+++|+..+..  ....+.+|...|..++|+|+++++++++.|++||+||+ ..+.
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence            36789999999999999999999999999998777  77788899999999999999999999999999999999 4457


Q ss_pred             EEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .+..+. +...+.++.|.+.+.+++.+..     +..+++|++.      .++....+++|...|+.++|++++..|+++
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~-----D~tvriWd~~------~~~~~~~l~~hs~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSD-----DGTVRIWDVR------TGECVRKLKGHSDGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             EEEEecCCCCceEEEEecCCCCEEEEecC-----CCcEEEEecc------CCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence            777764 5667888999987765555433     3355566553      367889999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCc--cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc----ceEEE
Q 020461          165 GEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER----PVNAV  238 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~  238 (326)
                      +.|+.|++||+.++.  +...+....... .+++++|+|++.++++++.|+++++||++.+.++..+....    .+...
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence            999999999999988  344444332333 69999999999999999999999999999998888875322    22233


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeEEEECCCCceEEeec--CCCcEEEe
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGKSFSSGG--EDGYVRLH  315 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~d~~~lat~s--~Dg~i~l~  315 (326)
                      .+++.+..+++ |..|.             .+++|+......+..+.+| ...+..++++|...++++++  .|+.+++|
T Consensus       386 ~~~~~~~~i~s-g~~d~-------------~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  386 TLSTGGKLIYS-GSEDG-------------SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW  451 (456)
T ss_pred             cccCCCCeEEE-EeCCc-------------eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence            33444444333 33332             4567777777777888999 89999999999999999999  79999999


Q ss_pred             ecCC
Q 020461          316 HFDP  319 (326)
Q Consensus       316 ~~~~  319 (326)
                      ..+.
T Consensus       452 ~~~~  455 (456)
T KOG0266|consen  452 KYDF  455 (456)
T ss_pred             cCCC
Confidence            8763

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=7.3e-34  Score=220.18  Aligned_cols=292  Identities=20%  Similarity=0.315  Sum_probs=218.7

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC------------C------CeeeeccCcccceEEEEEcCCCC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------------G------ERLGTYRGHNGAVWCCDVSRDSM   65 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~------------~------~~~~~~~~h~~~V~~~~~~~~~~   65 (326)
                      ..+..|+.++.+.+|||||.++++||.|-+|+|.|++.            +      -.++++..|..+|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            57889999999999999999999999999999999861            1      24678889999999999999999


Q ss_pred             eEEEEeCCCcEEEEEccCCcE---EEEEecCCCcceeeeecCCeEEEEEcC-ccceeceeeeeeeeccCCCCCCCceEEE
Q 020461           66 TLITGSADQTAKLWNVETGAQ---LFTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLI  141 (326)
Q Consensus        66 ~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (326)
                      .|++++.|++||++|+.....   ...++-..+++++.|+|.+.+++++++ +...+...-..+......         -
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan---------P  256 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN---------P  256 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC---------c
Confidence            999999999999999865322   223334568899999998777766654 443332221111111100         1


Q ss_pred             eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      -.+|.+.|+++.+++.++..++|+.||.|++||--+++++.++....+ ...|++..|..+|+++++.+.|..+++|.+.
T Consensus       257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-GSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-CceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            136888999999999999999999999999999988999887764322 3679999999999999999999999999999


Q ss_pred             CcceEEEEeeccc------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec-cccccCcceeEE
Q 020461          222 TLELIKTYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINAL  294 (326)
Q Consensus       222 ~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v  294 (326)
                      ++.++..+.....      .....|+-..+. ++...+....+.+||.|...            .+. .-.||++.+..+
T Consensus       336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdy-Vl~pDEas~slcsWdaRtad------------r~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDY-VLFPDEASNSLCSWDARTAD------------RVALLSLGHNGAVRWI  402 (430)
T ss_pred             CCceEEEEecCCcccchhhhhhhhhcCccce-EEccccccCceeeccccchh------------hhhhcccCCCCCceEE
Confidence            9999999864321      111223222222 23333333344455544422            111 125899999999


Q ss_pred             EECCCCceEEeecCCCcEEEeecC
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      .=||.+..|.|||.|-.+|+|-=.
T Consensus       403 ~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  403 VHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             EeCCCCCceeeecccceeeeeeec
Confidence            999999999999999999999543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5e-32  Score=208.22  Aligned_cols=253  Identities=24%  Similarity=0.377  Sum_probs=195.8

Q ss_pred             eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (326)
                      +++++|.+.|.++.|++|+++++++|.||.+.+||.-+......+..+ .-+..+.++|...++++++     +++...+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-----LdN~Csi  123 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-----LDNKCSI  123 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-----cCceeEE
Confidence            678999999999999999999999999999999998776555555443 2355677888887777654     2222333


Q ss_pred             eeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CC
Q 020461          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DG  203 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~  203 (326)
                      ..+..............+.+|.+.+.++.|-+ ...|+|++.|.+..+||+++++....+   .+|.+.|.+++++| ++
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f---~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVF---HGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEe---cCCcccEEEEecCCCCC
Confidence            33332111222234456889999999999988 567899999999999999999887765   48999999999999 99


Q ss_pred             CeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461          204 SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG  282 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  282 (326)
                      +.+++|+.|++.++||+|.+.++++|. ++..++++.|.|++..++.+. +|+ ....+|.|... ++..|..       
T Consensus       200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~-tcRlyDlRaD~-~~a~ys~-------  269 (343)
T KOG0286|consen  200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDA-TCRLYDLRADQ-ELAVYSH-------  269 (343)
T ss_pred             CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCc-eeEEEeecCCc-EEeeecc-------
Confidence            999999999999999999999999997 567899999999998766543 333 34455665533 2222221       


Q ss_pred             cccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                        ..-..+|++++||..|++|.+|-.|.++.+|+.--
T Consensus       270 --~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk  304 (343)
T KOG0286|consen  270 --DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK  304 (343)
T ss_pred             --CcccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence              11235799999999999999999999999998643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.1e-33  Score=236.95  Aligned_cols=255  Identities=22%  Similarity=0.329  Sum_probs=214.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKL   78 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~   78 (326)
                      .+++||++.|.+++...+|-+|+|||.|.++++|.++++    .++....+|++.|.+++++..+ .+|+++|.|+++|+
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~  438 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL  438 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence            578999999999997777899999999999999977544    3456678999999999997654 48999999999999


Q ss_pred             EEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        79 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      |++...+....     +           +..                           ....+...|...|++++++|+.
T Consensus       439 W~l~~s~~~~~-----~-----------~~~---------------------------~~~~t~~aHdKdIN~Vaia~nd  475 (775)
T KOG0319|consen  439 WDLPKSKETAF-----P-----------IVL---------------------------TCRYTERAHDKDINCVAIAPND  475 (775)
T ss_pred             ecCCCcccccc-----c-----------cee---------------------------hhhHHHHhhcccccceEecCCC
Confidence            99875322100     0           000                           0111235688899999999999


Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEE
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (326)
                      +.|+|||.|.+.+||++++.+....+   .||...|.+|.|++..+.++|+|.|++||||.+.++.|++++. +...+--
T Consensus       476 kLiAT~SqDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr  552 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR  552 (775)
T ss_pred             ceEEecccccceeeecccCceEEEEe---eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence            99999999999999999977666655   5899999999999999999999999999999999999999998 5667888


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +.|-..+..++.++.++              .+++|+..+.+....+.+|+..|++++-+|...+++||+.||.|.+|.=
T Consensus       553 a~F~~~~~qliS~~adG--------------liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  553 ASFIRNGKQLISAGADG--------------LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             eeeeeCCcEEEeccCCC--------------cEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            88988888888876544              4678888888888889999999999999999999999999999999964


Q ss_pred             C
Q 020461          318 D  318 (326)
Q Consensus       318 ~  318 (326)
                      .
T Consensus       619 ~  619 (775)
T KOG0319|consen  619 V  619 (775)
T ss_pred             C
Confidence            3

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=203.34  Aligned_cols=246  Identities=18%  Similarity=0.305  Sum_probs=198.3

Q ss_pred             ceeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCC---Ceeeec-cCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461            3 PILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG---ERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~---~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      ...+.+|++.+..++|+|- |.+|||||.|..||||+...+   .+...+ .+|+..|.+++|+|.|++|++||.|.++-
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            3678899999999999998 889999999999999998753   333344 36999999999999999999999999999


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +|--..++                                                  -+.+.+++||.+.|.+++|+++
T Consensus        87 Iw~k~~~e--------------------------------------------------fecv~~lEGHEnEVK~Vaws~s  116 (312)
T KOG0645|consen   87 IWKKEDGE--------------------------------------------------FECVATLEGHENEVKCVAWSAS  116 (312)
T ss_pred             EeecCCCc--------------------------------------------------eeEEeeeeccccceeEEEEcCC
Confidence            99643321                                                  1345678899999999999999


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC---CcceEEEEee-cc
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR---TLELIKTYVT-ER  233 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~-~~  233 (326)
                      |++|++++.|..|-||.+.....+.......+|...|..+.|+|...+|+++|+|.+|++|+-.   .-++++++.. ..
T Consensus       117 G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~  196 (312)
T KOG0645|consen  117 GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN  196 (312)
T ss_pred             CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc
Confidence            9999999999999999987655554455567899999999999999999999999999999866   3467777753 44


Q ss_pred             ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                      .+-+++|++.|+.++.+..+...              ++|....    .....|.+++..++|.  ...+||++.|+.|+
T Consensus       197 TVW~~~F~~~G~rl~s~sdD~tv--------------~Iw~~~~----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~  256 (312)
T KOG0645|consen  197 TVWSLAFDNIGSRLVSCSDDGTV--------------SIWRLYT----DLSGMHSRALYDVPWD--NGVIASGGGDDAIR  256 (312)
T ss_pred             eEEEEEecCCCceEEEecCCcce--------------Eeeeecc----CcchhcccceEeeeec--ccceEeccCCCEEE
Confidence            79999999999888776543322              2222111    1123477899999998  67899999999999


Q ss_pred             EeecC
Q 020461          314 LHHFD  318 (326)
Q Consensus       314 l~~~~  318 (326)
                      ||.-.
T Consensus       257 lf~~s  261 (312)
T KOG0645|consen  257 LFKES  261 (312)
T ss_pred             EEEec
Confidence            98654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-32  Score=229.69  Aligned_cols=244  Identities=23%  Similarity=0.333  Sum_probs=211.1

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      ++..|+++.|+++|.+|+.|..+|.|.|||.++.+.+..+.+ |.+.|.+++|.  +..+.+|+.|+.|..+|++..+..
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            478899999999999999999999999999999999999999 99999999997  567899999999999998754321


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      .                                                   ..+.+|...|--+.|++++.++++|++|
T Consensus       294 ~---------------------------------------------------~~~~~H~qeVCgLkws~d~~~lASGgnD  322 (484)
T KOG0305|consen  294 V---------------------------------------------------STLQGHRQEVCGLKWSPDGNQLASGGND  322 (484)
T ss_pred             h---------------------------------------------------hhhhcccceeeeeEECCCCCeeccCCCc
Confidence            0                                                   0246788888899999999999999999


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEe--CCCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  244 (326)
                      +.+.|||..+.+....+   ..|.+.|.+++|+|- ...||+|+  .|+.|++||..+++.+........|..+.|++..
T Consensus       323 N~~~Iwd~~~~~p~~~~---~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  323 NVVFIWDGLSPEPKFTF---TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKY  399 (484)
T ss_pred             cceEeccCCCccccEEE---eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCC
Confidence            99999999665554444   479999999999994 55777764  6999999999999999999988999999999999


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +.++++.|....            .+.+|.......+..+.+|...|..+++||||..+++|+.|.++|+|++-++
T Consensus       400 kEi~sthG~s~n------------~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  400 KELLSTHGYSEN------------QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CEEEEecCCCCC------------cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            998888775432            4556666667778889999999999999999999999999999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-32  Score=235.78  Aligned_cols=241  Identities=22%  Similarity=0.394  Sum_probs=186.1

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCC----------------------------------------------
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----------------------------------------------   41 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~----------------------------------------------   41 (326)
                      .|+++|.++.||+||+|||+||.|+.|+||.+..                                              
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            7999999999999999999999999999997654                                              


Q ss_pred             --------------CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeE
Q 020461           42 --------------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL  107 (326)
Q Consensus        42 --------------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (326)
                                    .+.+..|+||.+.|..|+||. .++|+++|.|+|||||++...+++..|.                
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~----------------  407 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS----------------  407 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe----------------
Confidence                          011223579999999999986 4689999999999999998877776553                


Q ss_pred             EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCCCcEEEEECCCCcccccccc
Q 020461          108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDK  186 (326)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  186 (326)
                                                           |..-|+|++|+|. .++|++|+-|+.||||++...+...-.  
T Consensus       408 -------------------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~--  448 (712)
T KOG0283|consen  408 -------------------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN--  448 (712)
T ss_pred             -------------------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh--
Confidence                                                 4566889999994 579999999999999999876544321  


Q ss_pred             ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee---------ccceEEEEeCCCCCe-eEEecCCCcc
Q 020461          187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---------ERPVNAVTMSPLLDH-VVLGGGQDAS  256 (326)
Q Consensus       187 ~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~s~~~~~-~~~~~~~~~~  256 (326)
                        .-...|++++|.|||++.+.|+.+|.+++|+.+..+....+..         ...|.++.+.|.... ++++. .   
T Consensus       449 --Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-n---  522 (712)
T KOG0283|consen  449 --DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-N---  522 (712)
T ss_pred             --hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-C---
Confidence              2347799999999999999999999999999988777666532         235888998876554 33332 2   


Q ss_pred             eeEeecccCceeeeEeecccceeeeccccccCcc--eeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                           |.     .+++++......+..++|+...  =..-.|+.||++++++++|..|.+|++++.
T Consensus       523 -----DS-----rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  523 -----DS-----RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             -----CC-----ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence                 22     2444554333334445544322  245788999999999999999999998653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.2e-31  Score=216.49  Aligned_cols=289  Identities=21%  Similarity=0.279  Sum_probs=212.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCC----CcEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~   77 (326)
                      ..+..|..+++-+.|||+|-|+++|...|+||||+....+  +..+|+--.++|..++|+.|++++++.++-    |.+.
T Consensus        53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F  132 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF  132 (603)
T ss_pred             eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence            4567899999999999999999999999999999986544  345677789999999999999998877743    4566


Q ss_pred             EEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      +||..  ..+-.+. +...++++++.+...+-++....-    ..+.+..-.      .-+--...+.|..-|+++.|+|
T Consensus       133 ~~DSG--~SvGei~GhSr~ins~~~KpsRPfRi~T~sdD----n~v~ffeGP------PFKFk~s~r~HskFV~~VRysP  200 (603)
T KOG0318|consen  133 LWDSG--NSVGEITGHSRRINSVDFKPSRPFRIATGSDD----NTVAFFEGP------PFKFKSSFREHSKFVNCVRYSP  200 (603)
T ss_pred             EecCC--CccceeeccceeEeeeeccCCCceEEEeccCC----CeEEEeeCC------CeeeeecccccccceeeEEECC
Confidence            77753  3222222 223345555555443332221110    000110000      0011234567888999999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc--
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--  234 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--  234 (326)
                      +|..|++++.||.|.+||=++++.+..+....+|.+.|.++.|+||+..++|+|.|.++||||+.+.++++++.....  
T Consensus       201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~  280 (603)
T KOG0318|consen  201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE  280 (603)
T ss_pred             CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence            999999999999999999999999988887889999999999999999999999999999999999999999875433  


Q ss_pred             ---eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCc
Q 020461          235 ---VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY  311 (326)
Q Consensus       235 ---~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~  311 (326)
                         +.++ |.  .+++++..-.+              .+.+++.........+.||+..|++++.+||+++|.+||.||.
T Consensus       281 dqqvG~l-Wq--kd~lItVSl~G--------------~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  281 DQQVGCL-WQ--KDHLITVSLSG--------------TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             ceEEEEE-Ee--CCeEEEEEcCc--------------EEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence               2232 32  23333321111              2334444445566778999999999999999999999999999


Q ss_pred             EEEeecCCCc
Q 020461          312 VRLHHFDPDY  321 (326)
Q Consensus       312 i~l~~~~~~~  321 (326)
                      |.=|+....+
T Consensus       344 I~~W~~~~g~  353 (603)
T KOG0318|consen  344 INSWDSGSGT  353 (603)
T ss_pred             EEEEecCCcc
Confidence            9999876544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=221.03  Aligned_cols=234  Identities=21%  Similarity=0.421  Sum_probs=189.8

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      .+.|+|++|.  ...+++|..|.+|+|||.++-.+.+.+.||++.|.|+.|  +.+.+++||.|.+|++||.++++++..
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence            3678999875  457999999999999999999999999999999999988  466999999999999999999876543


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  169 (326)
                      +                                                    -+|...|..+.|+  +.++++++.|.+
T Consensus       273 l----------------------------------------------------ihHceaVLhlrf~--ng~mvtcSkDrs  298 (499)
T KOG0281|consen  273 L----------------------------------------------------IHHCEAVLHLRFS--NGYMVTCSKDRS  298 (499)
T ss_pred             H----------------------------------------------------hhhcceeEEEEEe--CCEEEEecCCce
Confidence            2                                                    1233444445554  368999999999


Q ss_pred             EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEE
Q 020461          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  249 (326)
                      |.+||+.+...+.......||.+.|..++|+.  ++++++|.|.+|++|++.++++++++...  -.+++....-+.+++
T Consensus       299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gH--kRGIAClQYr~rlvV  374 (499)
T KOG0281|consen  299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGH--KRGIACLQYRDRLVV  374 (499)
T ss_pred             eEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcc--cccceehhccCeEEE
Confidence            99999987665444445679999999999865  49999999999999999999999988533  223333334456777


Q ss_pred             ecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +|+.|.             .+++|+...+..+..+.||.+-|.++.|+  .+.+++|+.||+|++|++...
T Consensus       375 SGSSDn-------------tIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  375 SGSSDN-------------TIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             ecCCCc-------------eEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccc
Confidence            776664             46778887788888899999999999995  788999999999999998653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.7e-32  Score=220.11  Aligned_cols=287  Identities=20%  Similarity=0.267  Sum_probs=215.5

Q ss_pred             eeeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCC----Ceeeecc------C----cccceEEEEEcCCCCeEE
Q 020461            4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG----ERLGTYR------G----HNGAVWCCDVSRDSMTLI   68 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~----~~~~~~~------~----h~~~V~~~~~~~~~~~l~   68 (326)
                      ++++ |+.+|.+.+|+|-.. .|++++.|.+.|+|++...    .....++      +    -+..|++++|+.+|..|+
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            4566 999999999999887 8999999999999998741    1111111      1    235799999999999999


Q ss_pred             EEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        69 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                      +|+.||.+++|+...+.....-++..|+.+++|.-.+. ++..+.+....+      |+.      ..+.....+.-|..
T Consensus       252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttil------wd~------~~g~~~q~f~~~s~  319 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL------WDA------HTGTVKQQFEFHSA  319 (524)
T ss_pred             EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEE------Eec------cCceEEEeeeeccC
Confidence            99999999999987655444445678888998885444 444333433322      221      12334444555665


Q ss_pred             ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (326)
                      +-..+.|..+ ..|++++.|+.|+++.+...++..++.   +|.++|.++.|.|.|.+|+|+|.|++++||.+....+..
T Consensus       320 ~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~  395 (524)
T KOG0273|consen  320 PALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH  395 (524)
T ss_pred             CccceEEecC-ceEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence            5455666543 468999999999999998777776654   799999999999999999999999999999988777766


Q ss_pred             EEe-eccceEEEEeCCCCC--------eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461          228 TYV-TERPVNAVTMSPLLD--------HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (326)
Q Consensus       228 ~~~-~~~~~~~~~~s~~~~--------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  298 (326)
                      .+. +...+..+.|+|.+.        ..+++.+.+.             -+++|+...+.+++.+..|+.+|.+++|||
T Consensus       396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-------------tV~lwdv~~gv~i~~f~kH~~pVysvafS~  462 (524)
T KOG0273|consen  396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-------------TVKLWDVESGVPIHTLMKHQEPVYSVAFSP  462 (524)
T ss_pred             hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-------------eEEEEEccCCceeEeeccCCCceEEEEecC
Confidence            664 344566777776653        2233333222             356788888888899999999999999999


Q ss_pred             CCceEEeecCCCcEEEeecCCC
Q 020461          299 DGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       299 d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +|+++|+|+.||.|.+|+....
T Consensus       463 ~g~ylAsGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  463 NGRYLASGSLDGCVHIWSTKTG  484 (524)
T ss_pred             CCcEEEecCCCCeeEeccccch
Confidence            9999999999999999987654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.4e-32  Score=230.74  Aligned_cols=300  Identities=20%  Similarity=0.308  Sum_probs=209.2

Q ss_pred             eee-cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC--eEEEEeCCCcEEEEEcc
Q 020461            6 MKG-HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNVE   82 (326)
Q Consensus         6 ~~~-h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~d~~i~~wd~~   82 (326)
                      .+. |++|+.-++|+|.+.+|++|+.|+.+++||+..+.+.+.|+||.+.|+++.|+|+-.  .|++|..|+++++||++
T Consensus       100 wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~  179 (775)
T KOG0319|consen  100 WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN  179 (775)
T ss_pred             HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence            344 999999999999999999999999999999999999999999999999999999754  58999999999999998


Q ss_pred             CCcE-EEEEe-cCCCcceeeeecCC-----------------------------------------------eEEEEEcC
Q 020461           83 TGAQ-LFTFN-FDSPARSVDFAVGD-----------------------------------------------KLAVITTD  113 (326)
Q Consensus        83 ~~~~-~~~~~-~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~  113 (326)
                      +... +..+. +.+.+.++.+.+++                                               .+..++..
T Consensus       180 ~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~  259 (775)
T KOG0319|consen  180 DKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS  259 (775)
T ss_pred             cCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC
Confidence            5432 11110 11222222222111                                               11111110


Q ss_pred             cccee-----------------------------------ce--eeeee-----eecc----CC-----------C----
Q 020461          114 PFMEL-----------------------------------NS--AIHVK-----RIAR----DP-----------A----  132 (326)
Q Consensus       114 ~~~~~-----------------------------------~~--~~~~~-----~~~~----~~-----------~----  132 (326)
                      .....                                   ..  .+.+.     .+..    +.           .    
T Consensus       260 g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~l  339 (775)
T KOG0319|consen  260 GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHL  339 (775)
T ss_pred             ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceE
Confidence            00000                                   00  00000     0000    00           0    


Q ss_pred             ------------CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEE
Q 020461          133 ------------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAK  199 (326)
Q Consensus       133 ------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~  199 (326)
                                  +..+.....+.||...|.++....+|-+|+||+.|.++++|.++.+.. ...+....+|...|.++++
T Consensus       340 aVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~  419 (775)
T KOG0319|consen  340 AVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG  419 (775)
T ss_pred             EEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence                        001112224668888888888666678999999999999998844322 2233445689999999999


Q ss_pred             cCC-CCeEEEEeCCCeEEEeecCCcceEE----------EEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461          200 AAD-GSHFLTGSLDKSAKLWDARTLELIK----------TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (326)
Q Consensus       200 s~~-~~~l~s~s~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~  268 (326)
                      +.. ..+|+++|.|.++++|++...+...          ...++..+|+++++|+.. +++++++|..            
T Consensus       420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDkt------------  486 (775)
T KOG0319|consen  420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKT------------  486 (775)
T ss_pred             cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccc------------
Confidence            765 4579999999999999987521111          112567899999999855 4555566643            


Q ss_pred             eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                       .++|+.......+.++||...|++|.|+|..+.+||+|.|++|+||+++.
T Consensus       487 -aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~  536 (775)
T KOG0319|consen  487 -AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST  536 (775)
T ss_pred             -eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence             45676666677889999999999999999999999999999999999875

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.4e-32  Score=213.23  Aligned_cols=283  Identities=21%  Similarity=0.311  Sum_probs=220.3

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee--------ccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--------YRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~--------~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      ..|.+..+.|..|||||++|++||-||-|.+||.-+|+.-+.        |.-+..+|.|++|+.|.+.+++|+.||.|+
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            445667788999999999999999999999999998876543        345788999999999999999999999999


Q ss_pred             EEEccCCcEEEEEe--cCCCcceeeeecCCeEEEEE-cCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           78 LWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        78 ~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      +|.+.+|.++..|.  +...+.++.|+.++..++.. .+..            .+.....+|+.+..++||.+.|+.+.|
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t------------vRiHGlKSGK~LKEfrGHsSyvn~a~f  356 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT------------VRIHGLKSGKCLKEFRGHSSYVNEATF  356 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce------------EEEeccccchhHHHhcCccccccceEE
Confidence            99999999987774  44566777777554433322 1211            111223467788889999999999999


Q ss_pred             ecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEeec-
Q 020461          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTE-  232 (326)
Q Consensus       155 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-  232 (326)
                      +++|..+++++.||+|++|+.++.++..++... +...+|.++..-| +...++.+...++++|-+++ |+.++++... 
T Consensus       357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk  434 (508)
T KOG0275|consen  357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK  434 (508)
T ss_pred             cCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence            999999999999999999999999998887654 4567788887655 56689999999999999986 6788887643 


Q ss_pred             ---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC
Q 020461          233 ---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED  309 (326)
Q Consensus       233 ---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D  309 (326)
                         ...-+.+.+|-|+..++.| +|... +.+...            .+..-..+.-|...|-.++-+|..+.+|+=++|
T Consensus       435 REgGdFi~~~lSpkGewiYcig-ED~vl-YCF~~~------------sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED  500 (508)
T KOG0275|consen  435 REGGDFINAILSPKGEWIYCIG-EDGVL-YCFSVL------------SGKLERTLPVHEKDVIGLTHHPHQNLLASYSED  500 (508)
T ss_pred             ccCCceEEEEecCCCcEEEEEc-cCcEE-EEEEee------------cCceeeeeecccccccccccCcccchhhhhccc
Confidence               3566778899999877654 44432 122222            222223345577888899999999999999999


Q ss_pred             CcEEEee
Q 020461          310 GYVRLHH  316 (326)
Q Consensus       310 g~i~l~~  316 (326)
                      |.+++|.
T Consensus       501 gllKLWk  507 (508)
T KOG0275|consen  501 GLLKLWK  507 (508)
T ss_pred             chhhhcC
Confidence            9999994

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-31  Score=201.90  Aligned_cols=239  Identities=20%  Similarity=0.295  Sum_probs=190.5

Q ss_pred             CCceeEEEEccC-CCEEEeecCCCCeEEEecCCC-CeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcE
Q 020461           10 ERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus        10 ~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      .+.+..++|+++ .+.+++|+.||+++|||.... ..++.+++|...|.++.|++- ++.++++|.|++||+|+...++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            466789999987 468899999999999996433 578899999999999999984 55688889999999999865433


Q ss_pred             EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEee
Q 020461           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAG  165 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~  165 (326)
                                                                          +.+++||.+-|....|+|.- +.+++++
T Consensus       140 ----------------------------------------------------v~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen  140 ----------------------------------------------------VQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             ----------------------------------------------------eEeecCCccEEEEEecCCCCCCeEEEcc
Confidence                                                                33456788889999999964 6889999


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcc-eEEEEe-eccceEEEEeCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLE-LIKTYV-TERPVNAVTMSP  242 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~~~~~~~s~  242 (326)
                      .|+++++||++.......   ...|..++.++.|+. +...++||+.|+.|+.||+++.. ++..+. ++-.++.+.+||
T Consensus       168 gd~~l~lwdvr~~gk~~~---i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp  244 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMS---IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP  244 (311)
T ss_pred             CCceEEEEEecCCCceeE---EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence            999999999976433322   346888999999986 66789999999999999998753 333332 445799999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccce-eeeccccccCcceeEEEECC-CCceEEeecCCCcEEEee
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EEIGGVKGHFGPINALAFNP-DGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~v~~s~-d~~~lat~s~Dg~i~l~~  316 (326)
                      ....++++.+.|.             ..++|+...+ ..+....-|++-|..+.||+ ++.++|+++.|+.+.||+
T Consensus       245 h~~~lLaSasYDm-------------T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  245 HHASLLASASYDM-------------TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             chhhHhhhccccc-------------eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            9888887776554             3466766532 33445667899999999997 677899999999999997

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-31  Score=223.64  Aligned_cols=248  Identities=19%  Similarity=0.311  Sum_probs=212.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      +.+..|.+.|.++.|+|...+++++--+|.|.|||.++...++.|.-..-||.+..|-+-.+.+++|+.|..||+|+.++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            34556889999999999999999999999999999999999999988888999999998889999999999999999987


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ++.+.                                                    .+..|...|.+++.+|..++++|
T Consensus        87 ~ekV~----------------------------------------------------~FeAH~DyIR~iavHPt~P~vLt  114 (794)
T KOG0276|consen   87 GEKVK----------------------------------------------------TFEAHSDYIRSIAVHPTLPYVLT  114 (794)
T ss_pred             ceeeE----------------------------------------------------EeeccccceeeeeecCCCCeEEe
Confidence            65443                                                    34567788999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS  241 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s  241 (326)
                      +|+|-+|++||-...=...  +...||..-|+++++.| |.+.++++|.|++|++|.+.+..+..++. ++.-++|+++-
T Consensus       115 sSDDm~iKlW~we~~wa~~--qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy  192 (794)
T KOG0276|consen  115 SSDDMTIKLWDWENEWACE--QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYY  192 (794)
T ss_pred             cCCccEEEEeeccCceeee--eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEec
Confidence            9999999999986532221  22358999999999998 57789999999999999999998888886 45679999987


Q ss_pred             CCCCe-eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          242 PLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       242 ~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      +-++. .+++|++|.             .+++|+-++...++.+.||...|..+.|+|.-..++|||+||++|||+--
T Consensus       193 ~~gdkpylIsgaDD~-------------tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  193 TGGDKPYLISGADDL-------------TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK  257 (794)
T ss_pred             cCCCcceEEecCCCc-------------eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence            76654 334444442             36778888888899999999999999999999999999999999999854

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-31  Score=233.00  Aligned_cols=246  Identities=21%  Similarity=0.382  Sum_probs=203.5

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      +.-...+..++|+|...+++++--.|.|.+||..=+.++..|.+|.++|..++|+|...+++|||.|.+|++|+.++.++
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc   85 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC   85 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence            33456788999999999999999999999999999999999999999999999999999999999999999999887654


Q ss_pred             EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      +                                                    ..+.||...|..+.|++.-++|+++|+
T Consensus        86 l----------------------------------------------------ftL~GHlDYVRt~~FHheyPWIlSASD  113 (1202)
T KOG0292|consen   86 L----------------------------------------------------FTLLGHLDYVRTVFFHHEYPWILSASD  113 (1202)
T ss_pred             h----------------------------------------------------hhhccccceeEEeeccCCCceEEEccC
Confidence            3                                                    234578888889999999999999999


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-----------------------
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-----------------------  223 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-----------------------  223 (326)
                      |.+|+||+..+++++..+   .||..-|+|.+|+|....++++|.|.+||+||+...                       
T Consensus       114 DQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL  190 (1202)
T KOG0292|consen  114 DQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL  190 (1202)
T ss_pred             CCeEEEEeccCCceEEEE---ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence            999999999999888765   589999999999999999999999999999997421                       


Q ss_pred             ----ceEEEEe---eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461          224 ----ELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (326)
Q Consensus       224 ----~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  296 (326)
                          ..+-++.   +.+-+|.++|+|....+++ |++|.. +          .++.|+....-++-.+.||..+|.++-|
T Consensus       191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS-G~DDRq-V----------KlWrmnetKaWEvDtcrgH~nnVssvlf  258 (1202)
T KOG0292|consen  191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS-GADDRQ-V----------KLWRMNETKAWEVDTCRGHYNNVSSVLF  258 (1202)
T ss_pred             cCCcCeeeeeeecccccccceEEecCCcceEEe-cCCcce-e----------eEEEeccccceeehhhhcccCCcceEEe
Confidence                1122221   3456899999998765554 444421 1          2222333334456678999999999999


Q ss_pred             CCCCceEEeecCCCcEEEeecCC
Q 020461          297 NPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       297 s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +|....+.+.|+|++||+|++..
T Consensus       259 hp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  259 HPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             cCccceeEecCCCccEEEEeccc
Confidence            99999999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.1e-29  Score=236.10  Aligned_cols=292  Identities=14%  Similarity=0.213  Sum_probs=205.4

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----C----eeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEE
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----E----RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAK   77 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~----~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~   77 (326)
                      ..|...|.+++|+|+|++|++|+.|++|+||+....    .    .+..+. +...|.+++|++. +.+|++++.|++|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            448899999999999999999999999999997532    1    112232 3567899999874 67999999999999


Q ss_pred             EEEccCCcEEEEEe-cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           78 LWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      +||+.+++.+..+. +...+.++.+++ +..+++.+..     +..+.+|++..      +..+..+..+ ..+.++.|+
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----Dg~v~iWd~~~------~~~~~~~~~~-~~v~~v~~~  626 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----DGSVKLWSINQ------GVSIGTIKTK-ANICCVQFP  626 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----CCEEEEEECCC------CcEEEEEecC-CCeEEEEEe
Confidence            99999988777664 456678888885 3344333322     23445555432      2344445444 578889995


Q ss_pred             -cCCcEEEEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc------ceEE
Q 020461          156 -PLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------ELIK  227 (326)
Q Consensus       156 -~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~------~~~~  227 (326)
                       +++..|++|+.|+.|++||+++.+. ...   ..+|...|.++.|. ++.+|++++.|++|++||++.+      .++.
T Consensus       627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~---~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~  702 (793)
T PLN00181        627 SESGRSLAFGSADHKVYYYDLRNPKLPLCT---MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH  702 (793)
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceE---ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence             5688999999999999999987542 222   24799999999997 6789999999999999999753      4555


Q ss_pred             EEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec--cccccCcceeEEEECCCCceEE
Q 020461          228 TYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG--GVKGHFGPINALAFNPDGKSFS  304 (326)
Q Consensus       228 ~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~s~d~~~la  304 (326)
                      .+. +...+++++++|++..+++++ .|+. +..|+...... +.-+.........  ....|...|.+++|+|++.+|+
T Consensus       703 ~~~gh~~~i~~v~~s~~~~~lasgs-~D~~-v~iw~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lv  779 (793)
T PLN00181        703 SFMGHTNVKNFVGLSVSDGYIATGS-ETNE-VFVYHKAFPMP-VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLV  779 (793)
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEe-CCCE-EEEEECCCCCc-eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEE
Confidence            554 345678999999987655554 3432 33344322110 0001100000011  1234667899999999999999


Q ss_pred             eecCCCcEEEeecC
Q 020461          305 SGGEDGYVRLHHFD  318 (326)
Q Consensus       305 t~s~Dg~i~l~~~~  318 (326)
                      +|+.||.|+||++.
T Consensus       780 a~~~dG~I~i~~~~  793 (793)
T PLN00181        780 AANSTGNIKILEMV  793 (793)
T ss_pred             EecCCCcEEEEecC
Confidence            99999999999863

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.4e-31  Score=207.76  Aligned_cols=270  Identities=24%  Similarity=0.421  Sum_probs=206.1

Q ss_pred             eeeeecCCceeEEEEccCC---CEEEeecCCCCeEEEecCCCCe----eeeccCcccceEEEEEcCCCCeEEEEeCCCcE
Q 020461            4 ILMKGHERPLTYLKYNKDG---DLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVSRDSMTLITGSADQTA   76 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~---~~l~s~~~d~~v~iw~~~~~~~----~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i   76 (326)
                      .+..||.++|..+++-...   ..++++|.|.++++|..+.++.    +...+||.+.|-+++..+++..+++||.|.++
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l  217 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML  217 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence            4678999999977766433   3599999999999998887754    34456999999999999999999999999999


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ++|+..+......-...                          .. +-....+........++..+.||..+|.++.|++
T Consensus       218 kiWs~~~~~~~~~E~~s--------------------------~~-rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  218 KIWSVETDEEDELESSS--------------------------NR-RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             eecccCCCccccccccc--------------------------hh-hhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            99994332211000000                          00 0000011122234567888999999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc--eE-EEEe-ec
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LI-KTYV-TE  232 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~-~~~~-~~  232 (326)
                       ...+++++.|.+|+.||+.+++...++.    -.....++.++|...+|++|+.|..|++||+|++.  .+ +++. +.
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~  345 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK  345 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeee----cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence             6789999999999999999998876653    34678999999999999999999999999999753  22 2232 44


Q ss_pred             cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee-eeccccccCcceeEEEECCCCceEEeecCCCc
Q 020461          233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-EIGGVKGHFGPINALAFNPDGKSFSSGGEDGY  311 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~  311 (326)
                      .-+.++.++|.....+++++.|+.             .++||..... ++-.+.+|...|.++.|+ ++.++++|+.|.+
T Consensus       346 nwVssvkwsp~~~~~~~S~S~D~t-------------~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~  411 (423)
T KOG0313|consen  346 NWVSSVKWSPTNEFQLVSGSYDNT-------------VKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNK  411 (423)
T ss_pred             hhhhheecCCCCceEEEEEecCCe-------------EEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcce
Confidence            578999999999998888876653             3445544333 455678999999999997 5889999999999


Q ss_pred             EEEeecCC
Q 020461          312 VRLHHFDP  319 (326)
Q Consensus       312 i~l~~~~~  319 (326)
                      |+++.-.+
T Consensus       412 l~i~~~~~  419 (423)
T KOG0313|consen  412 LRIFKGSP  419 (423)
T ss_pred             EEEecccc
Confidence            99987665

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.9e-32  Score=214.42  Aligned_cols=239  Identities=23%  Similarity=0.404  Sum_probs=192.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..|.||.+.|.|++|..  +.|++||+|.+|++||.++|+++.++-+|...|..+.|+  ..+++|+|.|.++++||+..
T Consensus       231 ~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s  306 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS  306 (499)
T ss_pred             HhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence            35789999999998864  599999999999999999999999999999999999997  45899999999999999864


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ...+                                                 ....++.||...|+.+.|+.  +++++
T Consensus       307 ps~i-------------------------------------------------t~rrVLvGHrAaVNvVdfd~--kyIVs  335 (499)
T KOG0281|consen  307 PTDI-------------------------------------------------TLRRVLVGHRAAVNVVDFDD--KYIVS  335 (499)
T ss_pred             chHH-------------------------------------------------HHHHHHhhhhhheeeecccc--ceEEE
Confidence            3210                                                 12234568888888888865  59999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~  242 (326)
                      ++.|.+|++|++.+++.++++   .+|+..|-|+.+  .+.++++||.|.+|++||+..|.+++.+. ++..+.++-|..
T Consensus       336 ASgDRTikvW~~st~efvRtl---~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~  410 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEFVRTL---NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN  410 (499)
T ss_pred             ecCCceEEEEeccceeeehhh---hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence            999999999999999888766   478888888875  57799999999999999999999988875 456788888864


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeeccccee---------eeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE---------EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                        + -+++|+.|+             .+++|+.....         .+..+..|++.|..+.|  |.-.+++++.|.+|-
T Consensus       411 --k-rIVSGaYDG-------------kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtIL  472 (499)
T KOG0281|consen  411 --K-RIVSGAYDG-------------KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTIL  472 (499)
T ss_pred             --c-eeeeccccc-------------eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEE
Confidence              2 344555554             24455543221         23345679999999999  578899999999999


Q ss_pred             EeecCCC
Q 020461          314 LHHFDPD  320 (326)
Q Consensus       314 l~~~~~~  320 (326)
                      +|+|.+.
T Consensus       473 iWdFl~~  479 (499)
T KOG0281|consen  473 IWDFLNG  479 (499)
T ss_pred             EEEcCCC
Confidence            9999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=8.2e-31  Score=206.79  Aligned_cols=254  Identities=23%  Similarity=0.422  Sum_probs=203.7

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..|.||-..|..+++|+--.||++|+.|+.|+-||++..+.++.+.||-..|.|++.+|.-+.|++|+.|.++|+||+++
T Consensus       187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt  266 (460)
T KOG0285|consen  187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT  266 (460)
T ss_pred             EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ..                                                    .+.++.||.++|.++.+.|....+++
T Consensus       267 r~----------------------------------------------------~V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  267 RA----------------------------------------------------SVHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             cc----------------------------------------------------eEEEecCCCCcceeEEeecCCCceEE
Confidence            43                                                    34456789999999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~  242 (326)
                      |+.|++|++||++.++.+.++.   .|...+.+++.+|....+|+++.| .|+-|++-.++.++.+. +...+++++...
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns  370 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS  370 (460)
T ss_pred             ecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc
Confidence            9999999999999998776553   688999999999999999999987 58999998888777753 234566666654


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +  .++++|++. ..+..+|.+.+-.-.+.   .+....+.+ .-.+.|.+.+|...|..|+||..|.+|++|.-|.+
T Consensus       371 D--~v~~~G~dn-g~~~fwdwksg~nyQ~~---~t~vqpGSl-~sEagI~as~fDktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  371 D--GVLVSGGDN-GSIMFWDWKSGHNYQRG---QTIVQPGSL-ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             C--ceEEEcCCc-eEEEEEecCcCcccccc---cccccCCcc-ccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence            4  456655543 34445555443221111   000011111 12356899999999999999999999999987653

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=2.2e-29  Score=219.97  Aligned_cols=255  Identities=20%  Similarity=0.263  Sum_probs=188.4

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee-------------eeccCcccceEEEEEcC-CCCeEEEEeCCC
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------GTYRGHNGAVWCCDVSR-DSMTLITGSADQ   74 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-------------~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~   74 (326)
                      |-..|....+++++..+++++.+.....|+...+..+             ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3455666777888777888888888888876544322             13678999999999999 788999999999


Q ss_pred             cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      +|++||+.++....                                             .....+..+.+|...|.++.|
T Consensus        99 tIkIWdi~~~~~~~---------------------------------------------~~~~~l~~L~gH~~~V~~l~f  133 (493)
T PTZ00421         99 TIMGWGIPEEGLTQ---------------------------------------------NISDPIVHLQGHTKKVGIVSF  133 (493)
T ss_pred             EEEEEecCCCcccc---------------------------------------------ccCcceEEecCCCCcEEEEEe
Confidence            99999987542110                                             001234556789999999999


Q ss_pred             ecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461          155 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (326)
Q Consensus       155 ~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (326)
                      +|.+ .+|++++.|++|+|||+++++....+   .+|...|.+++|+|+|.+|++++.|++|++||+++++.+.++....
T Consensus       134 ~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~  210 (493)
T PTZ00421        134 HPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA  210 (493)
T ss_pred             CcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence            9986 68999999999999999988765544   4688899999999999999999999999999999999887765322


Q ss_pred             --ceEEEEeCCCCCeeEEecCCC--cceeEeecccCceeeeEeecccceeeecccc-ccCcceeEEEECCCCceEEeecC
Q 020461          234 --PVNAVTMSPLLDHVVLGGGQD--ASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-GHFGPINALAFNPDGKSFSSGGE  308 (326)
Q Consensus       234 --~~~~~~~s~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~lat~s~  308 (326)
                        ....+.|.+..+.+++++...  ...+..||.+...           ..+.... .+...+....|++|+.+|++|+.
T Consensus       211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-----------~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-----------SPYSTVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-----------CceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence              244567888777776655321  1233444433211           1111111 12345666789999999998874


Q ss_pred             -CCcEEEeecCCCce
Q 020461          309 -DGYVRLHHFDPDYF  322 (326)
Q Consensus       309 -Dg~i~l~~~~~~~~  322 (326)
                       |+.|++|+++...+
T Consensus       280 gDg~Iriwdl~~~~~  294 (493)
T PTZ00421        280 GEGNIRCFELMNERL  294 (493)
T ss_pred             CCCeEEEEEeeCCce
Confidence             99999999987643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1e-29  Score=217.76  Aligned_cols=294  Identities=20%  Similarity=0.267  Sum_probs=230.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.||...|..++||.+...++||+. ++++||+..+.++++++..-  .+.+..|.|.++++++|...|.+.+||+..
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            678899999999999999888887755 69999999999999998643  788899999999999999999999999988


Q ss_pred             CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCC-CCCCceEEEec-----cCccceeEEEEec
Q 020461           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILK-----GPQGRINRAVWGP  156 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~~~~~  156 (326)
                      ...+...+ +++.+.++...+++...+.++.     +..+.+|....... ..+...+..++     .-...|.++.+||
T Consensus       444 ~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-----DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  444 ASLVETIRAHDGAIWSISLSPDNKGFVTGSA-----DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             hhhhhhhhccccceeeeeecCCCCceEEecC-----CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence            76655443 5667777887777665444332     22333343221111 01111111111     1235688999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccce
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV  235 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~  235 (326)
                      ++++++.+--|.++++|-+.+-+...   ...||.-+|.|+++|||++.++|||.|.+|++|-++-|+|-+++. +...+
T Consensus       519 dgk~LaVsLLdnTVkVyflDtlKFfl---sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv  595 (888)
T KOG0306|consen  519 DGKLLAVSLLDNTVKVYFLDTLKFFL---SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV  595 (888)
T ss_pred             CCcEEEEEeccCeEEEEEecceeeee---eecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence            99999999999999999988765443   346999999999999999999999999999999999999988875 56789


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      .++.|-|....++++| .|+             .++.|+...-+.+..+.+|...|++++-+|+|.+++++|.|.+||+|
T Consensus       596 m~V~F~P~~~~FFt~g-KD~-------------kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  596 MSVQFLPKTHLFFTCG-KDG-------------KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             eEEEEcccceeEEEec-Ccc-------------eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence            9999999655555554 333             46778776677788899999999999999999999999999999999


Q ss_pred             ecCCCce
Q 020461          316 HFDPDYF  322 (326)
Q Consensus       316 ~~~~~~~  322 (326)
                      .-..+..
T Consensus       662 E~tde~~  668 (888)
T KOG0306|consen  662 ERTDEIL  668 (888)
T ss_pred             eccCcce
Confidence            8877543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-30  Score=204.37  Aligned_cols=233  Identities=23%  Similarity=0.361  Sum_probs=190.5

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      ..|+||.+++..++|+..|++|++||.|-.+++||..+ .++++.+.+|...|.++.|-|-|.+++|++.|.+|+.|++.
T Consensus       144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~  223 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD  223 (406)
T ss_pred             hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence            35899999999999999999999999999999999877 56788889999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCC-CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC----
Q 020461           83 TGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----  157 (326)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----  157 (326)
                      ++.++..+..+. -++.+....+..+.+.+..     +..+.+|..+      .+.+...+++|+-+|-+++|-|.    
T Consensus       224 tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-----dqtl~vW~~~------t~~~k~~lR~hEh~vEci~wap~~~~~  292 (406)
T KOG0295|consen  224 TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-----DQTLRVWVVA------TKQCKAELREHEHPVECIAWAPESSYP  292 (406)
T ss_pred             cceeEEeccCchHhEEEEEecCCeeEEEecCC-----CceEEEEEec------cchhhhhhhccccceEEEEecccccCc
Confidence            999998886543 2444444444444443322     2344555443      23344567788888888887642    


Q ss_pred             -----------CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461          158 -----------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       158 -----------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (326)
                                 ++++.+++.|++|++||+.++.++.++   .+|..-|..++|+|.|+||+++..|+++++||+++++|.
T Consensus       293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL---~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm  369 (406)
T KOG0295|consen  293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL---VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM  369 (406)
T ss_pred             chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE---ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence                       258899999999999999999888765   589999999999999999999999999999999999999


Q ss_pred             EEEe-eccceEEEEeCCCCCeeEEe
Q 020461          227 KTYV-TERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       227 ~~~~-~~~~~~~~~~s~~~~~~~~~  250 (326)
                      ..+. ++.-++++.|+.....++.+
T Consensus       370 k~~~ah~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  370 KTLEAHEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             eccCCCcceeEEEecCCCCceEEec
Confidence            8886 45568999999887755544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=3.5e-30  Score=198.74  Aligned_cols=209  Identities=30%  Similarity=0.457  Sum_probs=179.4

Q ss_pred             eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeee
Q 020461           47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR  126 (326)
Q Consensus        47 ~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (326)
                      .+.+|.+.|+.+.|+|+|.+|+|||.|..|-+|+....                                          
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd------------------------------------------   79 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD------------------------------------------   79 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc------------------------------------------
Confidence            45799999999999999999999999999999996421                                          


Q ss_pred             eccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-
Q 020461          127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-  205 (326)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-  205 (326)
                               .+...++++|.+.|..+.|.+++..++++|.|.+|+.||.++|+..+..   .+|...|.+++.+.-|.. 
T Consensus        80 ---------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~---k~h~~~vNs~~p~rrg~~l  147 (338)
T KOG0265|consen   80 ---------CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH---KGHTSFVNSLDPSRRGPQL  147 (338)
T ss_pred             ---------ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh---ccccceeeecCccccCCeE
Confidence                     1234456799999999999999999999999999999999999987654   478899999986666655 


Q ss_pred             EEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc
Q 020461          206 FLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (326)
Q Consensus       206 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  285 (326)
                      +.||+.|+++++||+|+.++++++....++.+++|...++.+++++-+.              .++.|+.........+.
T Consensus       148 v~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn--------------~ikvWd~r~~d~~~~ls  213 (338)
T KOG0265|consen  148 VCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN--------------DIKVWDLRKNDGLYTLS  213 (338)
T ss_pred             EEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC--------------ceeeeccccCcceEEee
Confidence            5578889999999999999999998888999999999999988876543              35667765566677789


Q ss_pred             ccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461          286 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       286 ~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~  323 (326)
                      ||..+|+.+..+|+|.++.+-+.|.++++|+++|--..
T Consensus       214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~  251 (338)
T KOG0265|consen  214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS  251 (338)
T ss_pred             cccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence            99999999999999999999999999999999986443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=4.5e-30  Score=203.94  Aligned_cols=250  Identities=22%  Similarity=0.364  Sum_probs=195.1

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC---CCeEEEEeCCCcEEEEEccCCc
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      |++=|.++...  +++|++|+-||++|+|+. .|+.+..+.||.++|..++|.-.   ...|+++|.|.++++|-++.++
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            55555555555  789999999999999996 58888899999999998887432   2369999999999999887665


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      ....                                                .+...+||...|.++...+++..+++|+
T Consensus       181 ~~~~------------------------------------------------~~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  181 NKVK------------------------------------------------ALKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             hhhh------------------------------------------------HHhHhcccccceeEEEecCCCCeEEeec
Confidence            3211                                                1222348999999999999999999999


Q ss_pred             CCCcEEEEECCCC-----ccc-----------------cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461          166 EDAIVRIWDTETG-----KLL-----------------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       166 ~d~~i~~wd~~~~-----~~~-----------------~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (326)
                      .|.+|++|+..+-     +..                 ..+....||..+|.++.|++ ...+.+++.|.+|+.||+.++
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence            9999999993210     000                 00112368999999999998 668999999999999999999


Q ss_pred             ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-e
Q 020461          224 ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-S  302 (326)
Q Consensus       224 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~  302 (326)
                      .++.++......+++..+|... ++++|+.|.. +..+|.|.+.-.+-         ...+.||...|.++.|+|... +
T Consensus       292 ~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~-irl~DPR~~~gs~v---------~~s~~gH~nwVssvkwsp~~~~~  360 (423)
T KOG0313|consen  292 GLKSTLTTNKSLNCISYSPLSK-LLASGSSDRH-IRLWDPRTGDGSVV---------SQSLIGHKNWVSSVKWSPTNEFQ  360 (423)
T ss_pred             cceeeeecCcceeEeecccccc-eeeecCCCCc-eeecCCCCCCCcee---------EEeeecchhhhhheecCCCCceE
Confidence            9999999889999999999554 5555555543 45667666543221         234679999999999999665 5


Q ss_pred             EEeecCCCcEEEeecCCCc
Q 020461          303 FSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       303 lat~s~Dg~i~l~~~~~~~  321 (326)
                      |++||.|+++++|+++...
T Consensus       361 ~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  361 LVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             EEEEecCCeEEEEEeccCC
Confidence            9999999999999998754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=8.2e-29  Score=187.75  Aligned_cols=286  Identities=18%  Similarity=0.247  Sum_probs=213.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee--eccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWN   80 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd   80 (326)
                      +-+++|.+.+..++|+-+|..|++++.|+++++|+++......  ..++|.+.|-.++|+|. ...|++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            3467899999999999999999999999999999998775544  34789999999999874 56899999999999999


Q ss_pred             ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      +..++++...........+.++|.+..+++....-     .+...+...       ..+..-..-.-.++.+.|+-.+.+
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD-----~it~id~r~-------~~~~~~~~~~~e~ne~~w~~~nd~  161 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDD-----RITFIDART-------YKIVNEEQFKFEVNEISWNNSNDL  161 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc-----cEEEEEecc-------cceeehhcccceeeeeeecCCCCE
Confidence            99999998887777777788887666555543321     111111100       011111112234667788877777


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEE
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~  239 (326)
                      |+--...|+|.|.....-+.+..+   .+|.....|+.|+|+|++||+|+.|-.+-+||++..-|++.+. .+-+++.++
T Consensus       162 Fflt~GlG~v~ILsypsLkpv~si---~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS  238 (313)
T KOG1407|consen  162 FFLTNGLGCVEILSYPSLKPVQSI---KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS  238 (313)
T ss_pred             EEEecCCceEEEEecccccccccc---ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE
Confidence            776677899999887755554444   5799999999999999999999999999999999988888885 567899999


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC---------C
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED---------G  310 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D---------g  310 (326)
                      |+-++..++.+ ++|- +            +.+....++..+..++ +.++...|+|+|...+||-++.|         |
T Consensus       239 FS~dg~~lASa-SEDh-~------------IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag  303 (313)
T KOG1407|consen  239 FSHDGRMLASA-SEDH-F------------IDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAG  303 (313)
T ss_pred             eccCcceeecc-Cccc-e------------EEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccc
Confidence            99998877654 3332 2            2223333444444443 67889999999999999888764         6


Q ss_pred             cEEEeecCC
Q 020461          311 YVRLHHFDP  319 (326)
Q Consensus       311 ~i~l~~~~~  319 (326)
                      .+++|=+.+
T Consensus       304 ~vKiFG~~~  312 (313)
T KOG1407|consen  304 TVKIFGLSN  312 (313)
T ss_pred             eeEEecCCC
Confidence            788876654

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.4e-29  Score=218.04  Aligned_cols=197  Identities=19%  Similarity=0.315  Sum_probs=156.4

Q ss_pred             ceeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCC-------CeeeeccCcccceEEEEEcCCC-CeEEEEeCC
Q 020461            3 PILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSAD   73 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d   73 (326)
                      |.++.||.+.|.+++|+| ++++|++|+.|++|++|++.++       +.+..+.+|...|.+++|+|++ ++|++++.|
T Consensus        68 ~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         68 PPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             CceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            457899999999999999 8899999999999999999765       3466789999999999999975 689999999


Q ss_pred             CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      ++|++||+++++...                                                    .+.+|...|.+++
T Consensus       148 gtVrIWDl~tg~~~~----------------------------------------------------~l~~h~~~V~sla  175 (493)
T PTZ00421        148 MVVNVWDVERGKAVE----------------------------------------------------VIKCHSDQITSLE  175 (493)
T ss_pred             CEEEEEECCCCeEEE----------------------------------------------------EEcCCCCceEEEE
Confidence            999999998754321                                                    2345677899999


Q ss_pred             EecCCcEEEEeeCCCcEEEEECCCCccccccccccCccee-eEEEEEcCCCCeEEEEe----CCCeEEEeecCCcc-eEE
Q 020461          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGS----LDKSAKLWDARTLE-LIK  227 (326)
Q Consensus       154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~s~s----~dg~i~iwd~~~~~-~~~  227 (326)
                      |+|++..|++++.|++|++||+++++.+..+   .+|... ...+.|.+++..+++++    .|++|++||+++.. ++.
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl---~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~  252 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV---EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS  252 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCCcEEEEE---ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence            9999999999999999999999988776554   356543 34667888888887764    47999999998754 333


Q ss_pred             EEe--eccceEEEEeCCCCCeeEEecCCC
Q 020461          228 TYV--TERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       228 ~~~--~~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      ...  ....+....++++++.+++++..|
T Consensus       253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgD  281 (493)
T PTZ00421        253 TVDLDQSSALFIPFFDEDTNLLYIGSKGE  281 (493)
T ss_pred             EeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence            322  123455567889988888776433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.1e-28  Score=190.50  Aligned_cols=248  Identities=20%  Similarity=0.260  Sum_probs=190.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC--CCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~--d~~i~~wd~   81 (326)
                      ..++.....|.++.|+++|.+|++++.|-+++|||..++..+.++..+.-.|..+.|......++.++.  |.+||.-++
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            455556788999999999999999999999999999999999999888888888888766666655554  788888776


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .+++                                                    .++.+.||...|+.+..+|-+..+
T Consensus        88 ~dNk----------------------------------------------------ylRYF~GH~~~V~sL~~sP~~d~F  115 (311)
T KOG1446|consen   88 HDNK----------------------------------------------------YLRYFPGHKKRVNSLSVSPKDDTF  115 (311)
T ss_pred             ecCc----------------------------------------------------eEEEcCCCCceEEEEEecCCCCeE
Confidence            5543                                                    455678999999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc--ceEEEEee----ccce
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVT----ERPV  235 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~----~~~~  235 (326)
                      ++++.|++|++||++..++...+.     ...-...+++|+|-.+|++.....|++||+|+.  .+..++..    ....
T Consensus       116 lS~S~D~tvrLWDlR~~~cqg~l~-----~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew  190 (311)
T KOG1446|consen  116 LSSSLDKTVRLWDLRVKKCQGLLN-----LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEW  190 (311)
T ss_pred             EecccCCeEEeeEecCCCCceEEe-----cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccce
Confidence            999999999999999777654332     223346789999999999998889999999975  44555532    3467


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCc---ceeEEEECCCCceEEeecCCCcE
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG---PINALAFNPDGKSFSSGGEDGYV  312 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s~d~~~lat~s~Dg~i  312 (326)
                      +.+.|||+|+.++++...+..  ...|--.|.            ....+.++..   --...+|+||++++.+|+.||+|
T Consensus       191 ~~l~FS~dGK~iLlsT~~s~~--~~lDAf~G~------------~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  191 TDLEFSPDGKSILLSTNASFI--YLLDAFDGT------------VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI  256 (311)
T ss_pred             eeeEEcCCCCEEEEEeCCCcE--EEEEccCCc------------EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence            889999999998887654432  222222222            1222222221   12578899999999999999999


Q ss_pred             EEeecCCCce
Q 020461          313 RLHHFDPDYF  322 (326)
Q Consensus       313 ~l~~~~~~~~  322 (326)
                      .+|+++....
T Consensus       257 ~vw~~~tg~~  266 (311)
T KOG1446|consen  257 HVWNLETGKK  266 (311)
T ss_pred             EEEEcCCCcE
Confidence            9999965543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=3.1e-29  Score=202.38  Aligned_cols=249  Identities=22%  Similarity=0.329  Sum_probs=205.7

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .+++||...|+.+.|+|+...+++++.|..|+||...+.......+.|.++|+.+..+|.|+||++++.|++.-+.|+++
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~  334 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS  334 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence            57899999999999999999999999999999999888888878889999999999999999999999999999999988


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      +.++.....+                                                  +..-.+++.+|+|||-.|.+
T Consensus       335 g~~lt~vs~~--------------------------------------------------~s~v~~ts~~fHpDgLifgt  364 (506)
T KOG0289|consen  335 GSQLTVVSDE--------------------------------------------------TSDVEYTSAAFHPDGLIFGT  364 (506)
T ss_pred             CcEEEEEeec--------------------------------------------------cccceeEEeeEcCCceEEec
Confidence            8765432211                                                  01123677899999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc--ceEEEEeC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMS  241 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~s  241 (326)
                      |..|+.|++||+.++.....   ..+|.++|.+++|+.+|-+|++++.|+.|++||+|.-+.++++..+.  .++.+.|.
T Consensus       365 gt~d~~vkiwdlks~~~~a~---Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTNVAK---FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             cCCCceEEEEEcCCcccccc---CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc
Confidence            99999999999998775444   45899999999999999999999999999999999988888887554  59999999


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +.|..+.++| ++- .+..++...          ..-.+...+..|.+..+.+.|...-++++++|.|..++|+.+
T Consensus       442 ~SGt~L~~~g-~~l-~Vy~~~k~~----------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  442 QSGTYLGIAG-SDL-QVYICKKKT----------KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             CCCCeEEeec-cee-EEEEEeccc----------ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            9998888773 321 122222111          122334456678889999999999999999999999998765

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.2e-28  Score=212.99  Aligned_cols=236  Identities=18%  Similarity=0.216  Sum_probs=172.6

Q ss_pred             ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCe
Q 020461           28 CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK  106 (326)
Q Consensus        28 ~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (326)
                      |+.++.+++|+......+..+.+|.++|.+++|+|+ +++|++|+.|++|++||+.++.....                 
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----------------  112 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----------------  112 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------------
Confidence            667889999998777788889999999999999996 78999999999999999975421000                 


Q ss_pred             EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEEeeCCCcEEEEECCCCccccccc
Q 020461          107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESD  185 (326)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~  185 (326)
                                                 .-..+...+.+|...|.+++|+|++.. +++++.|++|++||+++++....+ 
T Consensus       113 ---------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i-  164 (568)
T PTZ00420        113 ---------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI-  164 (568)
T ss_pred             ---------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE-
Confidence                                       000123345678899999999999875 579999999999999988765443 


Q ss_pred             cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccce-----EEEEeCCCCCeeEEecCCCc--ce
Q 020461          186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPV-----NAVTMSPLLDHVVLGGGQDA--SA  257 (326)
Q Consensus       186 ~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~-----~~~~~s~~~~~~~~~~~~~~--~~  257 (326)
                         .|...|.+++|+++|.+|++++.|+.|++||+++++.+.++.. ...+     ....+++++..++++|.++.  ..
T Consensus       165 ---~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~  241 (568)
T PTZ00420        165 ---NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE  241 (568)
T ss_pred             ---ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence               2456799999999999999999999999999999998887753 2222     22335577777776665432  12


Q ss_pred             eEeecccCceeeeEeecccceeeec--cccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461          258 VTTTDHRAGKFEAKFFDKILQEEIG--GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      +.+||.+.           ...++.  .+..+.+.+.-....++|.++++|+.|++||+|.+..+++
T Consensus       242 VkLWDlr~-----------~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        242 MKLWDLKN-----------TTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             EEEEECCC-----------CCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence            33444332           112222  1223334444444466799999999999999999987754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.2e-30  Score=203.72  Aligned_cols=279  Identities=20%  Similarity=0.267  Sum_probs=200.7

Q ss_pred             eeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      |.||.+.|.|++=+|.. ..+++|+.||.|+|||+...++..+|++|.+.|..|++..  ..++++|.|++|+.|-++..
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~  139 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP  139 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence            58999999999999976 7899999999999999999999999999999999999876  67899999999999988753


Q ss_pred             cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEE
Q 020461           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIIS  163 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s  163 (326)
                       ...++-.+.....++-...+...+.+++       .+.+|+..++      .++..+.-....|.++.|+|... .|++
T Consensus       140 -p~~tilg~s~~~gIdh~~~~~~FaTcGe-------~i~IWD~~R~------~Pv~smswG~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  140 -PLHTILGKSVYLGIDHHRKNSVFATCGE-------QIDIWDEQRD------NPVSSMSWGADSISSVKFNPVETSILAS  205 (433)
T ss_pred             -cceeeeccccccccccccccccccccCc-------eeeecccccC------CccceeecCCCceeEEecCCCcchheee
Confidence             4444433333333333322333222221       2344544433      23333443445688899999765 6678


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce-EEEE-eeccceEEEEeC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTERPVNAVTMS  241 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~~~~~~~s  241 (326)
                      |+.|+.|.|+|++++++++.+..    ...-..++|+|.+-.+++|++|..++.+|++..+. +..+ .+...+..+.|+
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~KVi~----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKKVIL----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             eccCCceEEEecccCCccceeee----eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence            88999999999999988776532    23457889999999999999999999999986543 2222 244578899999


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-cccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      |.|..+++++ .|..             +++|....+..-..+ ......|.+|.||-|.+++++||.|+.||||.--
T Consensus       282 ptG~Efvsgs-yDks-------------IRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  282 PTGQEFVSGS-YDKS-------------IRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             CCcchhcccc-ccce-------------EEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            9999877654 3332             233332221110000 0012358999999999999999999999999753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.1e-28  Score=212.28  Aligned_cols=306  Identities=22%  Similarity=0.320  Sum_probs=221.8

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      +..|+++|..++|+|+..+++||+.|-+|++|+.++.+++.++.||-..|..+.|++.-.+++|+|.|.|||+|+.++++
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence            45699999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             EEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeecc------CCC-------------CCCC--c--eEEE
Q 020461           86 QLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR------DPA-------------DQGG--E--SVLI  141 (326)
Q Consensus        86 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------------~~~~--~--~~~~  141 (326)
                      ++..+..+ .-+.+..|+|.+..++.++     ++..+++|++.-      .+.             +--+  .  .-.+
T Consensus       127 ~iavltGHnHYVMcAqFhptEDlIVSaS-----LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  127 CIAVLTGHNHYVMCAQFHPTEDLIVSAS-----LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV  201 (1202)
T ss_pred             eEEEEecCceEEEeeccCCccceEEEec-----ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence            99887643 4466677888555544332     233444443311      010             0000  1  1246


Q ss_pred             eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      ++||...|+.++|+|.-+.|++|++|..|++|..+.-+. -++....+|...|.++-|+|....+++.|+|++|++||+.
T Consensus       202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             ecccccccceEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence            789999999999999999999999999999999864332 2445567999999999999999999999999999999999


Q ss_pred             CcceEEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeec-ccC------------ceeeeEeecccceee--ecccc
Q 020461          222 TLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTD-HRA------------GKFEAKFFDKILQEE--IGGVK  285 (326)
Q Consensus       222 ~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d-~~~------------~~~~~~~~~~~~~~~--~~~~~  285 (326)
                      ....++++..+ ....+++-+|..+.++++ .+.+..++..+ .|.            ..-.++.++..+.+.  +..++
T Consensus       281 kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr  359 (1202)
T KOG0292|consen  281 KRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLR  359 (1202)
T ss_pred             cccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEecc
Confidence            99999999654 467889999988766554 33333333222 110            011123333222111  11122


Q ss_pred             c---cCcceeEEEECCCCceEEee-cCC-CcEEEeecC
Q 020461          286 G---HFGPINALAFNPDGKSFSSG-GED-GYVRLHHFD  318 (326)
Q Consensus       286 ~---h~~~v~~v~~s~d~~~lat~-s~D-g~i~l~~~~  318 (326)
                      .   -..++.++.|+|....+..+ +.| |.--|..+.
T Consensus       360 ~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip  397 (1202)
T KOG0292|consen  360 RPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP  397 (1202)
T ss_pred             CCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence            1   23578899999976654434 333 444444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-29  Score=210.21  Aligned_cols=239  Identities=19%  Similarity=0.305  Sum_probs=198.5

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      .-+-+|.+..|-.-.+++++|+.|..||+|+..+++.+..|.+|...|.+++.+|...+++|+|.|.+||+||.+.+-  
T Consensus        53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w--  130 (794)
T KOG0276|consen   53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW--  130 (794)
T ss_pred             ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce--
Confidence            345677788888888999999999999999999999999999999999999999999999999999999999986431  


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGE  166 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~  166 (326)
                                                                       .+..+++||...|.+++|+|.. ..|++++-
T Consensus       131 -------------------------------------------------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen  131 -------------------------------------------------ACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             -------------------------------------------------eeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence                                                             1234567899999999999965 68999999


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCC
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL  243 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~  243 (326)
                      |++|++|.+.+..+..++.   +|...|.++++-+.  .++|+||+.|.+|++||.++..|++++. +...++.++|+|.
T Consensus       162 DrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~  238 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE  238 (794)
T ss_pred             cccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence            9999999998777666553   89999999999864  4699999999999999999999999987 5678999999999


Q ss_pred             CCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461          244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      ...+++ |++|+.             .++|...+-..-..+..--++|+||+-.++...+|.|.+.|.|.+
T Consensus       239 lpiiis-gsEDGT-------------vriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  239 LPIIIS-GSEDGT-------------VRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CcEEEE-ecCCcc-------------EEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            876665 455542             345555443333333334478999999998888999998887754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=5.2e-29  Score=221.65  Aligned_cols=269  Identities=22%  Similarity=0.340  Sum_probs=200.8

Q ss_pred             CceeeeecCCceeEEEEccCCCEEEeec--CCCCeEEEecCC------------CCeeeeccCcccceEEEEEcCCCCeE
Q 020461            2 RPILMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADN------------GERLGTYRGHNGAVWCCDVSRDSMTL   67 (326)
Q Consensus         2 ~~~~~~~h~~~i~~~~~s~~~~~l~s~~--~d~~v~iw~~~~------------~~~~~~~~~h~~~V~~~~~~~~~~~l   67 (326)
                      .|..+..++..|..++.+|||..++||+  .|+.++||+.+.            ...+.+...|.+.|+|+.|+|||++|
T Consensus         5 kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l   84 (942)
T KOG0973|consen    5 KPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL   84 (942)
T ss_pred             cccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence            3566666777899999999999999999  999999997642            12234567899999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        68 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                      |+||.|+.|.+|.-.....-..+                   ..++..               ...+.-..+..+++|.+
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~f-------------------gs~g~~---------------~~vE~wk~~~~l~~H~~  130 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVF-------------------GSTGGA---------------KNVESWKVVSILRGHDS  130 (942)
T ss_pred             eeccCcceEEEeeecccCCcccc-------------------cccccc---------------cccceeeEEEEEecCCC
Confidence            99999999999987531000000                   000000               00011245677889999


Q ss_pred             ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (326)
                      .|..++|+|++.++++++.|++|.+|+.++.+.+..+   .+|...|..+.|+|-|+||++-+.|++|++|+.....+.+
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl---~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k  207 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL---RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK  207 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccceeeeee---ecccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence            9999999999999999999999999999988665544   5899999999999999999999999999999977766655


Q ss_pred             EEee-------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-
Q 020461          228 TYVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-  299 (326)
Q Consensus       228 ~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-  299 (326)
                      .+..       .....-+.|||+|.++++.-+..+          +...+.+.++.+-.--..+-||.+++.+++|+|. 
T Consensus       208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~----------~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l  277 (942)
T KOG0973|consen  208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG----------GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL  277 (942)
T ss_pred             eeccchhhCCCcceeeecccCCCcCeecchhhccC----------CcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence            5532       234667889999999887643221          1112222222222212346789999999999991 


Q ss_pred             ----Cc------------eEEeecCCCcEEEeec
Q 020461          300 ----GK------------SFSSGGEDGYVRLHHF  317 (326)
Q Consensus       300 ----~~------------~lat~s~Dg~i~l~~~  317 (326)
                          .+            .+|+||.|++|.||..
T Consensus       278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T  311 (942)
T KOG0973|consen  278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT  311 (942)
T ss_pred             hccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence                11            5899999999999975

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=205.99  Aligned_cols=239  Identities=18%  Similarity=0.308  Sum_probs=198.1

Q ss_pred             cCCceeEEEEccCCCE-EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            9 HERPLTYLKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~-l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      ..++|.+++|||...+ +|++++ -.+.||+..+....+++......|.+++|..||++|+.|+..|.|+++|+++..  
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--  101 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--  101 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH--
Confidence            3467999999997664 444433 478999998888888888889999999999999999999999999999965421  


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGE  166 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~  166 (326)
                                                                        .+..+.+|+.++....|+|++. .+++|++
T Consensus       102 --------------------------------------------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sD  131 (487)
T KOG0310|consen  102 --------------------------------------------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSD  131 (487)
T ss_pred             --------------------------------------------------HHHHHhhccCceeEEEecccCCeEEEecCC
Confidence                                                              1223467888999999999765 6678999


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCC
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLL  244 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~  244 (326)
                      |+.+++||+.++..   .....+|...|.+.+++|. +..++|||+||+|++||.++. ..+.++.++.++..+.+-|.+
T Consensus       132 d~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg  208 (487)
T KOG0310|consen  132 DKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG  208 (487)
T ss_pred             CceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC
Confidence            99999999988763   2234689999999999986 447999999999999999987 788888899999999999999


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeecccc-eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      ..++++||+               .++.||... ++.+..+..|..+|+|+++..++..|.|||-|+.|++|+..
T Consensus       209 s~iasAgGn---------------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  209 SLIASAGGN---------------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             CEEEEcCCC---------------eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            999988875               467788763 44555556699999999999999999999999999998844

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=8.3e-29  Score=192.84  Aligned_cols=292  Identities=19%  Similarity=0.306  Sum_probs=195.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee--eeccC--cccceEEEEEcCCCC-eEEEEeCCCcEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRG--HNGAVWCCDVSRDSM-TLITGSADQTAKL   78 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~--~~~~~--h~~~V~~~~~~~~~~-~l~s~~~d~~i~~   78 (326)
                      -+|+||.+.|++++||.||++|++++.|++|+||++.+-+..  +.++.  .-+.-+.+.|+||.+ .++++-...++++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            578999999999999999999999999999999998764221  11110  011235678999976 4556667778999


Q ss_pred             EEccC---CcE----EE--EEec----CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC
Q 020461           79 WNVET---GAQ----LF--TFNF----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (326)
Q Consensus        79 wd~~~---~~~----~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (326)
                      |-+..   |..    +.  ...+    .-++..+-...+.+++..+..     ...+.+|.+.       |+.+..+...
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~-----dt~i~lw~lk-------Gq~L~~idtn  227 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL-----DTKICLWDLK-------GQLLQSIDTN  227 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC-----CCcEEEEecC-------Cceeeeeccc
Confidence            97632   210    11  1111    122333333444444433322     2233344332       3444445555


Q ss_pred             ccceeEEEEecCCcEEEEeeCCCcEEEEEC---CCCc--cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDT---ETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~---~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      +..-+.++.||+|+++++++.--.|++|.+   +.|+  .+.....+.||+..|+.++|+++...++|.|.||++++||.
T Consensus       228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence            566677899999999999999999999986   2332  22334456799999999999999999999999999999997


Q ss_pred             CC-------cceEEEEe-----eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC
Q 020461          221 RT-------LELIKTYV-----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF  288 (326)
Q Consensus       221 ~~-------~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~  288 (326)
                      .-       ...++...     ......-+.++|+++.++++.+.+-..+...+...       ++     ++  -..|.
T Consensus       308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~-------~~-----~~--e~~h~  373 (420)
T KOG2096|consen  308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD-------YP-----EL--EDIHS  373 (420)
T ss_pred             cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc-------ch-----hH--HHhhc
Confidence            42       22233221     12234478999999999998776643333222110       01     11  13588


Q ss_pred             cceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461          289 GPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       289 ~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      +.|.+++|+|+|+++|||+ |..+|+++--|.++
T Consensus       374 ~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg~~  406 (420)
T KOG2096|consen  374 TTISSISYSSDGKYIATCG-DRYVRVIRNTPGWH  406 (420)
T ss_pred             CceeeEEecCCCcEEeeec-ceeeeeecCCCchh
Confidence            9999999999999999998 78899988767664

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.1e-28  Score=214.40  Aligned_cols=234  Identities=24%  Similarity=0.442  Sum_probs=190.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEec-CCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      ..+.+|...|..++|+|+++++++++.|++++||++ ..+..++++++|...|++++|+|+++++++|+.|++||+||++
T Consensus       197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            445889999999999999999999999999999999 5568899999999999999999999999999999999999999


Q ss_pred             CCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCc--eEEEeccCccc--eeEEEEecC
Q 020461           83 TGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE--SVLILKGPQGR--INRAVWGPL  157 (326)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--i~~~~~~~~  157 (326)
                      ++++...+.. ..++..+.+.+++..++.+..     +..+.+|++..      +.  ....+.++...  ++.+.|+|+
T Consensus       277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-----d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~fsp~  345 (456)
T KOG0266|consen  277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASY-----DGTIRVWDLET------GSKLCLKLLSGAENSAPVTSVQFSPN  345 (456)
T ss_pred             CCeEEEeeeccCCceEEEEECCCCCEEEEcCC-----CccEEEEECCC------CceeeeecccCCCCCCceeEEEECCC
Confidence            9999888865 457777888877766665432     33445555432      22  23455555544  899999999


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcce---eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--  232 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--  232 (326)
                      +.++++++.|+.+++||+..+.......   +|..   .+.+...++.+.++++|+.|+.|++||+.++..+..+...  
T Consensus       346 ~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~  422 (456)
T KOG0266|consen  346 GKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK  422 (456)
T ss_pred             CcEEEEecCCCeEEEEEccCCcceeeec---ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCC
Confidence            9999999999999999999888776654   3444   4455566889999999999999999999998888777644  


Q ss_pred             cceEEEEeCCCCCeeEEec
Q 020461          233 RPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~  251 (326)
                      ..+..++++|....++..+
T Consensus       423 ~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  423 AAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             CceeccccCCCcCeeeecC
Confidence            5677888888877776655

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=3.9e-28  Score=212.47  Aligned_cols=276  Identities=26%  Similarity=0.445  Sum_probs=214.3

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee-ccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      |...+.+..|.  +.++.+++.|.++.+|+..++..+.. +.+|.+.|+++++..-+.++++|+.|.++|+||..+|+++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            55667888888  56799999999999999999999888 9999999999999876789999999999999999999999


Q ss_pred             EEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           88 FTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        88 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      .++..+ ..+.++...  ....+ +    ...+..+.+|.+.      .+..+..+.+|.++|+++..+  +.++++|+.
T Consensus       285 ~~l~gh~stv~~~~~~--~~~~~-s----gs~D~tVkVW~v~------n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~  349 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTID--PFLLV-S----GSRDNTVKVWDVT------NGACLNLLRGHTGPVNCVQLD--EPLLVSGSY  349 (537)
T ss_pred             EEecCCCceEEEEEcc--CceEe-e----ccCCceEEEEecc------CcceEEEeccccccEEEEEec--CCEEEEEec
Confidence            988743 333333221  11111 1    1123345556553      456778888899999999998  789999999


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCCC
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLD  245 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~  245 (326)
                      |++|++||+.++++++.+.   +|...|.++.+... ..+++|+.|++|++||++++ +|+..+.....+. ..+...++
T Consensus       350 d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~  424 (537)
T KOG0274|consen  350 DGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDN  424 (537)
T ss_pred             CceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-cccccccc
Confidence            9999999999999887764   79999999988775 79999999999999999999 8888876543322 22233334


Q ss_pred             eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461          246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      .++.+.. |+             .+++|+...++.+..+.+ |.+.|..+++.  ...+++++.||++++|++++.-+
T Consensus       425 ~Lvs~~a-D~-------------~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  425 FLVSSSA-DG-------------TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             eeEeccc-cc-------------cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence            4444332 22             467788877777777887 67889988876  57788899999999999987543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=8.7e-28  Score=206.05  Aligned_cols=299  Identities=26%  Similarity=0.389  Sum_probs=202.5

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +..+.||+.+|+++.|+..|.+|+|||.|+.|.+||+-..+-...++||...|+..-|..+.+++++.|.|+.||+||+.
T Consensus       100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~  179 (888)
T KOG0306|consen  100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE  179 (888)
T ss_pred             eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence            46788999999999999999999999999999999998877788889999999888887777889999999999999986


Q ss_pred             CCcEEEEE-----------------------------ec--C---------------------CCcceeeee--cCCeEE
Q 020461           83 TGAQLFTF-----------------------------NF--D---------------------SPARSVDFA--VGDKLA  108 (326)
Q Consensus        83 ~~~~~~~~-----------------------------~~--~---------------------~~~~~~~~~--~~~~~~  108 (326)
                      +..+..+.                             ..  +                     +..+.+.+.  ..+.++
T Consensus       180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~  259 (888)
T KOG0306|consen  180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL  259 (888)
T ss_pred             cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence            54321111                             00  0                     000000000  001111


Q ss_pred             EEE-----------------------------------------------------------------------------
Q 020461          109 VIT-----------------------------------------------------------------------------  111 (326)
Q Consensus       109 ~~~-----------------------------------------------------------------------------  111 (326)
                      ++.                                                                             
T Consensus       260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv  339 (888)
T KOG0306|consen  260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV  339 (888)
T ss_pred             EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence            100                                                                             


Q ss_pred             --cCccc---eece--e----------ee-------ee--eeccCC---CCCCCceEEEeccC---------ccceeEEE
Q 020461          112 --TDPFM---ELNS--A----------IH-------VK--RIARDP---ADQGGESVLILKGP---------QGRINRAV  153 (326)
Q Consensus       112 --~~~~~---~~~~--~----------~~-------~~--~~~~~~---~~~~~~~~~~~~~~---------~~~i~~~~  153 (326)
                        .+...   .+..  .          +.       +.  .+..+.   ....+..+..+.-+         .+.+.+..
T Consensus       340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~  419 (888)
T KOG0306|consen  340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASK  419 (888)
T ss_pred             EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEE
Confidence              00000   0000  0          00       00  000000   00111222222211         23566788


Q ss_pred             EecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc---------
Q 020461          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---------  224 (326)
Q Consensus       154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~---------  224 (326)
                      |-|-++++++|...|.+.++|+.+...+.++.   +|.+.+.+++.+||+..++|||.|.+|++||..--.         
T Consensus       420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~---AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~  496 (888)
T KOG0306|consen  420 FVPGDRYIVLGTKNGELQVFDLASASLVETIR---AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV  496 (888)
T ss_pred             ecCCCceEEEeccCCceEEEEeehhhhhhhhh---ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence            89999999999999999999999887766553   799999999999999999999999999999964211         


Q ss_pred             ----eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461          225 ----LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (326)
Q Consensus       225 ----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~  300 (326)
                          ..+++..+..+-|+.+||++..++++==+..+-++            +.+.  -+-+-.+-||.=||.||.+|||+
T Consensus       497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy------------flDt--lKFflsLYGHkLPV~smDIS~DS  562 (888)
T KOG0306|consen  497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY------------FLDT--LKFFLSLYGHKLPVLSMDISPDS  562 (888)
T ss_pred             eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE------------Eecc--eeeeeeecccccceeEEeccCCc
Confidence                11233445678999999999988876333322222            2222  22233467899999999999999


Q ss_pred             ceEEeecCCCcEEEeecC
Q 020461          301 KSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       301 ~~lat~s~Dg~i~l~~~~  318 (326)
                      ++++|||+|.+|++|=+|
T Consensus       563 klivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  563 KLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             CeEEeccCCCceEEeccc
Confidence            999999999999999765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=6.9e-29  Score=204.46  Aligned_cols=257  Identities=19%  Similarity=0.301  Sum_probs=184.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC---------------------------Ceee----------
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---------------------------ERLG----------   46 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~---------------------------~~~~----------   46 (326)
                      +.+.+|...|.++++.|.|.++++||.|-+|++||....                           ..+.          
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            467888999999999999999999999999999997521                           1100          


Q ss_pred             ----------------------eccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcE-EEEEecCCCcceeeee
Q 020461           47 ----------------------TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQ-LFTFNFDSPARSVDFA  102 (326)
Q Consensus        47 ----------------------~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~  102 (326)
                                            ..+||...++|.+|+|+. +.++|++.||++|+||++..+. ..++...         
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k---------  311 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK---------  311 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec---------
Confidence                                  015788888888888865 4678888888888888765431 1111100         


Q ss_pred             cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccc
Q 020461          103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK  182 (326)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  182 (326)
                                                            ...+..-+++.++|+|+++.|+.|..||.|.+||........
T Consensus       312 --------------------------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p  353 (641)
T KOG0772|consen  312 --------------------------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP  353 (641)
T ss_pred             --------------------------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc
Confidence                                                  000122356789999999999999999999999975433322


Q ss_pred             ccccccCcce--eeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-ceEEEEe---eccceEEEEeCCCCCeeEEecCCCcc
Q 020461          183 ESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDAS  256 (326)
Q Consensus       183 ~~~~~~~h~~--~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~  256 (326)
                      .+....+|..  .|+|+.||+||++|++-+.|+++++||+++. +++....   ...+-..++|||+...++++......
T Consensus       354 ~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~  433 (641)
T KOG0772|consen  354 VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG  433 (641)
T ss_pred             ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence            2222346766  8999999999999999999999999999974 4444432   23456788999998776665432211


Q ss_pred             eeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                              ...-.+.+|+..+-+.+..+.--..-|..+.|+|--+.+..|+.||+++++
T Consensus       434 --------~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  434 --------MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             --------CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence                    111235566666555555555456678999999999999999999999985

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1e-27  Score=186.34  Aligned_cols=242  Identities=17%  Similarity=0.324  Sum_probs=190.7

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC--eEEEEeCCCcEEEEEcc
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNVE   82 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~d~~i~~wd~~   82 (326)
                      .+..|..+|++++.+  +.++||||.|-+|+|||..+...+..+-.|++.|+++.|.++-.  .|++|+.||.|.+|+..
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            456799999999865  88999999999999999999988999999999999999998754  89999999999999976


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ..+                                                    .+..+++|.+.|+.++.+|.++..+
T Consensus       116 ~W~----------------------------------------------------~~~slK~H~~~Vt~lsiHPS~KLAL  143 (362)
T KOG0294|consen  116 SWE----------------------------------------------------LLKSLKAHKGQVTDLSIHPSGKLAL  143 (362)
T ss_pred             CeE----------------------------------------------------EeeeecccccccceeEecCCCceEE
Confidence            532                                                    2334678888899999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~  242 (326)
                      +.+.|+.+++|++-.|+.-....  ..+  ..+.+.|+|.|.+++.++.+ .|-+|.+.+-.....+..+..+.++.|-.
T Consensus       144 sVg~D~~lr~WNLV~Gr~a~v~~--L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~  218 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRVAFVLN--LKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLD  218 (362)
T ss_pred             EEcCCceeeeehhhcCccceeec--cCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecC
Confidence            99999999999998876544332  122  33459999999999988876 48899888766655555444444554443


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE--CCCCceEEeecCCCcEEEeecCCC
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                       ++.+++ |+++.             .+.+||.....+...+.+|..+|.++.+  +|++.+|+|+|.||.|++|+++.+
T Consensus       219 -~~~L~v-G~d~~-------------~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  219 -GSELLV-GGDNE-------------WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             -CceEEE-ecCCc-------------eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence             233444 44332             2445555555566678899999999995  688999999999999999999987

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=4.4e-29  Score=200.02  Aligned_cols=237  Identities=20%  Similarity=0.310  Sum_probs=191.6

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +++..|+.+|.++.|++++.+++||+.+|.|++|+.+ ...++.+.+|. .+|.+++|+|+...|++||.|++|+|||..
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence            3577899999999999999999999999999999853 45566677765 899999999998999999999999999998


Q ss_pred             CCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ..+.-..+. +.-.+.+++|++...+++.++..     ..+++|+.      .++.++..+-+|.+.|..+.|+|++++|
T Consensus       211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskD-----nlVKlWDp------rSg~cl~tlh~HKntVl~~~f~~n~N~L  279 (464)
T KOG0284|consen  211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD-----NLVKLWDP------RSGSCLATLHGHKNTVLAVKFNPNGNWL  279 (464)
T ss_pred             CCchhheeccCCCCcceeccCCccceeEEccCC-----ceeEeecC------CCcchhhhhhhccceEEEEEEcCCCCee
Confidence            776544443 34567889999877776665432     23444443      4567888889999999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEE
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAV  238 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~  238 (326)
                      +++|.|..++++|+++.+.+..   ..+|...++++.|+|- ...|.+|+.||.|..|.+...+++..+.  +...|.++
T Consensus       280 lt~skD~~~kv~DiR~mkEl~~---~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl  356 (464)
T KOG0284|consen  280 LTGSKDQSCKVFDIRTMKELFT---YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSL  356 (464)
T ss_pred             EEccCCceEEEEehhHhHHHHH---hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeee
Confidence            9999999999999986554444   3589999999999994 5678899999999999988666655543  55689999


Q ss_pred             EeCCCCCeeEEecCCCcc
Q 020461          239 TMSPLLDHVVLGGGQDAS  256 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~  256 (326)
                      +++|-|-.++. |+.|..
T Consensus       357 ~~hPlGhil~t-gsnd~t  373 (464)
T KOG0284|consen  357 AYHPLGHILAT-GSNDRT  373 (464)
T ss_pred             eccccceeEee-cCCCcc
Confidence            99998866555 555554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.9e-28  Score=188.65  Aligned_cols=287  Identities=24%  Similarity=0.395  Sum_probs=207.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc--
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV--   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~--   81 (326)
                      +.+.||++.|..++-...-+++.++|.|++.+||.+++|.|+.++.||.+.|+++.|++.+.++++++.|++..+|..  
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av  221 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV  221 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence            457899999999988877789999999999999999999999999999999999999999999999999999999962  


Q ss_pred             --cCCcE------------------------------------EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceee
Q 020461           82 --ETGAQ------------------------------------LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (326)
Q Consensus        82 --~~~~~------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (326)
                        ...+.                                    +..+. +...+.+++|..+....+...          
T Consensus       222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS----------  291 (481)
T KOG0300|consen  222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS----------  291 (481)
T ss_pred             cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee----------
Confidence              11100                                    00000 001111122221111111100          


Q ss_pred             eeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC
Q 020461          123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD  202 (326)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~  202 (326)
                       ..+.+.-+....++.+..+.||...++.+.-+|..+++++.+.|.+.++||.+  +.+..+....||...|+++.|..+
T Consensus       292 -WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~d  368 (481)
T KOG0300|consen  292 -WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTD  368 (481)
T ss_pred             -ccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecC
Confidence             00111112335678888999999999999999999999999999999999997  345555666799999999999876


Q ss_pred             CCeEEEEeCCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce---
Q 020461          203 GSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ---  278 (326)
Q Consensus       203 ~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---  278 (326)
                      . .+++|+.|.+|++||+++. .++.++....+++-++.+..+..+++-  -        |+|    .+++|+.+..   
T Consensus       369 d-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiP--h--------DNR----qvRlfDlnG~Rla  433 (481)
T KOG0300|consen  369 D-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIP--H--------DNR----QVRLFDLNGNRLA  433 (481)
T ss_pred             C-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEec--c--------CCc----eEEEEecCCCccc
Confidence            4 6999999999999999874 456667777788888877655444332  1        222    2444543321   


Q ss_pred             -eeeccccccCcceeEEEECCCC--ceEEeecCCCcEEEeecC
Q 020461          279 -EEIGGVKGHFGPINALAFNPDG--KSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       279 -~~~~~~~~h~~~v~~v~~s~d~--~~lat~s~Dg~i~l~~~~  318 (326)
                       .+-..-++|...|.|++|.-+-  .-|.+|+.|..+-=|++.
T Consensus       434 RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  434 RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             cCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence             1122346899999999997543  348899999999888764

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=8.5e-27  Score=204.83  Aligned_cols=230  Identities=17%  Similarity=0.283  Sum_probs=162.9

Q ss_pred             eeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCC--------eeeeccCcccceEEEEEcCCCCe-EEEEeCC
Q 020461            4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE--------RLGTYRGHNGAVWCCDVSRDSMT-LITGSAD   73 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~--------~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d   73 (326)
                      ..+.+|.++|.+++|+|+ +++|++|+.|++|+||++.++.        .+..+.+|...|.+++|+|++.. |++++.|
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence            467899999999999997 7899999999999999997642        23467899999999999998875 5799999


Q ss_pred             CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      ++|++||+.+++....+                                                    . +...|.++.
T Consensus       148 gtIrIWDl~tg~~~~~i----------------------------------------------------~-~~~~V~Sls  174 (568)
T PTZ00420        148 SFVNIWDIENEKRAFQI----------------------------------------------------N-MPKKLSSLK  174 (568)
T ss_pred             CeEEEEECCCCcEEEEE----------------------------------------------------e-cCCcEEEEE
Confidence            99999999876543211                                                    0 223578899


Q ss_pred             EecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEE-----EEEcCCCCeEEEEeCCC----eEEEeecCC-c
Q 020461          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS-----LAKAADGSHFLTGSLDK----SAKLWDART-L  223 (326)
Q Consensus       154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~-----v~~s~~~~~l~s~s~dg----~i~iwd~~~-~  223 (326)
                      |+|+|..|++++.|+.|++||+++++.+.++   .+|.+.+.+     ..+++++.+++|++.|+    +|++||+++ .
T Consensus       175 wspdG~lLat~s~D~~IrIwD~Rsg~~i~tl---~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~  251 (568)
T PTZ00420        175 WNIKGNLLSGTCVGKHMHIIDPRKQEIASSF---HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT  251 (568)
T ss_pred             ECCCCCEEEEEecCCEEEEEECCCCcEEEEE---ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence            9999999999999999999999998876554   356654322     34568999999988775    799999995 5


Q ss_pred             ceEEEEeeccceEE--EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461          224 ELIKTYVTERPVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK  301 (326)
Q Consensus       224 ~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~  301 (326)
                      +++..+........  ..+.++...++++|..|.. +..++...+.          ...+..+. +..++..++|.|...
T Consensus       252 ~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~----------~~~l~~~~-s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        252 SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS----------IRKVNEYK-SCSPFRSFGFLPKQI  319 (568)
T ss_pred             CceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc----------EEeecccc-cCCCccceEEccccc
Confidence            66665543332222  2233443444544443432 2233322211          11122222 567888999999654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.3e-27  Score=212.81  Aligned_cols=256  Identities=23%  Similarity=0.400  Sum_probs=197.6

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-------C-----------CeeeeccCcccceEEEEEcCCCCe
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------G-----------ERLGTYRGHNGAVWCCDVSRDSMT   66 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-------~-----------~~~~~~~~h~~~V~~~~~~~~~~~   66 (326)
                      .+..|.+.|.|+.|+|||++||+||.|+.|.||+.+.       +           +.+..+++|...|..+.|+|++.+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence            4667999999999999999999999999999998772       1           245678999999999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc
Q 020461           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (326)
Q Consensus        67 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (326)
                      |+++|.|++|.+||..+.+                                                    .+..+++|+
T Consensus       144 lvS~s~DnsViiwn~~tF~----------------------------------------------------~~~vl~~H~  171 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFE----------------------------------------------------LLKVLRGHQ  171 (942)
T ss_pred             EEEecccceEEEEccccce----------------------------------------------------eeeeeeccc
Confidence            9999999999999987643                                                    234567899


Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccccc---CcceeeEEEEEcCCCCeEEEEeC----CCeEEEee
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET---GHKKTITSLAKAADGSHFLTGSL----DKSAKLWD  219 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---~h~~~v~~v~~s~~~~~l~s~s~----dg~i~iwd  219 (326)
                      +.|.-+.|+|.|++|++-++|++|++|.+.+....+.+....   +-..-..-+.|||||.+|++.-.    -.++.|.+
T Consensus       172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie  251 (942)
T KOG0973|consen  172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE  251 (942)
T ss_pred             ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence            999999999999999999999999999976654444433221   22344677899999999998653    34688888


Q ss_pred             cCCcceEEEEe-eccceEEEEeCCCC---------------C-eeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461          220 ARTLELIKTYV-TERPVNAVTMSPLL---------------D-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG  282 (326)
Q Consensus       220 ~~~~~~~~~~~-~~~~~~~~~~s~~~---------------~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  282 (326)
                      ..+-+.-..+. |..++.++.|+|..               . .+++.|+.|..             +.+|......++-
T Consensus       252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-------------lSVW~T~~~RPl~  318 (942)
T KOG0973|consen  252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-------------LSVWNTALPRPLF  318 (942)
T ss_pred             cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc-------------EEEEecCCCCchh
Confidence            87777666654 55688889887531               1 14445555543             3455555444432


Q ss_pred             cccc-cCcceeEEEECCCCceEEeecCCCcEEEeecCCCceeee
Q 020461          283 GVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK  325 (326)
Q Consensus       283 ~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~~~  325 (326)
                      ..+. -...|.+++|+|||..|..||.||+|.+++|+++.|-..
T Consensus       319 vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~  362 (942)
T KOG0973|consen  319 VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVA  362 (942)
T ss_pred             hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence            2211 134699999999999999999999999999999887543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=4.2e-28  Score=194.70  Aligned_cols=242  Identities=25%  Similarity=0.324  Sum_probs=188.5

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .+|.|-.++|+.+.|.++++++++++.|+.+++|++.......++.+|++.|+++.|......+++|+.|.+||+||+..
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k  292 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK  292 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence            35667778899999999999999999999999999999999999999999999999987666699999999999999987


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ..+....-+.+                                                     .++.++.+  ...+++
T Consensus       293 ~~C~kt~l~~S-----------------------------------------------------~cnDI~~~--~~~~~S  317 (459)
T KOG0288|consen  293 AYCSKTVLPGS-----------------------------------------------------QCNDIVCS--ISDVIS  317 (459)
T ss_pred             hheeccccccc-----------------------------------------------------cccceEec--ceeeee
Confidence            66543321110                                                     11111221  234788


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-----cceEEE
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----RPVNAV  238 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~  238 (326)
                      |-.|+.|++||+++..+...+.   . .+.|+++..+++|..+.+++.|.++.+.|+++.+..+.+..+     ...+.+
T Consensus       318 gH~DkkvRfwD~Rs~~~~~sv~---~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv  393 (459)
T KOG0288|consen  318 GHFDKKVRFWDIRSADKTRSVP---L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV  393 (459)
T ss_pred             cccccceEEEeccCCceeeEee---c-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence            9999999999999888776653   2 358999999999999999999999999999999998887643     457889


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      .|||+++.+++++.++..  ..|+...++++..          ....+-...|++++|+|.|.+|++++.++.+++|.
T Consensus       394 vfSpd~~YvaAGS~dgsv--~iW~v~tgKlE~~----------l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSADGSV--YIWSVFTGKLEKV----------LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EECCCCceeeeccCCCcE--EEEEccCceEEEE----------eccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            999999888877655532  2333333332211          11112223699999999999999999999999994

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.9e-27  Score=178.70  Aligned_cols=240  Identities=17%  Similarity=0.262  Sum_probs=185.0

Q ss_pred             eEEEEccC--CCEEEeec------CCCCeEEEecCCCCeeeeccC--cccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461           14 TYLKYNKD--GDLLFSCA------KDHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (326)
Q Consensus        14 ~~~~~s~~--~~~l~s~~------~d~~v~iw~~~~~~~~~~~~~--h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~   82 (326)
                      +++.|||-  +++.++++      .+|++.|-++.++..+.++..  -...+..++|+++. +.+++++.||++|+||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            67899983  33333322      468888988876666655543  35679999999864 578999999999999953


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTI  161 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l  161 (326)
                      ..                                                   ..++..++.|...|.++.|++.. +.+
T Consensus        92 ~~---------------------------------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~  120 (311)
T KOG0277|consen   92 MP---------------------------------------------------SKPIHKFKEHKREVYSVDWNTVRRRIF  120 (311)
T ss_pred             CC---------------------------------------------------CcchhHHHhhhhheEEeccccccceeE
Confidence            21                                                   12445567888999999999865 577


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEE
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~  239 (326)
                      ++++.|++||+||.+.++.+.++   .+|...|...+|+|. ++.++++|.|+++++||++.......+. +...+.++.
T Consensus       121 ltsSWD~TiKLW~~~r~~Sv~Tf---~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd  197 (311)
T KOG0277|consen  121 LTSSWDGTIKLWDPNRPNSVQTF---NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD  197 (311)
T ss_pred             EeeccCCceEeecCCCCcceEee---cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence            88899999999999888777765   489999999999984 7789999999999999998754434444 345788899


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-ceEEeecCCCcEEEeecC
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-~~lat~s~Dg~i~l~~~~  318 (326)
                      |+.....++++|+.|.. +..+|.|..           ..++-++.+|.-.|..|+|||.. ..||++|.|-++|||++.
T Consensus       198 w~ky~~~vl~Tg~vd~~-vr~wDir~~-----------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  198 WSKYNHNVLATGGVDNL-VRGWDIRNL-----------RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             ccccCCcEEEecCCCce-EEEEehhhc-----------cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence            99988888888887764 344554432           23455678999999999999965 579999999999999988


Q ss_pred             C
Q 020461          319 P  319 (326)
Q Consensus       319 ~  319 (326)
                      .
T Consensus       266 ~  266 (311)
T KOG0277|consen  266 R  266 (311)
T ss_pred             c
Confidence            4

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.2e-27  Score=183.75  Aligned_cols=279  Identities=16%  Similarity=0.211  Sum_probs=206.3

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      ..|+.|++-|.+||+|..||.|.|||..+...-+.+.+|..+|.+++||+||+.|+|+|.|..|++||+..|.++..+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            57999999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeeeecCC--eEEEEEcC--cccee-ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           93 DSPARSVDFAVGD--KLAVITTD--PFMEL-NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        93 ~~~~~~~~~~~~~--~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      ++|+..+.++|..  +.+++.-+  +.+.. ....+. .+..+...          ..+..-.+..|++.|+++++|...
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~----------dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDG----------DLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcc----------ccccccccccccCCCCEEEEecCc
Confidence            9999999998743  33322211  11110 000000 00000000          001111223588999999999999


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC-------cceE--EEE---eeccce
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-------LELI--KTY---VTERPV  235 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-------~~~~--~~~---~~~~~~  235 (326)
                      |.+.++|..+-+++..+....  -..|..+.++..|.+|+..+.|..||.|+++.       ++..  +++   ....+-
T Consensus       175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            999999999888776554332  25688899999999999999999999999762       1111  111   112345


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC-cceeEEEECCCCceEEeecCCCcEEE
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      ++++|+.+|..++.+. ...            ..+++|....+..+.-+.|.. .....+.|+|-...+++- +.|.+++
T Consensus       253 k~ccfs~dgeYv~a~s-~~a------------HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~i  318 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGS-ARA------------HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYI  318 (405)
T ss_pred             hheeecCCccEEEecc-ccc------------eeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEE
Confidence            6888998887766543 222            346677777777777777766 567889999999888877 7899999


Q ss_pred             eecC
Q 020461          315 HHFD  318 (326)
Q Consensus       315 ~~~~  318 (326)
                      |...
T Consensus       319 w~~~  322 (405)
T KOG1273|consen  319 WAVV  322 (405)
T ss_pred             EEee
Confidence            9753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.5e-27  Score=182.41  Aligned_cols=248  Identities=19%  Similarity=0.301  Sum_probs=177.2

Q ss_pred             ecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCC-CCee-eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         8 ~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~-~~~~-~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      ..++.|.+++||| ...+++++|.|++||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3567899999999 456777999999999999987 3443 345679999999999999999999999999999999998


Q ss_pred             cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC--cEEE
Q 020461           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTII  162 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~  162 (326)
                      +....-.++.++..+                                                     .|-+..  ..|+
T Consensus       105 Q~~~v~~Hd~pvkt~-----------------------------------------------------~wv~~~~~~cl~  131 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTC-----------------------------------------------------HWVPGMNYQCLV  131 (347)
T ss_pred             CeeeeeecccceeEE-----------------------------------------------------EEecCCCcceeE
Confidence            765544444444443                                                     333222  3689


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-e--eccceEEEE
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-V--TERPVNAVT  239 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~--~~~~~~~~~  239 (326)
                      ||+.|.+||.||.++...+.++..    .+.+.+++.  -...++.+..+..|.+++++++...... .  ..-.+++++
T Consensus       132 TGSWDKTlKfWD~R~~~pv~t~~L----PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va  205 (347)
T KOG0647|consen  132 TGSWDKTLKFWDTRSSNPVATLQL----PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA  205 (347)
T ss_pred             ecccccceeecccCCCCeeeeeec----cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE
Confidence            999999999999998877765532    234444443  3457889999999999999875433322 1  234688999


Q ss_pred             eCCCCCeeEEecCCCcceeEeeccc--CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      ..++.+..++++-++...+-..|.+  ...+..+    .+... ....+.--.|++|+|+|.-..|+|++.||+..+|+=
T Consensus       206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk----CHR~~-~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK----CHRST-NSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             EEecCCceEeeeecceEEEEecCCCCccCceeEE----EeccC-CCCCCceEEecceEeecccceEEEecCCceEEEecc
Confidence            9888888888877777666655543  1111111    00000 001111126899999999999999999999999986


Q ss_pred             CC
Q 020461          318 DP  319 (326)
Q Consensus       318 ~~  319 (326)
                      |.
T Consensus       281 da  282 (347)
T KOG0647|consen  281 DA  282 (347)
T ss_pred             hh
Confidence            53

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=5.3e-26  Score=188.27  Aligned_cols=247  Identities=32%  Similarity=0.523  Sum_probs=191.5

Q ss_pred             eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeee
Q 020461           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (326)
Q Consensus        45 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (326)
                      +.++++|.++|.+++|+|+++++++++.|+.+++|++.+++....+.. ..++..+.+.+.+..++++..     +..+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~   76 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-----DKTIR   76 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-----CCeEE
Confidence            346789999999999999999999999999999999998876555543 344446777776644443332     22334


Q ss_pred             eeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (326)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  203 (326)
                      ++.+..      +.....+..|...+.++.|+|++.++++++.|+.|++||+++++....+.   .|...+.+++++|++
T Consensus        77 i~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~  147 (289)
T cd00200          77 LWDLET------GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSPDG  147 (289)
T ss_pred             EEEcCc------ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcCcC
Confidence            444322      23555667888899999999998888888889999999998776655443   678889999999999


Q ss_pred             CeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461          204 SHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG  282 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  282 (326)
                      .++++++.|+.|++||+++++.+..+... ..+.++.++|+++.+++++.++              .+.+|+....+.+.
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~--------------~i~i~d~~~~~~~~  213 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG--------------TIKLWDLSTGKCLG  213 (289)
T ss_pred             CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC--------------cEEEEECCCCceec
Confidence            88888888999999999988887777643 4799999999998887776532              23344444444555


Q ss_pred             cccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      .+..|...+.+++|+|++.++++++.||.|++|+++.
T Consensus       214 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            5667888999999999999999999999999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.3e-25  Score=165.23  Aligned_cols=289  Identities=19%  Similarity=0.241  Sum_probs=205.3

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCC------C---------CeeeeccCcccceEEEEEcCCCCeEEEEeCCC
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------G---------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ   74 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~------~---------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~   74 (326)
                      ...|.+++|+|.|.+.+.||+..+.||-....      +         .+.+..+.|.+.|.|.+|+|+|+++++|+.|+
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            35688999999999999999999999863221      1         11233467999999999999999999999999


Q ss_pred             cEEEEEccCCcE------EEEEecCCCcceeeeecC----CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           75 TAKLWNVETGAQ------LFTFNFDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        75 ~i~~wd~~~~~~------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      +|++.-++...+      +.--.+++.++.+.|..+    ..+.+..+..-..    +..      ...+.+.....+.|
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~----iy~------tdc~~g~~~~a~sg  181 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK----IYI------TDCGRGQGFHALSG  181 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce----EEE------eecCCCCcceeecC
Confidence            999987654332      111234566666666532    2333332221111    111      12245667778899


Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccccc---C-cceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET---G-HKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---~-h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      |.+-|..+ ++=++.+|++|+.|.+|++||++-..++..+....   + .+..|.+++..|.|.+|++|-.|....+||+
T Consensus       182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence            99888765 34457799999999999999998777766543211   1 2356999999999999999999999999999


Q ss_pred             CCcceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          221 RTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       221 ~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      +.+.+++.+.+ ...+.++-|+|..-.++.+. .|.. +..+|..        -+...+.+.-....|...+-.+.|+|.
T Consensus       261 rg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~-ikltdlq--------gdla~el~~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMK-IKLTDLQ--------GDLAHELPIMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             eCCceeeeeCCCccceeEEEeCCCceEEEEec-ccce-EEEeecc--------cchhhcCceEEEEeccCceEEEEecCc
Confidence            99999999864 56799999999766555543 3321 1112211        011222233345678899999999999


Q ss_pred             CceEEeecCCCcEEEeecCC
Q 020461          300 GKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       300 ~~~lat~s~Dg~i~l~~~~~  319 (326)
                      .-.|++.|.|.++.||-+.+
T Consensus       331 d~sfisssadkt~tlwa~~~  350 (350)
T KOG0641|consen  331 DFSFISSSADKTATLWALNG  350 (350)
T ss_pred             cceeeeccCcceEEEeccCC
Confidence            99999999999999998753

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.8e-28  Score=194.95  Aligned_cols=251  Identities=20%  Similarity=0.341  Sum_probs=199.9

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .+..|+..+..+-|-++...|++|+.|..|++|+....+  .+.++.+-.++|..++|.++++++++++.|+.+++|++.
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence            466799999999999999999999999999999986654  678888989999999999999999999999999999987


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ..+.                                                    ..++.||...|+++.|......++
T Consensus       250 ~~r~----------------------------------------------------~~TLsGHtdkVt~ak~~~~~~~vV  277 (459)
T KOG0288|consen  250 SLRL----------------------------------------------------RHTLSGHTDKVTAAKFKLSHSRVV  277 (459)
T ss_pred             chhh----------------------------------------------------hhhhcccccceeeehhhcccccee
Confidence            6433                                                    223567778888888776655699


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~  242 (326)
                      +|+.|.+|++||+..+.+.+++...    ..+..+..+  ...+++|=.|++|++||.++..++...+....+.++..++
T Consensus       278 sgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~  351 (459)
T KOG0288|consen  278 SGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM  351 (459)
T ss_pred             eccccchhhhhhhhhhheecccccc----ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeecc
Confidence            9999999999999988887765432    334445444  4568899999999999999999999999888999999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      ++..+++++.+|.  +...|.|......-+ .   ..  +...+  ...+.+.||||+.|+|+||.||.|.||++...-+
T Consensus       352 ~g~~lLsssRDdt--l~viDlRt~eI~~~~-s---A~--g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl  421 (459)
T KOG0288|consen  352 DGLELLSSSRDDT--LKVIDLRTKEIRQTF-S---AE--GFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL  421 (459)
T ss_pred             CCeEEeeecCCCc--eeeeecccccEEEEe-e---cc--ccccc--cccceeEECCCCceeeeccCCCcEEEEEccCceE
Confidence            9999998866664  334555543321111 0   00  11112  3489999999999999999999999999876654


Q ss_pred             e
Q 020461          323 N  323 (326)
Q Consensus       323 ~  323 (326)
                      .
T Consensus       422 E  422 (459)
T KOG0288|consen  422 E  422 (459)
T ss_pred             E
Confidence            3

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.2e-26  Score=188.87  Aligned_cols=257  Identities=21%  Similarity=0.311  Sum_probs=192.4

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee----e------------c--cCcccceEEEEEcCCC
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG----T------------Y--RGHNGAVWCCDVSRDS   64 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~----~------------~--~~h~~~V~~~~~~~~~   64 (326)
                      .++...|.-++.+++++|++++.++++.|++|.-|++.++....    .            .  ++|...+.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            36778899999999999999999999999999999988776331    1            1  2788899999999999


Q ss_pred             CeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        65 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      ++|++|+.|..|.||+.++.+.+.                                                    .+++
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~----------------------------------------------------~~~g  242 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVK----------------------------------------------------VFKG  242 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhh----------------------------------------------------cccc
Confidence            999999999999999998765432                                                    2457


Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      |.+.|.+++|-.....+++++.|++|++|++.....+.+   ..+|+..|.++....-...+-+|+.|.++++|++-  +
T Consensus       243 hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet---lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~--e  317 (479)
T KOG0299|consen  243 HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET---LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP--E  317 (479)
T ss_pred             cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH---HhCCccceeeechhcccceEEeccccceeEEEecc--c
Confidence            777888888877777899999999999999987655544   35899999999988887777777799999999993  3


Q ss_pred             eEEEE--eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec---cccccCcceeEEEECCC
Q 020461          225 LIKTY--VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG---GVKGHFGPINALAFNPD  299 (326)
Q Consensus       225 ~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~v~~s~d  299 (326)
                      ..+.+  .+...+.|++|-.+ .++++++.++.  ++.|+....+.   ++.......+.   ....+..+|++++..|.
T Consensus       318 esqlifrg~~~sidcv~~In~-~HfvsGSdnG~--IaLWs~~KKkp---lf~~~~AHgv~~~~~~~~~~~Witsla~i~~  391 (479)
T KOG0299|consen  318 ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS--IALWSLLKKKP---LFTSRLAHGVIPELDPVNGNFWITSLAVIPG  391 (479)
T ss_pred             cceeeeeCCCCCeeeEEEecc-cceeeccCCce--EEEeeecccCc---eeEeeccccccCCccccccccceeeeEeccc
Confidence            33332  23457889998654 55666544443  33333222111   11111111111   11233459999999999


Q ss_pred             CceEEeecCCCcEEEeecCCCce
Q 020461          300 GKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       300 ~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      ..++|+||.+|.||||...+++=
T Consensus       392 sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  392 SDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             CceEEecCCCCceEEEEecCCcc
Confidence            99999999999999999998853

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.2e-27  Score=174.82  Aligned_cols=241  Identities=22%  Similarity=0.337  Sum_probs=180.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .+..||...|..++.+.|...+++|+.|..+.+||+++|+.++.|++|.++|+.+.|+.+...+++||.|.++|+||.+.
T Consensus        53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen   53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ...       .|+..+                                           ..-...|.++...  +..|+.
T Consensus       133 ~s~-------ePiQil-------------------------------------------dea~D~V~Si~v~--~heIva  160 (307)
T KOG0316|consen  133 RSF-------EPIQIL-------------------------------------------DEAKDGVSSIDVA--EHEIVA  160 (307)
T ss_pred             CCC-------Cccchh-------------------------------------------hhhcCceeEEEec--ccEEEe
Confidence            321       111100                                           0001112222221  346899


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc---eEEEEe
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP---VNAVTM  240 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~  240 (326)
                      |+.||+++.||++.|+......     ..+|+++.+++|++..+.++.|+++++-|-.+++++..+.....   -...++
T Consensus       161 GS~DGtvRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             eccCCcEEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence            9999999999999998776542     46899999999999999999999999999999999988764322   122344


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc-eeEEEECCCCceEEeecCCCcEEEee
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      +....++ +++++|+             .+.+|+......+..+.-|... |.+++++|.-.-|.++. ++.+.+|.
T Consensus       236 ~qsdthV-~sgSEDG-------------~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~  297 (307)
T KOG0316|consen  236 NQSDTHV-FSGSEDG-------------KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY  297 (307)
T ss_pred             cccceeE-EeccCCc-------------eEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence            4444444 4455554             2345665555445555556555 79999999887777665 44455554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.5e-27  Score=176.75  Aligned_cols=255  Identities=19%  Similarity=0.285  Sum_probs=189.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC---CeeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKL   78 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~---~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~   78 (326)
                      ++...|++-|..+..+-.|++||+|++|++|+|+...+.   ..+.++.||.++|+.++|..  -|.+|++++.||+|.+
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence            566789999999999999999999999999999988654   46789999999999999965  6899999999999999


Q ss_pred             EEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        79 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      |.-++++=.                                                  .......|.+.|++++|-|.+
T Consensus        85 Wke~~g~w~--------------------------------------------------k~~e~~~h~~SVNsV~waphe  114 (299)
T KOG1332|consen   85 WKEENGRWT--------------------------------------------------KAYEHAAHSASVNSVAWAPHE  114 (299)
T ss_pred             EecCCCchh--------------------------------------------------hhhhhhhhcccceeecccccc
Confidence            987655210                                                  111234678889999998865


Q ss_pred             --cEEEEeeCCCcEEEEECCCC-ccccccccccCcceeeEEEEEcCC---C-----------CeEEEEeCCCeEEEeecC
Q 020461          159 --RTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAAD---G-----------SHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       159 --~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~---~-----------~~l~s~s~dg~i~iwd~~  221 (326)
                        -.|++++.||.|.+.+.+.. ..... .....|.-.|++++|.|.   |           ..|++|+.|..|+||+..
T Consensus       115 ygl~LacasSDG~vsvl~~~~~g~w~t~-ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  115 YGLLLACASSDGKVSVLTYDSSGGWTTS-KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             cceEEEEeeCCCcEEEEEEcCCCCccch-hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence              47889999999999998654 22222 233579999999999886   4           569999999999999988


Q ss_pred             Ccce--EEEEe-eccceEEEEeCCCCC---eeEEecCCCccee-EeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461          222 TLEL--IKTYV-TERPVNAVTMSPLLD---HVVLGGGQDASAV-TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (326)
Q Consensus       222 ~~~~--~~~~~-~~~~~~~~~~s~~~~---~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  294 (326)
                      +.+-  .+.+. +..-++.+++.|...   ..+++.++|+..+ ...+.....     |.      ...+......++.+
T Consensus       194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~-----wk------~tll~~f~~~~w~v  262 (299)
T KOG1332|consen  194 SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP-----WK------KTLLEEFPDVVWRV  262 (299)
T ss_pred             CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc-----cc------ccccccCCcceEEE
Confidence            7522  22222 345688899998753   3455556665433 222211111     11      11222344679999


Q ss_pred             EECCCCceEEeecCCCcEEEeecCCC
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .||+.|..||.++.|+.|.+|.=.-+
T Consensus       263 SWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  263 SWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             EEeccccEEEEecCCcEEEEEEeCCC
Confidence            99999999999999999999975443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=1.5e-25  Score=210.19  Aligned_cols=235  Identities=17%  Similarity=0.243  Sum_probs=180.4

Q ss_pred             ecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCc
Q 020461            8 GHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         8 ~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      .+...+.+++|++. +++|++++.|++|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.
T Consensus       530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            34567899999874 78999999999999999999999999999999999999997 78899999999999999999988


Q ss_pred             EEEEEecCCCcceeeeec-CCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           86 QLFTFNFDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      .+..+.....+.++.+.+ ... ++..+.+      ..+.+|++...     ......+.+|...|.++.|. ++..|++
T Consensus       610 ~~~~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~lvs  677 (793)
T PLN00181        610 SIGTIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSSTLVS  677 (793)
T ss_pred             EEEEEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCEEEE
Confidence            877776655666677753 233 3333333      34455554321     12345667899999999997 6789999


Q ss_pred             eeCCCcEEEEECCCCcc---ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe----------
Q 020461          164 AGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----------  230 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~---~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------  230 (326)
                      ++.|++|++||++.+..   ...+....+|...+.++++++++.+|++|+.|++|++|+......+..+.          
T Consensus       678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~  757 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL  757 (793)
T ss_pred             EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence            99999999999975321   11122335788899999999999999999999999999987654433221          


Q ss_pred             ----eccceEEEEeCCCCCeeEEecCCC
Q 020461          231 ----TERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       231 ----~~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                          ....+.+++|+|++..+++++.++
T Consensus       758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG  785 (793)
T PLN00181        758 EVDDASQFISSVCWRGQSSTLVAANSTG  785 (793)
T ss_pred             ccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence                123589999999998877765543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=4.1e-26  Score=177.03  Aligned_cols=250  Identities=18%  Similarity=0.268  Sum_probs=183.0

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      ..++.|..+.|+|.++.|+.++.||++++|+....+....+ .|.+++.+++|.++ ..+++|+.||.|+++|+++++..
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce
Confidence            34678999999999999999999999999999877655555 47899999999874 46889999999999999887543


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      ..                                                     -.|..+|.++.+.+....+++||+|
T Consensus        89 ~i-----------------------------------------------------gth~~~i~ci~~~~~~~~vIsgsWD  115 (323)
T KOG1036|consen   89 QI-----------------------------------------------------GTHDEGIRCIEYSYEVGCVISGSWD  115 (323)
T ss_pred             ee-----------------------------------------------------ccCCCceEEEEeeccCCeEEEcccC
Confidence            22                                                     1355667777777777789999999


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe---eccceEEEEeCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLL  244 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~s~~~  244 (326)
                      ++|++||.+.......+.    ....|.++...  +..|+.|+.|..+.+||+++.+...+..   ...+++++++-|.+
T Consensus       116 ~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~  189 (323)
T KOG1036|consen  116 KTIKFWDPRNKVVVGTFD----QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG  189 (323)
T ss_pred             ccEEEEeccccccccccc----cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence            999999998644443332    23466666654  5689999999999999999876544332   23578899999988


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ...+++.-++..++..+|.+......++.-..+.+.-.. ..---+|++|+|+|--+.||||+.||.|.+|+..+
T Consensus       190 eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~-~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  190 EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD-TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC-ceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence            777877766666666666552111111111111110000 00113899999999999999999999999998754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=181.61  Aligned_cols=239  Identities=19%  Similarity=0.240  Sum_probs=167.1

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee-------------------------------------
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------------------------------   45 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-------------------------------------   45 (326)
                      +-.+.+|++.|+++.||.||.+||||..+|.|+||...++...                                     
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip  178 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP  178 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence            4578899999999999999999999999999999988765332                                     


Q ss_pred             -----eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC--CCcceeeeecCCeEEE-EEcCcc-c
Q 020461           46 -----GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAV-ITTDPF-M  116 (326)
Q Consensus        46 -----~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~-~  116 (326)
                           +.+.||+.++++-.|.|+|++++++..||+|++||+.++.+.+.+...  .+..++.+......+. +..+.. .
T Consensus       179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence                 224689999999999999999999999999999999999988877521  1122222221111111 111100 0


Q ss_pred             eece-eeeeeeeccCCCCCCCceEEEeccCccc---eeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcce
Q 020461          117 ELNS-AIHVKRIARDPADQGGESVLILKGPQGR---INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK  192 (326)
Q Consensus       117 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~  192 (326)
                      ..+. ..++....+.    +.  ......+...   |-.+.++..-+..++|+-||+|.|||+.+.+....    ..|+.
T Consensus       259 ~~~~~sgKVv~~~n~----~~--~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~----c~he~  328 (399)
T KOG0296|consen  259 GVNNGSGKVVNCNNG----TV--PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI----CEHED  328 (399)
T ss_pred             EEccccceEEEecCC----CC--ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee----ccCCC
Confidence            0000 0011100000    00  0001122223   34444555567889999999999999987655433    35888


Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecC
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      .|+.+.|.+ ..+|++++.||.|+.||.|+|+++..+. +...|.+.+++|+.+.+++++.
T Consensus       329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~  388 (399)
T KOG0296|consen  329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD  388 (399)
T ss_pred             ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence            899999999 6799999999999999999999999986 4568999999999887776654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.5e-26  Score=186.70  Aligned_cols=267  Identities=22%  Similarity=0.316  Sum_probs=194.5

Q ss_pred             eecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCCe----------eeeccCcccceEEEEEcCCCC-eEEEEeCCC
Q 020461            7 KGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGER----------LGTYRGHNGAVWCCDVSRDSM-TLITGSADQ   74 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~----------~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~   74 (326)
                      --|.+.|+.+.+-|+. +++++.+..+.|.|||..+..-          -..+.+|++.=.+++|++... .|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3488899999999975 5788889999999999754321          126789998777899988644 799999999


Q ss_pred             cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      +|.+||++.....      .                                       ....+...+.+|...|..++|
T Consensus       201 ~i~lwdi~~~~~~------~---------------------------------------~~~~p~~~~~~h~~~VeDV~~  235 (422)
T KOG0264|consen  201 TICLWDINAESKE------D---------------------------------------KVVDPKTIFSGHEDVVEDVAW  235 (422)
T ss_pred             cEEEEeccccccC------C---------------------------------------ccccceEEeecCCcceehhhc
Confidence            9999999753210      0                                       011245567899999999999


Q ss_pred             ecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCc-ceEEEEe-
Q 020461          155 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL-ELIKTYV-  230 (326)
Q Consensus       155 ~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-  230 (326)
                      ++.. ..|++++.|+.+.|||++++ .........+|.+.+.|++|+| ++..|||||.|++|++||+|+. +++.++. 
T Consensus       236 h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~  314 (422)
T KOG0264|consen  236 HPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG  314 (422)
T ss_pred             cccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence            9976 47789999999999999963 2222223458999999999998 4567889999999999999974 4455554 


Q ss_pred             eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecc---cceeeeccccccCcceeEEEECCCCce-EEee
Q 020461          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK---ILQEEIGGVKGHFGPINALAFNPDGKS-FSSG  306 (326)
Q Consensus       231 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s~d~~~-lat~  306 (326)
                      +...+..+.|+|..+.++++++.|... -+||...-.- .+-++.   ...+.+=.-.||.+.|..+.|+|.... ++|.
T Consensus       315 H~dev~~V~WSPh~etvLASSg~D~rl-~vWDls~ig~-eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv  392 (422)
T KOG0264|consen  315 HEDEVFQVEWSPHNETVLASSGTDRRL-NVWDLSRIGE-EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV  392 (422)
T ss_pred             CCcceEEEEeCCCCCceeEecccCCcE-EEEecccccc-ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence            456799999999999998888777642 2333211000 000000   011111123589999999999998875 7999


Q ss_pred             cCCCcEEEeecCCCc
Q 020461          307 GEDGYVRLHHFDPDY  321 (326)
Q Consensus       307 s~Dg~i~l~~~~~~~  321 (326)
                      ++|+.+.||+.-...
T Consensus       393 aeDN~LqIW~~s~~i  407 (422)
T KOG0264|consen  393 AEDNILQIWQMAENI  407 (422)
T ss_pred             cCCceEEEeeccccc
Confidence            999999999986443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=184.96  Aligned_cols=236  Identities=22%  Similarity=0.372  Sum_probs=176.6

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .++.||..+|.++.||||.++|++|+.|-.+++||+.+|++...+.. |.-.+.+++|.||+..+++|+.|+++..||++
T Consensus       263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            46889999999999999999999999999999999999999887753 45679999999999999999999999999997


Q ss_pred             CCcEEEEEecC--CCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           83 TGAQLFTFNFD--SPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        83 ~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      ... ...++.-  ..+..+...++++ +..+..++.+.+....     ++       .. ..+-..+.+|++...|.+++
T Consensus       343 gn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-----~~-------~d-r~lise~~~its~~iS~d~k  408 (519)
T KOG0293|consen  343 GNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-----AR-------VD-RGLISEEQPITSFSISKDGK  408 (519)
T ss_pred             cch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechh-----hh-------hh-hccccccCceeEEEEcCCCc
Confidence            643 2333321  2233444444444 4444444332221110     00       00 00223456899999999999


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCccee---eEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccce
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV  235 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~---v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~  235 (326)
                      ++++--.+..|++||++..+.++...   ||...   |.++.--.+..++++||+|+.|+||+.++++++..+. +...+
T Consensus       409 ~~LvnL~~qei~LWDl~e~~lv~kY~---Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v  485 (519)
T KOG0293|consen  409 LALVNLQDQEIHLWDLEENKLVRKYF---GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV  485 (519)
T ss_pred             EEEEEcccCeeEEeecchhhHHHHhh---cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee
Confidence            99999999999999999776665543   55432   3333323456799999999999999999999999986 45789


Q ss_pred             EEEEeCCCCCeeEEecCCCcc
Q 020461          236 NAVTMSPLLDHVVLGGGQDAS  256 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~  256 (326)
                      ++++++|.....++++++|+.
T Consensus       486 NcVswNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  486 NCVSWNPADPEMFASASDDGT  506 (519)
T ss_pred             eEEecCCCCHHHhhccCCCCe
Confidence            999999999998888887763

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=3.3e-25  Score=192.30  Aligned_cols=304  Identities=15%  Similarity=0.222  Sum_probs=222.7

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET   83 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~   83 (326)
                      .++++...|+++--+|--..+|.|..+|+|.|+|++.++.+.+|+...++|++++|..||+ .+++|+..|.+.+||++.
T Consensus       197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~  276 (910)
T KOG1539|consen  197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK  276 (910)
T ss_pred             EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence            5678889999999999999999999999999999999999999987779999999999998 467777889999999988


Q ss_pred             CcEEEEEe--cCCCcceeeeecCCeEEEEEc-Cccceec----------------------eeee--------eeeeccC
Q 020461           84 GAQLFTFN--FDSPARSVDFAVGDKLAVITT-DPFMELN----------------------SAIH--------VKRIARD  130 (326)
Q Consensus        84 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~~~--------~~~~~~~  130 (326)
                      .+......  +.+.+....+.+++.+.+... +..+.++                      ..+.        ......+
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D  356 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD  356 (910)
T ss_pred             CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence            77655443  223333333333332222111 0000000                      0000        0000000


Q ss_pred             C---------------------------CC--------------------------------CCCceEEEec--------
Q 020461          131 P---------------------------AD--------------------------------QGGESVLILK--------  143 (326)
Q Consensus       131 ~---------------------------~~--------------------------------~~~~~~~~~~--------  143 (326)
                      +                           ..                                .+.....++.        
T Consensus       357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~  436 (910)
T KOG1539|consen  357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR  436 (910)
T ss_pred             cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence            0                           00                                0000000110        


Q ss_pred             ---c------CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe
Q 020461          144 ---G------PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (326)
Q Consensus       144 ---~------~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~  214 (326)
                         .      ....+++++.++-|++.+.|...|+|-++++.+|-....+.....|..+|+.++.+..++.+++++.+|.
T Consensus       437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi  516 (910)
T KOG1539|consen  437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI  516 (910)
T ss_pred             EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce
Confidence               1      1245778888999999999999999999999999777776556789999999999999999999999999


Q ss_pred             EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461          215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (326)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  294 (326)
                      +++||.+....+.++.....+.++..+...+.++++-.              .+.+.++|..+..-+..+.||...|+++
T Consensus       517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d--------------df~I~vvD~~t~kvvR~f~gh~nritd~  582 (910)
T KOG1539|consen  517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD--------------DFSIRVVDVVTRKVVREFWGHGNRITDM  582 (910)
T ss_pred             EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC--------------ceeEEEEEchhhhhhHHhhccccceeee
Confidence            99999999998888888888888888876655554322              2356667766666677788999999999


Q ss_pred             EECCCCceEEeecCCCcEEEeecCCCce
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      +|||||++|++++.|++||+|++....+
T Consensus       583 ~FS~DgrWlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  583 TFSPDGRWLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             EeCCCCcEEEEeecCCcEEEEeccCcce
Confidence            9999999999999999999999987654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9e-26  Score=175.10  Aligned_cols=277  Identities=19%  Similarity=0.310  Sum_probs=187.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~   77 (326)
                      .+..+|.+-|.++.|++.|+++|+|+.|++++|||..+.    .+....+.|.+.|+.+.|.+  -|+.+++++.|++++
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            456789999999999999999999999999999996433    45677899999999999965  389999999999999


Q ss_pred             EEEccC------CcE---EEEE-ecCCCcceeeeec---CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceE-EEec
Q 020461           78 LWNVET------GAQ---LFTF-NFDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILK  143 (326)
Q Consensus        78 ~wd~~~------~~~---~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  143 (326)
                      +|.=..      +..   ..++ ...+.+..++|.|   +-+++.+..++.+.+........+.+.........+ ....
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997421      111   1111 2234566677776   345666666666555444333322222111100000 0112


Q ss_pred             cCccceeEEEEecC---CcEEEEeeCC-----CcEEEEECCCCc-cccccccccCcceeeEEEEEcCCC----CeEEEEe
Q 020461          144 GPQGRINRAVWGPL---NRTIISAGED-----AIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADG----SHFLTGS  210 (326)
Q Consensus       144 ~~~~~i~~~~~~~~---~~~l~s~~~d-----~~i~~wd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~~----~~l~s~s  210 (326)
                      .+..+..|+.|+|.   .++|+.|+.+     +.++||....+. ....+....+|..+|+.++|.|+-    ..||+++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence            34556778899874   3578888776     478999875433 444555667999999999999963    3599999


Q ss_pred             CCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461          211 LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP  290 (326)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~  290 (326)
                      .|| |+||.++.....  +..             +.+. ++..      .     ..        ...+.+..+.+|++.
T Consensus       247 kDg-v~I~~v~~~~s~--i~~-------------ee~~-~~~~------~-----~~--------l~v~~vs~~~~H~~~  290 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSA--IEE-------------EEVL-APDL------M-----TD--------LPVEKVSELDDHNGE  290 (361)
T ss_pred             cCc-EEEEEEeeccch--hhh-------------hccc-CCCC------c-----cc--------cceEEeeeccCCCCc
Confidence            999 999998642210  000             0000 0000      0     00        123445667899999


Q ss_pred             eeEEEECCCCceEEeecCCCcEEEee
Q 020461          291 INALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       291 v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      |+.+.|+-.|..|++.+.||+||+|.
T Consensus       291 VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  291 VWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             eEEEEEeeeeeEEeecCCCceeeehh
Confidence            99999999999999999999999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1.9e-25  Score=172.51  Aligned_cols=292  Identities=16%  Similarity=0.253  Sum_probs=203.9

Q ss_pred             eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCe------e---------eeccCcccceEEEEEcC-CCCe
Q 020461            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER------L---------GTYRGHNGAVWCCDVSR-DSMT   66 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~------~---------~~~~~h~~~V~~~~~~~-~~~~   66 (326)
                      -+.+.|.+.|+.++..+ .|+++++|+.||.+.+||+++..-      +         ..-.+|.-.|..+.|-| |.-.
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            35677999999999997 589999999999999999976431      1         01136777899999988 4457


Q ss_pred             EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecC---CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (326)
Q Consensus        67 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (326)
                      +.++|.|.++|+||.++-+....|.++..+-+..++|-   .-+++++....     .+.+-++      .+|.....+.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~-----~VrLCDi------~SGs~sH~Ls  185 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDV-----QVRLCDI------ASGSFSHTLS  185 (397)
T ss_pred             eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCC-----cEEEEec------cCCcceeeec
Confidence            88899999999999999988888888776665555542   22333332211     1111122      3566778899


Q ss_pred             cCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCC-ccccc-----------cccccCcceeeEEEEEcCCCCeEEEEe
Q 020461          144 GPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETG-KLLKE-----------SDKETGHKKTITSLAKAADGSHFLTGS  210 (326)
Q Consensus       144 ~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~-~~~~~-----------~~~~~~h~~~v~~v~~s~~~~~l~s~s  210 (326)
                      ||...|..+.|+|... .|++|+.||+|++||++.. .++..           ......|.+.+..++|+.++.++++.+
T Consensus       186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence            9999999999999877 4579999999999999754 22221           112457889999999999999999999


Q ss_pred             CCCeEEEeecCCcceEEEEeec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc
Q 020461          211 LDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH  287 (326)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h  287 (326)
                      .|..+++|+..+|+....-..+   ..-...+++      +-++..+ .++.....    -.+.++....++.+..+.+|
T Consensus       266 td~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~------~~~~~s~-vfv~~p~~----~~lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  266 TDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH------IQSMDSD-VFVLFPND----GSLALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             CccceEEeecccCcccccccccccccccccceEE------Eeecccc-eEEEEecC----CeEEEEEccCceEEEeeecc
Confidence            9999999999887543221110   001111111      0011111 11111000    12344555556667778889


Q ss_pred             CcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          288 FGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       288 ~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      ...|++.+|-|+=+...+|+.|+.|..|..
T Consensus       335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             cceeeEEeecCchhhhhccccCCccccccc
Confidence            899999999999999999999999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=8.7e-27  Score=175.85  Aligned_cols=202  Identities=18%  Similarity=0.343  Sum_probs=166.7

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      .|+.-|.+++|+.|.++|++|+.+..+||||++..+ ...++.+|++.|..+-|....+.++++..|++||+||..+++.
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence            478889999999999999999999999999988664 5668899999999999998888999999999999999999999


Q ss_pred             EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      +..+.+..++.++.++.++.++...-..      .+.+|+...      -..+... ...-.|.+...+|+...++.|++
T Consensus       178 v~sL~~~s~VtSlEvs~dG~ilTia~gs------sV~Fwdaks------f~~lKs~-k~P~nV~SASL~P~k~~fVaGge  244 (334)
T KOG0278|consen  178 VQSLEFNSPVTSLEVSQDGRILTIAYGS------SVKFWDAKS------FGLLKSY-KMPCNVESASLHPKKEFFVAGGE  244 (334)
T ss_pred             EEEEecCCCCcceeeccCCCEEEEecCc------eeEEecccc------ccceeec-cCccccccccccCCCceEEecCc
Confidence            9999999999999999877766544332      222232211      0111111 22346788899999999999999


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      |..++.||..+++.+...  ..+|-++|.|+.|+|+|...++||.||+|++|.+..++
T Consensus       245 d~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            999999999999876653  35899999999999999999999999999999876543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.1e-25  Score=170.76  Aligned_cols=233  Identities=15%  Similarity=0.201  Sum_probs=192.5

Q ss_pred             eeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..++|.+.|-.++|+|. ..++++++.|.+|++||...++++.......+.++ +.|+|+|++++.++.|..|-..|.++
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~  137 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDART  137 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecc
Confidence            46789999999999975 67999999999999999999999988876555554 67999999999999999999999998


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      .+.....++....+.+.|...+.+.++..+     .+.+++...      .+.+++..++.|.....++.|+|+|++|++
T Consensus       138 ~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G-----lG~v~ILsy------psLkpv~si~AH~snCicI~f~p~GryfA~  206 (313)
T KOG1407|consen  138 YKIVNEEQFKFEVNEISWNNSNDLFFLTNG-----LGCVEILSY------PSLKPVQSIKAHPSNCICIEFDPDGRYFAT  206 (313)
T ss_pred             cceeehhcccceeeeeeecCCCCEEEEecC-----CceEEEEec------cccccccccccCCcceEEEEECCCCceEee
Confidence            888777777666677777755555544332     111222211      134678888999999999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL  243 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~  243 (326)
                      |+.|..+-+||+..--+.+.+.   .+..+|..+.||-||++||+||+|..|-|=++++|..+.++....+.+.++|+|.
T Consensus       207 GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  207 GSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK  283 (313)
T ss_pred             ccccceeeccChhHhhhheeec---cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence            9999999999998665555553   4678999999999999999999999999999999999999999999999999998


Q ss_pred             CCeeEEecC
Q 020461          244 LDHVVLGGG  252 (326)
Q Consensus       244 ~~~~~~~~~  252 (326)
                      ...++.+..
T Consensus       284 ~~LLAyA~d  292 (313)
T KOG1407|consen  284 RPLLAYACD  292 (313)
T ss_pred             CceeeEEec
Confidence            777766544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.9e-26  Score=185.29  Aligned_cols=234  Identities=22%  Similarity=0.353  Sum_probs=182.4

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      .++.+++++|-.||++|++|...|.|+|+|.++...+..+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.++.. 
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-  145 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-  145 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-
Confidence            45678999999999999999999999999977666778899999999999999965 4688899999999999976532 


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGE  166 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~  166 (326)
                                                                         ...+.+|...|.+.+++|... .++|||-
T Consensus       146 ---------------------------------------------------~~~l~~htDYVR~g~~~~~~~hivvtGsY  174 (487)
T KOG0310|consen  146 ---------------------------------------------------QAELSGHTDYVRCGDISPANDHIVVTGSY  174 (487)
T ss_pred             ---------------------------------------------------EEEecCCcceeEeeccccCCCeEEEecCC
Confidence                                                               123457888899999999755 7899999


Q ss_pred             CCcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-ceEEEEe-eccceEEEEeCCC
Q 020461          167 DAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPL  243 (326)
Q Consensus       167 d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~~~s~~  243 (326)
                      ||+|++||+++. ..+.+    ..|..+|..+.+-|.|..+++++- ..+++||+-+| +.+.... +...+.|+.+..+
T Consensus       175 Dg~vrl~DtR~~~~~v~e----lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~  249 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVE----LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD  249 (487)
T ss_pred             CceEEEEEeccCCceeEE----ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecC
Confidence            999999999876 33333    358899999999999999999885 47999999854 4444443 6778999999988


Q ss_pred             CCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461          244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      +..+++++ -|+        .     .+.|+...-+-+..+. -.++|.+++.+||+..++.|-.||.+-+
T Consensus       250 ~~rLlS~s-LD~--------~-----VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  250 STRLLSGS-LDR--------H-----VKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             CceEeecc-ccc--------c-----eEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence            76666543 332        1     2233322222222222 3579999999999999999999998866

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8e-27  Score=197.20  Aligned_cols=257  Identities=25%  Similarity=0.408  Sum_probs=193.8

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEE-cCCCCeEEEEeCCCcEEEEEcc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDV-SRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~-~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      ++.|.+=|..+....+|+.|+|||.|.+|++|+...+  -+..++..|...|.|++. .++...++|||.|+.|.+||++
T Consensus        69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin  148 (735)
T KOG0308|consen   69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN  148 (735)
T ss_pred             hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence            4556666777777888999999999999999998877  578889999999999999 7788899999999999999999


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEEEEecCCcEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ++.......++.                                          ..... ..|+..+|++++.++.+-.|
T Consensus       149 ~~~~~l~~s~n~------------------------------------------~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  149 TGTATLVASFNN------------------------------------------VTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             Ccchhhhhhccc------------------------------------------cccccCCCCCccceeeeecCCcceEE
Confidence            874311111100                                          00000 12677889999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEEEe
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTM  240 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~  240 (326)
                      ++|+..+.|++||.++++.+..+   .||...|.++..+.||..++++|.||+|++||++.+.|+.++.. ...+.++..
T Consensus       187 vsGgtek~lr~wDprt~~kimkL---rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~  263 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKL---RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS  263 (735)
T ss_pred             EecCcccceEEeccccccceeee---eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence            99999999999999988766544   49999999999999999999999999999999999999999864 456889999


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +|+...++.++.+..  +..+|.+...-...++.            ...+|..+..+-+...+=+++.|+.|+=|..++.
T Consensus       264 ~~sf~~vYsG~rd~~--i~~Tdl~n~~~~tlick------------~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  264 SPSFTHVYSGGRDGN--IYRTDLRNPAKSTLICK------------EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             CCCcceEEecCCCCc--EEecccCCchhheEeec------------CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence            999888887765544  33344443221222222            2234555555533333344677888888877765


Q ss_pred             c
Q 020461          321 Y  321 (326)
Q Consensus       321 ~  321 (326)
                      +
T Consensus       330 ~  330 (735)
T KOG0308|consen  330 I  330 (735)
T ss_pred             c
Confidence            4

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.7e-25  Score=194.69  Aligned_cols=215  Identities=27%  Similarity=0.462  Sum_probs=178.0

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      +.||.+.|.+++|..-+..|++|+.|.++++||..+|++...+.+|+..|.++...  ..++++|+.|.+|++|+++++.
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc
Confidence            88999999999999878899999999999999999999999999999999999765  3478889999999999999999


Q ss_pred             EEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .+..+. +..+++++... ++.++..+.+      ..+.+|++.      .++.+..++||..+|.++.+.+. ..+++|
T Consensus       323 ~l~l~~~h~~~V~~v~~~-~~~lvsgs~d------~~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg  388 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD-EPLLVSGSYD------GTVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSG  388 (537)
T ss_pred             eEEEeccccccEEEEEec-CCEEEEEecC------ceEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEee
Confidence            998887 77788887766 4444444333      244555553      46788999999999999988775 789999


Q ss_pred             eCCCcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--cceEEEEeC
Q 020461          165 GEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMS  241 (326)
Q Consensus       165 ~~d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~s  241 (326)
                      +.|++|++||++++ +++..+   .+|...+..+.  ..+++|++++.|++|++||..++++++.+...  ..+.+++..
T Consensus       389 s~D~~IkvWdl~~~~~c~~tl---~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  389 SLDTTIKVWDLRTKRKCIHTL---QGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             eeccceEeecCCchhhhhhhh---cCCcccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence            99999999999998 776655   36777775554  45678999999999999999999999998763  445555554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=200.12  Aligned_cols=264  Identities=18%  Similarity=0.228  Sum_probs=171.3

Q ss_pred             eecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCc------ccee
Q 020461           46 GTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP------FMEL  118 (326)
Q Consensus        46 ~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  118 (326)
                      +.+. +|.+.||++.||+||+|||+||.|+.||||.+...+....-.................-......      ....
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3456 89999999999999999999999999999998764331100000000000000000000000000      0000


Q ss_pred             cee--eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEE
Q 020461          119 NSA--IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS  196 (326)
Q Consensus       119 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~  196 (326)
                      ...  .....+......-...++..++||.+.|..+.|+.+ ++|++++.|.|||||++...++++.+    .|..-|+|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTc  414 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTC  414 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE----ecCCeeEE
Confidence            000  000000000011123567778999999999999984 68999999999999999988888876    48999999


Q ss_pred             EEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecc
Q 020461          197 LAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK  275 (326)
Q Consensus       197 v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (326)
                      ++|+| |.+||++||.|+.||||++-..+.+.-......|.++++.|+|...++|.-.+.+.++.+..........+-..
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence            99999 68899999999999999998777665555567899999999999988887666555544332221111111111


Q ss_pred             cceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCCC
Q 020461          276 ILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       276 ~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~~  320 (326)
                      ..    ...+ |. .|+.+.|.|... -+...+.|..|||++.+..
T Consensus       495 ~~----Kk~~-~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  495 NK----KKKQ-GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             cC----cccc-Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence            11    1112 33 799999997544 4677788999999988544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=191.31  Aligned_cols=222  Identities=22%  Similarity=0.338  Sum_probs=161.4

Q ss_pred             eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE-EE---ec--CCCcceeeeec-CCeEEEEEcCcccee
Q 020461           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TF---NF--DSPARSVDFAV-GDKLAVITTDPFMEL  118 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~---~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~  118 (326)
                      ..+++|+..|.++++.|.|-+|+|||.|.+|++||+....... .|   +.  ..+++++.+++ ++.++++++..-..+
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            3578899999999999999999999999999999997643321 12   11  24677788886 455555555543333


Q ss_pred             ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccc---cccCcceee
Q 020461          119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESD---KETGHKKTI  194 (326)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~h~~~v  194 (326)
                      ..+...........++....+...+||...+++.+|+|+.+ .|+|++.||++|+||++..+....+.   ...+.+-++
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence            33322222333333344444556789999999999999874 88999999999999997655433322   223556778


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeec
Q 020461          195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD  274 (326)
Q Consensus       195 ~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (326)
                      +.++|++||+.+|+|+.||.|++|+.++...-..+                                             
T Consensus       321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~---------------------------------------------  355 (641)
T KOG0772|consen  321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM---------------------------------------------  355 (641)
T ss_pred             eeeecCCCcchhhhcccCCceeeeecCCcccccce---------------------------------------------
Confidence            99999999999999999999999997532110000                                             


Q ss_pred             ccceeeeccccccCc--ceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          275 KILQEEIGGVKGHFG--PINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       275 ~~~~~~~~~~~~h~~--~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                             ..-..|..  .|++|+||+||++|++=+.|+++++|++++
T Consensus       356 -------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  356 -------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             -------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence                   00123555  799999999999999999999999999986

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.3e-26  Score=199.48  Aligned_cols=243  Identities=21%  Similarity=0.307  Sum_probs=186.0

Q ss_pred             eEEEEcc-CCCEEEeecCCCCeEEEecCC---CCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEE
Q 020461           14 TYLKYNK-DGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        14 ~~~~~s~-~~~~l~s~~~d~~v~iw~~~~---~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      ..+.|+. +.++||+|+.+|.|.+||+..   ...+..|.+|...|.+++|++- ..+|+|||.||+||+||++..+...
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~  170 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS  170 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence            4556663 478999999999999999987   4566789999999999999874 5689999999999999998654432


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCC
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGED  167 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d  167 (326)
                      .+                                                    .+....|..+.|+|. +..|+++.+.
T Consensus       171 t~----------------------------------------------------~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  171 TF----------------------------------------------------RSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             cc----------------------------------------------------cccchhhhceeeccCCCceEEEecCC
Confidence            22                                                    122345677788875 4689999999


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEEEeeccceEEEEeCCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYVTERPVNAVTMSPLLD  245 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~s~~~~  245 (326)
                      |.+++||++......  ....+|.++|.++.|+|++.+||||+.|++|+|||+.+.+.  ..++....++..+.|-|...
T Consensus       199 G~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~  276 (839)
T KOG0269|consen  199 GYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS  276 (839)
T ss_pred             ceEEEeeccCchhHH--HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc
Confidence            999999998654322  23468999999999999999999999999999999986544  34445567899999999876


Q ss_pred             e-eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC-CCCceEEeecCCCcEEEeecCCCc
Q 020461          246 H-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN-PDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       246 ~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      . +++++.-+...+.+||.|-           .-.+...+..|..-++.++|. .|...|.+++.||+|....+++.+
T Consensus       277 ~hLAtcsmv~dtsV~VWDvrR-----------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  277 YHLATCSMVVDTSVHVWDVRR-----------PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             chhhhhhccccceEEEEeecc-----------ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            4 4444444444444444332           123455677899999999995 467789999999999888777654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4e-25  Score=180.30  Aligned_cols=220  Identities=26%  Similarity=0.340  Sum_probs=168.4

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      +++.|++-+|+|.+|+.|.-.+.+++|.+++|+++..+.+|-..|+|+.|+.|+.+|+|||.||.|.+|.+.+       
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-------  154 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD-------  154 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-------
Confidence            5689999999999999998999999999999999999999999999999999999999999999999998632       


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  170 (326)
                                                                                            ++.+..|+.+
T Consensus       155 ----------------------------------------------------------------------lv~a~~~~~~  164 (476)
T KOG0646|consen  155 ----------------------------------------------------------------------LVSADNDHSV  164 (476)
T ss_pred             ----------------------------------------------------------------------ecccccCCCc
Confidence                                                                                  1122222211


Q ss_pred             EEEECCCCccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeE
Q 020461          171 RIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVV  248 (326)
Q Consensus       171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  248 (326)
                              +.++.   ..+|.-+|+.+...+.  ..+++|+|.|.++++||+..+..+.++..+..+.+++++|....++
T Consensus       165 --------~p~~~---f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~y  233 (476)
T KOG0646|consen  165 --------KPLHI---FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVY  233 (476)
T ss_pred             --------cceee---eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEE
Confidence                    01111   1245556666655543  4579999999999999999999999999999999999999988888


Q ss_pred             EecCCCcceeEeecccCce---eeeEeecccceeeeccccccCc--ceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          249 LGGGQDASAVTTTDHRAGK---FEAKFFDKILQEEIGGVKGHFG--PINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       249 ~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +++..+...+..+....+.   ...+-+. .....+..+.||.+  +|+|+++|-||..|++|++||.|+||+.-.
T Consensus       234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~-~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRH-EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             ecCCcceEEeeehhcCCcccccccccccc-cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            8776665444332221110   0011111 12334556788988  999999999999999999999999998753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.5e-25  Score=180.31  Aligned_cols=235  Identities=23%  Similarity=0.365  Sum_probs=184.8

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      ++|-+.+.+++.|+||+|||+|+.|..|.||+..+.+.++.+++|.+.|.+++|-.....|++++.|++|++|+++....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            48999999999999999999999999999999999999999999999999999988778899999999999999987654


Q ss_pred             EEEE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           87 LFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      +.++ .+...+..++....+..+.++.     .+....+|.+..       +...++.++.+.+.+++|-.+ ..|++|+
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGg-----rDrT~rlwKi~e-------esqlifrg~~~sidcv~~In~-~HfvsGS  345 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGG-----RDRTVRLWKIPE-------ESQLIFRGGEGSIDCVAFIND-EHFVSGS  345 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEecc-----ccceeEEEeccc-------cceeeeeCCCCCeeeEEEecc-cceeecc
Confidence            4332 3344455555444444443331     123444555522       355677889999999998764 4689999


Q ss_pred             CCCcEEEEECCCCcccccccccc---------CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc----ceEEEEeec
Q 020461          166 EDAIVRIWDTETGKLLKESDKET---------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVTE  232 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~---------~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~  232 (326)
                      .||.|.+|++-+.+++.......         .+..-|++++..|...++++|+.+|.|++|-+..+    +++..+...
T Consensus       346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~  425 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV  425 (479)
T ss_pred             CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence            99999999998877765433211         12236899999999999999999999999987765    566666667


Q ss_pred             cceEEEEeCCCCCeeEEecCCC
Q 020461          233 RPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      .-|+.++|++++..++++.|..
T Consensus       426 GfVNsl~f~~sgk~ivagiGkE  447 (479)
T KOG0299|consen  426 GFVNSLAFSNSGKRIVAGIGKE  447 (479)
T ss_pred             cEEEEEEEccCCCEEEEecccc
Confidence            7899999999999888886654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=3.7e-26  Score=187.00  Aligned_cols=241  Identities=17%  Similarity=0.300  Sum_probs=182.6

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~   82 (326)
                      +++.||..+|..++|+++|..++|+|-|+.+++||.++|.++..|.. ...+.|+.|+|++ +.+++|+.|+.|+.||++
T Consensus       252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR  330 (503)
T KOG0282|consen  252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR  330 (503)
T ss_pred             hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence            67889999999999999999999999999999999999999887754 4467899999998 789999999999999999


Q ss_pred             CCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           83 TGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      +++.+..+.. -..+..+.|.+++...+.+++.     ..+.+|.......     .-....-+.-...++..+|+++++
T Consensus       331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd-----ks~riWe~~~~v~-----ik~i~~~~~hsmP~~~~~P~~~~~  400 (503)
T KOG0282|consen  331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDD-----KSVRIWENRIPVP-----IKNIADPEMHTMPCLTLHPNGKWF  400 (503)
T ss_pred             chHHHHHHHhhhhheeeeEEccCCceEeeeccC-----ccEEEEEcCCCcc-----chhhcchhhccCcceecCCCCCee
Confidence            9987655533 3566777888776655555432     1233333221100     000111122235678889999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcc--eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEE
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAV  238 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~  238 (326)
                      +.=+.|+.|.++.+...-.........||.  +.-+.+.|||||.+|++|+.||.+.+||.++-+++..+.. ..++..+
T Consensus       401 ~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v  480 (503)
T KOG0282|consen  401 AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV  480 (503)
T ss_pred             hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence            999999999999865332222222234664  3457789999999999999999999999999999888864 4788999


Q ss_pred             EeCCCCCeeEEecCCCc
Q 020461          239 TMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~  255 (326)
                      .|+|.....+++++.++
T Consensus       481 ~wHP~e~Skvat~~w~G  497 (503)
T KOG0282|consen  481 DWHPVEPSKVATCGWDG  497 (503)
T ss_pred             EecCCCcceeEecccCc
Confidence            99999888877777665

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=177.09  Aligned_cols=286  Identities=15%  Similarity=0.225  Sum_probs=196.0

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecC--CCCeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~--~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      ..+|+++.|+|..++|++|+.|++++||.+.  ....+..+.--.-+|.+..|+|+|+ .+++++....+..||+.+++.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            3679999999999999999999999999764  3344555544566899999999998 899999999999999988875


Q ss_pred             EEEEec----CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           87 LFTFNF----DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        87 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ...-..    ......+.+++.+.+++..+..     +.+++...      .+++.+..++ -.+.|..+.|+.+++.|+
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lLha------kT~eli~s~K-ieG~v~~~~fsSdsk~l~  360 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLLHA------KTKELITSFK-IEGVVSDFTFSSDSKELL  360 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEeehh------hhhhhhheee-eccEEeeEEEecCCcEEE
Confidence            432221    1122334556665555543321     11222111      1222333222 246788999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC------cceEEEEee-ccce
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART------LELIKTYVT-ERPV  235 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~-~~~~  235 (326)
                      .++.+|.|.+||+++..+++.+....  .-.-++++.++++.+||+||..|.|-|||.++      .+++..+.. ...|
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I  438 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI  438 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecC--ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence            99999999999999887766543221  12347889999999999999999999999764      344444332 3468


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      +.+.|+++...++++...-...+...-...    ...     -.++......-+.|+||+|||.|.+||.|.++|.+.||
T Consensus       439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS----~TV-----FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  439 TSLQFNHDAQILAIASRVKKNALRLVHVPS----CTV-----FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             eeeeeCcchhhhhhhhhccccceEEEeccc----eee-----eccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence            999999999888877543322222110000    000     11111112233569999999999999999999999999


Q ss_pred             ecC
Q 020461          316 HFD  318 (326)
Q Consensus       316 ~~~  318 (326)
                      .+.
T Consensus       510 kL~  512 (514)
T KOG2055|consen  510 KLH  512 (514)
T ss_pred             eec
Confidence            863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.2e-23  Score=164.12  Aligned_cols=245  Identities=17%  Similarity=0.226  Sum_probs=191.6

Q ss_pred             ecCCceeEEEEccCCCEEEeecC--CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      .++-.+..++|-...+.+..++.  |.+||.-++.+.+.++.|.||...|.+|+.+|-++.++|++.|++|++||++..+
T Consensus        54 skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~  133 (311)
T KOG1446|consen   54 SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK  133 (311)
T ss_pred             cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC
Confidence            34446778889888777776666  8999999999999999999999999999999999999999999999999998665


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      +...+..                                                      ..-..++|+|.|-++|.+.
T Consensus       134 cqg~l~~------------------------------------------------------~~~pi~AfDp~GLifA~~~  159 (311)
T KOG1446|consen  134 CQGLLNL------------------------------------------------------SGRPIAAFDPEGLIFALAN  159 (311)
T ss_pred             CceEEec------------------------------------------------------CCCcceeECCCCcEEEEec
Confidence            4322111                                                      0112357899999999998


Q ss_pred             CCCcEEEEECCCC--ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc----eEEEE
Q 020461          166 EDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP----VNAVT  239 (326)
Q Consensus       166 ~d~~i~~wd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~  239 (326)
                      ..+.|+++|++.-  .+...+....+...+.+.+.||+||++++.++..+.+++.|.-+|....++.....    .-..+
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            8889999999853  33344433335567899999999999999999999999999999998888764332    24778


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      |+|+++.++.+.+++              .+..|+...+.++..+.+ +.+++.++.|+|.-.++||+  +..+.+|--+
T Consensus       240 ftPds~Fvl~gs~dg--------------~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  240 FTPDSKFVLSGSDDG--------------TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             ECCCCcEEEEecCCC--------------cEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence            999998877665433              245666677777787777 78899999999988888755  5678888766


Q ss_pred             CCce
Q 020461          319 PDYF  322 (326)
Q Consensus       319 ~~~~  322 (326)
                      .+.+
T Consensus       304 ~~~~  307 (311)
T KOG1446|consen  304 EDAL  307 (311)
T ss_pred             cccc
Confidence            5443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.2e-25  Score=188.63  Aligned_cols=241  Identities=22%  Similarity=0.324  Sum_probs=196.7

Q ss_pred             EEEEc-cCCCEEEeecCCCCeEEEecCCCC------eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461           15 YLKYN-KDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus        15 ~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~------~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      .+..+ |.+++|++||.||.|++|+.....      .+..++.|...|+.+....+++.|+|+|.|-+|++|+...+.. 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-  107 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-  107 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-
Confidence            45555 567789999999999999764321      3677889999999999999999999999999999999864321 


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE-ecCCcEEEEeeC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW-GPLNRTIISAGE  166 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~~  166 (326)
                                                                       -++.+++.|...|.++++ -++...+++||-
T Consensus       108 -------------------------------------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGL  138 (735)
T KOG0308|consen  108 -------------------------------------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGL  138 (735)
T ss_pred             -------------------------------------------------hhHhhhhcccchheeeeecccCceeEEecCC
Confidence                                                             122334567778888888 566778999999


Q ss_pred             CCcEEEEECCCCcc--cccc-----ccc-cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEE
Q 020461          167 DAIVRIWDTETGKL--LKES-----DKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (326)
Q Consensus       167 d~~i~~wd~~~~~~--~~~~-----~~~-~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (326)
                      |+.|.+||++++..  +...     ... .|+...|.+++..++|..+++|+..+-|++||.++.+.+..+. +...+..
T Consensus       139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~  218 (735)
T KOG0308|consen  139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV  218 (735)
T ss_pred             CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence            99999999998733  2211     112 3788999999999999999999999999999999998888876 4568999


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +..+++|..++.+++++              .+++|+...+..+..+..|...|+++.-+|+=.++.+|+.||.|..=++
T Consensus       219 ll~~dDGt~~ls~sSDg--------------tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  219 LLVNDDGTRLLSASSDG--------------TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             EEEcCCCCeEeecCCCc--------------eEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence            99999999888765543              3678888888888889999999999999999999999999999987665


Q ss_pred             CC
Q 020461          318 DP  319 (326)
Q Consensus       318 ~~  319 (326)
                      .+
T Consensus       285 ~n  286 (735)
T KOG0308|consen  285 RN  286 (735)
T ss_pred             CC
Confidence            54

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.3e-24  Score=187.34  Aligned_cols=243  Identities=19%  Similarity=0.265  Sum_probs=186.1

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      -.|....+.++|.|+|+.|.+|+.||.|++|+.... +...++.-+...|.+++-  ++.+|++|+.+++|.+|.+..++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            478999999999999999999999999999987665 444445447888888875  45589999999999999887654


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      .-..+                                                    .--.-++++++++.+|.+++.||
T Consensus        88 ~~~iL----------------------------------------------------~Rftlp~r~~~v~g~g~~iaags  115 (933)
T KOG1274|consen   88 EDTIL----------------------------------------------------ARFTLPIRDLAVSGSGKMIAAGS  115 (933)
T ss_pred             cccee----------------------------------------------------eeeeccceEEEEecCCcEEEeec
Confidence            31100                                                    00013467788899999999999


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee---------ccceE
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---------ERPVN  236 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~~  236 (326)
                      +|-.|++-+..+......+   .+|.++|.++.++|++.+||+.+.||.|++||++++.+..++..         ...+.
T Consensus       116 dD~~vK~~~~~D~s~~~~l---rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~  192 (933)
T KOG1274|consen  116 DDTAVKLLNLDDSSQEKVL---RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICT  192 (933)
T ss_pred             CceeEEEEeccccchheee---cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceee
Confidence            9999999999877655544   58999999999999999999999999999999999887777642         23466


Q ss_pred             EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      -++|+|.+..+++.+.++...+..         ..-|...-.  + ....|...+.+++|||.|+|||+++.||.|-||+
T Consensus       193 ~~aW~Pk~g~la~~~~d~~Vkvy~---------r~~we~~f~--L-r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  193 RLAWHPKGGTLAVPPVDNTVKVYS---------RKGWELQFK--L-RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN  260 (933)
T ss_pred             eeeecCCCCeEEeeccCCeEEEEc---------cCCceehee--e-cccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence            788999988877765544332221         112221110  1 1123445599999999999999999999999999


Q ss_pred             cC
Q 020461          317 FD  318 (326)
Q Consensus       317 ~~  318 (326)
                      ++
T Consensus       261 v~  262 (933)
T KOG1274|consen  261 VD  262 (933)
T ss_pred             cc
Confidence            98

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=7.9e-25  Score=187.29  Aligned_cols=245  Identities=19%  Similarity=0.260  Sum_probs=192.9

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC---CCeEEEEeCCCcEEEEEccCCcE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      .-.+.+++.||+|++||+|..-|.++||++.+-+....+.+|...|.|+.|+-.   .++|++++.|+.|.+||....-.
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            456899999999999999999999999999988888888999999999999853   46899999999999999976432


Q ss_pred             -EEEE-ecCCCcceeeeecCC---eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC----ccceeEEEEecC
Q 020461           87 -LFTF-NFDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP----QGRINRAVWGPL  157 (326)
Q Consensus        87 -~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~  157 (326)
                       +..+ .+...+.+++|...+   +++.++.++.+      .+. ..+.    .+.-....++|    ...++.++..|.
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksi------mFr-~~qk----~~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI------MFR-VNQK----ASSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhh------hee-hhcc----ccCceeccccccccccceEEEeeeCCC
Confidence             2222 234566777776433   33333333221      111 1110    00011111222    245788999999


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEE
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA  237 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  237 (326)
                      .+++++++.|..|+|||+.+++..+.+....+|.+....+..+|.|.|+++.+.|.++.++|.-+++|+.+         
T Consensus       608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~---------  678 (1080)
T KOG1408|consen  608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ---------  678 (1080)
T ss_pred             cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh---------
Confidence            99999999999999999999999999888889999999999999999999999999999999988877522         


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                                                                    +.||.+.|+.+.|.+|.+.|++.+.||.|-+|++
T Consensus       679 ----------------------------------------------m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  679 ----------------------------------------------MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             ----------------------------------------------hcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence                                                          4578899999999999999999999999999998


Q ss_pred             CCC
Q 020461          318 DPD  320 (326)
Q Consensus       318 ~~~  320 (326)
                      +-+
T Consensus       713 p~~  715 (1080)
T KOG1408|consen  713 PLT  715 (1080)
T ss_pred             chh
Confidence            753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=7e-26  Score=193.70  Aligned_cols=237  Identities=24%  Similarity=0.395  Sum_probs=196.7

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      +..|...+.|+..-..++.+++|+.|..+.+|.......+..+.+|..+|.++.|+++..+|++|+.+|+||+||+++++
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            34577888888887778899999999999999988888888899999999999999999999999999999999998654


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      .+                                                    ..+.||...+.++.|+|.+.++++|+
T Consensus       104 ~v----------------------------------------------------rtLtgh~~~~~sv~f~P~~~~~a~gS  131 (825)
T KOG0267|consen  104 IV----------------------------------------------------RTLTGHLLNITSVDFHPYGEFFASGS  131 (825)
T ss_pred             hh----------------------------------------------------hhhhccccCcceeeeccceEEecccc
Confidence            32                                                    23457777888899999999999999


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL  244 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~  244 (326)
                      .|+.+++||++...+...+.   +|...+..+.++|+|.++++|+.|.+++|||...++...+|. ++..+.++.++|..
T Consensus       132 tdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e  208 (825)
T KOG0267|consen  132 TDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE  208 (825)
T ss_pred             ccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh
Confidence            99999999998766766553   588999999999999999999999999999999999999987 67889999999864


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCc
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY  311 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~  311 (326)
                       .+...|+.|.             .++||+..+.+-+.........|.+.+|+|+++.+++|..+..
T Consensus       209 -~Lla~Gs~d~-------------tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  209 -VLLAPGSSDR-------------TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             -hhhccCCCCc-------------eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence             3444444443             2456666554545545555678999999999999998876543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2.2e-23  Score=175.07  Aligned_cols=293  Identities=20%  Similarity=0.293  Sum_probs=192.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~   82 (326)
                      .+++||++.|.+++.+|.|.+|++|+.||+||||.+.+|.|+.++.- .+.|.|++|+|.+.. +++++....+.+-+..
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            78999999999999999999999999999999999999999988753 568999999997652 3334444445555543


Q ss_pred             CCcEEE--------------------------------------EEecCCCcceeeeec-CCeEEEEEcCccceeceeee
Q 020461           83 TGAQLF--------------------------------------TFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH  123 (326)
Q Consensus        83 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  123 (326)
                      -|..+.                                      .+.+..++..+.|+- ++.++.+..+..   +..+.
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~---~~~Vl  549 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG---NKSVL  549 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC---cceEE
Confidence            331111                                      111122223333332 222222221100   00000


Q ss_pred             eeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (326)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  203 (326)
                      +..+..      .....-++-..+.|.++.|+|...+|+.+... .|++||+-.+..++.+..   -...|..++++|.|
T Consensus       550 iHQLSK------~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~t---g~kwiS~msihp~G  619 (733)
T KOG0650|consen  550 IHQLSK------RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLT---GSKWISSMSIHPNG  619 (733)
T ss_pred             EEeccc------ccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhc---CCeeeeeeeecCCC
Confidence            111100      00111122234568899999999988888765 499999988777665432   34568899999999


Q ss_pred             CeEEEEeCCCeEEEeecCCc-ceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeee
Q 020461          204 SHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI  281 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  281 (326)
                      ..|+.|+.|+.+..+|+.-. ++.+++. +...+..+++++....++++ .+|+.++... .++   ...+.......++
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~-sdDgtv~Vfh-g~V---Y~Dl~qnpliVPl  694 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG-SDDGTVIVFH-GMV---YNDLLQNPLIVPL  694 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee-cCCCcEEEEe-eee---ehhhhcCCceEee
Confidence            99999999999999998754 3444443 45678999999877665554 4444433221 110   0111112233456


Q ss_pred             ccccccCcc----eeEEEECCCCceEEeecCCCcEEEe
Q 020461          282 GGVKGHFGP----INALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       282 ~~~~~h~~~----v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      ..+.+|...    |..+.|+|...+|.|+++||+||||
T Consensus       695 K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  695 KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            678899877    9999999999999999999999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=3.9e-22  Score=167.14  Aligned_cols=269  Identities=16%  Similarity=0.142  Sum_probs=181.5

Q ss_pred             CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecCCCcceeee
Q 020461           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (326)
Q Consensus        23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  101 (326)
                      +.+++++.|+.+++||..+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+........+.+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~   80 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL   80 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence            5788999999999999999998888876654 6779999999876 5677889999999998887665544333455667


Q ss_pred             ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC-cEEEEECCCCcc
Q 020461          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-IVRIWDTETGKL  180 (326)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~  180 (326)
                      ++++..+++....    ...+.++++..      ...+..+.. ...+..+.|+|++..+++++.++ .+..||.++++.
T Consensus        81 ~~~g~~l~~~~~~----~~~l~~~d~~~------~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        81 HPNGKILYIANED----DNLVTVIDIET------RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             CCCCCEEEEEcCC----CCeEEEEECCC------CeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence            7666544433211    12233333321      123333332 23457799999999999888765 567789887765


Q ss_pred             ccccccccCcceeeEEEEEcCCCCeEEEE-eCCCeEEEeecCCcceEEEEeec--------cceEEEEeCCCCCeeEEec
Q 020461          181 LKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTE--------RPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       181 ~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~~~~~  251 (326)
                      .....    .......+++++++.+|+.+ ..++.|++||+++++.+..+...        .....++++|+++.++++.
T Consensus       150 ~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       150 VDNVL----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             EEEEE----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            44321    12345678999999988554 56999999999999887765421        1234678899998866654


Q ss_pred             CCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee-cCCCcEEEeecCCCc
Q 020461          252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG-GEDGYVRLHHFDPDY  321 (326)
Q Consensus       252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~-s~Dg~i~l~~~~~~~  321 (326)
                      +.+.. +..+|.+.            .+....+ .+...+.+++|+|+|++|+++ +.+|+|++|+.+...
T Consensus       226 ~~~~~-i~v~d~~~------------~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       226 GPANR-VAVVDAKT------------YEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCCe-EEEEECCC------------CcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            33321 33333322            2211111 123468899999999999876 569999999988754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.1e-25  Score=192.62  Aligned_cols=190  Identities=26%  Similarity=0.401  Sum_probs=169.6

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      -|.+|+.+|.++.|+++-.+|++|+.+|+|++||++.+..++++.+|...+.+++|+|-+.++++++.|.-+++||++..
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999998743


Q ss_pred             cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .+.                                                    ...++|...+..+.|+|+|+++++|
T Consensus       145 Gc~----------------------------------------------------~~~~s~~~vv~~l~lsP~Gr~v~~g  172 (825)
T KOG0267|consen  145 GCS----------------------------------------------------HTYKSHTRVVDVLRLSPDGRWVASG  172 (825)
T ss_pred             Cce----------------------------------------------------eeecCCcceeEEEeecCCCceeecc
Confidence            332                                                    2234577778899999999999999


Q ss_pred             eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCC
Q 020461          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPL  243 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~  243 (326)
                      ++|.++++||...|+...++.   +|...+.++.++|..-.+++|+.|+++++||+++.+.+.....+ ..+.+..|+|+
T Consensus       173 ~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD  249 (825)
T ss_pred             CCcceeeeecccccccccccc---cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence            999999999999998887764   68899999999999999999999999999999999988876543 57899999999


Q ss_pred             CCeeEE
Q 020461          244 LDHVVL  249 (326)
Q Consensus       244 ~~~~~~  249 (326)
                      +..+..
T Consensus       250 ~~~~~~  255 (825)
T KOG0267|consen  250 GKIVLS  255 (825)
T ss_pred             ceeeec
Confidence            876654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=2.5e-23  Score=168.45  Aligned_cols=237  Identities=22%  Similarity=0.297  Sum_probs=191.1

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      ..+.++...|..+.+++|+.|..+.++|...+..+.+++||+..|..+.|+++...+++++.|..|++|.......    
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~----  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE----  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence            4577888888778899999999999999999999999999999999999999999999999999999998643211    


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  170 (326)
                                                                      ......|+++|+.+..+|.|.||+++++|++.
T Consensus       296 ------------------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w  327 (506)
T KOG0289|consen  296 ------------------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW  327 (506)
T ss_pred             ------------------------------------------------ccccccccccceeeeeccCCcEEEEecCCceE
Confidence                                                            11234578889999999999999999999999


Q ss_pred             EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEE
Q 020461          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~  249 (326)
                      ..-|++++..+...... .-.-.+++.+|+|||..|.+|+.|+.++|||++++..+..|. +..++..++|+.+|-.+++
T Consensus       328 ~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat  406 (506)
T KOG0289|consen  328 AFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT  406 (506)
T ss_pred             EEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE
Confidence            99999999877654321 223458999999999999999999999999999999888886 4578999999999988877


Q ss_pred             ecCCCcceeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEE
Q 020461          250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      +..++.  +..||.|..+    .+        ..+.- ....|.++.|.+.|.+|+.++.|=+|.+
T Consensus       407 ~add~~--V~lwDLRKl~----n~--------kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~  458 (506)
T KOG0289|consen  407 AADDGS--VKLWDLRKLK----NF--------KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI  458 (506)
T ss_pred             EecCCe--EEEEEehhhc----cc--------ceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence            654443  5566665432    11        11111 1126899999999999999977766655

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=2.3e-24  Score=168.74  Aligned_cols=247  Identities=25%  Similarity=0.390  Sum_probs=184.1

Q ss_pred             CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe---------cCCCcceeeeecCCeEEEEEcCccceece
Q 020461           50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN---------FDSPARSVDFAVGDKLAVITTDPFMELNS  120 (326)
Q Consensus        50 ~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (326)
                      +....+.|..|+||+++|++|+.||.|.+||..+|+....++         .+.++.++.|+.+..+++.+     ..+.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG-----sqDG  285 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG-----SQDG  285 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc-----CcCC
Confidence            345567889999999999999999999999999988655433         34567778887766665543     2345


Q ss_pred             eeeeeeeccCCCCCCCceEEEe-ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461          121 AIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                      .+++|++.      +|.+++.+ +.|...|+++.|+.++..+++++.|.++++-.+++|++++++.   ||+.-|+...|
T Consensus       286 kIKvWri~------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~f  356 (508)
T KOG0275|consen  286 KIKVWRIE------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATF  356 (508)
T ss_pred             cEEEEEEe------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---CccccccceEE
Confidence            67777764      34444444 4899999999999999999999999999999999999988774   89999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cceEEEEeCCC-CCeeEEecCCCcceeEeecccCceeeeEeecc
Q 020461          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK  275 (326)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (326)
                      .+||..+++++.||+|++|+.++.+|+.++.+.   .+++.+-.-|- ..+++++.......+-..   .+.. ++-+..
T Consensus       357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~---qGQv-VrsfsS  432 (508)
T KOG0275|consen  357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM---QGQV-VRSFSS  432 (508)
T ss_pred             cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec---cceE-Eeeecc
Confidence            999999999999999999999999999998643   46777665554 345666544333222111   1111 111110


Q ss_pred             cceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461          276 ILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       276 ~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                        +      +-..+..-+.+.||.|.++...++|+.+..|++....+
T Consensus       433 --G------kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  433 --G------KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL  471 (508)
T ss_pred             --C------CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence              0      11224556778899999999999999999998766543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=2.6e-23  Score=169.38  Aligned_cols=290  Identities=17%  Similarity=0.221  Sum_probs=193.1

Q ss_pred             eeeeecCCceeEEEEccCC--CEEEeecCCCCeEEEecC----CCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcE
Q 020461            4 ILMKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFAD----NGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTA   76 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~--~~l~s~~~d~~v~iw~~~----~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i   76 (326)
                      .+.+-|...|++++|+|.-  +++++|..-|.|-+||+.    +...+..+..|.++|.++.|+|.+ ..+++.|.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            4567788999999999964  588899999999999994    334577788999999999999954 579999999999


Q ss_pred             EEEEccCCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           77 KLWNVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      ++=|++++..-..+..+   .....+++...+..++...+ +    +...+++..     ..+..+..++-|...|+.++
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-~----G~f~~iD~R-----~~~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-V----GNFNVIDLR-----TDGSEYENLRLHKKKITSVA  329 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-c----cceEEEEee-----cCCccchhhhhhhcccceee
Confidence            99999875432222221   11122334433333332221 1    111222221     12234455667778999999


Q ss_pred             EecCCc-EEEEeeCCCcEEEEECCCCccccc-cccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec----CCcceEE
Q 020461          154 WGPLNR-TIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA----RTLELIK  227 (326)
Q Consensus       154 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~----~~~~~~~  227 (326)
                      ++|... +|+|+|.|++.+|||++.-..... +.....|...|.+..|||.+..|+|.+.|.+|++||.    ...++..
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~  409 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG  409 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence            999765 788999999999999975332222 3345679999999999999889999999999999998    4455555


Q ss_pred             EEeeccc------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeE-EEECCC
Q 020461          228 TYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINA-LAFNPD  299 (326)
Q Consensus       228 ~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~-v~~s~d  299 (326)
                      ++.+...      .--..|.|+.+.++++.-.+              .+.+++...++-+..+.+- ...|.+ ..|+|-
T Consensus       410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r--------------~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~  475 (498)
T KOG4328|consen  410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR--------------PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM  475 (498)
T ss_pred             eeeccCcccccccchhheeCCCccEEEEeccCc--------------ceeEEcCCCCEEeeeccCccccccccceeeccc
Confidence            5554321      23456888766666543322              2444554444433322211 123433 689998


Q ss_pred             CceEEe-ecCCCcEEEeec
Q 020461          300 GKSFSS-GGEDGYVRLHHF  317 (326)
Q Consensus       300 ~~~lat-~s~Dg~i~l~~~  317 (326)
                      +..+|+ ++.-|.|.||.-
T Consensus       476 ~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  476 RDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ccceeccCCccceEEEEec
Confidence            885544 455788888754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=4.1e-23  Score=160.00  Aligned_cols=233  Identities=21%  Similarity=0.334  Sum_probs=175.6

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC--eEEEEeCCCcEEEEE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWN   80 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~d~~i~~wd   80 (326)
                      |..+..|.++|.+++|+.||..+++|+.|+.+++||+.++. +..+-.|.++|.++.|-+...  .|+|||+|++||.||
T Consensus        65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence            45677899999999999999999999999999999999995 456778999999999977654  899999999999999


Q ss_pred             ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      .+...++..++.+..+-+.+                                                       -...+
T Consensus       144 ~R~~~pv~t~~LPeRvYa~D-------------------------------------------------------v~~pm  168 (347)
T KOG0647|consen  144 TRSSNPVATLQLPERVYAAD-------------------------------------------------------VLYPM  168 (347)
T ss_pred             cCCCCeeeeeeccceeeehh-------------------------------------------------------ccCce
Confidence            99877776655432211110                                                       01235


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-----ee----
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-----VT----  231 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~----  231 (326)
                      ++.+..++.|.++.++.+....... ...-...++|++..+|....+-|+-+|.+-+..+..+.....+     ..    
T Consensus       169 ~vVata~r~i~vynL~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  169 AVVATAERHIAVYNLENPPTEFKRI-ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV  247 (347)
T ss_pred             eEEEecCCcEEEEEcCCCcchhhhh-cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence            6778888999999997654432211 1223456889999999888899999999999887764222221     11    


Q ss_pred             ---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461          232 ---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG  306 (326)
Q Consensus       232 ---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~  306 (326)
                         -..|+.++|+|....++++|+++.              ..+||.....++.....|..+|.+.+|+.+|.++|-+
T Consensus       248 ~~~VYaVNsi~FhP~hgtlvTaGsDGt--------------f~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHGTLVTAGSDGT--------------FSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CCceEEecceEeecccceEEEecCCce--------------EEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence               135889999998888887776542              2466666666666677799999999999999998755

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=2e-23  Score=177.98  Aligned_cols=237  Identities=28%  Similarity=0.408  Sum_probs=181.9

Q ss_pred             eeeeecCCceeE-EEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTY-LKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~-~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      ..+.+|.+.|.+ ++|-+ ++-+|++|+.|+.+.+|.....+..+++++|+..|.+++...++. ++|||+|.++++|-.
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI  129 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence            456678888877 88886 444699999999999999999999999999999999998776666 899999999999976


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ..                                                      ....+.+|+..|..+..-|.+ .+
T Consensus       130 ~~------------------------------------------------------l~~~l~gH~asVWAv~~l~e~-~~  154 (745)
T KOG0301|consen  130 GE------------------------------------------------------LVYSLQGHTASVWAVASLPEN-TY  154 (745)
T ss_pred             hh------------------------------------------------------hhcccCCcchheeeeeecCCC-cE
Confidence            32                                                      122256888999988888876 89


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEe
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~  240 (326)
                      +||+.|.+|++|.-  +++++++   .+|...|+.+++-+++ .|+++++||.|++|++ +++++..+. +..-+.++++
T Consensus       155 vTgsaDKtIklWk~--~~~l~tf---~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  155 VTGSADKTIKLWKG--GTLLKTF---SGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM  227 (745)
T ss_pred             EeccCcceeeeccC--Cchhhhh---ccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence            99999999999975  5556555   4899999999998875 5899999999999999 677777665 4556788886


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ...+..++++ |+|..             +++|+..  +..+.+.--.--|+++.+-++|. +++|+.||.||||..+.+
T Consensus       228 ~~~~~~Ivs~-gEDrt-------------lriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  228 ALSDGLIVST-GEDRT-------------LRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             cCCCCeEEEe-cCCce-------------EEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence            6665555554 44432             3445433  22222221222588888877666 566888999999998854

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3e-22  Score=170.47  Aligned_cols=286  Identities=16%  Similarity=0.222  Sum_probs=206.7

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeeccCcc-cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      ..+|.+++|+.+++.||.+=.||.|.||++..+= +...+.++. +.|.+++|++ +..|+|.+.+|+|--||+.+.++.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence            3679999999999999999999999999998763 344556654 4699999994 567899999999999999999988


Q ss_pred             EEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           88 FTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      ..++. .+++.+++..+.+....++.+......-.+....+         .....+.-..++|.++.|+|++..+++|+.
T Consensus       104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen  104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------TYKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------EEEeecccccceEEEEEecCCccEEEeccc
Confidence            87764 35566677777665555543321111111111111         111222233588999999999999999999


Q ss_pred             CCcEEEEECCCCccccc----ccc-ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEe
Q 020461          167 DAIVRIWDTETGKLLKE----SDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~----~~~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~  240 (326)
                      ||.|++||..++..+..    +.. ..+....|.+|.+-.++ .+++|..-|+|++||...+.+++.+. +...+.+++.
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav  253 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV  253 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence            99999999998876651    111 12234568888888775 69999999999999999999888875 5678999999


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      +++.+.++++|.+...+..........     |-.     ......|...|.+++..++  .+.+|+.|.++.+-..+
T Consensus       254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~-----wv~-----~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKIIQYSLTTNKSE-----WVI-----NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR  319 (691)
T ss_pred             cCCCCeEEEccCCCceEEEEecCCccc-----eee-----eccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence            999999999887766543322211111     211     1223467788999999866  99999999999884443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=3.4e-23  Score=175.12  Aligned_cols=276  Identities=18%  Similarity=0.250  Sum_probs=180.9

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee--ccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~   82 (326)
                      ...|...|..+.|-|-...|++++.|.+++.||+++.+++..  +.||.+.|.+++|++.. ..|++|+.||.|.|||+.
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            456999999999999556899999999999999999998877  89999999999999965 579999999999999986


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE---EEEecCCc
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR---AVWGPLNR  159 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~  159 (326)
                      ....-....+.   +.+.          .     .....       ..+.......+...+.+.+.|.+   +.+..|..
T Consensus       176 ~n~~d~~e~~~---~~~~----------~-----~~n~~-------ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~  230 (720)
T KOG0321|consen  176 CNGVDALEEFD---NRIY----------G-----RHNTA-------PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES  230 (720)
T ss_pred             ccchhhHHHHh---hhhh----------c-----cccCC-------CCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence            54310000000   0000          0     00000       00000001112223344444544   55667788


Q ss_pred             EEEEeeC-CCcEEEEECCCCcccccccc-----ccCc---ceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEE
Q 020461          160 TIISAGE-DAIVRIWDTETGKLLKESDK-----ETGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKT  228 (326)
Q Consensus       160 ~l~s~~~-d~~i~~wd~~~~~~~~~~~~-----~~~h---~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~  228 (326)
                      .|+++|. |+.|++||+++.........     ..-|   ...++++..+..|.+|.+.+.|+.|++||+.+...  +..
T Consensus       231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~  310 (720)
T KOG0321|consen  231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE  310 (720)
T ss_pred             eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence            8998888 99999999987554432221     1122   34578888899999999999999999999986432  222


Q ss_pred             Eeec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeeeccccccCcceeEEEECCCC-ceE
Q 020461          229 YVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPINALAFNPDG-KSF  303 (326)
Q Consensus       229 ~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~-~~l  303 (326)
                      +...   ..-..-..+|++..++.+......              ++|.... ......+.||.-.|++++|.|.- .-+
T Consensus       311 ~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a--------------yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v  376 (720)
T KOG0321|consen  311 FSGKLNSSFYVKSELSPDDCSLLSGSSDEQA--------------YIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPV  376 (720)
T ss_pred             ccCcccceeeeeeecCCCCceEeccCCCcce--------------eeeeecCccCChhhhhCcceEEEEEeeccccCCCc
Confidence            2111   112233457777666655433322              2232221 23345678999999999998743 347


Q ss_pred             EeecCCCcEEEeecCCC
Q 020461          304 SSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       304 at~s~Dg~i~l~~~~~~  320 (326)
                      |||++|-++++|++-++
T Consensus       377 ~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  377 ATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeeccCcceEEEeccCc
Confidence            78899999999999543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=9.4e-24  Score=174.02  Aligned_cols=242  Identities=18%  Similarity=0.296  Sum_probs=188.5

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC---CeeeeccC--cccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~---~~~~~~~~--h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .|..-|.++..|...+++++|+. |-|+|||+...   ..+..+..  ....|.++.+.|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            46677888899988889998876 78999998643   23444433  34568889999999999999999999999997


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ........+...                                                  ..-..+.++.+||.+..+
T Consensus       496 apTprikaelts--------------------------------------------------sapaCyALa~spDakvcF  525 (705)
T KOG0639|consen  496 APTPRIKAELTS--------------------------------------------------SAPACYALAISPDAKVCF  525 (705)
T ss_pred             CCCcchhhhcCC--------------------------------------------------cchhhhhhhcCCccceee
Confidence            654322211110                                                  011234567889999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~  242 (326)
                      ++..||.|.|||++....++.+   .||...+.|+.+++||..|-||+.|.+||.||++++..+.++.....|.++...|
T Consensus       526 sccsdGnI~vwDLhnq~~Vrqf---qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP  602 (705)
T KOG0639|consen  526 SCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP  602 (705)
T ss_pred             eeccCCcEEEEEcccceeeecc---cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC
Confidence            9999999999999988877766   4899999999999999999999999999999999999888887778899999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      .+++++++-.+...              ++.... +.....+.-|.+-|.++.|.+-|+++++.+.|..+..|+.+
T Consensus       603 ~~dWlavGMens~v--------------evlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP  663 (705)
T KOG0639|consen  603 TGDWLAVGMENSNV--------------EVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  663 (705)
T ss_pred             CccceeeecccCcE--------------EEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence            99999886332221              111111 11122345688899999999999999999999999999865

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.7e-23  Score=159.41  Aligned_cols=201  Identities=20%  Similarity=0.314  Sum_probs=152.5

Q ss_pred             eeeecCCceeEEEEccCCC--EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            5 LMKGHERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~--~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .+..|.+.|+++.|.+...  .|++|+.||.|.+|+...=+++.++++|.++|+.++.+|.+++-++.+.|+++++||+-
T Consensus        78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            4567899999999998765  89999999999999998889999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      +|+.-+..........+.|.+. +.+++...+..       .++.+..      ......+ ..+.++.++.|- ++..+
T Consensus       158 ~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i-------~i~q~d~------A~v~~~i-~~~~r~l~~~~l-~~~~L  222 (362)
T KOG0294|consen  158 RGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKI-------DIYQLDN------ASVFREI-ENPKRILCATFL-DGSEL  222 (362)
T ss_pred             cCccceeeccCCcceeeEEcCCCCEEEEEeccEE-------EEEeccc------HhHhhhh-hccccceeeeec-CCceE
Confidence            9988777766555555778764 44555544321       1111100      0000000 011223333332 35689


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE--cCCCCeEEEEeCCCeEEEeecCCc
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~--s~~~~~l~s~s~dg~i~iwd~~~~  223 (326)
                      ++|++|+.|++||..+..+...+   .+|...|..+.+  .|++.+|+|+|.||.|++||++..
T Consensus       223 ~vG~d~~~i~~~D~ds~~~~~~~---~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  223 LVGGDNEWISLKDTDSDTPLTEF---LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEecCCceEEEeccCCCccceee---ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99999999999999886665544   589999999873  467889999999999999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.9e-22  Score=171.13  Aligned_cols=235  Identities=20%  Similarity=0.323  Sum_probs=184.5

Q ss_pred             EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~   94 (326)
                      -++|+ ..+.|+.| ....|++|+..++.....+.-+...|+++.|+++|.+|+.|-.+|.|.+||..+.+.+.      
T Consensus       182 lldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~------  253 (484)
T KOG0305|consen  182 LLDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR------  253 (484)
T ss_pred             Hhhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc------
Confidence            45777 34556555 44689999999998766666668899999999999999999999999999987654322      


Q ss_pred             CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-CccceeEEEEecCCcEEEEeeCCCcEEEE
Q 020461           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIW  173 (326)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~i~~w  173 (326)
                                                                    .+.+ |...|.+++|+  +..+.+|+.|+.|..+
T Consensus       254 ----------------------------------------------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~  285 (484)
T KOG0305|consen  254 ----------------------------------------------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNH  285 (484)
T ss_pred             ----------------------------------------------cccCCcCceeEEEecc--CceEEEecCCCcEEEE
Confidence                                                          1223 77888899998  5678999999999999


Q ss_pred             ECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecC
Q 020461          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      |++..+....  ...+|...|+.+.|++|+.++|+|+.|+.+.|||....++...+. +...+.+++|+|....+++.||
T Consensus       286 dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG  363 (484)
T KOG0305|consen  286 DVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG  363 (484)
T ss_pred             EEecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence            9998766554  246899999999999999999999999999999998777777764 5678999999999887666544


Q ss_pred             CCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee--cCCCcEEEeecCC
Q 020461          253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG--GEDGYVRLHHFDP  319 (326)
Q Consensus       253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~--s~Dg~i~l~~~~~  319 (326)
                      -..           ...+++|+...+..+..+. -.+.|.+|.|++..+-|+++  -.++.|+||.+..
T Consensus       364 Gs~-----------D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  364 GSA-----------DRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             CCc-----------ccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence            211           1246778877776665543 34689999999988665543  4478999999965

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=3.7e-23  Score=168.36  Aligned_cols=200  Identities=17%  Similarity=0.305  Sum_probs=158.2

Q ss_pred             eeeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCC-------eeeeccCcccceEEEEEcCC-CCeEEEEeCCC
Q 020461            4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQ   74 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~-------~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~   74 (326)
                      +.|+||++.-+.++|++... +|++++.|++|++||+....       ....+.+|...|.-++|++- ...|++++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            58999999778999999765 79999999999999986432       24567899999999999984 45789999999


Q ss_pred             cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      .+.|||.++++.                                                  ++....++|.+.|++++|
T Consensus       251 ~L~iwD~R~~~~--------------------------------------------------~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  251 KLMIWDTRSNTS--------------------------------------------------KPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             eEEEEEcCCCCC--------------------------------------------------CCcccccccCCceeEEEe
Confidence            999999975311                                                  122234678899999999


Q ss_pred             ecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEE----
Q 020461          155 GPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKT----  228 (326)
Q Consensus       155 ~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~----  228 (326)
                      +|.+. .|||||.|++|++||++.-+.  .+....+|...|..|.|||. ...|++++.|+.+.+||+..-...+.    
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            99765 678999999999999986433  23334689999999999997 45688899999999999865332221    


Q ss_pred             --------Eee---ccceEEEEeCCCCCeeEEecCCCc
Q 020461          229 --------YVT---ERPVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       229 --------~~~---~~~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                              |.+   ...|+...|+|....++++..+|.
T Consensus       359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence                    222   346888889999999998877774

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=9.4e-23  Score=173.94  Aligned_cols=239  Identities=22%  Similarity=0.352  Sum_probs=187.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee--eeccCcccceEE-EEEcC-CCCeEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWC-CDVSR-DSMTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~--~~~~~h~~~V~~-~~~~~-~~~~l~s~~~d~~i~~w   79 (326)
                      ..+.||+..|..+++.+ +-.++++|.|+++++|+-..++.+  ..+.+|.+.|.+ +++-+ ++-.+++|+.|.+|.+|
T Consensus         8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~   86 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF   86 (745)
T ss_pred             EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence            57899999998888665 446889999999999987666543  457788888876 77765 44469999999999998


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      ...+..                                                    +...++||++.|.++....++.
T Consensus        87 ~~~~~~----------------------------------------------------P~~~LkgH~snVC~ls~~~~~~  114 (745)
T KOG0301|consen   87 KLSQAE----------------------------------------------------PLYTLKGHKSNVCSLSIGEDGT  114 (745)
T ss_pred             ecCCCC----------------------------------------------------chhhhhccccceeeeecCCcCc
Confidence            875433                                                    3445678888888887766665


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEE
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  238 (326)
                       +++||+|.++++|-...  +...   ..+|+..|.++..-|++ .++|||.|.+||+|.-  +++++++. |...++.+
T Consensus       115 -~iSgSWD~TakvW~~~~--l~~~---l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL  185 (745)
T KOG0301|consen  115 -LISGSWDSTAKVWRIGE--LVYS---LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGL  185 (745)
T ss_pred             -eEecccccceEEecchh--hhcc---cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhheeee
Confidence             99999999999998643  3333   46899999999999988 8999999999999986  56666664 55678999


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      ++-++. +++.+ ++|+             .+++|+. .++.+..+.||+.-|.+++..+++..++|+++|+++|||.-+
T Consensus       186 ~vl~~~-~flSc-sNDg-------------~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  186 AVLDDS-HFLSC-SNDG-------------SIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEecCC-CeEee-cCCc-------------eEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            988764 33443 3444             3566665 456667789999999999988889999999999999999987


Q ss_pred             CC
Q 020461          319 PD  320 (326)
Q Consensus       319 ~~  320 (326)
                      .-
T Consensus       250 e~  251 (745)
T KOG0301|consen  250 EC  251 (745)
T ss_pred             ce
Confidence            43

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.9e-23  Score=159.42  Aligned_cols=221  Identities=21%  Similarity=0.271  Sum_probs=155.8

Q ss_pred             eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        45 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (326)
                      +..+++|.+.|++++|+.||++|+|++.|++|++|+++.-++..   +    +++.                        
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e---H----r~~R------------------------  127 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE---H----RCIR------------------------  127 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh---h----hHhh------------------------
Confidence            34678999999999999999999999999999999987632210   0    0000                        


Q ss_pred             eeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEEeeCCCcEEEEECCCC---cccccc------ccccCcceee
Q 020461          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETG---KLLKES------DKETGHKKTI  194 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~---~~~~~~------~~~~~h~~~v  194 (326)
                                    ...--+|   .+.++|.|+.+- ++.+-...++++|.+...   ......      ....-|+..+
T Consensus       128 --------------~nve~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~  190 (420)
T KOG2096|consen  128 --------------QNVEYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDI  190 (420)
T ss_pred             --------------ccccCCC---ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccce
Confidence                          0000112   345778888764 455566778889876432   211111      1123467778


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee
Q 020461          195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (326)
Q Consensus       195 ~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (326)
                      ..+-...++.++++++.|..|.+|+++ |+.+..+.... .-.-.+.||+|..++++|-.....+         +++.+-
T Consensus       191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkV---------wE~~f~  260 (420)
T KOG2096|consen  191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKV---------WEPIFT  260 (420)
T ss_pred             EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceE---------EEEEec
Confidence            888888999999999999999999999 88888876543 3335678999999988775443222         222222


Q ss_pred             cccc---eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461          274 DKIL---QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       274 ~~~~---~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~  323 (326)
                      ..-+   ...+-.++||++.|..++|||++..++|.|.||++|||+.|-.|..
T Consensus       261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            2111   1223357899999999999999999999999999999999988864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=5.3e-23  Score=163.88  Aligned_cols=211  Identities=20%  Similarity=0.354  Sum_probs=160.5

Q ss_pred             eeecCCceeEEEEccCC--CEEEeecCCCCeEEEecCC----------------CCeeeeccCcccceEEEEEcCCC-Ce
Q 020461            6 MKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADN----------------GERLGTYRGHNGAVWCCDVSRDS-MT   66 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~--~~l~s~~~d~~v~iw~~~~----------------~~~~~~~~~h~~~V~~~~~~~~~-~~   66 (326)
                      ..+|.+.++.+.-++-+  .+.++=+..|.|.||++..                .+.+.++.+|.+.=++|+|||-. ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34577788888777755  4677777899999998742                24567788999888999999932 24


Q ss_pred             EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc
Q 020461           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (326)
Q Consensus        67 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (326)
                      |+||.--+.|++|...++.=.    .                                   .          ..-+.+|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~----v-----------------------------------d----------~~Pf~gH~  257 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWK----V-----------------------------------D----------QRPFTGHT  257 (440)
T ss_pred             cccCccccceEeeeeccCcee----e-----------------------------------c----------Cccccccc
Confidence            778888888999987764210    0                                   0          00134588


Q ss_pred             cceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461          147 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (326)
Q Consensus       147 ~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (326)
                      ..|-.+.|||.. ..|++||.||+|+|||++.+..-..+.. ..|...|..+.|+.+-.+||+|+.||+++|||+|+.+.
T Consensus       258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS  336 (440)
T ss_pred             cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC
Confidence            889999999976 4889999999999999998844333222 57999999999999988999999999999999986432


Q ss_pred             EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-CceEE
Q 020461          226 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-GKSFS  304 (326)
Q Consensus       226 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~la  304 (326)
                      -                                                    +++..++.|..+|++|.|+|. ...||
T Consensus       337 ~----------------------------------------------------~pVA~fk~Hk~pItsieW~p~e~s~ia  364 (440)
T KOG0302|consen  337 G----------------------------------------------------QPVATFKYHKAPITSIEWHPHEDSVIA  364 (440)
T ss_pred             C----------------------------------------------------CcceeEEeccCCeeEEEeccccCceEE
Confidence            1                                                    112334568899999999985 45688


Q ss_pred             eecCCCcEEEeecC
Q 020461          305 SGGEDGYVRLHHFD  318 (326)
Q Consensus       305 t~s~Dg~i~l~~~~  318 (326)
                      +++.|.+|.||++-
T Consensus       365 asg~D~QitiWDls  378 (440)
T KOG0302|consen  365 ASGEDNQITIWDLS  378 (440)
T ss_pred             eccCCCcEEEEEee
Confidence            89999999999863

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=5e-21  Score=158.08  Aligned_cols=286  Identities=19%  Similarity=0.279  Sum_probs=199.4

Q ss_pred             ecCCceeEEEEccC--CCEEEe--ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            8 GHERPLTYLKYNKD--GDLLFS--CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         8 ~h~~~i~~~~~s~~--~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+..|.|++||+.  |.+|..  -+.++.+.+||...+......+.-+..|....|+|.+..+......+.+.+|+.+.
T Consensus       152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~  231 (626)
T KOG2106|consen  152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG  231 (626)
T ss_pred             cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence            35567999999974  555554  45678889999999988888888888999999999765554445557899999988


Q ss_pred             CcEEEEEe-cC----CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           84 GAQLFTFN-FD----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        84 ~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      +....... ++    .-+.++.|.+++.++..-++..+.+      |..      ...........|++.|.++..-.+|
T Consensus       232 ~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~I------w~~------~~~~~~k~~~aH~ggv~~L~~lr~G  299 (626)
T KOG2106|consen  232 GSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILI------WSK------GTNRISKQVHAHDGGVFSLCMLRDG  299 (626)
T ss_pred             CceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEE------EeC------CCceEEeEeeecCCceEEEEEecCc
Confidence            76654332 11    2345566766666655444433333      222      1122333334899999999887776


Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccc------------c--------------------------ccCcceeeEEEEEc
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESD------------K--------------------------ETGHKKTITSLAKA  200 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~------------~--------------------------~~~h~~~v~~v~~s  200 (326)
                      . |++|+.|..|..||-+-.+ +++..            .                          ..+|......++..
T Consensus       300 t-llSGgKDRki~~Wd~~y~k-~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h  377 (626)
T KOG2106|consen  300 T-LLSGGKDRKIILWDDNYRK-LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH  377 (626)
T ss_pred             c-EeecCccceEEeccccccc-cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC
Confidence            5 5569999999999943211 11110            0                          02577788889999


Q ss_pred             CCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee
Q 020461          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (326)
                      |+..+++|++.|+++++|+  ..+++-+...+.+..++.|+|.+ .++++...+..  ..            .+..++..
T Consensus       378 ps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w--~V------------~d~e~~~l  440 (626)
T KOG2106|consen  378 PSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRW--FV------------LDTETQDL  440 (626)
T ss_pred             CChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceE--EE------------Eeccccee
Confidence            9999999999999999999  55666666667889999999998 55554433221  11            12222222


Q ss_pred             eccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCceeee
Q 020461          281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK  325 (326)
Q Consensus       281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~~~  325 (326)
                      +..-. -.+++++|+|+|+|.+||.||.|+.|.|+.++.+.+-++
T Consensus       441 v~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  441 VTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             EEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence            22112 268999999999999999999999999999998876553

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=3.9e-22  Score=170.20  Aligned_cols=300  Identities=18%  Similarity=0.279  Sum_probs=207.1

Q ss_pred             eeeeecCCceeEEEEccCCC---EEEeecCCCCeEEEecCCCC------------------------ee-------eecc
Q 020461            4 ILMKGHERPLTYLKYNKDGD---LLFSCAKDHTPTVWFADNGE------------------------RL-------GTYR   49 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~---~l~s~~~d~~v~iw~~~~~~------------------------~~-------~~~~   49 (326)
                      ..|+||.+-|..++|...+.   +|+|+|+|..||||.+.-+.                        .+       ..+.
T Consensus       185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~  264 (764)
T KOG1063|consen  185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM  264 (764)
T ss_pred             EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence            56899999999999997544   89999999999999764222                        01       1135


Q ss_pred             CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE--ec---C---CCcceeeeecCCeEEEEEcCccceecee
Q 020461           50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF--NF---D---SPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        50 ~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      ||...|+++.|+|.+..|+++|.|+++.+|...+..-+..-  ..   .   ...-...|.++..++++.+.     .+.
T Consensus       265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~-----~Gg  339 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR-----TGG  339 (764)
T ss_pred             CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc-----cCc
Confidence            99999999999999999999999999999988765433222  11   1   11223345555544333221     122


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECC-CCccccccccccCcceeeEEEEEc
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKA  200 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~s  200 (326)
                      .+.|.. .+.  ..-.....+.||...|..++|+|.|.+|++.|.|.+=|++-.- ......++....-|...++|+++-
T Consensus       340 ~hlWkt-~d~--~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  340 FHLWKT-KDK--TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             EEEEec-cCc--cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            333331 110  0012233567999999999999999999999999999998754 222234555556789999999998


Q ss_pred             CCCCeEEEEeCCCeEEEeecCC-------------------------------------------cce----EEE-----
Q 020461          201 ADGSHFLTGSLDKSAKLWDART-------------------------------------------LEL----IKT-----  228 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~-------------------------------------------~~~----~~~-----  228 (326)
                      +....+++|.....+|+++.-.                                           +..    ..+     
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            8667899999999999985310                                           000    000     


Q ss_pred             -------------------------EeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461          229 -------------------------YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (326)
Q Consensus       229 -------------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (326)
                                               +.+...+.+++.+|.++.++.+-.....         .--.+.+|+...-...+.
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~---------ehAvI~lw~t~~W~~~~~  567 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK---------EHAVIRLWNTANWLQVQE  567 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc---------cceEEEEEeccchhhhhe
Confidence                                     0012235677888877766654332211         112467787776666667


Q ss_pred             ccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +.+|+=+|+.++|||||++|++.|.|.++.||....+
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~  604 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED  604 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence            8899999999999999999999999999999987554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=4.2e-23  Score=172.29  Aligned_cols=259  Identities=20%  Similarity=0.324  Sum_probs=182.5

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC--------CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcE
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA   76 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~--------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i   76 (326)
                      +++.|.+.|..++|+|....|++|+.||++++|++..        -+.+.+|++|.++|.|+++.++++.+++|+-||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            6788999999999999999999999999999999932        25688999999999999999999999999999999


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      +.|++....-.                .+.                      .    ........+.||...+..+++|+
T Consensus       369 ~~w~~p~n~dp----------------~ds----------------------~----dp~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  369 RCWNLPPNQDP----------------DDS----------------------Y----DPSVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             eeeccCCCCCc----------------ccc----------------------c----Ccchhccceeccccceeeeeecc
Confidence            99987521100                000                      0    00112234678999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecCCcceEEEEee----
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVT----  231 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~----  231 (326)
                      ....|++++.||++++|+...... .++.....| +..+++++-... ...++...-+.--+.++.....+..+..    
T Consensus       407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~  484 (577)
T KOG0642|consen  407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP  484 (577)
T ss_pred             cccceeeecCCceEEeeccCCcCc-cccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence            999999999999999999876554 222221122 233455443322 1222222223333344443333333221    


Q ss_pred             ----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461          232 ----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG  307 (326)
Q Consensus       232 ----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s  307 (326)
                          ...++-+..+|..+..+.+. ++             ..+++++..++..++....|...++++++.|+|.+|++|+
T Consensus       485 ~~~~~~~in~vVs~~~~~~~~~~h-ed-------------~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s  550 (577)
T KOG0642|consen  485 GPRRYPQINKVVSHPTADITFTAH-ED-------------RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS  550 (577)
T ss_pred             cccccCccceEEecCCCCeeEecc-cC-------------CceecccccccccchheeeccceecceeecCCCceEEeec
Confidence                12356677777765554432 22             1356777777888888889999999999999999999999


Q ss_pred             CCCcEEEeecCCCc
Q 020461          308 EDGYVRLHHFDPDY  321 (326)
Q Consensus       308 ~Dg~i~l~~~~~~~  321 (326)
                      .|+.+++|+++...
T Consensus       551 ~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  551 HDGSVRLWKLDVKT  564 (577)
T ss_pred             CCceeehhhccchh
Confidence            99999999997543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.1e-20  Score=156.56  Aligned_cols=266  Identities=17%  Similarity=0.145  Sum_probs=176.5

Q ss_pred             eeecCCceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCcEEEEEccC
Q 020461            6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVET   83 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~i~~wd~~~   83 (326)
                      +.+|. .+.+++|+|+++.+ ++++.++.+++||..+++.+..+..+.. +..++|+|+++.++++ +.|+.+++||+++
T Consensus        27 ~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        27 FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            34343 46789999999976 5677899999999999988877766544 4678899999877554 5689999999998


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-  162 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-  162 (326)
                      ++.+..+........+.+.+++..+++......    ....+..      ..+....... .......+.|+|+++.++ 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~----~~~~~d~------~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  173 (300)
T TIGR03866       105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN----MAHFIDT------KTYEIVDNVL-VDQRPRFAEFTADGKELWV  173 (300)
T ss_pred             CeEEeEeeCCCCcceEEECCCCCEEEEEecCCC----eEEEEeC------CCCeEEEEEE-cCCCccEEEECCCCCEEEE
Confidence            877766654444566778877766555432110    1111111      1112222111 123456789999999775 


Q ss_pred             EeeCCCcEEEEECCCCcccccccccc--Cc--ceeeEEEEEcCCCCeEEE-EeCCCeEEEeecCCcceEEEEeeccceEE
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKET--GH--KKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNA  237 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~--~h--~~~v~~v~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  237 (326)
                      ++..++.|++||+++++....+....  .+  ......++++|++.+++. .+.++.+.+||+++++.+........+.+
T Consensus       174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~  253 (300)
T TIGR03866       174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQ  253 (300)
T ss_pred             EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcce
Confidence            55569999999999887655432110  01  112356889999998554 45567899999999888776665667889


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  298 (326)
                      ++|+|++..++++.+.++             .+.+|+...++.+..+... ...+.++|+|
T Consensus       254 ~~~~~~g~~l~~~~~~~~-------------~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSN-------------DVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEECCCCCEEEEEcCCCC-------------eEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            999999998887654333             2344555444444444433 4458888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=7.3e-21  Score=157.12  Aligned_cols=269  Identities=19%  Similarity=0.308  Sum_probs=192.5

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      +.|.|++|.++|+ +++|.++|.|.||+..+....+...+|.+.|.++..-.+|. |+||+.|+.|..||-.- +.+...
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y-~k~r~~  323 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNY-RKLRET  323 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccc-cccccc
Confidence            5689999999999 66899999999999877666666669999999999888886 55699999999999322 222222


Q ss_pred             ecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           91 NFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        91 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      +.+   ++++.+.-..++ +.+..+.. ..+...++            ..-.....+|.....-++.+|....++|++.|
T Consensus       324 elPe~~G~iRtv~e~~~d-i~vGTtrN-~iL~Gt~~------------~~f~~~v~gh~delwgla~hps~~q~~T~gqd  389 (626)
T KOG2106|consen  324 ELPEQFGPIRTVAEGKGD-ILVGTTRN-FILQGTLE------------NGFTLTVQGHGDELWGLATHPSKNQLLTCGQD  389 (626)
T ss_pred             cCchhcCCeeEEecCCCc-EEEeeccc-eEEEeeec------------CCceEEEEecccceeeEEcCCChhheeeccCc
Confidence            222   223322222122 22222211 11111110            11233445777788889999999999999999


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCee
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV  247 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~  247 (326)
                      +.+++|+  ..+..-+..    -..++.|++|+|.| .+|.|+..|...+.|.++...+.......+++++.++|+|..+
T Consensus       390 k~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  390 KHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL  462 (626)
T ss_pred             ceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEE
Confidence            9999999  333332221    24678899999999 9999999999999999998887777667899999999999999


Q ss_pred             EEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      +++..+....++..+.....+          ..++...+  .+|+.+.||+|+++|.+-|-|=.|-.|
T Consensus       463 Avgs~d~~iyiy~Vs~~g~~y----------~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  463 AVGSHDNHIYIYRVSANGRKY----------SRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             EEecCCCeEEEEEECCCCcEE----------EEeeeecC--ceeEEeeecCCCceEEeccCceEEEEE
Confidence            887665554444333222111          22333444  799999999999999999999999999

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=5.7e-22  Score=170.03  Aligned_cols=304  Identities=15%  Similarity=0.211  Sum_probs=186.8

Q ss_pred             eeeecCCceeEEEEccCCCEEEeec--CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe--CCCcEEEEE
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS--ADQTAKLWN   80 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~--~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~--~d~~i~~wd   80 (326)
                      ++..|.++++|++||++|+|+|+|-  -.-.+++|+++....+.+|..|.-.|.|++|+|.++++++.|  .|..|.+||
T Consensus        73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~d  152 (1080)
T KOG1408|consen   73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVND  152 (1080)
T ss_pred             eecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhh
Confidence            4556778999999999999999965  677899999999999999999999999999999999999877  467778887


Q ss_pred             ccCCcEEEEEecCCCcceeeeecC--------------------------------------------------------
Q 020461           81 VETGAQLFTFNFDSPARSVDFAVG--------------------------------------------------------  104 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------  104 (326)
                      .+.+.....-+....+..+.|+.+                                                        
T Consensus       153 Wr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAe  232 (1080)
T KOG1408|consen  153 WRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAE  232 (1080)
T ss_pred             hhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCccccc
Confidence            542211000000000000000000                                                        


Q ss_pred             CeEEEEEc--------------------------------------Cccceecee--ee-eeeeccCCCCCC----C-ce
Q 020461          105 DKLAVITT--------------------------------------DPFMELNSA--IH-VKRIARDPADQG----G-ES  138 (326)
Q Consensus       105 ~~~~~~~~--------------------------------------~~~~~~~~~--~~-~~~~~~~~~~~~----~-~~  138 (326)
                      ..+++...                                      +....+...  ++ +..+.+......    + +.
T Consensus       233 stfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~  312 (1080)
T KOG1408|consen  233 STFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQP  312 (1080)
T ss_pred             ceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccc
Confidence            00000000                                      000000000  00 000000000000    0 00


Q ss_pred             EEEeccCcc----ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-----------CC
Q 020461          139 VLILKGPQG----RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-----------DG  203 (326)
Q Consensus       139 ~~~~~~~~~----~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-----------~~  203 (326)
                      -....+...    -...+.|+|....+.+..+|..+.+||++.-+.+.......-|+..|..+..-|           -.
T Consensus       313 ~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~  392 (1080)
T KOG1408|consen  313 EPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR  392 (1080)
T ss_pred             cccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc
Confidence            000001111    123577899899999999999999999987666554444456888777775433           12


Q ss_pred             CeEEEEeCCCeEEEeecCCc---ceEEE----------E-------------------------eeccceEEEEeCCCCC
Q 020461          204 SHFLTGSLDKSAKLWDARTL---ELIKT----------Y-------------------------VTERPVNAVTMSPLLD  245 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~~---~~~~~----------~-------------------------~~~~~~~~~~~s~~~~  245 (326)
                      ..++|++.|++|++||+..+   ...+.          .                         ....-+.+++.+|++.
T Consensus       393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq  472 (1080)
T KOG1408|consen  393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ  472 (1080)
T ss_pred             cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence            25999999999999998752   11000          0                         0001267899999998


Q ss_pred             eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC-C--CCceEEeecCCCcEEEeecCCCce
Q 020461          246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN-P--DGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~--d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      +++.+.  .+.            .+++|+...-+....+..|.+.|.|+.|| |  ..++||++|.|.-|.++++-.+|.
T Consensus       473 hLAsGD--r~G------------nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  473 HLASGD--RGG------------NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             eecccC--ccC------------ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            887642  221            23444544444455567899999999998 4  357899999999999999988874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=2.9e-21  Score=164.97  Aligned_cols=287  Identities=18%  Similarity=0.264  Sum_probs=190.5

Q ss_pred             eeeeecCCceeEEEEccCCC---EEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGD---LLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~---~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~   78 (326)
                      +.+.||.++|+|+.|-|+.+   ++++|+.|+.|.+|.+...  .++..+.+|...+.|+.  .........+.|+++.+
T Consensus        48 t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~--a~~~~~~~~~ad~~v~v  125 (764)
T KOG1063|consen   48 TTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVV--ARSSVMTCKAADGTVSV  125 (764)
T ss_pred             EeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEE--eeeeEEEeeccCceEEE
Confidence            57899999999999999887   8999999999999998744  35667788777666653  22222222378999999


Q ss_pred             EEccCCcE--EEEEecCCC---cceeeeecCCe-EE-EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           79 WNVETGAQ--LFTFNFDSP---ARSVDFAVGDK-LA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        79 wd~~~~~~--~~~~~~~~~---~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      ||.+..+.  ...+.+...   ..++...++.+ ++ ++++....        -.+.... ..+-.....++||...|.+
T Consensus       126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~--------v~~~s~~-~d~f~~v~el~GH~DWIrs  196 (764)
T KOG1063|consen  126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFV--------VDLYSSS-ADSFARVAELEGHTDWIRS  196 (764)
T ss_pred             eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceE--------EEEeccC-CcceeEEEEeeccchhhhh
Confidence            99966662  222232211   12223333222 22 22222110        0111111 1123467788999999999


Q ss_pred             EEEecCCc---EEEEeeCCCcEEEEECCCCcccc---------------------cc-------ccccCcceeeEEEEEc
Q 020461          152 AVWGPLNR---TIISAGEDAIVRIWDTETGKLLK---------------------ES-------DKETGHKKTITSLAKA  200 (326)
Q Consensus       152 ~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~---------------------~~-------~~~~~h~~~v~~v~~s  200 (326)
                      ++|...+.   +++++|+|.+||||.+.-+....                     ++       ....||..-|.++.|+
T Consensus       197 l~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~  276 (764)
T KOG1063|consen  197 LAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH  276 (764)
T ss_pred             hhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc
Confidence            99987654   78999999999999764322000                     00       0124899999999999


Q ss_pred             CCCCeEEEEeCCCeEEEeecCCcc--eEEEEe---ec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEe
Q 020461          201 ADGSHFLTGSLDKSAKLWDARTLE--LIKTYV---TE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF  272 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~---~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (326)
                      |.+..|+++|.|.++.+|...+..  =+....   ..   .-..+..|+|+++.++.-+..++.              ++
T Consensus       277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~--------------hl  342 (764)
T KOG1063|consen  277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF--------------HL  342 (764)
T ss_pred             cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE--------------EE
Confidence            999999999999999999876541  111111   11   124566788888666655443321              22


Q ss_pred             eccc---ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          273 FDKI---LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       273 ~~~~---~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      |...   .-.....+.||.+.|.+|+|+|.|.+|.|.|.|.+-|||
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF  388 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF  388 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeee
Confidence            3211   112234578999999999999999999999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=3e-21  Score=147.43  Aligned_cols=206  Identities=20%  Similarity=0.312  Sum_probs=163.8

Q ss_pred             eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeee
Q 020461           47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR  126 (326)
Q Consensus        47 ~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (326)
                      .++||..+++.+.++.+|.+|++|+.|.+..+|-...|+                                         
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------------------------   43 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------------------------   43 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------------------------
Confidence            468999999999999999999999999999999754443                                         


Q ss_pred             eccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE
Q 020461          127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF  206 (326)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l  206 (326)
                                 .+-..+||.+.|.++..+-+.+.+++|+.|.++++||.++|+.+....    -..+|..+.|+++|.++
T Consensus        44 -----------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k----~~~~Vk~~~F~~~gn~~  108 (327)
T KOG0643|consen   44 -----------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK----TNSPVKRVDFSFGGNLI  108 (327)
T ss_pred             -----------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee----cCCeeEEEeeccCCcEE
Confidence                       344567999999999999999999999999999999999999887654    34679999999999987


Q ss_pred             EEEeC-----CCeEEEeecC-------CcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee
Q 020461          207 LTGSL-----DKSAKLWDAR-------TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (326)
Q Consensus       207 ~s~s~-----dg~i~iwd~~-------~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (326)
                      +....     -+.|.++|++       +.+++..+. ++..+..+.|.|.++.++.+..++  .+..+|.+.+.      
T Consensus       109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G--~is~~da~~g~------  180 (327)
T KOG0643|consen  109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG--SISIYDARTGK------  180 (327)
T ss_pred             EEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC--cEEEEEcccCc------
Confidence            77654     3579999998       456566654 456788999999888777654333  23334433322      


Q ss_pred             cccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          274 DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                           +.+.....|...|++|.|+||..+|+|+|.|.+-++|+++.=.
T Consensus       181 -----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~  223 (327)
T KOG0643|consen  181 -----ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE  223 (327)
T ss_pred             -----eeeechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence                 2233345688899999999999999999999999999887543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=3.6e-22  Score=155.53  Aligned_cols=225  Identities=19%  Similarity=0.255  Sum_probs=165.5

Q ss_pred             eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeee
Q 020461           47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR  126 (326)
Q Consensus        47 ~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (326)
                      .+..|.+++.+.+|++||.++++||.|..||+.|++..-...  .                                ...
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~--------------------------------~~e  152 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--K--------------------------------PKE  152 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--c--------------------------------hhh
Confidence            456899999999999999999999999999999987431110  0                                000


Q ss_pred             eccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE
Q 020461          127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF  206 (326)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l  206 (326)
                      +......+.-..++++-.|...|+++.|+|....|++|+.|++|+++|...-...+.+.. .....+|.++.|+|.|.+|
T Consensus       153 m~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-~qd~~~vrsiSfHPsGefl  231 (430)
T KOG0640|consen  153 MISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-FQDTEPVRSISFHPSGEFL  231 (430)
T ss_pred             hccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH-hhccceeeeEeecCCCceE
Confidence            000000111245677888999999999999999999999999999999864322222111 1234689999999999999


Q ss_pred             EEEeCCCeEEEeecCCcceEEEEe----eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461          207 LTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG  282 (326)
Q Consensus       207 ~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  282 (326)
                      +.|..-.++++||+.+.+|...-.    +...++++-+++.++..+.+ +.|+             .+++|+......+.
T Consensus       232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa-SkDG-------------~IklwDGVS~rCv~  297 (430)
T KOG0640|consen  232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTA-SKDG-------------AIKLWDGVSNRCVR  297 (430)
T ss_pred             EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEe-ccCC-------------cEEeeccccHHHHH
Confidence            999999999999999988866543    23468899999988766554 3443             35666655444433


Q ss_pred             ccc-ccC-cceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          283 GVK-GHF-GPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       283 ~~~-~h~-~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .+. .|. +.|.+..|..+|+|+.+.+.|..++||.+-..
T Consensus       298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            332 343 47999999999999999999999999987643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.5e-22  Score=150.01  Aligned_cols=211  Identities=21%  Similarity=0.319  Sum_probs=149.8

Q ss_pred             ceeeeecCCceeEEEEcc--CCCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcCC--CCeEEEEeCCCcE
Q 020461            3 PILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRD--SMTLITGSADQTA   76 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i   76 (326)
                      +..|+||.+++..++|..  -|.+||+|+-||.|.||.-.+++.  .++...|.+.|++++|.|.  |-.|+.++.||+|
T Consensus        49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v  128 (299)
T KOG1332|consen   49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV  128 (299)
T ss_pred             eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence            367999999999999986  799999999999999999888854  4556789999999999885  5689999999999


Q ss_pred             EEEEccCCc--EEEEE--ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461           77 KLWNVETGA--QLFTF--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (326)
Q Consensus        77 ~~wd~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (326)
                      .+.+.+...  ....+  .++..++++++.|...-                            +..+.  .+...     
T Consensus       129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~----------------------------g~~~~--~~~~~-----  173 (299)
T KOG1332|consen  129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP----------------------------GSLVD--QGPAA-----  173 (299)
T ss_pred             EEEEEcCCCCccchhhhhccccccceeeecCcCCC----------------------------ccccc--cCccc-----
Confidence            999886541  11111  12222333333321000                            00000  00000     


Q ss_pred             EEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC----CeEEEEeCCCeEEEeecCCc-----
Q 020461          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG----SHFLTGSLDKSAKLWDARTL-----  223 (326)
Q Consensus       153 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~----~~l~s~s~dg~i~iwd~~~~-----  223 (326)
                          .-+.|++||.|..|+||+...++...+.. +.+|..-|+.++|.|.-    .+++++|.||++.||-.+.-     
T Consensus       174 ----~~krlvSgGcDn~VkiW~~~~~~w~~e~~-l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk  248 (299)
T KOG1332|consen  174 ----KVKRLVSGGCDNLVKIWKFDSDSWKLERT-LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK  248 (299)
T ss_pred             ----ccceeeccCCccceeeeecCCcchhhhhh-hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence                01469999999999999998875443322 56899999999999863    47999999999999976521     


Q ss_pred             -ceEEEEeeccceEEEEeCCCCCeeEEecCCCc
Q 020461          224 -ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       224 -~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                       .++.+  .+..+..+.||..++.+.+++|+..
T Consensus       249 ~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNk  279 (299)
T KOG1332|consen  249 KTLLEE--FPDVVWRVSWSLSGNILAVSGGDNK  279 (299)
T ss_pred             cccccc--CCcceEEEEEeccccEEEEecCCcE
Confidence             11111  2346888999999999999887654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=9.3e-23  Score=161.73  Aligned_cols=242  Identities=20%  Similarity=0.324  Sum_probs=173.2

Q ss_pred             eeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceee
Q 020461           45 LGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (326)
Q Consensus        45 ~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (326)
                      +..+.+|...|.|++=+|.. ..++||+.||.|++||+.+.++...+.. .+.+.++.+.. +.++.++.+...      
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtv------  131 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTV------  131 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcce------
Confidence            44568999999999999876 6799999999999999999888877764 45777776665 444444444322      


Q ss_pred             eeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC
Q 020461          123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD  202 (326)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~  202 (326)
                      +.|.+.-       .+..++-+ .+.+..+..+..+..++|+|.  .|.|||...-.+++.+...   -..+.++.++|.
T Consensus       132 K~wk~~~-------~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG---~Dti~svkfNpv  198 (433)
T KOG0268|consen  132 KQWKIDG-------PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG---ADSISSVKFNPV  198 (433)
T ss_pred             eeeeccC-------Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC---CCceeEEecCCC
Confidence            2222111       12222211 123334444445667888875  4889998766666655432   246889999996


Q ss_pred             CC-eEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeee
Q 020461          203 GS-HFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI  281 (326)
Q Consensus       203 ~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  281 (326)
                      .. .|++|..|+.|.+||+++..+++++......|.++|+|.. ..++++.+|. .++.+|.|.           ...++
T Consensus       199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a~ED~-nlY~~DmR~-----------l~~p~  265 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAANEDH-NLYTYDMRN-----------LSRPL  265 (433)
T ss_pred             cchheeeeccCCceEEEecccCCccceeeeeccccceecCccc-cceeeccccc-cceehhhhh-----------hcccc
Confidence            44 5667779999999999999999999888889999999943 4445555543 344445432           34567


Q ss_pred             ccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          282 GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       282 ~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ...++|.+.|.+|+|||.|+-|++||.|.+||||....
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEEEeecCC
Confidence            77899999999999999999999999999999987753

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.3e-21  Score=143.95  Aligned_cols=194  Identities=19%  Similarity=0.272  Sum_probs=130.4

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe------------------------------------------
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------------------------------------------   44 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~------------------------------------------   44 (326)
                      +.|++.|+|.+|||.|++|++||+|.+|++...+...+                                          
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            35889999999999999999999999999875432211                                          


Q ss_pred             ----------eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCc
Q 020461           45 ----------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP  114 (326)
Q Consensus        45 ----------~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (326)
                                .+.+.+|++-|.++- +=++-.+++|+.|.+||+||++-+.++..+..+                     
T Consensus       166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~---------------------  223 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND---------------------  223 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCc---------------------
Confidence                      111234555554441 113445556666666666665443332211100                     


Q ss_pred             cceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceee
Q 020461          115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI  194 (326)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v  194 (326)
                                      ..+.+        -..+.|..++..|.|+.|++|-.|....+||++.++.+..+   ..|...|
T Consensus       224 ----------------~~~~g--------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f---~phsadi  276 (350)
T KOG0641|consen  224 ----------------FHDGG--------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF---HPHSADI  276 (350)
T ss_pred             ----------------ccCCC--------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee---CCCccce
Confidence                            00000        01356888999999999999999999999999988877654   4799999


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE------eeccceEEEEeCCCCCeeEEe
Q 020461          195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY------VTERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       195 ~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~s~~~~~~~~~  250 (326)
                      .++.|+|...++++++.|..|++-|++. .+.+++      .+...+--+-|+|..-.++.+
T Consensus       277 r~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~d~sfiss  337 (350)
T KOG0641|consen  277 RCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS  337 (350)
T ss_pred             eEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCccceeeec
Confidence            9999999999999999999999999873 222222      122344455677765444433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.3e-22  Score=162.73  Aligned_cols=191  Identities=25%  Similarity=0.423  Sum_probs=150.8

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecC---------CCCeeeeccCcccceEEEEEcCC--CCeEEEEeCC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSAD   73 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~---------~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d   73 (326)
                      ++.+|-.+|+|+.|+-||.+|+|||.||.|.+|.+.         +-+..+.|.+|+-+|+.+...+.  ..+++|+|.|
T Consensus       118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D  197 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED  197 (476)
T ss_pred             HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence            457899999999999999999999999999999653         23456788999999998877653  4589999999


Q ss_pred             CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      .++|+||+..+..+..+.++.+                                                     +.+++
T Consensus       198 ~t~k~wdlS~g~LLlti~fp~s-----------------------------------------------------i~av~  224 (476)
T KOG0646|consen  198 RTIKLWDLSLGVLLLTITFPSS-----------------------------------------------------IKAVA  224 (476)
T ss_pred             ceEEEEEeccceeeEEEecCCc-----------------------------------------------------ceeEE
Confidence            9999999999887766554433                                                     44556


Q ss_pred             EecCCcEEEEeeCCCcEEEEECCCCc--cc-----------cccccccCcce--eeEEEEEcCCCCeEEEEeCCCeEEEe
Q 020461          154 WGPLNRTIISAGEDAIVRIWDTETGK--LL-----------KESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLW  218 (326)
Q Consensus       154 ~~~~~~~l~s~~~d~~i~~wd~~~~~--~~-----------~~~~~~~~h~~--~v~~v~~s~~~~~l~s~s~dg~i~iw  218 (326)
                      .+|.+..++.|+.+|.|.+.++..-.  ..           ..+....||..  .|+|++++.||..|++|+.||.+++|
T Consensus       225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence            66666777778888877777664322  10           12333467887  99999999999999999999999999


Q ss_pred             ecCCcceEEEEe-eccceEEEEeCCCCCeeE
Q 020461          219 DARTLELIKTYV-TERPVNAVTMSPLLDHVV  248 (326)
Q Consensus       219 d~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~  248 (326)
                      |+.+.++++++. ...+|+.+.+.|.-...+
T Consensus       305 di~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  305 DIYSKQCIRTLQTSKGPVTNLQINPLERGII  335 (476)
T ss_pred             ecchHHHHHHHhhhccccceeEeecccccee
Confidence            999999999987 567888888866543333

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=4.5e-21  Score=149.22  Aligned_cols=233  Identities=18%  Similarity=0.256  Sum_probs=166.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ++.-.|.+++.+.+|.++ ..+++|+.||.|+++|+.+++.. .+-.|..+|.|+.+++....+++||+|++|++||...
T Consensus        48 ~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   48 KLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             hhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            445568999999999984 45889999999999999988754 4557999999999998878899999999999999875


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ......+..                                                     ...|.++..  .+..|+.
T Consensus       126 ~~~~~~~d~-----------------------------------------------------~kkVy~~~v--~g~~LvV  150 (323)
T KOG1036|consen  126 KVVVGTFDQ-----------------------------------------------------GKKVYCMDV--SGNRLVV  150 (323)
T ss_pred             ccccccccc-----------------------------------------------------CceEEEEec--cCCEEEE
Confidence            222111100                                                     012222222  2567889


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE----Ee---------
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT----YV---------  230 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~---------  230 (326)
                      |..|..+.+||+++-....+. ....-...+.++++-|++.=.+++|-||.|.+=.+...++.++    |.         
T Consensus       151 g~~~r~v~iyDLRn~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~  229 (323)
T KOG1036|consen  151 GTSDRKVLIYDLRNLDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT  229 (323)
T ss_pred             eecCceEEEEEcccccchhhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc
Confidence            999999999999875544322 2334567899999999888899999999987755443311111    11         


Q ss_pred             -eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC
Q 020461          231 -TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE  308 (326)
Q Consensus       231 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~  308 (326)
                       ...||++++|+|....++++|+++.              +..|+....+.+..+..-..-|-+++|+-||..||.++.
T Consensus       230 ~~~yPVNai~Fhp~~~tfaTgGsDG~--------------V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  230 EIIYPVNAIAFHPIHGTFATGGSDGI--------------VNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEEEeceeEeccccceEEecCCCce--------------EEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence             1247999999999776666555432              234554444444455544456999999999999999975

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=7.4e-22  Score=150.44  Aligned_cols=289  Identities=19%  Similarity=0.241  Sum_probs=191.0

Q ss_pred             CCc-eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461            1 MRP-ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (326)
Q Consensus         1 ~~~-~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~   78 (326)
                      |+| -+|++|.+.++++.|..++. |++|..-|.|.+|.+.+...+..++ .|...|+.+..-|+ ..|.+-+.|.++.+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            345 57889999999999998776 8899999999999999988888888 46678999887776 56889999999999


Q ss_pred             EEccCCcEEEEEecCCCcceeee-----ecCCe----EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe----ccC
Q 020461           79 WNVETGAQLFTFNFDSPARSVDF-----AVGDK----LAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL----KGP  145 (326)
Q Consensus        79 wd~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  145 (326)
                      |++..+.-+..-.  -..+++.|     .++.+    ......+...+    .+..+      ......+...    .+.
T Consensus        82 w~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde----~h~~D------~g~~tqv~i~dd~~~~K  149 (323)
T KOG0322|consen   82 WTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE----THKQD------GGDTTQVQIADDSERSK  149 (323)
T ss_pred             EEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccch----hhhhc------cCccceeEccCchhccc
Confidence            9997654332211  11111111     11111    00100000000    00000      0000011111    122


Q ss_pred             ccceeEEEEecC-C--cEEEEeeCCCcEEEEECCCCccccc-------cccccCcceeeEEEEEcCCCCeEEEEeCCCeE
Q 020461          146 QGRINRAVWGPL-N--RTIISAGEDAIVRIWDTETGKLLKE-------SDKETGHKKTITSLAKAADGSHFLTGSLDKSA  215 (326)
Q Consensus       146 ~~~i~~~~~~~~-~--~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i  215 (326)
                      .+.+.+..+..+ +  -.++.|.++|.+.+||+.++..+-.       ......|..+|+++.+.+.-..=++|+.+..+
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence            344555544332 2  2567888999999999988633221       12234689999999998876667889999999


Q ss_pred             EEeecCCc--ce-EEE-Eee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461          216 KLWDARTL--EL-IKT-YVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP  290 (326)
Q Consensus       216 ~iwd~~~~--~~-~~~-~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~  290 (326)
                      ..|.++-.  .+ ++. +.. ..-++.+.+.|+++.++++|. |        +     ++++|...+..++..++.|.+.
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW-D--------~-----RiRVyswrtl~pLAVLkyHsag  295 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW-D--------H-----RIRVYSWRTLNPLAVLKYHSAG  295 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc-C--------C-----cEEEEEeccCCchhhhhhhhcc
Confidence            99987632  22 111 111 234788899999887776653 3        2     2455566667778889999999


Q ss_pred             eeEEEECCCCceEEeecCCCcEEEeec
Q 020461          291 INALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       291 v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      |++++|+||...+|++|.|++|.||.+
T Consensus       296 vn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  296 VNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999985

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=8.5e-22  Score=162.61  Aligned_cols=237  Identities=16%  Similarity=0.195  Sum_probs=185.4

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      ...|......|||+.|++|+.-.++.|||+.....  ..++..-.....+++.+||.+..+++..||.|.|||+..-.  
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--  542 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--  542 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--
Confidence            35677888999999999999999999999986643  23343334467889999999999999999999999986432  


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                                                                        .+..++||...+.|+.++++|..|-|||-|
T Consensus       543 --------------------------------------------------~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  543 --------------------------------------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             --------------------------------------------------eeecccCCCCCceeEEecCCCceeecCCCc
Confidence                                                              234467888889999999999999999999


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCee
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV  247 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~  247 (326)
                      ++||.||+++++.+...    .....|.++.+.|++..++.|-.++.+-+-.....+..+-..++..|-++.|++.|.++
T Consensus       573 ntvRcWDlregrqlqqh----dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  573 NTVRCWDLREGRQLQQH----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             cceeehhhhhhhhhhhh----hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence            99999999988765432    34577999999999999999999999988887665554444567889999999999999


Q ss_pred             EEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +.+|.++-...+  ....   ...+|..          ...+.|.++.+|.|.++++|||-|....|+.+
T Consensus       649 vStGkDnlLnaw--rtPy---GasiFqs----------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 VSTGKDNLLNAW--RTPY---GASIFQS----------KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecCchhhhhhc--cCcc---ccceeec----------cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            888765532221  1111   1112221          12467999999999999999999998888654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=4.6e-21  Score=163.46  Aligned_cols=274  Identities=14%  Similarity=0.226  Sum_probs=194.1

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      .|..++|-|||..|+.+.. ..+.+||.++|....++++|...|+|++|+.||+.++||+.|+.|.+|+.+-. -+..+.
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeeec
Confidence            7899999999987776644 47899999999999999999999999999999999999999999999987532 233445


Q ss_pred             cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  171 (326)
                      +...+.+..|.|-+...+.+.-.      ...+|.....       .+.. ..-..++.+++|..+|++++.|-.||+|.
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLs------dFglWS~~qK-------~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIs  157 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLS------DFGLWSPEQK-------SVSK-HKSSSRIICCSWTNDGQYLALGMFNGTIS  157 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchh------hccccChhhh-------hHHh-hhhheeEEEeeecCCCcEEEEeccCceEE
Confidence            55556666666544333222111      1112211110       0000 01135688999999999999999999999


Q ss_pred             EEECCCCccccccccccCcceeeEEEEEcCCC-----CeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCe
Q 020461          172 IWDTETGKLLKESDKETGHKKTITSLAKAADG-----SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH  246 (326)
Q Consensus       172 ~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  246 (326)
                      +=+-. ++.-..+....|...+|.+++|+|..     ..++......++.++.+.....-+.-..+-...|+.+-++|+.
T Consensus       158 iRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy  236 (1081)
T KOG1538|consen  158 IRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEY  236 (1081)
T ss_pred             eecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcE
Confidence            87543 33322334444667899999999863     3588888888998888754332223333446778889999999


Q ss_pred             eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      ++++|.+....+.              ... +..++.+.....+|++++..|++++.+.|+.||+|--+++
T Consensus       237 ~LiGGsdk~L~~f--------------TR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  237 ILLGGSDKQLSLF--------------TRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEEccCCCceEEE--------------eec-CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            9888766543222              211 3334445556679999999999999999999999987765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=151.55  Aligned_cols=282  Identities=13%  Similarity=0.196  Sum_probs=185.8

Q ss_pred             CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEEEEEccCCcEEEEEec--C--CCc
Q 020461           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVETGAQLFTFNF--D--SPA   96 (326)
Q Consensus        23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~--~~~   96 (326)
                      ..+|++-++|+|++||..++..+..|++|.+.++.+.|..  ....+.+|+.||+||+||++.......+.+  .  .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3588888999999999999999999999999999999976  456899999999999999987655444433  2  234


Q ss_pred             ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEEC
Q 020461           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDT  175 (326)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~  175 (326)
                      .+++......+.+++++.. .......+|++......    .......|..-|+++.|+|.. ..|++|+.||.|.++|+
T Consensus       121 ~~ld~nck~~ii~~GtE~~-~s~A~v~lwDvR~~qq~----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELT-RSDASVVLWDVRSEQQL----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEeeccCcCCeEEeccccc-cCceEEEEEEeccccch----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            4444444556666554422 22333445555432210    122345788999999999976 58899999999999999


Q ss_pred             CCCccccccccccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecCCcceEEEEeeccc-----------eEEEE-eCC
Q 020461          176 ETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERP-----------VNAVT-MSP  242 (326)
Q Consensus       176 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~-~s~  242 (326)
                      +.-...-.+....-|...|.++.|..++ +.+.+-+...+..+|+++.+.+...+..+.-           -..+. .+|
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~  275 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP  275 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence            7543221122223466779999999887 4588899999999999988776554432200           00111 224


Q ss_pred             CCCee-EEecCCC-cc-eeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          243 LLDHV-VLGGGQD-AS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       243 ~~~~~-~~~~~~~-~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      ....+ .++++.. .. .+-+-|..         ......+...+.+ |...|+++.|...+.++.||++||.+.+|..+
T Consensus       276 ~~~~~~~l~g~~~n~~~~~~~~~~~---------s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  276 GDKDTCALAGTDSNKGTIFPLVDTS---------SGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             CCcceEEEeccccCceeEEEeeecc---------cccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            33333 3333211 11 11110100         0111223334455 77788999999899999999999999999954

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=1.6e-21  Score=155.44  Aligned_cols=205  Identities=20%  Similarity=0.297  Sum_probs=153.6

Q ss_pred             Cc-eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCCee---eeccCcccceEEEEEcCCC-CeEEEEeCCCc
Q 020461            2 RP-ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERL---GTYRGHNGAVWCCDVSRDS-MTLITGSADQT   75 (326)
Q Consensus         2 ~~-~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~---~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~   75 (326)
                      || -.+.+|...=+.++|||-. ..|++|..-+.|++|...+|...   .-|.+|+..|..|.|||.. ..|+|||-|++
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            55 4567888888999999942 34888888899999998888653   3567899999999999964 58999999999


Q ss_pred             EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      |+|||++.+...                                                  .....+.|.+-|+-+.|+
T Consensus       282 IrIWDiRs~~~~--------------------------------------------------~~~~~kAh~sDVNVISWn  311 (440)
T KOG0302|consen  282 IRIWDIRSGPKK--------------------------------------------------AAVSTKAHNSDVNVISWN  311 (440)
T ss_pred             EEEEEecCCCcc--------------------------------------------------ceeEeeccCCceeeEEcc
Confidence            999999865321                                                  111225677888999999


Q ss_pred             cCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcc----------
Q 020461          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLE----------  224 (326)
Q Consensus       156 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~----------  224 (326)
                      ..-.+|++|+.||+++|||+++.+.-..+....-|..+|+++.|+|. ...|++++.|.+|.+||+..-.          
T Consensus       312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~  391 (440)
T KOG0302|consen  312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAA  391 (440)
T ss_pred             CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccc
Confidence            88889999999999999999875543333334569999999999985 5678889999999999975311          


Q ss_pred             -eEEE------Ee--eccceEEEEeCCCCCeeEEecCCCcc
Q 020461          225 -LIKT------YV--TERPVNAVTMSPLLDHVVLGGGQDAS  256 (326)
Q Consensus       225 -~~~~------~~--~~~~~~~~~~s~~~~~~~~~~~~~~~  256 (326)
                       .+..      |.  ....+.-+.|+++...++++.+-++.
T Consensus       392 ~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  392 EGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             cchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence             0011      11  12345567788887777766555543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=3.8e-21  Score=154.75  Aligned_cols=275  Identities=21%  Similarity=0.336  Sum_probs=190.4

Q ss_pred             CCceeEEEEccCCC-EEEeecCCCCeEEEecCCCC---------eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461           10 ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGE---------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (326)
Q Consensus        10 ~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~---------~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w   79 (326)
                      ..++..+.|.+++. .|+||+.|..|+||-+..++         ....+..|+.+|+++.|+|+|+.|+||+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35789999999877 99999999999999765332         234677899999999999999999999999999999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      -... ..+.  ..+.   ..+.                              ..+.=.....+++|...|..++|+|++.
T Consensus        93 k~~~-~~~~--~~d~---e~~~------------------------------~ke~w~v~k~lr~h~~diydL~Ws~d~~  136 (434)
T KOG1009|consen   93 KQGD-VRIF--DADT---EADL------------------------------NKEKWVVKKVLRGHRDDIYDLAWSPDSN  136 (434)
T ss_pred             EecC-cCCc--cccc---hhhh------------------------------CccceEEEEEecccccchhhhhccCCCc
Confidence            7543 1000  0000   0000                              0000012345678999999999999999


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe---------
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---------  230 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------  230 (326)
                      ++++++.|.++++||+..|+.....   .+|..-+..++|+|-++++++=+.|...+.+.......++...         
T Consensus       137 ~l~s~s~dns~~l~Dv~~G~l~~~~---~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~  213 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHAGQLLAIL---DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF  213 (434)
T ss_pred             eeeeeeccceEEEEEeccceeEeec---cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence            9999999999999999999876644   4789999999999999999999999877666654332222111         


Q ss_pred             -----------e-c---cceEEEEeCCCCCeeEEecCC------C-cceeEeeccc------------------------
Q 020461          231 -----------T-E---RPVNAVTMSPLLDHVVLGGGQ------D-ASAVTTTDHR------------------------  264 (326)
Q Consensus       231 -----------~-~---~~~~~~~~s~~~~~~~~~~~~------~-~~~~~~~d~~------------------------  264 (326)
                                 + +   .-..-++|+|++..++..++-      - ....+.++..                        
T Consensus       214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV  293 (434)
T KOG1009|consen  214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV  293 (434)
T ss_pred             CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee
Confidence                       1 0   012356788888777654321      0 0001111110                        


Q ss_pred             -----C-------------------ceeeeEeecccceeeeccc-cccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          265 -----A-------------------GKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       265 -----~-------------------~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                           .                   .+..+++|+..+..++... .-|..+|++++||+||..|+..|.||...+--|++
T Consensus       294 y~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  294 YYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             EEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence                 0                   0112234444443333221 24778999999999999999999999999999988


Q ss_pred             Ccee
Q 020461          320 DYFN  323 (326)
Q Consensus       320 ~~~~  323 (326)
                      ..+-
T Consensus       374 ~elg  377 (434)
T KOG1009|consen  374 WELG  377 (434)
T ss_pred             hhcc
Confidence            8765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=6.8e-21  Score=160.31  Aligned_cols=254  Identities=23%  Similarity=0.327  Sum_probs=183.6

Q ss_pred             eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE--EE-cCccceeceee
Q 020461           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV--IT-TDPFMELNSAI  122 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~  122 (326)
                      ..+++|++.|.+|+..|.|.+|++|+.||+||+|.+.+|.++..++++..+.++.|.+...+.+  ++ ....+.++..+
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            3568999999999999999999999999999999999999999999999999999987654332  22 22222222111


Q ss_pred             e----e---ee-ec-------------cC-C--CCCCCceEEEeccCccceeEEEEecCCcEEEEeeC---CCcEEEEEC
Q 020461          123 H----V---KR-IA-------------RD-P--ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDT  175 (326)
Q Consensus       123 ~----~---~~-~~-------------~~-~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---d~~i~~wd~  175 (326)
                      .    .   .. +.             .+ .  ..+....+...-.|...|.++.|+..|.+|++..-   ...|.|.++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            1    0   00 00             00 0  00011112334457788999999999999987654   346888888


Q ss_pred             CCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeEEecCCC
Q 020461          176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       176 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      ..++....+..   ..+.+.++.|+|...+|+.++. ..|+|||+..++.++++... ..+..++++|.|+.+++++-..
T Consensus       554 SK~~sQ~PF~k---skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  554 SKRKSQSPFRK---SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             ccccccCchhh---cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence            76554433332   2456899999999999999997 47999999998888887544 5689999999999998875443


Q ss_pred             cceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      ...+.-.|             ..-++...++-|...|++|+|++.-.+||+|+.||++.||+
T Consensus       630 k~~WfDld-------------lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  630 KMCWFDLD-------------LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             eeEEEEcc-------------cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            32222111             11234556778999999999999999999999999999975

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.4e-21  Score=151.56  Aligned_cols=211  Identities=24%  Similarity=0.438  Sum_probs=160.5

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceee
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (326)
                      .+++.+.||...||-++.......+.+++.|.+.++|.++++.++..                                 
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---------------------------------  185 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---------------------------------  185 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---------------------------------
Confidence            35677889999999998766566899999999999999988766432                                 


Q ss_pred             eeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE------CCCC--------c---------
Q 020461          123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD------TETG--------K---------  179 (326)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd------~~~~--------~---------  179 (326)
                                         ..||.+.|+++.|++.+.++++++.|++-.||.      ..+.        +         
T Consensus       186 -------------------Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~  246 (481)
T KOG0300|consen  186 -------------------YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH  246 (481)
T ss_pred             -------------------ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc
Confidence                               357888899999999888999999999999985      1110        0         


Q ss_pred             -------------cc-cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCC
Q 020461          180 -------------LL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL  244 (326)
Q Consensus       180 -------------~~-~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~  244 (326)
                                   .+ ..+....+|...|.+..|-..|+.+++++.|.+..+||+++++.+..+. ++...+-++-+|..
T Consensus       247 ~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ  326 (481)
T KOG0300|consen  247 NRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ  326 (481)
T ss_pred             ccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc
Confidence                         00 0011235788999999999999999999999999999999999998875 44566677778876


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ..++.+ +.|.. +..||.|.           ....+..++||...|+++.|+.| ..+++||.|.+|++|++++
T Consensus       327 rLVvTs-SrDtT-FRLWDFRe-----------aI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  327 RLVVTS-SRDTT-FRLWDFRE-----------AIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             eEEEEe-ccCce-eEeccchh-----------hcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecc
Confidence            655544 33332 22333332           23446678999999999999864 4578899999999999875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.7e-21  Score=167.98  Aligned_cols=196  Identities=16%  Similarity=0.233  Sum_probs=156.8

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      +|.-..-++.+++|+-+|+++|.||.|-.|++-+..+......+++|.++|.++.|+|++++||+.+-||+|++||++++
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence            34445567899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .+...+..-.+...                                  .          .....+..++|+|++..++..
T Consensus       171 ~~~~tl~~v~k~n~----------------------------------~----------~~s~i~~~~aW~Pk~g~la~~  206 (933)
T KOG1274|consen  171 ILSKTLTGVDKDNE----------------------------------F----------ILSRICTRLAWHPKGGTLAVP  206 (933)
T ss_pred             hhhhhcccCCcccc----------------------------------c----------cccceeeeeeecCCCCeEEee
Confidence            65443321000000                                  0          002345678999999999999


Q ss_pred             eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  244 (326)
                      +.|+.|++|+....+....+... .+...++.++|+|+|.|||+++.||.|.+||.++.+.   ......|.+++|.|++
T Consensus       207 ~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  207 PVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             ccCCeEEEEccCCceeheeeccc-ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCC
Confidence            99999999999988776665543 3344499999999999999999999999999998332   2234578889999887


Q ss_pred             CeeE
Q 020461          245 DHVV  248 (326)
Q Consensus       245 ~~~~  248 (326)
                      +.+-
T Consensus       283 n~it  286 (933)
T KOG1274|consen  283 NAIT  286 (933)
T ss_pred             CeeE
Confidence            7543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-20  Score=155.91  Aligned_cols=220  Identities=14%  Similarity=0.209  Sum_probs=172.4

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~   93 (326)
                      .|++......++++|+..+.|+|||+....+.+.+++|+..|+++.+.-...++++++..|-|.+..+.++.....|..+
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~  162 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID  162 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence            45555556689999999999999999977788889999999999999988999999999999999988776543332211


Q ss_pred             CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEEeeCCCcEEE
Q 020461           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRI  172 (326)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~  172 (326)
                                                               +          ...+.-+.|+|..+. |.+++.+|+|.+
T Consensus       163 -----------------------------------------s----------gqsvRll~ys~skr~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  163 -----------------------------------------S----------GQSVRLLRYSPSKRFLLSIASDKGAVTL  191 (673)
T ss_pred             -----------------------------------------C----------CCeEEEeecccccceeeEeeccCCeEEE
Confidence                                                     0          112345667777664 558999999999


Q ss_pred             EECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEec
Q 020461          173 WDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  251 (326)
                      ||+.........  ...|..+...++|+|- ...|++.+.|..|.+||.++......+.-..+...++|+++|-.++++.
T Consensus       192 wDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~  269 (673)
T KOG4378|consen  192 WDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN  269 (673)
T ss_pred             EeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence            999876665543  3569999999999985 5568899999999999999999888888888999999999998777655


Q ss_pred             CCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      ..+.  +..+|.|.           ...++..+..|...|++++|-|.
T Consensus       270 s~G~--~i~YD~R~-----------~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  270 SKGE--LIAYDMRS-----------TKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             CCce--EEEEeccc-----------CCCCceEeeecccceeEEEeeec
Confidence            4432  33444443           24556778889999999999664

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=2.7e-20  Score=144.18  Aligned_cols=229  Identities=21%  Similarity=0.312  Sum_probs=163.3

Q ss_pred             cCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeee
Q 020461           49 RGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI  127 (326)
Q Consensus        49 ~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (326)
                      +-|.+.|+++.+.+ .++++++|+.||.|.+||++....-..-       .+  ..+ ..+                 .+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-------~l--i~k-~~c-----------------~v   92 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-------GL--IAK-HKC-----------------IV   92 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-------cc--eeh-eee-----------------ec
Confidence            46889999999977 6899999999999999999764321000       00  000 000                 00


Q ss_pred             ccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC---C
Q 020461          128 ARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD---G  203 (326)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~---~  203 (326)
                      ..+          .-.+|.-.|..+.|=|. ..+|.+++.|.++++||.++-+....+.    -++.|.+-++||=   .
T Consensus        93 ~~~----------h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~sH  158 (397)
T KOG4283|consen   93 AKQ----------HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAMSH  158 (397)
T ss_pred             ccc----------CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee----cCceeehhhcChhhhcc
Confidence            000          11356667788888774 4688899999999999998866554442    3456777777763   3


Q ss_pred             CeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc---ee
Q 020461          204 SHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---QE  279 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~  279 (326)
                      .++|+|..|-.|++.|+++|.+.+.+.. ...+.++.|+|..+.++.+|+-|+. +..||.|...-.....+.-.   ..
T Consensus       159 cLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p  237 (397)
T KOG4283|consen  159 CLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPP  237 (397)
T ss_pred             eEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCc
Confidence            4678888899999999999999888864 4579999999999999888877764 55677765432222323211   11


Q ss_pred             eeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          280 EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       280 ~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      .+..-..|.+.|+.++|+.|+.++++++.|..+|+|+...
T Consensus       238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            1223457999999999999999999999999999998764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=6.3e-21  Score=164.82  Aligned_cols=200  Identities=18%  Similarity=0.292  Sum_probs=155.3

Q ss_pred             eeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~   81 (326)
                      +++..|+-.+++++|++. .++|++||.||+|++||+....-+.++.+....|..+.|+| .+..|+++...|.+++||+
T Consensus       127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDl  206 (839)
T KOG0269|consen  127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDL  206 (839)
T ss_pred             hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeec
Confidence            467889999999999985 57899999999999999999999999999888999999998 4678999999999999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      +....                                                   +...+..|.++|.++.|+|++.+|
T Consensus       207 Rqp~r---------------------------------------------------~~~k~~AH~GpV~c~nwhPnr~~l  235 (839)
T KOG0269|consen  207 RQPDR---------------------------------------------------CEKKLTAHNGPVLCLNWHPNREWL  235 (839)
T ss_pred             cCchh---------------------------------------------------HHHHhhcccCceEEEeecCCCcee
Confidence            75321                                                   222345789999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-EEEEeC--CCeEEEeecCCcc-eEEEEe-eccceE
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSL--DKSAKLWDARTLE-LIKTYV-TERPVN  236 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~--dg~i~iwd~~~~~-~~~~~~-~~~~~~  236 (326)
                      ||||.|+.|+|||..+.+......  ..-..++..|.|-|+..+ |++++.  |-.|++||++..- +..++. +...+.
T Consensus       236 ATGGRDK~vkiWd~t~~~~~~~~t--InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt  313 (839)
T KOG0269|consen  236 ATGGRDKMVKIWDMTDSRAKPKHT--INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT  313 (839)
T ss_pred             eecCCCccEEEEeccCCCccceeE--EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence            999999999999998655432211  122467999999998665 555553  7889999998643 333332 334567


Q ss_pred             EEEeCCCCCeeEEecCCCcc
Q 020461          237 AVTMSPLLDHVVLGGGQDAS  256 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~~~~~~  256 (326)
                      .++|......++.+.+.|+.
T Consensus       314 ~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  314 GIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             ceeccCCCceeeEeecCccH
Confidence            78887655566666665554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=7.9e-20  Score=148.74  Aligned_cols=229  Identities=19%  Similarity=0.291  Sum_probs=165.7

Q ss_pred             CCEEEeecCCCCeEEEecCCCCe---------------------eeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEE
Q 020461           22 GDLLFSCAKDHTPTVWFADNGER---------------------LGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW   79 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~---------------------~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~w   79 (326)
                      |+++|.|.-|..|.|||+.=...                     -....+|+.+|..++|+..- +.|+|||.|.||++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            78999999999999998752111                     01124799999999987653 579999999999999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-  158 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  158 (326)
                      |+.++++..++                                                    ..|...|.++.|+|.. 
T Consensus       272 D~~~g~p~~s~----------------------------------------------------~~~~k~Vq~l~wh~~~p  299 (463)
T KOG0270|consen  272 DVDTGKPKSSI----------------------------------------------------THHGKKVQTLEWHPYEP  299 (463)
T ss_pred             EcCCCCcceeh----------------------------------------------------hhcCCceeEEEecCCCc
Confidence            99988764332                                                    3456778888999875 


Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCc-ceEEEEe-eccce
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL-ELIKTYV-TERPV  235 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~  235 (326)
                      .+|++|+.|++|.+.|.+.......   .-...+.|-.++|.+... .+++++.||+++-+|+|+. +++.++. +...|
T Consensus       300 ~~LLsGs~D~~V~l~D~R~~~~s~~---~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I  376 (463)
T KOG0270|consen  300 SVLLSGSYDGTVALKDCRDPSNSGK---EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI  376 (463)
T ss_pred             eEEEeccccceEEeeeccCccccCc---eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc
Confidence            5789999999999999885222111   112346788899988644 5778889999999999975 7888775 66789


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc--ceeeeccccccCcceeEEEECCCCce-EEeecCCCcE
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEIGGVKGHFGPINALAFNPDGKS-FSSGGEDGYV  312 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~v~~s~d~~~-lat~s~Dg~i  312 (326)
                      .++++++.-..++++++.+..             +++|+..  ....+..-.-.-+...|+++.|+-.+ +|.|+..+.+
T Consensus       377 Sgl~~n~~~p~~l~t~s~d~~-------------Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~  443 (463)
T KOG0270|consen  377 SGLSVNIQTPGLLSTASTDKV-------------VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL  443 (463)
T ss_pred             ceEEecCCCCcceeeccccce-------------EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence            999999988888777666542             2233221  12112111112245678888988764 8999999999


Q ss_pred             EEeecC
Q 020461          313 RLHHFD  318 (326)
Q Consensus       313 ~l~~~~  318 (326)
                      +||++-
T Consensus       444 ~vwd~~  449 (463)
T KOG0270|consen  444 RVWDIF  449 (463)
T ss_pred             EEeecc
Confidence            999864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2e-19  Score=140.04  Aligned_cols=215  Identities=18%  Similarity=0.339  Sum_probs=143.5

Q ss_pred             cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeec
Q 020461           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA  128 (326)
Q Consensus        49 ~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (326)
                      .+|..-|.++.|.+.|+++++|+.|++|++||.+.+....                                        
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W----------------------------------------   49 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW----------------------------------------   49 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence            4688899999999999999999999999999975432211                                        


Q ss_pred             cCCCCCCCceEEEeccCccceeEEEEe-c-CCcEEEEeeCCCcEEEEECCCCc------cccccccccCcceeeEEEEEc
Q 020461          129 RDPADQGGESVLILKGPQGRINRAVWG-P-LNRTIISAGEDAIVRIWDTETGK------LLKESDKETGHKKTITSLAKA  200 (326)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~~~~h~~~v~~v~~s  200 (326)
                              ......+.|.+.|..+.|- | .|+.+++++.|+++.||.-....      .-.........+..|+.+.|.
T Consensus        50 --------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~Fa  121 (361)
T KOG2445|consen   50 --------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFA  121 (361)
T ss_pred             --------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEec
Confidence                    1223456788888888883 3 57899999999999999752110      111112234557789999999


Q ss_pred             CC--CCeEEEEeCCCeEEEeecCCcceEE------EEe--------eccceEEEEeCCCC--CeeEEecCCC-cceeEee
Q 020461          201 AD--GSHFLTGSLDKSAKLWDARTLELIK------TYV--------TERPVNAVTMSPLL--DHVVLGGGQD-ASAVTTT  261 (326)
Q Consensus       201 ~~--~~~l~s~s~dg~i~iwd~~~~~~~~------~~~--------~~~~~~~~~~s~~~--~~~~~~~~~~-~~~~~~~  261 (326)
                      |.  |-.||+++.||++|||+.-..-.+.      ++.        ...+..|+.|+|.-  ...++.|..+ .-     
T Consensus       122 P~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~-----  196 (361)
T KOG2445|consen  122 PKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP-----  196 (361)
T ss_pred             chhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCc-----
Confidence            85  7789999999999999754322222      221        22356678887542  2233333322 10     


Q ss_pred             cccCceeeeEeecccc--eeeeccccccCcceeEEEECCC----CceEEeecCCCcEEEeecCC
Q 020461          262 DHRAGKFEAKFFDKIL--QEEIGGVKGHFGPINALAFNPD----GKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       262 d~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~d----~~~lat~s~Dg~i~l~~~~~  319 (326)
                        ..++..++-++...  -..+..+.+|..+|++++|.|.    -.+||+++.|| |+||++..
T Consensus       197 --~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  197 --HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             --cccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence              01111122222211  2335567799999999999995    34699999999 99999874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=4.1e-18  Score=148.77  Aligned_cols=292  Identities=15%  Similarity=0.229  Sum_probs=206.7

Q ss_pred             eeeecCCceeEEEEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            5 LMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .++...+.|+++. +|+  -+-++.|+..|.+.|||+.+++.+++++++...|+++.=+|--..++.|..+|+|.++|++
T Consensus       154 ~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK  232 (910)
T KOG1539|consen  154 FLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK  232 (910)
T ss_pred             eeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc
Confidence            3444445577664 665  4568889999999999999999999999999999999999988899999999999999999


Q ss_pred             CCcEEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe-ccCccceeEEEEecCCcE
Q 020461           83 TGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  160 (326)
                      .++.+..|+.+ +++..+.|..++.-..+.+.+.    +.+.+|++...      ..+..+ ..|.+.|+...|-|..+.
T Consensus       233 ~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~----G~m~~wDLe~k------kl~~v~~nah~~sv~~~~fl~~epV  302 (910)
T KOG1539|consen  233 FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSN----GDMAFWDLEKK------KLINVTRNAHYGSVTGATFLPGEPV  302 (910)
T ss_pred             cCcEEEEEEccccceeEEEeccCCCeeEEeccCC----ceEEEEEcCCC------eeeeeeeccccCCcccceecCCCce
Confidence            99999999986 8899999986544333333321    22334544321      233333 367788999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEEc-CCCCeEEEEeCCCeEEEee-------------------
Q 020461          161 IISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKA-ADGSHFLTGSLDKSAKLWD-------------------  219 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~s-~~~~~l~s~s~dg~i~iwd-------------------  219 (326)
                      +++++.|+.+++|=..++.- .+.+....||..+..++.+. .+|..+.+++.|++++.++                   
T Consensus       303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~  382 (910)
T KOG1539|consen  303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA  382 (910)
T ss_pred             EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence            99999999999885443221 12233345788888888876 5677777777777555443                   


Q ss_pred             ----------------------------------------------cCCcce-EEEEeec------cceEEEEeCCCCCe
Q 020461          220 ----------------------------------------------ARTLEL-IKTYVTE------RPVNAVTMSPLLDH  246 (326)
Q Consensus       220 ----------------------------------------------~~~~~~-~~~~~~~------~~~~~~~~s~~~~~  246 (326)
                                                                    +++... ...+.+.      ..+.++++++.|+.
T Consensus       383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF  462 (910)
T KOG1539|consen  383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF  462 (910)
T ss_pred             ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce
Confidence                                                          332221 1111111      24567888888888


Q ss_pred             eEEecCCCcceeEeecccCceeeeEeecccceeeeccc---cccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV---KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      .+++.+.+.              +..|+-+.+...+.+   ..|.++|+.++...-++.++|++.+|-+++|+|-..-
T Consensus       463 ~~IG~S~G~--------------Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  463 VFIGYSKGT--------------IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             EEEeccCCe--------------EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence            777654432              233333333333333   5799999999998888999999999999999987654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=9.5e-20  Score=146.32  Aligned_cols=214  Identities=22%  Similarity=0.298  Sum_probs=153.1

Q ss_pred             eccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461           47 TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (326)
Q Consensus        47 ~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (326)
                      .+.||+++|..++|+| +.+.++|||.|.+|++|.+..+.....                                    
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------  119 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------  119 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------------------------
Confidence            4679999999999999 456899999999999999865432110                                    


Q ss_pred             eeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC
Q 020461          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS  204 (326)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  204 (326)
                               -.+++..+.||+..|..+.|+|.- +.|+++|.|.+|.+|+..+++.+-++    .|...|.++.|+.||+
T Consensus       120 ---------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~dGs  186 (472)
T KOG0303|consen  120 ---------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNRDGS  186 (472)
T ss_pred             ---------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec----CCCCeEEEEEeccCCc
Confidence                     114677889999999999999975 57889999999999999999876654    3999999999999999


Q ss_pred             eEEEEeCCCeEEEeecCCcceEEEEe-ecc-ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee--
Q 020461          205 HFLTGSLDKSAKLWDARTLELIKTYV-TER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE--  280 (326)
Q Consensus       205 ~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--  280 (326)
                      +|+|.+.|..||+||.++++.+..-. ++. ...-+.|-.++. ++++|-...          ..-.+-+|+...-++  
T Consensus       187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~----------seRq~aLwdp~nl~eP~  255 (472)
T KOG0303|consen  187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRM----------SERQIALWDPNNLEEPI  255 (472)
T ss_pred             eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccc----------cccceeccCcccccCcc
Confidence            99999999999999999999988863 221 222333444455 444332211          111234454322111  


Q ss_pred             -eccccccCcceeEEEECCCCceEEeec-CCCcEEEeecCCCc
Q 020461          281 -IGGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDPDY  321 (326)
Q Consensus       281 -~~~~~~h~~~v~~v~~s~d~~~lat~s-~Dg~i~l~~~~~~~  321 (326)
                       +..+. .+..|.-=-|.||.+++.-++ -|+.||-|.+.++-
T Consensus       256 ~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  256 ALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence             11121 223454445678888875554 59999999887663

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=8.5e-20  Score=143.33  Aligned_cols=248  Identities=17%  Similarity=0.227  Sum_probs=173.3

Q ss_pred             cCCceeEEEEccC----CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccC
Q 020461            9 HERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET   83 (326)
Q Consensus         9 h~~~i~~~~~s~~----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~   83 (326)
                      |+..-...+|+-+    ..+||.++.-|.|||.|..++++...+.+|.+.|+.+.|+|+. +++++||.|.+||+|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            5556667777754    3489999999999999999999999999999999999999965 6899999999999999999


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      +.++..+..                                                 ..||...|.++.|++++.+|++
T Consensus       168 ~~Cv~VfGG-------------------------------------------------~egHrdeVLSvD~~~~gd~i~S  198 (385)
T KOG1034|consen  168 DVCVAVFGG-------------------------------------------------VEGHRDEVLSVDFSLDGDRIAS  198 (385)
T ss_pred             CeEEEEecc-------------------------------------------------cccccCcEEEEEEcCCCCeeec
Confidence            887655421                                                 2578888999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccc-------------------------cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEe
Q 020461          164 AGEDAIVRIWDTETGKLLKESD-------------------------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~-------------------------~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iw  218 (326)
                      +|.|..|++|+++..+....+.                         ...-|+..|-|+.|-.  .++++=|.++.|..|
T Consensus       199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w  276 (385)
T KOG1034|consen  199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCW  276 (385)
T ss_pred             cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEE
Confidence            9999999999998432211110                         1123666677777654  689999999999999


Q ss_pred             ec-CCcceEEEE-------------e-eccceEEEE--eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeee
Q 020461          219 DA-RTLELIKTY-------------V-TERPVNAVT--MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI  281 (326)
Q Consensus       219 d~-~~~~~~~~~-------------~-~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  281 (326)
                      .. +-.+.+...             . ....+..+-  |.|.++.++++.-.+.  +..+|.+.....      ......
T Consensus       277 ~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~--v~vwdL~~~ep~------~~ttl~  348 (385)
T KOG1034|consen  277 KPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK--VYVWDLDNNEPP------KCTTLT  348 (385)
T ss_pred             ecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCc--EEEEECCCCCCc------cCceEE
Confidence            87 222222211             1 112233333  4555666665543332  223332221100      000111


Q ss_pred             ccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          282 GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       282 ~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +  .--...|...+||.||..|+...+|++|.=|+.
T Consensus       349 ~--s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  349 H--SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             e--ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            1  112357999999999999999999999877764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=2.7e-19  Score=143.71  Aligned_cols=197  Identities=24%  Similarity=0.337  Sum_probs=150.8

Q ss_pred             eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCC-------CeeeeccCcccceEEEEEcCC-CCeEEEEeCCC
Q 020461            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQ   74 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~   74 (326)
                      .++.||.++|..++|+| +.+.|||||.|.+|.||.+..+       +.+..+.+|+..|.-++|+|- .+.|+|+|.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            46789999999999998 5678999999999999988655       335678899999999999995 46899999999


Q ss_pred             cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      +|.+||+.+++.+..+                                                    . |...|.++.|
T Consensus       155 ~v~iWnv~tgeali~l----------------------------------------------------~-hpd~i~S~sf  181 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITL----------------------------------------------------D-HPDMVYSMSF  181 (472)
T ss_pred             eEEEEeccCCceeeec----------------------------------------------------C-CCCeEEEEEe
Confidence            9999999988754321                                                    2 6677889999


Q ss_pred             ecCCcEEEEeeCCCcEEEEECCCCccccccccccCcce-eeEEEEEcCCCCeEEEEe---CCCeEEEeecCCcce---EE
Q 020461          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHFLTGS---LDKSAKLWDARTLEL---IK  227 (326)
Q Consensus       155 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~-~v~~v~~s~~~~~l~s~s---~dg~i~iwd~~~~~~---~~  227 (326)
                      +-+|.+|++.+.|..|+|||.++++.+.+-.   +|.+ ...-+.|-.+|..+-||-   ++..+-+||..+.+.   ..
T Consensus       182 n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~  258 (472)
T KOG0303|consen  182 NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ  258 (472)
T ss_pred             ccCCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE
Confidence            9999999999999999999999998887653   3432 234456677887444443   477899999776433   22


Q ss_pred             EEeeccceEEEEeCCCCCeeEEecCCCcc
Q 020461          228 TYVTERPVNAVTMSPLLDHVVLGGGQDAS  256 (326)
Q Consensus       228 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  256 (326)
                      ++....-+-.--+.++.+.++++|..|+.
T Consensus       259 elDtSnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  259 ELDTSNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             EeccCCceEEeeecCCCCEEEEEecCCcc
Confidence            23223334444467888888888766654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.3e-20  Score=148.33  Aligned_cols=210  Identities=19%  Similarity=0.274  Sum_probs=151.2

Q ss_pred             eecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCC
Q 020461            7 KGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      .+|.+.|.+++|+.. .+.|||||.|.+|++||+.++++..++..|.+.|.+++|+|. ..+|++|+.|++|++.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            368999999999876 568999999999999999999999999999999999999985 578999999999999999842


Q ss_pred             -cEEEEEecCCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EE
Q 020461           85 -AQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI  161 (326)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  161 (326)
                       ..-..+++.+.+-.+.|.+... .++++++.     +..+..++.     ..++++..++.|.++|..+.+++.-+ .+
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd-----G~v~~~D~R-----~~~~~vwt~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD-----GTVYYFDIR-----NPGKPVWTLKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCC-----ceEEeeecC-----CCCCceeEEEeccCCcceEEecCCCCcce
Confidence             2334456666666666665332 22222221     112222221     23478999999999999999998754 67


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceEE
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIK  227 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~  227 (326)
                      +|++.|++|++|++..-..-....+ .-.-+...|.++.|+-. .++.|+..+.+++||+.+...++
T Consensus       390 ~t~s~d~~Vklw~~~~~~~~~v~~~-~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  390 STASTDKVVKLWKFDVDSPKSVKEH-SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             eeccccceEEEEeecCCCCcccccc-cccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            8999999999999853222111110 01123355666666643 57778888889999998766543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.4e-18  Score=140.92  Aligned_cols=246  Identities=15%  Similarity=0.247  Sum_probs=173.7

Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEEEccC--CcEEEEEec-CCCcceeeeecCCe-EEEEE-cCccceeceeeeeee
Q 020461           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVET--GAQLFTFNF-DSPARSVDFAVGDK-LAVIT-TDPFMELNSAIHVKR  126 (326)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~  126 (326)
                      .+.|.++.|+|....|++|+.|+++++|-++.  .+.++.+.+ ..|+.+..|.+.+. .++.+ ..+++..      ++
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys------yD  286 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS------YD  286 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE------ee
Confidence            45799999999999999999999999998754  444555554 46778888887655 33333 3333322      11


Q ss_pred             eccCCCCCCCceEEEeccCc-cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe
Q 020461          127 IARDPADQGGESVLILKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH  205 (326)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~  205 (326)
                      +..    ..-..+..+.++. ..+.....+|++++|+..|..|.|.+....+++.+..+.    -.+.|..++|+.|+..
T Consensus       287 le~----ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K----ieG~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  287 LET----AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK----IEGVVSDFTFSSDSKE  358 (514)
T ss_pred             ccc----cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee----eccEEeeEEEecCCcE
Confidence            110    0011111222332 345667789999999999999999999999998887664    3578999999999999


Q ss_pred             EEEEeCCCeEEEeecCCcceEEEEeeccce--EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461          206 FLTGSLDKSAKLWDARTLELIKTYVTERPV--NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (326)
Q Consensus       206 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (326)
                      |++.+.+|.|.+||+++..+++.+..+..+  ..+|.+++++.+++  |.+..++.++|...-      +....++++..
T Consensus       359 l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~--GS~~GiVNIYd~~s~------~~s~~PkPik~  430 (514)
T KOG2055|consen  359 LLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT--GSDSGIVNIYDGNSC------FASTNPKPIKT  430 (514)
T ss_pred             EEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe--ccCcceEEEeccchh------hccCCCCchhh
Confidence            999999999999999999999999876654  45666777775544  344445555542221      11123444555


Q ss_pred             ccccCcceeEEEECCCCceEEeecC--CCcEEEeecCC
Q 020461          284 VKGHFGPINALAFNPDGKSFSSGGE--DGYVRLHHFDP  319 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~~lat~s~--Dg~i~l~~~~~  319 (326)
                      +..-...|+++.|+||+..||.||.  +..+||-+++.
T Consensus       431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            5555668999999999999988876  78889877764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.9e-19  Score=143.47  Aligned_cols=200  Identities=27%  Similarity=0.325  Sum_probs=139.0

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~   93 (326)
                      .+++|+.+|..|++++.||++|||+..+...+..+.+|.+.|..++|+||+++|++-+.| ..+||+.+++..+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999999988888999999999999999999999999999 8999999988543322110


Q ss_pred             CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-----cEEEEeeCCC
Q 020461           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-----RTIISAGEDA  168 (326)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~s~~~d~  168 (326)
                      ..                                                  +-....+.|+.++     ..++.-..-+
T Consensus       227 ~k--------------------------------------------------~~~~~~cRF~~d~~~~~l~laa~~~~~~  256 (398)
T KOG0771|consen  227 SK--------------------------------------------------DEMFSSCRFSVDNAQETLRLAASQFPGG  256 (398)
T ss_pred             cc--------------------------------------------------chhhhhceecccCCCceEEEEEecCCCC
Confidence            00                                                  0000011111111     1112222233


Q ss_pred             cEEEEECCCCc---cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCC
Q 020461          169 IVRIWDTETGK---LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (326)
Q Consensus       169 ~i~~wd~~~~~---~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~  245 (326)
                      .|+.||+...+   ..+.... ......|.+++.+++|++++.|+.||.|-|++..+.++++-.                
T Consensus       257 ~v~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v----------------  319 (398)
T KOG0771|consen  257 GVRLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV----------------  319 (398)
T ss_pred             ceeEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee----------------
Confidence            34444432111   1111111 112356999999999999999999999999997655443221                


Q ss_pred             eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                                                            .+.|..-|+.+.|+||.+++++-|.|.+++|..+.-
T Consensus       320 --------------------------------------k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  320 --------------------------------------KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             --------------------------------------hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence                                                  124667789999999999999999999888876654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=2.5e-18  Score=133.00  Aligned_cols=266  Identities=18%  Similarity=0.290  Sum_probs=179.3

Q ss_pred             eeeeecCCceeEEEEccCCC-EEEeecCC-------CCeEEEecCCC---------Ceeeecc-CcccceEEEEEcCCCC
Q 020461            4 ILMKGHERPLTYLKYNKDGD-LLFSCAKD-------HTPTVWFADNG---------ERLGTYR-GHNGAVWCCDVSRDSM   65 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~-~l~s~~~d-------~~v~iw~~~~~---------~~~~~~~-~h~~~V~~~~~~~~~~   65 (326)
                      .+|..|.+.|..++-+|-.+ +|+++-++       ..+-||.+...         +++..+. ++.+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            35677888999999999655 55555442       34568977543         3344454 5677999999999998


Q ss_pred             eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC
Q 020461           66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (326)
Q Consensus        66 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (326)
                      .+++-. |..|.+|++..+..+... ...                 .                     .+       .++
T Consensus       137 klasm~-dn~i~l~~l~ess~~vae-v~s-----------------s---------------------~s-------~e~  169 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAE-VLS-----------------S---------------------ES-------AEM  169 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchhee-ecc-----------------c---------------------cc-------ccc
Confidence            887665 788999999876542100 000                 0                     00       001


Q ss_pred             ccceeEEEEec--CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCC
Q 020461          146 QGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART  222 (326)
Q Consensus       146 ~~~i~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~  222 (326)
                      ....++-.|+|  ++..+++. .|+++..||.++.+....+.  .+|...|..++|.|+.. +|+||+.||.|+|||.|.
T Consensus       170 ~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             cceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence            22234456777  45566654 58899999999877655544  57889999999999865 588999999999999986


Q ss_pred             -cceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCc-eeeeEeec---------------ccceeeeccc
Q 020461          223 -LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG-KFEAKFFD---------------KILQEEIGGV  284 (326)
Q Consensus       223 -~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~---------------~~~~~~~~~~  284 (326)
                       ..+++++. +...+.++-|+|..+.++++++.|...+-..-.... ...+.+-+               ....-.+..+
T Consensus       247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty  326 (370)
T KOG1007|consen  247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY  326 (370)
T ss_pred             CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence             45566654 446799999999999999999888754432111110 00111111               1111124456


Q ss_pred             cccCcceeEEEECCCC-ceEEeecCCCcEEEeecCC
Q 020461          285 KGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       285 ~~h~~~v~~v~~s~d~-~~lat~s~Dg~i~l~~~~~  319 (326)
                      ..|..-|.+++||.-. =.||+=|.||.+.|=++.+
T Consensus       327 dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  327 DEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            7899999999998644 4689999999999877654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=1.8e-18  Score=146.82  Aligned_cols=244  Identities=17%  Similarity=0.195  Sum_probs=164.6

Q ss_pred             EEEEccC---CCEEEeecCCCCeEEEecCCCCe------eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461           15 YLKYNKD---GDLLFSCAKDHTPTVWFADNGER------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        15 ~~~~s~~---~~~l~s~~~d~~v~iw~~~~~~~------~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      ...|++-   .++|+.+..||.|.++|......      +..+.+|.++|..+.|.|....|++++.|.++++||+++++
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            3566643   45788999999999999764422      35667899999999999955689999999999999998776


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEe
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISA  164 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  164 (326)
                      ++.                                                  .....||.+.+.+++|.|+++ .|++|
T Consensus       134 l~G--------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tG  163 (720)
T KOG0321|consen  134 LVG--------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTG  163 (720)
T ss_pred             eec--------------------------------------------------ceeecccccccchhhhccCCCcceeec
Confidence            431                                                  112457888999999999875 78899


Q ss_pred             eCCCcEEEEECCCCc--cccc----------------------cccccCcceeeEE---EEEcCCCCeEEEEeC-CCeEE
Q 020461          165 GEDAIVRIWDTETGK--LLKE----------------------SDKETGHKKTITS---LAKAADGSHFLTGSL-DKSAK  216 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~--~~~~----------------------~~~~~~h~~~v~~---v~~s~~~~~l~s~s~-dg~i~  216 (326)
                      +.||.|.|||++-..  ....                      ...-..|...+.+   +.+..|...||+++. |+.|+
T Consensus       164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK  243 (720)
T KOG0321|consen  164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK  243 (720)
T ss_pred             cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence            999999999986322  0000                      0001123444555   556678889999988 99999


Q ss_pred             EeecCCcceEEEEee--------c----cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc--ceeeec
Q 020461          217 LWDARTLELIKTYVT--------E----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEIG  282 (326)
Q Consensus       217 iwd~~~~~~~~~~~~--------~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~  282 (326)
                      +||++..........        .    .-+.++.....|..+++.-.++              .|++|+..  ...++.
T Consensus       244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~--------------sIy~ynm~s~s~sP~~  309 (720)
T KOG0321|consen  244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN--------------SIYFYNMRSLSISPVA  309 (720)
T ss_pred             EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC--------------cEEEEeccccCcCchh
Confidence            999997654333211        0    1234555556666666543322              23333322  122333


Q ss_pred             cccccCc--ceeEEEECCCCceEEeecCCCcEEEeecCCCce
Q 020461          283 GVKGHFG--PINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       283 ~~~~h~~--~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      .+.+|..  .-..-..+||+.++++|+.|....+|.+..-+.
T Consensus       310 ~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  310 EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence            3444422  112344589999999999999999999876443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=6.4e-18  Score=136.03  Aligned_cols=301  Identities=14%  Similarity=0.186  Sum_probs=193.1

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC------CCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------GERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~------~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      -+++|.+.|.++.||.++++|++|+.|..+++|+...      .+.+..... |...|.|++|....+++++|+.+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            3678999999999999999999999999999998753      344443333 446899999999889999999999999


Q ss_pred             EEEccCCcEEEEEecCC---CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           78 LWNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      +.|+++.+.+..+....   .+-.++.+|.+.++++.+..     ....+++....+.  .+.++ .+..-...-..+.|
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~-----~~V~~~D~Rd~~~--~~~~~-~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA-----KLVSFIDNRDRQN--PISLV-LPANSGKNFYTAEF  202 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecC-----ceEEEEeccCCCC--CCcee-eecCCCccceeeee
Confidence            99999999888876543   45556666655555444332     1222233222111  11122 22222344567889


Q ss_pred             ecCCc-EEEEeeCCCcEEEEECCCCcc-ccccc---cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc-eEEE
Q 020461          155 GPLNR-TIISAGEDAIVRIWDTETGKL-LKESD---KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKT  228 (326)
Q Consensus       155 ~~~~~-~l~s~~~d~~i~~wd~~~~~~-~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~  228 (326)
                      +|..+ +|++.+..+-+.+||++.... +....   ..........++.|+|+|..|++--....=.+||+.++. .+.+
T Consensus       203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k  282 (609)
T KOG4227|consen  203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK  282 (609)
T ss_pred             cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence            99764 778999999999999975432 11111   111112345788999999999887766666778887743 3444


Q ss_pred             Eeecc-------ceEEEEeCCCCCeeEEecCCCcceeEee----cccCceeeeEeecc-------cceeeeccccccCcc
Q 020461          229 YVTER-------PVNAVTMSPLLDHVVLGGGQDASAVTTT----DHRAGKFEAKFFDK-------ILQEEIGGVKGHFGP  290 (326)
Q Consensus       229 ~~~~~-------~~~~~~~s~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~  290 (326)
                      +.+..       .+.+++|..+-  -+++|+ |...+.+|    +...+.+...--+.       ....++..++||.+-
T Consensus       283 ~D~N~~GY~N~~T~KS~~F~~D~--~v~tGS-D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv  359 (609)
T KOG4227|consen  283 SDHNPNGYCNIKTIKSMTFIDDY--TVATGS-DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV  359 (609)
T ss_pred             ccCCCCcceeeeeeeeeeeecce--eeeccC-cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc
Confidence            43221       23445554432  233333 32222222    11111110000000       012345678999999


Q ss_pred             eeEEEECCCCceEEeecCCCcEEEee
Q 020461          291 INALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       291 v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      ++.|.|+|...+|++.+....++||+
T Consensus       360 ~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  360 PNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             ccceeecCCcceEeccchhhheeccc
Confidence            99999999999999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=4.4e-19  Score=148.53  Aligned_cols=211  Identities=27%  Similarity=0.408  Sum_probs=148.7

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC------C----CeeeeccCcccceEEEEEcCCCCeEEEEeCC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------G----ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD   73 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~------~----~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d   73 (326)
                      ..+++|+++|.|++++++++++++|+-||+|+.|++..      .    .....+.||.++||.+++|+....|++++.|
T Consensus       338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence            67999999999999999999999999999999996531      1    2345678999999999999988899999999


Q ss_pred             CcEEEEEccCCcEEEEEecC---CCcceeeeecCC-eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-----c
Q 020461           74 QTAKLWNVETGAQLFTFNFD---SPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-----G  144 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  144 (326)
                      ||+++|+...... +.+.-.   .-..++++.... .+.+++.        ......+ .+..  .......+.     +
T Consensus       418 gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~--------~~~~~~~-~~~e--v~s~~~~~~s~~~~~  485 (577)
T KOG0642|consen  418 GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF--------RFGYTSI-DDME--VVSDLLIFESSASPG  485 (577)
T ss_pred             ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc--------ccccccc-hhhh--hhhheeeccccCCCc
Confidence            9999999876554 222110   111122221111 0000000        0000000 0000  000111111     0


Q ss_pred             --CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          145 --PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       145 --~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                        ....++.+.++|.....+++..|+.|+++|..+++.+...   ..|...++++++.|+|.+|++++.|+.+++|.+..
T Consensus       486 ~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~---~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  486 PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM---VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ccccCccceEEecCCCCeeEecccCCceecccccccccchhe---eeccceecceeecCCCceEEeecCCceeehhhccc
Confidence              1135778889999999999999999999999999877654   46889999999999999999999999999999987


Q ss_pred             cceEEEE
Q 020461          223 LELIKTY  229 (326)
Q Consensus       223 ~~~~~~~  229 (326)
                      ..++...
T Consensus       563 k~~~~es  569 (577)
T KOG0642|consen  563 KTCVLES  569 (577)
T ss_pred             hheeecc
Confidence            7776554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=9.7e-19  Score=137.46  Aligned_cols=167  Identities=23%  Similarity=0.396  Sum_probs=131.0

Q ss_pred             eeeeecCCceeEEEEcc----C-CCEEEeecCCCCeEEEecCCCCe---eeec--cCcccceEEEEEcCC----CCeEEE
Q 020461            4 ILMKGHERPLTYLKYNK----D-GDLLFSCAKDHTPTVWFADNGER---LGTY--RGHNGAVWCCDVSRD----SMTLIT   69 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~----~-~~~l~s~~~d~~v~iw~~~~~~~---~~~~--~~h~~~V~~~~~~~~----~~~l~s   69 (326)
                      .++++|..+|..++|.+    + -+.+++.+. ..+.||+......   ++..  ..|...-..++|+-+    ..+++.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            46788999999999994    2 345555555 4778887654432   2222  236666777888654    347888


Q ss_pred             EeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccce
Q 020461           70 GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (326)
Q Consensus        70 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (326)
                      ||.-|.|++.|+.+++..                                                    ..+.+|...|
T Consensus       111 ~G~~GvIrVid~~~~~~~----------------------------------------------------~~~~ghG~sI  138 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCS----------------------------------------------------KNYRGHGGSI  138 (385)
T ss_pred             ecceeEEEEEecchhhhc----------------------------------------------------cceeccCccc
Confidence            889999999998765432                                                    2245677788


Q ss_pred             eEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461          150 NRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       150 ~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (326)
                      +.+.++|+. +++++++.|.+||+|++.+..++..+-...+|...|.+++|+++|.++++++.|.+|++|++...
T Consensus       139 Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  139 NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            888899976 58889999999999999999999888888899999999999999999999999999999999843

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.81  E-value=9.1e-20  Score=159.01  Aligned_cols=248  Identities=21%  Similarity=0.400  Sum_probs=174.8

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      -|.||..+|+|+.|...|.++++|+.|..|+||..+++.+...++||.+.|..++.+.+...++++|.|..|++|-+.++
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            46899999999999999999999999999999999999999999999999999999888888999999999999998765


Q ss_pred             cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .                                                    ++.++.||.+.|++++|+|.    .+.
T Consensus       265 ~----------------------------------------------------pvsvLrghtgavtaiafsP~----~ss  288 (1113)
T KOG0644|consen  265 A----------------------------------------------------PVSVLRGHTGAVTAIAFSPR----ASS  288 (1113)
T ss_pred             c----------------------------------------------------hHHHHhccccceeeeccCcc----ccC
Confidence            3                                                    33456789999999999995    378


Q ss_pred             eCCCcEEEEECCCCcccccccccc-CcceeeEEEEEcCCCC-------------------------------------eE
Q 020461          165 GEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGS-------------------------------------HF  206 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~-------------------------------------~l  206 (326)
                      +.||++++||.+-......-.+.. .-...+.++.+-.++.                                     +.
T Consensus       289 s~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~  368 (1113)
T KOG0644|consen  289 SDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIV  368 (1113)
T ss_pred             CCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccc
Confidence            999999999977111110000000 0001122222222222                                     23


Q ss_pred             EEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc
Q 020461          207 LTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (326)
Q Consensus       207 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  285 (326)
                      +++-.+-.++.|++.++.+++... +...+..+.++|....++.++|.|+..+ +||...+... +.|          ..
T Consensus       369 ~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~-iwdi~eg~pi-k~y----------~~  436 (1113)
T KOG0644|consen  369 VTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTI-IWDIWEGIPI-KHY----------FI  436 (1113)
T ss_pred             eeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceE-eeecccCCcc-eee----------ec
Confidence            333344456677777776665543 3346777888888888888777766433 2333222211 111          13


Q ss_pred             ccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          286 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       286 ~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +| +.+..-+||+||..++....-|.+.|+.+-..-
T Consensus       437 gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  437 GH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             cc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            34 467788999999999988888999887765443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=7.1e-16  Score=134.84  Aligned_cols=289  Identities=31%  Similarity=0.493  Sum_probs=198.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecC-CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~   81 (326)
                      ..+.+|...|..++|+|+++++++++. |+.+++|+..++..+..+.+|...|.+++|+|++. .+++++.|++|++||.
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~  228 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL  228 (466)
T ss_pred             EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence            457789999999999999999998886 99999999999888989999999999999999987 5666699999999998


Q ss_pred             cCCcEEE-EEecCCCcceeeeecCCeEEE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           82 ETGAQLF-TFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      ..+.... .+..........+.+.....+ ...+      ..+.++......     .......+|...+.++.|+|++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         229 STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSD------GTIRLWDLRSSS-----SLLRTLSGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             CCCcEEeeecCCCCcceeEeECCCCCEEEEecCC------CcEEEeeecCCC-----cEEEEEecCCccEEEEEECCCCC
Confidence            8766665 343322222114555543332 2222      223333332111     12233367788999999999888


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE-eCCCeEEEeecCCcceEEEEeeccceEEE
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAV  238 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  238 (326)
                      .+++++.|+.+++||..+........ ...|...+..+.+.+++..++.+ ..|+.+++|+...............+..+
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSV  376 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEE
Confidence            88889999999999988766544332 23566678888884333556665 68899999999887733333333337788


Q ss_pred             EeCCCCCeeEEe-cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          239 TMSPLLDHVVLG-GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       239 ~~s~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      .+.+ . ....+ ...+.             .+.+|+............+...+....+++++..+++++.++.+++|+.
T Consensus       377 ~~~~-~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (466)
T COG2319         377 SFSP-D-GRVVSSGSTDG-------------TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL  441 (466)
T ss_pred             EECC-C-CCEEEEecCCC-------------ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence            8888 5 44443 22221             1233433333222222222267899999999999999999999999988


Q ss_pred             CC
Q 020461          318 DP  319 (326)
Q Consensus       318 ~~  319 (326)
                      ..
T Consensus       442 ~~  443 (466)
T COG2319         442 KT  443 (466)
T ss_pred             cC
Confidence            75

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=9.6e-18  Score=126.81  Aligned_cols=242  Identities=17%  Similarity=0.235  Sum_probs=158.5

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCC---------C-CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADN---------G-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~---------~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      |.+-+++|.+++|++|+.+|.|-+..++.         + ..+-.+++|.++|+.++|+.  .+|++|+. |.|+=|..+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEeeeh
Confidence            45567899999999999999999997753         1 23445689999999999983  46666655 999988765


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      +......                               ....|+...        +..+-...-..|+.+-..|..+-++
T Consensus        90 E~~es~~-------------------------------~K~lwe~~~--------P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   90 EEEESLA-------------------------------TKRLWEVKI--------PMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             hhhhhcc-------------------------------chhhhhhcC--------ccccCcccCCccceeEeccCCCcEE
Confidence            4332100                               000111100        0000011123578888899888888


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceE------
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN------  236 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------  236 (326)
                      .++.|+.+.-||+++|+..+++.   ||..-+.++..-.....+++|++||++|+||.+++++++.+......+      
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            88999999999999998877664   899999999985555679999999999999999999999876432211      


Q ss_pred             ---EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          237 ---AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       237 ---~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                         ..+...+.+.+++++|..-               .+|.....+.+.. ..-.++|..+.|-  ...+.+++.-..|.
T Consensus       208 g~wigala~~edWlvCGgGp~l---------------slwhLrsse~t~v-fpipa~v~~v~F~--~d~vl~~G~g~~v~  269 (325)
T KOG0649|consen  208 GKWIGALAVNEDWLVCGGGPKL---------------SLWHLRSSESTCV-FPIPARVHLVDFV--DDCVLIGGEGNHVQ  269 (325)
T ss_pred             CceeEEEeccCceEEecCCCce---------------eEEeccCCCceEE-EecccceeEeeee--cceEEEecccccee
Confidence               2344455567777665432               2333222222211 1223456677774  44455556555554


Q ss_pred             Eeec
Q 020461          314 LHHF  317 (326)
Q Consensus       314 l~~~  317 (326)
                      -|.+
T Consensus       270 ~~~l  273 (325)
T KOG0649|consen  270 SYTL  273 (325)
T ss_pred             eeee
Confidence            4443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.8e-17  Score=137.56  Aligned_cols=306  Identities=16%  Similarity=0.232  Sum_probs=199.6

Q ss_pred             eeeeecCC-ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~-~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .++.|+++ .|..++|+ ++.+|+|.+.+|+|.-||+.+++.........++||+++.+|.+..++.|+.||.+...+..
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~  140 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG  140 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence            45566554 68999999 56679999999999999999999999999999999999999999999999999987788887


Q ss_pred             CCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC--CCceEEEecc-CccceeEEEEec
Q 020461           83 TGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--GGESVLILKG-PQGRINRAVWGP  156 (326)
Q Consensus        83 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~i~~~~~~~  156 (326)
                      .++..+.-.+.   +.+.++.|.+...-++.+..     +..+.+|+........  .. .+..+.. ..--|.++.+- 
T Consensus       141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-----Dg~Iriwd~~~~~t~~~~~~-~~d~l~k~~~~iVWSv~~L-  213 (691)
T KOG2048|consen  141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-----DGVIRIWDVKSGQTLHIITM-QLDRLSKREPTIVWSVLFL-  213 (691)
T ss_pred             CceEEEEeecccccceEEEEEecCCccEEEeccc-----CceEEEEEcCCCceEEEeee-cccccccCCceEEEEEEEe-
Confidence            77776654443   45666777776663333322     2234444443211100  00 0000111 11123344443 


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--E---EEEee
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--I---KTYVT  231 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~---~~~~~  231 (326)
                      ....|++|..-|+|++||...++++...   ..|.+.|.+++..+++.++++++.|+.|.-+...+...  +   +.-.+
T Consensus       214 rd~tI~sgDS~G~V~FWd~~~gTLiqS~---~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h  290 (691)
T KOG2048|consen  214 RDSTIASGDSAGTVTFWDSIFGTLIQSH---SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH  290 (691)
T ss_pred             ecCcEEEecCCceEEEEcccCcchhhhh---hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC
Confidence            3467999999999999999998877654   35889999999999999999999999999888766532  1   11124


Q ss_pred             ccceEEEEeCCCCCeeEEecCCCcceeEe-------ecccCc--------------eeeeEeeccc--------ce----
Q 020461          232 ERPVNAVTMSPLLDHVVLGGGQDASAVTT-------TDHRAG--------------KFEAKFFDKI--------LQ----  278 (326)
Q Consensus       232 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-------~d~~~~--------------~~~~~~~~~~--------~~----  278 (326)
                      ...+.+++..++   .+++||.|......       .|.+..              ..-..+|..-        ..    
T Consensus       291 ~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g  367 (691)
T KOG2048|consen  291 AHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQG  367 (691)
T ss_pred             cccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccccc
Confidence            567888887765   55566666543321       111100              0001112110        00    


Q ss_pred             -----eeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCceeee
Q 020461          279 -----EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK  325 (326)
Q Consensus       279 -----~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~~~  325 (326)
                           ..++-...-...|.+-+.||||+.+|-+. =.+.+|+++.++- ++|
T Consensus       368 ~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~-~vk  417 (691)
T KOG2048|consen  368 EYNYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDP-NVK  417 (691)
T ss_pred             ccChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCc-cee
Confidence                 00110111224789999999999999776 3567888888876 544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=3.9e-19  Score=160.09  Aligned_cols=243  Identities=19%  Similarity=0.280  Sum_probs=181.4

Q ss_pred             eEEEEccCCCE----EEeecCCCCeEEEecCCC------CeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEcc
Q 020461           14 TYLKYNKDGDL----LFSCAKDHTPTVWFADNG------ERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE   82 (326)
Q Consensus        14 ~~~~~s~~~~~----l~s~~~d~~v~iw~~~~~------~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~   82 (326)
                      +.++|.+.|..    ||.|..||.|.+|+....      +.+.++..|++.|..++|++... +|++|+.||.|.+||++
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln  147 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN  147 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence            68899998876    899999999999987541      34667788999999999999654 99999999999999997


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTI  161 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l  161 (326)
                      .-+.-...             +                                     -....+.|.+++|+..- ..|
T Consensus       148 n~~tP~~~-------------~-------------------------------------~~~~~~eI~~lsWNrkvqhIL  177 (1049)
T KOG0307|consen  148 KPETPFTP-------------G-------------------------------------SQAPPSEIKCLSWNRKVSHIL  177 (1049)
T ss_pred             CcCCCCCC-------------C-------------------------------------CCCCcccceEeccchhhhHHh
Confidence            53321110             0                                     00123456677777643 477


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCC---eEEEeecCCc-ceEEEE-eeccce
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDK---SAKLWDARTL-ELIKTY-VTERPV  235 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg---~i~iwd~~~~-~~~~~~-~~~~~~  235 (326)
                      ++++.+|++.|||++..+.+-.+....+ +..+..+.|+|+.. .+++++.|.   .|.+||+|.- ..++.+ .+..-+
T Consensus       178 AS~s~sg~~~iWDlr~~~pii~ls~~~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi  256 (1049)
T KOG0307|consen  178 ASGSPSGRAVIWDLRKKKPIIKLSDTPG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI  256 (1049)
T ss_pred             hccCCCCCceeccccCCCcccccccCCC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccce
Confidence            8999999999999998766554432211 24477899999754 577777665   5999998853 344444 355678


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEE
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRL  314 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l  314 (326)
                      -++.|.+.+++++++.|.|..             +..|+.++++-+..+..-..++..+.|+|... .+|.++-||.|.|
T Consensus       257 lslsWc~~D~~lllSsgkD~~-------------ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I  323 (1049)
T KOG0307|consen  257 LSLSWCPQDPRLLLSSGKDNR-------------IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI  323 (1049)
T ss_pred             eeeccCCCCchhhhcccCCCC-------------eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence            899999999888877777653             34577777777777776678899999999665 7899999999999


Q ss_pred             eecCCC
Q 020461          315 HHFDPD  320 (326)
Q Consensus       315 ~~~~~~  320 (326)
                      +++...
T Consensus       324 ~sl~~~  329 (1049)
T KOG0307|consen  324 YSLQGT  329 (1049)
T ss_pred             eeeecC
Confidence            887653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=1.8e-18  Score=142.89  Aligned_cols=238  Identities=18%  Similarity=0.239  Sum_probs=172.9

Q ss_pred             ceeEEEEccCCC-EEEeecCCCCeEEEecCC--CCe--eeeccCccc-ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461           12 PLTYLKYNKDGD-LLFSCAKDHTPTVWFADN--GER--LGTYRGHNG-AVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        12 ~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~--~~~--~~~~~~h~~-~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      .+..++|+.... ..++.+.|..+++|.-..  ++.  +....+... .|.+..+   ..++++||..+.|++||++. +
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~---S~y~~sgG~~~~Vkiwdl~~-k  111 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ---SLYEISGGQSGCVKIWDLRA-K  111 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc---ceeeeccCcCceeeehhhHH-H
Confidence            367888887664 344566899999995322  222  333334322 2444444   47999999999999999873 2


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      .                                                   ..+.+++|++.|+++.|+-...+|++++
T Consensus       112 l---------------------------------------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs  140 (673)
T KOG4378|consen  112 L---------------------------------------------------IHRFLKDHQSTVTYVDYNNTDEYIASVS  140 (673)
T ss_pred             H---------------------------------------------------HhhhccCCcceeEEEEecCCcceeEEec
Confidence            1                                                   1223578889999999999999999999


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-EEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSP  242 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~  242 (326)
                      ..|.|.|-.+.++....++..  +....|.-+.+++-.+. |.+++.+|.|.+||+....++..+.  +..+...++|+|
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~--~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp  218 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTI--DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP  218 (673)
T ss_pred             cCCcEEEEecccCccccceec--CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence            999999999988766555432  33456778999987554 6688999999999998877776653  456788999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ....++++.|.|..+ ..+|.+.            +.....+ ....+..+++|+++|.+|++|+..|.|..++++..
T Consensus       219 sne~l~vsVG~Dkki-~~yD~~s------------~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  219 SNEALLVSVGYDKKI-NIYDIRS------------QASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             CccceEEEecccceE-EEeeccc------------cccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            999999888877542 2334332            2222222 12357899999999999999999999999888764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.7e-15  Score=132.47  Aligned_cols=290  Identities=31%  Similarity=0.549  Sum_probs=203.7

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeeccCccc-ceEEEEE-cCCCC-eEEEEeC-CCcEEEE
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNG-AVWCCDV-SRDSM-TLITGSA-DQTAKLW   79 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~~~h~~-~V~~~~~-~~~~~-~l~s~~~-d~~i~~w   79 (326)
                      .+.+|...+..+.|.+++..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+++|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            567899999999999999999999999999999998887 6777777443 6777776 77777 5555455 9999999


Q ss_pred             EccC-CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           80 NVET-GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        80 d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      |... ......+. +...+..+.+.+.....+....    ....+.++....      +..+..+.+|...+.++.|+|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~  209 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT------GKPLSTLAGHTDPVSSLAFSPD  209 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC------CceEEeeccCCCceEEEEEcCC
Confidence            9987 44444443 3345556777777654443321    122333443322      3566677789999999999999


Q ss_pred             Cc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce-EEEE-eeccc
Q 020461          158 NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTERP  234 (326)
Q Consensus       158 ~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~  234 (326)
                      +. .+++++.|+.|++||...+.....  ...+|.... ...+++++.++++++.|+.+++|+.+.... +..+ .+...
T Consensus       210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  286 (466)
T COG2319         210 GGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS  286 (466)
T ss_pred             cceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence            98 666669999999999886655542  223565554 338999998999999999999999987664 3333 23567


Q ss_pred             eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc--ccccCcceeEEEECCCCceEEee-cCCCc
Q 020461          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG--VKGHFGPINALAFNPDGKSFSSG-GEDGY  311 (326)
Q Consensus       235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~s~d~~~lat~-s~Dg~  311 (326)
                      +.++.+.|++..+++ ++.+. .+..+|.+....            ...  ...|...+..+.|++++..++.+ ..|+.
T Consensus       287 v~~~~~~~~~~~~~~-~~~d~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  352 (466)
T COG2319         287 VLSVAFSPDGKLLAS-GSSDG-TVRLWDLETGKL------------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT  352 (466)
T ss_pred             EEEEEECCCCCEEEE-eeCCC-cEEEEEcCCCce------------EEEeeecccCCceEEEEECCCCCEEEEeecCCCc
Confidence            889999997777777 55553 243333332221            111  23677789999994443555555 78899


Q ss_pred             EEEeecCCCc
Q 020461          312 VRLHHFDPDY  321 (326)
Q Consensus       312 i~l~~~~~~~  321 (326)
                      +++|..+...
T Consensus       353 ~~~~~~~~~~  362 (466)
T COG2319         353 IRLWDLRTGK  362 (466)
T ss_pred             EEeeecCCCc
Confidence            9999887664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=7.2e-17  Score=126.88  Aligned_cols=247  Identities=19%  Similarity=0.282  Sum_probs=170.7

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCC-------Ce-----eeeccC-cccceEEEEEc-------CCCCeEEEEeC
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNG-------ER-----LGTYRG-HNGAVWCCDVS-------RDSMTLITGSA   72 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-------~~-----~~~~~~-h~~~V~~~~~~-------~~~~~l~s~~~   72 (326)
                      .....|||||..|++-+.|..+++|++...       ..     ..+++- ....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            456789999999999999999999987421       11     111111 12346665553       56778999999


Q ss_pred             CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461           73 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (326)
Q Consensus        73 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (326)
                      |.-|++||.-+|+...++..-        .              ..      .            .       -....++
T Consensus       132 ~~PIh~wdaftG~lraSy~~y--------d--------------h~------d------------e-------~taAhsL  164 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAY--------D--------------HQ------D------------E-------YTAAHSL  164 (406)
T ss_pred             cCceeeeeccccccccchhhh--------h--------------hH------H------------h-------hhhheeE
Confidence            999999999998876543210        0              00      0            0       0123468


Q ss_pred             EEecCCcEEEEeeCCCcEEEEEC-CCCccccc---ccc-ccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceE
Q 020461          153 VWGPLNRTIISAGEDAIVRIWDT-ETGKLLKE---SDK-ETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       153 ~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~---~~~-~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~  226 (326)
                      .|+|+|.+|+. +....|+++|+ +.|+....   +.. ..+..+.+.+++++|-.. .++.|+....+-|+.-....++
T Consensus       165 ~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl  243 (406)
T KOG2919|consen  165 QFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL  243 (406)
T ss_pred             EecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce
Confidence            89999999885 45778999999 55544322   111 223467788999999655 8999999999888887777777


Q ss_pred             EEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCc-ceeEEEE--CCCCce
Q 020461          227 KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALAF--NPDGKS  302 (326)
Q Consensus       227 ~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~--s~d~~~  302 (326)
                      ..+. +..-|.-+.|.++|+.+++++..+.. +..||.|..           ...+-.+..|.+ +=..|-|  .|+++.
T Consensus       244 ~llggh~gGvThL~~~edGn~lfsGaRk~dk-Il~WDiR~~-----------~~pv~~L~rhv~~TNQRI~FDld~~~~~  311 (406)
T KOG2919|consen  244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDK-ILCWDIRYS-----------RDPVYALERHVGDTNQRILFDLDPKGEI  311 (406)
T ss_pred             eeecccCCCeeeEEeccCcCeecccccCCCe-EEEEeehhc-----------cchhhhhhhhccCccceEEEecCCCCce
Confidence            6654 45678999999999999988765543 234554432           223334455655 3344555  589999


Q ss_pred             EEeecCCCcEEEeecCC
Q 020461          303 FSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       303 lat~s~Dg~i~l~~~~~  319 (326)
                      ||+|+.||.|++|++..
T Consensus       312 LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  312 LASGDTDGSVRVWDLKD  328 (406)
T ss_pred             eeccCCCccEEEEecCC
Confidence            99999999999999875

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=3.1e-17  Score=127.09  Aligned_cols=254  Identities=19%  Similarity=0.227  Sum_probs=170.1

Q ss_pred             ceeEEEEc--cCC-CEEEeecC----CCCeEEEec--CCCCeeeec-cCcccceEEEEEcCCCC-----eEEEEeCCCcE
Q 020461           12 PLTYLKYN--KDG-DLLFSCAK----DHTPTVWFA--DNGERLGTY-RGHNGAVWCCDVSRDSM-----TLITGSADQTA   76 (326)
Q Consensus        12 ~i~~~~~s--~~~-~~l~s~~~----d~~v~iw~~--~~~~~~~~~-~~h~~~V~~~~~~~~~~-----~l~s~~~d~~i   76 (326)
                      ++.++.||  |+. -+|+.||.    +..|.|-.+  .+++.+..- -.|.-+++.+-|.|+..     +|+|++ | .+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-eE
Confidence            35678888  443 46887773    455555533  344443221 25788999999999752     454443 3 69


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      |+|.+...+.....+.                ++..+                           .-..+..++++..|+.
T Consensus       124 RlWri~~ee~~~~~~~----------------~L~~~---------------------------kns~~~aPlTSFDWne  160 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQS----------------VLNNN---------------------------KNSEFCAPLTSFDWNE  160 (364)
T ss_pred             EEEeccCcCCceehhh----------------hhccC---------------------------cccccCCccccccccc
Confidence            9999864322111000                00000                           0012345677777876


Q ss_pred             CC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecCCcceEEEEe-e--
Q 020461          157 LN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYV-T--  231 (326)
Q Consensus       157 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~-~--  231 (326)
                      .. ++|.+.+-|.+..|||++++..-.......+|..+|..++|..++ ..||+.+.||.+|++|+|..+--..+. .  
T Consensus       161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~  240 (364)
T KOG0290|consen  161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS  240 (364)
T ss_pred             CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence            44 578899999999999999874422223456899999999999854 368899999999999999764322221 1  


Q ss_pred             -ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-ceEEeecCC
Q 020461          232 -ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGED  309 (326)
Q Consensus       232 -~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-~~lat~s~D  309 (326)
                       ..+.--++++++...++++...+..-+...|.|.           ...++..+++|.+.|+.++|.|.. ..++||+.|
T Consensus       241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~-----------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV-----------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             CCCcceeeccCcCCchHHhhhhcCCceEEEEEecC-----------CCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence             2356677888877777666666655555555543           234567789999999999999965 579999999


Q ss_pred             CcEEEeecCCCc
Q 020461          310 GYVRLHHFDPDY  321 (326)
Q Consensus       310 g~i~l~~~~~~~  321 (326)
                      ..+-+|+++.-.
T Consensus       310 ~qaliWDl~q~~  321 (364)
T KOG0290|consen  310 CQALIWDLQQMP  321 (364)
T ss_pred             ceEEEEeccccc
Confidence            999999997643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=130.77  Aligned_cols=222  Identities=18%  Similarity=0.329  Sum_probs=153.5

Q ss_pred             cCCCEEEeecCCCCeEEEecCCCCeeeeccC--cccce---EEEEEcCCCCeEEEEeCCCcEEEEEccC-CcEE--E-EE
Q 020461           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAV---WCCDVSRDSMTLITGSADQTAKLWNVET-GAQL--F-TF   90 (326)
Q Consensus        20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~--h~~~V---~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~--~-~~   90 (326)
                      |+.+++++.+.+.-|.+||.-+|+....+++  |...+   .+++|+|||.+|++ +....||++|+.. |.--  . ++
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhh
Confidence            7889999999999999999999998877765  55444   57999999998874 5667899999943 3211  0 01


Q ss_pred             e-----cCCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           91 N-----FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        91 ~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .     ..+-+.++.++|.+. ..++.+-.     ....   +..   .....++..+-+|.+.|+.+.|.++|+.|++|
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~-----q~~g---iy~---~~~~~pl~llggh~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYG-----QRVG---IYN---DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeeccc-----ceee---eEe---cCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence            1     122234445665443 33322210     0000   111   12345666777999999999999999999988


Q ss_pred             eC-CCcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC-cceEEEEe-eccceEEEEe
Q 020461          165 GE-DAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYV-TERPVNAVTM  240 (326)
Q Consensus       165 ~~-d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~-~~~~~~~~~~  240 (326)
                      .. |..|..||++.. ..+..+....+....-.-.+..|++..|++|+.||.|++||++. ++.+..+. ....++.+++
T Consensus       269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence            76 778999999753 33333433333333444567789999999999999999999998 55455543 3456899999


Q ss_pred             CCCCCeeEEecCC
Q 020461          241 SPLLDHVVLGGGQ  253 (326)
Q Consensus       241 s~~~~~~~~~~~~  253 (326)
                      +|....++++.|+
T Consensus       349 nP~mpilatssGq  361 (406)
T KOG2919|consen  349 NPIMPILATSSGQ  361 (406)
T ss_pred             CcccceeeeccCc
Confidence            9998888777654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=5.6e-18  Score=152.73  Aligned_cols=248  Identities=15%  Similarity=0.205  Sum_probs=171.3

Q ss_pred             eEEEEccCCC-EEEee----------cCCCCeEEEecCC--CC----eeeeccCcccceEEEEEcCCCCe----EEEEeC
Q 020461           14 TYLKYNKDGD-LLFSC----------AKDHTPTVWFADN--GE----RLGTYRGHNGAVWCCDVSRDSMT----LITGSA   72 (326)
Q Consensus        14 ~~~~~s~~~~-~l~s~----------~~d~~v~iw~~~~--~~----~~~~~~~h~~~V~~~~~~~~~~~----l~s~~~   72 (326)
                      ..++|||.+. ++++|          +.+.++.||.+..  .+    .+..+.. ...-+.++|.+.+..    ++.|..
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeecccc
Confidence            4578999887 55543          3355666775432  22    1222221 234567888876654    888889


Q ss_pred             CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461           73 DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (326)
Q Consensus        73 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (326)
                      ||.|-+||...-  +   .                                         ......+.....|.+.|..+
T Consensus        89 dG~I~ly~p~~~--~---~-----------------------------------------~~~~~~la~~~~h~G~V~gL  122 (1049)
T KOG0307|consen   89 DGNIVLYDPASI--I---A-----------------------------------------NASEEVLATKSKHTGPVLGL  122 (1049)
T ss_pred             CCceEEecchhh--c---c-----------------------------------------CcchHHHhhhcccCCceeee
Confidence            999999997531  0   0                                         00112233456788999999


Q ss_pred             EEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          153 VWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       153 ~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      .|++... .+++|++||.|.|||++.-+...... ...-...|.+++|... ...|++++.+|.+.|||+|..+.+-.+.
T Consensus       123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls  201 (1049)
T KOG0307|consen  123 DFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS  201 (1049)
T ss_pred             eccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc
Confidence            9999876 89999999999999998754433321 2234578999999865 5568899999999999999988777764


Q ss_pred             ec---cceEEEEeCCCCCeeEEe-cCCCcceeEeecccCceeeeEeeccc-ceeeeccccccCcceeEEEECCCC-ceEE
Q 020461          231 TE---RPVNAVTMSPLLDHVVLG-GGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPDG-KSFS  304 (326)
Q Consensus       231 ~~---~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~-~~la  304 (326)
                      ..   ..++.++|+|+...-++. .++|..           -.+.+||.. ...++..+.+|...|.+|.|++.. .+|+
T Consensus       202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~-----------PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  202 DTPGRMHCSVLAWHPDHATQLLVASGDDSA-----------PVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             cCCCccceeeeeeCCCCceeeeeecCCCCC-----------ceeEeecccccCCchhhhcccccceeeeccCCCCchhhh
Confidence            32   347899999998764444 333322           124455521 223455568999999999999855 8999


Q ss_pred             eecCCCcEEEeecCCC
Q 020461          305 SGGEDGYVRLHHFDPD  320 (326)
Q Consensus       305 t~s~Dg~i~l~~~~~~  320 (326)
                      |++.|++|-+|+....
T Consensus       271 SsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  271 SSGKDNRIICWNPNTG  286 (1049)
T ss_pred             cccCCCCeeEecCCCc
Confidence            9999999999998764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=4.3e-15  Score=126.16  Aligned_cols=278  Identities=13%  Similarity=0.154  Sum_probs=161.3

Q ss_pred             EEeecCCCCeEEEecCC-CC--eeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccC-CcEEE--EEecCCCcc
Q 020461           25 LFSCAKDHTPTVWFADN-GE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVET-GAQLF--TFNFDSPAR   97 (326)
Q Consensus        25 l~s~~~d~~v~iw~~~~-~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~~~--~~~~~~~~~   97 (326)
                      +++...++.|++|++.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|+++. ++...  .........
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            44457789999999964 33  444443 345567789999999887665 578899999973 43322  122222334


Q ss_pred             eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCcEEEEECC
Q 020461           98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE  176 (326)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~  176 (326)
                      .+.+.++++.+.++...    ...+.++.+..+..  .........+ ......++++|++++++ +...++.|.+||++
T Consensus        84 ~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~--~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         84 HISTDHQGRFLFSASYN----ANCVSVSPLDKDGI--PVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             EEEECCCCCEEEEEEcC----CCeEEEEEECCCCC--CCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            56667766655544321    12333333321110  0011222222 23456678999998775 55567999999997


Q ss_pred             CCcccccc---ccccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCC--c--ceEEEEee-------ccceEEEEeC
Q 020461          177 TGKLLKES---DKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDART--L--ELIKTYVT-------ERPVNAVTMS  241 (326)
Q Consensus       177 ~~~~~~~~---~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~--~--~~~~~~~~-------~~~~~~~~~s  241 (326)
                      +...+...   ............+.++|+|+++++++. +++|.+||++.  +  +.+.++..       +.....+.++
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~  236 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT  236 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence            63322110   000111234568899999999988876 89999999973  2  33333321       1123358899


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD  320 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~  320 (326)
                      |+++.++++...+. .+..++........+        .++.... ......++|+|||++|++++. +++|.+|+++.+
T Consensus       237 pdg~~lyv~~~~~~-~I~v~~i~~~~~~~~--------~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~  306 (330)
T PRK11028        237 PDGRHLYACDRTAS-LISVFSVSEDGSVLS--------FEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE  306 (330)
T ss_pred             CCCCEEEEecCCCC-eEEEEEEeCCCCeEE--------EeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence            99998888643222 233333211110000        0111110 023467999999999887765 999999999754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=1.7e-17  Score=138.47  Aligned_cols=208  Identities=19%  Similarity=0.272  Sum_probs=156.6

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeee
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  101 (326)
                      ...++.|++||.+.|-+ +.++......+|.++|.+-.|+|||.-|+++|.||.||+|.-...-.....++..++.+..|
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE
Confidence            35788899999998876 46677778899999999999999999999999999999998665444344466778888899


Q ss_pred             ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccc
Q 020461          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL  181 (326)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  181 (326)
                      .|++.-++.+.....      .+..++      ....+..++.|.+-|.++.|+|....+++||+|-..++||-.- ..+
T Consensus       154 ~p~S~~vl~c~g~h~------~IKpL~------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~L  220 (737)
T KOG1524|consen  154 APNSNSIVFCQGGHI------SIKPLA------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANL  220 (737)
T ss_pred             CCCCCceEEecCCeE------EEeecc------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-ccc
Confidence            887655444433221      111111      1234567889999999999999999999999999999999753 333


Q ss_pred             cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCccee
Q 020461          182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV  258 (326)
Q Consensus       182 ~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  258 (326)
                      .+   ...|..+|++++|.|+ ..++.+|.. ++|+=.++          ...+..++||++|.+...+.+.+...+
T Consensus       221 f~---S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~----------~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  221 FT---SAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPR----------VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             cc---CChhccceeeeeeccc-cceeeeeee-eeeecCCC----------ccceEEEEEcCCCceeeccccCceEEE
Confidence            22   3468999999999999 677777763 55532222          356788999999998887766655443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-15  Score=134.56  Aligned_cols=311  Identities=18%  Similarity=0.243  Sum_probs=193.6

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC---CeEEEEeCCCcEEEE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS---MTLITGSADQTAKLW   79 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~---~~l~s~~~d~~i~~w   79 (326)
                      |..+-|-...=....||+|++.++.+..+ .|.||...+++++..+.+|..++..+.+.|..   .++++++.||+|++|
T Consensus         9 ~~~lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw   87 (792)
T KOG1963|consen    9 PALLGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW   87 (792)
T ss_pred             eeeeccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence            44444444433456899999998877665 89999999999999999999999999987754   367899999999999


Q ss_pred             EccCCcEEEEEecCCCcceeeeec----CCeEEEEEcC---------ccc------------------------------
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAV----GDKLAVITTD---------PFM------------------------------  116 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~~------------------------------  116 (326)
                      |...++.+..+....++....+.+    .+..+.++.+         +..                              
T Consensus        88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~  167 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV  167 (792)
T ss_pred             cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence            999998887775443333222110    0101100000         000                              


Q ss_pred             ----------eeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCC--Ccccccc
Q 020461          117 ----------ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET--GKLLKES  184 (326)
Q Consensus       117 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~  184 (326)
                                .....+..+......  ........-+.|.-.+++.++||.++++++|..||.|.+|.--.  ... .+.
T Consensus       168 ~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~  244 (792)
T KOG1963|consen  168 DNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETC  244 (792)
T ss_pred             EcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-ccc
Confidence                      000000000000000  00000001123555688999999999999999999999996322  111 112


Q ss_pred             ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcc-eeEee
Q 020461          185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTT  261 (326)
Q Consensus       185 ~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~  261 (326)
                      ....-|...|++++|+++|.+|++|+..+.+-.|.+.+++  +++.  ...++..+.++|+++...+.-.+... .+...
T Consensus       245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence            2234578899999999999999999999999999999988  4543  35789999999998876654332211 11111


Q ss_pred             cccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461          262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       262 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~  323 (326)
                      |..... .+.-.......   .-+.-++-.+.++++|--+.++-.+.-|.|.+|++-.+-.-
T Consensus       323 dl~~k~-tIsgi~~~~~~---~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  323 DLEIKS-TISGIKPPTPS---TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI  380 (792)
T ss_pred             chhhhh-hccCccCCCcc---ccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence            111000 00000000000   00112344677999997788888999999999988665443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.9e-17  Score=136.18  Aligned_cols=176  Identities=21%  Similarity=0.305  Sum_probs=132.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec-cCcccceEEEEEcC--CCCeEEEEeCCCcEEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSR--DSMTLITGSADQTAKLWN   80 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~wd   80 (326)
                      ..|.||.+-|.|+.|+.+|.+|++||.|..+.|||....++++.+ .+|.+.|+++.|-|  +.+.++||+.|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            358899999999999999999999999999999998877777666 47999999999988  456899999999999999


Q ss_pred             ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-c
Q 020461           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-R  159 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  159 (326)
                      +...+.-.          .                                ...-.+....+..|..+|..++.-|.+ .
T Consensus       124 l~~~~~~~----------~--------------------------------d~~~~~~~~~~~cht~rVKria~~p~~Ph  161 (758)
T KOG1310|consen  124 LDSSKEGG----------M--------------------------------DHGMEETTRCWSCHTDRVKRIATAPNGPH  161 (758)
T ss_pred             cccccccc----------c--------------------------------ccCccchhhhhhhhhhhhhheecCCCCCc
Confidence            87532100          0                                000012333455677778788888887 5


Q ss_pred             EEEEeeCCCcEEEEECCCCccccc-------cccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecC
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKE-------SDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~  221 (326)
                      .+.++++||+|+-+|++.......       +....+..-...++.++|. ..+|+.|+.|-..++||.+
T Consensus       162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            889999999999999975322110       0001112245678888885 5578999999999999965

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=4.6e-16  Score=122.19  Aligned_cols=223  Identities=18%  Similarity=0.266  Sum_probs=162.9

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC---eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +.--.++|+|.+|++|+..+|.+-+++.|-||......   ..++++.|...|++++|+|..+.|++|+.|..-.+|...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            34456789999999999999999999999999876554   678999999999999999999999999999999999873


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      .+...                                                 .+..++.-++...+++.|+|.++.|+
T Consensus        86 ~~~~W-------------------------------------------------kptlvLlRiNrAAt~V~WsP~enkFA  116 (361)
T KOG1523|consen   86 SGGTW-------------------------------------------------KPTLVLLRINRAATCVKWSPKENKFA  116 (361)
T ss_pred             CCCee-------------------------------------------------ccceeEEEeccceeeEeecCcCceEE
Confidence            32211                                                 12223334566788899999999999


Q ss_pred             EeeCCCcEEEEECCCCccc--cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461          163 SAGEDAIVRIWDTETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (326)
                      +|+....|.||-.+....-  ... ....++..|++++|+|++-+|++||.|+..|++..-    ++.... .+    +=
T Consensus       117 VgSgar~isVcy~E~ENdWWVsKh-ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vde-kp----ap  186 (361)
T KOG1523|consen  117 VGSGARLISVCYYEQENDWWVSKH-IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDE-KP----AP  186 (361)
T ss_pred             eccCccEEEEEEEecccceehhhh-hCCccccceeeeeccCCcceecccccCcceeEEEEe----eecccc-CC----CC
Confidence            9999999999987654322  110 113567889999999999999999999999999732    222111 00    11


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      +|.++.+-.                            ++...++..-.+.|..+.|+|+|..||=.+.|+++.+=
T Consensus       187 ~pWgsk~PF----------------------------G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  187 TPWGSKMPF----------------------------GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             CCCccCCcH----------------------------HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            122211110                            11111122234689999999999999999999999883

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.73  E-value=6.5e-17  Score=130.58  Aligned_cols=158  Identities=24%  Similarity=0.375  Sum_probs=123.8

Q ss_pred             ccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccC
Q 020461           52 NGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD  130 (326)
Q Consensus        52 ~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (326)
                      ..+|..+.|.+++. .++||+.|..|++|-++.++.-.        .                                 
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------~---------------------------------   51 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------G---------------------------------   51 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------C---------------------------------
Confidence            44799999998776 99999999999999886543210        0                                 


Q ss_pred             CCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECC--------C-----CccccccccccCcceeeEEE
Q 020461          131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE--------T-----GKLLKESDKETGHKKTITSL  197 (326)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~--------~-----~~~~~~~~~~~~h~~~v~~v  197 (326)
                        ....+....+..|...|+.+.|+|+|..+++|+++|.|.+|-..        +     .+.........+|...+..+
T Consensus        52 --~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL  129 (434)
T KOG1009|consen   52 --DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDL  129 (434)
T ss_pred             --ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhh
Confidence              00112344567899999999999999999999999999999876        2     11111223345799999999


Q ss_pred             EEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecC
Q 020461          198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       198 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      +|++++.++++++.|.++++||++.+.....+. +...++.++|.|....+..-+.
T Consensus       130 ~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  130 AWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS  185 (434)
T ss_pred             hccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc
Confidence            999999999999999999999999999888774 5667999999998777665433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.5e-15  Score=136.32  Aligned_cols=290  Identities=18%  Similarity=0.220  Sum_probs=177.1

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc---ceEEEEEcC--CCCeEEEEeCCCcEEEEEcc---
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSR--DSMTLITGSADQTAKLWNVE---   82 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~---~V~~~~~~~--~~~~l~s~~~d~~i~~wd~~---   82 (326)
                      .+...+.|+|-...++++...-+|++||.+.+++...|..+..   .|+.+.+-.  |...+++|+.||.||+|+--   
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            3456788999888999999888999999999999888876543   577777643  45689999999999999642   


Q ss_pred             --CCcEEEEEecCC--------CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE-EeccCccceeE
Q 020461           83 --TGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINR  151 (326)
Q Consensus        83 --~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~  151 (326)
                        ..+.+..+..-.        ...-.+|--......++++     ...+.+|+..+..      .+. ...+....++.
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~E~------~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHKEQ------VVADIPYGSSTLVTA 1213 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEecccce------eEeecccCCCcccee
Confidence              223333332100        0001111111111222221     1223444432211      111 11122333444


Q ss_pred             EEEe-cCCcEEEEeeCCCcEEEEECCCCccccccccccCccee--eEEEEEcCCCCe-EEEEeCCCeEEEeecCCcce--
Q 020461          152 AVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSH-FLTGSLDKSAKLWDARTLEL--  225 (326)
Q Consensus       152 ~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~--v~~v~~s~~~~~-l~s~s~dg~i~iwd~~~~~~--  225 (326)
                      +.-+ +.|..++.|..||.|++||.+.......+..-..|+..  |..+.+.+.|-. |++|+.||.|++||+|....  
T Consensus      1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred             ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence            4332 23688999999999999998865442222222356655  889988887665 99999999999999998421  


Q ss_pred             EEEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeec-ccceeeeccccccCcceeEEEECCCC
Q 020461          226 IKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD-KILQEEIGGVKGHFGPINALAFNPDG  300 (326)
Q Consensus       226 ~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s~d~  300 (326)
                      ..+...    +....++..+++.+.++++++ ..  +..++.......+..++ .-.+       ...+.+.|++|+|..
T Consensus      1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~--ikIy~~~G~~l~~~k~n~~F~~-------q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL--IKIYSLSGEQLNIIKYNPGFMG-------QRIGSVSCLAFHPHR 1363 (1387)
T ss_pred             cceeeeccccCccceeeeeccCCCeeeecCc-ce--EEEEecChhhhcccccCccccc-------CcCCCcceeeecchh
Confidence            111111    234788999998877776654 32  23333222111111111 1111       123457999999999


Q ss_pred             ceEEeecCCCcEEEeecCCCc
Q 020461          301 KSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       301 ~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      .++|+|+.|.+|.|+..++.-
T Consensus      1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             HhhhhccCCceEEEeecCCcC
Confidence            999999999999999887654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=5.1e-15  Score=130.51  Aligned_cols=303  Identities=19%  Similarity=0.240  Sum_probs=183.7

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCC--C--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--G--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~--~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .|...++|.++||+++++|++..||.|.+|.--.  +  .....+.=|...|++++|+++|.+|+|||..+.+-+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3566689999999999999999999999995322  1  22345566899999999999999999999999999999999


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceE-EE-eccCccceeEEEEecCCcE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESV-LI-LKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~~  160 (326)
                      ++..+.-+..+++..+.+++++...++ ..+..+.+-..   -+++-.....+-.+. .. -+...+-.+-+.++|..+.
T Consensus       283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~---~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA---SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec---cchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            986655566778888888876554433 33322211000   000000000000000 00 1112333455778887778


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccc--------cCcceeeEEEEEcCCCCeEEEEe--------CCC--eEEEeecCC
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKE--------TGHKKTITSLAKAADGSHFLTGS--------LDK--SAKLWDART  222 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~--------~~h~~~v~~v~~s~~~~~l~s~s--------~dg--~i~iwd~~~  222 (326)
                      ++-.+..+.|.+||+.+.+.+..+...        .-++-.+++++.+..|++++|.-        .||  .+|+|-...
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            888899999999999876655443211        12345678888888899999874        243  478896543


Q ss_pred             cc----eEEEEe--eccceEEEEe-CCCCC-eeEEecCCCcceeEeecccCceee-eEeecccceeeeccccccCcceeE
Q 020461          223 LE----LIKTYV--TERPVNAVTM-SPLLD-HVVLGGGQDASAVTTTDHRAGKFE-AKFFDKILQEEIGGVKGHFGPINA  293 (326)
Q Consensus       223 ~~----~~~~~~--~~~~~~~~~~-s~~~~-~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~  293 (326)
                      ..    +...+.  ++......++ ++..+ .++.++..+...++.+........ -..|.   ...++.  .|..++++
T Consensus       440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~---c~~i~s--y~k~~i~a  514 (792)
T KOG1963|consen  440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT---CKAIGS--YHKTPITA  514 (792)
T ss_pred             CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE---Eeeeec--cccCcccc
Confidence            32    222222  2222222232 22222 344333322222222211000000 00111   122332  37889999


Q ss_pred             EEECCCCceEEeecCCCcEEEeecCC
Q 020461          294 LAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       294 v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      .+|+-||..|| +|.|++|.+|+++.
T Consensus       515 ~~fs~dGslla-~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  515 LCFSQDGSLLA-VSFDDTITIWDYDT  539 (792)
T ss_pred             hhhcCCCcEEE-EecCCEEEEecCCC
Confidence            99999996555 77899999999987

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.72  E-value=4.4e-16  Score=127.66  Aligned_cols=217  Identities=18%  Similarity=0.205  Sum_probs=156.6

Q ss_pred             CeeeeccCcccceEEEEEcCCC--CeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceece
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDS--MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS  120 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (326)
                      ......+-|.+.|++++|+|..  +.+++|+.-|.|-+||+.+.+..                                 
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------------  223 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------------  223 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------------------------
Confidence            3344556788999999999964  47888889999999999632210                                 


Q ss_pred             eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                                     ...+..+..|.++|.++.|+|.+ ..+++.+-||+|++=|++...... +............+++
T Consensus       224 ---------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~-v~s~~~d~~~fs~~d~  287 (498)
T KOG4328|consen  224 ---------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE-VLSLDTDNIWFSSLDF  287 (498)
T ss_pred             ---------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH-HhhcCccceeeeeccc
Confidence                           01223345678899999999976 588999999999999998654322 2222123345677788


Q ss_pred             cCCCCeEEEEeCCCeEEEeecCCcce-EEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc
Q 020461          200 AADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL  277 (326)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  277 (326)
                      +.+...++.+..=|...+||.++... ...+ .+...|+.++++|...+++++++.|... ..||.|.-.-..       
T Consensus       288 ~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~-kIWD~R~l~~K~-------  359 (498)
T KOG4328|consen  288 SAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA-KIWDLRQLRGKA-------  359 (498)
T ss_pred             cCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce-eeeehhhhcCCC-------
Confidence            88877788888777999999998654 2222 3456899999999999999988877642 244444321111       


Q ss_pred             eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          278 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                       .++-....|...|++..|||++..|+|.+.|..||||+-
T Consensus       360 -sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  360 -SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             -CcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence             112233468999999999999988999999999999876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=1.8e-14  Score=115.44  Aligned_cols=240  Identities=15%  Similarity=0.196  Sum_probs=166.5

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC--CcEEEEEccCCcEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAKLWNVETGAQL   87 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~   87 (326)
                      ...+..+.|..+...|..|+.||. ++++.+.-+...........|-..-|+..  +++..+.+  +.+++.+++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence            456788889999999999999987 88887665442222222223434446644  55555544  44888888888777


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      +.+.++.++.++.                                                     ++  .+.|+.+-.+
T Consensus        82 Ce~~fpt~IL~Vr-----------------------------------------------------mN--r~RLvV~Lee  106 (391)
T KOG2110|consen   82 CEIFFPTSILAVR-----------------------------------------------------MN--RKRLVVCLEE  106 (391)
T ss_pred             EEEecCCceEEEE-----------------------------------------------------Ec--cceEEEEEcc
Confidence            7766654433221                                                     11  1234555544


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--CCCeEEEeecCCcceEEEEe-eccceEEEEeCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL  244 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~  244 (326)
                      . |.|+|+++.+.+.++.....+...+.++..+..+.+++-=+  ..|.|.+||..+-+.+..+. +..++.+++|+++|
T Consensus       107 ~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G  185 (391)
T KOG2110|consen  107 S-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG  185 (391)
T ss_pred             c-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC
Confidence            4 99999999999888876667777888888888888888533  36889999999988888875 56789999999999


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc-c-cCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-G-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      ..++.+.. .+..+..+..            ..++++..++ | -...|.+++|+||+++|++.|.-++|.+|.++...
T Consensus       186 ~llATASe-KGTVIRVf~v------------~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  186 TLLATASE-KGTVIRVFSV------------PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CEEEEecc-CceEEEEEEc------------CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            87776544 3444433333            2222222211 1 12468999999999999999999999999998765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2e-15  Score=132.23  Aligned_cols=222  Identities=17%  Similarity=0.188  Sum_probs=142.9

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEEe-CCCcE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTA   76 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i   76 (326)
                      +..+..|...+...+|||||++|+.++.+   ..|++||+.+++.  +..+.+|.   ..++|+|||+.|+.++ .++.+
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcE
Confidence            35567788889999999999999887654   4699999988754  44444543   4679999999887764 68877


Q ss_pred             EEEEc--cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           77 KLWNV--ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        77 ~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      ++|.+  .+++..                                                     .+..+...+....|
T Consensus       273 ~Iy~~d~~~~~~~-----------------------------------------------------~lt~~~~~~~~~~w  299 (429)
T PRK01742        273 NIYVMGANGGTPS-----------------------------------------------------QLTSGAGNNTEPSW  299 (429)
T ss_pred             EEEEEECCCCCeE-----------------------------------------------------eeccCCCCcCCEEE
Confidence            77744  332211                                                     01112233456789


Q ss_pred             ecCCcEEEEee-CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461          155 GPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (326)
Q Consensus       155 ~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (326)
                      +|+++.|+..+ .++...||++..........   .+..  ....++|||++|+..+.++ +.+||+.+++..... ...
T Consensus       300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~  372 (429)
T PRK01742        300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-STF  372 (429)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CCC
Confidence            99999776554 57888999875322111111   2222  3568999999998888765 555999887654322 122


Q ss_pred             ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      ......|+|++..++.+...+...+           ++.++ ..+.....+.+|.+.+...+|||-
T Consensus       373 ~~~~~~~sPdG~~i~~~s~~g~~~~-----------l~~~~-~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        373 LDESPSISPNGIMIIYSSTQGLGKV-----------LQLVS-ADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCceECCCCCEEEEEEcCCCceE-----------EEEEE-CCCCceEEccCCCCCCCCcccCCC
Confidence            3456789999998887654332211           11111 123334445677888899999984

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=2.3e-14  Score=112.75  Aligned_cols=242  Identities=14%  Similarity=0.182  Sum_probs=153.1

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccce--EEEEEcCCCCeE-EEEeCC------CcEEEEEccC
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTL-ITGSAD------QTAKLWNVET   83 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~l-~s~~~d------~~i~~wd~~~   83 (326)
                      ...++|+.|-.-++.+-.+ -.|||+.+--.....-+-+.+.+  ..+-|  -.++| +.||.+      .++-+||-..
T Consensus         8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence            4558999998877766555 56999886532211111112211  11111  12343 334433      5789999777


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--CcEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTI  161 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l  161 (326)
                      ..++..+.+..++..+.+..+..+++..        ..+.++....++     +.+..+..-.++-.-++..|.  ..+|
T Consensus        85 ~~~i~el~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~-----k~l~~~et~~NPkGlC~~~~~~~k~~L  151 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNP-----KLLHVIETRSNPKGLCSLCPTSNKSLL  151 (346)
T ss_pred             CcEEEEEEeccceeeEEEcCCeEEEEec--------CeEEEEEcCCCh-----hheeeeecccCCCceEeecCCCCceEE
Confidence            8888888888999988887655444432        233333332221     111111111111112333332  2345


Q ss_pred             EE-eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe-EEEeecCCcceEEEEeeccceEEEE
Q 020461          162 IS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYVTERPVNAVT  239 (326)
Q Consensus       162 ~s-~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~  239 (326)
                      +. |-.-|.|+|-|+..-+.-.. ....+|...|.|++.+.+|..+||+|..|+ |||||.++++.++++..+.      
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p-~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------  224 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAP-SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------  224 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCc-eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------
Confidence            43 45578999999875443111 122479999999999999999999999998 7999999999887764220      


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                                                                     -.+.|.+|+|||++.+||.+|+.|+|.||.+.+
T Consensus       225 -----------------------------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  225 -----------------------------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             -----------------------------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                                                           124689999999999999999999999999988


Q ss_pred             Cceee
Q 020461          320 DYFNI  324 (326)
Q Consensus       320 ~~~~~  324 (326)
                      ...+.
T Consensus       258 ~~~~~  262 (346)
T KOG2111|consen  258 TENTE  262 (346)
T ss_pred             CCCCc
Confidence            65443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.69  E-value=1.5e-14  Score=126.73  Aligned_cols=266  Identities=14%  Similarity=0.123  Sum_probs=171.9

Q ss_pred             ceeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCe--eee----ccCcccceEEEEEcCCC--CeEEEEeCC
Q 020461            3 PILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGER--LGT----YRGHNGAVWCCDVSRDS--MTLITGSAD   73 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~--~~~----~~~h~~~V~~~~~~~~~--~~l~s~~~d   73 (326)
                      |-+.-.-..+|.|+.|+|. .++++.|..+|.|.+||+..+..  ...    ...|..+|+.+.|-.+.  .-+++++.|
T Consensus       235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD  314 (555)
T KOG1587|consen  235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD  314 (555)
T ss_pred             ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence            3333444567999999985 56888899999999999987655  222    23588889998886543  459999999


Q ss_pred             CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      |.|..|+++.-........        ..                 ..  ..             ...-......++.+.
T Consensus       315 G~i~~W~~~~l~~P~e~~~--------~~-----------------~~--~~-------------~~~~~~~~~~~t~~~  354 (555)
T KOG1587|consen  315 GSICSWDTDMLSLPVEGLL--------LE-----------------SK--KH-------------KGQQSSKAVGATSLK  354 (555)
T ss_pred             CcEeeeeccccccchhhcc--------cc-----------------cc--cc-------------cccccccccceeeEe
Confidence            9999997653221100000        00                 00  00             000001112355666


Q ss_pred             EecCC-cEEEEeeCCCcEEEEECCCCcccc-----ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC-CcceE
Q 020461          154 WGPLN-RTIISAGEDAIVRIWDTETGKLLK-----ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELI  226 (326)
Q Consensus       154 ~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~  226 (326)
                      |.+.. ..|+.|.++|.|.--.....+...     -......|.++|.++.++|=+..++..+.|-+++||... ...++
T Consensus       355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl  434 (555)
T KOG1587|consen  355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL  434 (555)
T ss_pred             eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence            76644 468889999988763332211111     112234678999999999977766665559999999877 44444


Q ss_pred             EEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce--eeeccccccCcceeEEEECCCCceE
Q 020461          227 KTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGGVKGHFGPINALAFNPDGKSF  303 (326)
Q Consensus       227 ~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~d~~~l  303 (326)
                      ..+.. ...+.+++|||.-..+++++..++             .+.+||....  .++....-+....+.+.|++.|+.|
T Consensus       435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G-------------~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l  501 (555)
T KOG1587|consen  435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDG-------------NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL  501 (555)
T ss_pred             hhhhhccceeeeeEEcCcCceEEEEEcCCC-------------ceehhhhhccccCCcccccccccccceeecCCCCcEE
Confidence            44433 334889999999888887765444             2445554322  2233333334566778889999999


Q ss_pred             EeecCCCcEEEeecCCCc
Q 020461          304 SSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       304 at~s~Dg~i~l~~~~~~~  321 (326)
                      |.|...|++.++.+.+..
T Consensus       502 avGd~~G~~~~~~l~~~l  519 (555)
T KOG1587|consen  502 AVGDANGTTHILKLSESL  519 (555)
T ss_pred             EEecCCCcEEEEEcCchh
Confidence            999999999999987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.69  E-value=1.9e-15  Score=117.23  Aligned_cols=158  Identities=25%  Similarity=0.415  Sum_probs=121.3

Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc-ccccc--cccCcceeeEEEEEcC--CCCeEEEEeCCCeEEEee
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESD--KETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWD  219 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~--~~~~h~~~v~~v~~s~--~~~~l~s~s~dg~i~iwd  219 (326)
                      +.+.|.++.|.|++..+++.. |..|.+|++..+.. ...+.  ...+|+...++-+|+|  ++..+++.+ |+++..||
T Consensus       122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D  199 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWD  199 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEE
Confidence            446899999999998888766 77899999977655 22221  2234677788889999  666666554 79999999


Q ss_pred             cCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc-ceeeeccccccCcceeEEEE
Q 020461          220 ARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAF  296 (326)
Q Consensus       220 ~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~  296 (326)
                      +|+..+...+.  +...+..+.|.|.-.+.++++|+|+.             +++|+.. +..++..+.+|..+|++|.|
T Consensus       200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-------------vriWD~R~tk~pv~el~~HsHWvW~VRf  266 (370)
T KOG1007|consen  200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-------------VRIWDTRKTKFPVQELPGHSHWVWAVRF  266 (370)
T ss_pred             ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-------------EEEEeccCCCccccccCCCceEEEEEEe
Confidence            99988777764  45679999999999988888887753             3445432 34456778899999999999


Q ss_pred             CCC-CceEEeecCCCcEEEeec
Q 020461          297 NPD-GKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       297 s~d-~~~lat~s~Dg~i~l~~~  317 (326)
                      +|. ..++.|||.|..|.||-.
T Consensus       267 n~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  267 NPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             cCccceEEEecCCCceeEEEec
Confidence            985 467899999999999754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.69  E-value=1.1e-14  Score=132.55  Aligned_cols=269  Identities=16%  Similarity=0.169  Sum_probs=171.2

Q ss_pred             eeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCe-------eeeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461            6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGER-------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~-------~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      |.-|...+..++.++. +.+++|||.||+|++|++..-+.       ..++.-....+.++...+.++.+|.++.||.|+
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence            4457777777777765 59999999999999999764322       112222355788888889999999999999999


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +.+++-......                  .+..             .+....  ...+. +         +...++...
T Consensus      1124 ~~~id~~~~~~~------------------~~~~-------------~ri~n~--~~~g~-v---------v~m~a~~~~ 1160 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKR------------------VATQ-------------VRIPNL--KKDGV-V---------VSMHAFTAI 1160 (1431)
T ss_pred             EEEccccccccc------------------eeee-------------eecccc--cCCCc-e---------EEeeccccc
Confidence            998865211000                  0000             000000  00000 1         111111111


Q ss_pred             --CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--c
Q 020461          158 --NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--R  233 (326)
Q Consensus       158 --~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~  233 (326)
                        ...++.+...+.|..||+++............ .+.|++++.+|.+..++.|+..|.+.+||+|=+.++..+.++  .
T Consensus      1161 ~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1161 VQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARA 1239 (1431)
T ss_pred             ccceeEEEEEeccceEEecchhhhhHHhhhcCcc-ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccC
Confidence              13677888889999999987655544433333 367999999999999999999999999999999999888654  4


Q ss_pred             ceEEEEeCCCCC--eeEEecCC-CcceeEeecccCceeeeEeecccceeeeccc-------cccCcceeEEEECCCCceE
Q 020461          234 PVNAVTMSPLLD--HVVLGGGQ-DASAVTTTDHRAGKFEAKFFDKILQEEIGGV-------KGHFGPINALAFNPDGKSF  303 (326)
Q Consensus       234 ~~~~~~~s~~~~--~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~v~~s~d~~~l  303 (326)
                      +++-++++|-..  ...++++. ....+..|+...+.....+|.......+...       +.+.-......+.-.+..+
T Consensus      1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ 1319 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFL 1319 (1431)
T ss_pred             CcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCcee
Confidence            677777665544  44444444 5566666666666555555544111111100       0122233344555557789


Q ss_pred             EeecCCCcEEEeecC
Q 020461          304 SSGGEDGYVRLHHFD  318 (326)
Q Consensus       304 at~s~Dg~i~l~~~~  318 (326)
                      .+|+.|..||.|+.-
T Consensus      1320 ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1320 LTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eecCCccceeeccCC
Confidence            999999999998754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=4.7e-15  Score=116.42  Aligned_cols=167  Identities=20%  Similarity=0.238  Sum_probs=123.9

Q ss_pred             eeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (326)
Q Consensus       149 i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (326)
                      -.++.|++-|.+++.|+.||+|.|||+.+...-+.+   .+|-.+|++++||+||..|+|+|.|..|++||+..|.+++.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l---saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML---SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh---hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            678999999999999999999999999887654433   57999999999999999999999999999999999999999


Q ss_pred             EeeccceEEEEeCCCCCeeEEec-CCCcceeE-------------------------eeccc-------CceeeeEeecc
Q 020461          229 YVTERPVNAVTMSPLLDHVVLGG-GQDASAVT-------------------------TTDHR-------AGKFEAKFFDK  275 (326)
Q Consensus       229 ~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~-------------------------~~d~~-------~~~~~~~~~~~  275 (326)
                      +....++..+.++|.....+++. ....-.+.                         ++|.+       ..+..+.+++.
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            98888888888888765544322 11111000                         01111       11112233343


Q ss_pred             cceeeeccccccC-cceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          276 ILQEEIGGVKGHF-GPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       276 ~~~~~~~~~~~h~-~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      .+.+.++.++-.. ..|..+.|+-.|..|+.-+.|..||.+...
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            3334444333333 568889999999999999999999997765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.8e-14  Score=114.10  Aligned_cols=251  Identities=16%  Similarity=0.198  Sum_probs=162.8

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      ..+..++|++.-.-++++..|-+||+|+.+. .+...++. -+..|.|++|-|.+ ..|+.|+..| |.+|..+......
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            3467889999766788899999999999766 55545554 35579999999965 4677777766 7899765321110


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC-C
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-D  167 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d  167 (326)
                      .     ..+..                                 ...-..+...+|| .+|+++.|++++..+++++- |
T Consensus       177 r-----~~~~~---------------------------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  177 R-----NIRMM---------------------------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             c-----ccccc---------------------------------cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence            0     00000                                 0000122233455 68999999999999988765 6


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec-CCcceEEEEeeccceEEEEeCCCCCe
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA-RTLELIKTYVTERPVNAVTMSPLLDH  246 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~s~~~~~  246 (326)
                      ..|.|||..++..+.-...   -.+.+.-+.|||||.+|.+++.|+..++|+. ++-...+-......+...+|+|+|+.
T Consensus       218 ssi~iWdpdtg~~~pL~~~---glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf  294 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLIPK---GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF  294 (445)
T ss_pred             ceEEEEcCCCCCccccccc---CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence            7899999998876543311   2356788999999999999999999999954 33333333344558899999999998


Q ss_pred             eEEec-CCCcceeEeecccCceee-------eE-eecccceeeeccccc---cCcceeEEEECCCCceEEeecC
Q 020461          247 VVLGG-GQDASAVTTTDHRAGKFE-------AK-FFDKILQEEIGGVKG---HFGPINALAFNPDGKSFSSGGE  308 (326)
Q Consensus       247 ~~~~~-~~~~~~~~~~d~~~~~~~-------~~-~~~~~~~~~~~~~~~---h~~~v~~v~~s~d~~~lat~s~  308 (326)
                      ++.+. ++.......++.+...+.       +. ..+..   ++....+   -.++..+++|.|.|.+||+-=.
T Consensus       295 LLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~---e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  295 LLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ---EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             EEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch---hhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            76553 333333333444433322       00 00100   0000111   2367899999999999997644

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.1e-14  Score=127.62  Aligned_cols=210  Identities=15%  Similarity=0.115  Sum_probs=135.3

Q ss_pred             CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeE
Q 020461           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL  107 (326)
Q Consensus        31 d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (326)
                      +..|.+||..... ...+..|...+..+.|+|||+.|+..+.+   ..|.+||+.+++.....                 
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------  244 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------  244 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------
Confidence            5789999975444 45667788889999999999999887754   36899998776432110                 


Q ss_pred             EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEE--ECCCCcccccc
Q 020461          108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIW--DTETGKLLKES  184 (326)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~w--d~~~~~~~~~~  184 (326)
                                                       ...++   .....|+|+++.|+.++ .+|.+.||  |+.+++.. .+
T Consensus       245 ---------------------------------~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~l  287 (429)
T PRK01742        245 ---------------------------------SFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QL  287 (429)
T ss_pred             ---------------------------------cCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-ee
Confidence                                             01111   12367999999887654 67776655  66555432 22


Q ss_pred             ccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCc-ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461          185 DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (326)
Q Consensus       185 ~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d  262 (326)
                         ..+...+.+..|+|||+.|+..+ .++..++|++... .....+....  ....++|+++.+++.+.. .  +..+|
T Consensus       288 ---t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-~--i~~~D  359 (429)
T PRK01742        288 ---TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-N--VVKQD  359 (429)
T ss_pred             ---ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-C--EEEEE
Confidence               23555678899999999877655 5788888876532 2222222221  356799999988776542 2  22233


Q ss_pred             ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      ...+...          .+  ...+  ....++|+|||++|+.++.+|.+++|.+
T Consensus       360 l~~g~~~----------~l--t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        360 LTSGSTE----------VL--SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCCCeE----------Ee--cCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            3222211          00  0111  2356889999999999999999988765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=3.2e-15  Score=127.57  Aligned_cols=187  Identities=17%  Similarity=0.199  Sum_probs=134.6

Q ss_pred             EccCCCEEEe--ecCCCCeEEEecCCCCeee--eccC--cccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           18 YNKDGDLLFS--CAKDHTPTVWFADNGERLG--TYRG--HNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        18 ~s~~~~~l~s--~~~d~~v~iw~~~~~~~~~--~~~~--h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      |+-+..+++.  .+..|.|-||++...-++-  .+.+  ....|+.+.|.| |.+.|+.++.||.|++|.+..+....  
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--  664 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--  664 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--
Confidence            4455556554  5567899999987543321  2222  234689999998 67789999999999999987643210  


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCc
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAI  169 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~  169 (326)
                                                                 ....+-..+..|...|+++.|+|.- ..|++++.|.+
T Consensus       665 -------------------------------------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T  701 (1012)
T KOG1445|consen  665 -------------------------------------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST  701 (1012)
T ss_pred             -------------------------------------------ccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence                                                       0112334567788899999999975 57889999999


Q ss_pred             EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce-EEEEee--ccceEEEEeCCCCCe
Q 020461          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTYVT--ERPVNAVTMSPLLDH  246 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~--~~~~~~~~~s~~~~~  246 (326)
                      |++||+.+++....   ..+|...|..++|||+|..++|.+.||+|++|+.++.+. +++-..  +....-+.|.-++..
T Consensus       702 i~lWDl~~~~~~~~---l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~  778 (1012)
T KOG1445|consen  702 IELWDLANAKLYSR---LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI  778 (1012)
T ss_pred             eeeeehhhhhhhhe---eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence            99999998776543   468999999999999999999999999999999998653 332211  222334556666666


Q ss_pred             eEEecC
Q 020461          247 VVLGGG  252 (326)
Q Consensus       247 ~~~~~~  252 (326)
                      +++.|.
T Consensus       779 viv~Gf  784 (1012)
T KOG1445|consen  779 VIVVGF  784 (1012)
T ss_pred             EEEecc
Confidence            665543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=2.4e-15  Score=128.28  Aligned_cols=190  Identities=19%  Similarity=0.265  Sum_probs=135.8

Q ss_pred             CceeEEEEcc-CCCEEEeecCCCCeEEEecCCCC-------eeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEc
Q 020461           11 RPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNV   81 (326)
Q Consensus        11 ~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~-------~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~   81 (326)
                      ..|+.+.|+| |.++|+.++.||.|+||.+..+.       ....+.+|...|.++.|+| ..+.|++++.|.+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            4678999998 67799999999999999886542       2346788999999999998 4568999999999999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .+++..                                                    ..+.+|...|..++|+|+|+.+
T Consensus       708 ~~~~~~----------------------------------------------------~~l~gHtdqIf~~AWSpdGr~~  735 (1012)
T KOG1445|consen  708 ANAKLY----------------------------------------------------SRLVGHTDQIFGIAWSPDGRRI  735 (1012)
T ss_pred             hhhhhh----------------------------------------------------heeccCcCceeEEEECCCCcce
Confidence            876432                                                    2346889999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCcc-ccccccccCcceeeEEEEEcCCCCeEEEEeCCC----eEEEeecCCcc--eEEEE--eec
Q 020461          162 ISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLE--LIKTY--VTE  232 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg----~i~iwd~~~~~--~~~~~--~~~  232 (326)
                      ++.+.||+|++|..++++. +.+-..-.+  ..---+.|.-||.++++.+.|.    .|.+||.++..  .+...  ...
T Consensus       736 AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva  813 (1012)
T KOG1445|consen  736 ATVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA  813 (1012)
T ss_pred             eeeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc
Confidence            9999999999999887643 222221112  2223455667888888887764    58889877643  22221  111


Q ss_pred             cceEEEEeCCCCCeeEEecCCC
Q 020461          233 RPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      ..+-.-.+.++.+.++++|..|
T Consensus       814 ps~LvP~YD~Ds~~lfltGKGD  835 (1012)
T KOG1445|consen  814 PSPLVPHYDYDSNVLFLTGKGD  835 (1012)
T ss_pred             CccccccccCCCceEEEecCCC
Confidence            1122223455666666665544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=1.7e-15  Score=124.51  Aligned_cols=215  Identities=17%  Similarity=0.240  Sum_probs=164.5

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      .+.+.|+.+|.+|+.|+.-|-+--+|..++.+..++.- ...|..+.|-.+.+++|.+ ....+.+||=. |..+..+.-
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk~  208 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLKR  208 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehhh
Confidence            47899999999999999999999999999988766643 4467778887777766655 44568899854 555555555


Q ss_pred             CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEE
Q 020461           93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~  172 (326)
                      ...+..++|.|...+.+..++.-+     ....++      ..|+.+..+....+.+..+..+|-+..+-+|...|+|.+
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~-----L~Y~DV------S~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl  277 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGF-----LKYQDV------STGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL  277 (545)
T ss_pred             cCchhhhcccchhheeeecccCCc-----eEEEee------chhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence            566777788877666655544321     111222      234455555566677888888999999999999999999


Q ss_pred             EECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461          173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (326)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  244 (326)
                      |..++.+.+..+   ..|.++|.++++.++|.|++|.+.|..++|||+++...+.++..+.+...+++|.-+
T Consensus       278 WSP~skePLvKi---LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  278 WSPNSKEPLVKI---LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG  346 (545)
T ss_pred             cCCCCcchHHHH---HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc
Confidence            999887776544   469999999999999999999999999999999999888888777778888887543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.63  E-value=1.9e-12  Score=110.04  Aligned_cols=236  Identities=10%  Similarity=0.109  Sum_probs=142.7

Q ss_pred             CCceeEEEEccCCCEEEee-cCCCCeEEEecC-CCCe--eeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEEEEccCC
Q 020461           10 ERPLTYLKYNKDGDLLFSC-AKDHTPTVWFAD-NGER--LGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETG   84 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~-~~d~~v~iw~~~-~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~   84 (326)
                      ......++++|++++|+++ ..++.|.+|+.. ++..  +.... ..+....++|+|+++++++++. ++.|.+|++++.
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            3456789999999988665 468899999886 3432  22222 2234567899999999888874 889999999743


Q ss_pred             c----EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCC--CceEEEeccCccceeEEEEecCC
Q 020461           85 A----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG--GESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        85 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      .    .+..+........+.+.++.+.+++....    ...+.++++........  ........  ......++|+|++
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~----~~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pdg  186 (330)
T PRK11028        113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK----EDRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPNQ  186 (330)
T ss_pred             CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC----CCEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCCC
Confidence            2    22222222234455667666555443321    12333444322110000  00011111  2335678999999


Q ss_pred             cEEEEeeC-CCcEEEEECCC--Ccc--cccccccc---CcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcc----e
Q 020461          159 RTIISAGE-DAIVRIWDTET--GKL--LKESDKET---GHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLE----L  225 (326)
Q Consensus       159 ~~l~s~~~-d~~i~~wd~~~--~~~--~~~~~~~~---~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~----~  225 (326)
                      ++++++.. +++|.+||++.  ++.  ...+....   .+......+.++|++++++++.. ++.|.+|+++...    .
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~  266 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF  266 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence            99887766 99999999973  322  21111110   11122346889999999998864 7899999986432    2


Q ss_pred             EEEEeeccceEEEEeCCCCCeeEEecC
Q 020461          226 IKTYVTERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       226 ~~~~~~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      +...........+.++|+++.++++..
T Consensus       267 ~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        267 EGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             eEEEeccccCCceEECCCCCEEEEEEc
Confidence            333333345668899999999998764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=7.9e-14  Score=108.07  Aligned_cols=155  Identities=20%  Similarity=0.356  Sum_probs=106.2

Q ss_pred             eEEEEccCCCEEEeecC---C-------CCeEEEecCC-CCeeeeccC-cccceEEEEEcCCCCeEEEE--eCCCcEEEE
Q 020461           14 TYLKYNKDGDLLFSCAK---D-------HTPTVWFADN-GERLGTYRG-HNGAVWCCDVSRDSMTLITG--SADQTAKLW   79 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~---d-------~~v~iw~~~~-~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~--~~d~~i~~w   79 (326)
                      ..+.|+|+|++|+.-..   |       +...||.+.. +..+..+.- ..++|..++|+|+++.|+..  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45789999987665332   1       2344555422 223333332 34579999999999886554  356789999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      |++ ++.+..+                                                      +...++.+.|+|+|+
T Consensus        89 d~~-~~~i~~~------------------------------------------------------~~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   89 DVK-GKKIFSF------------------------------------------------------GTQPRNTISWSPDGR  113 (194)
T ss_pred             cCc-ccEeEee------------------------------------------------------cCCCceEEEECCCCC
Confidence            985 2222111                                                      123456788999999


Q ss_pred             EEEEeeCC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC------CCeEEEeecCCcceEEEE
Q 020461          160 TIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTY  229 (326)
Q Consensus       160 ~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~  229 (326)
                      ++++++.+   |.|.+||.++.+.+....    | ..++.++|+|||++|++++.      |..++||+.. |+.+.+.
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE----H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccc----c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            99988743   669999999877765442    3 34789999999999999874      7889999985 5555543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.7e-13  Score=104.09  Aligned_cols=158  Identities=12%  Similarity=0.173  Sum_probs=114.3

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      .|+++...|..+-++.++.|+.+.-||+++|+...+++||+..|.++.--.....++||+.||++|+||.++++.+..+.
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            47899999988777777799999999999999999999999999999874444468899999999999999998876553


Q ss_pred             cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEecCCcEEEEeeCCCcE
Q 020461           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAGEDAIV  170 (326)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~d~~i  170 (326)
                      .-.....                                           ++-| ..+|.+++.+.  .++++|+ ...+
T Consensus       196 ~yk~~~~-------------------------------------------lRp~~g~wigala~~e--dWlvCGg-Gp~l  229 (325)
T KOG0649|consen  196 PYKNPNL-------------------------------------------LRPDWGKWIGALAVNE--DWLVCGG-GPKL  229 (325)
T ss_pred             cccChhh-------------------------------------------cCcccCceeEEEeccC--ceEEecC-CCce
Confidence            2110000                                           0001 12344444433  3666655 4458


Q ss_pred             EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      .+|.+++.++...+.    ..+.+..+.|..|  .+++++....+.-|.+.
T Consensus       230 slwhLrsse~t~vfp----ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  230 SLWHLRSSESTCVFP----IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             eEEeccCCCceEEEe----cccceeEeeeecc--eEEEeccccceeeeeec
Confidence            999999887765543    3355666776554  68888888888888764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.62  E-value=1.1e-15  Score=133.93  Aligned_cols=213  Identities=24%  Similarity=0.374  Sum_probs=149.9

Q ss_pred             eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (326)
                      ..+.+|..+|.|..|...|.++++|+.|..+|||.+.++.+.                                      
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--------------------------------------  225 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--------------------------------------  225 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--------------------------------------
Confidence            345799999999999999999999999999999998765432                                      


Q ss_pred             eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe
Q 020461          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH  205 (326)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~  205 (326)
                                    ..++||.+.|+.++.+...-.+++++.|..|++|.+.++.++..+   .+|.+.|++++|+|-.  
T Consensus       226 --------------As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL---rghtgavtaiafsP~~--  286 (1113)
T KOG0644|consen  226 --------------ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL---RGHTGAVTAIAFSPRA--  286 (1113)
T ss_pred             --------------ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH---hccccceeeeccCccc--
Confidence                          235688889999999888888999999999999999999887655   4899999999999964  


Q ss_pred             EEEEeCCCeEEEeecCCcceEEEEe------eccceEEEEeCCCCCeeEEecCC--------------CcceeEee---c
Q 020461          206 FLTGSLDKSAKLWDARTLELIKTYV------TERPVNAVTMSPLLDHVVLGGGQ--------------DASAVTTT---D  262 (326)
Q Consensus       206 l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~--------------~~~~~~~~---d  262 (326)
                        +.+.||++++||.+ .++.....      ....+..+.+-..+..+.++..+              +...+.+.   |
T Consensus       287 --sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd  363 (1113)
T KOG0644|consen  287 --SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSD  363 (1113)
T ss_pred             --cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccc
Confidence              78889999999988 11111110      00112222222222222211100              00000000   0


Q ss_pred             c------cCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEEeecCCCcEEEeecC
Q 020461          263 H------RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       263 ~------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~lat~s~Dg~i~l~~~~  318 (326)
                      .      .........|+...+...+.+.+|...+..+.++| +.....+++.||...||+.=
T Consensus       364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~  426 (1113)
T KOG0644|consen  364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW  426 (1113)
T ss_pred             ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence            0      01122345577777778888899999999999998 45566889999999999863

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2e-14  Score=119.00  Aligned_cols=290  Identities=20%  Similarity=0.257  Sum_probs=188.5

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCC--CCeEEEEeCCCcEEEEEc
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRD--SMTLITGSADQTAKLWNV   81 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~wd~   81 (326)
                      .|.+|.+.|..+.|...|..|+++|.|..|.+||...+..+..|. +|...|..-.|-|.  .+.+++++.||.+++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            467899999999999999999999999999999999998877765 68888887778773  467999999999998766


Q ss_pred             cCCcEE----EEEecCCCcceeeeecCCeEEEEE--cCccceeceeeeeeeeccCCCCCCCceEEEeccCcc---ceeEE
Q 020461           82 ETGAQL----FTFNFDSPARSVDFAVGDKLAVIT--TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG---RINRA  152 (326)
Q Consensus        82 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~  152 (326)
                      ......    ....+..++..+...++....+.+  .+.....      .++..+.   .......-+.+..   ..+.+
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~------~Dlr~~~---pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFH------IDLRQDV---PAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceee------eeeccCC---ccceeeeeccCCccceeeeeE
Confidence            432221    122345566555555544322221  1111100      0111111   0111222222333   45678


Q ss_pred             EEecCCc-EEEEeeCCCcEEEEECCCCccc------ccccc---ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          153 VWGPLNR-TIISAGEDAIVRIWDTETGKLL------KESDK---ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       153 ~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~------~~~~~---~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      +.+|... .+++++.|..+++||.+.-...      ..+.+   .......|++++++-++.-|++...|-.|+++....
T Consensus       288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM  367 (559)
T ss_pred             ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence            8888765 8899999999999998643221      11100   012245699999999989999999999999995433


Q ss_pred             cc------------eEEE-Ee---eccceEEEEe-CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc
Q 020461          223 LE------------LIKT-YV---TERPVNAVTM-SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (326)
Q Consensus       223 ~~------------~~~~-~~---~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  285 (326)
                      +.            .++. +.   ....|.++.| -|-.+. +++|+ |..-            +-+|+....+.+.-+.
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGS-DCGh------------IFiW~K~t~eii~~Me  433 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGS-DCGH------------IFIWDKKTGEIIRFME  433 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecC-ccce------------EEEEecchhHHHHHhh
Confidence            21            2222 11   1123555554 344333 33433 3332            3456666666666666


Q ss_pred             ccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          286 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       286 ~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +-..-|+|+.-+|--..||+++-|..|+||-=
T Consensus       434 gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  434 GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             cccceEeccCCCCCCchhhccCCccceeeecC
Confidence            66668999999999999999999999999964

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.62  E-value=1.3e-13  Score=120.98  Aligned_cols=230  Identities=18%  Similarity=0.210  Sum_probs=151.8

Q ss_pred             CCCeEEEecCCCC-eeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461           31 DHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (326)
Q Consensus        31 d~~v~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (326)
                      ++.+.+|++++.. ....+ .-..+|.++.|+|. ..+++.|..+|.|-+||++.+....       ...          
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~----------  282 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSG----------  282 (555)
T ss_pred             CceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------Ccc----------
Confidence            3478999998773 22333 33668999999995 4577888899999999997654310       000          


Q ss_pred             EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC--cEEEEeeCCCcEEEEECCCCcccccccc
Q 020461          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTETGKLLKESDK  186 (326)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~  186 (326)
                                                   .......|..++..+.|..+.  .-|++++.||.|..|+++.-....+...
T Consensus       283 -----------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~  333 (555)
T KOG1587|consen  283 -----------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL  333 (555)
T ss_pred             -----------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence                                         001112455666667775543  3489999999999998765333211111


Q ss_pred             c---------cCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCC---cc-----eEEE-EeeccceEEEEeCCCCCee
Q 020461          187 E---------TGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART---LE-----LIKT-YVTERPVNAVTMSPLLDHV  247 (326)
Q Consensus       187 ~---------~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~---~~-----~~~~-~~~~~~~~~~~~s~~~~~~  247 (326)
                      .         ......++++.|.+ +...++.|+.+|.|.--+.+.   ..     .... ..+..++.++.++|.+..+
T Consensus       334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~  413 (555)
T KOG1587|consen  334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN  413 (555)
T ss_pred             cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccce
Confidence            0         11234578888876 456799999999988744332   22     1111 1345789999999999988


Q ss_pred             EEecCCCcceeEeecccCceeeeEeeccc-ceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCCCc
Q 020461          248 VLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +++++++.              +++|... ...++-.+..+...|++++|||... .||++..||.|.||++..+-
T Consensus       414 fls~gDW~--------------vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  414 FLSVGDWT--------------VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             eeeeccce--------------eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence            88877543              3444443 2233333445667799999999765 68999999999999987653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=2.6e-12  Score=101.32  Aligned_cols=245  Identities=16%  Similarity=0.240  Sum_probs=154.0

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-CcEEEEEecC-CCcceeeeecCC-eEE
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNFD-SPARSVDFAVGD-KLA  108 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~-~~~~~~~~~~~~-~~~  108 (326)
                      ..|.|||=....++.++ ....+|.++.+.++  .++.. .+++|.+|...+ .+.+..+.-. .|..-+.+.+.. +.+
T Consensus        75 NkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            57889996666677666 35789999998765  45444 456899999874 4555554432 233333343322 222


Q ss_pred             EEEcC-ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc-EEEEECCCCcccccccc
Q 020461          109 VITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIWDTETGKLLKESDK  186 (326)
Q Consensus       109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~  186 (326)
                      ++.+. ..    +.+.+..++....    .....+..|.+.|.+++.+.+|..+||+|..|+ |||||..+|+.+.++..
T Consensus       151 LafPg~k~----GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  151 LAFPGFKT----GQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             EEcCCCcc----ceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            22221 11    2222333322211    134677899999999999999999999999997 88999999999988876


Q ss_pred             ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCc
Q 020461          187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG  266 (326)
Q Consensus       187 ~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~  266 (326)
                      ... ...+.+++|||+..+|+++|..|++.|+.++.......     ...+..+-   + +++                 
T Consensus       223 G~d-~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~-----~~SSl~~~---~-~~l-----------------  275 (346)
T KOG2111|consen  223 GVD-RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTED-----ESSSLSFK---R-LVL-----------------  275 (346)
T ss_pred             CCc-hheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcc-----cccccccc---c-ccc-----------------
Confidence            544 47799999999999999999999999998875332211     00010000   0 000                 


Q ss_pred             eeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          267 KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                         .++++.  +..+..++--.++..-++|-.+.+.++..+.||.-+=+.|+++
T Consensus       276 ---pky~~S--~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  276 ---PKYFSS--EWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             ---chhccc--ceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence               000000  0001111112346677888777677777788888877777776

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.61  E-value=7.3e-14  Score=108.63  Aligned_cols=200  Identities=18%  Similarity=0.236  Sum_probs=129.8

Q ss_pred             ecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCe---eeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461            8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (326)
Q Consensus         8 ~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~---~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~   82 (326)
                      .+.+++++..|+. +.++|.++|-|.+..|||++++..   ...+-+|..+|..++|...+ +.|++.|.||.+|++|++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            3557888889986 677999999999999999998733   45677999999999998865 479999999999999998


Q ss_pred             CCcEEEEE-ecCC---CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           83 TGAQLFTF-NFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        83 ~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      .-+....+ ..+.   +..-+.+...+.-..+.   +..-...+.+.++.     ....++..+++|.+.|+.++|.|..
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymAT---f~~dS~~V~iLDiR-----~P~tpva~L~~H~a~VNgIaWaPhS  299 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMAT---FAMDSNKVVILDIR-----VPCTPVARLRNHQASVNGIAWAPHS  299 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhh---hhcCCceEEEEEec-----CCCcceehhhcCcccccceEecCCC
Confidence            65433222 2111   22222332222111000   00001111111221     1235677889999999999999976


Q ss_pred             -cEEEEeeCCCcEEEEECCCCcc--ccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEE
Q 020461          159 -RTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAK  216 (326)
Q Consensus       159 -~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~  216 (326)
                       ..|+|+|+|..+.+||+.+...  ...-.......++|..+.|++. +..++.+. ++.+.
T Consensus       300 ~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkle  360 (364)
T KOG0290|consen  300 SSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLE  360 (364)
T ss_pred             CceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeee
Confidence             5899999999999999975322  1111111224578999999965 44455444 34443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3.6e-13  Score=113.89  Aligned_cols=278  Identities=18%  Similarity=0.224  Sum_probs=175.8

Q ss_pred             ecCCceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCccc--ceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            8 GHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNG--AVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      .|....+.+..+|||+|+ ++|----.|++||+.+-.+  .|.-|..  .|...-++.|=...+--..|.+|.+..-- |
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence            356677899999999975 5566778999999876543  4555543  35545455553334444567777654321 1


Q ss_pred             cEEEEEecCCCcceeeee-cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           85 AQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                       .-+....+...+.+.++ +...+.+++....        +.++.-    ..|.-+..++...+.++++..++-..+|++
T Consensus       126 -~hy~~RIP~~GRDm~y~~~scDly~~gsg~e--------vYRlNL----EqGrfL~P~~~~~~~lN~v~in~~hgLla~  192 (703)
T KOG2321|consen  126 -RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSE--------VYRLNL----EQGRFLNPFETDSGELNVVSINEEHGLLAC  192 (703)
T ss_pred             -eeeeeecCcCCccccccCCCccEEEeecCcc--------eEEEEc----cccccccccccccccceeeeecCccceEEe
Confidence             11122222333333333 2222222222211        111110    123333444555678999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccc---cCcce-----eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee--cc
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKE---TGHKK-----TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ER  233 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~---~~h~~-----~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~  233 (326)
                      |+.+|.|..||.++...+..+...   ..|.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.+  +.
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~  272 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL  272 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc
Confidence            999999999999987766554321   12333     499999999999999999999999999998877655443  35


Q ss_pred             ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                      ++..+.|.+.+..         ..+.++|.+.    +++|+...++....+.. ...++.+++-|++.++.++-+++.+.
T Consensus       273 pi~~l~~~~~~~q---------~~v~S~Dk~~----~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~  338 (703)
T KOG2321|consen  273 PIKKLDWQDTDQQ---------NKVVSMDKRI----LKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMH  338 (703)
T ss_pred             ceeeecccccCCC---------ceEEecchHH----hhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcce
Confidence            6777777665222         1122334332    46777777666554433 34599999999999999999888775


Q ss_pred             Ee
Q 020461          314 LH  315 (326)
Q Consensus       314 l~  315 (326)
                      -+
T Consensus       339 ~y  340 (703)
T KOG2321|consen  339 TY  340 (703)
T ss_pred             eE
Confidence            54

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=2.1e-12  Score=103.74  Aligned_cols=197  Identities=11%  Similarity=0.150  Sum_probs=135.1

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      |.-+-||.+---|++..+-..+++.+.+.+..+-.+ -...+|.++.+.  .++|+.+-.+. |.+||+++.+.+..+..
T Consensus        49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~-~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t  124 (391)
T KOG2110|consen   49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI-FFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIET  124 (391)
T ss_pred             EEEeecccceeEEEecCCCceEEEEEcccCceEEEE-ecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhc
Confidence            444556654333333323334777777666544333 235678888775  45777777765 99999999998877654


Q ss_pred             C--CCcceeeeecCC--eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461           93 D--SPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (326)
Q Consensus        93 ~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  168 (326)
                      .  .+...+.+++..  ...+.....   ....+.+++.      ....++..+..|.+.+.+++|+|+|.+|||+++.|
T Consensus       125 ~~~n~~gl~AlS~n~~n~ylAyp~s~---t~GdV~l~d~------~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG  195 (391)
T KOG2110|consen  125 TPPNPKGLCALSPNNANCYLAYPGST---TSGDVVLFDT------INLQPVNTINAHKGPLAALAFSPDGTLLATASEKG  195 (391)
T ss_pred             cCCCccceEeeccCCCCceEEecCCC---CCceEEEEEc------ccceeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence            3  333344444332  233332111   0122222222      22356778889999999999999999999999999


Q ss_pred             c-EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461          169 I-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       169 ~-i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (326)
                      + ||++.+.+|+.+.+++...- ...|.+++|++++++|++.|..++|+++.+...
T Consensus       196 TVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  196 TVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            8 78999999999888776443 567899999999999999999999999998754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.60  E-value=8.9e-15  Score=112.14  Aligned_cols=159  Identities=16%  Similarity=0.250  Sum_probs=116.5

Q ss_pred             CceeEEEEcc-CCC--EEEeecCCCCeEEEecCCCCee----------eeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461           11 RPLTYLKYNK-DGD--LLFSCAKDHTPTVWFADNGERL----------GTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus        11 ~~i~~~~~s~-~~~--~l~s~~~d~~v~iw~~~~~~~~----------~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      +.+.|..+.. .++  +|++|-.+|.|.+||+.++..+          .....|.++|.++++.+....=++++.+..+-
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            3455554332 233  5677889999999999998443          34467999999999987655567888888888


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +|+++........  .                          ..                    .+-.+-.+.-+.+-||
T Consensus       231 ~~Sl~~s~gslq~--~--------------------------~e--------------------~~lknpGv~gvrIRpD  262 (323)
T KOG0322|consen  231 MYSLNHSTGSLQI--R--------------------------KE--------------------ITLKNPGVSGVRIRPD  262 (323)
T ss_pred             eeeeccccCcccc--c--------------------------ce--------------------EEecCCCccceEEccC
Confidence            8887532110000  0                          00                    0001123445667899


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      ++.++|+|+|++||+|.-++...+..+   .-|+..|.+++|+|+...+|+++.|+.|-+|++
T Consensus       263 ~KIlATAGWD~RiRVyswrtl~pLAVL---kyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  263 GKILATAGWDHRIRVYSWRTLNPLAVL---KYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CcEEeecccCCcEEEEEeccCCchhhh---hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999988776554   358999999999999999999999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.60  E-value=2.2e-14  Score=120.17  Aligned_cols=224  Identities=20%  Similarity=0.309  Sum_probs=141.4

Q ss_pred             CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeee----e-----cCCeEEEEEcCccceece
Q 020461           50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF----A-----VGDKLAVITTDPFMELNS  120 (326)
Q Consensus        50 ~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~  120 (326)
                      .|...|.|+.|+.....+.+++.+..++-||+.+.........+..+....+    +     -.+.+++++.++-+.+-+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            4666777899988777776666665555566654332111111100000000    0     012333333332211110


Q ss_pred             eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc--------------
Q 020461          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK--------------  186 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------------  186 (326)
                                   ..+.--.....|.+.+.+-.|+|+|.-|+++|+||.|++|... |-+..++..              
T Consensus        92 -------------k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S  157 (737)
T KOG1524|consen   92 -------------KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNS  157 (737)
T ss_pred             -------------ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCC
Confidence                         0112223456788999999999999999999999999999742 211111100              


Q ss_pred             ------------------------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461          187 ------------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       187 ------------------------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~  242 (326)
                                              =.+|.+.|.++.|++....+++|++|-..++||-....+..+-.++.++.+++|.|
T Consensus       158 ~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np  237 (737)
T KOG1524|consen  158 NSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNP  237 (737)
T ss_pred             CceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecc
Confidence                                    02588999999999999999999999999999987555555555678999999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      + ..++++.- .              -.++ .          +...+-|..++|||||..++.|...|.+-+
T Consensus       238 d-~~~~v~S~-n--------------t~R~-~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  238 E-KDYLLWSY-N--------------TARF-S----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             c-cceeeeee-e--------------eeee-c----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            8 33333211 0              0111 1          123467999999999999999999998866

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=7.6e-13  Score=115.83  Aligned_cols=224  Identities=12%  Similarity=0.098  Sum_probs=137.5

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeec---CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCc--EE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCA---KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQT--AK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~---~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~--i~   77 (326)
                      ..+..+...+...+|||||+.|+..+   .+..+.+|++.+++... +....+.+..+.|+|||+.|+.. +.++.  |.
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            34455667789999999999888654   34578899998875432 22223334568999999977654 44553  67


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +||+++++.....                                                     .+...+....|+|+
T Consensus       271 ~~d~~tg~~~~lt-----------------------------------------------------~~~~~~~~~~wSPD  297 (429)
T PRK03629        271 VMDLASGQIRQVT-----------------------------------------------------DGRSNNTEPTWFPD  297 (429)
T ss_pred             EEECCCCCEEEcc-----------------------------------------------------CCCCCcCceEECCC
Confidence            7787665432110                                                     01122345689999


Q ss_pred             CcEEEEeeCC-CcEEEE--ECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEeecCCcceEEEEee
Q 020461          158 NRTIISAGED-AIVRIW--DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       158 ~~~l~s~~~d-~~i~~w--d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~  231 (326)
                      ++.|+..+.+ +...+|  |+.+++.. .+.   .+........|+|||++++..+.+   ..|.+||+.+++. ..+..
T Consensus       298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~  372 (429)
T PRK03629        298 SQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD  372 (429)
T ss_pred             CCEEEEEeCCCCCceEEEEECCCCCeE-Eee---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC
Confidence            9988766654 444555  66655432 221   122335578899999998876653   3588899988764 33332


Q ss_pred             ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461          232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (326)
Q Consensus       232 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  298 (326)
                      ........|+|++..++.++......           .+..++. .+.....+.+|.+.+...+|+|
T Consensus       373 ~~~~~~p~~SpDG~~i~~~s~~~~~~-----------~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        373 TFLDETPSIAPNGTMVIYSSSQGMGS-----------VLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCCCCceECCCCCEEEEEEcCCCce-----------EEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            22334678999999887765433211           1222222 1222233456777888899987

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.60  E-value=6.4e-14  Score=120.43  Aligned_cols=231  Identities=18%  Similarity=0.250  Sum_probs=155.9

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec-cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      +..|+||++-|+|++|+.||++++||+.|..|.+|+-+-.   ..+ ..|...|.|+.|+|-.+.|+|++... .-+|..
T Consensus        46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~  121 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP  121 (1081)
T ss_pred             ccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence            4678999999999999999999999999999999975422   222 26999999999999999999999754 468876


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC---
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---  158 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  158 (326)
                      .... +........+.++.|..++.+.+.+-.     ++.+.+..    ........+...-|.+++|.+++|+|..   
T Consensus       122 ~qK~-V~K~kss~R~~~CsWtnDGqylalG~~-----nGTIsiRN----k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G  191 (1081)
T KOG1538|consen  122 EQKS-VSKHKSSSRIICCSWTNDGQYLALGMF-----NGTISIRN----KNGEEKVKIERPGGSNSPIWSICWNPSSGEG  191 (1081)
T ss_pred             hhhh-HHhhhhheeEEEeeecCCCcEEEEecc-----CceEEeec----CCCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence            5422 222222344566777766665554321     22222221    1111111122223678899999999964   


Q ss_pred             --cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccce
Q 020461          159 --RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV  235 (326)
Q Consensus       159 --~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~  235 (326)
                        ..++...+..++..+.+. |+.+..-.   .-.-...|+.+.++|.+++.|+.|+.++++-.+ |-.+.++. ....+
T Consensus       192 ~~di~aV~DW~qTLSFy~Ls-G~~Igk~r---~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WI  266 (1081)
T KOG1538|consen  192 RNDILAVADWGQTLSFYQLS-GKQIGKDR---ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWI  266 (1081)
T ss_pred             ccceEEEEeccceeEEEEec-ceeecccc---cCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeE
Confidence              367777777777777664 33332111   112345789999999999999999999999654 33333332 34578


Q ss_pred             EEEEeCCCCCeeEEecC
Q 020461          236 NAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~  252 (326)
                      ..++..|++..++++--
T Consensus       267 WtV~~~PNsQ~v~~GCq  283 (1081)
T KOG1538|consen  267 WTVQAKPNSQYVVVGCQ  283 (1081)
T ss_pred             EEEEEccCCceEEEEEc
Confidence            89999999888776543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.3e-13  Score=116.78  Aligned_cols=191  Identities=14%  Similarity=0.070  Sum_probs=124.4

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecC---CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCC--cE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA   76 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~--~i   76 (326)
                      |..+..|...+...+|+|||+.|+.++.   +..|++|++.+++... +..+.+...+++|+|||+.++ +.+.++  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            4456667778899999999999888763   3469999998887543 333444556789999998664 556665  47


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      .+||+.+++....                                                     ..+........|+|
T Consensus       275 y~~d~~~g~~~~l-----------------------------------------------------t~~~~~~~~~~~sp  301 (433)
T PRK04922        275 YVMDLGSRQLTRL-----------------------------------------------------TNHFGIDTEPTWAP  301 (433)
T ss_pred             EEEECCCCCeEEC-----------------------------------------------------ccCCCCccceEECC
Confidence            7777766543210                                                     00111123457999


Q ss_pred             CCcEEEEeeC-CCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC---eEEEeecCCcceEEEEe
Q 020461          157 LNRTIISAGE-DAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV  230 (326)
Q Consensus       157 ~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~  230 (326)
                      +++.|+..++ ++.  |.++|+.+++... +.   .+.......+|+|||++++..+.++   .|.+||+.+++.. .+.
T Consensus       302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt---~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt  376 (433)
T PRK04922        302 DGKSIYFTSDRGGRPQIYRVAASGGSAER-LT---FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT  376 (433)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCeEE-ee---cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence            9998876654 444  6666766654322 21   1122344689999999998765443   6999999887654 333


Q ss_pred             eccceEEEEeCCCCCeeEEecC
Q 020461          231 TERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       231 ~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      .........|+|+++.++....
T Consensus       377 ~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        377 PGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CCCCCCCceECCCCCEEEEEEe
Confidence            3323445689999998776543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=9.3e-12  Score=106.04  Aligned_cols=281  Identities=18%  Similarity=0.149  Sum_probs=153.0

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEEEEec
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      ..+.|+|||+++++++.|+.|.++|+.+.+.+.+++.-.. -.++++++||++++++. .++.+.++|.++.+.+..+..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            4578999999999999999999999999999998876443 46799999999988776 689999999999888776642


Q ss_pred             CC--------CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE-
Q 020461           93 DS--------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-  163 (326)
Q Consensus        93 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-  163 (326)
                      ..        ....+..++.....++....      .-+++.+....  . ..................|+|++++++. 
T Consensus       119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------~~~I~vVdy~d--~-~~~~~~~i~~g~~~~D~~~dpdgry~~va  189 (369)
T PF02239_consen  119 GGMPVDGPESRVAAIVASPGRPEFVVNLKD------TGEIWVVDYSD--P-KNLKVTTIKVGRFPHDGGFDPDGRYFLVA  189 (369)
T ss_dssp             -EE-TTTS---EEEEEE-SSSSEEEEEETT------TTEEEEEETTT--S-SCEEEEEEE--TTEEEEEE-TTSSEEEEE
T ss_pred             ccccccccCCCceeEEecCCCCEEEEEEcc------CCeEEEEEecc--c-cccceeeecccccccccccCcccceeeec
Confidence            21        11222223333322221110      11122221110  0 1111111122334567889999998765 


Q ss_pred             eeCCCcEEEEECCCCcccccccc-ccCcceeeEEE---------EEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461          164 AGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSL---------AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v---------~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (326)
                      ...+..|-++|.++++....+.. ...|......+         .....+...++.-....+.+||.++.+.++++....
T Consensus       190 ~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G  269 (369)
T PF02239_consen  190 ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG  269 (369)
T ss_dssp             EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred             ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence            45677899999988776543321 11232222222         112233344344444567789999999999998776


Q ss_pred             ceEEEEeCCCCCeeEEec--CCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeEEEECCCCceEEeecCC-
Q 020461          234 PVNAVTMSPLLDHVVLGG--GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGKSFSSGGED-  309 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~d~~~lat~s~D-  309 (326)
                      ..-.+.-+|++.++++..  +.+...+...|.+.            .+.+..+... ...+..+.|++||+++-.+..+ 
T Consensus       270 ~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t------------l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~  337 (369)
T PF02239_consen  270 GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT------------LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG  337 (369)
T ss_dssp             SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG------------TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred             CcceeecCCCCccEEeeccCCCCCceEEEEECcC------------cceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence            668888899999998861  12233344444332            2222222211 1248899999999976555443 


Q ss_pred             -CcEEEee
Q 020461          310 -GYVRLHH  316 (326)
Q Consensus       310 -g~i~l~~  316 (326)
                       +.|.+++
T Consensus       338 ~~~i~v~D  345 (369)
T PF02239_consen  338 NGAIVVYD  345 (369)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence             3588843

...

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=3.7e-13  Score=108.93  Aligned_cols=161  Identities=15%  Similarity=0.198  Sum_probs=120.1

Q ss_pred             eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        45 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (326)
                      .+.+.+|.+.|+++.|+.++++|++|+.|..+++|++...-...                                    
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------   92 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK------------------------------------   92 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc------------------------------------
Confidence            34467999999999999999999999999999999986421000                                    


Q ss_pred             eeeccCCCCCCCceEEEec-cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461          125 KRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  203 (326)
                                ..+++.... .|.+.|.++.|+.-+..+++|+.+++|.+-|+++.+.+..... ....+.|..+..+|..
T Consensus        93 ----------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~D  161 (609)
T KOG4227|consen   93 ----------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANE-NNNRGDVYHMDQHPTD  161 (609)
T ss_pred             ----------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecc-cCcccceeecccCCCC
Confidence                      001122222 3447899999999889999999999999999998877655432 2345689999999999


Q ss_pred             CeEEEEeCCCeEEEeecCCcc-eEEEEe---eccceEEEEeCCCCCeeEEecC
Q 020461          204 SHFLTGSLDKSAKLWDARTLE-LIKTYV---TERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~~~-~~~~~~---~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      +.|++.+.++.|.+||.+... ...-+.   .+.....+-|+|....+++...
T Consensus       162 N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~  214 (609)
T KOG4227|consen  162 NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS  214 (609)
T ss_pred             ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence            999999999999999988643 222221   2344567778888877766543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1e-12  Score=115.15  Aligned_cols=191  Identities=16%  Similarity=0.101  Sum_probs=124.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~i~~w   79 (326)
                      ..+..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++... +....+.+.+.+|+||++.|+ +.+.++..++|
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence            3445677788899999999998876643   458999999887543 333345567889999998775 66778887777


Q ss_pred             EccC--CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           80 NVET--GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        80 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      .++.  ++. .                                                    .+..+.+......|+|+
T Consensus       268 ~~d~~~~~~-~----------------------------------------------------~lt~~~~~~~~~~wSpD  294 (427)
T PRK02889        268 TVNADGSGL-R----------------------------------------------------RLTQSSGIDTEPFFSPD  294 (427)
T ss_pred             EEECCCCCc-E----------------------------------------------------ECCCCCCCCcCeEEcCC
Confidence            6532  110 0                                                    00111122334679999


Q ss_pred             CcEEEEeeC-CCcEEEEEC--CCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC---eEEEeecCCcceEEEEee
Q 020461          158 NRTIISAGE-DAIVRIWDT--ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVT  231 (326)
Q Consensus       158 ~~~l~s~~~-d~~i~~wd~--~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~  231 (326)
                      |+.|+..++ ++...+|.+  .+++.. .+..   +.......+|+|||++++..+.++   .|.+||+.+++.. .+..
T Consensus       295 G~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~---~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~  369 (427)
T PRK02889        295 GRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF---TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD  369 (427)
T ss_pred             CCEEEEEecCCCCcEEEEEECCCCceE-EEec---CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC
Confidence            998876554 566677755  333321 1111   112234578999999998777654   6999999887653 3333


Q ss_pred             ccceEEEEeCCCCCeeEEecCC
Q 020461          232 ERPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       232 ~~~~~~~~~s~~~~~~~~~~~~  253 (326)
                      ........|+|+++.++.+...
T Consensus       370 ~~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        370 TTRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             CCCccCceECCCCCEEEEEEec
Confidence            3334677899999988876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.56  E-value=4.4e-13  Score=112.50  Aligned_cols=197  Identities=19%  Similarity=0.236  Sum_probs=124.1

Q ss_pred             cCCCEEEeecCCCCeEEEecCCCCeeeecc--C--cccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYR--G--HNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDS   94 (326)
Q Consensus        20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~--h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~   94 (326)
                      |++--|..+=.-|.|.+.+....+..+.+.  .  .+..|+|+.|-|.+. .++.+-.+|.+-+||..-.   +...  .
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---~~~t--~  257 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---CGAT--A  257 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc---ccCC--C
Confidence            445455556666777776654422211121  1  235799999988544 5666778898888886210   0000  0


Q ss_pred             CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE
Q 020461           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (326)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd  174 (326)
                      + ....+..++.+.+.....           ...+       .++..+.-..+.|+..+|+|+|++|++.+.||.+||+|
T Consensus       258 p-~~~~~k~~~~f~i~t~ks-----------k~~r-------NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~  318 (636)
T KOG2394|consen  258 P-SYQALKDGDQFAILTSKS-----------KKTR-------NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD  318 (636)
T ss_pred             C-cccccCCCCeeEEeeeec-----------cccC-------CccceeEeccccccceeEcCCCceEEEEecCceEEEee
Confidence            0 000111122222211000           0000       12223333345889999999999999999999999999


Q ss_pred             CCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCC
Q 020461          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL  243 (326)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~  243 (326)
                      ..+.+++..+..   -=+...|++|||||+++++|++|..|.+|.+...+.+..-. +...|+.++|.|.
T Consensus       319 fdt~eLlg~mkS---YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy  385 (636)
T KOG2394|consen  319 FDTQELLGVMKS---YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY  385 (636)
T ss_pred             ccHHHHHHHHHh---hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc
Confidence            988766543321   12468999999999999999999999999998877766543 4567999999874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=4.3e-12  Score=111.68  Aligned_cols=217  Identities=15%  Similarity=0.097  Sum_probs=133.4

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (326)
                      ..|.+||.. +.....+..|...+...+|+|||+.|+..+.   +..|.+||+.+++.....                  
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~------------------  242 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG------------------  242 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee------------------
Confidence            367777864 4444556678889999999999998877653   467889998776532110                  


Q ss_pred             EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCc--EEEEECCCCccccccc
Q 020461          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAI--VRIWDTETGKLLKESD  185 (326)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~  185 (326)
                                                         .+.+.+....|+|+|+.|+ +.+.++.  |.+||+.+++... + 
T Consensus       243 -----------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-L-  285 (435)
T PRK05137        243 -----------------------------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-L-  285 (435)
T ss_pred             -----------------------------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-c-
Confidence                                               0112234467999998765 5555555  7777888765432 2 


Q ss_pred             cccCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461          186 KETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (326)
Q Consensus       186 ~~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d  262 (326)
                        ..+........|+|||..++..+. +|  .|+++|+.+++..+-...........|+|+++.++......+       
T Consensus       286 --t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-------  356 (435)
T PRK05137        286 --TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-------  356 (435)
T ss_pred             --cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-------
Confidence              234445677899999999887764 33  688889876654332222334556789999998876543221       


Q ss_pred             ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC-Cc---EEEeecCC
Q 020461          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-GY---VRLHHFDP  319 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D-g~---i~l~~~~~  319 (326)
                          .+.+.+++...... ..+. ....+....|+|||++|+..+.+ +.   -+||.++.
T Consensus       357 ----~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        357 ----QFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             ----ceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence                11233333211111 1111 11246789999999998765543 22   35555543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=1.7e-12  Score=105.89  Aligned_cols=155  Identities=18%  Similarity=0.258  Sum_probs=104.9

Q ss_pred             eEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       150 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      ..++++++|..+++++.||++|+|+..+...+.   ....|...|.++.|+|||+.|++-+.| ..++|+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            568899999999999999999999966544333   234688999999999999999999999 8999999999766665


Q ss_pred             eec---cceEEEEeCCCC--CeeEEec-CCCcceeEeecccCceeeeEeecccceee-eccccccCcceeEEEECCCCce
Q 020461          230 VTE---RPVNAVTMSPLL--DHVVLGG-GQDASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPDGKS  302 (326)
Q Consensus       230 ~~~---~~~~~~~~s~~~--~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~s~d~~~  302 (326)
                      .+.   .....+-|+.+.  +.+.+++ -.+...       ...+++..|+....-+ ...+.. ...|.+++.|+||++
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~-------v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf  295 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG-------VRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKF  295 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCc-------eeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcE
Confidence            421   123344444433  2222221 111111       1223444454421111 111222 246899999999999


Q ss_pred             EEeecCCCcEEEee
Q 020461          303 FSSGGEDGYVRLHH  316 (326)
Q Consensus       303 lat~s~Dg~i~l~~  316 (326)
                      +|.|+.||.|-|+.
T Consensus       296 ~AlGT~dGsVai~~  309 (398)
T KOG0771|consen  296 LALGTMDGSVAIYD  309 (398)
T ss_pred             EEEeccCCcEEEEE
Confidence            99999999998843

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=9.7e-12  Score=108.89  Aligned_cols=215  Identities=10%  Similarity=-0.020  Sum_probs=129.1

Q ss_pred             CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE
Q 020461           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (326)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (326)
                      .+.+||....+. ..+..+...+...+|+|||+.|+..+.   +..+.+||+.+++......                  
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------  240 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------  240 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC------------------
Confidence            677778765443 334445678999999999998876542   3457778877654321100                  


Q ss_pred             EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe-eCCC--cEEEEECCCCcccccccc
Q 020461          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDA--IVRIWDTETGKLLKESDK  186 (326)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d~--~i~~wd~~~~~~~~~~~~  186 (326)
                                                      .+++   .....|+|+|+.|+.. +.++  .|.+||+.+++... +. 
T Consensus       241 --------------------------------~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt-  283 (429)
T PRK03629        241 --------------------------------FPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT-  283 (429)
T ss_pred             --------------------------------CCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc-
Confidence                                            0111   2235799999877754 4444  58899998776433 21 


Q ss_pred             ccCcceeeEEEEEcCCCCeEEEEeCC-Ce--EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecc
Q 020461          187 ETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (326)
Q Consensus       187 ~~~h~~~v~~v~~s~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~  263 (326)
                        .+...+....|+|||+.|+..+.+ +.  |..+|+.+++..+-...........++|+++.++.....++.       
T Consensus       284 --~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~-------  354 (429)
T PRK03629        284 --DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ-------  354 (429)
T ss_pred             --CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC-------
Confidence              233456788999999998877754 44  555577666543222222344568899999988776543321       


Q ss_pred             cCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCc---EEEeecC
Q 020461          264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY---VRLHHFD  318 (326)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~---i~l~~~~  318 (326)
                          ..+..++...+.. ..+.. ........|+|||++|+.++.|+.   +.+++++
T Consensus       355 ----~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        355 ----QHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             ----ceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence                1233333222211 11111 112346789999999999998875   4555543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=1.8e-12  Score=100.55  Aligned_cols=152  Identities=18%  Similarity=0.328  Sum_probs=100.3

Q ss_pred             EEEecCCcEEEEeeC----------CCcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEE--EeCCCeEEEe
Q 020461          152 AVWGPLNRTIISAGE----------DAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLW  218 (326)
Q Consensus       152 ~~~~~~~~~l~s~~~----------d~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s--~s~dg~i~iw  218 (326)
                      +.|+|.|..|+.-..          -+...+|.++.. .....+.  ....++|.+++|+|+|..|+.  |..++.|.+|
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~--l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE--LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee--ccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            557777765543222          123455555322 2222221  223456999999999998754  4467899999


Q ss_pred             ecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461          219 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (326)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  298 (326)
                      |++ ++.+.++. ....+.+.|+|.|+.+++++....           ...+.+|+....+.+.... | ..+..++|||
T Consensus        89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~-----------~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsP  153 (194)
T PF08662_consen   89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNL-----------NGDLEFWDVRKKKKISTFE-H-SDATDVEWSP  153 (194)
T ss_pred             cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCC-----------CcEEEEEECCCCEEeeccc-c-CcEEEEEEcC
Confidence            997 66666664 457889999999999988763221           0134556655555544432 3 3578999999


Q ss_pred             CCceEEeecC------CCcEEEeecCCC
Q 020461          299 DGKSFSSGGE------DGYVRLHHFDPD  320 (326)
Q Consensus       299 d~~~lat~s~------Dg~i~l~~~~~~  320 (326)
                      ||++|+|++.      |..++||++.=.
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEecCe
Confidence            9999998874      889999998644

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=6.3e-13  Score=104.80  Aligned_cols=162  Identities=19%  Similarity=0.256  Sum_probs=123.7

Q ss_pred             ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-c
Q 020461          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-E  224 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-~  224 (326)
                      ..+|++.+|+++...++.+-+...|.|+................|...|+.++|+|..+.|++++.|..-++|....+ +
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            467999999999999999999999999998766644333344578999999999999999999999999999998433 2


Q ss_pred             eEEE---EeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461          225 LIKT---YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK  301 (326)
Q Consensus       225 ~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~  301 (326)
                      -..+   +...+...++.|+|..+.++++++.....+..+.....-     |-..     +--+.+.++|++++|+|++-
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-----WVsK-----hikkPirStv~sldWhpnnV  159 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-----WVSK-----HIKKPIRSTVTSLDWHPNNV  159 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----ehhh-----hhCCccccceeeeeccCCcc
Confidence            2222   245678999999999999998877655544444322111     0000     01134678899999999999


Q ss_pred             eEEeecCCCcEEEeec
Q 020461          302 SFSSGGEDGYVRLHHF  317 (326)
Q Consensus       302 ~lat~s~Dg~i~l~~~  317 (326)
                      +||+||.|+..|+|+.
T Consensus       160 LlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSA  175 (361)
T ss_pred             eecccccCcceeEEEE
Confidence            9999999999999874

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1e-12  Score=104.47  Aligned_cols=193  Identities=17%  Similarity=0.240  Sum_probs=131.3

Q ss_pred             CeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        65 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      ..++++.+.|+|++||..+++.+..+..                                                    
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~----------------------------------------------------   68 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG----------------------------------------------------   68 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC----------------------------------------------------
Confidence            3577888899999999988765544432                                                    


Q ss_pred             CccceeEEEEec--CCcEEEEeeCCCcEEEEECCCCccccccccccCcc-eeeEEEEEcCCCCeEEEEeC----CCeEEE
Q 020461          145 PQGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTGSL----DKSAKL  217 (326)
Q Consensus       145 ~~~~i~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~s~----dg~i~i  217 (326)
                      +...++.+.|..  ....+.+|+.||+|++||+++......+... .++ .+-++++..-.+..+++|+.    |-.+.+
T Consensus        69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~l  147 (376)
T KOG1188|consen   69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQSGTPFICLDLNCKKNIIACGTELTRSDASVVL  147 (376)
T ss_pred             CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCCCCcceEeeccCcCCeEEeccccccCceEEEE
Confidence            222222333322  2346889999999999999976655443322 333 56677777667777888764    677999


Q ss_pred             eecCCcce-EEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461          218 WDARTLEL-IKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (326)
Q Consensus       218 wd~~~~~~-~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  294 (326)
                      ||+|+.+. +..+.  +...|..+.|+|....++++|+.|+. +..+|....         .....+...-.|..-|.++
T Consensus       148 wDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d---------~EeDaL~~viN~~sSI~~i  217 (376)
T KOG1188|consen  148 WDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKD---------NEEDALLHVINHGSSIHLI  217 (376)
T ss_pred             EEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCC---------cchhhHHHhhcccceeeee
Confidence            99998665 66653  55689999999999999998887763 333332211         1112222334566679999


Q ss_pred             EECCCC-ceEEeecCCCcEEEeecCCC
Q 020461          295 AFNPDG-KSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       295 ~~s~d~-~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .|..++ +.+.+-+.+++..+|.+...
T Consensus       218 gw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  218 GWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             eeecCCcceEEEEEccCceeEEEccCC
Confidence            998665 45888899999999988653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=8.3e-14  Score=116.78  Aligned_cols=78  Identities=23%  Similarity=0.414  Sum_probs=71.5

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      +..|...+|||||++||+.|.||.+||+|..+.+++..++..=+...|++|||||+++++|+.|.-|.||.+...+.+
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence            357889999999999999999999999999999998888888889999999999999999999999999998765543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.52  E-value=2.1e-12  Score=102.88  Aligned_cols=200  Identities=20%  Similarity=0.320  Sum_probs=140.7

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCC----CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      ..+++++.+.++..+|+.+-.+|++.-+.+..    ...++....|...|..+-|+...+.+++++.|+.+.---.+.+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            35678999999999999999999999986643    34456677899999999999888999999999887533334444


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      .+-.+.+..+.....+...   .+..++....    +...++..    .....+..+++|.+.+.++.|.|..+.+.+|.
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~---~~fvGd~~gq----vt~lr~~~----~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~  216 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDAL---YAFVGDHSGQ----ITMLKLEQ----NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA  216 (404)
T ss_pred             cccceEeeccCCCCceeeE---EEEecccccc----eEEEEEee----cCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence            3333322222211111111   1111111111    11111111    23357788999999999999999999999999


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      .|..+.+||+--++-..  -...+|...|..+...+--..+++++.||.|-+||++.
T Consensus       217 ~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  217 SDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            99999999986433221  12358999999999888888999999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=8.2e-12  Score=109.78  Aligned_cols=217  Identities=15%  Similarity=0.072  Sum_probs=131.9

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (326)
                      ..|.+||.. +.....+..+...+.+.+|+||++.|+..+.+   ..|.+||+.+++......                 
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-----------------  245 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-----------------  245 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-----------------
Confidence            457888875 44444566677789999999999988877643   358888887665321100                 


Q ss_pred             EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCC--cEEEEECCCCccccccc
Q 020461          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESD  185 (326)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~  185 (326)
                                                          ..+......|+|+++.++ +.+.++  .|.+||+.+++... +.
T Consensus       246 ------------------------------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt  288 (433)
T PRK04922        246 ------------------------------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT  288 (433)
T ss_pred             ------------------------------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc
Confidence                                                001122457899998665 445555  59999998776432 22


Q ss_pred             cccCcceeeEEEEEcCCCCeEEEEeC-CCe--EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461          186 KETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (326)
Q Consensus       186 ~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d  262 (326)
                         .+.......+|+|||+.|+..+. +|.  |+++|+.+++..+-..........+|+|+++.++.....+.       
T Consensus       289 ---~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~-------  358 (433)
T PRK04922        289 ---NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG-------  358 (433)
T ss_pred             ---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-------
Confidence               33344567899999999887764 444  66677776654332222233446899999998877543321       


Q ss_pred             ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC-CcEEEeecCC
Q 020461          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-GYVRLHHFDP  319 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D-g~i~l~~~~~  319 (326)
                          .+.+.+|+...++.. .+. +........|+|||++++..+.+ +.-+||.++.
T Consensus       359 ----~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        359 ----QYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             ----ceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence                123344443322221 111 22234567999999987766653 4444544443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.9e-11  Score=107.55  Aligned_cols=224  Identities=11%  Similarity=0.065  Sum_probs=134.8

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecC---CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCc--E
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQT--A   76 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~--i   76 (326)
                      +..+..|...+.+.+|||||+.|+..+.   +..|.+|++.+++.. .+..+.+.+...+|+|||+.| ++.+.++.  |
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            3556778888999999999998887653   578999999888753 344566677889999999876 46666666  5


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      .+||+.+++...............|++++..++...+....  ..+.....      .++.. ..+..+.+.+....|+|
T Consensus       273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~--~~Iy~~d~------~g~~~-~~lt~~~~~~~~~~~Sp  343 (435)
T PRK05137        273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGS--PQLYVMNA------DGSNP-RRISFGGGRYSTPVWSP  343 (435)
T ss_pred             EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCC--CeEEEEEC------CCCCe-EEeecCCCcccCeEECC
Confidence            56688777654332233334456777766544433321110  11111111      11111 22222234456688999


Q ss_pred             CCcEEEEeeCC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC------CeEEEeecCCcceEE
Q 020461          157 LNRTIISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDARTLELIK  227 (326)
Q Consensus       157 ~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d------g~i~iwd~~~~~~~~  227 (326)
                      +++.|+....+   ..|.+||+..+.. ..+.    ....+....|+|||+.|+..+.+      ..+.+.|+..+.. +
T Consensus       344 dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~  417 (435)
T PRK05137        344 RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-R  417 (435)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCce-Eecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-E
Confidence            99988766543   3688889765432 2222    11235678999999988765543      2577778765443 3


Q ss_pred             EEeeccceEEEEeCC
Q 020461          228 TYVTERPVNAVTMSP  242 (326)
Q Consensus       228 ~~~~~~~~~~~~~s~  242 (326)
                      .+..+..+...+|+|
T Consensus       418 ~l~~~~~~~~p~Wsp  432 (435)
T PRK05137        418 EVPTPGDASDPAWSP  432 (435)
T ss_pred             EccCCCCccCcccCC
Confidence            333233334444544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.50  E-value=8.1e-14  Score=114.87  Aligned_cols=194  Identities=19%  Similarity=0.322  Sum_probs=150.2

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCC
Q 020461           56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG  135 (326)
Q Consensus        56 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (326)
                      ..+.++.+|+.++.++.-|.+..+|..++.+.+.+.....+..+.|...+.+++++...+..+..             ..
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-------------~~  199 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-------------NN  199 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-------------CC
Confidence            45678889999999999999999999999998888877777777777777766666554433211             12


Q ss_pred             CceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeE
Q 020461          136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA  215 (326)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i  215 (326)
                      |..+..++.| ..+..+.|-|.--+|++++..|.++.-|+.+|+.+..+..   -.+.+..+.-.|-...+-+|-..|+|
T Consensus       200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~G~~~vm~qNP~NaVih~GhsnGtV  275 (545)
T KOG1272|consen  200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---GAGRTDVMKQNPYNAVIHLGHSNGTV  275 (545)
T ss_pred             CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---cCCccchhhcCCccceEEEcCCCceE
Confidence            3444445544 4678888989878889999999999999999998876643   23556777778887888899999999


Q ss_pred             EEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461          216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (326)
Q Consensus       216 ~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  295 (326)
                      .+|...+.+++.                                                       .+..|.++|.+|+
T Consensus       276 SlWSP~skePLv-------------------------------------------------------KiLcH~g~V~siA  300 (545)
T KOG1272|consen  276 SLWSPNSKEPLV-------------------------------------------------------KILCHRGPVSSIA  300 (545)
T ss_pred             EecCCCCcchHH-------------------------------------------------------HHHhcCCCcceEE
Confidence            999877655432                                                       2334788889999


Q ss_pred             ECCCCceEEeecCCCcEEEeecCCCc
Q 020461          296 FNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       296 ~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +.++|.|+||.+.|..++||+++.-+
T Consensus       301 v~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  301 VDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             ECCCCcEEeecccccceeEeeecccc
Confidence            99999999999999999999888765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=3e-13  Score=113.85  Aligned_cols=161  Identities=23%  Similarity=0.350  Sum_probs=119.1

Q ss_pred             eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        45 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (326)
                      .+++.||++.|+|++|+.+|.+|++||.|-.+.|||....+.+..+                                  
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI----------------------------------   88 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI----------------------------------   88 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee----------------------------------
Confidence            4567899999999999999999999999999999998655443322                                  


Q ss_pred             eeeccCCCCCCCceEEEeccCccceeEEEEecC--CcEEEEeeCCCcEEEEECCCCcc-------ccccccccCcceeeE
Q 020461          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL-------LKESDKETGHKKTIT  195 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~-------~~~~~~~~~h~~~v~  195 (326)
                                       -.||...|.++.|-|.  .+.+++|..|..|+++|+...+.       ..+..--..|...|.
T Consensus        89 -----------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK  151 (758)
T KOG1310|consen   89 -----------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK  151 (758)
T ss_pred             -----------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhh
Confidence                             2367777888888774  46889999999999999974211       111111235777888


Q ss_pred             EEEEcCCC-CeEEEEeCCCeEEEeecCCcc-eEEEE------e--e--ccceEEEEeCCCCCeeEEecCCCcc
Q 020461          196 SLAKAADG-SHFLTGSLDKSAKLWDARTLE-LIKTY------V--T--ERPVNAVTMSPLLDHVVLGGGQDAS  256 (326)
Q Consensus       196 ~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~------~--~--~~~~~~~~~s~~~~~~~~~~~~~~~  256 (326)
                      .++..|++ ..+.++++||+|+-+|++... |-...      .  .  -....++.++|.....++.|+.+..
T Consensus       152 ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpf  224 (758)
T KOG1310|consen  152 RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPF  224 (758)
T ss_pred             heecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCch
Confidence            88888988 678899999999999998631 11111      0  0  1235688999998888877777653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.49  E-value=4.5e-11  Score=94.95  Aligned_cols=284  Identities=18%  Similarity=0.241  Sum_probs=180.4

Q ss_pred             CceeEEEEccCCCEEEe-ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s-~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      +.|..+-|+.|..++++ ...|+.|.+|++...+....+.+-.+.+..++|||||+. |.+...|-.|-+|.+.+-+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            34667888888876654 567889999999999888888888889999999999965 5666688999999998766543


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCc----ccee--------cee-----eeeeeeccCCCCCCCceEEEec--------
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDP----FMEL--------NSA-----IHVKRIARDPADQGGESVLILK--------  143 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~--------  143 (326)
                      .--.......+.+.++.++++.....    +..+        -..     +....+...+   .+..+.++.        
T Consensus       129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP---dg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP---DGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC---CCcEEEEecchhhheee
Confidence            32222334556677777666554321    0000        000     0000000000   011111111        


Q ss_pred             -cC-ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc---------------------------------cc
Q 020461          144 -GP-QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK---------------------------------ET  188 (326)
Q Consensus       144 -~~-~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---------------------------------~~  188 (326)
                       -+ .-.+..+.|+|-+++++.|+.|+.+|+.+--+-+.+.++..                                 ..
T Consensus       206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence             11 13567789999999999999999888753211111100000                                 00


Q ss_pred             ------------------------------CcceeeEEEEEcCCCCeEEEEeCC--CeEEEeecCCcceEEEEeeccceE
Q 020461          189 ------------------------------GHKKTITSLAKAADGSHFLTGSLD--KSAKLWDARTLELIKTYVTERPVN  236 (326)
Q Consensus       189 ------------------------------~h~~~v~~v~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~  236 (326)
                                                    .....+-.++|++|..+++|-...  ..+-+||++..+...-+....++.
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir  365 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR  365 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcccee
Confidence                                          001234557899999888886643  568999999877655555667899


Q ss_pred             EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV  312 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i  312 (326)
                      +..|+|....++++.|..              .+++|...-...++. .+..-.|..+.|.-+|..++-++.|..-
T Consensus       366 af~WdP~~prL~vctg~s--------------rLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  366 AFEWDPGRPRLVVCTGKS--------------RLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             EEEeCCCCceEEEEcCCc--------------eEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceE
Confidence            999999998888775533              345555433222222 2222479999999999999999999753

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.48  E-value=2.6e-13  Score=107.47  Aligned_cols=218  Identities=13%  Similarity=0.214  Sum_probs=143.2

Q ss_pred             EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLFTFNFD   93 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~   93 (326)
                      -.+|||+|+++|+++.- .+.|-|.++-+..+.|.. -..|.-+.|..|..+ |..+..|+.|++|++...+-.+++   
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI---   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI---   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe---
Confidence            45899999999999776 677778777666554433 334555778877765 555668889999998765432221   


Q ss_pred             CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEEeeCCCcEEE
Q 020461           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRI  172 (326)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~  172 (326)
                                                                       ...+.++.++.|||+|+. +.+..-+-+|.+
T Consensus        88 -------------------------------------------------deg~agls~~~WSPdgrhiL~tseF~lriTV  118 (447)
T KOG4497|consen   88 -------------------------------------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITV  118 (447)
T ss_pred             -------------------------------------------------ccCCCcceeeeECCCcceEeeeecceeEEEE
Confidence                                                             122345677899999965 557777999999


Q ss_pred             EECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe---EEEeecCCcceEEEEeec-cceEEEEeCCCCCeeE
Q 020461          173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS---AKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVV  248 (326)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~---i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~  248 (326)
                      |.+.+.+.....    -....+..+++.+||++.+-++.-..   +.|..-+.-+.++++..+ .....+.|+|+++.++
T Consensus       119 WSL~t~~~~~~~----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la  194 (447)
T KOG4497|consen  119 WSLNTQKGYLLP----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA  194 (447)
T ss_pred             EEeccceeEEec----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE
Confidence            999886654321    11244688899999998887775322   222212222333444322 3567888999988766


Q ss_pred             EecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461          249 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      +           +|+-. .+.+..|...            -.+..++|+|.+++||.|+.|+.+|+
T Consensus       195 V-----------wd~~L-eykv~aYe~~------------lG~k~v~wsP~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  195 V-----------WDNVL-EYKVYAYERG------------LGLKFVEWSPCNQFLAVGSYDQMLRV  236 (447)
T ss_pred             E-----------ecchh-hheeeeeeec------------cceeEEEeccccceEEeeccchhhhh
Confidence            4           22110 0111111111            24788999999999999999999998

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=6.8e-13  Score=110.14  Aligned_cols=260  Identities=16%  Similarity=0.199  Sum_probs=161.6

Q ss_pred             eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC--Ccceeeeec---CCeEEEEEcCccceece
Q 020461           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSVDFAV---GDKLAVITTDPFMELNS  120 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~  120 (326)
                      ..+..|.+.|+.+.|...|..|+++|.|..|.+||...+.....+....  -+...+|.|   ...++..+.++-...  
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~--  213 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV--  213 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee--
Confidence            4567899999999999999999999999999999998887766553211  112222332   112222222211111  


Q ss_pred             eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcce---eeEE
Q 020461          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITS  196 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~---~v~~  196 (326)
                             .........+....+..|.++|..++.-|+.. .|++++.|+.++-+|+++......+.....+..   ...+
T Consensus       214 -------s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~  286 (559)
T KOG1334|consen  214 -------SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT  286 (559)
T ss_pred             -------eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence                   11111122233445567889999999988764 788999999999999987655433322122333   4677


Q ss_pred             EEEcCCCC-eEEEEeCCCeEEEeecCCcceE------EEEe-------eccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461          197 LAKAADGS-HFLTGSLDKSAKLWDARTLELI------KTYV-------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (326)
Q Consensus       197 v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~------~~~~-------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d  262 (326)
                      ++..|... .+++|+.|..+++||.+.....      .++.       ....|.+++++-.+..++++-.+...++..-+
T Consensus       287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence            78888655 7999999999999998764322      2221       12357889998776666655443332222111


Q ss_pred             ccCceeeeEeeccc--ceeeeccccccC--cceeEEEE-CCCCceEEeecCCCcEEEeec
Q 020461          263 HRAGKFEAKFFDKI--LQEEIGGVKGHF--GPINALAF-NPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       263 ~~~~~~~~~~~~~~--~~~~~~~~~~h~--~~v~~v~~-s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      ...+.   ......  .+.....++||.  .+|..+-| -|...|+++||.=|.|-||+=
T Consensus       367 ~~~G~---~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K  423 (559)
T KOG1334|consen  367 MGDGS---EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK  423 (559)
T ss_pred             cccCC---CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence            11110   000000  011122377884  46888887 588999999999999999973

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=5.5e-12  Score=113.94  Aligned_cols=227  Identities=15%  Similarity=0.212  Sum_probs=143.9

Q ss_pred             ceeEEEEcc--CCCEEEeecCCCCeEEEec-CC----CCeeeeccCcc-------cceEEEEEcCCCCeEEEEeCCCcEE
Q 020461           12 PLTYLKYNK--DGDLLFSCAKDHTPTVWFA-DN----GERLGTYRGHN-------GAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus        12 ~i~~~~~s~--~~~~l~s~~~d~~v~iw~~-~~----~~~~~~~~~h~-------~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      .|+.+.+-.  |..++++|+.||.||||+- .+    .+.+..+.+-+       +.=.-++|-....+|+++|.-..|+
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence            456666553  4568999999999999943 22    34454443211       1113357777667788888789999


Q ss_pred             EEEccCCcEEEEEecCCC--ccee--eeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc--eeE
Q 020461           78 LWNVETGAQLFTFNFDSP--ARSV--DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INR  151 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~  151 (326)
                      +||.........+.....  +..+  +...++.+++...++..      ++.+....+   ....+...+.|+..  |..
T Consensus      1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsv------RvyD~R~a~---~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSV------RVYDRRMAP---PDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             EEecccceeEeecccCCCccceeecccccCCceEEEeecCCce------EEeecccCC---ccccceeecccCCccccee
Confidence            999987766655543321  1111  12234455554444332      333222211   12456777888877  999


Q ss_pred             EEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcc---eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461          152 AVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHK---KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (326)
Q Consensus       152 ~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (326)
                      +.+.+.|- .|++|+.||.|++||++.......+. ...|.   ...+++..++....+|+|+. +.|+||++.. +.+.
T Consensus      1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~ 1338 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLN 1338 (1387)
T ss_pred             EEeecCCCcceeeeccCCeEEEEecccCcccccce-eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhc
Confidence            99988765 59999999999999998743222221 12232   35899999999999999999 9999999863 3223


Q ss_pred             EEe--------eccceEEEEeCCCCCeeEEe
Q 020461          228 TYV--------TERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       228 ~~~--------~~~~~~~~~~s~~~~~~~~~  250 (326)
                      .+.        ....+.|++|+|.--.++++
T Consensus      1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             ccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            221        12357899999975444443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=3.4e-11  Score=105.59  Aligned_cols=217  Identities=14%  Similarity=0.116  Sum_probs=126.6

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (326)
                      ..+.++|. ++.....+..+...+.+.+|+||++.|+..+.+   ..|.+||+.+++......                 
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-----------------  237 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-----------------  237 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------------
Confidence            34556665 444444556777889999999999988776643   348888987765421100                 


Q ss_pred             EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCcEEEEEC--CCCccccccc
Q 020461          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDT--ETGKLLKESD  185 (326)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~--~~~~~~~~~~  185 (326)
                                                          ..+......|+|+++.|+ +.+.++...||.+  ..+. ...+.
T Consensus       238 ------------------------------------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt  280 (427)
T PRK02889        238 ------------------------------------FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT  280 (427)
T ss_pred             ------------------------------------CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC
Confidence                                                011223467999998776 5677887666654  4433 22222


Q ss_pred             cccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeec--CCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461          186 KETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDA--RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (326)
Q Consensus       186 ~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d  262 (326)
                         .+........|+|||+.|+..+. +|...+|.+  .+++..+...........+|+|+++.++.+...++       
T Consensus       281 ---~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g-------  350 (427)
T PRK02889        281 ---QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG-------  350 (427)
T ss_pred             ---CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC-------
Confidence               23444567789999998886654 456666654  44433222112222335789999998876544322       


Q ss_pred             ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC-cEEEeecCC
Q 020461          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG-YVRLHHFDP  319 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg-~i~l~~~~~  319 (326)
                          .+.+.+|+...++... +.. ........|+|||++|+.++.++ .-.++-++.
T Consensus       351 ----~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        351 ----AFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             ----cEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence                1233444433222111 111 12346789999999987777544 434544443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=1.4e-09  Score=92.74  Aligned_cols=262  Identities=16%  Similarity=0.202  Sum_probs=153.3

Q ss_pred             CceeEEEEccCCCEEEeecC----CCCeEEEecCCC--Ce--eeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEc
Q 020461           11 RPLTYLKYNKDGDLLFSCAK----DHTPTVWFADNG--ER--LGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNV   81 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~----d~~v~iw~~~~~--~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~   81 (326)
                      .....++++|++++|.++..    ++.|..|.+...  .+  +.........-..++++|++++|+++. .+|+|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34578999999999988776    568888877653  32  233332223344588999999999888 5899999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .....+.....              .  .      .....      ..++.          +.......++.++|+++++
T Consensus       117 ~~~g~l~~~~~--------------~--~------~~~g~------g~~~~----------rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen  117 DDDGSLGEVVQ--------------T--V------RHEGS------GPNPD----------RQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             CTTSEEEEEEE--------------E--E------ESEEE------ESSTT----------TTSSTCEEEEEE-TTSSEE
T ss_pred             cCCcccceeee--------------e--c------ccCCC------CCccc----------ccccccceeEEECCCCCEE
Confidence            76322211100              0  0      00000      00000          0112345678899999977


Q ss_pred             EEe-eCCCcEEEEECCCCc--cccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecC--Cc--ceEEEEee--
Q 020461          162 ISA-GEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR--TL--ELIKTYVT--  231 (326)
Q Consensus       162 ~s~-~~d~~i~~wd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~--~~--~~~~~~~~--  231 (326)
                      ++. -....|.+|++....  +..............+.+.|+|+++++.... .+++|.++++.  ++  +.++....  
T Consensus       159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~  238 (345)
T PF10282_consen  159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP  238 (345)
T ss_dssp             EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred             EEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence            654 345579999987654  2111111123345678999999999887665 57889999888  33  22232221  


Q ss_pred             -----ccceEEEEeCCCCCeeEEecC-CCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461          232 -----ERPVNAVTMSPLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS  305 (326)
Q Consensus       232 -----~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat  305 (326)
                           ......+.++|+++.++++.. .+...+...|...+.+..          +..+......-+.++++|+|++|++
T Consensus       239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~----------~~~~~~~G~~Pr~~~~s~~g~~l~V  308 (345)
T PF10282_consen  239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL----------VQTVPTGGKFPRHFAFSPDGRYLYV  308 (345)
T ss_dssp             TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE----------EEEEEESSSSEEEEEE-TTSSEEEE
T ss_pred             ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE----------EEEEeCCCCCccEEEEeCCCCEEEE
Confidence                 114678999999999888653 333333333333333221          1111111123688999999999876


Q ss_pred             ec-CCCcEEEeecCCC
Q 020461          306 GG-EDGYVRLHHFDPD  320 (326)
Q Consensus       306 ~s-~Dg~i~l~~~~~~  320 (326)
                      +. .++.|.+|+++++
T Consensus       309 a~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  309 ANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             EETTTTEEEEEEEETT
T ss_pred             EecCCCeEEEEEEeCC
Confidence            65 5789999998765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=4e-11  Score=97.19  Aligned_cols=245  Identities=20%  Similarity=0.298  Sum_probs=160.9

Q ss_pred             CceeEEEEccCC--CEEEeecCCCCeEEEecCCCCeeeec------cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461           11 RPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNGERLGTY------RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus        11 ~~i~~~~~s~~~--~~l~s~~~d~~v~iw~~~~~~~~~~~------~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      ..+..++|.-++  +.|..++.|..+..+......+...+      ...+++|-.+...  +..|++|-.+|-+++|..+
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence            345677777555  46777778878777776665554432      3345566665543  3468889999999999887


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTI  161 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l  161 (326)
                      .+..-     ..+...  +..                                +          .++..+.-+|.. ..+
T Consensus       134 ~~d~h-----ss~l~~--la~--------------------------------g----------~g~~~~r~~~~~p~Iv  164 (412)
T KOG3881|consen  134 SGDLH-----SSKLIK--LAT--------------------------------G----------PGLYDVRQTDTDPYIV  164 (412)
T ss_pred             CCccc-----ccccee--eec--------------------------------C----------CceeeeccCCCCCceE
Confidence            54311     000000  000                                0          111122222323 356


Q ss_pred             EEeeCC--CcEEEEECCCCcccccccc----ccC--cceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCc-ceEEEEe
Q 020461          162 ISAGED--AIVRIWDTETGKLLKESDK----ETG--HKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTL-ELIKTYV  230 (326)
Q Consensus       162 ~s~~~d--~~i~~wd~~~~~~~~~~~~----~~~--h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~  230 (326)
                      ++||..  ..+++||+++.+.+..-..    ..+  -.--++++.|-+.  ...|+|++.-+.+++||.+.+ .++.++.
T Consensus       165 a~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd  244 (412)
T KOG3881|consen  165 ATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD  244 (412)
T ss_pred             ecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec
Confidence            779988  8899999987654322110    001  1223567778777  788999999999999999865 5666665


Q ss_pred             -eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC
Q 020461          231 -TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED  309 (326)
Q Consensus       231 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D  309 (326)
                       .+.++.++...|.++.++++-.  ...+..+|.|.+..--           ..+++-.+.|.++-.+|..+++|+|+-|
T Consensus       245 ~~E~~is~~~l~p~gn~Iy~gn~--~g~l~~FD~r~~kl~g-----------~~~kg~tGsirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  245 FLENPISSTGLTPSGNFIYTGNT--KGQLAKFDLRGGKLLG-----------CGLKGITGSIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             cccCcceeeeecCCCcEEEEecc--cchhheecccCceeec-----------cccCCccCCcceEEEcCCCceEEeeccc
Confidence             3678999999999998777533  3345566766654321           1256667889999999999999999999


Q ss_pred             CcEEEeecCC
Q 020461          310 GYVRLHHFDP  319 (326)
Q Consensus       310 g~i~l~~~~~  319 (326)
                      ..||||+.+.
T Consensus       312 RyvRIhD~kt  321 (412)
T KOG3881|consen  312 RYVRIHDIKT  321 (412)
T ss_pred             eeEEEeeccc
Confidence            9999998876

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.44  E-value=4.7e-11  Score=104.94  Aligned_cols=192  Identities=13%  Similarity=0.098  Sum_probs=123.9

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCC--cE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA   76 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~--~i   76 (326)
                      +..+..+...+...+|||||++|+.++.+   ..|++|++.+++... +..+.+.+.+++|+||++.|+ +.+.++  .|
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence            34455666678889999999998876643   479999998886543 334556677889999998665 455544  46


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      .+||+.+++.....                                                     .+........|+|
T Consensus       261 ~~~d~~~~~~~~l~-----------------------------------------------------~~~~~~~~~~~s~  287 (417)
T TIGR02800       261 YVMDLDGKQLTRLT-----------------------------------------------------NGPGIDTEPSWSP  287 (417)
T ss_pred             EEEECCCCCEEECC-----------------------------------------------------CCCCCCCCEEECC
Confidence            66776654321100                                                     0011122346888


Q ss_pred             CCcEEEEeeC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC---eEEEeecCCcceEEEEe
Q 020461          157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV  230 (326)
Q Consensus       157 ~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~  230 (326)
                      +++.|+..+. ++  .|.++|+.+++... +.   .+........++|+|.+++.++.++   .|.+||+.++.. ..+.
T Consensus       288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~  362 (417)
T TIGR02800       288 DGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT  362 (417)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEEE-ee---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc
Confidence            8887766554 33  57777877655322 21   2334566788999999999888876   799999987543 2222


Q ss_pred             eccceEEEEeCCCCCeeEEecCC
Q 020461          231 TERPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       231 ~~~~~~~~~~s~~~~~~~~~~~~  253 (326)
                      .........|+|++..++.+...
T Consensus       363 ~~~~~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       363 DTGLDESPSFAPNGRMILYATTR  385 (417)
T ss_pred             CCCCCCCceECCCCCEEEEEEeC
Confidence            22233456789998887765443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.8e-10  Score=97.61  Aligned_cols=292  Identities=17%  Similarity=0.185  Sum_probs=168.0

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEE-----EeCC-----CcEEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-----GSAD-----QTAKLWN   80 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-----~~~d-----~~i~~wd   80 (326)
                      .++...++|++|++++. +.+..++|++..++..+.+...-  .+..+.|+|-+.+|.+     --.+     --+++|+
T Consensus        35 ~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            34677889999987764 56678999998888644443332  7889999999888765     1122     3366999


Q ss_pred             ccCCcEEEEEecCCCc-ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           81 VETGAQLFTFNFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      ..++.....++..... ....|+.++.+++-...      ....+.++..       ......+-|...|+...++|-++
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~------nev~f~~~~~-------f~~~~~kl~~~~i~~f~lSpgp~  178 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVS------NEVQFYDLGS-------FKTIQHKLSVSGITMLSLSPGPE  178 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhhhhc------ceEEEEecCC-------ccceeeeeeccceeeEEecCCCC
Confidence            9885544444322221 34455555554432111      1111111111       11112233466788888888632


Q ss_pred             --EEEE-----eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe---EEEEeCC---------CeEEEeec
Q 020461          160 --TIIS-----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH---FLTGSLD---------KSAKLWDA  220 (326)
Q Consensus       160 --~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~---l~s~s~d---------g~i~iwd~  220 (326)
                        .+++     .|.-+.++||..........+....-....-..+.|.+-|.-   |++...|         .++++.++
T Consensus       179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t  258 (566)
T KOG2315|consen  179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT  258 (566)
T ss_pred             CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence              3332     455667999987522111111110111222234556655442   2222233         36888888


Q ss_pred             CCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCc------------------------------eeee
Q 020461          221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG------------------------------KFEA  270 (326)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~------------------------------~~~~  270 (326)
                      +...+.-.+..+++|.++.|+|++..++++-|.--..++.+|.+..                              .-.+
T Consensus       259 ~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~m  338 (566)
T KOG2315|consen  259 QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDM  338 (566)
T ss_pred             cCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCce
Confidence            8656666666678999999999998877665554433333333321                              1234


Q ss_pred             EeecccceeeeccccccCcceeEEEECCCCceEEeecC------CCcEEEeecCCC
Q 020461          271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE------DGYVRLHHFDPD  320 (326)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~------Dg~i~l~~~~~~  320 (326)
                      .+||....+.+..+..  ..-+-+.|+|||.+|.|++.      |+.++||++.-.
T Consensus       339 EvwDv~n~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  339 EVWDVPNRKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEeccchhhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            5566655554444432  34566999999999977765      788999998643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=1.9e-11  Score=110.34  Aligned_cols=190  Identities=17%  Similarity=0.253  Sum_probs=139.7

Q ss_pred             EEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccce-EE---EEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-WC---CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        17 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V-~~---~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      .+..+.+.++....+..+.+|+.+.+....+........ .+   +-++++.-++++|+.-+-|-+|+....+       
T Consensus        94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-------  166 (967)
T KOG0974|consen   94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-------  166 (967)
T ss_pred             chhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-------
Confidence            344556677777788899999988777666554433221 11   2235555678888888888888864110       


Q ss_pred             CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEE
Q 020461           93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~  172 (326)
                                                                  .+. .+.||.+.|.++.++-+|.++++.|+|.++++
T Consensus       167 --------------------------------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRl  201 (967)
T KOG0974|consen  167 --------------------------------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRL  201 (967)
T ss_pred             --------------------------------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceee
Confidence                                                        001 45789999999999999999999999999999


Q ss_pred             EECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461          173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      |++.+++...  ....+|+..+..++++++  +++|++.|-+.++|+..- +.+.                         
T Consensus       202 W~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~-------------------------  251 (967)
T KOG0974|consen  202 WPIDSREVLG--CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLE-------------------------  251 (967)
T ss_pred             eecccccccC--cccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceeh-------------------------
Confidence            9999887655  233589999999999998  899999999999995321 1111                         


Q ss_pred             CCcceeEeecccCceeeeEeecccceeeeccccccC-cceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                                                    .+.+|. .-|+.++..++....+|++.||.+++|++-
T Consensus       252 ------------------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  252 ------------------------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ------------------------------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence                                          112232 247889998888889999999999998764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=3.8e-12  Score=120.40  Aligned_cols=206  Identities=16%  Similarity=0.229  Sum_probs=143.8

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .++.|-..+.++.=+|...+.+||+.||+|++|....+..+..++. -+..|..+.|+.+|+.+..+..||.+.+|... 
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            3445556788888889999999999999999999888887777753 23679999999999999999999999999987 


Q ss_pred             CcEEEEEecCCC-cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           84 GAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      .+.....+.+.. ...+.|.. ..++..+..   ..+..+..|+...    ..+.. .+...|.+.++++++-|..+.|+
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s---~d~~n~~lwDtl~----~~~~s-~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG-SLLATAGRS---SDNRNVCLWDTLL----PPMNS-LVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred             CcceeccccCCccccceeeee-hhhhccccC---CCCCcccchhccc----Ccccc-eeeeecCCCceEEEEcCcceEEE
Confidence            344434433221 11111111 001000000   0111122222111    11122 22388999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (326)
                      +||.+|.|++||++..++++.+..            ++ ...++++|+..|.++||++.....++++..+.
T Consensus      2353 sggr~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            999999999999998777655431            33 45689999999999999999888888776553

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=2.6e-10  Score=100.52  Aligned_cols=191  Identities=13%  Similarity=0.106  Sum_probs=118.8

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCc--E
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A   76 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~--i   76 (326)
                      ++.+..+...+...+|||||+.|+..+.+   ..|.+|++.+++... +....+.+...+|+|||+.|+ +.+.++.  |
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            34555677788899999999998876543   358888998886543 223334455789999998775 5555553  5


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      .+||+.+++....                                                     ..+........|+|
T Consensus       270 y~~d~~~~~~~~l-----------------------------------------------------t~~~~~~~~~~~sp  296 (430)
T PRK00178        270 YVMDLASRQLSRV-----------------------------------------------------TNHPAIDTEPFWGK  296 (430)
T ss_pred             EEEECCCCCeEEc-----------------------------------------------------ccCCCCcCCeEECC
Confidence            5667665542110                                                     00111123356899


Q ss_pred             CCcEEEEeeC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-C--eEEEeecCCcceEEEEe
Q 020461          157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYV  230 (326)
Q Consensus       157 ~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~  230 (326)
                      +++.|+..+. ++  .|.++|+.+++... +.. .+  .......|+|||+.++..+.+ +  .|.+||+.+++. +.+.
T Consensus       297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~-~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt  371 (430)
T PRK00178        297 DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTF-VG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT  371 (430)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEEE-eec-CC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc
Confidence            9887765543 33  47777877665422 211 11  223356899999998877653 3  588899988764 3332


Q ss_pred             eccceEEEEeCCCCCeeEEecC
Q 020461          231 TERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       231 ~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      .........|+|++..++.+..
T Consensus       372 ~~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        372 DTSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             CCCCCCCceECCCCCEEEEEEe
Confidence            2222234579999988877644

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=8.2e-11  Score=95.41  Aligned_cols=209  Identities=17%  Similarity=0.253  Sum_probs=144.4

Q ss_pred             CCEEEeecCCCCeEEEecCCCCe----eeeccCcccceEEEEEcCCCC-eEEEEeCC--CcEEEEEccCCcEEEEEecC-
Q 020461           22 GDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVSRDSM-TLITGSAD--QTAKLWNVETGAQLFTFNFD-   93 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~----~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d--~~i~~wd~~~~~~~~~~~~~-   93 (326)
                      ...|++|-.+|.+.+|..+.+..    ...+..+ ..+..+.-++... .+++||..  .-+++||+++.+.++.-..- 
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp  193 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP  193 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence            34677889999999999875432    2223332 4455565566544 45668888  78999999988665543211 


Q ss_pred             C-------C--cceeeeecC--C-eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           94 S-------P--ARSVDFAVG--D-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        94 ~-------~--~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .       |  ...+.|.++  . +++.+...      ....+.+..     .+..++..+.-...++.++...|.++.+
T Consensus       194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~------hqvR~YDt~-----~qRRPV~~fd~~E~~is~~~l~p~gn~I  262 (412)
T KOG3881|consen  194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRY------HQVRLYDTR-----HQRRPVAQFDFLENPISSTGLTPSGNFI  262 (412)
T ss_pred             CccccceeeeeeccceecCCCCCceEEEEecc------eeEEEecCc-----ccCcceeEeccccCcceeeeecCCCcEE
Confidence            0       1  122334433  2 22222111      111122211     2335666677778889999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeC
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s  241 (326)
                      ++|..-+.+..+|+++++.....  ..+..+.++++..+|.++++++++.|..+||+|+++.+++...+....++++.+.
T Consensus       263 y~gn~~g~l~~FD~r~~kl~g~~--~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~  340 (412)
T KOG3881|consen  263 YTGNTKGQLAKFDLRGGKLLGCG--LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR  340 (412)
T ss_pred             EEecccchhheecccCceeeccc--cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence            99999999999999998876542  2356788999999999999999999999999999998888887777778888776


Q ss_pred             CCC
Q 020461          242 PLL  244 (326)
Q Consensus       242 ~~~  244 (326)
                      +..
T Consensus       341 ~~~  343 (412)
T KOG3881|consen  341 DDV  343 (412)
T ss_pred             CCc
Confidence            543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=4.4e-09  Score=85.03  Aligned_cols=266  Identities=14%  Similarity=0.151  Sum_probs=161.8

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCC---CCeEEEecCC--CCeeee--ccCcccceEEEEEcCCCCeEEEEeC-CCcEE
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADN--GERLGT--YRGHNGAVWCCDVSRDSMTLITGSA-DQTAK   77 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~--~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~   77 (326)
                      +-.+...++.++|+|+.++|.++..+   |.|--|.+..  |++...  ...-..+-.-+++++++++++++.. -|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            34456678999999999999887654   6666665543  544221  1111122256888999999999884 57788


Q ss_pred             EEEccCCcEEE-EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           78 LWNVETGAQLF-TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        78 ~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ++-++....+. ..+.                                  +..   ..++..   .+.-..-+....++|
T Consensus       115 v~p~~~dG~l~~~v~~----------------------------------~~h---~g~~p~---~rQ~~~h~H~a~~tP  154 (346)
T COG2706         115 VYPLQADGSLQPVVQV----------------------------------VKH---TGSGPH---ERQESPHVHSANFTP  154 (346)
T ss_pred             EEEcccCCccccceee----------------------------------eec---CCCCCC---ccccCCccceeeeCC
Confidence            88775522111 0000                                  000   000000   000112255678999


Q ss_pred             CCcEEEEee-CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCc----ceEEEEe
Q 020461          157 LNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTL----ELIKTYV  230 (326)
Q Consensus       157 ~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~----~~~~~~~  230 (326)
                      +++++++.. .-..|.+|++..+++...-..........+.+.|+|++++....++ +++|.+|.....    +.++.+.
T Consensus       155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~  234 (346)
T COG2706         155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID  234 (346)
T ss_pred             CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence            999887652 2345999999988765432222334456789999999999887775 899999988763    2333322


Q ss_pred             -------eccceEEEEeCCCCCeeEEecC-CCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce
Q 020461          231 -------TERPVNAVTMSPLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS  302 (326)
Q Consensus       231 -------~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~  302 (326)
                             .......+-++++|+.+.++-. .+...++..|...+.+...-+.          ..+.-.-+.+.|+|+|++
T Consensus       235 tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~----------~teg~~PR~F~i~~~g~~  304 (346)
T COG2706         235 TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT----------PTEGQFPRDFNINPSGRF  304 (346)
T ss_pred             cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe----------ccCCcCCccceeCCCCCE
Confidence                   1234667889999999888743 2333333334433332221111          112123578999999999


Q ss_pred             EEeecCC-CcEEEeecCCCc
Q 020461          303 FSSGGED-GYVRLHHFDPDY  321 (326)
Q Consensus       303 lat~s~D-g~i~l~~~~~~~  321 (326)
                      |+++..| ..|.+|..+++.
T Consensus       305 Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         305 LIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEccCCCcEEEEEEcCCC
Confidence            8877774 579999988764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.36  E-value=5.5e-09  Score=89.20  Aligned_cols=277  Identities=14%  Similarity=0.107  Sum_probs=151.9

Q ss_pred             EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecC
Q 020461           25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG  104 (326)
Q Consensus        25 l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  104 (326)
                      +++-..++.|.+.|..+.+.+.++......-..+.|+||++++++++.|+.|.++|+.+.+.+..+.......++.++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence            35566789999999999999999987554445577999999999999999999999999998888877666777888877


Q ss_pred             CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-------CccceeEEEEecCCcEEE-EeeCCCcEEEEECC
Q 020461          105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-------PQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE  176 (326)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~  176 (326)
                      ++.++++...    ...+.+.+.      .+.+.+..+..       ..+++..+.-+|....++ +.-+-+.|-+.|..
T Consensus        89 G~~~~v~n~~----~~~v~v~D~------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   89 GKYVYVANYE----PGTVSVIDA------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             TTEEEEEEEE----TTEEEEEET------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             CCEEEEEecC----CCceeEecc------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            7766554311    011111110      11222322221       345667777788877555 44555778787876


Q ss_pred             CCccccccccccCcceeeEEEEEcCCCCeEEEE-eCCCeEEEeecCCcceEEEEeec-----cceEEEEeCCCCCeeEEe
Q 020461          177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       177 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~  250 (326)
                      ..+.......  .-........++|++++++.+ ..+..|-++|.++++.+..+...     .+...+ -+|....+...
T Consensus       159 d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~  235 (369)
T PF02239_consen  159 DPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWAT  235 (369)
T ss_dssp             TSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEE
T ss_pred             cccccceeee--cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEee
Confidence            5443321111  112345678899999987665 45778999999998887765432     122222 23433333333


Q ss_pred             cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee----cCCCcEEEeecCC
Q 020461          251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG----GEDGYVRLHHFDP  319 (326)
Q Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~----s~Dg~i~l~~~~~  319 (326)
                      .+.....+......    ....++....+.+..+....++ .-+.-+|+++++...    ...++|.+++...
T Consensus       236 ~~~~~~~~~~ig~~----~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  236 SGLGYFAIPLIGTD----PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             EBSSSSEEEEEE------TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             ccccceecccccCC----ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence            32222221111110    0111222222223333333344 778889999999887    4458888866554

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.4e-10  Score=99.67  Aligned_cols=192  Identities=15%  Similarity=0.096  Sum_probs=113.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecC-CC--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCc--EE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAK-DH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--AK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~-d~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~--i~   77 (326)
                      +.+..+...+.+..|||||+.|+..+. ++  .|.+||+.+++... +....+.....+|+||++.|+ +.+.++.  |.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            344455667788999999998887653 33  57788988876432 222233345688999999765 4566665  44


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      ++|+.+++....                                                     ..+........|+|+
T Consensus       290 ~~dl~tg~~~~l-----------------------------------------------------t~~~~~~~~p~wSpD  316 (448)
T PRK04792        290 VVDIATKALTRI-----------------------------------------------------TRHRAIDTEPSWHPD  316 (448)
T ss_pred             EEECCCCCeEEC-----------------------------------------------------ccCCCCccceEECCC
Confidence            445554432110                                                     001112234578999


Q ss_pred             CcEEEEeeC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcceEEEEee
Q 020461          158 NRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVT  231 (326)
Q Consensus       158 ~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~  231 (326)
                      ++.|+..+. ++  .|.++|+.+++... +.. .+  ......+|+|||++++..+. ++  .|.++|+.+++.. .+..
T Consensus       317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~-~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~  391 (448)
T PRK04792        317 GKSLIFTSERGGKPQIYRVNLASGKVSR-LTF-EG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTS  391 (448)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEE-Eec-CC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccC
Confidence            987765443 34  46666777665432 211 11  22345689999999887655 34  4556788777642 2222


Q ss_pred             ccceEEEEeCCCCCeeEEecCCC
Q 020461          232 ERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       232 ~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      ........|+|+++.++.+...+
T Consensus       392 ~~~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        392 TRLDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             CCCCCCceECCCCCEEEEEEecC
Confidence            21222447999998887765433

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=2.8e-11  Score=102.71  Aligned_cols=192  Identities=16%  Similarity=0.216  Sum_probs=140.0

Q ss_pred             EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~   94 (326)
                      .++++.-..=|+.++....|+-.|++.|..+..|....+.++++..++-..+|+.|+.+|.|..||..+...+..+....
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            45555333334444455577888999999999998888999999999988899999999999999998765443332111


Q ss_pred             CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE
Q 020461           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (326)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd  174 (326)
                      .+.+                               .+.          ......|+++.|+.+|-.++.|..+|.+.|||
T Consensus       218 ~v~s-------------------------------~pg----------~~~~~svTal~F~d~gL~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  218 SVNS-------------------------------HPG----------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD  256 (703)
T ss_pred             ccCC-------------------------------Ccc----------ccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence            0000                               000          00123478888998888999999999999999


Q ss_pred             CCCCccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461          175 TETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  250 (326)
                      +++.+.+....  .+-.-+|..+.|.+.  +..++|.. ...++|||..+++....+.....++.+|+-|....++++
T Consensus       257 LRa~~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  257 LRASKPLLVKD--HGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             cccCCceeecc--cCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence            99887765332  234567888888765  44455544 467999999999999888888889999999988777765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.35  E-value=5.8e-10  Score=98.07  Aligned_cols=207  Identities=16%  Similarity=0.102  Sum_probs=124.5

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (326)
                      ..|.++|.. +.....+..+...+...+|+||+++|+.++.+   ..|.+||+.+++.....                  
T Consensus       170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------------------  230 (417)
T TIGR02800       170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA------------------  230 (417)
T ss_pred             ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee------------------
Confidence            356677764 33344555667788999999999988876643   46888888766432110                  


Q ss_pred             EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCC--cEEEEECCCCccccccc
Q 020461          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESD  185 (326)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~  185 (326)
                                                         .+.+.+....|+|+++.|+ +.+.++  .|.+||+.+++... +.
T Consensus       231 -----------------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~  274 (417)
T TIGR02800       231 -----------------------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT  274 (417)
T ss_pred             -----------------------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC
Confidence                                               0111223467899988665 444444  58889988765322 21


Q ss_pred             cccCcceeeEEEEEcCCCCeEEEEeCC-C--eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCC-cceeEee
Q 020461          186 KETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTT  261 (326)
Q Consensus       186 ~~~~h~~~v~~v~~s~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~  261 (326)
                         .+........|++||+.|+..+.. +  .|+++|+.+++...-...........++|+++.++.+.... ...+..+
T Consensus       275 ---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       275 ---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             ---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence               233344567899999988776643 3  58888888766433322334456778999998877765432 1223333


Q ss_pred             cccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC
Q 020461          262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG  310 (326)
Q Consensus       262 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg  310 (326)
                      |...+.            . ..+... ......+|+|||++|+..+.++
T Consensus       352 d~~~~~------------~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       352 DLDGGG------------E-RVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             eCCCCC------------e-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            322211            1 111111 1234568999999988777765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=8.4e-10  Score=96.50  Aligned_cols=191  Identities=14%  Similarity=0.059  Sum_probs=109.0

Q ss_pred             ecCCceeEEEEccCCCE--E-EeecCCC--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC-CC----cEE
Q 020461            8 GHERPLTYLKYNKDGDL--L-FSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ----TAK   77 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~--l-~s~~~d~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~----~i~   77 (326)
                      ........=+|||||+.  + ++...++  .|.+.++.+++... +....+.....+|+|||+.|+-.+. +|    .+.
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~  260 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ  260 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence            33444566799999974  2 2444444  45566887775432 2223444566899999988765542 23    222


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      .|++..+..                                                 +.......+..+......|+|+
T Consensus       261 ~~~~~~g~~-------------------------------------------------g~~~~lt~~~~~~~~~p~wSPD  291 (428)
T PRK01029        261 SFSLETGAI-------------------------------------------------GKPRRLLNEAFGTQGNPSFSPD  291 (428)
T ss_pred             EeecccCCC-------------------------------------------------CcceEeecCCCCCcCCeEECCC
Confidence            233322100                                                 0000111111122345689999


Q ss_pred             CcEEEEee-CCCcEEEEE--CCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEeecCCcceEEEEe
Q 020461          158 NRTIISAG-EDAIVRIWD--TET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV  230 (326)
Q Consensus       158 ~~~l~s~~-~d~~i~~wd--~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~  230 (326)
                      |+.|+..+ .+|...+|.  +.. +.....+.   .+...+....|+|||+.|+..+.+   ..|.+||+.+++...-..
T Consensus       292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~  368 (428)
T PRK01029        292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT  368 (428)
T ss_pred             CCEEEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC
Confidence            99777655 466656664  332 22122121   223456678999999998876543   369999999887643322


Q ss_pred             eccceEEEEeCCCCCeeEEec
Q 020461          231 TERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       231 ~~~~~~~~~~s~~~~~~~~~~  251 (326)
                      .........|+|+++.++...
T Consensus       369 ~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        369 SPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             CCCCccceEECCCCCEEEEEE
Confidence            233566789999998877654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.6e-11  Score=110.65  Aligned_cols=150  Identities=24%  Similarity=0.342  Sum_probs=121.3

Q ss_pred             EEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCC
Q 020461           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP   95 (326)
Q Consensus        16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~   95 (326)
                      +.++++.-++++|+.-+.+.+|.....+.-..+.+|.+.+..+.++.||+++++.|.|+++|+|++++.+..-       
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------  211 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------  211 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------
Confidence            3456777799999999999999887444444688999999999999999999999999999999998765321       


Q ss_pred             cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEEC
Q 020461           96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT  175 (326)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~  175 (326)
                                                                  ...-+|..++..+.+.|.  .++|++.|-+.++|+.
T Consensus       212 --------------------------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  212 --------------------------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             --------------------------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence                                                        012368888999999997  8999999999999976


Q ss_pred             CCCccccccccccCcc-eeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          176 ETGKLLKESDKETGHK-KTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       176 ~~~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      +-. .+..+.   +|. ..+..++.+++...++|++.|+.+++||+..
T Consensus       246 ~~~-~l~~y~---~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  246 NGT-QLEVYD---EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccc-eehhhh---hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            533 333332   343 4588899999999999999999999998754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.31  E-value=2.2e-11  Score=106.23  Aligned_cols=254  Identities=15%  Similarity=0.229  Sum_probs=165.1

Q ss_pred             eeEEEEccCC---CEEEeecCCCCeEEEecCCC---CeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCc
Q 020461           13 LTYLKYNKDG---DLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        13 i~~~~~s~~~---~~l~s~~~d~~v~iw~~~~~---~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      +..+.|+|..   ..+++.+. ..-.+|++...   ..-..+.+|..+|..+.|+|.. ..+++++.|-.+..||++...
T Consensus        70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            5677888753   35666655 45568987643   2333567899999999999865 478999999999999997643


Q ss_pred             EE-EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           86 QL-FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .. ..+.                                .|                    .+.-..+.|+-....++..
T Consensus       149 ~p~ys~~--------------------------------~w--------------------~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen  149 RPFYSTS--------------------------------SW--------------------RSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             cceeeee--------------------------------cc--------------------cccCceeeecccCcchhhh
Confidence            21 1100                                00                    0112234455444456666


Q ss_pred             eCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCc--ceEEEEeeccceEEEEeC
Q 020461          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL--ELIKTYVTERPVNAVTMS  241 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~s  241 (326)
                      +....|++||++.|......  ..+|-..+..+++.. --..+.+.+.|++|++||....  +..+......++.--.+.
T Consensus       177 shg~~i~vwd~r~gs~pl~s--~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~  254 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCS--LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL  254 (1081)
T ss_pred             ccCCceEEEeccCCCcceEE--ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence            77778999999877654322  234777777777654 2446889999999999998753  333333445566667788


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc----------eEEeecCCCc
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK----------SFSSGGEDGY  311 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~----------~lat~s~Dg~  311 (326)
                      |.++..++-...++..+-..+.+....+...++.  ..+++.+.||...|....|-..+.          .|+|=|.|.+
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~--~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~  332 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL--NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT  332 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccchhhhhccccC--CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence            8888777665555443333332222212222222  345778899999998877754222          5999999999


Q ss_pred             EEEeecCCCcee
Q 020461          312 VRLHHFDPDYFN  323 (326)
Q Consensus       312 i~l~~~~~~~~~  323 (326)
                      +|+|.+++..++
T Consensus       333 lrlWpI~~~i~~  344 (1081)
T KOG0309|consen  333 LRLWPIDSQIQR  344 (1081)
T ss_pred             eEeeeccHHHHH
Confidence            999999987654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.31  E-value=9.7e-10  Score=86.16  Aligned_cols=168  Identities=15%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             EEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEE
Q 020461          140 LILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKL  217 (326)
Q Consensus       140 ~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~i  217 (326)
                      ..++.|+-++.-+.|+... +.+.+||+|+.+..||++..+.. ......-|...|.++..+| .+.+++||+.|..|++
T Consensus       159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-eeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence            3456777777777776544 47789999999999999833211 1122335778899987765 5789999999999999


Q ss_pred             eecC-CcceEEEEeeccceEEEEeCCCCCeeEEec-CCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461          218 WDAR-TLELIKTYVTERPVNAVTMSPLLDHVVLGG-GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (326)
Q Consensus       218 wd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  295 (326)
                      ||.| .++++..-....-|.-+..+|...+.+++. .-.+..+.........+.+         .+...+.|.+-+..-.
T Consensus       238 ~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~---------~~~s~~~hdSl~YG~D  308 (339)
T KOG0280|consen  238 LDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI---------VLPSDKIHDSLCYGGD  308 (339)
T ss_pred             eehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe---------eeeccccccceeeccc
Confidence            9999 577776655556677788888766443322 1122111111111111111         1223455665555555


Q ss_pred             ECCCCceEEeecC-CCcEE-Eeec
Q 020461          296 FNPDGKSFSSGGE-DGYVR-LHHF  317 (326)
Q Consensus       296 ~s~d~~~lat~s~-Dg~i~-l~~~  317 (326)
                      |..--..||||+- |..++ +|-.
T Consensus       309 Wd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  309 WDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             cccccceeeeeeccccceeeeeee
Confidence            5433467899875 77755 6643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.31  E-value=4.4e-10  Score=103.42  Aligned_cols=224  Identities=17%  Similarity=0.186  Sum_probs=144.0

Q ss_pred             EecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEE-EEEecCCCcceeeeecCCeEEEEEcCc
Q 020461           37 WFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQL-FTFNFDSPARSVDFAVGDKLAVITTDP  114 (326)
Q Consensus        37 w~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (326)
                      |+. .|.++..+.+|...|..++.+++. .+|+|||.||+||+||.+.-..- .++                        
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------------------ 1088 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------------------ 1088 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee------------------------
Confidence            653 678899999999999998887654 89999999999999998642100 000                        


Q ss_pred             cceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCC--cccc---ccccccC
Q 020461          115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KLLK---ESDKETG  189 (326)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~---~~~~~~~  189 (326)
                                            ....++.-..+++.++...+.+..++.++.||.|++.++...  +...   .......
T Consensus      1089 ----------------------rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1089 ----------------------RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred             ----------------------eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence                                  000001112345666677777889999999999999998652  1110   0111111


Q ss_pred             cceeeEEE-EEcC-CCC-eEEEEeCCCeEEEeecCCcceEEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecc
Q 020461          190 HKKTITSL-AKAA-DGS-HFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (326)
Q Consensus       190 h~~~v~~v-~~s~-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~  263 (326)
                      ..+.+.++ ++.. .++ .++.+..-+.|..||+++..-......   .+.+.+++.+|.+..+++|...+.  +..||.
T Consensus      1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~--l~lWDL 1224 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ--LVLWDL 1224 (1431)
T ss_pred             CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce--EEEEEe
Confidence            22334443 3332 234 788888889999999998665544432   357999999999998887655443  556676


Q ss_pred             cCceeeeEeecccceeeeccccccCcceeEEEECCCCc---e-EEeec-CCCcEEEeecCCC
Q 020461          264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK---S-FSSGG-EDGYVRLHHFDPD  320 (326)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~---~-lat~s-~Dg~i~l~~~~~~  320 (326)
                      |.+.. +.-|.          .++..+|+.|..+|-.+   . +++++ ..+.|.+|++...
T Consensus      1225 RF~~~-i~sw~----------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1225 RFRVP-ILSWE----------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ecCce-eeccc----------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            65432 11111          23456788877776433   3 44455 6889999998765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2.9e-09  Score=93.87  Aligned_cols=216  Identities=14%  Similarity=0.041  Sum_probs=124.6

Q ss_pred             eEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEE
Q 020461           34 PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI  110 (326)
Q Consensus        34 v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (326)
                      +.++|...++ ...+..+...+....|+|||+.|+..+.+   ..|.+||+.+++......                   
T Consensus       181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-------------------  240 (430)
T PRK00178        181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-------------------  240 (430)
T ss_pred             EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------------------
Confidence            5566665443 34455667789999999999988766543   246777877654321100                   


Q ss_pred             EcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCC--cEEEEECCCCccccccccc
Q 020461          111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESDKE  187 (326)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~~~  187 (326)
                                                     ..   +......|+|+++.|+ +...++  .|.+||+.+++... +.  
T Consensus       241 -------------------------------~~---g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--  283 (430)
T PRK00178        241 -------------------------------FE---GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT--  283 (430)
T ss_pred             -------------------------------CC---CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc--
Confidence                                           00   1122367899998776 444444  58888998775432 22  


Q ss_pred             cCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461          188 TGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (326)
Q Consensus       188 ~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~  264 (326)
                       .+........|+|||+.++..+. ++  .|+++|+.+++..+-...........++|+++.++.....++         
T Consensus       284 -~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~---------  353 (430)
T PRK00178        284 -NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG---------  353 (430)
T ss_pred             -cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---------
Confidence             23444567789999998876654 33  577788877764332222222334678999988876643322         


Q ss_pred             CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461          265 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD  320 (326)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~  320 (326)
                        .+.+..++...++.. .+. +........|+|||++++..+. +|.-+|+.++.+
T Consensus       354 --~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        354 --NFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             --ceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence              122333333222111 111 1112235689999999876654 455555544443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3e-09  Score=90.39  Aligned_cols=285  Identities=13%  Similarity=0.175  Sum_probs=164.0

Q ss_pred             CceeEEEEccCCCEEEeec-----------CCCCeEEEecCCCCeeeeccCc--ccceEE-EEEcCCCCeEEEEeCCCcE
Q 020461           11 RPLTYLKYNKDGDLLFSCA-----------KDHTPTVWFADNGERLGTYRGH--NGAVWC-CDVSRDSMTLITGSADQTA   76 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~-----------~d~~v~iw~~~~~~~~~~~~~h--~~~V~~-~~~~~~~~~l~s~~~d~~i   76 (326)
                      ..|..+.|||.-+||+|=|           .-..++|||+.+|...+.|...  ...++- ..||.|++++|--..+ +|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence            3578999999999999854           2268899999999998888763  334553 5799999998876665 68


Q ss_pred             EEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           77 KLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      .+|+.....++-.-.. ...+...+|+|.+.+++..+........+..+-.+..      +..++.-.-++-.=-.+-|.
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs------~~~iRt~nlfnVsDckLhWQ  402 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS------KREIRTKNLFNVSDCKLHWQ  402 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc------cceeeeccceeeeccEEEec
Confidence            8998755322211111 2345667788887777665433222222221111111      11111111111111124455


Q ss_pred             cCCcEEEE----------eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC---CCeEEEeecCC
Q 020461          156 PLNRTIIS----------AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART  222 (326)
Q Consensus       156 ~~~~~l~s----------~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~---dg~i~iwd~~~  222 (326)
                      ..|.+|+.          .|.=..+.|+.++.....-..   ..-...|...+|.|.|+.+++-+.   ..++.+|-+++
T Consensus       403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~---velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV---VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee---eecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            55555543          122223556665543321111   123567899999999998876553   45788887763


Q ss_pred             ----cceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee-eeccccccCcceeEEEEC
Q 020461          223 ----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-EIGGVKGHFGPINALAFN  297 (326)
Q Consensus       223 ----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~s  297 (326)
                          ...+..+.. ...+.+.|+|.|..+++++-..           ....+++++..... .......|. .-+.+.|.
T Consensus       480 ~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s-----------~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWD  546 (698)
T KOG2314|consen  480 NIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVS-----------RRGDLEFYDTDYADLKDTASPEHF-AATEVEWD  546 (698)
T ss_pred             CCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecc-----------cccceEEEecchhhhhhccCcccc-ccccceEC
Confidence                233333332 5678999999999988764211           11133444432100 001112342 45789999


Q ss_pred             CCCceEEeecCCC------cEEEeecC
Q 020461          298 PDGKSFSSGGEDG------YVRLHHFD  318 (326)
Q Consensus       298 ~d~~~lat~s~Dg------~i~l~~~~  318 (326)
                      |.|+|+.|++.-.      --+||.|+
T Consensus       547 PtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  547 PTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             CCCCEEEEeeehhhhccccceEEEEee
Confidence            9999999998743      34556554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=1.4e-09  Score=87.62  Aligned_cols=98  Identities=16%  Similarity=0.318  Sum_probs=73.5

Q ss_pred             CceeEEEEccCCCEEEeec-CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      .+|++++|.+||..|++++ .|..|+|||..++.++....---+.+.-+.||||+.+|+.+.-|+..++|+.........
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er  275 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER  275 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc
Confidence            6799999999999999988 578999999999987765544466788899999999999999999999997654332222


Q ss_pred             Eec-CCCcceeeeecCCeEE
Q 020461           90 FNF-DSPARSVDFAVGDKLA  108 (326)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~  108 (326)
                      +.. ...+....|++...+.
T Consensus       276 w~lgsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  276 WILGSGRVQTACWSPCGSFL  295 (445)
T ss_pred             eeccCCceeeeeecCCCCEE
Confidence            221 2344455677654433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=8.7e-10  Score=88.27  Aligned_cols=274  Identities=14%  Similarity=0.191  Sum_probs=159.1

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCC-----eeeeccCcc------------cceEEEEEcCCCC--eEEEEe
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHN------------GAVWCCDVSRDSM--TLITGS   71 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-----~~~~~~~h~------------~~V~~~~~~~~~~--~l~s~~   71 (326)
                      +-|.++-|..+|.+|++|..+|.|.++.-....     ...+++.|.            ..|+.+.|.++++  .++...
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            457899999999999999999999999643322     233444443            3577888987654  677788


Q ss_pred             CCCcEEEEEccCCcEEE-EEecC--CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE-EeccCcc
Q 020461           72 ADQTAKLWNVETGAQLF-TFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQG  147 (326)
Q Consensus        72 ~d~~i~~wd~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  147 (326)
                      .|++|++|-+....... .+...  .+...+.                    .+++-.+.+....-...+.+ .-..|.-
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~--------------------~lr~p~~~~~~~~vea~prRv~aNaHty  165 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTIT--------------------SLRLPVEGRHDLEVEASPRRVYANAHTY  165 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccc--------------------eeeceeeccccceeeeeeeeecccccee
Confidence            99999999886543221 00000  0000000                    00000000000000001111 1235677


Q ss_pred             ceeEEEEecCCcEEEEeeCCCcEEEEECCCC-ccc--ccccc--ccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecC
Q 020461          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLL--KESDK--ETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~--~~~~~--~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~  221 (326)
                      -|+++.++.++..++++ +|=+|.+|.+.-- +..  ..+.+  ...-...|++.-|+|.. ..++-.+..|+|++.|+|
T Consensus       166 hiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR  244 (433)
T KOG1354|consen  166 HINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR  244 (433)
T ss_pred             EeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence            79999999999999876 5778999987521 111  11111  01112457777888863 457778889999999998


Q ss_pred             CcceEEE----Ee-e------------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeeecc
Q 020461          222 TLELIKT----YV-T------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGG  283 (326)
Q Consensus       222 ~~~~~~~----~~-~------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~  283 (326)
                      ...+--.    +. +            -..+..+.|+.+|+.+++-   |-.            .+++|+..+ ..++..
T Consensus       245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR---Dyl------------tvk~wD~nme~~pv~t  309 (433)
T KOG1354|consen  245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR---DYL------------TVKLWDLNMEAKPVET  309 (433)
T ss_pred             hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe---ccc------------eeEEEeccccCCcceE
Confidence            5321100    00 0            1236677888888776642   222            344555422 112222


Q ss_pred             cccc------------Ccce---eEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          284 VKGH------------FGPI---NALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       284 ~~~h------------~~~v---~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +.-|            +..|   ..++||-++.+++|||.....|++..++.
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            2212            1222   45889999999999999999999886543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.25  E-value=4e-08  Score=82.34  Aligned_cols=225  Identities=9%  Similarity=0.041  Sum_probs=133.6

Q ss_pred             EccCCCEEEeecC----------CCCeEEEecCCCCeeeeccCccc-------ceEEEEEcCCCCeEEEEe-C-CCcEEE
Q 020461           18 YNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGHNG-------AVWCCDVSRDSMTLITGS-A-DQTAKL   78 (326)
Q Consensus        18 ~s~~~~~l~s~~~----------d~~v~iw~~~~~~~~~~~~~h~~-------~V~~~~~~~~~~~l~s~~-~-d~~i~~   78 (326)
                      +|||++.|+.|..          +..|.+||.++.+.+.++.--..       .-...+++|||++|+... . +..|-+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998776665          78999999999999887763111       234678999999988776 3 689999


Q ss_pred             EEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCC-CceEEEeccCccce-eEEEEec
Q 020461           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG-GESVLILKGPQGRI-NRAVWGP  156 (326)
Q Consensus        79 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i-~~~~~~~  156 (326)
                      .|+.+++.+..+.........-......+. .+.+.....        +..+..... ......+.+...++ ..-.|.+
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~-~~~Dg~~~~--------v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~  203 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFM-HCRDGSLAK--------VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN  203 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEE-EeecCceEE--------EEecCCCceEEeeeeeecCCccccccCCceEc
Confidence            999999887766543211111111122222 222211100        000000000 00000111100000 0013455


Q ss_pred             -CCcEEEEeeCCCcEEEEECCCC-----ccccccccc----cCcceeeEEEEEcCCCCeEEEEeC----------CCeEE
Q 020461          157 -LNRTIISAGEDAIVRIWDTETG-----KLLKESDKE----TGHKKTITSLAKAADGSHFLTGSL----------DKSAK  216 (326)
Q Consensus       157 -~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~~----~~h~~~v~~v~~s~~~~~l~s~s~----------dg~i~  216 (326)
                       ++..+....+ |+|.+.|+...     +....+...    .-....+.-++++++++++.....          .+.|.
T Consensus       204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence             6766665555 99999995432     222111110    012233444899999998887532          25799


Q ss_pred             EeecCCcceEEEEeeccceEEEEeCCCCC-eeEEecC
Q 020461          217 LWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGG  252 (326)
Q Consensus       217 iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~  252 (326)
                      ++|.++++.+..+.....+..++++|++. .++++.+
T Consensus       283 ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       283 VVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             EEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence            99999999999998888999999999999 7766543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=6.7e-09  Score=88.81  Aligned_cols=96  Identities=24%  Similarity=0.309  Sum_probs=81.8

Q ss_pred             ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      -+|.++|+++.++.+-..|.+++.|+.+..|+.+.++.++...   .-...+.+++++|||..+++|+  ++|++||+++
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~  173 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET  173 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence            3678889999988888899999999999999998877665432   3456788999999999999998  6899999999


Q ss_pred             cceEEEEe-eccceEEEEeCCC
Q 020461          223 LELIKTYV-TERPVNAVTMSPL  243 (326)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~s~~  243 (326)
                      ++.+..|. +..+++++.|.-.
T Consensus       174 kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  174 KEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             ceEEEEecCCCcceEEEEEEEe
Confidence            99999997 4678999888765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=1.9e-09  Score=94.32  Aligned_cols=290  Identities=14%  Similarity=0.198  Sum_probs=179.3

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCe---------------eeeccCcccceEEEEEcCCCCeEEEEeCCCc
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---------------LGTYRGHNGAVWCCDVSRDSMTLITGSADQT   75 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~---------------~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~   75 (326)
                      ....|+.|+.+..++++|+.||.+++-.+.+...               -.++.||.+.|..+.|+.+.+.|-|...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            3468999999999999999999999986653211               1357899999999999998889999999999


Q ss_pred             EEEEEccCCcEE---EEEecCCCcceeeee-cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           76 AKLWNVETGAQL---FTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        76 i~~wd~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      |.+|-+-.+.=.   ..-+..+.+.+++|. .+.+++.+-.++...+- ...-.++-          -..+++.  ....
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG-svdGNRIw----------gKeLkg~--~l~h  161 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG-SVDGNRIW----------GKELKGQ--LLAH  161 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE-eeccceec----------chhcchh--eccc
Confidence            999987543210   000112233445554 34555555444332221 11101110          0011111  1335


Q ss_pred             EEEecCCcEEEEeeCCCcEEEEECCCCcccccccc------c---cCcceeeEEEEE--------cCCCCeEEEEeCCCe
Q 020461          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK------E---TGHKKTITSLAK--------AADGSHFLTGSLDKS  214 (326)
Q Consensus       152 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~---~~h~~~v~~v~~--------s~~~~~l~s~s~dg~  214 (326)
                      +.|+++.+.++.+-.+|.+.++|.... ....+..      .   ......+-.+.|        -||...|+.+..+|.
T Consensus       162 v~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr  240 (1189)
T KOG2041|consen  162 VLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR  240 (1189)
T ss_pred             eeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence            789999998888989999999996421 1111110      0   001112333333        368889999999999


Q ss_pred             EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461          215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (326)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  294 (326)
                      ++|-.-.+-..-.-+..+-.+....|+++|..++++|.+...     +.......+.++.. .++.++.++-....|+.+
T Consensus       241 ~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da-----~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~l  314 (1189)
T KOG2041|consen  241 MQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDA-----DEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGL  314 (1189)
T ss_pred             ehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccc-----cCccccceEEEecc-chhheEEEecCCceeeee
Confidence            888754432222223334567788899999988887654321     11112223445443 345555666666789999


Q ss_pred             EECCCCceEEeecCCCcEEEeecCCCc
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +|-..|-.+|- ..|++|.+=+++|+|
T Consensus       315 sWEg~gLriA~-AvdsfiyfanIRP~y  340 (1189)
T KOG2041|consen  315 SWEGTGLRIAI-AVDSFIYFANIRPEY  340 (1189)
T ss_pred             EEcCCceEEEE-EecceEEEEeecccc
Confidence            99765555554 459999999999987

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1e-08  Score=90.37  Aligned_cols=217  Identities=12%  Similarity=0.027  Sum_probs=120.4

Q ss_pred             CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC-CC--cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE
Q 020461           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (326)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (326)
                      .+.++|....+ ...+..+...+....|+|||+.|+-.+. ++  .|.+||+.+++......                  
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------  259 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------  259 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------------------
Confidence            45555654333 2344455678889999999998876553 33  36666776654321100                  


Q ss_pred             EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE-eeCCCc--EEEEECCCCcccccccc
Q 020461          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAI--VRIWDTETGKLLKESDK  186 (326)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~d~~--i~~wd~~~~~~~~~~~~  186 (326)
                                                      ..+   ......|+|+++.|+. .+.++.  |.++|+.+++... +. 
T Consensus       260 --------------------------------~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt-  302 (448)
T PRK04792        260 --------------------------------FPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-IT-  302 (448)
T ss_pred             --------------------------------CCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-
Confidence                                            001   1123579999987764 555664  7777887765432 22 


Q ss_pred             ccCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecc
Q 020461          187 ETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (326)
Q Consensus       187 ~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~  263 (326)
                        .+........|+|||+.++..+. ++  .|.++|+.+++..+-..........+++|+++.++.......        
T Consensus       303 --~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g--------  372 (448)
T PRK04792        303 --RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG--------  372 (448)
T ss_pred             --cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC--------
Confidence              23345567899999998876654 33  467778877764332112222334689999998876543222        


Q ss_pred             cCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461          264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD  320 (326)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~  320 (326)
                         ...+..++...+.. ..+... .......|+|||++|+..+. +|.-.||.++.+
T Consensus       373 ---~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        373 ---KFNIARQDLETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             ---ceEEEEEECCCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence               11222222211111 111111 11224579999998766554 454445544433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.22  E-value=8.3e-09  Score=86.84  Aligned_cols=287  Identities=19%  Similarity=0.312  Sum_probs=166.7

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCC---------------
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ---------------   74 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~---------------   74 (326)
                      .-++.+++|||.|.+|++...- -|.+|.......+..+.  ...|.-+.|+|.+++|.+=+...               
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             CcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence            4467899999999999987665 56889877666554443  45789999999999999866543               


Q ss_pred             cEEEEEccCCcEEEEEecCCCc----ceeeeecCCeEEEEEcCccceece--------------eeeeeeeccCCCCC--
Q 020461           75 TAKLWNVETGAQLFTFNFDSPA----RSVDFAVGDKLAVITTDPFMELNS--------------AIHVKRIARDPADQ--  134 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--  134 (326)
                      .+.+||+.++..+..+......    .-+.|+.+++.++-.....+.+..              ...+.+....+...  
T Consensus       109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~  188 (561)
T COG5354         109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHD  188 (561)
T ss_pred             ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCc
Confidence            3899999999888777543221    123444444332211100000000              00000000000000  


Q ss_pred             -----------CCceEEEeccCccce-----------eEEEEecCCcEEEEe------e-----CCCcEEEEECCCCccc
Q 020461          135 -----------GGESVLILKGPQGRI-----------NRAVWGPLNRTIISA------G-----EDAIVRIWDTETGKLL  181 (326)
Q Consensus       135 -----------~~~~~~~~~~~~~~i-----------~~~~~~~~~~~l~s~------~-----~d~~i~~wd~~~~~~~  181 (326)
                                 ....+..+.-+.+.+           -.+.|++.|.+++.-      +     ....+.|++++.....
T Consensus       189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~  268 (561)
T COG5354         189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP  268 (561)
T ss_pred             eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence                       001111111111111           145677888765531      1     1234677777633221


Q ss_pred             cccccccCcceeeEEEEEcCCCCeEEE--EeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeE
Q 020461          182 KESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT  259 (326)
Q Consensus       182 ~~~~~~~~h~~~v~~v~~s~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  259 (326)
                          ...+-.++|...+|.|.++.+++  |..+..+-++|++..  +..+.++..-+-+.|+|..+..+++|-..     
T Consensus       269 ----V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n-----  337 (561)
T COG5354         269 ----VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN-----  337 (561)
T ss_pred             ----eeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc-----
Confidence                11234578999999999887665  457888999999876  56666777888999999998877764321     


Q ss_pred             eecccCceeeeEeecccceeeec-cccccCcceeEEEECCCCceEEeec--C----CCcEEEeecC
Q 020461          260 TTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKSFSSGG--E----DGYVRLHHFD  318 (326)
Q Consensus       260 ~~d~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~s~d~~~lat~s--~----Dg~i~l~~~~  318 (326)
                          ..  ..+.+|+....-.+. .+.+  ....-+.|+||+.++-+.-  .    |..|+||++-
T Consensus       338 ----l~--gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         338 ----LQ--GNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             ----cc--cceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence                11  123444443222111 2222  2345688999999875553  2    8899999863

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.21  E-value=3.2e-07  Score=76.96  Aligned_cols=259  Identities=14%  Similarity=0.096  Sum_probs=134.3

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC----------CCcEEEEEccCCcEEEEEecCCCcc----
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA----------DQTAKLWNVETGAQLFTFNFDSPAR----   97 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~~~~~~----   97 (326)
                      ++|.+.|..+++.+.++..-..+-. + ++||++.++.+..          +..|.+||..+.+.+..+.......    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999999888865333332 4 8999998877666          7899999999999887776533322    


Q ss_pred             ----eeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe--------
Q 020461           98 ----SVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA--------  164 (326)
Q Consensus        98 ----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--------  164 (326)
                          .+.++++++.+.+.. ++..    ...+.++.      .++.+..+.-           |++..++..        
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~----~V~VvD~~------~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~  163 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSP----AVGVVDLE------GKAFVRMMDV-----------PDCYHIFPTANDTFFMH  163 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCC----EEEEEECC------CCcEEEEEeC-----------CCCcEEEEecCCccEEE
Confidence                456677766655443 1111    11111111      1111111111           222222211        


Q ss_pred             eCCCcEEEEECC-CCccccccccccCcc--eeeEEE-EEcC-CCCeEEEEeCCCeEEEeecCC-----cceEEEEeec--
Q 020461          165 GEDAIVRIWDTE-TGKLLKESDKETGHK--KTITSL-AKAA-DGSHFLTGSLDKSAKLWDART-----LELIKTYVTE--  232 (326)
Q Consensus       165 ~~d~~i~~wd~~-~~~~~~~~~~~~~h~--~~v~~v-~~s~-~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~--  232 (326)
                      +.||......+. +++.... ....-|.  ..+..- .+++ +|.++....+ |+|.+-|+..     .+.+..+...  
T Consensus       164 ~~Dg~~~~v~~d~~g~~~~~-~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~  241 (352)
T TIGR02658       164 CRDGSLAKVGYGTKGNPKIK-PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK  241 (352)
T ss_pred             eecCceEEEEecCCCceEEe-eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc
Confidence            223333222221 1110000 0000000  000000 2344 7877777776 9999999543     3333222111  


Q ss_pred             ------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEEe
Q 020461          233 ------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSS  305 (326)
Q Consensus       233 ------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat  305 (326)
                            .-..-++++++++.+++..-...    -+.+..+...+..++..+.+.+..+. -...++.|+|+||++ .|.+
T Consensus       242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~----~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyv  316 (352)
T TIGR02658       242 ADGWRPGGWQQVAYHRARDRIYLLADQRA----KWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYA  316 (352)
T ss_pred             ccccCCCcceeEEEcCCCCEEEEEecCCc----cccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEE
Confidence                  11234899999998887421111    00011111234444444444443332 123689999999999 7765


Q ss_pred             ec-CCCcEEEeecCCC
Q 020461          306 GG-EDGYVRLHHFDPD  320 (326)
Q Consensus       306 ~s-~Dg~i~l~~~~~~  320 (326)
                      .+ .++.|.+.+....
T Consensus       317 tn~~s~~VsViD~~t~  332 (352)
T TIGR02658       317 LSTGDKTLYIFDAETG  332 (352)
T ss_pred             eCCCCCcEEEEECcCC
Confidence            55 6888999776543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=3.6e-09  Score=90.41  Aligned_cols=144  Identities=15%  Similarity=0.196  Sum_probs=117.0

Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEE
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNA  237 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~  237 (326)
                      -.++-|...|.|.+++...++.-..+. ...|.+.|.++.++.+-..|.+++.|+.+-.|+.+....++.+.. ...+.+
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~s-t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s  149 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLS-TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS  149 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEe-cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence            356778889999999998887655443 357999999999999999999999999999999999988888754 456889


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC-----CceE-EeecCCCc
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD-----GKSF-SSGGEDGY  311 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d-----~~~l-at~s~Dg~  311 (326)
                      ++.+|++..+++++.                .+++|+....+.+..+.||.++|+++.|--+     |+++ .+...+.-
T Consensus       150 l~is~D~~~l~~as~----------------~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~  213 (541)
T KOG4547|consen  150 LCISPDGKILLTASR----------------QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG  213 (541)
T ss_pred             EEEcCCCCEEEeccc----------------eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence            999999888887654                5778888888888899999999999999766     6665 44455666


Q ss_pred             EEEeecCC
Q 020461          312 VRLHHFDP  319 (326)
Q Consensus       312 i~l~~~~~  319 (326)
                      +.+|..+.
T Consensus       214 i~~w~v~~  221 (541)
T KOG4547|consen  214 ITVWVVEK  221 (541)
T ss_pred             eeEEEEEc
Confidence            77777665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.4e-08  Score=88.80  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=103.6

Q ss_pred             CceeEEEEccCCCEEEeecC-----CCCeEEEecCCC---CeeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEc
Q 020461           11 RPLTYLKYNKDGDLLFSCAK-----DHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNV   81 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~-----d~~v~iw~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~   81 (326)
                      ......+|||||+.|+..+.     +-.+.+|++.++   +......++.+.....+|+|||+.|+..+ .++..++|.+
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            34456799999998876542     223334666643   22222333333456789999999776554 5666666643


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .....                                                 +.....+..+...+....|+|+|+.|
T Consensus       311 ~~~~~-------------------------------------------------g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        311 QIDPE-------------------------------------------------GQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             ECccc-------------------------------------------------ccceEEeccCCCCccceeECCCCCEE
Confidence            21000                                                 00000011112234557899999988


Q ss_pred             EEeeCC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC---CCeEEEeecCCcceEEEEeeccce
Q 020461          162 ISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERPV  235 (326)
Q Consensus       162 ~s~~~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~  235 (326)
                      +..+.+   ..|.+||+.+++... +..   ....+....|+|||+.|+..+.   ...|.++|+.+++...-.......
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~~-Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~  417 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDYQ-LTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEK  417 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeEE-ccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcc
Confidence            765443   368999998876532 221   1234567899999998875433   356888898877654333333344


Q ss_pred             EEEEeCCC
Q 020461          236 NAVTMSPL  243 (326)
Q Consensus       236 ~~~~~s~~  243 (326)
                      ...+|+|.
T Consensus       418 ~~p~Ws~~  425 (428)
T PRK01029        418 RFPSWGAF  425 (428)
T ss_pred             cCceecCC
Confidence            55566654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=2.8e-10  Score=96.63  Aligned_cols=178  Identities=17%  Similarity=0.255  Sum_probs=125.4

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-------CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCc
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT   75 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~   75 (326)
                      ..-+.||...|..+.--.+.+-++++|.|.+|++|.++.       ..+.-++..|+.+|..+.|-.+.+++++  -|+.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            345678888887776556677899999999999998752       2456678899999999999888777754  5778


Q ss_pred             EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      |.+||.--++.+....         +.+                            ....+..++.+..           
T Consensus       806 iHlWDPFigr~Laq~~---------dap----------------------------k~~a~~~ikcl~n-----------  837 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQME---------DAP----------------------------KEGAGGNIKCLEN-----------  837 (1034)
T ss_pred             ceeecccccchhHhhh---------cCc----------------------------ccCCCceeEeccc-----------
Confidence            9999986554432110         000                            0001111111111           


Q ss_pred             cCCc-EEEEeeCCCcEEEEECCCCccccccccc--cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          156 PLNR-TIISAGEDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       156 ~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      -+.. .++.++...+|+++|.+.++...+....  .+....+.+++..+.|+.+++|-.+|.|-+-|.++|..+..+.
T Consensus       838 v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  838 VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            0112 2345578899999999988766554332  4556778999999999999999999999999999999887654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.09  E-value=4.9e-07  Score=87.38  Aligned_cols=269  Identities=11%  Similarity=0.049  Sum_probs=144.9

Q ss_pred             eeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccC--cc------------cceEEEEEcCCCCeEEEEe-CCCcE
Q 020461           13 LTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRG--HN------------GAVWCCDVSRDSMTLITGS-ADQTA   76 (326)
Q Consensus        13 i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~--h~------------~~V~~~~~~~~~~~l~s~~-~d~~i   76 (326)
                      ...++++++ +.++++-+.++.|++++.. +..+..+.+  ..            ..-..+++.++++.|+.+. ....|
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            356788875 6678888889999999974 444433322  11            1236788888877666655 44678


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      +.+|+.++... .+..... ....+                                .++....  ...-+....++++|
T Consensus       649 r~id~~~~~V~-tlag~G~-~g~~~--------------------------------~gg~~~~--~~~ln~P~gVa~dp  692 (1057)
T PLN02919        649 REIDFVNETVR-TLAGNGT-KGSDY--------------------------------QGGKKGT--SQVLNSPWDVCFEP  692 (1057)
T ss_pred             EEEecCCCEEE-EEeccCc-ccCCC--------------------------------CCChhhh--HhhcCCCeEEEEec
Confidence            88888765422 1110000 00000                                0000000  00011224678898


Q ss_pred             C-CcEEEEeeCCCcEEEEECCCCcccccccc------ccC------cceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCC
Q 020461          157 L-NRTIISAGEDAIVRIWDTETGKLLKESDK------ETG------HKKTITSLAKAADGS-HFLTGSLDKSAKLWDART  222 (326)
Q Consensus       157 ~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~~------h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~  222 (326)
                      + +..+++...++.|++||..++... .+..      ..+      .-.....++++|++. .+++.+.++.|++||+++
T Consensus       693 ~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t  771 (1057)
T PLN02919        693 VNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT  771 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            4 556677788899999998766432 1100      001      112356789999988 455666789999999987


Q ss_pred             cceEEEEee----------------------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee
Q 020461          223 LELIKTYVT----------------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (326)
Q Consensus       223 ~~~~~~~~~----------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (326)
                      +........                      -....+++++++++..++-.++  ..+..+|...+......-....+-.
T Consensus       772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N--~rIrviD~~tg~v~tiaG~G~~G~~  849 (1057)
T PLN02919        772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN--HKIKKLDPATKRVTTLAGTGKAGFK  849 (1057)
T ss_pred             CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC--CEEEEEECCCCeEEEEeccCCcCCC
Confidence            653211000                      0123467777776533332221  1222233222211100000000000


Q ss_pred             e-ccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          281 I-GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       281 ~-~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      - ....+.......|+++++|+.+++.+.+++|++|+.+...
T Consensus       850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            0 0011222356789999999999999999999999987653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.08  E-value=1.3e-06  Score=74.59  Aligned_cols=196  Identities=14%  Similarity=0.170  Sum_probs=119.3

Q ss_pred             CceeEEEEccCCCEEEeec-CCCCeEEEecCC-CCeeee---cc----------CcccceEEEEEcCCCCeEEEEe-CCC
Q 020461           11 RPLTYLKYNKDGDLLFSCA-KDHTPTVWFADN-GERLGT---YR----------GHNGAVWCCDVSRDSMTLITGS-ADQ   74 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~-~~~~~~---~~----------~h~~~V~~~~~~~~~~~l~s~~-~d~   74 (326)
                      ....+++++|++++|+++. .+|+|.++++.. +.....   +.          .-.....++.++|+++++++.. ...
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            3446899999999888876 689999999976 333221   11          1123467889999999887765 344


Q ss_pred             cEEEEEccCCcE-EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           75 TAKLWNVETGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        75 ~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      .|.+|+++.... +...                             ..     +             . .........++
T Consensus       167 ~v~~~~~~~~~~~l~~~-----------------------------~~-----~-------------~-~~~G~GPRh~~  198 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPV-----------------------------DS-----I-------------K-VPPGSGPRHLA  198 (345)
T ss_dssp             EEEEEEE-TTS-TEEEE-----------------------------EE-----E-------------E-CSTTSSEEEEE
T ss_pred             EEEEEEEeCCCceEEEe-----------------------------ec-----c-------------c-cccCCCCcEEE
Confidence            688888765431 1000                             00     0             0 01123356788


Q ss_pred             EecCCcEEEE-eeCCCcEEEEECC--CCccc--cccc---cccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecC--C
Q 020461          154 WGPLNRTIIS-AGEDAIVRIWDTE--TGKLL--KESD---KETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR--T  222 (326)
Q Consensus       154 ~~~~~~~l~s-~~~d~~i~~wd~~--~~~~~--~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~--~  222 (326)
                      |+|++++++. .-.+++|.++++.  +++..  ..+.   ...........+.++|||++|.++. ..++|.++++.  +
T Consensus       199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~  278 (345)
T PF10282_consen  199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT  278 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred             EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence            9999887754 4558889999887  33221  1111   1111112567889999999988766 46789999983  2


Q ss_pred             c--ceEEEEee-ccceEEEEeCCCCCeeEEecCCC
Q 020461          223 L--ELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       223 ~--~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      +  +.+..+.. ....+.++++|+++.++++...+
T Consensus       279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence            3  33334444 34488999999999988875433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.06  E-value=3.4e-09  Score=86.58  Aligned_cols=86  Identities=23%  Similarity=0.349  Sum_probs=71.7

Q ss_pred             eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      +.||-+.+..++++||++.|+++..|..|++-....-..+..+  ..||..-|..++.-++. .|++||-|++|++||++
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--clGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--CLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--ccccHhheeeeeeccCc-eeeecCCCCcEEEEecc
Confidence            4588899999999999999999999999998766543333322  35899999999987765 48999999999999999


Q ss_pred             CcceEEEEe
Q 020461          222 TLELIKTYV  230 (326)
Q Consensus       222 ~~~~~~~~~  230 (326)
                      +++++.++.
T Consensus       224 sgk~L~t~d  232 (390)
T KOG3914|consen  224 SGKLLDTCD  232 (390)
T ss_pred             cCCcccccc
Confidence            999987764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.06  E-value=1.7e-09  Score=103.23  Aligned_cols=192  Identities=16%  Similarity=0.166  Sum_probs=132.7

Q ss_pred             cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCC--cc
Q 020461           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP--AR   97 (326)
Q Consensus        20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~~   97 (326)
                      +.++.......++...-|..+-+..  .++.+-..|.++.-+|...+-+||+.||.|++|....+..++.++..++  +.
T Consensus      2178 ~~s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred             cccccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence            3455565666667766665443332  2345566788888888888899999999999999999988888765333  33


Q ss_pred             eeeee-cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe---eCCCcEEEE
Q 020461           98 SVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA---GEDAIVRIW  173 (326)
Q Consensus        98 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~---~~d~~i~~w  173 (326)
                      .+.|. .++++.++..++.+.+      |..       +..+....+.|+......+|-.  ..++++   +.++.+.+|
T Consensus      2256 r~~f~~qGnk~~i~d~dg~l~l------~q~-------~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lw 2320 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSL------WQA-------SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLW 2320 (2439)
T ss_pred             hhhhcccCCceeeeccCCceee------ccc-------CCcceeccccCCccccceeeee--hhhhccccCCCCCcccch
Confidence            33343 3556655555443322      222       1346667788888777777755  445554   446789999


Q ss_pred             ECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      |..-.....-+.  ..|.+.++++++-|..+.|++|+.+|.|++||++..+..+.+.
T Consensus      2321 Dtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2321 DTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             hcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence            975432222222  5799999999999999999999999999999999877766654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.02  E-value=7e-10  Score=61.95  Aligned_cols=38  Identities=32%  Similarity=0.576  Sum_probs=36.2

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd   80 (326)
                      +++.++++|.+.|++++|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.00  E-value=1.3e-06  Score=82.96  Aligned_cols=293  Identities=16%  Similarity=0.176  Sum_probs=161.2

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEE----ecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVW----FADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw----~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .+.|..+.|-++...+..+..+|.|.+.    +..+.  +.+..   -...|.+.+||||.+.|+....++++-+-+- +
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~  150 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTR-D  150 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-c
Confidence            3568899999999989899999999998    43332  22332   3557999999999999999888888765532 1


Q ss_pred             CcEEEEE----------------------ecCC---------------------------CcceeeeecCCeEEEEEcC-
Q 020461           84 GAQLFTF----------------------NFDS---------------------------PARSVDFAVGDKLAVITTD-  113 (326)
Q Consensus        84 ~~~~~~~----------------------~~~~---------------------------~~~~~~~~~~~~~~~~~~~-  113 (326)
                      .+.+...                      +|++                           ....++|..++.+++++.- 
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence            1111100                      1110                           1112223333333333211 


Q ss_pred             ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC---CCcEEEEECCCCccccccccc-cC
Q 020461          114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKE-TG  189 (326)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~-~~  189 (326)
                      +.......++++  .+     .|....+.+.-.+--..++|.|.|.+|++...   ...|.+|..+ |-...++... ..
T Consensus       231 ~~~~~~R~iRVy--~R-----eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~  302 (928)
T PF04762_consen  231 PETGSRRVIRVY--SR-----EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDP  302 (928)
T ss_pred             cCCCceeEEEEE--CC-----CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCC
Confidence            110000111111  11     12222222211222346889999999998754   4457777654 3222222211 13


Q ss_pred             cceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc-e-EEEEe--eccceEEEEeCCCCCeeE-EecCCCcc--------
Q 020461          190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-L-IKTYV--TERPVNAVTMSPLLDHVV-LGGGQDAS--------  256 (326)
Q Consensus       190 h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~-~-~~~~~--~~~~~~~~~~s~~~~~~~-~~~~~~~~--------  256 (326)
                      ....|..+.|++|+..||....|. |++|-..+.. . .+++.  ....+..+.|+|.....+ +....+..        
T Consensus       303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~  381 (928)
T PF04762_consen  303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD  381 (928)
T ss_pred             CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence            456799999999999999988665 9999988764 1 12222  223345588888755422 22221221        


Q ss_pred             -------------eeEeecccCceeeeEeec--cc-ceee--eccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          257 -------------AVTTTDHRAGKFEAKFFD--KI-LQEE--IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       257 -------------~~~~~d~~~~~~~~~~~~--~~-~~~~--~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                                   .+...|+..    +.+-.  .. .+.+  ...+ .-..+|++++|++++..+|+-..||+|.+|.++
T Consensus       382 v~~s~~~~~~D~g~vaVIDG~~----lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  382 VSRSPGSSPNDNGTVAVIDGNK----LLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             EEecCCCCccCceEEEEEeCCe----EEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence                         111122111    00000  00 0000  0001 134689999999999889999999999998865


Q ss_pred             CC
Q 020461          319 PD  320 (326)
Q Consensus       319 ~~  320 (326)
                      ..
T Consensus       457 ~~  458 (928)
T PF04762_consen  457 LK  458 (928)
T ss_pred             CC
Confidence            43

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=2.3e-09  Score=91.21  Aligned_cols=208  Identities=19%  Similarity=0.302  Sum_probs=132.4

Q ss_pred             eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (326)
                      ..|.||+..|..++--.+.+-+++++.|++||+|.++....       .                               
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------~-------------------------------  770 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------E-------------------------------  770 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------c-------------------------------
Confidence            34678998888776555667899999999999999864210       0                               


Q ss_pred             eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcc--eeeEEEEEcCCC
Q 020461          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADG  203 (326)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~  203 (326)
                             .....+..+...|..+|+++-|-.+.+++++  .||.|.+||.--++.+..+.....|.  +.|.++- +-+.
T Consensus       771 -------~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~  840 (1034)
T KOG4190|consen  771 -------IGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDR  840 (1034)
T ss_pred             -------cccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcc
Confidence                   0011233445567778888888777666665  58899999987777766544333332  3333332 2244


Q ss_pred             CeEEEE-eCCCeEEEeecCCcceEEEEeec------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461          204 SHFLTG-SLDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI  276 (326)
Q Consensus       204 ~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (326)
                      ..+++| +...+++++|.++.+-+.++...      ..+.+++..+.|+.++++-+++  .+...|.|.+.. +.-|...
T Consensus       841 ~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG--ci~~LDaR~G~v-INswrpm  917 (1034)
T KOG4190|consen  841 HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG--CIAILDARNGKV-INSWRPM  917 (1034)
T ss_pred             hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC--cEEEEecCCCce-eccCCcc
Confidence            455555 77899999999999888777532      3478999999999887664443  344567666552 2223221


Q ss_pred             ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE-ee
Q 020461          277 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL-HH  316 (326)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l-~~  316 (326)
                      .           .....++ .|..+.||....|.++.+ |+
T Consensus       918 e-----------cdllqla-apsdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  918 E-----------CDLLQLA-APSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             c-----------chhhhhc-CchhHHHHhhcccceeEeeeh
Confidence            1           1122233 255566676777777777 54

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.99  E-value=7.8e-07  Score=70.19  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             EEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcc---cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461           16 LKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHN---GAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~---~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      ++.+.+|++||. -.|..|.|-..++.  ..+.+..-..   .+=..++||||+..||-+...|+|+++|+...+
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence            456789997775 47778888766553  2233332222   234568999999999999999999999987633

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=1.4e-09  Score=60.71  Aligned_cols=37  Identities=35%  Similarity=0.703  Sum_probs=33.8

Q ss_pred             eeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          280 EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       280 ~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      .+..+.+|.+.|++|+|+|++.+||||+.|++|++|+
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3455789999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.93  E-value=3.8e-07  Score=71.10  Aligned_cols=226  Identities=14%  Similarity=0.028  Sum_probs=134.9

Q ss_pred             CCEEEeecCCCCeEEEecCCCCe-eeeccCcccceEEEE-EcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCccee
Q 020461           22 GDLLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCD-VSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV   99 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~-~~~~~~h~~~V~~~~-~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~   99 (326)
                      --+||.|++.|...+|...+.+. .+....|...|.-+. .....-.+..++.|.++|+.+++.+.....          
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~----------  153 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA----------  153 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce----------
Confidence            34788899999999998876543 344445555443221 111122467788888888887754322100          


Q ss_pred             eeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc--cceeEEEEecCCcEEEEeeCCCcEEEEECCC
Q 020461          100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ--GRINRAVWGPLNRTIISAGEDAIVRIWDTET  177 (326)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~  177 (326)
                                                                  .|.  -..+++.++++++++++.++...|..|.+..
T Consensus       154 --------------------------------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~  189 (344)
T KOG4532|consen  154 --------------------------------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD  189 (344)
T ss_pred             --------------------------------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence                                                        011  1256788999999999999999999998854


Q ss_pred             C-ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe------eccceEEEEeCCCCCe--eE
Q 020461          178 G-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------TERPVNAVTMSPLLDH--VV  248 (326)
Q Consensus       178 ~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~s~~~~~--~~  248 (326)
                      . +.+.. .....-+..-.+..|+.+...+|++..||++.|||+|.........      +.+.+..+-|++.+..  ++
T Consensus       190 ~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf  268 (344)
T KOG4532|consen  190 ESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLF  268 (344)
T ss_pred             ccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEE
Confidence            3 22221 1111223334677899999999999999999999998754332221      3456888888875543  33


Q ss_pred             EecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc-eeEEEECCCCceEEeecCC
Q 020461          249 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPDGKSFSSGGED  309 (326)
Q Consensus       249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~s~d~~~lat~s~D  309 (326)
                      .+  +.-..+...|.|.+.-...+.-.. .    ....|... |..-.|+.++....+.+++
T Consensus       269 ~s--Ehfs~~hv~D~R~~~~~q~I~i~~-d----~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  269 IS--EHFSRVHVVDTRNYVNHQVIVIPD-D----VERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             Ee--cCcceEEEEEcccCceeeEEecCc-c----ccccccccccccccccCCCcccccccch
Confidence            33  333344556666554322111100 0    12234433 6777777766665555544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=2.2e-08  Score=83.20  Aligned_cols=214  Identities=17%  Similarity=0.223  Sum_probs=142.2

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCC---CCeeeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEEEEccCC
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETG   84 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~---~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~   84 (326)
                      |.+.|+.+. ..-.+++.+++.||.++.|.-..   -+.+..+..|-+.|.+++.+.++..+.|.+. |..+|++|+..-
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            677776654 34578999999999999996433   2556778899999999999999999999777 999999998765


Q ss_pred             cEEEEEecCCCcceeee--ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           85 AQLFTFNFDSPARSVDF--AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ..+.-+........+.|  .+++....+..+.+  -+..+.+.    +......+....-+-|.++|.++.+.|.+..++
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~--~sg~i~Vv----D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v  160 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLF--KSGKIFVV----DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV  160 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecc--cCCCcEEE----CCcCCcCccceecccccCceEEEEeecccccee
Confidence            43322222222222222  34444332221110  00111111    111112233444566889999999999999999


Q ss_pred             EeeCCCcEEEEECCC-Cccccc-ccc----------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          163 SAGEDAIVRIWDTET-GKLLKE-SDK----------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       163 s~~~d~~i~~wd~~~-~~~~~~-~~~----------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      +....|.|.-|..+. -+.... +..          ..-......++.++|++..+.+-+.|..|++++.++++.++.+
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            999999999998762 111111 111          1122456789999999999999999999999999998766654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=3.7e-06  Score=72.10  Aligned_cols=271  Identities=16%  Similarity=0.239  Sum_probs=160.5

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC-----------CcEEEEEcc
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----------QTAKLWNVE   82 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-----------~~i~~wd~~   82 (326)
                      +.+.|||.|.||+|=-.-|. .+|--++-..++.|. |. .|.-++|||..+||+|-|..           ..+.+||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI-~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGI-ALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccce-eeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            68999999999999877654 689766555555552 33 57889999999999997642           568999999


Q ss_pred             CCcEEEEEecC-C--Cc-ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc---CccceeEEEEe
Q 020461           83 TGAQLFTFNFD-S--PA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---PQGRINRAVWG  155 (326)
Q Consensus        83 ~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~  155 (326)
                      +|.....|... .  .. .-+.|+.+++.++......+.+...-.               ...+.+   .-..|....|+
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~Fsws  355 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWS  355 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccC
Confidence            99887766541 1  11 234678888887765443222211110               111111   12456777889


Q ss_pred             cCCcEEEEee--CC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe----------CCCeEEEeec
Q 020461          156 PLNRTIISAG--ED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS----------LDKSAKLWDA  220 (326)
Q Consensus       156 ~~~~~l~s~~--~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s----------~dg~i~iwd~  220 (326)
                      |.+..||.=.  .+   .++.+-.+.+++.+++...   |.-.=+.+-|-.+|.+|..--          .=..+.|+.+
T Consensus       356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri  432 (698)
T KOG2314|consen  356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI  432 (698)
T ss_pred             CCcceEEEEcccccCCcceEEEEecCccceeeeccc---eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence            9877776421  11   2456666666655554321   222223455777777776422          1123556665


Q ss_pred             CCcce-EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc----eeeeccccccCcceeEEE
Q 020461          221 RTLEL-IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL----QEEIGGVKGHFGPINALA  295 (326)
Q Consensus       221 ~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~v~  295 (326)
                      +..+. +........+-..+|-|.|+.+++-.+....           ..+.+|...+    ...+..+.  ....+.+-
T Consensus       433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k-----------~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vf  499 (698)
T KOG2314|consen  433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK-----------NTVSFYAVETNIKKPSLVKELD--KKFANTVF  499 (698)
T ss_pred             eccCCCceeeecchheeeeeeccCCCeEEEEEccccc-----------cceeEEEeecCCCchhhhhhhc--ccccceEE
Confidence            54332 2333344567788899999987765554431           1223332221    11111121  13468899


Q ss_pred             ECCCCceEEee---cCCCcEEEeecC
Q 020461          296 FNPDGKSFSSG---GEDGYVRLHHFD  318 (326)
Q Consensus       296 ~s~d~~~lat~---s~Dg~i~l~~~~  318 (326)
                      |+|.|++++.+   |..|.+.+.+.+
T Consensus       500 wsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  500 WSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             EcCCCcEEEEEEecccccceEEEecc
Confidence            99999987665   557888885554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.85  E-value=3.8e-05  Score=64.95  Aligned_cols=117  Identities=21%  Similarity=0.274  Sum_probs=81.8

Q ss_pred             CcceeeEEEEEcCCCCeEEEEeCCC-eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce
Q 020461          189 GHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK  267 (326)
Q Consensus       189 ~h~~~v~~v~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~  267 (326)
                      +|...|.=..+..++.-++.|..|| .+-++|.++++..+....-..+.++..+++|..++++  ++...+...|...+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva--Ndr~el~vididngn  434 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA--NDRFELWVIDIDNGN  434 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE--cCceEEEEEEecCCC
Confidence            3445555555666777789999999 8999999999876666666789999999999887765  333333333332222


Q ss_pred             eeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC----cEEEeecCC
Q 020461          268 FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG----YVRLHHFDP  319 (326)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg----~i~l~~~~~  319 (326)
                      ..  .        +  -+...+-|+.++|+|+++++|-+-.+|    .|+|++.+.
T Consensus       435 v~--~--------i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         435 VR--L--------I--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             ee--E--------e--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            11  1        1  123446799999999999999998876    567777665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.84  E-value=1.9e-07  Score=75.15  Aligned_cols=231  Identities=16%  Similarity=0.244  Sum_probs=132.9

Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE-EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccC
Q 020461           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD  130 (326)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (326)
                      ..-|.++.|...|++|++|..+|.|-++.-..... .+.+...               ..+.++.+..            
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~---------------fqshepEFDY------------   77 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTE---------------FQSHEPEFDY------------   77 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeee---------------eeccCcccch------------
Confidence            44688999999999999999999998885432110 0000000               0000000000            


Q ss_pred             CCCCCCceEEEeccCccceeEEEEecCC--cEEEEeeCCCcEEEEECCCCcccc---------------c--c-------
Q 020461          131 PADQGGESVLILKGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTETGKLLK---------------E--S-------  184 (326)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~---------------~--~-------  184 (326)
                              +..+ .-...|+.+.|.+++  ..++...+|.+|++|.+.......               .  +       
T Consensus        78 --------LkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~  148 (433)
T KOG1354|consen   78 --------LKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHD  148 (433)
T ss_pred             --------hhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccc
Confidence                    0000 012346667776655  367788899999999875322111               0  0       


Q ss_pred             ---------ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe---e------ccceEEEEeCCCCCe
Q 020461          185 ---------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---T------ERPVNAVTMSPLLDH  246 (326)
Q Consensus       185 ---------~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~------~~~~~~~~~s~~~~~  246 (326)
                               ....+|..-|.++.+..|+..++++. |=.|-+|++.-...-..+.   +      ..-+++..|+|....
T Consensus       149 ~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn  227 (433)
T KOG1354|consen  149 LEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN  227 (433)
T ss_pred             ceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc
Confidence                     00136888899999999999888876 6679999986432211111   1      123678889998766


Q ss_pred             eEEecCCCcceeEeecccCceee---eEeeccc-ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          247 VVLGGGQDASAVTTTDHRAGKFE---AKFFDKI-LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +++-.+..+ .+...|.|...+.   .+++... .+....-+.+-.+-|.++.|+++|+|+++=+ =-+|+||++.++-
T Consensus       228 ~f~YSSSKG-tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~  304 (433)
T KOG1354|consen  228 VFVYSSSKG-TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEA  304 (433)
T ss_pred             EEEEecCCC-cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccC
Confidence            555433322 3445565532221   1222211 1111122233345688999999999998543 2799999996553

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.84  E-value=2.3e-07  Score=74.67  Aligned_cols=211  Identities=16%  Similarity=0.206  Sum_probs=137.8

Q ss_pred             CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc-cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceece
Q 020461           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS  120 (326)
Q Consensus        42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (326)
                      ..+.+.++||...|+....-|...-+++.+.|.++|+|-= +.++..-.+.                             
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----------------------------   64 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----------------------------   64 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-----------------------------
Confidence            3456678899999998777777778999999999999942 2221110000                             


Q ss_pred             eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECC-CCccccccccccCcceeeEEEEE
Q 020461          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                                            -...+++..+.+++..+.|+.|-.+|++.-+... .............|...+..+.+
T Consensus        65 ----------------------~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if  122 (404)
T KOG1409|consen   65 ----------------------HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVF  122 (404)
T ss_pred             ----------------------hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEe
Confidence                                  0112445666777777888889889988877652 12222222333578999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceee-eEeecccce
Q 020461          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE-AKFFDKILQ  278 (326)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~  278 (326)
                      +.....+++.+.|..+.--..+++..+..+.......+..+.-.  ..+++  +          ..+... .++. .+..
T Consensus       123 ~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG--d----------~~gqvt~lr~~-~~~~  187 (404)
T KOG1409|consen  123 SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG--D----------HSGQITMLKLE-QNGC  187 (404)
T ss_pred             cCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec--c----------cccceEEEEEe-ecCC
Confidence            99999999999999888777777666555443322211111110  11111  1          111111 2222 2233


Q ss_pred             eeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          279 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       279 ~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      ..+..+.+|.+.+.+++|.|....|.+|..|..+.+|++.
T Consensus       188 ~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  188 QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence            4456678999999999999999999999999999999874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.81  E-value=7.8e-08  Score=76.39  Aligned_cols=254  Identities=16%  Similarity=0.220  Sum_probs=140.1

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-----eeeeccCcc------------cceEEEEEcCCC--CeEEEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHN------------GAVWCCDVSRDS--MTLITG   70 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-----~~~~~~~h~------------~~V~~~~~~~~~--~~l~s~   70 (326)
                      .+-|+++-|...|.||++|...|.|.++..+...     ...+|++|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3568999999999999999999999999765432     223455554            346777776544  357777


Q ss_pred             eCCCcEEEEEccCCcEEEEEe------cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE-Eec
Q 020461           71 SADQTAKLWNVETGAQLFTFN------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILK  143 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  143 (326)
                      ..|++|++|-+........-+      +..+..+               +.... ..+...++......-...+.+ ...
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g---------------~~~s~-~~l~lprls~hd~iiaa~p~rvyaN  169 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGG---------------PLTST-KELLLPRLSEHDEIIAAKPCRVYAN  169 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCC---------------CcCCH-HHhhcccccccceEEEeccceeccc
Confidence            899999999886542211111      1111000               00000 000000000000000001111 124


Q ss_pred             cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCc-----ceeeEEEEEcCCC-CeEEEEeCCCeEEE
Q 020461          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-----KKTITSLAKAADG-SHFLTGSLDKSAKL  217 (326)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h-----~~~v~~v~~s~~~-~~l~s~s~dg~i~i  217 (326)
                      .|.--|+++.++.+.+.++++ .|-+|.+|.+.-......+-...+|     ...|++..|+|.. ..+.-.+..|+|++
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            566678899999988888865 5778999987532111111001122     2346777788753 35666777899999


Q ss_pred             eecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461          218 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (326)
Q Consensus       218 wd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  297 (326)
                      -|+|...+-..   ..........                                    +.....+.+-.+.|..+.|+
T Consensus       249 ~DlRq~alcdn---~~klfe~~~D------------------------------------~v~~~ff~eivsSISD~kFs  289 (460)
T COG5170         249 NDLRQSALCDN---SKKLFELTID------------------------------------GVDVDFFEEIVSSISDFKFS  289 (460)
T ss_pred             hhhhhhhhccC---chhhhhhccC------------------------------------cccchhHHHHhhhhcceEEc
Confidence            99985321000   0000000000                                    00001112223458889999


Q ss_pred             CCCceEEeecCCCcEEEeecCCC
Q 020461          298 PDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       298 ~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +.|+++++-+ =-+|+||++.++
T Consensus       290 ~ngryIlsRd-yltvkiwDvnm~  311 (460)
T COG5170         290 DNGRYILSRD-YLTVKIWDVNMA  311 (460)
T ss_pred             CCCcEEEEec-cceEEEEecccc
Confidence            9999998655 368999998765

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=9.3e-09  Score=92.17  Aligned_cols=186  Identities=16%  Similarity=0.189  Sum_probs=125.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe-CCC-cEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQ-TAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~-~i~~wd~   81 (326)
                      ..++.|...-+|++|+-+.++|+.|+-.|.|+++++.+|.......+|..+|+-+.=+-||..+++.+ +.. -..+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            56788888899999999999999999999999999999999888999999999998777887655544 333 4678987


Q ss_pred             cC-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461           82 ET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      .. +....+|.-+   .                                                     ++.|+...+.
T Consensus      1175 ~s~~~~~Hsf~ed---~-----------------------------------------------------~vkFsn~~q~ 1198 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDED---K-----------------------------------------------------AVKFSNSLQF 1198 (1516)
T ss_pred             ccccCcccccccc---c-----------------------------------------------------eeehhhhHHH
Confidence            54 1111111100   0                                                     1112111111


Q ss_pred             EEEeeCCCcEEEEECCCCccccc-cccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEE
Q 020461          161 IISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  239 (326)
                      -+.|.......+||+.++..+.+ +....+.+..-....|+|+..+++   +||  -+||++..+.++.|..-..--+-.
T Consensus      1199 r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~ 1273 (1516)
T KOG1832|consen 1199 RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGG 1273 (1516)
T ss_pred             HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccccc
Confidence            12233335578999998877665 333333344456778899887665   344  489999888777764322233456


Q ss_pred             eCCCCCeeEEe
Q 020461          240 MSPLLDHVVLG  250 (326)
Q Consensus       240 ~s~~~~~~~~~  250 (326)
                      |+|.+..+++-
T Consensus      1274 FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1274 FHPSGNEVIIN 1284 (1516)
T ss_pred             ccCCCceEEee
Confidence            89998888763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.78  E-value=3.9e-05  Score=62.71  Aligned_cols=235  Identities=17%  Similarity=0.161  Sum_probs=136.7

Q ss_pred             CCCeEEEecCCC--Ce-eeeccCcccceEEEEEcCCCCeEEEEeCC---CcEEEEEccC--CcEEEEEecCCCcceeeee
Q 020461           31 DHTPTVWFADNG--ER-LGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVET--GAQLFTFNFDSPARSVDFA  102 (326)
Q Consensus        31 d~~v~iw~~~~~--~~-~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~  102 (326)
                      +.-|.+|++.+.  +. ....-.+.+...=++|+|+.+.|.++..+   |.|-.|.++.  |+....-+.          
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~----------   84 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ----------   84 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc----------
Confidence            567889987633  22 11233456677789999999999888765   5555555442  222111000          


Q ss_pred             cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEEECCC-Ccc
Q 020461          103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET-GKL  180 (326)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~  180 (326)
                                                            ...  ..+-..+++++++++++++. .-|.|.++-++. |..
T Consensus        85 --------------------------------------~~~--g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l  124 (346)
T COG2706          85 --------------------------------------TLP--GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL  124 (346)
T ss_pred             --------------------------------------ccC--CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence                                                  000  11124567788888777663 467888888854 433


Q ss_pred             ccccccccCccee----------eEEEEEcCCCCeEEEEeC-CCeEEEeecCCcceEEEE----eeccceEEEEeCCCCC
Q 020461          181 LKESDKETGHKKT----------ITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTY----VTERPVNAVTMSPLLD  245 (326)
Q Consensus       181 ~~~~~~~~~h~~~----------v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~s~~~~  245 (326)
                      . .......|.+.          +....+.|++++|++... -..|.+|++..+.+...-    ....-.+-+.|+|+++
T Consensus       125 ~-~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k  203 (346)
T COG2706         125 Q-PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK  203 (346)
T ss_pred             c-cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence            2 22122233333          778889999999998874 346899999876554332    2233467899999998


Q ss_pred             eeEEecCCC-cceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461          246 HVVLGGGQD-ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFDPD  320 (326)
Q Consensus       246 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~  320 (326)
                      ...+..--+ ...+..++...+.++..-.-....+   .+.+ ....-+|..+|||++|.++.. ...|.+|+++++
T Consensus       204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~---dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE---DFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc---ccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            876654322 2223333333333221100000011   1222 234567889999999987755 448888888886

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.78  E-value=1e-05  Score=68.32  Aligned_cols=149  Identities=19%  Similarity=0.213  Sum_probs=108.7

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCC-CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDH-TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~-~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .+..+|...|....+..+++-++.|..|| .+-|++..+++.. .+...-+.|.++..+++|++++.+....-+-+.|++
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            67778999999999999988888999999 8899998777644 455567889999999999999888877777777887


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ++.....-                                                    +...+-|+...|||++++++
T Consensus       432 ngnv~~id----------------------------------------------------kS~~~lItdf~~~~nsr~iA  459 (668)
T COG4946         432 NGNVRLID----------------------------------------------------KSEYGLITDFDWHPNSRWIA  459 (668)
T ss_pred             CCCeeEec----------------------------------------------------ccccceeEEEEEcCCceeEE
Confidence            77543211                                                    11224467788999999998


Q ss_pred             EeeCCC----cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461          163 SAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG  209 (326)
Q Consensus       163 s~~~d~----~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~  209 (326)
                      .+--+|    .|+++|+..++...... ..+|.   .+-+|+||+++|.--
T Consensus       460 YafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~D---fsPaFD~d~ryLYfL  506 (668)
T COG4946         460 YAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYD---FSPAFDPDGRYLYFL  506 (668)
T ss_pred             EecCcceeeeeEEEEecCCCeEEEecC-Ccccc---cCcccCCCCcEEEEE
Confidence            876666    58999998776543221 12222   234677888876543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.77  E-value=1e-05  Score=70.29  Aligned_cols=65  Identities=15%  Similarity=0.157  Sum_probs=45.9

Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      +..++.++.++.+..||.++++..-....    .. .....  .++..++.++.||.+..+|..+++.+-+.
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA----SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeecc----CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence            45677788899999999998876543321    11 11112  24567888889999999999999877554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.75  E-value=1.6e-06  Score=83.83  Aligned_cols=180  Identities=13%  Similarity=0.116  Sum_probs=112.7

Q ss_pred             eeEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeecc---------Ccc------cceEEEEEcCCCCeE-EEEeCCCc
Q 020461           13 LTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR---------GHN------GAVWCCDVSRDSMTL-ITGSADQT   75 (326)
Q Consensus        13 i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~---------~h~------~~V~~~~~~~~~~~l-~s~~~d~~   75 (326)
                      ...++|+| ++.++++.+.++.|++|+..++... .+.         ++.      .....++++|+++.| ++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            35789999 5677888888999999998776532 111         111      134568999998855 45556799


Q ss_pred             EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      |++||+.++........                    ++.... ....+..     .+..+.     ...-.....++++
T Consensus       764 Irv~D~~tg~~~~~~gg--------------------~~~~~~-~l~~fG~-----~dG~g~-----~~~l~~P~Gvavd  812 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGG--------------------DPTFSD-NLFKFGD-----HDGVGS-----EVLLQHPLGVLCA  812 (1057)
T ss_pred             EEEEECCCCcEEEEEec--------------------ccccCc-ccccccC-----CCCchh-----hhhccCCceeeEe
Confidence            99999987653211100                    000000 0000000     000000     0001122467889


Q ss_pred             cCCcEEEEeeCCCcEEEEECCCCcccccccc-----------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDK-----------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       156 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-----------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      ++|..+++-..+++|++||..++.... +..           ..+.-.....++++++|..+++.+.++.|++||+++++
T Consensus       813 ~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        813 KDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            999988888999999999998765432 111           01122356789999999999999999999999999876


Q ss_pred             e
Q 020461          225 L  225 (326)
Q Consensus       225 ~  225 (326)
                      .
T Consensus       892 ~  892 (1057)
T PLN02919        892 A  892 (1057)
T ss_pred             c
Confidence            5

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=1.6e-05  Score=69.48  Aligned_cols=180  Identities=11%  Similarity=0.047  Sum_probs=107.1

Q ss_pred             ceeEEEEccCCCE-EEeecC---CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCc--EEEEEccCC
Q 020461           12 PLTYLKYNKDGDL-LFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--AKLWNVETG   84 (326)
Q Consensus        12 ~i~~~~~s~~~~~-l~s~~~---d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~   84 (326)
                      ....-.|||||+. ++..+.   +..|.++|+.+++...... ..+.+...+|+|||+.++ +.+.++.  |.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            5678899999984 654443   3567778998887644332 455566788999997654 4444443  333344443


Q ss_pred             cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      +....                                                     ..+........|+|+|+.|+..
T Consensus       268 ~~~~L-----------------------------------------------------T~~~~~d~~p~~SPDG~~I~F~  294 (419)
T PRK04043        268 TLTQI-----------------------------------------------------TNYPGIDVNGNFVEDDKRIVFV  294 (419)
T ss_pred             cEEEc-----------------------------------------------------ccCCCccCccEECCCCCEEEEE
Confidence            32110                                                     0000011123689999876654


Q ss_pred             eC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---------CeEEEeecCCcceEEEEeec
Q 020461          165 GE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---------KSAKLWDARTLELIKTYVTE  232 (326)
Q Consensus       165 ~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~  232 (326)
                      ++ .+  .|.+.|+.+++..+...  .+.    ....|+|||++++-.+..         ..|.+.|+.+++. +.+...
T Consensus       295 Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~  367 (419)
T PRK04043        295 SDRLGYPNIFMKKLNSGSVEQVVF--HGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN  367 (419)
T ss_pred             ECCCCCceEEEEECCCCCeEeCcc--CCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC
Confidence            43 33  57777887765533221  111    124899999998866643         2678888887764 334333


Q ss_pred             cceEEEEeCCCCCeeEEecC
Q 020461          233 RPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~~  252 (326)
                      .......|+|+++.++....
T Consensus       368 ~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        368 GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CCcCCeEECCCCCEEEEEEc
Confidence            33345789999998776543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.74  E-value=2.7e-05  Score=67.58  Aligned_cols=265  Identities=16%  Similarity=0.160  Sum_probs=134.0

Q ss_pred             CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceee
Q 020461           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD  100 (326)
Q Consensus        21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  100 (326)
                      .+..++.++.++.+.-+|.++|+.+=..+-.......+..  ++..++.++.++.+..+|..+|+.+..........+.-
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            3667888889999999999999876443322221122222  45678888899999999999999877665433222111


Q ss_pred             eecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccce-----eEEEEecCCcEEEEeeCCCcEEEEEC
Q 020461          101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI-----NRAVWGPLNRTIISAGEDAIVRIWDT  175 (326)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~s~~~d~~i~~wd~  175 (326)
                      ...++.+.+...+..      +...+.      ..++.+...+......     ......  +..++.+..++.+..+|.
T Consensus       142 ~v~~~~v~v~~~~g~------l~a~d~------~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       142 LVANGLVVVRTNDGR------LTALDA------ATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL  207 (377)
T ss_pred             EEECCEEEEECCCCe------EEEEEc------CCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence            112333333222211      111110      0111111111110000     001111  246677888899999999


Q ss_pred             CCCccccccccccCcc----eeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEE
Q 020461          176 ETGKLLKESDKETGHK----KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       176 ~~~~~~~~~~~~~~h~----~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  249 (326)
                      ++|+..-.........    .....+.-+|  .+..++.++.+|.++.+|.++++.+-...... ...  ....++.+++
T Consensus       208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~--p~~~~~~vyv  284 (377)
T TIGR03300       208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQG--PAVDDNRLYV  284 (377)
T ss_pred             cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccC--ceEeCCEEEE
Confidence            8887643221100000    0000111111  24578888899999999999998776554211 111  1123455555


Q ss_pred             ecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +.. ++ .+...|...+..   +|....      +.+  ........  .+..+++++.||.|.+++.+.
T Consensus       285 ~~~-~G-~l~~~d~~tG~~---~W~~~~------~~~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       285 TDA-DG-VVVALDRRSGSE---LWKNDE------LKY--RQLTAPAV--VGGYLVVGDFEGYLHWLSRED  339 (377)
T ss_pred             ECC-CC-eEEEEECCCCcE---EEcccc------ccC--CccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence            432 22 233334333321   222110      000  01111111  366788888999998877543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.73  E-value=2.5e-08  Score=81.57  Aligned_cols=88  Identities=22%  Similarity=0.322  Sum_probs=73.7

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec-cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      +..+.||..-++.++++||+++|.++..|..||+=.....-.+..| -||+..|..++.-+ ++.|+|+|.|+++++||+
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEec
Confidence            4567799999999999999999999999999998766554444444 57999999999865 556899999999999999


Q ss_pred             cCCcEEEEEe
Q 020461           82 ETGAQLFTFN   91 (326)
Q Consensus        82 ~~~~~~~~~~   91 (326)
                      .+|+++..+.
T Consensus       223 ~sgk~L~t~d  232 (390)
T KOG3914|consen  223 TSGKLLDTCD  232 (390)
T ss_pred             ccCCcccccc
Confidence            9998875443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=3.5e-06  Score=72.24  Aligned_cols=101  Identities=17%  Similarity=0.268  Sum_probs=78.9

Q ss_pred             ccceeEEEEecCCcEEE--EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEeec
Q 020461          146 QGRINRAVWGPLNRTII--SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDA  220 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~--s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iwd~  220 (326)
                      .++|.++.|+|.+..|+  .|-.-..+.++|++ +..+..+.     +++-.++-|+|.|.+++-++.+   |.+-+||+
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            58899999999998665  45567789999987 44555442     4567789999999999988764   77999999


Q ss_pred             CCcceEEEEeeccceEEEEeCCCCCeeEEecCC
Q 020461          221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  253 (326)
                      .+.+++..+... ......|+|+|++++++.-.
T Consensus       344 ~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  344 PNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             cchhhccccccC-CceEEEEcCCCcEEEEEecc
Confidence            998888776543 45667899999999877543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.72  E-value=7.7e-05  Score=60.60  Aligned_cols=224  Identities=15%  Similarity=0.092  Sum_probs=131.2

Q ss_pred             EEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEc-CCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           15 YLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        15 ~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      +..|.+ ++.++++--..+.|..|+..+++... +....  ...+.+. +++ .++.+...+ +.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            567888 77778887788999999988775532 22212  5556666 554 555566554 56669988865544433


Q ss_pred             --CC-C---cceeeeecCCeEEEEEcCccce-eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-Ee
Q 020461           93 --DS-P---ARSVDFAVGDKLAVITTDPFME-LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SA  164 (326)
Q Consensus        93 --~~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~  164 (326)
                        .. +   .+.+.+.++..+.+........ ....-.+.++..+     +. +..+.......+-++|+|+++.|+ +-
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----~~-~~~~~~~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----GK-VTVVADGLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----SE-EEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----Ce-EEEEecCcccccceEECCcchheeecc
Confidence              11 1   2334455555554443221110 0000122222221     11 222222344567899999998665 66


Q ss_pred             eCCCcEEEEECCCCcc-cc---ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEE
Q 020461          165 GEDAIVRIWDTETGKL-LK---ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVT  239 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~~-~~---~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~  239 (326)
                      +..+.|..+++..... +.   .+.....-....-.++++.+|...++....+.|..+|.+ ++.+..+..+ ..+.+++
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence            7788899999853222 21   111111112347789999999988888888999999998 8888887655 5788888


Q ss_pred             e-CCCCCeeEEe
Q 020461          240 M-SPLLDHVVLG  250 (326)
Q Consensus       240 ~-s~~~~~~~~~  250 (326)
                      | -++.+.++++
T Consensus       232 fgg~~~~~L~vT  243 (246)
T PF08450_consen  232 FGGPDGKTLYVT  243 (246)
T ss_dssp             EESTTSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            8 4666666654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=3.7e-08  Score=79.21  Aligned_cols=125  Identities=18%  Similarity=0.230  Sum_probs=89.1

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCC-----CeeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCC
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-----~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      ..|.++.|...+++++.|..+|.|...|+..+     .+...+ -|...|+++..-. ++++|++.+.+|+|++||.+--
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            45778889999999999999999999998755     233323 4788888876544 6789999999999999998643


Q ss_pred             cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE--EEEecCCcEEE
Q 020461           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR--AVWGPLNRTII  162 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~  162 (326)
                      ++-                                                 ..++..+||.+.-..  +-.++....++
T Consensus       332 K~~-------------------------------------------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~  362 (425)
T KOG2695|consen  332 KCK-------------------------------------------------KSVMQYEGHVNLSAYLPAHVKEEEGSIF  362 (425)
T ss_pred             hcc-------------------------------------------------cceeeeecccccccccccccccccceEE
Confidence            331                                                 112222333222111  11344566888


Q ss_pred             EeeCCCcEEEEECCCCccccccc
Q 020461          163 SAGEDAIVRIWDTETGKLLKESD  185 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~  185 (326)
                      ++|+|...++|.++.+.++.++.
T Consensus       363 s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             EccCeeEEEEEecccCceeeccC
Confidence            99999999999999998887654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=5.7e-07  Score=79.27  Aligned_cols=224  Identities=16%  Similarity=0.219  Sum_probs=135.1

Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCC
Q 020461           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP  131 (326)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (326)
                      .....|++|+....+++.||.||.+|+--+.+...-...      .        .+++.+                    
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~------~--------glaa~s--------------------   59 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK------S--------GLAAAS--------------------   59 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc------c--------cccccc--------------------
Confidence            346789999999999999999999999877654321000      0        000000                    


Q ss_pred             CCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC
Q 020461          132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL  211 (326)
Q Consensus       132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~  211 (326)
                         ....-.++.||.+.|.-+.|+.+.+.|-|...+|.|.+|-+..++...++... .....|.+++|..||..+.-...
T Consensus        60 ---nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNn-RnKSvV~SmsWn~dG~kIcIvYe  135 (1189)
T KOG2041|consen   60 ---NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINN-RNKSVVVSMSWNLDGTKICIVYE  135 (1189)
T ss_pred             ---ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhC-cCccEEEEEEEcCCCcEEEEEEc
Confidence               00011246799999999999999999999999999999999988877665432 34577899999999999888888


Q ss_pred             CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcce
Q 020461          212 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI  291 (326)
Q Consensus       212 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  291 (326)
                      ||.|.+=.+.......+-........+.|+++....+..-..+..-  .+|+ .+.+..++-......-.+.+......|
T Consensus       136 DGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h--lydn-qgnF~~Kl~~~c~Vn~tg~~s~~~~ki  212 (1189)
T KOG2041|consen  136 DGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH--LYDN-QGNFERKLEKDCEVNGTGIFSNFPTKI  212 (1189)
T ss_pred             cCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE--Eecc-cccHHHhhhhceEEeeeeeecCCCccc
Confidence            8887665444332222111122344677888876655443332221  2222 222222221111000011111111123


Q ss_pred             eEEEEC--------CCCceEEeecCCCcEEEee
Q 020461          292 NALAFN--------PDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       292 ~~v~~s--------~d~~~lat~s~Dg~i~l~~  316 (326)
                      -.+.|.        ||...||.|=+.|.+.|-+
T Consensus       213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR  245 (1189)
T KOG2041|consen  213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR  245 (1189)
T ss_pred             cceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence            333332        5788899998888887743

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.67  E-value=1.2e-05  Score=68.27  Aligned_cols=145  Identities=12%  Similarity=0.106  Sum_probs=93.8

Q ss_pred             cCccceeEEEEecCCcEEEE--eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEe
Q 020461          144 GPQGRINRAVWGPLNRTIIS--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLW  218 (326)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iw  218 (326)
                      +..++|....|.|.+..|++  |-.+-.+.++|++.. ...-     ..+..-..+.|+|.+.+++.++.|   |.+-+|
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~-----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~  345 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY-----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF  345 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccc-eEEe-----cCCcccccccccCcccEEEEecCCccccceEEe
Confidence            55678999999999886654  457889999999754 3221     223445667899999999998876   569999


Q ss_pred             ecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461          219 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (326)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  298 (326)
                      |......+..-........+.|+|++....+..-....       + -...+++|+.....       | ...+.+.|.|
T Consensus       346 ~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~-------~-~Dn~i~l~~v~g~~-------~-fel~~~~W~p  409 (561)
T COG5354         346 DPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKL-------R-VDNSIKLWDVYGAK-------V-FELTNITWDP  409 (561)
T ss_pred             ccCCceEEEEEeecCCceEeeccCCceEEEecCCCccc-------c-cCcceEEEEecCch-------h-hhhhhccccC
Confidence            98765443322223455667899999877665322210       0 11134555533211       1 1456788888


Q ss_pred             CCceEEeecCCC
Q 020461          299 DGKSFSSGGEDG  310 (326)
Q Consensus       299 d~~~lat~s~Dg  310 (326)
                      .|++..|.|.+.
T Consensus       410 ~~~~~ttsSs~~  421 (561)
T COG5354         410 SGQYVTTSSSCP  421 (561)
T ss_pred             CcccceeeccCC
Confidence            888877777665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.66  E-value=1.4e-06  Score=68.78  Aligned_cols=155  Identities=16%  Similarity=0.223  Sum_probs=105.4

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      ..++.|++.+.-+++.-.+|.+.+-+.....  .+++++.|.-+.|...|+. +.+.+++||.|+.+.-||++-.+ .+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i  202 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI  202 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence            3578899999999999999999855544443  3458899999999999976 34689999999999999987332 111


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeCCC
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDA  168 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~  168 (326)
                      +..                                                 .+-|...|.++.-+| .+.+++||+-|.
T Consensus       203 ~~n-------------------------------------------------~kvH~~GV~SI~ss~~~~~~I~TGsYDe  233 (339)
T KOG0280|consen  203 WHN-------------------------------------------------SKVHTSGVVSIYSSPPKPTYIATGSYDE  233 (339)
T ss_pred             eec-------------------------------------------------ceeeecceEEEecCCCCCceEEEecccc
Confidence            110                                                 012344455554444 456899999999


Q ss_pred             cEEEEECC-CCccccccccccCcceeeEEEEEcCCC--CeEEEEeCCCeEEEeecCC
Q 020461          169 IVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       169 ~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~--~~l~s~s~dg~i~iwd~~~  222 (326)
                      .|++||.+ -++++..-    .-.+.|.-+..+|.-  ..|+++-.+| .++-+...
T Consensus       234 ~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  234 CIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD  285 (339)
T ss_pred             ceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence            99999997 45554432    223678888888753  2344444544 45555543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.64  E-value=6.3e-05  Score=65.80  Aligned_cols=158  Identities=10%  Similarity=0.029  Sum_probs=85.9

Q ss_pred             EEEEecCCcEEE-EeeC--CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CC--eEEEeecCCcc
Q 020461          151 RAVWGPLNRTII-SAGE--DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLE  224 (326)
Q Consensus       151 ~~~~~~~~~~l~-s~~~--d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i~iwd~~~~~  224 (326)
                      ...|+|+++.++ +.+.  +..|.++|+.+++.. .+..   +........|+|||+.|+-.+. .+  .|.+.|+.+++
T Consensus       237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITN---YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-Eccc---CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            346889887554 3333  346777788776533 2221   2222334579999988776653 33  58888888776


Q ss_pred             eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEE
Q 020461          225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS  304 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la  304 (326)
                      ..+-..... . ...++|+++.++........     +...+...+.+.+...+.. ..+... +......|+|||+.++
T Consensus       313 ~~rlt~~g~-~-~~~~SPDG~~Ia~~~~~~~~-----~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~  383 (419)
T PRK04043        313 VEQVVFHGK-N-NSSVSTYKNYIVYSSRETNN-----EFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIM  383 (419)
T ss_pred             eEeCccCCC-c-CceECCCCCEEEEEEcCCCc-----ccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEE
Confidence            533322221 2 24899999988776543210     0000112344443322221 112211 2234588999999876


Q ss_pred             eecC-CCcEEEeecCCCc
Q 020461          305 SGGE-DGYVRLHHFDPDY  321 (326)
Q Consensus       305 t~s~-Dg~i~l~~~~~~~  321 (326)
                      -.+. .+.-.|+.++-+.
T Consensus       384 f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        384 FIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEEccCCcEEEEEEecCC
Confidence            6554 3455566665544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=5.3e-05  Score=61.15  Aligned_cols=216  Identities=21%  Similarity=0.242  Sum_probs=121.9

Q ss_pred             CCCeEEEecCCCCeeeeccC---cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeE
Q 020461           31 DHTPTVWFADNGERLGTYRG---HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL  107 (326)
Q Consensus        31 d~~v~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (326)
                      +|+|..||..+|+.+-...-   ..+.+..  ..+++..+++++.++.+..||..+|+.+..+..+.+....        
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--------   71 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT--AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--------   71 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET--EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--------
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce--EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--------
Confidence            57788888888877654432   2222321  2235667888899999999999999887666543221110        


Q ss_pred             EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccc
Q 020461          108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE  187 (326)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  187 (326)
                                                    +                ...+..++.+..++.|..+|.++|+..-.....
T Consensus        72 ------------------------------~----------------~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~  105 (238)
T PF13360_consen   72 ------------------------------P----------------VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT  105 (238)
T ss_dssp             ------------------------------E----------------EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred             ------------------------------e----------------eecccccccccceeeeEecccCCcceeeeeccc
Confidence                                          0                001334555667778999998888876552111


Q ss_pred             c-CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccce-----------EEEEeCCCCCeeEEecCCCc
Q 020461          188 T-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV-----------NAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       188 ~-~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~s~~~~~~~~~~~~~~  255 (326)
                      . .-...........++..++.+..++.|..+|+++|+.+-+.....+.           ..-.....+ .++++..+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~  184 (238)
T PF13360_consen  106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR  184 (238)
T ss_dssp             SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSS
T ss_pred             cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCe
Confidence            1 00011122222333778899998999999999999998887543211           111112222 4444443332


Q ss_pred             ceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          256 SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                       .+.. |...+.   ..|...           ...+... ..+++..|+.++.|+.|..|+....
T Consensus       185 -~~~~-d~~tg~---~~w~~~-----------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  185 -VVAV-DLATGE---KLWSKP-----------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             -EEEE-ETTTTE---EEEEEC-----------SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred             -EEEE-ECCCCC---EEEEec-----------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence             2222 544443   113111           0112221 3356777777779999999877654

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.62  E-value=1.5e-05  Score=63.15  Aligned_cols=189  Identities=17%  Similarity=0.199  Sum_probs=109.5

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc------C-cccceEEEEEcCC------CCeEEEEeCCCcEEEEE
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------G-HNGAVWCCDVSRD------SMTLITGSADQTAKLWN   80 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~------~-h~~~V~~~~~~~~------~~~l~s~~~d~~i~~wd   80 (326)
                      ..++||||+.+||.+...|+|+++|+...++. .+.      + -..+|-.+.|-+.      ...|+.-..+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            57899999999999999999999998754432 222      1 1235666666332      22566777888888776


Q ss_pred             ccC-----CcEEEEEec----CCCcceeeeecCCeEEEEEcCcccee------ceeeeeeeeccCCCCCCCceEEEeccC
Q 020461           81 VET-----GAQLFTFNF----DSPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPADQGGESVLILKGP  145 (326)
Q Consensus        81 ~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (326)
                      +..     .+....+.+    ...+..+.+.++..+.++++......      ...+..|++..+               
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------------  190 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------------  190 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC---------------
Confidence            532     223334433    34566677777777666655432110      001112222111               


Q ss_pred             ccceeEEEEecCCcEEEEeeCCCc------EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461          146 QGRINRAVWGPLNRTIISAGEDAI------VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~s~~~d~~------i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd  219 (326)
                               .|..+ .++..+|+.      -.+|.+-+.+...   ........|..+..||||..||+...+|.|.+|+
T Consensus       191 ---------~Pyyk-~v~~~~~~~~~~~~~~~~~~~~~~~~fs---~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  191 ---------SPYYK-QVTSSEDDITASSKRRGLLRIPSFKFFS---RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             ---------CCcEE-EccccCccccccccccceeeccceeeee---ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence                     11111 122222221      1233322221111   1112346789999999999999999999999999


Q ss_pred             cCCcceEEEEee
Q 020461          220 ARTLELIKTYVT  231 (326)
Q Consensus       220 ~~~~~~~~~~~~  231 (326)
                      +=+..+.+++..
T Consensus       258 iPsL~~~~~W~~  269 (282)
T PF15492_consen  258 IPSLRLQRSWKQ  269 (282)
T ss_pred             cCcchhhcccch
Confidence            877776666653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=2.7e-07  Score=74.34  Aligned_cols=165  Identities=10%  Similarity=0.128  Sum_probs=107.7

Q ss_pred             EEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461           17 KYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (326)
Q Consensus        17 ~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~   94 (326)
                      +|+-+  |-. ++.+.+..|-+-|+++|-.. .|. -.+.|.++.|...+++++.|+..|.|...|++.+.+       +
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-------G  287 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-------G  287 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-------C
Confidence            55533  334 66677777888888776543 333 466788888988788999999999999999875411       0


Q ss_pred             CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeCCCcEEEE
Q 020461           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW  173 (326)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~~w  173 (326)
                      ..                                         .....-.|.+.|+++..-. .+++|...+-+|+|++|
T Consensus       288 ~~-----------------------------------------~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  288 NG-----------------------------------------WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             CC-----------------------------------------cceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence            00                                         0000112444555554433 46788888999999999


Q ss_pred             ECCCCccccccccccCcceee--EEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461          174 DTETGKLLKESDKETGHKKTI--TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (326)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v--~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  232 (326)
                      |.+.-++-..+..-.||-..-  .-+-..+....+++++.|-..|||.++.+.++.+++.+
T Consensus       327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            998655522222223553221  22234556667888999999999999999998887644

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.56  E-value=1.1e-06  Score=68.32  Aligned_cols=152  Identities=17%  Similarity=0.199  Sum_probs=92.5

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccc-cccCcceeeEEEEEcCCCCeEEEEeC-----CCeEEEeecCCcceEEE-E
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKT-Y  229 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~-~  229 (326)
                      .+.-+++++.||.+.+++.+.  ...... ....|.+. -+.++-..+..+.++..     =+..+.|+++....+.. .
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK  176 (319)
T ss_pred             cCCceEecCCCceEEEEechH--HHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence            355689999999999998764  111110 01111111 11122233444443321     23456677654332211 1


Q ss_pred             eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEEeecC
Q 020461          230 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSGGE  308 (326)
Q Consensus       230 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~lat~s~  308 (326)
                      .....+.+++-+|..++++++|.+++. +..+|.|...           -++..++.|..+|+.+-|+| ++..|.++++
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~-----------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se  244 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVA-----------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE  244 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCe-EEEEEccccc-----------chHHHHHHhhhhhhheeccCCCchheeEecC
Confidence            223348899999999999988877653 4555554432           23455778999999999998 5678999999


Q ss_pred             CCcEEEeecCCCcee
Q 020461          309 DGYVRLHHFDPDYFN  323 (326)
Q Consensus       309 Dg~i~l~~~~~~~~~  323 (326)
                      ||.+.-|+--..++.
T Consensus       245 dGslw~wdas~~~l~  259 (319)
T KOG4714|consen  245 DGSLWHWDASTTFLS  259 (319)
T ss_pred             CCcEEEEcCCCceEE
Confidence            999877766544543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.55  E-value=6.2e-06  Score=64.23  Aligned_cols=73  Identities=25%  Similarity=0.339  Sum_probs=59.3

Q ss_pred             ceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCC
Q 020461          148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       148 ~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      .|.+++-+|..+ .+++|++||.+-+||.+.......  ....|..++..+-|+| ++..|+++++||.+-.||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S--~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS--LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHH--HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            377888888765 667889999999999987644332  2357999999999997 577899999999999999764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.52  E-value=0.0003  Score=67.42  Aligned_cols=273  Identities=16%  Similarity=0.140  Sum_probs=146.5

Q ss_pred             ceeEEEEccCCCEEE-e-ecCCC--CeEEEecCCC---Ceeeecc-----CcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461           12 PLTYLKYNKDGDLLF-S-CAKDH--TPTVWFADNG---ERLGTYR-----GHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~-s-~~~d~--~v~iw~~~~~---~~~~~~~-----~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w   79 (326)
                      .+...+|.+..+.+. + +....  .+.+......   +.+..+.     ...+.|.++.+-++...++.+..+|-|-+.
T Consensus        23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~  102 (928)
T PF04762_consen   23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV  102 (928)
T ss_pred             ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence            466778887665433 3 32322  2333322222   1233343     234578889988888888888889988888


Q ss_pred             ----EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           80 ----NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        80 ----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                          +..+.+.-..-..+..+.+..|+|++.++++.++....+.....+.                      ++.....+
T Consensus       103 ~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd----------------------~i~E~~l~  160 (928)
T PF04762_consen  103 REDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD----------------------PISEVPLD  160 (928)
T ss_pred             EccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce----------------------EEEEeecC
Confidence                6655554444456777888888888776665543211111111100                      01111111


Q ss_pred             cC---CcEEEEeeCCCcEEEEECCCCccc----c--cc-----ccccCcceeeEEEEEcCCCCeEEEEeC---C---CeE
Q 020461          156 PL---NRTIISAGEDAIVRIWDTETGKLL----K--ES-----DKETGHKKTITSLAKAADGSHFLTGSL---D---KSA  215 (326)
Q Consensus       156 ~~---~~~l~s~~~d~~i~~wd~~~~~~~----~--~~-----~~~~~h~~~v~~v~~s~~~~~l~s~s~---d---g~i  215 (326)
                      ++   ....++.|+...=.=|.=..|+..    +  +.     .... +...-..++|-.||.++|+.+.   +   ..+
T Consensus       161 ~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i  239 (928)
T PF04762_consen  161 SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVI  239 (928)
T ss_pred             ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence            11   011222222111000000000000    0  00     0001 2334568899999999998875   3   479


Q ss_pred             EEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc----cccCcc
Q 020461          216 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV----KGHFGP  290 (326)
Q Consensus       216 ~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----~~h~~~  290 (326)
                      |+|+.. |+.-..-. ...--.+++|.|.|+.++.+-..           .....+.||+++- ...+.+    ......
T Consensus       240 RVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-----------~~~~~VvFfErNG-LrhgeF~l~~~~~~~~  306 (928)
T PF04762_consen  240 RVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL-----------PDRHDVVFFERNG-LRHGEFTLRFDPEEEK  306 (928)
T ss_pred             EEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc-----------CCCcEEEEEecCC-cEeeeEecCCCCCCce
Confidence            999976 54433322 23345688999999876655321           1223455555432 111111    123457


Q ss_pred             eeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          291 INALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       291 v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      |..+.||+|+..||.--.|. |.||..-+..
T Consensus       307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             eeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            99999999999999987666 9999876543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=5.2e-06  Score=68.47  Aligned_cols=80  Identities=11%  Similarity=0.233  Sum_probs=71.2

Q ss_pred             eeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEcc
Q 020461            5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~   82 (326)
                      ++.+|...|..++|||..+ ++..++.+.+|+|.|+++..++..+..| .++|+++|.-|. ++++.|...|.|-+||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            5677888999999999887 7888999999999999999999999888 899999998765 578889999999999997


Q ss_pred             CCc
Q 020461           83 TGA   85 (326)
Q Consensus        83 ~~~   85 (326)
                      ..+
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.40  E-value=3.7e-06  Score=76.18  Aligned_cols=146  Identities=17%  Similarity=0.218  Sum_probs=101.1

Q ss_pred             ccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC---------CCcEEEEEccCCcEEEE
Q 020461           19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---------DQTAKLWNVETGAQLFT   89 (326)
Q Consensus        19 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~   89 (326)
                      -.+++++++|...|+|.+-|..+.+.++++.+|++.|...+.  .|+.|++||.         |..|+|||++..+.+.-
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            356889999999999999999999999999999999987655  5889999986         45578888876554321


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCCC
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDA  168 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~  168 (326)
                      +++....                                                     .-+.|+|. ...++.++..|
T Consensus       262 I~~~~~P-----------------------------------------------------~flrf~Psl~t~~~V~S~sG  288 (1118)
T KOG1275|consen  262 IQFPYGP-----------------------------------------------------QFLRFHPSLTTRLAVTSQSG  288 (1118)
T ss_pred             cccccCc-----------------------------------------------------hhhhhcccccceEEEEeccc
Confidence            1111000                                                     01223332 23566777788


Q ss_pred             cEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461          169 IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (326)
Q Consensus       169 ~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd  219 (326)
                      ...+-|..+ +............+..+.++++|+++..++-|..+|.|.+|-
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            888877322 111111111112344589999999999999999999999997

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.39  E-value=1.1e-06  Score=77.73  Aligned_cols=82  Identities=17%  Similarity=0.363  Sum_probs=60.6

Q ss_pred             eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCC-eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      .++.||..+|+.+-|+|.. ..|++|+.|..|-.||..... .+..+..-...-..+.|+.....+++.+..+-|++||.
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            4688999999999999875 589999999999999987764 35555443334455778764444455566677999998


Q ss_pred             cCCc
Q 020461           82 ETGA   85 (326)
Q Consensus        82 ~~~~   85 (326)
                      +.|.
T Consensus       188 r~gs  191 (1081)
T KOG0309|consen  188 RKGS  191 (1081)
T ss_pred             cCCC
Confidence            7653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.39  E-value=0.00012  Score=59.70  Aligned_cols=183  Identities=20%  Similarity=0.271  Sum_probs=104.5

Q ss_pred             EEEEccCCCEEEeecC-----CCCeEEEecC-CCCeeeeccCcccceEEEEEcCCCCeEEEEeC-------CCcEEE---
Q 020461           15 YLKYNKDGDLLFSCAK-----DHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-------DQTAKL---   78 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~-----d~~v~iw~~~-~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-------d~~i~~---   78 (326)
                      ...||+||++|++.-+     .|.|-|||.. +-+.+.+|..|.-.=..+.+.||++.|+.+..       .|.-|+   
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            5689999999998654     5889999998 55778888876544455668899977766542       123333   


Q ss_pred             --------EEccCCcEEEEEecCC-----CcceeeeecCCeEEEEEcCccc--eeceeeeeeeeccCCCCCCCceEEEe-
Q 020461           79 --------WNVETGAQLFTFNFDS-----PARSVDFAVGDKLAVITTDPFM--ELNSAIHVKRIARDPADQGGESVLIL-  142 (326)
Q Consensus        79 --------wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-  142 (326)
                              -|..+|+.+.......     .++-+.+..+..+++.....--  .....+...        ..+.....+ 
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~--------~~g~~~~~~~  206 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH--------RRGGALRLLP  206 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE--------cCCCcceecc
Confidence                    2333444443333311     1222223333333332221000  000000000        011111111 


Q ss_pred             ------ccCccceeEEEEecCCcEE-EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC
Q 020461          143 ------KGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL  211 (326)
Q Consensus       143 ------~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~  211 (326)
                            ..-.+.+-++++++++..+ +|+=.-+.+.+||..+++.+....     ...++.++..+++ +++|.+.
T Consensus       207 ~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  207 APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCCC
Confidence                  2334678999999999866 566778899999999998876542     2457788877777 5555554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.35  E-value=0.0001  Score=57.97  Aligned_cols=155  Identities=11%  Similarity=0.038  Sum_probs=100.2

Q ss_pred             EEEeecCCCCeEEEecCCCCeeeeccCcccc--eEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE-EEEEecCCCcceee
Q 020461           24 LLFSCAKDHTPTVWFADNGERLGTYRGHNGA--VWCCDVSRDSMTLITGSADQTAKLWNVETGAQ-LFTFNFDSPARSVD  100 (326)
Q Consensus        24 ~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~  100 (326)
                      .+.-++.|+++++.+++-+...  +.-|...  ++.+++++|++++++.+....|..|.+..... +....         
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~---------  198 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY---------  198 (344)
T ss_pred             ceeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE---------
Confidence            3566888999998887654332  2234444  78899999999999999988898888764321 11000         


Q ss_pred             eecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCc-
Q 020461          101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-  179 (326)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-  179 (326)
                                                               .......=-+..|+.....+|++..||++.|||++.-. 
T Consensus       199 -----------------------------------------~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  199 -----------------------------------------EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             -----------------------------------------ecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence                                                     00000111234577777889999999999999997533 


Q ss_pred             cccccc-cccCcceeeEEEEEcCCCCe--EEEEeCCCeEEEeecCCcceEEEEe
Q 020461          180 LLKESD-KETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       180 ~~~~~~-~~~~h~~~v~~v~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      ++.+.. ....|.+.+..+.|++-|..  |.-.=.=+.+.+-|+|++.-.+-+.
T Consensus       238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            322221 12358899999999976553  2222223578999999886655543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=0.00019  Score=65.20  Aligned_cols=192  Identities=12%  Similarity=0.141  Sum_probs=117.0

Q ss_pred             EEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccc-eEEEEEcCCCCeEEEEeCCCc-----EEEEEccCCcEEEEE
Q 020461           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGSADQT-----AKLWNVETGAQLFTF   90 (326)
Q Consensus        17 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~   90 (326)
                      +|++++..+|-|+.+|.|.+.+. .-..++.|+++... |..+..-.+..+|++-+.|+.     +++|+++..+.    
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~----  104 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK----  104 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC----
Confidence            56899999999999999888762 22344788888776 555543333368888887754     89999864310    


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec--cCccceeEEEEecCCcEEEEeeCCC
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGEDA  168 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~  168 (326)
                        ..+..++.                    ..               .+...+  ....++.+++.+.+-+.++.|-.+|
T Consensus       105 --n~sP~c~~--------------------~~---------------ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG  147 (933)
T KOG2114|consen  105 --NNSPQCLY--------------------EH---------------RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG  147 (933)
T ss_pred             --CCCcceee--------------------ee---------------eeeccCCCCCCCcceEEEEEccccEEEEEecCc
Confidence              00000000                    00               000001  1134567788888888999999999


Q ss_pred             cEEEEEC---CCCccccccccccCcceeeEEEEEcCCCCe-EEEEeCCCeEEEeecCCcceEEE-Ee-eccceEEEEeCC
Q 020461          169 IVRIWDT---ETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAVTMSP  242 (326)
Q Consensus       169 ~i~~wd~---~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~s~  242 (326)
                      .|..+.=   +.... +. .....-..+|+.+++..++.. +.++. -..|.+|.+....+... +. ++.+.+|..+++
T Consensus       148 ~V~~~~GDi~RDrgs-r~-~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~  224 (933)
T KOG2114|consen  148 LVICYKGDILRDRGS-RQ-DYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD  224 (933)
T ss_pred             EEEEEcCcchhcccc-ce-eeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCC
Confidence            9988842   11111 11 111223578999999988887 22333 24688888874432233 32 456789999988


Q ss_pred             CCCeeEEecCC
Q 020461          243 LLDHVVLGGGQ  253 (326)
Q Consensus       243 ~~~~~~~~~~~  253 (326)
                      ....+++++++
T Consensus       225 ~t~qfIca~~e  235 (933)
T KOG2114|consen  225 GTYQFICAGSE  235 (933)
T ss_pred             CCccEEEecCc
Confidence            77666666543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.31  E-value=2.2e-05  Score=68.33  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      ..+.+.+++++|+...++.|+.||+|.+||.+.+.....     ...-..+.++|+|+|..+++|+.-|.+++||+.-..
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            456789999999999999999999999999876643221     123457889999999999999999999999987544


Q ss_pred             eEEE
Q 020461          225 LIKT  228 (326)
Q Consensus       225 ~~~~  228 (326)
                      ....
T Consensus       333 i~~q  336 (545)
T PF11768_consen  333 IKMQ  336 (545)
T ss_pred             ccee
Confidence            4333

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.31  E-value=1.4e-05  Score=72.64  Aligned_cols=145  Identities=17%  Similarity=0.222  Sum_probs=96.8

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC---------CCeEEEeecCCcceEE
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------DKSAKLWDARTLELIK  227 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~---------dg~i~iwd~~~~~~~~  227 (326)
                      +++++.+|...|+|.+-|.++.+.+.++   ..|++.+..++.  .|+.|+|++.         |.-|++||+|+...+.
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~---~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~  260 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTF---DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS  260 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeee---eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence            4578899999999999999988877766   478888876654  5778998876         5568999999887766


Q ss_pred             EEeeccceEEEEeCCCCCeeEEecCCCc-ceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461          228 TYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG  306 (326)
Q Consensus       228 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~  306 (326)
                      .+........+.|+|.....++..+..+ ....  |.       .-+.... ..+.-.......+..+.+|+.|..+|.|
T Consensus       261 PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v--d~-------~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafg  330 (1118)
T KOG1275|consen  261 PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV--DT-------ATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFG  330 (1118)
T ss_pred             CcccccCchhhhhcccccceEEEEecccceeec--cc-------cccCCCc-cceeEEccCCCcceeEEecCCCceEEEe
Confidence            6554445567778887655443322222 1110  00       0000000 0000011123458999999999999999


Q ss_pred             cCCCcEEEee
Q 020461          307 GEDGYVRLHH  316 (326)
Q Consensus       307 s~Dg~i~l~~  316 (326)
                      ..+|.|.+|.
T Consensus       331 d~~g~v~~wa  340 (1118)
T KOG1275|consen  331 DHEGHVNLWA  340 (1118)
T ss_pred             cccCcEeeec
Confidence            9999999998

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.00017  Score=64.93  Aligned_cols=185  Identities=15%  Similarity=0.177  Sum_probs=120.3

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      .++|.+++  ++.|+-|.-+|.|++.+.. +.. .+...|...      ..+|++++|||.||+|.+-.+-+.+..+.+.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            34555544  6688889999999998754 333 344445443      4579999999999999999999999988899


Q ss_pred             cCCCcceeeeecC-----CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           92 FDSPARSVDFAVG-----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        92 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      +..|..++.+.|+     .+.+++++...+.+...        .+..  ......+....++|.++.|.  |.++|=+++
T Consensus       111 f~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er--------~wlg--nk~~v~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSER--------NWLG--NKDSVVLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             cCCcceeEEeccchhhhhhhheeecCcceEEEehh--------hhhc--CccceeeecCccceEEEEec--CcEEEEecC
Confidence            9999999888875     33444443321111111        1100  01111345567889999996  457888887


Q ss_pred             CCcEEEEECCCCccccccccccC---cceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          167 DAIVRIWDTETGKLLKESDKETG---HKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~---h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      +| |+++|+.+++.+..+.+...   ...-...+.|.++.. |+ -+...+|++..++
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV-IGW~d~v~i~~I~  233 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LV-IGWGDSVKICSIK  233 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EE-EecCCeEEEEEEe
Confidence            77 99999998877665543211   112245667777654 33 3344578888776

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.27  E-value=7.7e-06  Score=65.36  Aligned_cols=82  Identities=17%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             cceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccc-------cccc------cCcceeeEEEEEcCCCCeEEEEeCC
Q 020461          147 GRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKE-------SDKE------TGHKKTITSLAKAADGSHFLTGSLD  212 (326)
Q Consensus       147 ~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~------~~h~~~v~~v~~s~~~~~l~s~s~d  212 (326)
                      ..|++..|+|... .+...+..|.|++-|+++..+.-.       ....      .+--..|..+.|+++|.++++-+. 
T Consensus       222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-  300 (460)
T COG5170         222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-  300 (460)
T ss_pred             HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-
Confidence            3467778888754 566788899999999985332211       0000      112345778899999999998887 


Q ss_pred             CeEEEeecCC-cceEEEE
Q 020461          213 KSAKLWDART-LELIKTY  229 (326)
Q Consensus       213 g~i~iwd~~~-~~~~~~~  229 (326)
                      -+++|||.+. ..++.+.
T Consensus       301 ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         301 LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             ceEEEEecccccCCceee
Confidence            4899999885 3455554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=0.00015  Score=65.20  Aligned_cols=211  Identities=13%  Similarity=0.115  Sum_probs=132.5

Q ss_pred             eeeeecCCceeEEEEccC-----------C-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC---CC-CeE
Q 020461            4 ILMKGHERPLTYLKYNKD-----------G-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---DS-MTL   67 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~-----------~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~---~~-~~l   67 (326)
                      ..+.-|...|+.+.|.|-           . -+||++.-.|.|.+||...+..+-.+..|..+|..+.|-+   +. ..|
T Consensus        49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L  128 (1062)
T KOG1912|consen   49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL  128 (1062)
T ss_pred             hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence            456778888999988863           1 2577777889999999999888888899999998888865   34 466


Q ss_pred             EEEeCCCcEEEEEccCCcEEEEEecCCCc-ceeeeec--CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           68 ITGSADQTAKLWNVETGAQLFTFNFDSPA-RSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        68 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      +.-....++-+|+..+|+......+...+ .++.+.|  ..++++.+.+++......+     .....+..++.......
T Consensus       129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l-----~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL-----GLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc-----CCCCCCCCceeEEEecC
Confidence            66677789999999999987766553332 3344443  2344444444332211110     00111111222221111


Q ss_pred             Ccc-------------------------ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461          145 PQG-------------------------RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       145 ~~~-------------------------~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                      |..                         .....+|+|.-+.++-..-...+.++|++-..++..+...   ++.+.-+++
T Consensus       204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie---r~~akfv~v  280 (1062)
T KOG1912|consen  204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE---RGGAKFVDV  280 (1062)
T ss_pred             ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec---cCCcceeEe
Confidence            110                         0124567888776666667778999999876666554322   233444555


Q ss_pred             cCC--CCeEEEEeCCCeEEEeecCC
Q 020461          200 AAD--GSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       200 s~~--~~~l~s~s~dg~i~iwd~~~  222 (326)
                      -|+  ...|.+.=.||.+.+|-.+.
T Consensus       281 lP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  281 LPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ccCCCcceEEEEecCCeEEEEEeec
Confidence            554  45688999999999997664

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=8.2e-06  Score=68.32  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=105.1

Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcceEEEEeeccceE
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVTERPVN  236 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~  236 (326)
                      .+++++++-||.++.|.-..-.-+.-+.....|...+.+++.+.++-.+.|.+. |..++++|+.+...+..+.......
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg   99 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG   99 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence            468899999999999975421222222334568889999999999999999887 9999999998877665544332222


Q ss_pred             EEEeC-CCC--CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          237 AVTMS-PLL--DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       237 ~~~~s-~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                      .+.|. ..+  ...++.+..+...+...|.+......-.++          .-|..+|..+.++|-+..+.+....|.|.
T Consensus       100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk----------klH~sPV~~i~y~qa~Ds~vSiD~~gmVE  169 (558)
T KOG0882|consen  100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK----------KLHFSPVKKIRYNQAGDSAVSIDISGMVE  169 (558)
T ss_pred             ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec----------ccccCceEEEEeeccccceeeccccceeE
Confidence            22222 112  123333334444555566655443332222          34889999999999999999999999999


Q ss_pred             EeecCCCc
Q 020461          314 LHHFDPDY  321 (326)
Q Consensus       314 l~~~~~~~  321 (326)
                      -|.-++.|
T Consensus       170 yWs~e~~~  177 (558)
T KOG0882|consen  170 YWSAEGPF  177 (558)
T ss_pred             eecCCCcc
Confidence            99999743

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.12  E-value=1.9e-05  Score=68.66  Aligned_cols=76  Identities=11%  Similarity=0.059  Sum_probs=61.8

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      .....+.|.+++|+...|+.|+.||+|.+||...+...  +....=....++|+|+|..+++|+..|.+++||+.-+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            45678899999999999999999999999998665332  22223345779999999999999999999999986543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.07  E-value=0.0026  Score=51.24  Aligned_cols=185  Identities=23%  Similarity=0.212  Sum_probs=100.9

Q ss_pred             cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE-ecCCCcc-
Q 020461           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPAR-   97 (326)
Q Consensus        20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~-   97 (326)
                      +++.++++++.++.+..||..+|+.+-.+.. .+.+..... .++..++.+..++.+..+|..+|+.+... ....+.. 
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            4677778888999999999999987655543 222111111 13445667778889999999999998874 3221111 


Q ss_pred             ---eeeee-cCCeEEEEEcCcc-ceeceeeeeeeeccCCCCCCCceEEEeccCcc----------ceeEEEEecCCcEEE
Q 020461           98 ---SVDFA-VGDKLAVITTDPF-MELNSAIHVKRIARDPADQGGESVLILKGPQG----------RINRAVWGPLNRTII  162 (326)
Q Consensus        98 ---~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~  162 (326)
                         ..... .++.+.+...... ..++       .      ..|..+........          .+..-....++ .++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d-------~------~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~  177 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALD-------P------KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVY  177 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEE-------T------TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEE
T ss_pred             cccccCceEecCEEEEEeccCcEEEEe-------c------CCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEE
Confidence               11111 2344444332211 1111       0      11222222222111          11111122234 666


Q ss_pred             EeeCCCc-EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461          163 SAGEDAI-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (326)
Q Consensus       163 s~~~d~~-i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (326)
                      .++.++. +.+ |+.+++..-...   .  .....+ ...++..++.++.++.|..||+++++.+-
T Consensus       178 ~~~~~g~~~~~-d~~tg~~~w~~~---~--~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  178 VSSGDGRVVAV-DLATGEKLWSKP---I--SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EECCTSSEEEE-ETTTTEEEEEEC---S--S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEcCCCeEEEE-ECCCCCEEEEec---C--CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            6666775 555 999987442111   1  112221 34667788888899999999999998753

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.06  E-value=0.0054  Score=53.63  Aligned_cols=189  Identities=13%  Similarity=0.138  Sum_probs=97.2

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEE-EEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCccee-
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV-   99 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-   99 (326)
                      +..++.++.++.+.-+|.++|+.+=..+... .+.+ ...  .+..++.+..++.+..+|.++|+.+.......+.... 
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            4456667788899999999998754443322 2221 112  1345667788899999999999988776543221100 


Q ss_pred             ---e-eecCCeEEEEEcCccc-e--eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec--CCcEEEEeeCCCcE
Q 020461          100 ---D-FAVGDKLAVITTDPFM-E--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIV  170 (326)
Q Consensus       100 ---~-~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~d~~i  170 (326)
                         . ...++.+.+...+..+ .  .......|........ .....       .....+.-+|  .+..++.++.++.+
T Consensus       197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~-~~~~~-------~~~~~~~~sP~v~~~~vy~~~~~g~l  268 (394)
T PRK11138        197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT-GATEI-------DRLVDVDTTPVVVGGVVYALAYNGNL  268 (394)
T ss_pred             CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC-Cccch-------hcccccCCCcEEECCEEEEEEcCCeE
Confidence               0 0112222222221110 0  0000011111000000 00000       0000011112  24566677789999


Q ss_pred             EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (326)
Q Consensus       171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (326)
                      ..+|..+|+.+-....  +.   ...+.  ..+..++.++.+|.+...|.++++.+-+
T Consensus       269 ~ald~~tG~~~W~~~~--~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        269 VALDLRSGQIVWKREY--GS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             EEEECCCCCEEEeecC--CC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            9999998876433211  11   11122  2455788888999999999999876544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.00  E-value=0.0053  Score=49.82  Aligned_cols=158  Identities=18%  Similarity=0.148  Sum_probs=86.9

Q ss_pred             EEEe-cCCcEEEEeeCCCcEEEEECCCCccccccccc-cC-cceeeEEEEEcCCCCeEEEEeCC--------CeEEEeec
Q 020461          152 AVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TG-HKKTITSLAKAADGSHFLTGSLD--------KSAKLWDA  220 (326)
Q Consensus       152 ~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~-h~~~v~~v~~s~~~~~l~s~s~d--------g~i~iwd~  220 (326)
                      +++. ++ ..++.+...+ +.++|..+++........ .. .......++++++|...++....        |.|..++.
T Consensus        45 ~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~  122 (246)
T PF08450_consen   45 MAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP  122 (246)
T ss_dssp             EEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred             EEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence            3444 44 3444454444 556698877543322211 12 34678899999999977776643        55777777


Q ss_pred             CCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461          221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (326)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~  300 (326)
                      . ++.......-...+.++++|+++.++++-..... +..++.......+     ...+.+..+..-.+..-.+++.++|
T Consensus       123 ~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~-i~~~~~~~~~~~~-----~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  123 D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR-IWRFDLDADGGEL-----SNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             T-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE-EEEEEEETTTCCE-----EEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             C-CeEEEEecCcccccceEECCcchheeecccccce-eEEEeccccccce-----eeeeeEEEcCCCCcCCCcceEcCCC
Confidence            7 4544434444568999999999988765433322 2222221100000     0011121222222346779999999


Q ss_pred             ceEEeecCCCcEEEeecC
Q 020461          301 KSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       301 ~~lat~s~Dg~i~l~~~~  318 (326)
                      ...++.-..+.|.+++-+
T Consensus       196 ~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             -EEEEEETTTEEEEEETT
T ss_pred             CEEEEEcCCCEEEEECCC
Confidence            988877777777775433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00079  Score=56.05  Aligned_cols=155  Identities=12%  Similarity=0.088  Sum_probs=92.9

Q ss_pred             CeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceecee
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      .....+.+|...|..++|+|..+ ++..++.+.+|++.|+++...+..+..                             
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-----------------------------  234 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-----------------------------  234 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-----------------------------
Confidence            33334567788899999999877 788899999999999987654332211                             


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCcccc-ccccccCcceeeEEEE-
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLA-  198 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~-  198 (326)
                                             + ..+.+++|.-+.. +|+.|-.+|.|.+||++..+... ++.. .--..+|..++ 
T Consensus       235 -----------------------~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a-~~t~~pv~~i~~  289 (463)
T KOG1645|consen  235 -----------------------Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA-NVTINPVHKIAP  289 (463)
T ss_pred             -----------------------c-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh-hhccCcceeecc
Confidence                                   1 3456667766654 67778889999999997644321 1110 01123344443 


Q ss_pred             -----EcCCCCeEEEEeCCCeEEEeecCC----cceEEEEeeccceEEEEeCCCCCeeEEecCC
Q 020461          199 -----KAADGSHFLTGSLDKSAKLWDART----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       199 -----~s~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  253 (326)
                           .++-|.+|+..+.+  +.+|++.-    .-++..+..+...-.++..+..++++++...
T Consensus       290 ~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  290 VQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             cCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecC
Confidence                 23334455555544  56776542    1222223333444455556666888877654

>smart00320 WD40 WD40 repeats

Probab=97.99  E-value=1.8e-05  Score=43.03  Aligned_cols=38  Identities=42%  Similarity=0.601  Sum_probs=33.6

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd   80 (326)
                      +.+..+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778899999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.96  E-value=0.0047  Score=55.60  Aligned_cols=113  Identities=17%  Similarity=0.164  Sum_probs=71.3

Q ss_pred             CCCCeEEEEeCCCeEEEeecCC-----cceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce--eeeEee
Q 020461          201 ADGSHFLTGSLDKSAKLWDART-----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK--FEAKFF  273 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~  273 (326)
                      ++|++...  .++.|.+.|.++     .+.+..+..+..+..+.++|++..++++++.+.. +...|.....  +.-++ 
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~-  361 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKI-  361 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccC-
Confidence            45655544  256799999998     5677777778889999999999999998775543 2233332211  00000 


Q ss_pred             cccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          274 DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +. ....++...-=.+ -...+|.++|....|-..|..|.-|+++.
T Consensus       362 ~~-~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KP-RDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             Cc-cceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            00 0000111110012 24688999999888889999999999886

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.00053  Score=62.47  Aligned_cols=110  Identities=13%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             eeEEEEccCCCEEEeec----CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461           13 LTYLKYNKDGDLLFSCA----KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~----~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      .+-.+|+|.-.+++.++    ..|+|.|| +++|+.-... ...=.+.+++|+|..-.|+.|-.-|.+.+|..++.+.- 
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-   94 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-   94 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceee-
Confidence            35678999999988776    46889998 4677643211 11112456999998777888888888889876543321 


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  168 (326)
                                                                         .+...|..+|.-+.|||+|..++|+..-|
T Consensus        95 ---------------------------------------------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g  123 (1416)
T KOG3617|consen   95 ---------------------------------------------------TVVETHPAPIQGLDWSHDGTVLMTLDNPG  123 (1416)
T ss_pred             ---------------------------------------------------eeccCCCCCceeEEecCCCCeEEEcCCCc
Confidence                                                               11234667788889999999999999999


Q ss_pred             cEEEEECC
Q 020461          169 IVRIWDTE  176 (326)
Q Consensus       169 ~i~~wd~~  176 (326)
                      .+.+|...
T Consensus       124 ~v~lwr~d  131 (1416)
T KOG3617|consen  124 SVHLWRYD  131 (1416)
T ss_pred             eeEEEEee
Confidence            99999754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.94  E-value=0.0038  Score=59.25  Aligned_cols=235  Identities=14%  Similarity=0.080  Sum_probs=125.5

Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCC
Q 020461           53 GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA  132 (326)
Q Consensus        53 ~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (326)
                      ..|.++.|..+.+-++.+..+|.|.+-|.++......-..+..+.+.+|++++..++..+..-..+.....+..+...+ 
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~-  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP-  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc-
Confidence            5788999988888888899999999999888766555556777788889888877665443211111110000000000 


Q ss_pred             CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC----------cEEEEECCCCccccccccccCcceeeEEEEEcCC
Q 020461          133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA----------IVRIWDTETGKLLKESDKETGHKKTITSLAKAAD  202 (326)
Q Consensus       133 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~----------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~  202 (326)
                            +           ...-.+.+ .+++.|+..          ..+.-+....+..   .....-...=+++.|-.|
T Consensus       148 ------L-----------~~d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~---~~~~~~~~~~~~IsWRgD  206 (1265)
T KOG1920|consen  148 ------L-----------DADDERKS-KFVNVGWGRKETQFRGSEGRQAARQKIEKEKA---LEQIEQDDHKTSISWRGD  206 (1265)
T ss_pred             ------c-----------cccccccc-ccceecccccceeeecchhhhccccccccccc---ccchhhccCCceEEEccC
Confidence                  0           00000001 122222221          1111111000000   000001122357899999


Q ss_pred             CCeEEEEe----CC-CeEEEeecCCcceEEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461          203 GSHFLTGS----LD-KSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI  276 (326)
Q Consensus       203 ~~~l~s~s----~d-g~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (326)
                      |.++++..    .+ ..|++||.. +.+-..- .....-.+++|-|.|..+++-......           -.+.+|..+
T Consensus       207 g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd-----------~~IvffErN  274 (1265)
T KOG1920|consen  207 GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD-----------SDIVFFERN  274 (1265)
T ss_pred             CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCC-----------CcEEEEecC
Confidence            99998843    23 789999987 4332221 123345688899977665543221110           023444433


Q ss_pred             c---eeeeccccccCcceeEEEECCCCceEEe---ecCCCcEEEeecCCCc
Q 020461          277 L---QEEIGGVKGHFGPINALAFNPDGKSFSS---GGEDGYVRLHHFDPDY  321 (326)
Q Consensus       277 ~---~~~~~~~~~h~~~v~~v~~s~d~~~lat---~s~Dg~i~l~~~~~~~  321 (326)
                      .   ++-.-.......+|..++|+.++..||.   ......|++|-+-+.-
T Consensus       275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            1   1111111122334899999999999988   6666679999887653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.92  E-value=0.0025  Score=55.92  Aligned_cols=140  Identities=15%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-----------ceE
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-----------ELI  226 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-----------~~~  226 (326)
                      |..|+..+. +.|.+||..+++.++.+..     ..|..+.|+++|.+++-.+.+ ++.+.+....           +.+
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f  189 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF  189 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhce
Confidence            444555544 4799999999988877642     248999999999998888765 6777765433           011


Q ss_pred             EEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461          227 KTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS  305 (326)
Q Consensus       227 ~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat  305 (326)
                      ..+.. ...+.+.+|..+  .++.+..          .     .++++-.  + ..+.+..-..++.=+.+.|....+..
T Consensus       190 ~~~~E~~~~IkSg~W~~d--~fiYtT~----------~-----~lkYl~~--G-e~~~i~~ld~~~yllgy~~~~~~ly~  249 (443)
T PF04053_consen  190 ELIHEISERIKSGCWVED--CFIYTTS----------N-----HLKYLVN--G-ETGIIAHLDKPLYLLGYLPKENRLYL  249 (443)
T ss_dssp             EEEEEE-S--SEEEEETT--EEEEE-T----------T-----EEEEEET--T-EEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred             EEEEEecceeEEEEEEcC--EEEEEcC----------C-----eEEEEEc--C-CcceEEEcCCceEEEEEEccCCEEEE
Confidence            22211 345666666543  2221111          1     1222111  1 11112222345666777776777777


Q ss_pred             ecCCCcEEEeecCCCceee
Q 020461          306 GGEDGYVRLHHFDPDYFNI  324 (326)
Q Consensus       306 ~s~Dg~i~l~~~~~~~~~~  324 (326)
                      ...|+.|..+.+++..+..
T Consensus       250 ~Dr~~~v~~~~ld~~~~~f  268 (443)
T PF04053_consen  250 IDRDGNVISYELDLSELEF  268 (443)
T ss_dssp             E-TT--EEEEE--HHHHHH
T ss_pred             EECCCCEEEEEECHHHHHH
Confidence            8899999988888766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.91  E-value=0.0086  Score=49.19  Aligned_cols=236  Identities=13%  Similarity=0.061  Sum_probs=128.1

Q ss_pred             eEEEEccCCC-EEEeecCCC-CeEEEecCCCCeeeeccCcccceE--EEEEcCCCCeEEEEe-----CCCcEEEEEcc-C
Q 020461           14 TYLKYNKDGD-LLFSCAKDH-TPTVWFADNGERLGTYRGHNGAVW--CCDVSRDSMTLITGS-----ADQTAKLWNVE-T   83 (326)
Q Consensus        14 ~~~~~s~~~~-~l~s~~~d~-~v~iw~~~~~~~~~~~~~h~~~V~--~~~~~~~~~~l~s~~-----~d~~i~~wd~~-~   83 (326)
                      ..++.+|+.. .++.+---| ...+||..+++....+....+.-+  --.||+||++|++.=     ..|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3456678444 444444433 345789999988776654444332  146999999998854     45889999998 3


Q ss_pred             CcEEEEEecC-CCcceeeeecCCeEEEEEcCccc-eece-e--eeeeeeccC---CCCCCCceEEE--e--ccCccceeE
Q 020461           84 GAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFM-ELNS-A--IHVKRIARD---PADQGGESVLI--L--KGPQGRINR  151 (326)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~~~~~~---~~~~~~~~~~~--~--~~~~~~i~~  151 (326)
                      -+.+-.+... -....+.+.++...+++...... ..+. +  +++..+...   ....+++.+..  +  ..|+..|..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            3333333221 12233445566643333332211 1111 1  111111110   00123333333  3  346778999


Q ss_pred             EEEecCCcEEEEeeCCCc-------EEEEECCCCcccccccc----ccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEee
Q 020461          152 AVWGPLNRTIISAGEDAI-------VRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWD  219 (326)
Q Consensus       152 ~~~~~~~~~l~s~~~d~~-------i~~wd~~~~~~~~~~~~----~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd  219 (326)
                      +++.++|..++..-..|.       |-+++...  .+..+..    ...-...+=+|++++++..+++.| .-+.+.+||
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            999998876655443332       33443322  1111110    012235678999999998775555 677899999


Q ss_pred             cCCcceEEEEeeccceEEEEeCCCCCeeEEecCCC
Q 020461          220 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      ..+++.+..... ..+..++-.+.+  ++++.|.+
T Consensus       246 ~~tg~~~~~~~l-~D~cGva~~~~~--f~~ssG~G  277 (305)
T PF07433_consen  246 AATGRLLGSVPL-PDACGVAPTDDG--FLVSSGQG  277 (305)
T ss_pred             CCCCCEeecccc-CceeeeeecCCc--eEEeCCCc
Confidence            999998876543 244555555444  55555544

>smart00320 WD40 WD40 repeats

Probab=97.89  E-value=3.1e-05  Score=41.98  Aligned_cols=33  Identities=45%  Similarity=0.952  Sum_probs=29.7

Q ss_pred             ccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      +..|...|+++.|+|++..+++++.|+.+++|+
T Consensus         8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            346778999999999999999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.0028  Score=57.50  Aligned_cols=96  Identities=13%  Similarity=0.212  Sum_probs=63.8

Q ss_pred             eeeecCCceeEEEEcc-------------CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC-----CCe
Q 020461            5 LMKGHERPLTYLKYNK-------------DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-----SMT   66 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~-------------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-----~~~   66 (326)
                      .|..|.+.+.-..+.-             +|.+++|||.||+|.|-.+-+.+....+. ...++.+++++|+     .+.
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence            3445665555444443             49999999999999999887777655443 4668999999997     568


Q ss_pred             EEEEeCCCcEEEEEcc---CCcEEEEEecCCCcceeeee
Q 020461           67 LITGSADQTAKLWNVE---TGAQLFTFNFDSPARSVDFA  102 (326)
Q Consensus        67 l~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~  102 (326)
                      +++||.-| +-++.-+   ....+..-..++++.++.|.
T Consensus       132 fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~  169 (846)
T KOG2066|consen  132 FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR  169 (846)
T ss_pred             eeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence            89999888 6665421   11222222345666666554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.80  E-value=0.021  Score=50.07  Aligned_cols=204  Identities=12%  Similarity=0.084  Sum_probs=101.5

Q ss_pred             EEEccCCCEEEeecCC----------C-CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461           16 LKYNKDGDLLFSCAKD----------H-TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus        16 ~~~s~~~~~l~s~~~d----------~-~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      ++.+|.|-.+|..-.+          . .|+||+. .|+.+..+.=-.+.|-++.|..+ +.|+.-..||+++++|+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence            3445655555544333          1 4888874 56666655433378999999874 55667789999999998643


Q ss_pred             cEEEEEecC---CCcceee----eecCCeEEEEEcCccc-eeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           85 AQLFTFNFD---SPARSVD----FAVGDKLAVITTDPFM-ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        85 ~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      . ...+..+   ..+....    ...++.++++..+..+ .+............+ .... .......+.....-..++.
T Consensus       112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~-~~p~-~~~~~~~~~~~~~i~~l~~  188 (410)
T PF04841_consen  112 F-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLP-EIPG-LWTKFHWWPSWTVIPLLSS  188 (410)
T ss_pred             e-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccc-cCCC-cccccccccccccceEeec
Confidence            3 1111110   1111110    1111233333322211 111100000000000 0000 0000001111000123444


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (326)
                      +....+....++.+.+.+-...+.   +    ...+++..++.||+++++|.-..+|.+.+....-.+...++..
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             CcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            555555556666777555332211   1    1235799999999999999999999999987665566555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.79  E-value=0.029  Score=53.70  Aligned_cols=219  Identities=12%  Similarity=0.066  Sum_probs=122.6

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      +.|.++.|-.+.+-++.+..+|.|.+-|.++....  +.| -...|.+.+|+||.+.++-...++++-+= ..+-..+..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~m-T~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFM-TKDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEE-eccccchhc
Confidence            57899999999998888999999999887766542  223 24579999999999999888887776442 222211111


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-----cCccceeEEEEecCCcEEEE-
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-----GPQGRINRAVWGPLNRTIIS-  163 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~s-  163 (326)
                      ...+     .+....++.+-++-+   ...+.++...... .   ..+.....+     .-.+.=+++.|-.+|+++++ 
T Consensus       146 ~~L~-----~d~~~~sk~v~VGwG---rkeTqfrgs~gr~-~---~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs  213 (1265)
T KOG1920|consen  146 KPLD-----ADDERKSKFVNVGWG---RKETQFRGSEGRQ-A---ARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVS  213 (1265)
T ss_pred             cccc-----cccccccccceeccc---ccceeeecchhhh-c---ccccccccccccchhhccCCceEEEccCCcEEEEE
Confidence            0000     000011111111100   0000000000000 0   000000000     01122345788889998887 


Q ss_pred             ----eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---CCCeEEEeecCCcceEEE----Eee-
Q 020461          164 ----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKT----YVT-  231 (326)
Q Consensus       164 ----~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~----~~~-  231 (326)
                          ..+...|++||.+ |.+-..-.+   ....-.+++|-|.|..+++-.   +|+.|.++... |..-.+    ++. 
T Consensus       214 ~~~~~~~~RkirV~drE-g~Lns~se~---~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  214 FVESETGTRKIRVYDRE-GALNSTSEP---VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLD  288 (1265)
T ss_pred             EEeccCCceeEEEeccc-chhhcccCc---ccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCccc
Confidence                3333789999987 544332221   123345889999999888754   46678888753 322222    222 


Q ss_pred             ccceEEEEeCCCCCeeEE
Q 020461          232 ERPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       232 ~~~~~~~~~s~~~~~~~~  249 (326)
                      +..+..++|+.+++.+++
T Consensus       289 e~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  289 EKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             ccchheeeecCCCCceee
Confidence            234889999999888776

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00016  Score=63.46  Aligned_cols=90  Identities=20%  Similarity=0.192  Sum_probs=75.1

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceE-EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      ..+..+-|+|.-.++|.+..+|.+.+..++ -.++-++.-|...|. +++|.|||+.|+.|=.||+|++.|++++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            457889999999999999999999999887 667778887888887 999999999999999999999999999988776


Q ss_pred             --EecCCCcceeee
Q 020461           90 --FNFDSPARSVDF  101 (326)
Q Consensus        90 --~~~~~~~~~~~~  101 (326)
                        +....++.+..|
T Consensus       100 ~~~s~e~~is~~~w  113 (665)
T KOG4640|consen  100 FLFSVETDISKGIW  113 (665)
T ss_pred             cccccccchheeec
Confidence              333444444444

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.00029  Score=62.62  Aligned_cols=127  Identities=16%  Similarity=0.180  Sum_probs=89.9

Q ss_pred             ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (326)
                      ...+.--+++..+++++.|+.-|.+.++....++....  ...+....+.....+++..++|.|+..|.|-++-++....
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence            34455566777889999999999999999887765432  2223334566667888888899999999999887664221


Q ss_pred             EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461          226 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS  305 (326)
Q Consensus       226 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat  305 (326)
                      -.                  ..+++.                               .-+.|...|+++.|++|++.|.+
T Consensus       111 ~~------------------~~~~t~-------------------------------~d~~~~~rVTal~Ws~~~~k~ys  141 (726)
T KOG3621|consen  111 RD------------------LDYVTP-------------------------------CDKSHKCRVTALEWSKNGMKLYS  141 (726)
T ss_pred             Cc------------------ceeecc-------------------------------ccccCCceEEEEEecccccEEee
Confidence            10                  011110                               01226778999999999999999


Q ss_pred             ecCCCcEEEeecCC-Ccee
Q 020461          306 GGEDGYVRLHHFDP-DYFN  323 (326)
Q Consensus       306 ~s~Dg~i~l~~~~~-~~~~  323 (326)
                      |...|+|.+-.++. ..|+
T Consensus       142 GD~~Gkv~~~~L~s~~~~~  160 (726)
T KOG3621|consen  142 GDSQGKVVLTELDSRQAFL  160 (726)
T ss_pred             cCCCceEEEEEechhhhhc
Confidence            99999999988876 4443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.77  E-value=3.6e-05  Score=67.52  Aligned_cols=201  Identities=14%  Similarity=0.179  Sum_probs=120.0

Q ss_pred             ceeEEEEccCC--CEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcC-CCCeEEEEe----CCCcEEEEEcc
Q 020461           12 PLTYLKYNKDG--DLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSR-DSMTLITGS----ADQTAKLWNVE   82 (326)
Q Consensus        12 ~i~~~~~s~~~--~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~-~~~~l~s~~----~d~~i~~wd~~   82 (326)
                      .+.|++...+.  .+++.|..+|.|-+-......-  .....+|..+.++++|++ |.+.||.|-    .|..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            45677666543  5788999999999876544322  223467888999999987 445565543    35678999987


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ++-.       .|.....|.        +                                +.....++++|..+.+.++
T Consensus       138 s~lt-------vPke~~~fs--------~--------------------------------~~l~gqns~cwlrd~klvl  170 (783)
T KOG1008|consen  138 SLLT-------VPKESPLFS--------S--------------------------------STLDGQNSVCWLRDTKLVL  170 (783)
T ss_pred             cccC-------CCccccccc--------c--------------------------------ccccCccccccccCcchhh
Confidence            6521       000000000        0                                0011122556666677888


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEee-cCCcc-eEEEEeec-----cc
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWD-ARTLE-LIKTYVTE-----RP  234 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd-~~~~~-~~~~~~~~-----~~  234 (326)
                      +|.....++++|++.......    .-....+..+..+| .+.++++-+ ||.|-+|| .+..+ +++.+...     ..
T Consensus       171 aGm~sr~~~ifdlRqs~~~~~----svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~  245 (783)
T KOG1008|consen  171 AGMTSRSVHIFDLRQSLDSVS----SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ  245 (783)
T ss_pred             cccccchhhhhhhhhhhhhhh----hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence            999999999999984321111    11233466677778 667777666 99999999 44322 22222211     23


Q ss_pred             eEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (326)
Q Consensus       235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~  264 (326)
                      ...+++.|.-..+.+.-..+...+..+|.+
T Consensus       246 l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  246 LFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            677888887666555555555556555544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.76  E-value=0.002  Score=58.22  Aligned_cols=152  Identities=10%  Similarity=0.065  Sum_probs=94.7

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC------------CCeEEEEeCCCcEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD------------SMTLITGSADQTAK   77 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~------------~~~l~s~~~d~~i~   77 (326)
                      ...-.++.|+|.|- ||-|+. ..|.+-|..+-+.+..+.-|+..|+.+.|.|.            .-.++++...|.|.
T Consensus        15 ~sN~~A~Dw~~~GL-iAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   15 RSNRNAADWSPSGL-IAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccccCccce-EEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            33456789999775 555554 37778898888999999999999999999762            12567777889999


Q ss_pred             EEEccCCcEEEEEec-CCCcceeeeec---CC--eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           78 LWNVETGAQLFTFNF-DSPARSVDFAV---GD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~-~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      +||...+..+..++. ..++..+.|.+   ..  .+++..+..++.+++.            .+|+.............+
T Consensus        93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt------------dtG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT------------DTGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc------------cCCceeeccccCCcceee
Confidence            999988776666654 34455555543   22  2223222222222111            123333333333445566


Q ss_pred             EEEecCC-cEEEEeeCCCcEEEEEC
Q 020461          152 AVWGPLN-RTIISAGEDAIVRIWDT  175 (326)
Q Consensus       152 ~~~~~~~-~~l~s~~~d~~i~~wd~  175 (326)
                      ..++|.. +.+...+..|.+.+-+.
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEec
Confidence            7788854 46666666777766654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00049  Score=61.29  Aligned_cols=123  Identities=14%  Similarity=0.147  Sum_probs=90.7

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe-eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      |...+..-+++..+++++-|++-|.+++|+...++. .....+-.+.+..+..+++..++|.|+..|.|.++-++.+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            445567778889999999999999999999877754 3344445556667778888888888889998888876542210


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                                       +.+.+.                    +         .-+.|...|+++.|++++..+++|...
T Consensus       112 -----------------~~~~~t--------------------~---------~d~~~~~rVTal~Ws~~~~k~ysGD~~  145 (726)
T KOG3621|consen  112 -----------------DLDYVT--------------------P---------CDKSHKCRVTALEWSKNGMKLYSGDSQ  145 (726)
T ss_pred             -----------------cceeec--------------------c---------ccccCCceEEEEEecccccEEeecCCC
Confidence                             000000                    0         012267789999999999999999999


Q ss_pred             CcEEEEECCC
Q 020461          168 AIVRIWDTET  177 (326)
Q Consensus       168 ~~i~~wd~~~  177 (326)
                      |.|.+-.+.+
T Consensus       146 Gkv~~~~L~s  155 (726)
T KOG3621|consen  146 GKVVLTELDS  155 (726)
T ss_pred             ceEEEEEech
Confidence            9999888876

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00022  Score=62.59  Aligned_cols=92  Identities=20%  Similarity=0.195  Sum_probs=72.6

Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeE-EEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (326)
                      ..+..+.|+|.-..+|++..+|.|.+..++..+ +-++.   -|...++ +++|.|||+.|+.|-.||+|++.|..++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-lwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-LWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccce-eEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            456778899999999999999998888777333 33332   2455566 999999999999999999999999999998


Q ss_pred             EEE--EeeccceEEEEeCC
Q 020461          226 IKT--YVTERPVNAVTMSP  242 (326)
Q Consensus       226 ~~~--~~~~~~~~~~~~s~  242 (326)
                      +..  +..+.++..+-|++
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            888  44556677776653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00012  Score=66.42  Aligned_cols=107  Identities=21%  Similarity=0.225  Sum_probs=76.5

Q ss_pred             EEEcCCCCeEEEEeC----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEe
Q 020461          197 LAKAADGSHFLTGSL----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF  272 (326)
Q Consensus       197 v~~s~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (326)
                      ..|+|..++++.++.    .|.+.|| ..+|++-+...-+..+.++||+|.-  ++++.|+...            .+.+
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~--~vLa~gwe~g------------~~~v   85 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE--FVLAQGWEMG------------VSDV   85 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH--HHHhhccccc------------eeEE
Confidence            356777777777664    5778888 4567765555444556789999953  4444444433            2344


Q ss_pred             ecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          273 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      |.....+.......|..+|.-+.|||+|..|.|+..=|.+.+|++|
T Consensus        86 ~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   86 QKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5554444444556799999999999999999999999999999998

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=7.6e-05  Score=68.03  Aligned_cols=146  Identities=18%  Similarity=0.253  Sum_probs=96.8

Q ss_pred             eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeee
Q 020461           44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (326)
Q Consensus        44 ~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (326)
                      ..++|+.|+..-+|++|+.+.+.|+.|+..|-|+++++.+|.....                                  
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---------------------------------- 1138 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---------------------------------- 1138 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc----------------------------------
Confidence            3456788888899999999999999999999999999987753211                                  


Q ss_pred             eeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC-CC-cEEEEECCC-CccccccccccCcceeeEEEEEc
Q 020461          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DA-IVRIWDTET-GKLLKESDKETGHKKTITSLAKA  200 (326)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~-~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s  200 (326)
                                        ..+|++.|+.+.=+.+|..+++.+. .. ...+|+..+ +...+.+.       .-.++.|+
T Consensus      1139 ------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~-------ed~~vkFs 1193 (1516)
T KOG1832|consen 1139 ------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD-------EDKAVKFS 1193 (1516)
T ss_pred             ------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-------ccceeehh
Confidence                              2345555555554556665554333 33 577999753 22222221       23466676


Q ss_pred             CCCCeEEEEeCCCeEEEeecCCcceEEEEeec-----cceEEEEeCCCCCeeE
Q 020461          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVV  248 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~  248 (326)
                      .....-+.|+.-....+||++++..+.++..+     ..-++..|+|....++
T Consensus      1194 n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1194 NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            65445555665567899999999887775422     2357788999866544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.61  E-value=0.04  Score=48.20  Aligned_cols=195  Identities=14%  Similarity=0.138  Sum_probs=99.1

Q ss_pred             CCCEEEeecCCCCeEEEecCCCCeeeec--cCccc--------ceE-EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           21 DGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNG--------AVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~--~~h~~--------~V~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      .+..++.++.++.+.-+|.++|+.+=..  ....+        .+. .+..  ++..++.++.++.+..+|.++|+.+..
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            3567777888888888898888764322  22110        111 1111  345677788899999999999998776


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccc-ee--ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFM-EL--NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      ........+.-...++.+.+...+..+ .+  ......|+....      .......+...++    .  .+..++.++.
T Consensus       146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~~~~~~~sP~----v--~~~~v~~~~~  213 (394)
T PRK11138        146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLD------VPSLTLRGESAPA----T--AFGGAIVGGD  213 (394)
T ss_pred             ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCC------CCcccccCCCCCE----E--ECCEEEEEcC
Confidence            654433221111223333333222110 00  011111211110      0000001111111    1  1234666778


Q ss_pred             CCcEEEEECCCCccccccccccC---cc-eeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          167 DAIVRIWDTETGKLLKESDKETG---HK-KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~---h~-~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      ++.+..+|..+|+..-.......   +. .....+..+|  .+..++.++.+|.+.-.|.++++.+-+.
T Consensus       214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~  282 (394)
T PRK11138        214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR  282 (394)
T ss_pred             CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence            89999999988876433211100   00 0011111122  2456777888999999999999876554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.56  E-value=0.013  Score=51.31  Aligned_cols=185  Identities=14%  Similarity=0.126  Sum_probs=104.1

Q ss_pred             CceeEEEEccCCCEEEeec---CC-CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEcc--C
Q 020461           11 RPLTYLKYNKDGDLLFSCA---KD-HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVE--T   83 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~---~d-~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~--~   83 (326)
                      ..+..-+|+|+++.++--+   .. ..+.++++++++...... ..+.-...+|+|||+. +++...|+...+|-++  +
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            3445568889888765432   22 458888988876543332 2333345689999986 4666678887777443  2


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      .... .+.                                                    ...+.-..-.|+|+|++++.
T Consensus       272 ~~~~-~Lt----------------------------------------------------~~~gi~~~Ps~spdG~~ivf  298 (425)
T COG0823         272 KNLP-RLT----------------------------------------------------NGFGINTSPSWSPDGSKIVF  298 (425)
T ss_pred             Ccce-ecc----------------------------------------------------cCCccccCccCCCCCCEEEE
Confidence            2210 000                                                    00000112358899987765


Q ss_pred             ee-CCCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-Ce--EEEeecCCcceEEEEeeccceEE
Q 020461          164 AG-EDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELIKTYVTERPVNA  237 (326)
Q Consensus       164 ~~-~d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~~  237 (326)
                      .+ ..|.  |.+.+.+.+... .+....   ..-..-.++|||++++-.+.. |.  |.+.|+.++..++.+........
T Consensus       299 ~Sdr~G~p~I~~~~~~g~~~~-riT~~~---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~  374 (425)
T COG0823         299 TSDRGGRPQIYLYDLEGSQVT-RLTFSG---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNES  374 (425)
T ss_pred             EeCCCCCcceEEECCCCCcee-EeeccC---CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCC
Confidence            44 3444  555566544432 222111   111256789999998877643 44  66667766654454444444445


Q ss_pred             EEeCCCCCeeEEecCC
Q 020461          238 VTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~  253 (326)
                      -.+.+++..++...+.
T Consensus       375 ps~~~ng~~i~~~s~~  390 (425)
T COG0823         375 PSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCcCCCCceEEEeccC
Confidence            6677777777665443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.43  E-value=0.038  Score=46.84  Aligned_cols=138  Identities=15%  Similarity=0.263  Sum_probs=79.9

Q ss_pred             CcEEEEECCCC----ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc-eEEEEeeccceEEEEeCC
Q 020461          168 AIVRIWDTETG----KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       168 ~~i~~wd~~~~----~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~s~  242 (326)
                      |+|.++++...    ..+..+ ......++|++++.- ++ +|+.+. .+.|.+|+++..+ ....-....+....++..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i-~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLI-HSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEE-EEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEE-EEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            78888888763    122211 112345778888766 33 444444 4789999998877 544444434445555555


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .++.++++....+..+..++.....+          ..+.. .....++.++.|-+|+..++.+..+|.+.+++++++
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l----------~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKL----------ILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-E----------EEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEE----------EEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence            56677776555554444333211111          11111 112346888999867779999999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.39  E-value=0.097  Score=47.20  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeeccCccc------ce-E-EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------AV-W-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~------~V-~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~   93 (326)
                      +..++.++.++.+.-.|.++|+.+=.++....      .+ . .+... ++..++.++.++.|.-+|.++|+.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45566777889999889998876543332211      11 1 11111 2257778889999999999999998877654


Q ss_pred             C
Q 020461           94 S   94 (326)
Q Consensus        94 ~   94 (326)
                      .
T Consensus       140 ~  140 (488)
T cd00216         140 D  140 (488)
T ss_pred             C
Confidence            3

The alignment model contains an 8-bladed beta-propeller.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.35  E-value=0.011  Score=55.22  Aligned_cols=145  Identities=14%  Similarity=0.166  Sum_probs=87.9

Q ss_pred             CCEEE-eecCCCCeEEEecCCCCeeeeccCcccc-eEEEEEcCC-------CCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           22 GDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRD-------SMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        22 ~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~-------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      .++|+ .......++-.|++.|+.+.+++.|... |..+  .|+       ....+.|-.+..+..||++-........ 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-  569 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-  569 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec-
Confidence            34433 3345577788899999999999887643 5544  332       2345567777788888876422100000 


Q ss_pred             CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEE
Q 020461           93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI  172 (326)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~  172 (326)
                      .    ...+.                                          ......|++-+. ..+||.|+.+|.||+
T Consensus       570 ~----~k~Y~------------------------------------------~~~~Fs~~aTt~-~G~iavgs~~G~IRL  602 (794)
T PF08553_consen  570 Q----SKQYS------------------------------------------SKNNFSCFATTE-DGYIAVGSNKGDIRL  602 (794)
T ss_pred             c----ccccc------------------------------------------cCCCceEEEecC-CceEEEEeCCCcEEe
Confidence            0    00000                                          011122333333 347899999999999


Q ss_pred             EECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      ||. .++..++..  .+-..+|+.|+.+.||.++++.+. ..|.+++.
T Consensus       603 yd~-~g~~AKT~l--p~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  603 YDR-LGKRAKTAL--PGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             ecc-cchhhhhcC--CCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            995 343333332  355689999999999999888775 45666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.33  E-value=0.058  Score=48.85  Aligned_cols=147  Identities=16%  Similarity=0.139  Sum_probs=77.0

Q ss_pred             EcCCCCeEEEEe-CCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcC-ccceeceeeeeeeeccCCCCCCCc
Q 020461           60 VSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGE  137 (326)
Q Consensus        60 ~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  137 (326)
                      +++||+.+...+ ..+.+.+.|.++.+....+..+.....+.+.++++.+.+... .....    .+..+...  .  ..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~----tl~em~a~--e--~d  271 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGV----TLAEMMAA--E--RD  271 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCc----ceeeeccc--c--Cc
Confidence            455666553333 345566677777666555554444445566666655554431 10000    00000000  0  00


Q ss_pred             eEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCC----C-ccccccccccCcceeeEEEEEcCCCCeEEEEe-C
Q 020461          138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET----G-KLLKESDKETGHKKTITSLAKAADGSHFLTGS-L  211 (326)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~----~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~  211 (326)
                      .+..+.-  ..  ...+.++|++...  .++.|.++|.++    + +....+    .-......++++|||+++++++ .
T Consensus       272 ~~vvfni--~~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI----PVGKsPHGV~vSPDGkylyVankl  341 (635)
T PRK02888        272 WVVVFNI--AR--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV----PVPKNPHGVNTSPDGKYFIANGKL  341 (635)
T ss_pred             eEEEEch--HH--HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE----ECCCCccceEECCCCCEEEEeCCC
Confidence            0000000  00  0023346665554  367899999887    2 222222    2235567899999999987665 5


Q ss_pred             CCeEEEeecCCcc
Q 020461          212 DKSAKLWDARTLE  224 (326)
Q Consensus       212 dg~i~iwd~~~~~  224 (326)
                      +.++.+.|+++.+
T Consensus       342 S~tVSVIDv~k~k  354 (635)
T PRK02888        342 SPTVTVIDVRKLD  354 (635)
T ss_pred             CCcEEEEEChhhh
Confidence            8999999998755

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.04  Score=50.81  Aligned_cols=145  Identities=16%  Similarity=0.210  Sum_probs=79.8

Q ss_pred             EEEEeeCCC-----cEEEEECCCCc------cc---cccc-cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC---
Q 020461          160 TIISAGEDA-----IVRIWDTETGK------LL---KESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR---  221 (326)
Q Consensus       160 ~l~s~~~d~-----~i~~wd~~~~~------~~---~~~~-~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~---  221 (326)
                      +|++-+.|+     .+++||++.-.      ++   +.+. ...-...++.+++.+.+-+.+|.|-.||.|..+.-.   
T Consensus        79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R  158 (933)
T KOG2114|consen   79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR  158 (933)
T ss_pred             EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence            444444443     58999986431      11   1111 111134678889999998899999999999988421   


Q ss_pred             C-c-ceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          222 T-L-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       222 ~-~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      . + +.........++.++++..++..++..+-.....++...++            . .....+..|...++|.+|++.
T Consensus       159 Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr------------~-p~~~~ld~~G~~lnCss~~~~  225 (933)
T KOG2114|consen  159 DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR------------T-PSLKVLDNNGISLNCSSFSDG  225 (933)
T ss_pred             ccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC------------C-cceeeeccCCccceeeecCCC
Confidence            1 1 11112234568999999888777332221111111111111            1 112234566678999999875


Q ss_pred             CceEEeecCCCcEEEeecC
Q 020461          300 GKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       300 ~~~lat~s~Dg~i~l~~~~  318 (326)
                      ...|+.|+ +..+.+++-+
T Consensus       226 t~qfIca~-~e~l~fY~sd  243 (933)
T KOG2114|consen  226 TYQFICAG-SEFLYFYDSD  243 (933)
T ss_pred             CccEEEec-CceEEEEcCC
Confidence            55455443 4455554443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.31  E-value=0.0064  Score=56.68  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=60.6

Q ss_pred             EEEeeCCCcEEEEECCCCc--cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE-Eee-ccceE
Q 020461          161 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YVT-ERPVN  236 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~-~~~~~  236 (326)
                      -+.|-++..+..||.+-..  ++..............|++-+.+| +||.|+.+|.||+||. .+..-++ ++. +.+|.
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPII  622 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCee
Confidence            3557778889999987532  221111122234557788888777 7999999999999994 3332233 222 56899


Q ss_pred             EEEeCCCCCeeEEec
Q 020461          237 AVTMSPLLDHVVLGG  251 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~  251 (326)
                      .+..+.+|.+++++.
T Consensus       623 ~iDvt~DGkwilaTc  637 (794)
T PF08553_consen  623 GIDVTADGKWILATC  637 (794)
T ss_pred             EEEecCCCcEEEEee
Confidence            999999999988654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.29  E-value=0.001  Score=38.08  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=31.1

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER   44 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~   44 (326)
                      +.-...|.+++|+|...+||.+..+|.|.++.+ ++++
T Consensus         8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen    8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            334467999999999999999999999999987 5544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.29  E-value=0.027  Score=38.72  Aligned_cols=65  Identities=17%  Similarity=0.098  Sum_probs=47.3

Q ss_pred             eeEEEEc---cCC-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461           13 LTYLKYN---KDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus        13 i~~~~~s---~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      |+++++.   -|| +.|+.||.|..||+|+  ..+.+.++.. ++.|.++.-... ..|+-+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            4455544   444 4799999999999997  4577777766 446666655444 56888999999999975

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.23  E-value=0.0011  Score=37.96  Aligned_cols=30  Identities=20%  Similarity=0.329  Sum_probs=27.8

Q ss_pred             CcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          288 FGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       288 ~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      ..+|..++|+|...++|.|+.||.|.++++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            356999999999999999999999999988

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.22  E-value=0.078  Score=42.76  Aligned_cols=201  Identities=14%  Similarity=0.154  Sum_probs=100.5

Q ss_pred             eeeecCCceeEEEEccCCCEEE-eecCCCCeEEEecCCCCeeeeccCc-ccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            5 LMKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .+.+-...+..++|+|+.+.|+ .....+.|...+. +|+.+..+.-. .+....|++..++.++++--.++.+.+.++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            3445556799999999877555 4556666666665 57776665422 3457788887777766665567877777763


Q ss_pred             CCcE-EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           83 TGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .... +..-.                                +..+.          +.....++..+--++|+|.++.|
T Consensus        95 ~~~~~~~~~~--------------------------------~~~~~----------l~~~~~~N~G~EGla~D~~~~~L  132 (248)
T PF06977_consen   95 DDTTSLDRAD--------------------------------VQKIS----------LGFPNKGNKGFEGLAYDPKTNRL  132 (248)
T ss_dssp             ---TT--EEE--------------------------------EEEEE-------------S---SS--EEEEEETTTTEE
T ss_pred             ccccccchhh--------------------------------ceEEe----------cccccCCCcceEEEEEcCCCCEE
Confidence            3210 00000                                00000          00001123345567788877766


Q ss_pred             EEeeCCCcEEEEECCC---Cccccc-----cccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461          162 ISAGEDAIVRIWDTET---GKLLKE-----SDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~---~~~~~~-----~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  232 (326)
                      +.+-+..-.+++.++.   ......     +.........+.++.++|. +.+++-...+..|...| .+|+.+..+...
T Consensus       133 ~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~  211 (248)
T PF06977_consen  133 FVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLD  211 (248)
T ss_dssp             EEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-S
T ss_pred             EEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeC
Confidence            6666666566665543   111110     0001112344678888886 55666777788899999 567776665432


Q ss_pred             ----------cceEEEEeCCCCCeeEE
Q 020461          233 ----------RPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       233 ----------~~~~~~~~s~~~~~~~~  249 (326)
                                ....+++|.++|+..++
T Consensus       212 ~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  212 RGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             TTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             CcccCcccccCCccEEEECCCCCEEEE
Confidence                      25789999998865554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.06  E-value=0.19  Score=44.19  Aligned_cols=98  Identities=18%  Similarity=0.192  Sum_probs=59.0

Q ss_pred             EEEEecCCcEEE-EeeCCCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCe--EEEeecCCcc
Q 020461          151 RAVWGPLNRTII-SAGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLE  224 (326)
Q Consensus       151 ~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~--i~iwd~~~~~  224 (326)
                      ...|+|+|+.|+ +...||.  |.+.|+..++..+ +....+.   -+.=.|+|||++++-.+. .|.  |.+.|+...+
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi---~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGI---NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcc---ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            356899998665 5566775  5555776655322 3222222   225578999999886654 444  5666666555


Q ss_pred             eEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461          225 LIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      ..+-......-..-.++|+++.++....
T Consensus       318 ~~riT~~~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         318 VTRLTFSGGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence            4222222222336778999999887663

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.01  E-value=0.037  Score=48.79  Aligned_cols=143  Identities=11%  Similarity=0.093  Sum_probs=71.1

Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (326)
                      .....+.++|+++.++. +.||...|+.....   +.     ...+.....+|.+.+ .+|+-...++|+++.--..+..
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cc-----cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence            34667899999999888 45666667763221   11     123456778888854 5677766888999632222222


Q ss_pred             EEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461          227 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG  306 (326)
Q Consensus       227 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~  306 (326)
                      ..+..+..+..+--   |..+...+ .+              .+.+|+..++..+..+.-  .+|..|.||++|.++|-.
T Consensus       103 k~i~~~~~~~~If~---G~LL~~~~-~~--------------~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~  162 (443)
T PF04053_consen  103 KSIKLPFSVEKIFG---GNLLGVKS-SD--------------FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALV  162 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEE-TT--------------EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE
T ss_pred             eEEcCCcccceEEc---CcEEEEEC-CC--------------CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEE
Confidence            23333322222222   33333322 11              245566665555555432  348999999999999998


Q ss_pred             cCCCcEEEeecCCC
Q 020461          307 GEDGYVRLHHFDPD  320 (326)
Q Consensus       307 s~Dg~i~l~~~~~~  320 (326)
                      +.+ .+.|.+++.+
T Consensus       163 t~~-~i~il~~~~~  175 (443)
T PF04053_consen  163 TKD-SIYILKYNLE  175 (443)
T ss_dssp             -S--SEEEEEE-HH
T ss_pred             eCC-eEEEEEecch
Confidence            855 6677666544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.00  E-value=0.19  Score=43.67  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=79.9

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE-EEe-cCCCcceeeee--c-CCeEEEEEcCccceeceeeeeeeec
Q 020461           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TFN-FDSPARSVDFA--V-GDKLAVITTDPFMELNSAIHVKRIA  128 (326)
Q Consensus        54 ~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~  128 (326)
                      .|..++|+++...|+.+-..|-|-+|-...++.-. ... .........+.  . ...+.        .      +..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------d------i~~r~   68 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLT--------D------ISDRA   68 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEE--------E-------GGG-
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceE--------E------ehhhC
Confidence            47889999998889999999999998775543211 000 00000000000  0 00000        0      00000


Q ss_pred             cCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccc--c---ccCcceeeEEEEEc---
Q 020461          129 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD--K---ETGHKKTITSLAKA---  200 (326)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~---~~~h~~~v~~v~~s---  200 (326)
                      .....++-.+...+....++|++++.| +=.+++.|..+|.+.|.|++....+..-.  .   .......++++.|+   
T Consensus        69 ~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~  147 (395)
T PF08596_consen   69 PPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT  147 (395)
T ss_dssp             -TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE
T ss_pred             CcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe
Confidence            000011223444555568899999987 45689999999999999998665544311  1   11233456777665   


Q ss_pred             --CCC---CeEEEEeCCCeEEEeecC
Q 020461          201 --ADG---SHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       201 --~~~---~~l~s~s~dg~i~iwd~~  221 (326)
                        .|+   .++++|...|.+.+|.+-
T Consensus       148 ~~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  148 LGGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             -TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             cCCCcccceEEEEEeCCCCEEEEEEe
Confidence              233   469999999999999764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.027  Score=49.15  Aligned_cols=146  Identities=22%  Similarity=0.313  Sum_probs=82.5

Q ss_pred             EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCcc-ceeceeeeeeeeccCCCCCCCceEEEeccC
Q 020461           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF-MELNSAIHVKRIARDPADQGGESVLILKGP  145 (326)
Q Consensus        67 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (326)
                      |.++.....+.--|++.|+.+..+.+...+....+.++.+..-...... +.++.. .+.++  ++-.++...+....+|
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n-~vfri--DpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDN-SVFRI--DPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCC-ceEEe--cccccCcceeeeeecc
Confidence            4455555667777999999999998877766666665544332222111 111110 00000  0101111122223333


Q ss_pred             c----cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          146 Q----GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       146 ~----~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      +    ..-.|.+-.. ..+|+.||.+|.||+||. .+...++.  .++-..+|+.+..+.+|+.+++.+. .++.+-|+
T Consensus       426 qy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             ccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhc--ccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence            2    1122333333 357899999999999997 44443333  3456689999999999998877664 45555554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.88  E-value=0.00032  Score=61.77  Aligned_cols=168  Identities=17%  Similarity=0.205  Sum_probs=93.8

Q ss_pred             eccCccceeEEEEecCCc-EEEEe----eCCCcEEEEECCCC--ccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe
Q 020461          142 LKGPQGRINRAVWGPLNR-TIISA----GEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~-~l~s~----~~d~~i~~wd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~  214 (326)
                      ..++..+.++++|++... .|+.|    -.|..+.|||+.++  -+........+......+++|..+.+.+++|.....
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence            345667788899998654 44444    23557999999876  221111111123344558899999999999999999


Q ss_pred             EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461          215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (326)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  294 (326)
                      ++++|+|.............+.++...|.....+++..++  .++.+|... ..+     ......+.........+..+
T Consensus       178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg--~iAiwD~~r-nie-----npl~~i~~~~N~~~~~l~~~  249 (783)
T KOG1008|consen  178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDG--DIAIWDTYR-NIE-----NPLQIILRNENKKPKQLFAL  249 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccC--ceeeccchh-hhc-----cHHHHHhhCCCCcccceeeE
Confidence            9999998432222222233566777787433333332222  244455211 000     00000011111112358999


Q ss_pred             EECCCCc-eEEeecCC-CcEEEeec
Q 020461          295 AFNPDGK-SFSSGGED-GYVRLHHF  317 (326)
Q Consensus       295 ~~s~d~~-~lat~s~D-g~i~l~~~  317 (326)
                      +|.|... .+|+.+.| ++|++...
T Consensus       250 aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  250 AYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             EeccCCcchhhhhccCcceEEEecc
Confidence            9999765 46767665 57777543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.80  E-value=0.27  Score=41.98  Aligned_cols=293  Identities=18%  Similarity=0.142  Sum_probs=113.9

Q ss_pred             EEccCCCE-EEeecCCCCeEEE--ecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC
Q 020461           17 KYNKDGDL-LFSCAKDHTPTVW--FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (326)
Q Consensus        17 ~~s~~~~~-l~s~~~d~~v~iw--~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~   93 (326)
                      +|.+||+. |+++..|+.-.+|  |+++++..+-..+-........++++++.++=......++--|+++.+....+..+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            67889964 5555556665555  88888766544432222334556788777654445567788899888876666554


Q ss_pred             CCcc-eeeee-c-CC-eEEEEEcCcc--ceec------------eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           94 SPAR-SVDFA-V-GD-KLAVITTDPF--MELN------------SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        94 ~~~~-~~~~~-~-~~-~~~~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      ..-. ...+. + +. +++.+-....  ..+.            ....+..+.    ..+++....+ .....+..+.|+
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id----l~tG~~~~v~-~~~~wlgH~~fs  196 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID----LKTGERKVVF-EDTDWLGHVQFS  196 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE----TTT--EEEEE-EESS-EEEEEEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE----CCCCceeEEE-ecCccccCcccC
Confidence            3322 22332 1 12 2221111000  0000            000000000    0122222222 234567889999


Q ss_pred             cCCcEEEEee----CCC-cEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEe-----CCCeEEEeecCCcc
Q 020461          156 PLNRTIISAG----EDA-IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGS-----LDKSAKLWDARTLE  224 (326)
Q Consensus       156 ~~~~~l~s~~----~d~-~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-----~dg~i~iwd~~~~~  224 (326)
                      |....++.=+    .+. .-|||-+++ +...+.+... .....+..=-|.+||..+.--+     .+..|.-.|+.+++
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            9877555432    233 236676542 3333333222 1234455557899998766432     35567778888876


Q ss_pred             eEEEEeeccceEEEEeCCCCCeeEEecCCC-cceeEeecc--cCceeeeEeecccceee---------eccccccCcc-e
Q 020461          225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTTDH--RAGKFEAKFFDKILQEE---------IGGVKGHFGP-I  291 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~d~--~~~~~~~~~~~~~~~~~---------~~~~~~h~~~-v  291 (326)
                      ...-...+ ...-.-.+++++. +++-|.| ...+.-.+.  -.....+++++...+..         ...+.+|.-. =
T Consensus       276 ~~~~~~~p-~~~H~~ss~Dg~L-~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h  353 (386)
T PF14583_consen  276 RRRLMEMP-WCSHFMSSPDGKL-FVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH  353 (386)
T ss_dssp             EEEEEEE--SEEEEEE-TTSSE-EEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred             ceEEEeCC-ceeeeEEcCCCCE-EEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence            54322222 2223334555544 4443332 221110000  00111233333322211         1112222111 1


Q ss_pred             eEEEECCCCceE-EeecCCCcEEEeec
Q 020461          292 NALAFNPDGKSF-SSGGEDGYVRLHHF  317 (326)
Q Consensus       292 ~~v~~s~d~~~l-at~s~Dg~i~l~~~  317 (326)
                      -...|||||+++ .++...|...|+-+
T Consensus       354 Php~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  354 PHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ---EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCCccCCCCCEEEEECCCCCCccEEEE
Confidence            358999999984 56666887777654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.72  E-value=0.0032  Score=48.69  Aligned_cols=141  Identities=13%  Similarity=0.064  Sum_probs=72.9

Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (326)
                      +..-+.|+.|+-++++..+.-....  .-|...   ...-.-+..++.|+.||.|++|+...............-...++
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse--~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSE--RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhh--hhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence            4455678888887776543221111  112221   11123345799999999999998763211111111111112222


Q ss_pred             CCCCCe--eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC-cceeEEEECCCCceEEee--cCCCcEEEe
Q 020461          241 SPLLDH--VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF-GPINALAFNPDGKSFSSG--GEDGYVRLH  315 (326)
Q Consensus       241 s~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~lat~--s~Dg~i~l~  315 (326)
                      -|.++.  +.+++.+++        +.     +.+.......++....|. .++.....+..++.++.+  |.|..++.|
T Consensus       108 Ip~~~~~~~~c~~~~dg--------~i-----r~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W  174 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDG--------RI-----RACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKW  174 (238)
T ss_pred             cccccccceeEEeccCC--------ce-----eeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhc
Confidence            333333  444333333        22     233333333334444555 566666666677788888  888888888


Q ss_pred             ecCC
Q 020461          316 HFDP  319 (326)
Q Consensus       316 ~~~~  319 (326)
                      ++.+
T Consensus       175 ~ve~  178 (238)
T KOG2444|consen  175 NVEK  178 (238)
T ss_pred             chhh
Confidence            8865

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.69  E-value=0.3  Score=40.94  Aligned_cols=204  Identities=15%  Similarity=0.153  Sum_probs=101.7

Q ss_pred             eEEEEccCCCEEEee--cCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc-CCcEEEEE
Q 020461           14 TYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTF   90 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~--~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~   90 (326)
                      ..+++|.|+++++..  +--.+|.|-|++.++.+.++.- .+.....-.-  .+.|.+-+.||++.-..+. .|+.....
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEee
Confidence            345788999987763  3456788889888888776643 3333222222  2468899999999988887 45544221


Q ss_pred             --ecCCCccee----eee-cCCeEEEEEcCcccee-------ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           91 --NFDSPARSV----DFA-VGDKLAVITTDPFMEL-------NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        91 --~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                        .++.....+    .+. .++.+...+-+.....       ......|.+..+...   +.-  +  ..+.-.-+++++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~---~~~--W--rPGG~Q~~A~~~  247 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK---ADG--W--RPGGWQLIAYHA  247 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH---HTT--E--EE-SSS-EEEET
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc---ccC--c--CCcceeeeeecc
Confidence              111111000    011 1222222221110000       000000110000000   000  0  011223355665


Q ss_pred             CCcEEEEe---eCCC-------cEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEe-CCCeEEEeecCCcc
Q 020461          157 LNRTIISA---GEDA-------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLE  224 (326)
Q Consensus       157 ~~~~l~s~---~~d~-------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s-~dg~i~iwd~~~~~  224 (326)
                      ..+.|+..   +.++       .|-++|+.+++.+..+..    ..++.++..+.+.+ +|++.+ .++.+.+||..+++
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            44433331   1222       377789999888776532    24577888888755 665554 58999999999999


Q ss_pred             eEEEEee
Q 020461          225 LIKTYVT  231 (326)
Q Consensus       225 ~~~~~~~  231 (326)
                      .++++..
T Consensus       324 ~~~~~~~  330 (342)
T PF06433_consen  324 LVRSIEQ  330 (342)
T ss_dssp             EEEEE--
T ss_pred             EEeehhc
Confidence            9888753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.66  E-value=0.26  Score=39.89  Aligned_cols=57  Identities=25%  Similarity=0.393  Sum_probs=44.0

Q ss_pred             EEEccCCCEEEeecCC-----CCeEEEecCCC-CeeeeccCcccceEEEEEcCCCCeEEEEeC
Q 020461           16 LKYNKDGDLLFSCAKD-----HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSA   72 (326)
Q Consensus        16 ~~~s~~~~~l~s~~~d-----~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~   72 (326)
                      =.|||||.+|.+.-+|     |.|=|||...+ ..+.++..|.-.-..+.+.+||+.++.+..
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            4789999999887654     67789988755 567788888666667788999998877654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.58  E-value=0.47  Score=41.84  Aligned_cols=96  Identities=17%  Similarity=0.086  Sum_probs=54.0

Q ss_pred             eeEEEEccCCCEEEee-cC----CCCeEEEecCCCCeeee-ccCcccceEEEEEcCCCCeEEEEeCCC-----------c
Q 020461           13 LTYLKYNKDGDLLFSC-AK----DHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQ-----------T   75 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~-~~----d~~v~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~~~d~-----------~   75 (326)
                      +...++||||+++|-+ +.    ...++++|+++|+.+.. +.. . .-..+.|.++++.|+-...+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3467899999987743 33    34599999999976542 221 1 112389999988765554333           2


Q ss_pred             EEEEEccCCcE--EEEEecCCCc---ceeeeecCCeEEEE
Q 020461           76 AKLWNVETGAQ--LFTFNFDSPA---RSVDFAVGDKLAVI  110 (326)
Q Consensus        76 i~~wd~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~  110 (326)
                      |..|.+.++..  ...++.....   ..+..+.+.+.+++
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i  243 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI  243 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE
Confidence            67777766532  2344332222   23444555555444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.56  E-value=0.46  Score=41.41  Aligned_cols=241  Identities=12%  Similarity=0.070  Sum_probs=116.5

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCe-------------------------e------------------eec
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-------------------------L------------------GTY   48 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-------------------------~------------------~~~   48 (326)
                      .|+.++|+++..-|+.+-..|.|.||.....+.                         +                  ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            478999999988899999999999984421100                         0                  011


Q ss_pred             cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC---------Ccceeeeec----C-C---eEEEEE
Q 020461           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS---------PARSVDFAV----G-D---KLAVIT  111 (326)
Q Consensus        49 ~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~~~~~~----~-~---~~~~~~  111 (326)
                      ....++|++++.|. --+++.|..+|.+.+.|++....++......         .+.+++|..    + .   ..++++
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            34478999999874 4488999999999999998777776643322         223444441    1 1   223333


Q ss_pred             cCccceeceeeeeeeeccCC-CCCCCceEEEeccCccceeEEE-EecC--------------------CcEEEEeeCCCc
Q 020461          112 TDPFMELNSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAV-WGPL--------------------NRTIISAGEDAI  169 (326)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~~~~--------------------~~~l~s~~~d~~  169 (326)
                      ++.-     .+....+.... .............+.++|..+. ++.+                    -+.++....+..
T Consensus       162 Tn~G-----~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  162 TNSG-----NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             ETTS-----EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             eCCC-----CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            3211     01111111000 0000001111112223332222 2110                    022344445667


Q ss_pred             EEEEECCCCccccccccccCcceeeEEEEE-----cCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-----ceEEEE
Q 020461          170 VRIWDTETGKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAVT  239 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~-----s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~  239 (326)
                      +|++...+.+......   ........+.+     ...+..|++-..+|.++++.+=..+.+.......     .....+
T Consensus       237 irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss  313 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS  313 (395)
T ss_dssp             EEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred             eEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence            9999987766544322   11112222233     2356678888899999999987766666654322     244566


Q ss_pred             eCCCCCeeEEecCCCcceeEee
Q 020461          240 MSPLLDHVVLGGGQDASAVTTT  261 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~  261 (326)
                      ++++|+.++..+-.+...+..+
T Consensus       314 is~~Gdi~~~~gpsE~~l~sv~  335 (395)
T PF08596_consen  314 ISRNGDIFYWTGPSEIQLFSVW  335 (395)
T ss_dssp             E-TTS-EEEE-SSSEEEEEEEE
T ss_pred             ECCCCCEEEEeCcccEEEEEEE
Confidence            7888888777665554444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.41  E-value=0.63  Score=42.93  Aligned_cols=186  Identities=11%  Similarity=0.172  Sum_probs=91.4

Q ss_pred             CceeEEEEccCCCEEEeec------CCCCeEEEecC-CCCeeeeccCcccceEEEEEcCCCCeEEEEeCC-CcEEEE---
Q 020461           11 RPLTYLKYNKDGDLLFSCA------KDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLW---   79 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~------~d~~v~iw~~~-~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-~~i~~w---   79 (326)
                      ..+...+.||||+.++..-      .|..-.||-.. .+.......+.  ......|+|||+.+++.+.. ..+++.   
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence            3567889999999877655      35444566432 22222222332  37788999998877766532 122222   


Q ss_pred             --------EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCc-eE----EEeccCc
Q 020461           80 --------NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SV----LILKGPQ  146 (326)
Q Consensus        80 --------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~  146 (326)
                              ++..++...  .++..+..+.++++...++...+      ..+.+-.+.+..   .+. .+    ....+..
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~------g~v~Va~Vvr~~---~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG------GKVYLAVVEQTE---DGQYALTNPREVGPGLG  496 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC------CEEEEEEEEeCC---CCceeecccEEeecccC
Confidence                    333333222  33456778888876654443222      122222223311   122 11    1112233


Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECC-CCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg  213 (326)
                      ..+..+.|.+++.++ .+..++.-.+|.+. .|.....+ ........+.+++-+++  .++....++
T Consensus       497 ~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        497 DTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             CccccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCc
Confidence            345778899988854 44555544555543 12221111 11112345666665542  344444454

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.29  E-value=0.59  Score=39.65  Aligned_cols=195  Identities=13%  Similarity=0.132  Sum_probs=100.0

Q ss_pred             CeEEEecCCCCeeeeccCc-ccceEE---EEEcCC----CCeEEEEeC----------CCcEEEEEccCC-----cE--E
Q 020461           33 TPTVWFADNGERLGTYRGH-NGAVWC---CDVSRD----SMTLITGSA----------DQTAKLWNVETG-----AQ--L   87 (326)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~h-~~~V~~---~~~~~~----~~~l~s~~~----------d~~i~~wd~~~~-----~~--~   87 (326)
                      .|++.|..+.+.+.++.-. ...+.+   +.+..+    ..+++.|..          .|.|.++++...     +.  +
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5677777777766554322 223343   334432    356666553          288999999884     22  2


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      .....+.++.++... ++.++++.+.       .+.+.++....   .-.....+. ....+.++.  ..+.+++.|..-
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~~~g~-------~l~v~~l~~~~---~l~~~~~~~-~~~~i~sl~--~~~~~I~vgD~~  148 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVVAVGN-------KLYVYDLDNSK---TLLKKAFYD-SPFYITSLS--VFKNYILVGDAM  148 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEEEETT-------EEEEEEEETTS---SEEEEEEE--BSSSEEEEE--EETTEEEEEESS
T ss_pred             EEEeecCcceEhhhh-CCEEEEeecC-------EEEEEEccCcc---cchhhheec-ceEEEEEEe--ccccEEEEEEcc
Confidence            233456666666544 4444444332       22223332211   001111111 112344443  335688888888


Q ss_pred             CcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC-----------cceEEEEeeccce
Q 020461          168 AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-----------LELIKTYVTERPV  235 (326)
Q Consensus       168 ~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-----------~~~~~~~~~~~~~  235 (326)
                      ..+.++.... ...+..+... .....++++.+-+++..++.+..+|.+.++....           .+....+..+..+
T Consensus       149 ~sv~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v  227 (321)
T PF03178_consen  149 KSVSLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIV  227 (321)
T ss_dssp             SSEEEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-E
T ss_pred             cCEEEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCcc
Confidence            8888774432 2223222222 2245588888876667999999999999987652           1234445556677


Q ss_pred             EEE---EeCC
Q 020461          236 NAV---TMSP  242 (326)
Q Consensus       236 ~~~---~~s~  242 (326)
                      +++   ++.|
T Consensus       228 ~~~~~~~l~~  237 (321)
T PF03178_consen  228 NSFRRGSLIP  237 (321)
T ss_dssp             EEEEE--SS-
T ss_pred             ceEEEEEeee
Confidence            777   5555

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.27  E-value=0.56  Score=39.30  Aligned_cols=226  Identities=12%  Similarity=0.121  Sum_probs=113.4

Q ss_pred             EEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe-cC-
Q 020461           17 KYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FD-   93 (326)
Q Consensus        17 ~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~-   93 (326)
                      .|.++.+ ++.+--..+.|.-|+..+++.. .+.. .+.+.++..-.++..|+++ ..+ +.+++.+++..+..+. .. 
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccC
Confidence            4556666 4445556667777776655321 2222 2223333333334445444 333 4677776665532221 11 


Q ss_pred             ----CCcceeeeecCCeEEEEEcCc----cceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           94 ----SPARSVDFAVGDKLAVITTDP----FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        94 ----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                          ...+.....+...+.+.....    .......-.++++..     .+.......++-..-+.++|||+++.|+.+-
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-----~g~~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-----DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-----CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence                111222333333443332220    000000001111110     1233333444444557799999998777664


Q ss_pred             C-CCcEEEEECCC--Cccccc--cccccCcceeeEEEEEcCCCCeEEEEeCCC-eEEEeecCCcceEEEEeec-cceEEE
Q 020461          166 E-DAIVRIWDTET--GKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTE-RPVNAV  238 (326)
Q Consensus       166 ~-d~~i~~wd~~~--~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~-~~~~~~  238 (326)
                      . .+.|.-|+...  +..-..  ........+..-.++.+.+|.+-+++-.+| .|..|+.+ ++.+..+..+ ..+.++
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~  260 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP  260 (307)
T ss_pred             CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence            4 57788887652  211110  000111234455677788887776555554 89999999 8888888765 566666


Q ss_pred             EeC-CCCCeeEEecC
Q 020461          239 TMS-PLLDHVVLGGG  252 (326)
Q Consensus       239 ~~s-~~~~~~~~~~~  252 (326)
                      +|- ++.+.+++++.
T Consensus       261 ~FgG~~~~~L~iTs~  275 (307)
T COG3386         261 AFGGPDLNTLYITSA  275 (307)
T ss_pred             eEeCCCcCEEEEEec
Confidence            664 55566665543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.27  E-value=0.44  Score=38.09  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=51.7

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEE-EEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      |++++.|...|.+++-+.++|+..-.+..-. .|.+ ....+++..+..++.|++....|..+-.++++.+.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            5667778888888888888887766554422 2222 22456788999999999999999998888776554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.22  E-value=0.69  Score=39.83  Aligned_cols=71  Identities=15%  Similarity=0.047  Sum_probs=43.1

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-eccCc----------------ccceEEEEEcCCCCeEEEEeC
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGH----------------NGAVWCCDVSRDSMTLITGSA   72 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-~~~~h----------------~~~V~~~~~~~~~~~l~s~~~   72 (326)
                      ...+....|||+|+.+|-... +.+.+++..++...+ +..|-                -+.-.++.||||+++|+..-.
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            356788999999999887754 678888877664432 22220                011245779999998877664


Q ss_pred             -CCcEEEEEc
Q 020461           73 -DQTAKLWNV   81 (326)
Q Consensus        73 -d~~i~~wd~   81 (326)
                       +..|+.+.+
T Consensus       121 d~~~v~~~~~  130 (353)
T PF00930_consen  121 DEREVPEYPL  130 (353)
T ss_dssp             E-TTS-EEEE
T ss_pred             CCcCCceEEe
Confidence             455555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.11  Score=49.52  Aligned_cols=73  Identities=19%  Similarity=0.378  Sum_probs=55.2

Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd  219 (326)
                      .+++|++++|+.+|..++.|-.+|.|.+||+..++..+.+.........+..+.+..++..++++...|.  +|.
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            3578999999999999999999999999999988877665432222233445556667778889888885  554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.83  Score=39.80  Aligned_cols=203  Identities=17%  Similarity=0.154  Sum_probs=121.6

Q ss_pred             eEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccCCcEEE
Q 020461           14 TYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLF   88 (326)
Q Consensus        14 ~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~   88 (326)
                      ..+++++.++ .++....+..|.+.|..+........ +.  .-..++++++++.+..+..   ++++.+.|..+++.+.
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            4667788887 55666667899999977666554432 22  4456889999987766665   6888888888888776


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-----eccCccceeEEEEecCCcEEEE
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-----LKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ..........+.+.+....+.+....    ...+.+.....       ..+..     ...-......+.++|++..+..
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~----~~~v~vi~~~~-------~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSD----DNTVSVIDTSG-------NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecC----CCeEEEEeCCC-------cceeccccccccccCCCCceEEECCCCCEEEE
Confidence            64332222455556555533333211    11111111110       00110     0011122345778999986554


Q ss_pred             eeCC---CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcceEEEEee
Q 020461          164 AGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       164 ~~~d---~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~  231 (326)
                      ....   +.+...|..++....... ..+-. ....+..+|+|.++.+... .+.+.+-|..+.........
T Consensus       224 ~~~~~~~~~v~~id~~~~~v~~~~~-~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         224 ANDGSGSNNVLKIDTATGNVTATDL-PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             EeccCCCceEEEEeCCCceEEEecc-ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            4333   589999988776554311 11222 4567889999999888854 48899999988877776543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.97  E-value=0.026  Score=53.30  Aligned_cols=70  Identities=24%  Similarity=0.411  Sum_probs=55.8

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEE---EcCCCCeEEEEeCCCcEEEEEcc
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD---VSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~---~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .+|++++|+.+|.+++.|-.+|.|.+||..++...+.+..|..++..+-   +..++..++++..-|.  +|.+.
T Consensus       131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            5799999999999999999999999999999998888887777655543   3334456777777775  67653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.94  E-value=0.32  Score=33.52  Aligned_cols=55  Identities=15%  Similarity=0.356  Sum_probs=41.8

Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      ..|+.|++|..||+|+-.  +.+.++.    -...|++++.... ..++.+..+|+|-+|+.
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEIT----ETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEe----cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            478999999999999854  3444433    2456888887766 57999999999988875

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.83  E-value=0.78  Score=37.16  Aligned_cols=185  Identities=13%  Similarity=0.070  Sum_probs=104.9

Q ss_pred             CceeEEEEccCCCEEEeecCCC--CeEEEecCCCCeeeeccCccc-ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~--~v~iw~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      .....+.|..+|.++-|++.-|  .|+.+|+++++......-... .=..++... ++...-.=.+++..+||.++-+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence            3456888888899999988766  788899999987654322111 112333332 333334456778889999887776


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      ..+.++.....+.                                                       .++..|+.....
T Consensus       124 ~~~~y~~EGWGLt-------------------------------------------------------~dg~~Li~SDGS  148 (264)
T PF05096_consen  124 GTFPYPGEGWGLT-------------------------------------------------------SDGKRLIMSDGS  148 (264)
T ss_dssp             EEEE-SSS--EEE-------------------------------------------------------ECSSCEEEE-SS
T ss_pred             EEEecCCcceEEE-------------------------------------------------------cCCCEEEEECCc
Confidence            6665432211111                                                       123344544455


Q ss_pred             CcEEEEECCCCccccccccccCccee---eEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-------------
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-------------  231 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~---v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------  231 (326)
                      ..|..+|..+.+..+.+... ....+   +..+-+- +|...|-.=....|..-|+.+|+.+..+..             
T Consensus       149 ~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~  226 (264)
T PF05096_consen  149 SRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSR  226 (264)
T ss_dssp             SEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST
T ss_pred             cceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccc
Confidence            66777777665554443321 11122   3334443 454444444556777888888888776531             


Q ss_pred             ---ccceEEEEeCCCCCeeEEecCC
Q 020461          232 ---ERPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       232 ---~~~~~~~~~s~~~~~~~~~~~~  253 (326)
                         ..-.|++++.|..+.++++|..
T Consensus       227 ~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  227 QPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             --TTS-EEEEEEETTTTEEEEEETT
T ss_pred             cccCCeeEeEeEeCCCCEEEEEeCC
Confidence               1237899999999998887753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.83  E-value=1.8  Score=41.33  Aligned_cols=136  Identities=19%  Similarity=0.263  Sum_probs=78.9

Q ss_pred             cEEEEECCCCccccccccc-cCcceeeEEEEEcCC-CCeEEEEeC----------CCeEEEeecCCc---ceEEEEeecc
Q 020461          169 IVRIWDTETGKLLKESDKE-TGHKKTITSLAKAAD-GSHFLTGSL----------DKSAKLWDARTL---ELIKTYVTER  233 (326)
Q Consensus       169 ~i~~wd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~-~~~l~s~s~----------dg~i~iwd~~~~---~~~~~~~~~~  233 (326)
                      .++++|.++.+.+...... ...-..+.++.+..| +.+++.|..          .|.|.++.+...   +.+.+.....
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            3677777766544322111 011123455557666 777887763          466777766552   2222222222


Q ss_pred             ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                      .+.+  +-.....++++.+.               .+++|+....+++...-.|..++..+.....|..+|.|.--+.+.
T Consensus       831 av~a--L~~fngkllA~In~---------------~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sit  893 (1096)
T KOG1897|consen  831 AVYA--LVEFNGKLLAGINQ---------------SVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSIT  893 (1096)
T ss_pred             ceee--hhhhCCeEEEecCc---------------EEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEE
Confidence            2222  22222334443322               345555555555555566778899999988999999999999999


Q ss_pred             EeecCCCc
Q 020461          314 LHHFDPDY  321 (326)
Q Consensus       314 l~~~~~~~  321 (326)
                      +-.+++..
T Consensus       894 ll~y~~~e  901 (1096)
T KOG1897|consen  894 LLQYKGDE  901 (1096)
T ss_pred             EEEEeccC
Confidence            98777665

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.80  E-value=0.36  Score=44.47  Aligned_cols=156  Identities=12%  Similarity=0.081  Sum_probs=83.5

Q ss_pred             ceeEEEEecCCcEEEEee------CCCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-------
Q 020461          148 RINRAVWGPLNRTIISAG------EDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-------  212 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~------~d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-------  212 (326)
                      .+...+++|+++.++..-      .|+.  |.+++.. +.. ..+.  .+  ...+.-.|+|||..+++.+..       
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt--~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL--EG--HSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee--cC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence            466788999998776544      3444  4444542 222 2221  12  236777899998877776532       


Q ss_pred             -----CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEe-ecccCceeeeEeecccceeeeccccc
Q 020461          213 -----KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTT-TDHRAGKFEAKFFDKILQEEIGGVKG  286 (326)
Q Consensus       213 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~  286 (326)
                           +.+.+.+++.++...  .....+..+.+||+|..+++..+ ....+.. .....+.  ..+-.   ..++.  .+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~--~~l~~---~~~l~--~~  494 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQ--YALTN---PREVG--PG  494 (591)
T ss_pred             ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCc--eeecc---cEEee--cc
Confidence                 233333454444332  22456899999999998876542 2222211 1111121  11100   01111  12


Q ss_pred             cCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          287 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       287 h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      -...+.+++|.+++..+ .+..++...+|.+.-+
T Consensus       495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD  527 (591)
T ss_pred             cCCccccceEecCCEEE-EEecCCCCceEEEecC
Confidence            22346789999988854 5555666666665544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.79  E-value=1.2  Score=38.82  Aligned_cols=153  Identities=15%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC--------------------CCeEEEeecCCcceEEE
Q 020461          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL--------------------DKSAKLWDARTLELIKT  228 (326)
Q Consensus       169 ~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~  228 (326)
                      .+.+.|-++.+.........+...--..+-+.|..+.++|...                    ..++.+||+.+.+.+++
T Consensus       158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~  237 (461)
T PF05694_consen  158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT  237 (461)
T ss_dssp             EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred             cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence            4555555544333322221111222344455666666666542                    45899999999999999


Q ss_pred             Eeecc---ceEEEE--eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeee---------ccccccCcceeEE
Q 020461          229 YVTER---PVNAVT--MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI---------GGVKGHFGPINAL  294 (326)
Q Consensus       229 ~~~~~---~~~~~~--~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~v~~v  294 (326)
                      +....   .+-.+-  ..|....-+++..-...++..+....+.+..+..-....+++         ..+..-.+-|++|
T Consensus       238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI  317 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI  317 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred             EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence            86542   122333  346666555544333333333332334443322211111111         1111112457999


Q ss_pred             EECCCCceEEeecC-CCcEEEeecCCCc
Q 020461          295 AFNPDGKSFSSGGE-DGYVRLHHFDPDY  321 (326)
Q Consensus       295 ~~s~d~~~lat~s~-Dg~i~l~~~~~~~  321 (326)
                      .+|.|.++|..+.. +|.||.+++.+-+
T Consensus       318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  318 LISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             EE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             EEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            99999999866555 9999998876543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.65  E-value=1.1  Score=39.37  Aligned_cols=31  Identities=29%  Similarity=0.402  Sum_probs=26.6

Q ss_pred             CcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          288 FGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       288 ~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      .+++..|+.||+|+++|.-..+|.+.+.+-|
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence            3579999999999999999999998886543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.57  E-value=1.9  Score=39.74  Aligned_cols=224  Identities=14%  Similarity=0.101  Sum_probs=99.5

Q ss_pred             cCCCEEEeecCC------CCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCC------CcEEEEEccCCcE
Q 020461           20 KDGDLLFSCAKD------HTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQ   86 (326)
Q Consensus        20 ~~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~   86 (326)
                      ..+.+++.||.+      .++..+|..++.......- +...-.++++. ++...++||.|      .++..||..+++ 
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence            345566777766      3667788877755432221 22223334433 45777888888      346677776655 


Q ss_pred             EEEEe-cCCCcceeeee-cCCeEEEEEcCccceeceeeeeeeecc-CCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           87 LFTFN-FDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        87 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ..... ...+-...... .++.+.++++.........++..+... .+....       .-....-...+..-.+...+.
T Consensus       361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-------~m~~~r~~~gv~~~~g~iYi~  433 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-------PMLTRRSGHGVAVLGGKLYII  433 (571)
T ss_pred             eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-------CCCcceeeeEEEEECCEEEEE
Confidence            22111 11111111111 234444444322111111111111111 010000       000011111122234566777


Q ss_pred             eeCCC------cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe-----EEEeecCCcceEEEEeec
Q 020461          164 AGEDA------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELIKTYVTE  232 (326)
Q Consensus       164 ~~~d~------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~  232 (326)
                      ||.++      ++..||..+.+... .....--+. -..++ .-++...+.|+.|+.     +..+|.++.+=..--...
T Consensus       434 GG~~~~~~~l~sve~YDP~t~~W~~-~~~M~~~R~-~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~  510 (571)
T KOG4441|consen  434 GGGDGSSNCLNSVECYDPETNTWTL-IAPMNTRRS-GFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT  510 (571)
T ss_pred             cCcCCCccccceEEEEcCCCCceee-cCCcccccc-cceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence            77555      46788887765432 111100001 11122 235667778887763     666787765432221122


Q ss_pred             cceEEEEeCCCCCeeEEecCCCc
Q 020461          233 RPVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                      .+.........++.+++.||.++
T Consensus       511 ~~rs~~g~~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  511 SPRSAVGVVVLGGKLYAVGGFDG  533 (571)
T ss_pred             cccccccEEEECCEEEEEecccC
Confidence            23334444445566777666554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.41  E-value=1.4  Score=37.13  Aligned_cols=271  Identities=15%  Similarity=0.139  Sum_probs=136.1

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEccCCcEEEEEecCCCc-----
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFDSPA-----   96 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~-----   96 (326)
                      +.+.+.|..+++.+..+.+  +..-.+..+|+++.+++++          ..-.|.+||.++-.....+..+...     
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4788999988888776653  2223355789999888754          2446899999987776665544321     


Q ss_pred             ---ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-CcEEEEeeCCCcEEE
Q 020461           97 ---RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRI  172 (326)
Q Consensus        97 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d~~i~~  172 (326)
                         ....++.+++.+.+..   +.....+.+-++..      .+-+..+.-+  .  |.-.=|. .+.|.+-+.||++.-
T Consensus        95 ~~~~~~~ls~dgk~~~V~N---~TPa~SVtVVDl~~------~kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~  161 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQN---FTPATSVTVVDLAA------KKVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLT  161 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEE---ESSSEEEEEEETTT------TEEEEEEEGT--S--EEEEEEEETTEEEEEETTSCEEE
T ss_pred             ccccceEEccCCcEEEEEc---cCCCCeEEEEECCC------CceeeeecCC--C--EEEEEecCCCceEEEecCCceEE
Confidence               1223444555443321   01111222222211      1111111111  0  1111122 246788889999988


Q ss_pred             EECC-CCcccccccc--ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEEEeec-----------cceE
Q 020461          173 WDTE-TGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYVTE-----------RPVN  236 (326)
Q Consensus       173 wd~~-~~~~~~~~~~--~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~-----------~~~~  236 (326)
                      ..+. .|+.......  ...+......-+++..+..++=-+.+|.|+--|+.....  ...+...           .--.
T Consensus       162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q  241 (342)
T PF06433_consen  162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQ  241 (342)
T ss_dssp             EEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS
T ss_pred             EEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCccee
Confidence            8886 4443321100  011111122223444444555577788888877765432  1112110           1123


Q ss_pred             EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEE-eecCCCcEEE
Q 020461          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFS-SGGEDGYVRL  314 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~la-t~s~Dg~i~l  314 (326)
                      -+++++..+.+++.-..+.    -..+....-+++.++..+++.+..+.. ..++.+|+.+-|.+ .|. ....++.+.+
T Consensus       242 ~~A~~~~~~rlyvLMh~g~----~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v  316 (342)
T PF06433_consen  242 LIAYHAASGRLYVLMHQGG----EGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDV  316 (342)
T ss_dssp             -EEEETTTTEEEEEEEE------TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred             eeeeccccCeEEEEecCCC----CCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence            4566665555443211110    122334445677777777777665542 24688999987765 554 4456899999


Q ss_pred             eecCCCce
Q 020461          315 HHFDPDYF  322 (326)
Q Consensus       315 ~~~~~~~~  322 (326)
                      |+....-+
T Consensus       317 ~D~~tGk~  324 (342)
T PF06433_consen  317 YDAATGKL  324 (342)
T ss_dssp             EETTT--E
T ss_pred             EeCcCCcE
Confidence            88765433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.21  E-value=0.4  Score=41.82  Aligned_cols=86  Identities=14%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccc-eEEEEEc-CC----------------CCeEE
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-VWCCDVS-RD----------------SMTLI   68 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~-~~----------------~~~l~   68 (326)
                      ....-.+.+++.+|++++.|+..+-|.|.++|+.++..++.++|...+ +.-+... +.                ..+|+
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            334445789999999998888888899999999999999999886542 3222111 11                12333


Q ss_pred             E-EeCCCcEEEEEccCCcEEEEEec
Q 020461           69 T-GSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        69 s-~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      . +-.-|.|.+|.++.|..+..+..
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEEEe
Confidence            3 45678999999999988776643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.16  E-value=0.094  Score=29.09  Aligned_cols=35  Identities=14%  Similarity=0.384  Sum_probs=28.8

Q ss_pred             cceeEEEECCCCc---eEEeecCCCcEEEeecCCCcee
Q 020461          289 GPINALAFNPDGK---SFSSGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       289 ~~v~~v~~s~d~~---~lat~s~Dg~i~l~~~~~~~~~  323 (326)
                      +.|.++.|||+..   +||-+-.-|.|.|++.+.+|-+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~   38 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMR   38 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccc
Confidence            3589999998554   8898899999999999976643

It contains a characteristic DLL sequence motif.

>PHA02713 hypothetical protein; Provisional

Probab=94.99  E-value=2.9  Score=38.55  Aligned_cols=63  Identities=6%  Similarity=0.092  Sum_probs=33.7

Q ss_pred             CCcEEEEeeCC------CcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCC--eEEEeecCC
Q 020461          157 LNRTIISAGED------AIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDART  222 (326)
Q Consensus       157 ~~~~l~s~~~d------~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg--~i~iwd~~~  222 (326)
                      +++..+.||.+      ..+..||..+ .+... +............+.  -++...+.|+.|+  .+..||+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-ITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-ccccCcccccceeEE--ECCEEEEEeeecceeehhhcCccc
Confidence            35556667654      2467899886 44321 222211222222222  2677888999888  555566554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.71  E-value=0.51  Score=41.63  Aligned_cols=111  Identities=8%  Similarity=-0.007  Sum_probs=60.4

Q ss_pred             eeEEEEEcCCCCeEEEE-eCCC----eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce
Q 020461          193 TITSLAKAADGSHFLTG-SLDK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK  267 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~-s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~  267 (326)
                      .+....+||+|++++-+ +..|    ++++.|+++++.+...........+.|.++++.++.....+.....   .....
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~---~~~~~  201 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS---DSGYP  201 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS----CCGCC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccc---cCCCC
Confidence            34467899999988854 3333    5999999999887664333333449999998877655332210000   00012


Q ss_pred             eeeEeecccceee--eccccccCc--ceeEEEECCCCceEEee
Q 020461          268 FEAKFFDKILQEE--IGGVKGHFG--PINALAFNPDGKSFSSG  306 (326)
Q Consensus       268 ~~~~~~~~~~~~~--~~~~~~h~~--~v~~v~~s~d~~~lat~  306 (326)
                      ..++++...+...  .-.+.+...  ....+..++|+++|+..
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~  244 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS  244 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence            2334443322111  011122222  25678899999986543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.68  E-value=1.9  Score=34.96  Aligned_cols=129  Identities=15%  Similarity=0.114  Sum_probs=74.9

Q ss_pred             eeeeccCc-ccceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceece
Q 020461           44 RLGTYRGH-NGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS  120 (326)
Q Consensus        44 ~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (326)
                      .+.++... ....-.+.|.+++.++-+.|.-|  .|+.+|+.+++.......+....    .                  
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F----g------------------   92 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF----G------------------   92 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------E------------------
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----c------------------
Confidence            34444432 23466788877888888888665  68899999998765544332110    0                  


Q ss_pred             eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEc
Q 020461          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA  200 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s  200 (326)
                                      +-+..+   .           ++...---.++...+||.++-+.+.++..    ...-..++  
T Consensus        93 ----------------EGit~~---~-----------d~l~qLTWk~~~~f~yd~~tl~~~~~~~y----~~EGWGLt--  136 (264)
T PF05096_consen   93 ----------------EGITIL---G-----------DKLYQLTWKEGTGFVYDPNTLKKIGTFPY----PGEGWGLT--  136 (264)
T ss_dssp             ----------------EEEEEE---T-----------TEEEEEESSSSEEEEEETTTTEEEEEEE-----SSS--EEE--
T ss_pred             ----------------eeEEEE---C-----------CEEEEEEecCCeEEEEccccceEEEEEec----CCcceEEE--
Confidence                            000000   0           12223345677888999988777665532    22334555  


Q ss_pred             CCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      .|+..|+...-...|+++|.++.+..+.+.
T Consensus       137 ~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  137 SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             cCCCEEEEECCccceEEECCcccceEEEEE
Confidence            456677777667889999999998888775

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.63  E-value=2.6  Score=36.28  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=44.9

Q ss_pred             ccCCCEEEee---------cCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461           19 NKDGDLLFSC---------AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus        19 s~~~~~l~s~---------~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      |||+++++..         +..+.+.|+|+++++....... ...+....|||+|+.++-.. ++-|.+++..+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            5788776652         2346778899998776544443 56788889999999876654 46788888777643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.36  E-value=3.2  Score=36.17  Aligned_cols=186  Identities=12%  Similarity=0.093  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCe-EEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC
Q 020461           56 WCCDVSRDSMT-LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ  134 (326)
Q Consensus        56 ~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (326)
                      ..+++++.+.. .+....+..|.+.|..+.+.............+.+.+..+.+.+.....  .+..+.+.+      ..
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vsvid------~~  148 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN--GNNTVSVID------AA  148 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc--CCceEEEEe------CC
Confidence            45677787774 4445556889999987776665554443445555665554433332211  011111110      01


Q ss_pred             CCceEEEeccCccceeEEEEecCCcEEEEe-eCCCcEEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeEEEEeCC
Q 020461          135 GGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLD  212 (326)
Q Consensus       135 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d  212 (326)
                      .............+ ..++++|++..++.. ..+++|.+.|.......+ ......+-......+.++++|.++......
T Consensus       149 t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         149 TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence            12222222222223 678899999866544 578999999976554432 100011222344678899999976665543


Q ss_pred             ---CeEEEeecCCcceEEE-Eeecc-ceEEEEeCCCCCeeEEe
Q 020461          213 ---KSAKLWDARTLELIKT-YVTER-PVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       213 ---g~i~iwd~~~~~~~~~-~~~~~-~~~~~~~s~~~~~~~~~  250 (326)
                         +.+...|..++..... ...+. ....+..+|.+....+.
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence               5899999998877766 23233 46678889998887765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.99  E-value=3.9  Score=35.74  Aligned_cols=155  Identities=15%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             ccCCCEEEeec------CCCCeEEEecCCCCeeeeccCccc-c--eEEEEEcCCCCeEEEEeC-----------------
Q 020461           19 NKDGDLLFSCA------KDHTPTVWFADNGERLGTYRGHNG-A--VWCCDVSRDSMTLITGSA-----------------   72 (326)
Q Consensus        19 s~~~~~l~s~~------~d~~v~iw~~~~~~~~~~~~~h~~-~--V~~~~~~~~~~~l~s~~~-----------------   72 (326)
                      -|+|++++|+-      .-|-+.+.|-++.+.....+...+ .  -....+.|..+.++|...                 
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            37898888743      224556777777777666654322 1  233445565556666543                 


Q ss_pred             ---CCcEEEEEccCCcEEEEEecCCC---cceeeeecC--CeEEEEEcCccceeceeeeeeeeccCCC-CCCCceEEEec
Q 020461           73 ---DQTAKLWNVETGAQLFTFNFDSP---ARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILK  143 (326)
Q Consensus        73 ---d~~i~~wd~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  143 (326)
                         -.++.+||+.+.+.++++.....   ...+.|..+  .....++..    +  ...++...++.. .-..+.+..+.
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a----L--ss~i~~~~k~~~g~W~a~kVi~ip  291 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA----L--SSSIWRFYKDDDGEWAAEKVIDIP  291 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe----c--cceEEEEEEcCCCCeeeeEEEECC
Confidence               46799999999999988876432   223344432  221111110    0  001111111000 00001111110


Q ss_pred             -----------------cCccceeEEEEecCCcEEE-EeeCCCcEEEEECCCCc
Q 020461          144 -----------------GPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGK  179 (326)
Q Consensus       144 -----------------~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~  179 (326)
                                       .-..-|+.+..|.|.++|. ++-..|.|+-||+....
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                             1134578899999999875 56669999999997643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.98  E-value=0.11  Score=40.57  Aligned_cols=63  Identities=27%  Similarity=0.173  Sum_probs=45.8

Q ss_pred             CCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEE--eCCCcEEEEEccC
Q 020461           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITG--SADQTAKLWNVET   83 (326)
Q Consensus        21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~--~~d~~i~~wd~~~   83 (326)
                      ++.+..+++.|+.+|.|+.+-.+.+...-.|. .++.....+..++.++.+  |.|..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            34567788899999999998888777666677 455555555556667666  7777777777653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.82  E-value=1.1  Score=41.34  Aligned_cols=113  Identities=15%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee--ccceEEEEeC--CCCCeeEEecCCCcceeEeecccCcee-eeE
Q 020461          197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMS--PLLDHVVLGGGQDASAVTTTDHRAGKF-EAK  271 (326)
Q Consensus       197 v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~s--~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~  271 (326)
                      +.-+.-++..+.-+...++.|||.+.+....+...  ...|..+.|.  |++..+++. |.....+-..-.|.... ...
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaV-Gf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAV-GFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEE-EcCcEEEEEEccchhhhcCCc
Confidence            33344444444444556799999998876555433  5678888875  555554443 34333332222221000 000


Q ss_pred             eecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461          272 FFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      -|.......+..+..  .+|.+..|-++|..++.++  +.+.|
T Consensus       114 ~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV~sG--Nqlfv  152 (631)
T PF12234_consen  114 SWAPIRKIDISSHTP--HPIGDSIWLKDGTLVVGSG--NQLFV  152 (631)
T ss_pred             ccceeEEEEeecCCC--CCccceeEecCCeEEEEeC--CEEEE
Confidence            111111111222233  4799999999998876443  44444

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.39  E-value=0.58  Score=25.63  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=27.5

Q ss_pred             CCCCeEEEEe-CCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461          201 ADGSHFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (326)
Q Consensus       201 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (326)
                      |++++|.++. .+++|.++|..+++.+..+........+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            4566666554 578999999999988887765544444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.33  E-value=0.14  Score=47.81  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEE-----------EcCCCCeEEEEeCCCeEEEeecC----
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-----------KAADGSHFLTGSLDKSAKLWDAR----  221 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~-----------~s~~~~~l~s~s~dg~i~iwd~~----  221 (326)
                      ..-++..+-.++.|++...++...  .+.  .+|+..++.++           .||||..|++++.||.+++|.+.    
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~--~l~--rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~  269 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR--SLF--RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK  269 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH--HHH--HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence            445666777788888766544321  111  23655555443           68999999999999999888654    


Q ss_pred             -CcceEEEEe
Q 020461          222 -TLELIKTYV  230 (326)
Q Consensus       222 -~~~~~~~~~  230 (326)
                       ...|++.+.
T Consensus       270 ~~~rclhewk  279 (1283)
T KOG1916|consen  270 IVHRCLHEWK  279 (1283)
T ss_pred             ccHhhhhccC
Confidence             334555554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=3.1  Score=32.34  Aligned_cols=61  Identities=13%  Similarity=0.145  Sum_probs=39.3

Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      --.+|.-..+|.++-+.+..+..    ++.-..++  .|+..|+.++-..++++-|.++.....++.
T Consensus       107 Tw~egvaf~~d~~t~~~lg~~~y----~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~  167 (262)
T COG3823         107 TWKEGVAFKYDADTLEELGRFSY----EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQ  167 (262)
T ss_pred             EeccceeEEEChHHhhhhccccc----CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEE
Confidence            34567777888877666554432    23333444  455667777777789999988877666653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.20  E-value=4.1  Score=33.51  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=41.5

Q ss_pred             cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      ..++.|+.|..+| +.+++........... +...|..+...++-+.|+.- .|+.+.++++..-.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~   67 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLE   67 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEE-cCCccEEEEchhhc
Confidence            4578889998988 8888883332222221 23338888888876655544 35999999987543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.00  E-value=0.7  Score=40.82  Aligned_cols=104  Identities=15%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             EEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEec-----CCCcceeEeecccCceeeeEeecccceee
Q 020461          206 FLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG-----GQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (326)
Q Consensus       206 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (326)
                      |.++..-..++--|+..|+.+.++..+..++-+.+.|+...-=+..     |-+...+.-+|.|........|..     
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q-----  423 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ-----  423 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee-----
Confidence            4456666678889999999999998888888888888765422221     111122333455443322111111     


Q ss_pred             eccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      .+.+.. ...-.|.+-. ...++|.||.+|.|||++
T Consensus       424 ~kqy~~-k~nFsc~aTT-~sG~IvvgS~~GdIRLYd  457 (644)
T KOG2395|consen  424 SKQYST-KNNFSCFATT-ESGYIVVGSLKGDIRLYD  457 (644)
T ss_pred             cccccc-ccccceeeec-CCceEEEeecCCcEEeeh
Confidence            111111 1123444433 456889999999999964

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.88  E-value=4.6  Score=33.22  Aligned_cols=207  Identities=15%  Similarity=0.114  Sum_probs=102.4

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec--------------cCcccceEEEE--EcCCCCeEEEEeCCC
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--------------RGHNGAVWCCD--VSRDSMTLITGSADQ   74 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~--------------~~h~~~V~~~~--~~~~~~~l~s~~~d~   74 (326)
                      ..|..+..-|+-+.|+.-+ |+.+.++++..-.....-              ......+...+  -...+...+.....+
T Consensus        36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk  114 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK  114 (275)
T ss_pred             ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence            3478888888877766554 599999998765443311              01122333333  112344444455556


Q ss_pred             cEEEEEccCC-----cEEEEEecCCCcceeeeecCCeEEEEEcCccceecee-eeeeeeccCCCCCCCceEEEeccCccc
Q 020461           75 TAKLWNVETG-----AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGR  148 (326)
Q Consensus        75 ~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (326)
                      +|.+|.....     +....+..+..+..+.+. ++.+++.....+..++.. .....+... .... ...........+
T Consensus       115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~~~f~~idl~~~~~~~l~~~-~~~~-~~~~~~~~~~~~  191 (275)
T PF00780_consen  115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-GNKICVGTSKGFYLIDLNTGSPSELLDP-SDSS-SSFKSRNSSSKP  191 (275)
T ss_pred             EEEEEEEECCcccccceeEEEEcCCCcEEEEEe-CCEEEEEeCCceEEEecCCCCceEEeCc-cCCc-chhhhcccCCCc
Confidence            8999987653     344556666677777776 555555544444333221 011111100 0000 000000111122


Q ss_pred             eeEEEEecCCcEEEEeeCCCcEEEEECCCCcccc--ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       149 i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (326)
                      +...... ++.+|++ .++- -...|. .|+..+  .+..    +..+.++++.  ..+|++.+. +.|.+|++.+++++
T Consensus       192 ~~~~~~~-~~e~Ll~-~~~~-g~fv~~-~G~~~r~~~i~W----~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lv  260 (275)
T PF00780_consen  192 LGIFQLS-DNEFLLC-YDNI-GVFVNK-NGEPSRKSTIQW----SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELV  260 (275)
T ss_pred             eEEEEeC-CceEEEE-ecce-EEEEcC-CCCcCcccEEEc----CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEE
Confidence            2222222 2444543 3222 223333 343332  1211    2345566653  357777666 45999999999998


Q ss_pred             EEEeec
Q 020461          227 KTYVTE  232 (326)
Q Consensus       227 ~~~~~~  232 (326)
                      +.+..+
T Consensus       261 Q~i~~~  266 (275)
T PF00780_consen  261 QTIPLP  266 (275)
T ss_pred             EEEECC
Confidence            887643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.80  E-value=0.79  Score=42.15  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=44.2

Q ss_pred             CCcEEEEeeCCCcEEEEECCC----Cccccccc-----------ccc--------CcceeeEEEEEcC----CCCeEEEE
Q 020461          157 LNRTIISAGEDAIVRIWDTET----GKLLKESD-----------KET--------GHKKTITSLAKAA----DGSHFLTG  209 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~----~~~~~~~~-----------~~~--------~h~~~v~~v~~s~----~~~~l~s~  209 (326)
                      +...++.+..||.+...+...    +.......           ...        .-.....+++++.    +..++++-
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            455677778888888777653    11111100           000        0123345555555    67789999


Q ss_pred             eCCCeEEEeecCCcceEEEEe
Q 020461          210 SLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       210 s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      +.|+++|+||+++++++.+..
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEec
Confidence            999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.77  E-value=2.9  Score=37.17  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=56.1

Q ss_pred             eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeee
Q 020461          192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA  270 (326)
Q Consensus       192 ~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  270 (326)
                      -.|..+..++.|+.++-.+.+|.+.++=.+....-..+..+. .++|-.+.- +                         .
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-~-------------------------~  157 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-A-------------------------E  157 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-c-------------------------c
Confidence            456777889999999999999987766433322222222221 122222211 1                         1


Q ss_pred             EeecccceeeeccccccCcceeEEEECCCC---ceEEeecCCCcEEEeecCCCce
Q 020461          271 KFFDKILQEEIGGVKGHFGPINALAFNPDG---KSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~---~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      ++|....          .=++..++|+|++   ..|..=+.|..||+|++....+
T Consensus       158 ~~ftss~----------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  158 RFFTSST----------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             eeeccCC----------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence            1222111          1146789999987   4677778899999998866543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.62  E-value=1.1  Score=35.56  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             EecCCcEEEEeeCCCcEEEEECCCCcccccc---cc-cc-------CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKES---DK-ET-------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~-~~-------~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      +...+.+++.-..+|.+++||+.+++.+..-   .+ ..       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3445778999999999999999988765432   11 11       3456788888898888777665 57789998653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.54  E-value=0.61  Score=25.91  Aligned_cols=30  Identities=20%  Similarity=0.215  Sum_probs=24.7

Q ss_pred             ceeEEEEecCCc---EEEEeeCCCcEEEEECCC
Q 020461          148 RINRAVWGPLNR---TIISAGEDAIVRIWDTET  177 (326)
Q Consensus       148 ~i~~~~~~~~~~---~l~s~~~d~~i~~wd~~~  177 (326)
                      .+.++.|+|...   +|+.+-.-+.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            577899998654   788888889999999985

It contains a characteristic DLL sequence motif.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.47  E-value=4.2  Score=32.27  Aligned_cols=101  Identities=13%  Similarity=0.153  Sum_probs=65.6

Q ss_pred             eEEEEecCCcEE-EEeeCCCcEEEEE--CCCCccc-----cccccccCcc-eeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          150 NRAVWGPLNRTI-ISAGEDAIVRIWD--TETGKLL-----KESDKETGHK-KTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       150 ~~~~~~~~~~~l-~s~~~d~~i~~wd--~~~~~~~-----~~~~~~~~h~-~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      +.++|+.+.+.+ ++-+.+-+|.-||  ..+|...     ..+....... ...-.++++.+|...++.-+.++|...|+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            457788776655 4667788888888  4454332     1121111111 11234455778888888888999999999


Q ss_pred             CCcceEEEEeec-cceEEEEeC-CCCCeeEEe
Q 020461          221 RTLELIKTYVTE-RPVNAVTMS-PLLDHVVLG  250 (326)
Q Consensus       221 ~~~~~~~~~~~~-~~~~~~~~s-~~~~~~~~~  250 (326)
                      .+++.+.++..+ ..+.++||- ++.+.++++
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            999999998654 568888875 444555443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.38  E-value=8.3  Score=34.96  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=26.8

Q ss_pred             CCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461          202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (326)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (326)
                      .+..++.++.||.|+-+|.++++.+-++....
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~  436 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPS  436 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEECCC
Confidence            34678889999999999999999988876543

The alignment model contains an 8-bladed beta-propeller.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.36  E-value=4.2  Score=38.54  Aligned_cols=32  Identities=16%  Similarity=0.134  Sum_probs=26.4

Q ss_pred             CcceeEEEECCC---CceEEeecCCCcEEEeecCC
Q 020461          288 FGPINALAFNPD---GKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       288 ~~~v~~v~~s~d---~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ...|..+.|+|.   +.+|+.=..|+++|+|++..
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            457899999986   47888888899999998854

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.33  E-value=5.8  Score=36.78  Aligned_cols=115  Identities=14%  Similarity=0.290  Sum_probs=58.7

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec--CCCcceeeeec---CCeEEEEEcCccceeceeeeeeeeccCCC
Q 020461           58 CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPA  132 (326)
Q Consensus        58 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (326)
                      +.-+.-++..+.-+....+.+||.+.+..-+...+  ..++..++|..   ++.+.+++-.....+....+.......+.
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            33344444444444445689999998876655555  56777777763   34455554433332222211110111010


Q ss_pred             CCCCceEEEeccC-ccceeEEEEecCCcEEEEeeCCCcEEEEEC
Q 020461          133 DQGGESVLILKGP-QGRINRAVWGPLNRTIISAGEDAIVRIWDT  175 (326)
Q Consensus       133 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~  175 (326)
                      -.....+. +..+ ..+|.+..|-++|..++.+|  +.+.|+|-
T Consensus       115 w~~i~~i~-i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  115 WAPIRKID-ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cceeEEEE-eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            00111111 2233 36788999999887665443  45777774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.19  E-value=5.8  Score=32.68  Aligned_cols=198  Identities=14%  Similarity=0.158  Sum_probs=108.7

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCc-ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      |-+..+.++.|+|+.+.|++..+...-.+|=..+|+.+.++.-. -..-..+++..++++.++-=.++.+-++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            33455899999999999999988888888877888888776421 11224466666676666655677766665544322


Q ss_pred             EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      +....             ..              .+.+..               ....+..---++|+|..+.|..+-+
T Consensus       163 ~~~~~-------------~~--------------~i~L~~---------------~~k~N~GfEGlA~d~~~~~l~~aKE  200 (316)
T COG3204         163 VISAK-------------VQ--------------KIPLGT---------------TNKKNKGFEGLAWDPVDHRLFVAKE  200 (316)
T ss_pred             EEecc-------------ce--------------EEeccc---------------cCCCCcCceeeecCCCCceEEEEEc
Confidence            21110             00              000000               0000222334678888888888877


Q ss_pred             CCcEEEEECCCCccccccccccCcc-------eeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEee-------
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHK-------KTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVT-------  231 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~-------~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------  231 (326)
                      -.=++|+..+.....-.......+.       ..+.++.+.+. +..|+-+-+++.+.--|.. ++.+..+..       
T Consensus       201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL  279 (316)
T COG3204         201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGL  279 (316)
T ss_pred             cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCC
Confidence            7777777665333111111111111       23555666653 5556666667766666654 333333221       


Q ss_pred             ---ccceEEEEeCCCCCeeE
Q 020461          232 ---ERPVNAVTMSPLLDHVV  248 (326)
Q Consensus       232 ---~~~~~~~~~s~~~~~~~  248 (326)
                         .....++++.+++...+
T Consensus       280 ~~dipqaEGiamDd~g~lYI  299 (316)
T COG3204         280 SSDIPQAEGIAMDDDGNLYI  299 (316)
T ss_pred             cccCCCcceeEECCCCCEEE
Confidence               12345666666654433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.79  E-value=0.99  Score=41.50  Aligned_cols=72  Identities=25%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             cCCCEEEeecCCCCeEEEecCC----CCeeee-c----------cC-----------cccceEEEEEcC----CCCeEEE
Q 020461           20 KDGDLLFSCAKDHTPTVWFADN----GERLGT-Y----------RG-----------HNGAVWCCDVSR----DSMTLIT   69 (326)
Q Consensus        20 ~~~~~l~s~~~d~~v~iw~~~~----~~~~~~-~----------~~-----------h~~~V~~~~~~~----~~~~l~s   69 (326)
                      ++...++.+..||.+.......    +..... .          .+           -...+..++++.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666777778888888776553    221111 1          00           123345556655    6679999


Q ss_pred             EeCCCcEEEEEccCCcEEEEEe
Q 020461           70 GSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        70 ~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      -+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999866553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.77  E-value=7.1  Score=32.85  Aligned_cols=144  Identities=15%  Similarity=0.075  Sum_probs=73.0

Q ss_pred             cceeEEEEecCCcEEEEeeC-----------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CCe
Q 020461          147 GRINRAVWGPLNRTIISAGE-----------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKS  214 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg~  214 (326)
                      ...+.....|+|.+.++-..           -|.|...|. .+...+.+   ..+-..-+.++||||++.|..+.. .+.
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~---~~~~~~~NGla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL---DDDLTIPNGLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee---cCcEEecCceEECCCCCEEEEEeCCCCe
Confidence            45667788888876654333           122434443 33333322   233455678999999987776655 477


Q ss_pred             EEEeecCC--cceEE---EEe---eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc
Q 020461          215 AKLWDART--LELIK---TYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG  286 (326)
Q Consensus       215 i~iwd~~~--~~~~~---~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  286 (326)
                      |.-+++..  +..-.   .+.   .......++...++..-+ ++..++..+            ..|+.. ++++..+.-
T Consensus       187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~~v------------~~~~pd-G~l~~~i~l  252 (307)
T COG3386         187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGGRV------------VRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCceE------------EEECCC-CcEEEEEEC
Confidence            77776642  11111   011   123445556655554432 222222122            222322 333333444


Q ss_pred             cCcceeEEEE-CCCCceEEeecC
Q 020461          287 HFGPINALAF-NPDGKSFSSGGE  308 (326)
Q Consensus       287 h~~~v~~v~~-s~d~~~lat~s~  308 (326)
                      ....+.+++| .|+.+.|...+.
T Consensus       253 P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         253 PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCCCccceEeCCCcCEEEEEec
Confidence            4467888888 466665544433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.66  E-value=5.3  Score=35.07  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=57.3

Q ss_pred             eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCccee-eEEEE-------------EcCCCC--e
Q 020461          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLA-------------KAADGS--H  205 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~-v~~v~-------------~s~~~~--~  205 (326)
                      +......+.++..+|.+++.++..+=|+|.++|+.++..++....-..-+-. +....             ..+...  +
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            3444556788999999999999888899999999987766543321110000 00000             000011  2


Q ss_pred             EEEEeCCCeEEEeecCCcceEEEEee
Q 020461          206 FLTGSLDKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       206 l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (326)
                      ++-+-.-|.|-+|.++++..+..+..
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEe
Confidence            44566789999999999988777654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.46  E-value=14  Score=35.56  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeeccCcccceE-------------EEEEcC--CCCeEEEEeC----------CCcE
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-------------CCDVSR--DSMTLITGSA----------DQTA   76 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~-------------~~~~~~--~~~~l~s~~~----------d~~i   76 (326)
                      +.+++.++.|+.+.=.|.++|+.+-.|.. .+.|.             .+.-.|  .+..++.++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            34777788899988889999988765532 22220             111112  1335555543          6889


Q ss_pred             EEEEccCCcEEEEEec
Q 020461           77 KLWNVETGAQLFTFNF   92 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~   92 (326)
                      +-+|.++|+.+..+..
T Consensus       339 ~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       339 RAFDVNTGALVWAWDP  354 (764)
T ss_pred             EEEECCCCcEeeEEec
Confidence            9999999999887754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.36  E-value=2.6  Score=33.47  Aligned_cols=64  Identities=13%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             EccCCCEEEeecCCCCeEEEecCCCCeeeec-------c-------CcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461           18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------R-------GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus        18 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-------~-------~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +..++++|++-..+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|....|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4567889999999999999999988764321       1       2344566677776666555443 3555666643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.32  E-value=0.45  Score=44.77  Aligned_cols=67  Identities=12%  Similarity=0.147  Sum_probs=45.4

Q ss_pred             eEEEEcc---CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEE-----------EcCCCCeEEEEeCCCcEEEE
Q 020461           14 TYLKYNK---DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-----------VSRDSMTLITGSADQTAKLW   79 (326)
Q Consensus        14 ~~~~~s~---~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~-----------~~~~~~~l~s~~~d~~i~~w   79 (326)
                      .-+.|.|   +.-++-.+-.++++++-+..+... ..+++|...+..++           .+|||..|++++.||.++.|
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            3444443   444555566778888876554433 55677876655443           58899999999999999988


Q ss_pred             Ec
Q 020461           80 NV   81 (326)
Q Consensus        80 d~   81 (326)
                      .+
T Consensus       263 Qi  264 (1283)
T KOG1916|consen  263 QI  264 (1283)
T ss_pred             ee
Confidence            75

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.26  E-value=11  Score=32.59  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=51.2

Q ss_pred             eeEEEEecCCcEEEEee-----------CCC-cEEEEECCC--CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCe
Q 020461          149 INRAVWGPLNRTIISAG-----------EDA-IVRIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (326)
Q Consensus       149 i~~~~~~~~~~~l~s~~-----------~d~-~i~~wd~~~--~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~  214 (326)
                      ...++|.++|+++++-.           ..+ .|.+++-.+  ++..+. ..........+.+++.+++ .++ ++....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~-~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS-NVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee-EEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            44577888888766642           223 677776542  332111 1111112345788888888 444 444443


Q ss_pred             EEEeecCC-------cceEEE-Eee-----ccceEEEEeCCCCCeeEEec
Q 020461          215 AKLWDART-------LELIKT-YVT-----ERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       215 i~iwd~~~-------~~~~~~-~~~-----~~~~~~~~~s~~~~~~~~~~  251 (326)
                      .++.|...       .+.+.+ +..     ....+.+.+.|++...+..+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            34445431       112212 221     13367889999886544444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.25  E-value=17  Score=34.39  Aligned_cols=109  Identities=10%  Similarity=0.076  Sum_probs=61.1

Q ss_pred             EEcCCCCeEEEEeCCCeEEEeecCCc--------------------ceEEEEeeccceEEEEeC--CCCCeeEEecCCCc
Q 020461          198 AKAADGSHFLTGSLDKSAKLWDARTL--------------------ELIKTYVTERPVNAVTMS--PLLDHVVLGGGQDA  255 (326)
Q Consensus       198 ~~s~~~~~l~s~s~dg~i~iwd~~~~--------------------~~~~~~~~~~~~~~~~~s--~~~~~~~~~~~~~~  255 (326)
                      ..-.+...|+.+..||.|.+|.+++-                    ++...+..+....+++++  .....++++.....
T Consensus       109 ~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~  188 (717)
T PF08728_consen  109 GDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQE  188 (717)
T ss_pred             cccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCce
Confidence            33456667999999999999965321                    011222234456777777  44444444433333


Q ss_pred             ceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC---c---eEEeecCCCcEEEeec
Q 020461          256 SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG---K---SFSSGGEDGYVRLHHF  317 (326)
Q Consensus       256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~---~---~lat~s~Dg~i~l~~~  317 (326)
                      ..+..+.....    +....       .-..|...|-+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       189 VTVFaf~l~~~----r~~~~-------~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  189 VTVFAFALVDE----RFYHV-------PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEEecccc----ccccc-------cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            33322221100    00000       011255578999996643   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=90.00  E-value=9.2  Score=31.06  Aligned_cols=204  Identities=14%  Similarity=0.161  Sum_probs=92.6

Q ss_pred             eccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461           47 TYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (326)
Q Consensus        47 ~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (326)
                      .+.+-...+..++|.|+.+ ++++....+.|--.+. +|+.+..+.+...                              
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~------------------------------   64 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF------------------------------   64 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-------------------------------
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC------------------------------
Confidence            3455555699999999866 4555556676655564 3555544433210                              


Q ss_pred             eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc-c-----cccc--cccCcceeeEEE
Q 020461          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-L-----KESD--KETGHKKTITSL  197 (326)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~-----~~~~--~~~~h~~~v~~v  197 (326)
                                           +-.-.+++-.++.++++--.++.+.++++..... +     ..+.  ....+...+-.+
T Consensus        65 ---------------------~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGl  123 (248)
T PF06977_consen   65 ---------------------GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGL  123 (248)
T ss_dssp             ---------------------SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEE
T ss_pred             ---------------------CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEE
Confidence                                 0011122333344445444466676666632111 0     1111  111244557899


Q ss_pred             EEcCCCCeEEEEeCCCeEEEeecCC---cceEEEEe---------eccceEEEEeCCCCCeeEEecCCCcceeEeecccC
Q 020461          198 AKAADGSHFLTGSLDKSAKLWDART---LELIKTYV---------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA  265 (326)
Q Consensus       198 ~~s~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~---------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~  265 (326)
                      +|++.+..|+.+-...-.+++.++.   ...+....         ....+.+++++|..+++++-+......+ ..| +.
T Consensus       124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~-~~d-~~  201 (248)
T PF06977_consen  124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL-ELD-RQ  201 (248)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE-EE--TT
T ss_pred             EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE-EEC-CC
Confidence            9999988888888877777776654   22211111         1235788999998888776655444333 333 22


Q ss_pred             ceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461          266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG  307 (326)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s  307 (326)
                      +.. +..+....+  .+++...-..-..|+|.++|.+.+++=
T Consensus       202 G~~-~~~~~L~~g--~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  202 GRV-VSSLSLDRG--FHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             --E-EEEEE-STT--GGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             CCE-EEEEEeCCc--ccCcccccCCccEEEECCCCCEEEEcC
Confidence            221 111111110  011111223457799999997766543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.66  E-value=10  Score=30.99  Aligned_cols=151  Identities=11%  Similarity=0.052  Sum_probs=80.6

Q ss_pred             ceeEEEEecCCcEEEEee---CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee-cCCc
Q 020461          148 RINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ARTL  223 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd-~~~~  223 (326)
                      .+.+.++++++..++...   ....+.++...  .......  .  ...++.-.|++++...+....+...+++. ..++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec--c--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            467788999998766544   33345555433  2222221  1  23567778999987766666666666663 3333


Q ss_pred             ceEEE-Eee--cc-ceEEEEeCCCCCeeEEecC---CCcceeEee-cccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461          224 ELIKT-YVT--ER-PVNAVTMSPLLDHVVLGGG---QDASAVTTT-DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (326)
Q Consensus       224 ~~~~~-~~~--~~-~~~~~~~s~~~~~~~~~~~---~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  295 (326)
                      +.... ...  .. .|..+.+||++..+++...   .....+... ....+ ....     ..............+.+++
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~-----l~~~~~~~~~~~~~v~~v~  172 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRR-----LTGPRRVAPPLLSDVTDVA  172 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-Ccce-----eccceEecccccCcceeee
Confidence            32221 111  12 7899999999999876541   122222211 00111 0000     0111111222345789999


Q ss_pred             ECCCCceEEeecCCC
Q 020461          296 FNPDGKSFSSGGEDG  310 (326)
Q Consensus       296 ~s~d~~~lat~s~Dg  310 (326)
                      |.+++.+++.+...+
T Consensus       173 W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  173 WSDDSTLVVLGRSAG  187 (253)
T ss_pred             ecCCCEEEEEeCCCC
Confidence            999998866555433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.33  E-value=2  Score=37.45  Aligned_cols=172  Identities=15%  Similarity=0.215  Sum_probs=83.7

Q ss_pred             EEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccc-c-ccccC-cceeeE-EEEEcCCCCeEEEEeCCCeE
Q 020461          140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-S-DKETG-HKKTIT-SLAKAADGSHFLTGSLDKSA  215 (326)
Q Consensus       140 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~-~~~~~-h~~~v~-~v~~s~~~~~l~s~s~dg~i  215 (326)
                      ..+....+.+..+-..|+++.++.-+. ..+.++++.+...... + ....+ -...|+ ++..-..|..++.+..||.|
T Consensus       214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v  292 (733)
T COG4590         214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV  292 (733)
T ss_pred             hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence            334455566778889999997765544 6788888865543221 1 10011 012233 22234566778999999998


Q ss_pred             EEe-ecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE
Q 020461          216 KLW-DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (326)
Q Consensus       216 ~iw-d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  294 (326)
                      .-| |.+.... ..+.   .++...+.|.....+..-....... ..+ +.+... .++.......+  ...-...+.-+
T Consensus       293 sQWFdvr~~~~-p~l~---h~R~f~l~pa~~~~l~pe~~rkgF~-~l~-~~G~L~-~f~st~~~~lL--~~~~~~~~~~~  363 (733)
T COG4590         293 SQWFDVRRDGQ-PHLN---HIRNFKLAPAEVQFLLPETNRKGFY-SLY-RNGTLQ-SFYSTSEKLLL--FERAYQAPQLV  363 (733)
T ss_pred             eeeeeeecCCC-Ccce---eeeccccCcccceeeccccccceEE-EEc-CCCcee-eeecccCccee--hhhhhcCccee
Confidence            777 5543222 1111   1222223322222221111111111 111 111111 11111111111  01111245669


Q ss_pred             EECCCCceEEeecCCCcEEEeecCCCce
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      ++||.+.+|++- ..|.|+++++++-+=
T Consensus       364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         364 AMSPNQAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             eeCcccchheee-cCCceEEEEecCCCC
Confidence            999999999854 368899999887653

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.21  E-value=4.8  Score=26.70  Aligned_cols=44  Identities=23%  Similarity=0.131  Sum_probs=30.2

Q ss_pred             EEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461          207 LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       207 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  250 (326)
                      +.+..+|.+.-||+.+++..--...-.-.++++++++++.++++
T Consensus        31 le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   31 LEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             HHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred             ecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence            33445688999999998764444444578999999999988775

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.11  E-value=4  Score=35.74  Aligned_cols=150  Identities=12%  Similarity=0.179  Sum_probs=81.1

Q ss_pred             EEEEccCCCEEEeecCCCCeEEEecCC--CC-eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461           15 YLKYNKDGDLLFSCAKDHTPTVWFADN--GE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~--~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      .+=|+-..+.|++. ..|-+.=|..+.  .. .+.......++|.++.||+|.+.++.--.|.+|.+++....+......
T Consensus        27 gvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   27 GVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             ceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            34444434444332 223444454432  22 333334567899999999999999999999999999985443322221


Q ss_pred             cC-----CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe-e
Q 020461           92 FD-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-G  165 (326)
Q Consensus        92 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  165 (326)
                      ..     ..+.++.|.....++.+...       .+.+.....     ....++..+.|.-.|++..|.++.+.++-+ +
T Consensus       106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~-------G~e~y~v~p-----ekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSSTEIAFITDQ-------GIEFYQVLP-----EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             HHhccCcceeEEEEEecCeeEEEEecC-------CeEEEEEch-----hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            11     12344455554444443322       122211111     112344456778889999999987754432 2


Q ss_pred             -CCCcEEEEECCC
Q 020461          166 -EDAIVRIWDTET  177 (326)
Q Consensus       166 -~d~~i~~wd~~~  177 (326)
                       ..+++.-+-+++
T Consensus       174 ~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  174 VLENVLNPFHFRA  186 (657)
T ss_pred             ccccccccEEEee
Confidence             444444444443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.68  E-value=12  Score=30.43  Aligned_cols=108  Identities=12%  Similarity=0.053  Sum_probs=56.2

Q ss_pred             CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461           64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (326)
Q Consensus        64 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (326)
                      ..+++.||..+.++--|.++|...........+-+.....++.+++.+-..      ...+...      .+|..+..+.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g------~lYfl~~------~tGs~~w~f~   90 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSG------GLYFLCV------KTGSQIWNFV   90 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccC------cEEEEEe------cchhheeeee
Confidence            346677777777777788777765543333222222233444443332211      1111111      0111111111


Q ss_pred             cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccc
Q 020461          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE  183 (326)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  183 (326)
                      ....--.+....++++.+..|+.|+.....|.++..++..
T Consensus        91 ~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   91 ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            1111111244577889999999999999999988766543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.32  E-value=4.5  Score=30.75  Aligned_cols=31  Identities=16%  Similarity=0.189  Sum_probs=25.4

Q ss_pred             cceeEEEECCCC------ceEEeecCCCcEEEeecCC
Q 020461          289 GPINALAFNPDG------KSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       289 ~~v~~v~~s~d~------~~lat~s~Dg~i~l~~~~~  319 (326)
                      +.|.+++|||-|      .+||+-+.+|.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999943      4699999999999987653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.26  E-value=11  Score=29.55  Aligned_cols=79  Identities=14%  Similarity=0.102  Sum_probs=44.1

Q ss_pred             CCCEEEeecC--CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCcEEEEEccCCcEEEEEecCCCcc
Q 020461           21 DGDLLFSCAK--DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPAR   97 (326)
Q Consensus        21 ~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~   97 (326)
                      +|.++.+.+.  ...|++|++.+|+.+..-+--...+..=-...-+..+. -.-.||....+|..+-+++-.+.+++...
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            4677777774  56788999998876543322112222111111122222 23356777788888877776666655444


Q ss_pred             ee
Q 020461           98 SV   99 (326)
Q Consensus        98 ~~   99 (326)
                      .+
T Consensus       135 gL  136 (262)
T COG3823         135 GL  136 (262)
T ss_pred             ee
Confidence            43

>PHA02713 hypothetical protein; Provisional

Probab=88.17  E-value=22  Score=32.96  Aligned_cols=51  Identities=18%  Similarity=0.142  Sum_probs=26.0

Q ss_pred             CeEEEecCCCCeee--eccCcccceEEEEEcCCCCeEEEEeCC------CcEEEEEccCCc
Q 020461           33 TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGA   85 (326)
Q Consensus        33 ~v~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~   85 (326)
                      .+..||..+++...  .+...... .+++. .++...+.||.+      ..+..||+.+++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~  331 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKI  331 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence            46677877765432  22211111 12222 356667777754      346677877653

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.84  E-value=14  Score=36.40  Aligned_cols=97  Identities=16%  Similarity=0.167  Sum_probs=62.8

Q ss_pred             eEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461          150 NRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (326)
Q Consensus       150 ~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (326)
                      .++.|+|.-. ..+....|+.|++..++......  .. ..-....++++|+|.|+.++.|-..|++.-|... .+....
T Consensus       159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v--~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~  234 (1405)
T KOG3630|consen  159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV--TS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSE  234 (1405)
T ss_pred             ccccccCCccchhhhhccccchhhhhhhhhhhhh--cc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeec
Confidence            3455666543 45677889999888765322211  11 1234678999999999999999999999988764 233233


Q ss_pred             Eee-----ccceEEEEeCCCCCeeEEe
Q 020461          229 YVT-----ERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       229 ~~~-----~~~~~~~~~s~~~~~~~~~  250 (326)
                      +..     ...+.+++|-.....+++-
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEe
Confidence            221     2457788887666665543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.80  E-value=5.2  Score=37.98  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=50.6

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecC----------CCCee---eec--------cCcccceEEEEEcCC---CCeE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFAD----------NGERL---GTY--------RGHNGAVWCCDVSRD---SMTL   67 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~----------~~~~~---~~~--------~~h~~~V~~~~~~~~---~~~l   67 (326)
                      .|..+.++|+|.+|+-.|..+...+ .+.          .|...   +++        ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4788999999999998888655444 332          11111   111        134457889999996   4688


Q ss_pred             EEEeCCCcEEEEEccCC
Q 020461           68 ITGSADQTAKLWNVETG   84 (326)
Q Consensus        68 ~s~~~d~~i~~wd~~~~   84 (326)
                      +.=..|+++|+||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            88899999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=87.54  E-value=24  Score=32.77  Aligned_cols=144  Identities=17%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             CCcEEEEeeCCC-----cEEEEECCCCccccccccccCcceeeEE-EEEcCCCCeEEEEeCCC------eEEEeecCCcc
Q 020461          157 LNRTIISAGEDA-----IVRIWDTETGKLLKESDKETGHKKTITS-LAKAADGSHFLTGSLDK------SAKLWDARTLE  224 (326)
Q Consensus       157 ~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~~~l~s~s~dg------~i~iwd~~~~~  224 (326)
                      .|...+.||.||     ++..||..+.+... +....   ..... -...-+|...+.|+.|+      ++..||..+..
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~-va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP-VAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccc-cCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            456778899887     48888887654422 11111   11111 12234567777887654      46778877654


Q ss_pred             eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce--eeeccccccCcceeEEEECCCCce
Q 020461          225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGGVKGHFGPINALAFNPDGKS  302 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~d~~~  302 (326)
                      -...-.....-.........+.+++.||.++...        ...++.|+..+.  ..+..+......+..++.  +++.
T Consensus       456 W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~--------~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~l  525 (571)
T KOG4441|consen  456 WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA--------LSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKL  525 (571)
T ss_pred             eeecCCcccccccceEEEECCEEEEECCccCCCc--------cceEEEEcCCCCceeEcccCccccccccEEEE--CCEE
Confidence            3222111222222223333455666666554110        001233332221  112223333333434444  4788


Q ss_pred             EEeecCCCcEEE
Q 020461          303 FSSGGEDGYVRL  314 (326)
Q Consensus       303 lat~s~Dg~i~l  314 (326)
                      .+.|+.||.-++
T Consensus       526 y~vGG~~~~~~l  537 (571)
T KOG4441|consen  526 YAVGGFDGNNNL  537 (571)
T ss_pred             EEEecccCcccc
Confidence            889998875544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.16  E-value=9.6  Score=34.05  Aligned_cols=60  Identities=22%  Similarity=0.251  Sum_probs=43.7

Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      ..+++.||..|.|++||.-.. ..++.  ..+-...|..+..+.+|..+++.+. .++.+-|++
T Consensus       573 sGyIa~as~kGDirLyDRig~-rAKta--lP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGK-RAKTA--LPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             CceEEEecCCCceeeehhhcc-hhhhc--CcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            468999999999999996422 22222  2345678999999999998888775 467777754

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.63  E-value=2.3  Score=22.85  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=18.4

Q ss_pred             cceeEEEECCCCceEEeecC-C--CcEEEe
Q 020461          289 GPINALAFNPDGKSFSSGGE-D--GYVRLH  315 (326)
Q Consensus       289 ~~v~~v~~s~d~~~lat~s~-D--g~i~l~  315 (326)
                      +.-...+|||||+.|+-++. +  |.-.||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            45678999999998766654 4  566665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.17  E-value=27  Score=32.05  Aligned_cols=69  Identities=25%  Similarity=0.273  Sum_probs=41.0

Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcc--eeeEEEEEcCCCCeEEEEe------CCCeEEEeecCCcceEEEEe
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGS------LDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~  230 (326)
                      .++.++.|+.+.-.|.++|+.+-..... .+.  ..+++--.-.++ .++.++      .+|.|.-+|.++++.+-++.
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            4666778888999999888876443211 111  111111000133 455543      26889999999998877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA03098 kelch-like protein; Provisional

Probab=85.92  E-value=28  Score=31.96  Aligned_cols=64  Identities=6%  Similarity=-0.002  Sum_probs=33.2

Q ss_pred             cCCCEEEeecCCC------CeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEEEccCCc
Q 020461           20 KDGDLLFSCAKDH------TPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGA   85 (326)
Q Consensus        20 ~~~~~l~s~~~d~------~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~   85 (326)
                      .++.+++.||.++      .+..||..+.+....  +.........+.  -+++..+.||.+     ..+..||+.+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            4456666666543      466778777665321  111111111222  256667777765     346677876653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.96  E-value=21  Score=29.60  Aligned_cols=106  Identities=10%  Similarity=0.197  Sum_probs=72.1

Q ss_pred             cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (326)
                      |-...+..+.|+|+.+.|++..+...-.+|=...|+.++.+... + -...-.+.+..++.+.++-=.++.+.++.+...
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            33455888999999999988888887777766778887765432 2 123456778888888777777888888876554


Q ss_pred             ceEEEE-----ee------ccceEEEEeCCCCCeeEEec
Q 020461          224 ELIKTY-----VT------ERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       224 ~~~~~~-----~~------~~~~~~~~~s~~~~~~~~~~  251 (326)
                      ..+...     ..      ..-..++++.|....++++-
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK  199 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK  199 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE
Confidence            222221     11      22356788888887777653

>PRK13684 Ycf48-like protein; Provisional

Probab=84.87  E-value=24  Score=30.20  Aligned_cols=158  Identities=8%  Similarity=0.046  Sum_probs=0.0

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      ...+..+.+.|++.+++.+..-...+.++-........-..-...+.++.+.++++.++.+.. |.+++=..+.++....
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDLESWSK  250 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCCCcccc


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  169 (326)
                      ...+......                                                .+..+.+.|++. ++.++.+|.
T Consensus       251 ~~~~~~~~~~------------------------------------------------~l~~v~~~~~~~-~~~~G~~G~  281 (334)
T PRK13684        251 PIIPEITNGY------------------------------------------------GYLDLAYRTPGE-IWAGGGNGT  281 (334)
T ss_pred             ccCCcccccc------------------------------------------------ceeeEEEcCCCC-EEEEcCCCe


Q ss_pred             EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd  219 (326)
                      |. .....++..........-......+.+..++..+++|.. |.|.-|+
T Consensus       282 v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-G~il~~~  329 (334)
T PRK13684        282 LL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR-GVLLRYV  329 (334)
T ss_pred             EE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC-ceEEEec

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.36  E-value=29  Score=31.35  Aligned_cols=35  Identities=20%  Similarity=0.452  Sum_probs=26.4

Q ss_pred             ceeEEEEecCC---cEEEEeeCCCcEEEEECCCCcccc
Q 020461          148 RINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLK  182 (326)
Q Consensus       148 ~i~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~  182 (326)
                      .+..++|+|+.   ..+..-.+|.+||+||...-+.+.
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence            35567888875   577888899999999987654443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=84.07  E-value=34  Score=31.41  Aligned_cols=62  Identities=26%  Similarity=0.338  Sum_probs=40.0

Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (326)
                      +.|.-+|+.+++..-........   .-+. ..-.+..++.++.||.++.+|.++++.+-++....
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~---~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~  502 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPL---WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS  502 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCC---CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence            56888888888765433211110   1111 11244567778889999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=83.93  E-value=35  Score=31.33  Aligned_cols=150  Identities=15%  Similarity=0.264  Sum_probs=77.6

Q ss_pred             CceeEEEEccCCCEE-Eeec--CCCCeEEEecCCCCeeeeccCcccceEEEEEcCC----CCeEEEEeCCCcEEEEEcc-
Q 020461           11 RPLTYLKYNKDGDLL-FSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SMTLITGSADQTAKLWNVE-   82 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l-~s~~--~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~s~~~d~~i~~wd~~-   82 (326)
                      .++..++|. ||+.+ ++.-  .+|.++.=   +...+    |.=..|..++|.|-    ..-|++....+.|-+|-+. 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccC---CccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            356777886 56544 3321  12222211   11222    33345788999874    3356666777899999874 


Q ss_pred             ----CCcEEEEE--e----cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461           83 ----TGAQLFTF--N----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (326)
Q Consensus        83 ----~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (326)
                          +++.+...  .    ++--..++-|+|...+.++-+..-..+....+.          .+..+..--...+.|.|.
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~----------d~srVkaDi~~~G~IhCA  161 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHC----------DSSRVKADIKTSGLIHCA  161 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeee----------CCceEEEeccCCceEEEE
Confidence                23332221  1    111234556777666554433221111111110          011222222456789999


Q ss_pred             EEecCCcEEEEe-eCCCcEEEEECCCC
Q 020461          153 VWGPLNRTIISA-GEDAIVRIWDTETG  178 (326)
Q Consensus       153 ~~~~~~~~l~s~-~~d~~i~~wd~~~~  178 (326)
                      +|.+||+.|+.+ |..=.-.+||-...
T Consensus       162 CWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  162 CWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EecCcCCEEEEEeCCeEEEEEecCchh
Confidence            999999877654 33334669996544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.64  E-value=27  Score=29.83  Aligned_cols=59  Identities=12%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccccccc-ccCcceeeEEEEEcCCCCeEEEEeCCCeEE
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~  216 (326)
                      +.+|+..-..+.|...+++....+..... .......+..++..|||.+.++-..+|.|+
T Consensus       271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            45666666667787777764432221111 123445789999999999888888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=83.23  E-value=6.6  Score=31.25  Aligned_cols=48  Identities=13%  Similarity=0.101  Sum_probs=41.7

Q ss_pred             EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcC
Q 020461           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR   62 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~   62 (326)
                      .++...+|++.+++=+.++|...|..+|+.+.+++-.+..|++++|-.
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            344567899999998999999999999999999988899999999964

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.93  E-value=5.6  Score=21.49  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=21.5

Q ss_pred             CCCCeEEEEe-CCCcEEEEEccCCcEEEEEe
Q 020461           62 RDSMTLITGS-ADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        62 ~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~   91 (326)
                      |++++|+++. .+++|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5677666555 57899999998877665554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.92  E-value=20  Score=27.19  Aligned_cols=30  Identities=10%  Similarity=0.329  Sum_probs=25.0

Q ss_pred             cceeEEEEecCC------cEEEEeeCCCcEEEEECC
Q 020461          147 GRINRAVWGPLN------RTIISAGEDAIVRIWDTE  176 (326)
Q Consensus       147 ~~i~~~~~~~~~------~~l~s~~~d~~i~~wd~~  176 (326)
                      +.+..++|||.|      ..|+....++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            478899999964      478899999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=81.76  E-value=37  Score=30.11  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=25.2

Q ss_pred             eeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          192 KTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       192 ~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      ..|.++...+....+++.+.+|.|++|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=81.07  E-value=36  Score=29.53  Aligned_cols=100  Identities=12%  Similarity=0.095  Sum_probs=51.9

Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCC-C----c--cccc-cccc-cCcceeeEEEEEcCCCCeEEEEeCC-----
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTET-G----K--LLKE-SDKE-TGHKKTITSLAKAADGSHFLTGSLD-----  212 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~----~--~~~~-~~~~-~~h~~~v~~v~~s~~~~~l~s~s~d-----  212 (326)
                      .....+++.+++ .++ +......++.|... +    +  .+.+ +... ..+......+.+.|||.+.++-+..     
T Consensus        72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            345667788877 444 44444333445431 1    1  1111 1110 0123457789999998866654421     


Q ss_pred             --------------CeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEE
Q 020461          213 --------------KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       213 --------------g~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~  249 (326)
                                    |.|.-+|..+++. ..+. .......++|++.++..++
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEE
Confidence                          4455556655443 2222 2245678999998766543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=80.21  E-value=5.2  Score=19.75  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=19.5

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEE
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVW   37 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw   37 (326)
                      ...++.+++|+++++=+.++.|+++
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4678888999988888777777654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	326
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-70
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-21
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-16
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-16
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-16
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-07
2h9l_A	329	Wdr5delta23 Length = 329		1e-16
2h9l_A	329	Wdr5delta23 Length = 329		3e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-16
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-16
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-16
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-16
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-16
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-16
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-16
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-16
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-16
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-16
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-16
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-16
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-15
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-15
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-13
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		6e-12
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-12
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-10
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-10
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-10
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-10
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-10
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-10
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-10
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		9e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		9e-10
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-10
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		7e-09
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		8e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		5e-08
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-08
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		5e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		4e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		5e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		8e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		1e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		1e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		5e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		5e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		3e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-04
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		4e-04

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 201/334 (60%), Gaps = 13/334 (3%)
Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           M+ I + GHERPLT +KYNK+GDLLFSC+KD + +VW++ NGERLGT  GH G +W  DV
Sbjct: 23  MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
              +   +TGSAD + KLW+V  G  + T+    P + V+F+      +   D  M+   
Sbjct: 83  DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRI---------NRAVWGPLNRTIISAGEDAIVR 171
           +I++  I RD A    E   + + P  +I           A W    + II+  +D  + 
Sbjct: 143 SINIYEIERDSATH--ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231
            +D       +  D    H+K+I+ +  + D ++F+T S D ++ L D  TL+++K Y T
Sbjct: 201 KYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET 258
Query: 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 291
           + P+N   ++PL + ++LGGGQ+A  VTTT    GKFEA+F+ KI +EEIG V+GHFGP+
Sbjct: 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318
Query: 292 NALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 325
           N +A +P G S++SGGEDG++RLHHF+  YF+ K
Sbjct: 319 NTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 141/312 (45%), Gaps = 38/312 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++ H   +  + ++ DG  + S + D T  +W   NG+ L T  GH+ +VW    S D  
Sbjct: 12  LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 66  TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
           T+ + S D+T KLWN   G  L T     S  R V F+  G  +A  + D  ++L     
Sbjct: 71  TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 124
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
                    ++ G+ +  L G    +    + P  +TI SA +D  V++W+   G+LL+ 
Sbjct: 125 --------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 175
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
               TGH  ++  +A + DG    + S DK+ KLW+ R  +L++T       V  V  SP
Sbjct: 176 ---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 302
             D   +    D   V   +            ++LQ     + GH   +N +AF PDG++
Sbjct: 232 --DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVNGVAFRPDGQT 276
Query: 303 FSSGGEDGYVRL 314
            +S  +D  V+L
Sbjct: 277 IASASDDKTVKL 288

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVT 239
           +KE ++   H  ++  +A + DG    + S DK+ KLW+ R  +L++T       V  V 
Sbjct: 6   VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 64
Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
            SP  D   +    D   V   +            ++LQ     + GH   +  +AF+PD
Sbjct: 65  FSP--DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVRGVAFSPD 109
Query: 300 GKSFSSGGEDGYVRL 314
           G++ +S  +D  V+L
Sbjct: 110 GQTIASASDDKTVKL 124

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 143/322 (44%), Gaps = 56/322 (17%)
Query: 3   PILMKGHE-RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS 61
           P ++KGH+   +T L++   G+ + S + D+T  VW A  G+ L T  GH G VW   + 
Sbjct: 111 PKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM- 167
Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           RD++ +I+GS D+T K+WN ETG  + T +   S  R +                     
Sbjct: 168 RDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH-------------------- 206
Query: 121 AIHVKRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172
            +H KR+     D        + G+ + +L G    +    +    R ++S   D +V++
Sbjct: 207 -LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKV 263
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           WD ET   L       GH   + SL    DG H ++GSLD S ++WD  T   I T    
Sbjct: 264 WDPETETCLHTLQ---GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 292
           + + +     L D++++ G  D S V   D + G+           + + G   H   + 
Sbjct: 319 QSLTS--GMELKDNILVSGNAD-STVKIWDIKTGQ---------CLQTLQGPNKHQSAVT 366
Query: 293 ALAFNPDGKSFSSGGEDGYVRL 314
            L FN +    SS  +DG V+L
Sbjct: 367 CLQFNKNFVITSS--DDGTVKL 386

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 78
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 136
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 137 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           +  L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVA 75
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASA 257
            ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   ++  
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 258 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
                        + +D      +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 134 ------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 78
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 136
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 137 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 139
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 140 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 78  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 189
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 92
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 93  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 150
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 151 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + ++  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 78
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 136
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 137 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 60  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 171
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 74
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 75  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 132
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 133 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 139
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 140 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 66  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 177
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 80
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 81  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 138
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 139 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 81
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 139
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 140 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 62  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 173
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 76
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 77  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 134
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 135 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 75
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 133
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 134 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 57  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 168
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 71
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 72  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 129
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 130 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 75
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 133
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 134 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 54/224 (24%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 83  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++GS D++ ++W+V+TG  L T     PA S              DP     SA+H  
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 180
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           R                    G +           I+S+  D + RIWDT +G+ LK   
Sbjct: 181 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
            +      ++ +  + +G + L  +LD + KLWD    + +KTY
Sbjct: 211 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 95
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 96  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 153
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
              D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 154 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 85  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 196
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 197 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 255 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 297

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 97
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 98  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 155
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
              D + GK             +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 156 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           +  L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVA 75
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASA 257
            ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   ++  
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 258 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
                        + +D      +  +  H  P++A+ FN DG    S   DG  R+
Sbjct: 134 ------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 128/330 (38%), Gaps = 43/330 (13%)
Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           +  ++++ H   + +  +++DG  + SC  D T  V+ A+ GE+L   + H   V CC  
Sbjct: 613 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFM 116
           S D   + T SAD+  K+W+  TG  + T++  S   +            LA  + D F+
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +L           D   +   + +   G    +N   + P +  + S   D  +R+WD  
Sbjct: 733 KL----------WDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 177 TGK----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
           +             L   D     +  +   + +ADG   +  + +K   L+D  T  L+
Sbjct: 781 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLL 839
Query: 227 KTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 284
               T     +     SP     V+   Q    +   D R               ++   
Sbjct: 840 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL--------------KVADC 885
Query: 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
           +GH   ++ + F+PDG SF +  +D  +R+
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 128/330 (38%), Gaps = 43/330 (13%)
Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           +  ++++ H   + +  +++DG  + SC  D T  V+ A+ GE+L   + H   V CC  
Sbjct: 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFM 116
           S D   + T SAD+  K+W+  TG  + T++  S   +            LA  + D F+
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +L           D   +   + +   G    +N   + P +  + S   D  +R+WD  
Sbjct: 726 KL----------WDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 177 TGK----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
           +             L   D     +  +   + +ADG   +  + +K   L+D  T  L+
Sbjct: 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLL 832
Query: 227 KTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 284
               T     +     SP     V+   Q    +   D R               ++   
Sbjct: 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL--------------KVADC 878
Query: 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
           +GH   ++ + F+PDG SF +  +D  +R+
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 126/324 (38%), Gaps = 91/324 (28%)
Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77
           ++ DG  L + A+D    +W  +N + +   +GH   ++  D       L++GS D+T +
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 78  LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
           +W++ TG    T + +    +V  + GD                   K IA         
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDG------------------KYIA--------- 223
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----TGHKKT 193
                    G ++RA                 VR+WD+ETG L++  D E    TGHK +
Sbjct: 224 --------AGSLDRA-----------------VRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWDAR--------------TLELIKTYVTERPVNAVT 239
           + S+    DG   ++GSLD+S KLW+ +              T E+  TY+  +      
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV--TYIGHKDFVLSV 316
Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI------NA 293
            +   D  +L G +D   +             F+DK     +  ++GH   +      N 
Sbjct: 317 ATTQNDEYILSGSKDRGVL-------------FWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 294 LAFNPDGKSFSSGGEDGYVRLHHF 317
            +  P+   F++G  D   R+  +
Sbjct: 364 SSLGPEYNVFATGSGDCKARIWKY 387

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 12  PLTY-LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG 70
           P  Y L  + D  + FSC  D    VW   N   +  ++GH     C D+S D   L TG
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 71  SADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR 129
             D T + W++  G QL   +F S   S+ +   G+ LAV      +E+   +HV +  +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV---LHVNKPDK 258
Query: 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG 189
                    VL LK          +    +  +S G+D ++  W T  G  + +S + + 
Sbjct: 259 YQLHLHESCVLSLK----------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS- 307
Query: 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
              ++ S   + D  + +TGS DK A +++ 
Sbjct: 308 ---SVLSCDISVDDKYIVTGSGDKKATVYEV 335

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 119/309 (38%), Gaps = 60/309 (19%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GH   ++ +  + +G+   S + DH+  +W   NG+    + GH   V     S D+ 
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++G  D   ++WNV+ G  + T +          A  D ++ +   P ++        
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRG--------AHTDWVSCVRFSPSLD-------- 165
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
                                         P+   I+S G D +V++WD  TG+L+ +  
Sbjct: 166 -----------------------------APV---IVSGGWDNLVKVWDLATGRLVTD-- 191
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245
              GH   +TS+  + DGS   +   D  A+LWD    E +       P+N +  SP   
Sbjct: 192 -LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRY 250
Query: 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS 305
            +         A T    R    E K     L  E  G K       ++A++ DG +  S
Sbjct: 251 WMC--------AATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYS 302
Query: 306 GGEDGYVRL 314
           G  D  +R+
Sbjct: 303 GYTDNVIRV 311

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 37/323 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHA 289
Query: 292 NALAFNPDGKSFSSGGEDGYVRL 314
            +LA++ DG++  +G  D  +R+
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRV 312

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 130/332 (39%), Gaps = 26/332 (7%)
Query: 5   LMKGHERPLTYL------KYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------RGH 51
           +++GH   +T +      K N+D  +L S ++D T  +W     E+ G +        GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 52  NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI 110
           N  V    +S+++   I+ S D+T +LW++ TG     F    S   SV F+  D   ++
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQIL 134
Query: 111 TTDPFMEL---NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167
           +     E+   N     K  + +  +       +   P  +    V  P      S G D
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV-QPFAPYFASVGWD 193
Query: 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-I 226
             +++W+T      +       H+  +  L+ + +G +  TG  DK   +WD   L    
Sbjct: 194 GRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249
Query: 227 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 286
           + +     +N +  +P L  V +G  Q                    + I + E  G KG
Sbjct: 250 REFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE--GQKG 307
Query: 287 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318
                 +LA+N  GK   +G  DG +R   F+
Sbjct: 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 37/323 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 121
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 122 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 175 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 232 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 283
Query: 292 NALAFNPDGKSFSSGGEDGYVRL 314
            +LA++ DG++  +G  D  +R+
Sbjct: 284 VSLAWSADGQTLFAGYTDNVIRV 306

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 37/323 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGKSFSSGGEDGYVRL 314
            +LA++ DG++  +G  D  +R+
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRV 312

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRD 63
           + GH+  +  LKY   G +L S + D T  VW    G     + GHN  V C D+   ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64  SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARSVDFA---VGDKLAVITT 112
              ++TGS D T  +W +   + +        +   F +P  +  F     G   +V T 
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
                + ++ +     I  D A    + + IL G   RI   ++    +  ISA  D  +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
           RIWD E G+L+      T     +  L + +D    ++ + D S + WDA       +Y 
Sbjct: 335 RIWDLENGELMYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY- 388
Query: 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268
               ++A+T   + D++++ G ++   +     R+GK 
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNL--RSGKL 424

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 37/323 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGKSFSSGGEDGYVRL 314
            +LA++ DG++  +G  D  +R+
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRV 312

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 37/323 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGKSFSSGGEDGYVRL 314
            +LA++ DG++  +G  D  +R+
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRV 312

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           M GH+  ++ +    +GD + S ++D T  +W    G  + T+ GH   V     ++D  
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 66  TLITGSADQTAKLWNVETG------------AQLFTFNFDSPARSVDFAVGDKLAVITTD 113
            + + S DQT ++W V T              +  ++  +S   S+  A G +    +  
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK-SGK 306
Query: 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
           P   L S    K I       G   ++ L G    +   ++    + I+S  +D  +R+W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
           D +  + +K  +    H+  +TSL       + +TGS+D++ K+W+ R
Sbjct: 366 DYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 39/131 (29%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG----------------------K 179
           L G +  + R ++ P+   ++SA EDA +++WD ETG                      K
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 180 LLKESDKET-----------------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222
           LL     +                  GH   ++S++   +G H ++ S DK+ K+W+ +T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 223 LELIKTYVTER 233
              +KT+   R
Sbjct: 224 GYCVKTFTGHR 234

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 116/278 (41%), Gaps = 26/278 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRD 63
           + GH+  +  LKY   G +L S + D T  VW    G     + GHN  V C D+   ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64  SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARSVDFA---VGDKLAVITT 112
              ++TGS D T  +W +   + +        +   F +P  +  F     G   +V T 
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
                + ++ +     I  D A    + + IL G   RI   ++    +  ISA  D  +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQX--KCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
           RIWD E G+L       T     +  L + +D    ++ + D S + WDA       +Y 
Sbjct: 335 RIWDLENGELXYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY- 388
Query: 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268
               ++A+T   + D++++ G ++   +     R+GK 
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNL--RSGKL 424

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 29/243 (11%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D   +  
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 311
             D   +            K +D   +  +  ++GH   ++   F+P      SG EDG 
Sbjct: 204 ASDDLTI------------KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 312 VRL 314
           +++
Sbjct: 252 LKI 254

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 29/243 (11%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D   +  
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 311
             D   +            K +D   +  +  ++GH   ++   F+P      SG EDG 
Sbjct: 204 ASDDLTI------------KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 312 VRL 314
           +++
Sbjct: 252 LKI 254

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 127/319 (39%), Gaps = 30/319 (9%)
Query: 6   MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
           +KGH   +T +       D++ S ++D T  +W       + G      RGH+  V    
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
           +S D    ++GS D T +LW++ TG     F        SV F+  ++  V  + D  ++
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
           L + + V +              +   P            N  I+S G D +V++W+   
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 204
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
            KL       TG+  T+T    + DGS   +G  D  A LWD    + + T      +NA
Sbjct: 205 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261
Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALA 295
           +  SP  +   L       A T    +    E K     L++E+        P    +LA
Sbjct: 262 LCFSP--NRYWL------CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313
Query: 296 FNPDGKSFSSGGEDGYVRL 314
           ++ DG++  +G  D  VR+
Sbjct: 314 WSADGQTLFAGYTDNLVRV 332

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 127/319 (39%), Gaps = 30/319 (9%)
Query: 6   MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWF-----ADNGERLGTYRGHNGAVWCCD 59
           +KGH   +T +       D++ S ++D T  +W       + G      RGH+  V    
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
           +S D    ++GS D T +LW++ TG     F        SV F+  ++  V  + D  ++
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
           L + + V +              +   P            N  I+S G D +V++W+   
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 181
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
            KL       TG+  T+T    + DGS   +G  D  A LWD    + + T      +NA
Sbjct: 182 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 238
Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALA 295
           +  SP  +   L       A T    +    E K     L++E+        P    +LA
Sbjct: 239 LCFSP--NRYWL------CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 290
Query: 296 FNPDGKSFSSGGEDGYVRL 314
           ++ DG++  +G  D  VR+
Sbjct: 291 WSADGQTLFAGYTDNLVRV 309

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 137/323 (42%), Gaps = 37/323 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K + I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD--IDKKASXIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D  V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    +   T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGKSFSSGGEDGYVRL 314
            +LA++ DG++  +G  D  +R+
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRV 312

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
           +SA  D  +R+WD  TG+  +   +  GHK  + S+      S  ++GS DK+ K+W  +
Sbjct: 81  LSASWDKTLRLWDVATGETYQ---RFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
Query: 222 TLELIKTYVTERPVNAVTMSPLL----DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL 277
              L         V+ V + P      D V +    +   V   +    + EA F     
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFI---- 193
Query: 278 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF 317
                   GH   IN L  +PDG   +S G+DG + L + 
Sbjct: 194 --------GHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D   +  
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-- 201
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 311
                 +T +D        K +D   +  +  ++GH   ++   F+P      SG EDG 
Sbjct: 202 ------ITASD----DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 312 VRL 314
           +++
Sbjct: 252 LKI 254

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
           ++ GH   +  L+Y  D  ++ + + D T  VW  + GE L T   H  AV    +  ++
Sbjct: 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNN 223
Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
             ++T S D++  +W++ +         D   R V   VG + AV   D   +   +   
Sbjct: 224 GMMVTCSKDRSIAVWDMASPT-------DITLRRV--LVGHRAAVNVVDFDDKYIVSASG 274
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            R  +       E V  L G +  I  A     +R ++S   D  +R+WD E G  L+  
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244
           +   GH++ +  +    D    ++G+ D   K+WD     L+       P   + +  L+
Sbjct: 333 E---GHEELVRCI--RFDNKRIVSGAYDGKIKVWD-----LVAALDPRAPAGTLCLRTLV 382
Query: 245 DH 246
           +H
Sbjct: 383 EH 384

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 17/214 (7%)
Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMT 66
           H   L+   +      + + + D T  +W  ++G+ L ++ GH   V C D+  S    T
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 67  LITGSADQTAKLWNVETGAQLFTF-NFDSPARSVD-FAVGDKLAVITTDPFMELNSAIHV 124
            ++G  D+ A +W++ +G  +  F   +S   SV  +  GD  A  + D    L    + 
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL----YD 268
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            R  R+ A    ES++        ++ ++ G   R + +   D  + +WD   G  +   
Sbjct: 269 LRADREVAIYSKESIIF---GASSVDFSLSG---RLLFAGYNDYTINVWDVLKGSRVS-- 320
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
               GH+  +++L  + DG+ F +GS D + ++W
Sbjct: 321 -ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 36/187 (19%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
           I++A  D    +WD E+G+LL +S    G       LA +  G+ F++G  DK A +WD 
Sbjct: 169 ILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 221 RTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK------------ 267
           R+ + ++ + T E  VN+V   P  D      G D +     D RA +            
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGD--AFASGSDDATCRLYDLRADREVAIYSKESIIF 285
Query: 268 --------------------FEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307
                               +    +D +    +  + GH   ++ L  +PDG +F SG 
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Query: 308 EDGYVRL 314
            D  +R+
Sbjct: 346 WDHTLRV 352

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 104/275 (37%), Gaps = 67/275 (24%)
Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV-G 104
           T +GH+G V+  D + +   +++ S D    +WN  T  +        P      FA  G
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRT-II 162
             +A         L+SA  +  ++      G   V  +L G +G  +   + P   T +I
Sbjct: 121 QSVAC------GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 163 SAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWD 219
           +   D    +WD  TG+ +    S+  +GH   + SL+  + + + F++GS D + +LWD
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 220 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE 279
            R        +T R V                                            
Sbjct: 235 LR--------ITSRAVRTY----------------------------------------- 245
Query: 280 EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
                 GH G IN++ F PDG+ F +G +DG  RL
Sbjct: 246 -----HGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            ++WN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D   +  
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-- 201
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY 311
                 +T +D        K +D   +  +  ++GH   ++   F+P      SG EDG 
Sbjct: 202 ------ITASD----DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 312 VRL 314
           +++
Sbjct: 252 LKI 254

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 9/175 (5%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
           ++ +G Q  + +  W P    + SA  DA   IW          +  E GH+  + S+A 
Sbjct: 55  VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAW 113
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT 259
           A  G+   T S DKS  +W+   ++    Y     +N+ T    + HVV    Q+  A  
Sbjct: 114 APSGNLLATCSRDKSVWVWE---VDEEDEYECVSVLNSHTQD--VKHVVWHPSQELLASA 168
Query: 260 TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
           + D     +  +  D +       ++GH   + +LAF+P G+  +S  +D  VR+
Sbjct: 169 SYDDTVKLYREEEDDWVC---CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
             + P    +   G D I  I++ +T +      +E        S  +  D +  +T S 
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
           D +  LWD  T +   T+      V +++++P    + + G  DASA    D R G    
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320
            F             GH   INA+ F P+G +F++G +D   RL     D
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
             + P    +   G D I  I++ +T +      +E        S  +  D +  +T S 
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
           D +  LWD  T +   T+      V +++++P    + + G  DASA    D R G    
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320
            F             GH   INA+ F P+G +F++G +D   RL     D
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
             + P    +   G D I  I++ +T +      +E        S  +  D +  +T S 
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
           D +  LWD  T +   T+      V +++++P    + + G  DASA    D R G    
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320
            F             GH   INA+ F P+G +F++G +D   RL     D
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
             + P    +   G D I  I++ +T +      +E        S  +  D +  +T S 
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
           D +  LWD  T +   T+      V +++++P    + + G  DASA    D R G    
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320
            F             GH   INA+ F P+G +F++G +D   RL     D
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
             + P    +   G D I  I++ +T +      +E        S  +  D +  +T S 
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
           D +  LWD  T +   T+      V +++++P    + + G  DASA    D R G    
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 231
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320
            F             GH   INA+ F P+G +F++G +D   RL     D
Sbjct: 232 TF------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV-SRDS 64
           + GH+  +  L + +DG ++ S + D T  VW    G  +   + HN +VW   V S   
Sbjct: 100 LIGHQGNVCSLSF-QDG-VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSE 155
Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
              +T SAD+T KLW  +   + F+   +   R         LAV+    F+  ++   +
Sbjct: 156 NKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR--------HLAVVDDGHFISCSNDGLI 207
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL 180
           K +     D       +L+  +G  +      L  N  I+S GED  VRIW  E G L
Sbjct: 208 KLVDXHTGD-------VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 38/265 (14%)
Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDK---LAVITTDPFMEL 118
           D+    + S D+T K+W+  T      FNF+    S   + V  K   +AV T  P ++L
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE- 176
                          + G    IL+G +  I    W P    I+ +A  D+ V++WD   
Sbjct: 171 CDL------------KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 177 -TGKLL-------KESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224
            +G L+       K+S       T H   +  L   +DG H LT   D   +LW++   E
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Query: 225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 284
              T V    V   +   L   V  G   +   V      A       +     E+I  +
Sbjct: 279 --NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA------VYTVYSGEQITML 330
Query: 285 KGHFGPINALAFNPDGKSFSSGGED 309
           KGH+  ++   F  + +   SG  D
Sbjct: 331 KGHYKTVDCCVFQSNFQELYSGSRD 355

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL----TGSLDK 213
           + T+++   D +V++W     +L  +   E GH+  + S+    D SH L    + SLD 
Sbjct: 48  SETVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSV----DISHTLPIAASSSLDA 102
Query: 214 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE---- 269
             +LWD    + IK+ +   PV+A T++   D   L  G     V      +GK E    
Sbjct: 103 HIRLWDLENGKQIKS-IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 270 --AKF------------------------FDKILQEEIGGVKGHFGPINALAFNPDGKSF 303
              KF                        FD    + +  ++GH  PI +L F+PD +  
Sbjct: 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 304 SSGGEDGYVRLH 315
            +  +DGY++++
Sbjct: 222 VTASDDGYIKIY 233

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 58  CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
                 S  L TG  ++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F
Sbjct: 297 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 352
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            + N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 353 AQ-NQLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/296 (17%), Positives = 113/296 (38%), Gaps = 29/296 (9%)
Query: 25  LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
           + + A D++  +W A +G+ L   +      +   V+  ++   L  G++    +LW+V+
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 83  TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
              +L      S           ++  ++ + ++ L+S      I           V  L
Sbjct: 189 QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
            G    +    W P  R + S G D +V +W +  G+         T H+  + ++A   
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV 258
             S+ L    G+ D+  ++W+  +   +        V ++  SP    ++ G        
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG-------- 349
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
               H   + +   +      ++  +KGH   + +L  +PDG + +S   D  +RL
Sbjct: 350 ----HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 141 ILKGPQGR----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196
           IL  P+ R    +N   W   N  +++   D  V +W   +G +L+    E    + I+S
Sbjct: 107 ILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQP-GEYISS 163
Query: 197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS 256
           +A   +G++   G+     +LWD +  + ++   +    +A   S   +  +L  G  + 
Sbjct: 164 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH---SARVGSLSWNSYILSSGSRSG 220
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            +   D R           + +  +  + GH   +  L + PDG+  +SGG D  V +
Sbjct: 221 HIHHHDVR-----------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 267

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 58  CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
                 S  L TG  ++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F
Sbjct: 286 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 341
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            + N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 342 AQ-NQLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/296 (17%), Positives = 113/296 (38%), Gaps = 29/296 (9%)
Query: 25  LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
           + + A D++  +W A +G+ L   +      +   V+  ++   L  G++    +LW+V+
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 83  TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
              +L      S           ++  ++ + ++ L+S      I           V  L
Sbjct: 178 QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
            G    +    W P  R + S G D +V +W +  G+         T H+  + ++A   
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV 258
             S+ L    G+ D+  ++W+  +   +        V ++  SP    ++ G        
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG-------- 338
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
               H   + +   +      ++  +KGH   + +L  +PDG + +S   D  +RL
Sbjct: 339 ----HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 141 ILKGPQGR----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196
           IL  P+ R    +N   W   N  +++   D  V +W   +G +L+    E    + I+S
Sbjct: 96  ILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQP-GEYISS 152
Query: 197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS 256
           +A   +G++   G+     +LWD +  + ++   +    +A   S   +  +L  G  + 
Sbjct: 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH---SARVGSLSWNSYILSSGSRSG 209
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            +   D R           + +  +  + GH   +  L + PDG+  +SGG D  V +
Sbjct: 210 HIHHHDVR-----------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 58  CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
                 S  L TG  ++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F
Sbjct: 206 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 261
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            + N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 262 AQ-NQLV----IWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/296 (17%), Positives = 113/296 (38%), Gaps = 29/296 (9%)
Query: 25  LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
           + + A D++  +W A +G+ L   +      +   V+  ++   L  G++    +LW+V+
Sbjct: 38  VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 83  TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
              +L      S           ++  ++ + ++ L+S      I           V  L
Sbjct: 98  QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
            G    +    W P  R + S G D +V +W +  G+         T H+  + ++A   
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV 258
             S+ L    G+ D+  ++W+  +   +        V ++  SP    ++ G        
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG-------- 258
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
               H   + +   +      ++  +KGH   + +L  +PDG + +S   D  +RL
Sbjct: 259 ----HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 141 ILKGPQGR----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196
           IL  P+ R    +N   W   N  +++   D  V +W   +G +L+    E    + I+S
Sbjct: 16  ILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQP-GEYISS 72
Query: 197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS 256
           +A   +G++   G+     +LWD +  + ++   +    +A   S   +  +L  G  + 
Sbjct: 73  VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH---SARVGSLSWNSYILSSGSRSG 129
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            +   D R           + +  +  + GH   +  L + PDG+  +SGG D  V +
Sbjct: 130 HIHHHDVR-----------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
           +S   D  +R+WD   G     + +  GH K + S+A + D    ++ S D++ KLW+  
Sbjct: 446 LSGSWDGELRLWDLAAGV---STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-- 500
Query: 222 TLELIKTYVTERP------VNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD 274
           TL   K  ++E        V+ V  SP  L   ++    D + V   +    K  +    
Sbjct: 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT-VKVWNLSNCKLRST--- 556
Query: 275 KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
                    + GH G ++ +A +PDG   +SGG+DG V L
Sbjct: 557 ---------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
           E V+ L+G   R+    W P  + ++ SAG D ++ +WD  TG  +     +  H  TI 
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
           S+  + DG+   T   DK  ++ + R   ++    + +   RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
           E V+ L+G   R+    W P  + ++ SAG D ++ +WD  TG  +     +  H  TI 
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
           S+  + DG+   T   DK  ++ + R   ++    + +   RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-------GHNGAVWCCDVS 61
           H + +  ++YN DG L  S   D T  ++   +G + G +         H+G+V+    S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 62  RDSMTLITGSADQTAKLWNVET 83
            D   + + SAD+T K+WNV T
Sbjct: 249 PDGTKIASASADKTIKIWNVAT 270

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 154 WGPLNRTIISAGEDAIVRIWD----TETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209
           + P      S G D  + +++    T+TG    +S K   H  ++  L  + DG+   + 
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 210 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269
           S DK+ K+W+  TL++ KT         + +   ++   LG       +  T        
Sbjct: 258 SADKTIKIWNVATLKVEKT---------IPVGTRIEDQQLG-------IIWTKQALVSIS 301
Query: 270 AKFFDKILQEEIGGVK----GHFGPINALAFNPDGKSFSSGGEDGYVR 313
           A  F   +  E+G +     GH   I AL+ + DGK+  S   +G++ 
Sbjct: 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 136 GESVLILKGPQGRINRAVWGPLNRT--------------IISAGEDAIVRIWDT-ETGKL 180
           G S+ + K P+G  N ++     +T              I+ A +   V +W+  E   L
Sbjct: 69  GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL 128
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT 239
           L     +  H   + +L+  +DG+  ++G  D S K+WD     ++K+Y      VN V 
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 240 MSPLLDHVVLGGGQD 254
             P  D + L  G+D
Sbjct: 189 ACPGKDTIFLSCGED 203

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           + H   +T LK+   G+ L S ++D    +W   +G    T  GH   V    +      
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 67  LITGSADQTAKLWNVETGAQLFTFN 91
           +++ S D T +LW   TG  + TFN
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFN 217

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
            I +  + P    +IS+ +D  ++IW  + G     S+  T  GH+ T+T +A    G +
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 192
Query: 206 FLTGSLDKSAKLWDARTLELIKTY 229
            L+ SLD + +LW+  T   I T+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTF 216

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           + H   +T LK+   G+ L S ++D    +W   +G    T  GH   V    +      
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 67  LITGSADQTAKLWNVETGAQLFTFN 91
           +++ S D T +LW   TG  + TFN
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
            I +  + P    +IS+ +D  ++IW  + G     S+  T  GH+ T+T +A    G +
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 195
Query: 206 FLTGSLDKSAKLWDARTLELIKTY 229
            L+ SLD + +LW+  T   I T+
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTF 219

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 21/172 (12%)
Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
           W     +I++  E+  +R+W+ +TG LL   +    H+  I S+    DG+H ++  ++ 
Sbjct: 116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNF---HRAPIVSVKWNKDGTHIISMDVEN 171
Query: 214 SAKLWDARTLELIKTYVTER----PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA---- 265
              LW+  +  +++ +  +      +NA   S        G G     V   D       
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHS--------GDGSLGVDVEWVDDDKFVIP 223
Query: 266 GKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316
           G   A F  +I ++   G + GH GPI+ L FN   K   S  +DG +R+ H
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 12  PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLIT 69
           P++   +NKD   +  C  +H   ++     + +  +  + HNG V   D + DS  ++T
Sbjct: 10  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 70  GSADQTAKLWNVE---TGAQLFTFNFDSPARSV-------DFAVGDKLAVITTDPFMELN 119
              D+ A +W ++       L     +  AR V        FAVG    VI+   F + N
Sbjct: 70  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 120 S---AIHVKRIARDPA---DQGGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAIV 170
                 H+K+  R      D    SVL+  G    + RI  A        I    E    
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY-------IKEVEERPAP 182
Query: 171 RIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
             W ++   G+L+ ES    G    +  +  +A+GS     S D +  L DA     + T
Sbjct: 183 TPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239
Query: 229 YVTER-PVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKF 268
             +E  P+ AVT   + +  ++  G D   V  T D  AGK 
Sbjct: 240 LASETLPLLAVTF--ITESSLVAAGHDCFPVLFTYDSAAGKL 279

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62
           M GH+  +  L +N+   +L S ++    H   V  A++  ++GT +GH+  V       
Sbjct: 172 MAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRS 227
Query: 63  DSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
           D + L +G  D   ++W+  +    FT  N ++  ++V +       + T    M+    
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD---- 283
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGK 179
              K+I    A  G     +  G Q  +   +W P ++ I+S     D  + IW   +  
Sbjct: 284 ---KQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTERPVNA 237
           L K+ D    H   +   A + DG    T + D++ K W     + +K    +T+ P ++
Sbjct: 339 LTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSS 397
Query: 238 VTM 240
           +T+
Sbjct: 398 ITI 400

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 12  PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLIT 69
           P++   +NKD   +  C  +H   ++     + +  +  + HNG V   D + DS  ++T
Sbjct: 10  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 70  GSADQTAKLWNVE---TGAQLFTFNFDSPARSV-------DFAVGDKLAVITTDPFMELN 119
              D+ A +W ++       L     +  AR V        FAVG    VI+   F + N
Sbjct: 70  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 120 S---AIHVKRIARDPA---DQGGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAIV 170
                 H+K+  R      D    SVL+  G    + RI  A        I    E    
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY-------IKEVEERPAP 182
Query: 171 RIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
             W ++   G+L+ ES    G    +  +  +A+GS     S D +  L DA     + T
Sbjct: 183 TPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239
Query: 229 YVTER-PVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKF 268
             +E  P+ AVT   + +  ++  G D   V  T D  AGK 
Sbjct: 240 LASETLPLLAVTF--ITESSLVAAGHDCFPVLFTYDSAAGKL 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.98
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.49
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.33
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.3
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.29
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.15
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.15
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.1
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.04
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.02
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.01
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.99
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.97
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.94
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.93
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.91
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.8
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.77
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.76
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.7
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.69
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.66
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.65
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.61
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.54
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.45
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.42
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.28
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.25
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.18
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.1
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.02
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.01
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.96
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.95
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.93
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.84
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.82
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.77
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.7
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.57
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.55
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.55
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.41
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.4
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.38
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.19
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.17
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.07
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.04
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.88
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.82
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.76
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.65
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.45
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.35
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.32
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.22
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.64
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.3
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.16
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.97
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.65
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.63
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	94.47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.33
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.31
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.47
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.37
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.26
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.23
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.95
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.27
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.23
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.23
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.12
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.94
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.58
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.8
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	88.96
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.74
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	88.46
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.0
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.12
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	83.95
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.1
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	81.75
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.21
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.18

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.4e-46  Score=317.32  Aligned_cols=284  Identities=19%  Similarity=0.343  Sum_probs=240.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+++|.+.|.+++|+|++++|++|+.|++|++||..+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~  128 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             Cc----EEEEE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           84 GA----QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        84 ~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      ++    ....+ .+...+.++.+.+++.++..+.+.      .+.+|++.      .+.....+.+|.+.|.+++|+|++
T Consensus       129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~------~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT------TCALWDIE------TGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             CSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTS------CEEEEETT------TTEEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCcceeEEEecCCCccEEEEEECCCCcEEEEECCC------cEEEEECC------CCcEEEEEcCCCCceEEEEECCCC
Confidence            53    22222 244566777788777766655543      34445442      346777889999999999999999


Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cce
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPV  235 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~  235 (326)
                      +++++|+.|++|++||+++++....+   .+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+...   ..+
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEE---cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence            99999999999999999988776554   478899999999999999999999999999999998888777543   368


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      .+++|+|++..+++++.+.              .+++|+......+..+.+|.++|.+++|+|||.+|||||.||+|+||
T Consensus       274 ~~~~~s~~g~~l~~g~~d~--------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDF--------------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEECTTSSEEEEEETTS--------------EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEECCCCCEEEEECCCC--------------eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            9999999998877765432              34566655556666788999999999999999999999999999999


Q ss_pred             e
Q 020461          316 H  316 (326)
Q Consensus       316 ~  316 (326)
                      +
T Consensus       340 d  340 (340)
T 1got_B          340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5e-46  Score=324.05  Aligned_cols=287  Identities=22%  Similarity=0.304  Sum_probs=243.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|..+|++++|+|++++|++|+.|++|+|||+.+++...++.+|.+.|.+++|+|++++|++|+.|++|++||+.+
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ++.+..+. +...+.++.+.+++..++.+..     +..+.+|++.      .+..+..+.+|...|.++.++|++.+|+
T Consensus       182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-----D~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~g~~l~  250 (410)
T 1vyh_C          182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEVQ------TGYCVKTFTGHREWVRMVRPNQDGTLIA  250 (410)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEETT------TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEeCCCccEEEEEECCCCCEEE
Confidence            88876664 4567788888887655544332     2345555543      3457778899999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC--------------------CCeEEEEeCCCeEEEeecCC
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------------------GSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--------------------~~~l~s~s~dg~i~iwd~~~  222 (326)
                      +|+.|++|++||+++++....+   .+|...|.+++|+|+                    +.+|++|+.|++|++||+++
T Consensus       251 s~s~D~~v~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          251 SCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             EEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEcCCCeEEEEECCCCceeeEe---cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999999988766544   478899999999996                    66899999999999999999


Q ss_pred             cceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461          223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK  301 (326)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~  301 (326)
                      ++++..+. +...+.+++|+|++..+++++. |+             .+++|+....+.+..+.+|...|++++|+|++.
T Consensus       328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~-------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~  393 (410)
T 1vyh_C          328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DK-------------TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP  393 (410)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSCEEEEET-TT-------------EEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred             CceEEEEECCCCcEEEEEEcCCCCEEEEEeC-CC-------------eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCC
Confidence            99988876 4567999999999988776653 32             245666555556667789999999999999999


Q ss_pred             eEEeecCCCcEEEeecC
Q 020461          302 SFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       302 ~lat~s~Dg~i~l~~~~  318 (326)
                      +|||||.||+|+||+++
T Consensus       394 ~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          394 YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEETTSEEEEEC--
T ss_pred             EEEEEeCCCcEEEEeCC
Confidence            99999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-45  Score=314.21  Aligned_cols=320  Identities=41%  Similarity=0.740  Sum_probs=262.8

Q ss_pred             CceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         2 ~~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      ++..+++|...|++++|+|++++|++++.|+.|++|++.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCC-----CCCceEEEeccCcc--ceeEEEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-----QGGESVLILKGPQG--RINRAVW  154 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~i~~~~~  154 (326)
                      .+++.+..+....++.++.+.++...++++..........+.++++......     ........+..|.+  .+.+++|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            9999998888888888999998777666654432222234444544332111     11123444556666  8999999


Q ss_pred             ecCCcEEEEeeCCCcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc
Q 020461          155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (326)
Q Consensus       155 ~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (326)
                      +|+++.|++++.|+.|++||+++ ++....+   ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+....
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  260 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSI---DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC  260 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEE---ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence            99999999999999999999987 4544433   3688899999999999999999999999999999999999998888


Q ss_pred             ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                      .+..++++|++..+++++..+...+...+...+...+++|+....+.+..+.+|.+.|++++|+|++++|++|+.||.|+
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  340 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR  340 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence            99999999999999998877766666666666666788999888888888899999999999999999999999999999


Q ss_pred             EeecCCCceee
Q 020461          314 LHHFDPDYFNI  324 (326)
Q Consensus       314 l~~~~~~~~~~  324 (326)
                      +|+++...+..
T Consensus       341 iw~~~~~~~~~  351 (369)
T 3zwl_B          341 LHHFEKSYFDF  351 (369)
T ss_dssp             EEEECHHHHTC
T ss_pred             EEECccccchh
Confidence            99998876544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=304.78  Aligned_cols=286  Identities=21%  Similarity=0.288  Sum_probs=237.6

Q ss_pred             eeeecCCceeEEEEccC----CCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461            5 LMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~----~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~   78 (326)
                      .+++|.+.|.+++|+|+    +++|++|+.|++|+||+..+++.  ...+.+|...|.+++|++++.++++++.|++|++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l  106 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL  106 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            45689999999999985    67999999999999999887653  4568899999999999999999999999999999


Q ss_pred             EEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           79 WNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        79 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      ||+.+++.+..+.. ...+..+.++++...++.+..     ...+.++.+.      .+.....+..+...|.+++|+|+
T Consensus       107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~~------~~~~~~~~~~~~~~v~~~~~spd  175 (321)
T 3ow8_A          107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGVE------SGKKEYSLDTRGKFILSIAYSPD  175 (321)
T ss_dssp             EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEETT------TCSEEEEEECSSSCEEEEEECTT
T ss_pred             EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEcC------CCceeEEecCCCceEEEEEECCC
Confidence            99999988877654 345667888887776665442     2233444432      23456677788889999999999


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceE
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN  236 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~  236 (326)
                      +++|++|+.|+.|++||+++++.+..+   .+|...|.+++|+|++.+|++|+.|++|++||+++++++..+. +...+.
T Consensus       176 g~~lasg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~  252 (321)
T 3ow8_A          176 GKYLASGAIDGIINIFDIATGKLLHTL---EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL  252 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEE---cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceE
Confidence            999999999999999999998876654   4788999999999999999999999999999999998888775 456799


Q ss_pred             EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      +++|+|++..+++++.+.              .+++|+....+.+..+.+|.+.|++++|+|++++|++++.||+|+||+
T Consensus       253 ~~~~sp~~~~l~s~s~D~--------------~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          253 NVAFCPDDTHFVSSSSDK--------------SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EEEECTTSSEEEEEETTS--------------CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EEEECCCCCEEEEEeCCC--------------cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            999999998877665432              245666666666777889999999999999999999999999999999


Q ss_pred             cC
Q 020461          317 FD  318 (326)
Q Consensus       317 ~~  318 (326)
                      ++
T Consensus       319 ~p  320 (321)
T 3ow8_A          319 CP  320 (321)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7e-44  Score=300.37  Aligned_cols=294  Identities=23%  Similarity=0.356  Sum_probs=232.9

Q ss_pred             eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCC-----CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461            4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADN-----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      ..|++|.+.|.+++|+|++ ++|++|+.|++|++|++.+     +..+..+++|...|.+++|+|++++|++|+.|++|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR   90 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence            4688999999999999965 8999999999999999864     234678899999999999999999999999999999


Q ss_pred             EEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      +||+.+++....+. +..++.++.+.++...++.+..     +..+.+|++.       +..+..+.+|...|.++.++|
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----D~~i~vwd~~-------~~~~~~~~~h~~~v~~~~~~~  158 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-----DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVP  158 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-----TSCEEEEETT-------SCEEEEECCCSSCEEEEEECC
T ss_pred             EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCeEEEEeccCCcEEEEEEcc
Confidence            99999998887765 4567888888887665554432     2234555542       346777889999999999998


Q ss_pred             CC------cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          157 LN------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       157 ~~------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      ..      ..+++++.|++|++||+++++....+   .+|...|.+++++|++.+|++|+.||+|++||+++++++..+.
T Consensus       159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             C------CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            54      48999999999999999887665543   4799999999999999999999999999999999999999988


Q ss_pred             eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC
Q 020461          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG  310 (326)
Q Consensus       231 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg  310 (326)
                      ....+.+++|+|++..++++.. ++..  .++......    ..............|...+.+++|+|||++|++|+.||
T Consensus       236 ~~~~v~~~~~sp~~~~la~~~~-~~i~--v~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          236 AQDEVFSLAFSPNRYWLAAATA-TGIK--VFSLDPQYL----VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             CCSCEEEEEECSSSSEEEEEET-TEEE--EEEETTEEE----EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCcEEEEEEcCCCCEEEEEcC-CCcE--EEEeCcCee----eeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            8888999999999887766543 2222  222111111    00001111112235677899999999999999999999


Q ss_pred             cEEEeecCC
Q 020461          311 YVRLHHFDP  319 (326)
Q Consensus       311 ~i~l~~~~~  319 (326)
                      +|+||++..
T Consensus       309 ~i~vWd~~t  317 (319)
T 3frx_A          309 VIRVWQVMT  317 (319)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEee
Confidence            999999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1e-43  Score=303.59  Aligned_cols=284  Identities=19%  Similarity=0.280  Sum_probs=234.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+++|...|.+++|+|++++|++|+.|++|++||..+++....+..|...|.+++|+|+++++++++.|+++++|++..
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             Cc-------EEEEEecCCCcceeeeecCCeEEE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           84 GA-------QLFTFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        84 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      ..       ......+...+..+.|.+++..++ ++.+      ..+.+|++.      .+..+..+.+|...|.++.++
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D------~~v~lwd~~------~~~~~~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD------GTCALWDVE------SGQLLQSFHGHGADVLCLDLA  205 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT------SEEEEEETT------TCCEEEEEECCSSCEEEEEEC
T ss_pred             cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC------CcEEEEeCC------CCeEEEEEcCCCCCeEEEEEE
Confidence            31       111223455667777887665443 3333      345555543      346778889999999999998


Q ss_pred             cC--CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-
Q 020461          156 PL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-  232 (326)
Q Consensus       156 ~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-  232 (326)
                      |.  +..|++|+.|++|++||+++++++..+   .+|...|.+++|+|++.+|++|+.|++|++||+++.+.+..+... 
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~  282 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES  282 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            74  679999999999999999998876654   478999999999999999999999999999999998877666433 


Q ss_pred             --cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCC
Q 020461          233 --RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG  310 (326)
Q Consensus       233 --~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg  310 (326)
                        ..+.+++|+|++..+++++.+.              .+++|+...++.+..+.+|.++|++++|+|||++||+|+.||
T Consensus       283 ~~~~~~~~~~s~~g~~l~~g~~d~--------------~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          283 IIFGASSVDFSLSGRLLFAGYNDY--------------TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTS--------------CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             cccceeEEEEeCCCCEEEEEECCC--------------cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence              3578999999998877665432              245566555556667789999999999999999999999999


Q ss_pred             cEEEee
Q 020461          311 YVRLHH  316 (326)
Q Consensus       311 ~i~l~~  316 (326)
                      +|+||+
T Consensus       349 ~v~vW~  354 (354)
T 2pbi_B          349 TLRVWA  354 (354)
T ss_dssp             EEEEEC
T ss_pred             CEEecC
Confidence            999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.4e-44  Score=310.45  Aligned_cols=288  Identities=22%  Similarity=0.339  Sum_probs=225.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..|++|.+.|++++|+|++++|++|+.|++|+|||..+++....+++|...|.+++|+|++++|++|+.|+++++||+.+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~  139 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS  139 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CcE-------EEEE-ecCCCcceeeeecCC--eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe-----ccCccc
Q 020461           84 GAQ-------LFTF-NFDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-----KGPQGR  148 (326)
Q Consensus        84 ~~~-------~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  148 (326)
                      ...       ...+ .+...+.++.+.+.+  .++.++.+.      .+.+|++.      .+..+..+     .+|...
T Consensus       140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~------~i~~wd~~------~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ------TCVLWDVT------TGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTS------CEEEECTT------TCCEEEEECCCSSSSCCSC
T ss_pred             CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCC------cEEEEEcC------CCcEEEEeecccCCCCccC
Confidence            321       1111 223445556666542  344433333      34445442      23344444     578899


Q ss_pred             eeEEEEec-CCcEEEEeeCCCcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461          149 INRAVWGP-LNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       149 i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (326)
                      |.++.++| ++.+|++|+.|++|++||++. ++.+..   ..+|...|.+++|+|++.+|++|+.|++|++||+++++++
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT---YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE---ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE---ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence            99999987 778999999999999999974 344433   3479999999999999999999999999999999999988


Q ss_pred             EEEeec--------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc----ccccCcceeEE
Q 020461          227 KTYVTE--------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG----VKGHFGPINAL  294 (326)
Q Consensus       227 ~~~~~~--------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~v  294 (326)
                      ..+...        ..+.+++|+|++..+++++.++.              +++|+....+.+..    ..+|.+.|+++
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~--------------i~vwd~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD--------------CYVWDTLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC--------------EEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEECCCC--------------EEEEECCCCceEEEEecccCCCCCceEEE
Confidence            876432        13789999999988877654332              33444333322222    25799999999


Q ss_pred             EECCCCceEEeecCCCcEEEeecCCC
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +|+|||.+|||||.||+|+||++...
T Consensus       351 ~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          351 GLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             EECCCCCEEEEeeCCCCEEEEecCCC
Confidence            99999999999999999999998753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-42  Score=291.00  Aligned_cols=290  Identities=15%  Similarity=0.217  Sum_probs=235.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .++++|.+.|.+++|+|++++|++++.|++|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+.+
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~   86 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEE
Q 020461           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI  161 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  161 (326)
                      ++.+..+. +...+.++.+++++..++.+..     +..+.+|++...     ......+.+|...|.+++|+| ++..|
T Consensus        87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-----D~~v~lWd~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEEGGGT-----TEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             CcEEEEEeCCCCcEEEEEEcCCCCEEEEECC-----CCeEEEEECCCC-----cchhhhhcccCCcEEEEEECCCCCCEE
Confidence            99887776 4567888899987766554432     234555655321     234567789999999999999 56899


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEE
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  238 (326)
                      ++|+.|++|++||+++++....+.  .+|...+..++++|  ++.+|++|+.|++|++||+++++++..+. +...+.++
T Consensus       157 ~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~  234 (304)
T 2ynn_A          157 ASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (304)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence            999999999999998766544332  35667788888876  77899999999999999999999998886 45689999


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc--eEEeecCCCcEEEee
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK--SFSSGGEDGYVRLHH  316 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~--~lat~s~Dg~i~l~~  316 (326)
                      +|+|++..+++++. |+             .+++|+....+....+..|.+.+++++|+|++.  ++|+|+.|| +.+|+
T Consensus       235 ~~~p~~~~l~s~s~-Dg-------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~  299 (304)
T 2ynn_A          235 VFHPTLPIIISGSE-DG-------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLS  299 (304)
T ss_dssp             EECSSSSEEEEEET-TS-------------CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEE
T ss_pred             EECCCCCEEEEEcC-CC-------------eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEE
Confidence            99999887766544 33             245666666666667788899999999999875  577776555 66666


Q ss_pred             cCCC
Q 020461          317 FDPD  320 (326)
Q Consensus       317 ~~~~  320 (326)
                      +..+
T Consensus       300 ~~~~  303 (304)
T 2ynn_A          300 LGND  303 (304)
T ss_dssp             CC--
T ss_pred             eccC
Confidence            6543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7e-42  Score=287.26  Aligned_cols=289  Identities=22%  Similarity=0.364  Sum_probs=235.5

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|...|.+++|+|++++|++++.|+.|++|+..+++....+.+|...|.+++|+|++++|++++.|++|++||+++
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   96 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS   96 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ++.+..+. +...+.++.+.++...++.+..     +..+.+|++.      .+.....+..|..+|.++.|+|++.+|+
T Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~iwd~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-----DESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECC------CCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            98887775 3456777888877665554432     2234455442      3456777889999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-c--eEEEE
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-P--VNAVT  239 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~  239 (326)
                      +++.|+.|++||+++++.+..+.  ..+...+..++++|++.+|++++.|+.|++||+++++++..+.... .  .....
T Consensus       166 ~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN  243 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred             EEeCCCcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence            99999999999999887765443  3466789999999999999999999999999999999888775321 1  22233


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec--CCCcEEEeec
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG--EDGYVRLHHF  317 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s--~Dg~i~l~~~  317 (326)
                      +++.....+++++.|+             .+++|+....+.+..+.+|.+.|.+++|+|++.+||+++  .|++|++|+.
T Consensus       244 ~~~~~~~~l~sg~~dg-------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          244 FSVTGGKWIVSGSEDN-------------LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             EECSSSCEEEECCTTS-------------CEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             EEeCCCcEEEEECCCC-------------EEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            4443444455555554             245666666666777889999999999999999999987  6999999997


Q ss_pred             C
Q 020461          318 D  318 (326)
Q Consensus       318 ~  318 (326)
                      |
T Consensus       311 d  311 (312)
T 4ery_A          311 D  311 (312)
T ss_dssp             C
T ss_pred             C
Confidence            6

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=295.15  Aligned_cols=248  Identities=18%  Similarity=0.213  Sum_probs=200.9

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee----ccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT----YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~----~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      ...|+..|.+++|+|++ .|++|+.||+|+|||+.+++.+..    +.+|.+.|.+++|+|++++|++|+.|++|++||+
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            34567889999999985 688999999999999999876544    3489999999999999999999999999999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-E
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-T  160 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  160 (326)
                      ++++.+                                                    ..+.+|.+.|.+++|+|++. +
T Consensus       157 ~~~~~~----------------------------------------------------~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          157 AQQVVL----------------------------------------------------SSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             TTTEEE----------------------------------------------------EEECCCSSCEEEEEECSSCTTE
T ss_pred             CCCcEE----------------------------------------------------EEEcCcCCceEEEEecCCCCCc
Confidence            876543                                                    23457888999999999885 7


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEE
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  238 (326)
                      |++++.|++|++||+++++....+.. ..|...+++++++|+ +.+|++|+.||+|++||+++++++..+. +...+.++
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v  263 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL  263 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred             eeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            89999999999999999887765432 345667899999985 5678999999999999999999998886 45789999


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEEeec
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHF  317 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~  317 (326)
                      +|+|++..++++++.|+.             +++|+...++. ..+.+|.+.|++++|+|++. +|+|||.||+|++|++
T Consensus       264 ~fsp~g~~~lasgs~D~~-------------i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          264 VFSPHSVPFLASLSEDCS-------------LAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             EECSSSSCCEEEEETTSC-------------EEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             EEccCCCeEEEEEeCCCe-------------EEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence            999998776666665542             34555544443 34678999999999999987 5789999999999999


Q ss_pred             CCCc
Q 020461          318 DPDY  321 (326)
Q Consensus       318 ~~~~  321 (326)
                      +.+-
T Consensus       330 ~~~~  333 (344)
T 4gqb_B          330 PTEP  333 (344)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            8764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.7e-42  Score=291.24  Aligned_cols=297  Identities=22%  Similarity=0.319  Sum_probs=222.4

Q ss_pred             eeeeecCCceeEEEE-----cc-CCCEEEeecCCCCeEEEecCCC-------CeeeeccCcccceEEEEEcCCCCeEEEE
Q 020461            4 ILMKGHERPLTYLKY-----NK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITG   70 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~-----s~-~~~~l~s~~~d~~v~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~l~s~   70 (326)
                      ..|++|.+.|++++|     ++ ++++|++|+.|++|++|++.++       .....+.+|...|.+++|+|++++++++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~   94 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS   94 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence            468999999999999     76 8999999999999999998754       3456789999999999999999999999


Q ss_pred             eCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe---ccCc
Q 020461           71 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQ  146 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  146 (326)
                      +.|++|++||+++++.+..+. +..++.++.|++++..++.+..     +..+.+|++..       ......   .+|.
T Consensus        95 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-----d~~i~~wd~~~-------~~~~~~~~~~~~~  162 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-----EREIKLWNILG-------ECKFSSAEKENHS  162 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-----TSCEEEEESSS-------CEEEECCTTTSCS
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-----CCEEEEEeccC-------CceeeeecccCCC
Confidence            999999999999998887775 4567888999987655544332     22344454321       122222   3688


Q ss_pred             cceeEEEEecCC----------cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEE
Q 020461          147 GRINRAVWGPLN----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (326)
Q Consensus       147 ~~i~~~~~~~~~----------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~  216 (326)
                      ..|.++.|+|++          .+|++++.|++|++||.+ .+....   ..+|...|.+++|+|++.+|++|+.|++|+
T Consensus       163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~---~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEE---EECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEE---EcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            889999999986          789999999999999954 333322   347889999999999999999999999999


Q ss_pred             EeecC-CcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeee-EeecccceeeeccccccCcceeEE
Q 020461          217 LWDAR-TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDKILQEEIGGVKGHFGPINAL  294 (326)
Q Consensus       217 iwd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v  294 (326)
                      +||++ .......+.....+.+++|+|++..+++ +.++.  +..+|...+.... ..+............+|...|+++
T Consensus       239 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~-~~d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  315 (343)
T 2xzm_R          239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV-GTDQG--VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL  315 (343)
T ss_dssp             EEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE-EESSC--EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred             EEECCCCcccceeecCCCcEEEEEECCCCCEEEE-ECCCC--EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence            99994 4445555555667999999999866543 33322  3334332221100 000000000111234788999999


Q ss_pred             EECCCCceEEeecCCCcEEEeecCC
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +|+|+|++||+|+.||+|++|+++.
T Consensus       316 ~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          316 AWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EECCCCCeEEEecCCceEEEEEEEc
Confidence            9999999999999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.8e-43  Score=298.41  Aligned_cols=291  Identities=16%  Similarity=0.207  Sum_probs=218.6

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecC------CCCeEEEecCCCCeeee----ccCcccceEEEEEcCCCCeEEEEeCC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAK------DHTPTVWFADNGERLGT----YRGHNGAVWCCDVSRDSMTLITGSAD   73 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~------d~~v~iw~~~~~~~~~~----~~~h~~~V~~~~~~~~~~~l~s~~~d   73 (326)
                      ....+|+..|.+++|||||++|++||.      |+++++|+..++.....    ..+|...|.+++|+|+++ +++++.|
T Consensus        36 ~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~d  114 (357)
T 4g56_B           36 TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDS  114 (357)
T ss_dssp             ----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred             CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence            445679999999999999999999997      77899998877755433    356888999999999875 5678899


Q ss_pred             CcEEEEEccCCcEEEEE-----ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461           74 QTAKLWNVETGAQLFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (326)
                      ++|++||+.+++.....     .+...+.++.++++...++.+..     +..+.+|++.      .+..+..+++|...
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----dg~v~iwd~~------~~~~~~~~~~h~~~  183 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----DFSVKVWDLS------QKAVLKSYNAHSSE  183 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSC
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----CCeEEEEECC------CCcEEEEEcCCCCC
Confidence            99999999887654322     34567888889887665554432     2234445432      35677888999999


Q ss_pred             eeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceE
Q 020461          149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       149 i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~  226 (326)
                      |++++|+|++. .+++++.|++|++||+++++....+. ...|...+++++|+|+ +.+|++|+.|+.|++||+++++++
T Consensus       184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~  262 (357)
T 4g56_B          184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA  262 (357)
T ss_dssp             EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred             EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-eccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence            99999999875 78999999999999999887665443 2356778999999997 467889999999999999999998


Q ss_pred             EEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEE
Q 020461          227 KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFS  304 (326)
Q Consensus       227 ~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~la  304 (326)
                      +.+. +...+.+++|+|++..++++++.|+.             +++|+...++.+. ..+|.+.|++|+|+| |+.+||
T Consensus       263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-------------i~iwd~~~~~~~~-~~~H~~~V~~vafsP~d~~~l~  328 (357)
T 4g56_B          263 QTSAVHSQNITGLAYSYHSSPFLASISEDCT-------------VAVLDADFSEVFR-DLSHRDFVTGVAWSPLDHSKFT  328 (357)
T ss_dssp             EEECCCSSCEEEEEECSSSSCCEEEEETTSC-------------EEEECTTSCEEEE-ECCCSSCEEEEEECSSSTTEEE
T ss_pred             EEEeccceeEEEEEEcCCCCCEEEEEeCCCE-------------EEEEECCCCcEeE-ECCCCCCEEEEEEeCCCCCEEE
Confidence            8876 45689999999998776666665542             4455555544443 347999999999998 899999


Q ss_pred             eecCCCcEEEeecCCCc
Q 020461          305 SGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       305 t~s~Dg~i~l~~~~~~~  321 (326)
                      |||.||+|++|+++.+.
T Consensus       329 s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          329 TVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEETTSCEEEEECC---
T ss_pred             EEcCCCeEEEEECCCCC
Confidence            99999999999997754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.2e-42  Score=290.57  Aligned_cols=303  Identities=21%  Similarity=0.306  Sum_probs=225.7

Q ss_pred             eeeeecCC-ceeEEEEccCCCEEEeecCCCCeEEEecCCCCee---eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461            4 ILMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL---GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~-~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w   79 (326)
                      ..+++|.. .|.+++|+|+|++|++|+.|++|+||+..++...   ....+|.+.|.+++|+|++++|++|+.|+++++|
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw   88 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW   88 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence            45778988 8999999999999999999999999999887543   2236899999999999999999999999999999


Q ss_pred             EccCCcE--EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           80 NVETGAQ--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        80 d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      |+.++..  +..+. +..++.++.|++++..++.+..     +..+.+|++...   .....+..+.+|...|.+++|+|
T Consensus        89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~-----D~~v~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEE---DEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             EECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECTT---SCEEEEEEECCCCSCEEEEEECS
T ss_pred             EccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC-----CCeEEEEECCCC---CCeEEEEEecCcCCCeEEEEECC
Confidence            9987643  33443 4567888899987665554432     233455554321   11234567789999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc-------------
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-------------  223 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~-------------  223 (326)
                      ++.+|++|+.|++|++||.++++.... ....+|...|.+++|+|++.+|++|+.|++|++||....             
T Consensus       161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          161 SQELLASASYDDTVKLYREEEDDWVCC-ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             SSSCEEEEETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCEEEE-EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence            999999999999999999987653211 223579999999999999999999999999999996432             


Q ss_pred             --ceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          224 --ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       224 --~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                        +++..+.  +...+..++|+|++..++++++++...+  ++........   ............+|.+.|++++|+|+
T Consensus       240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~v--w~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~v~~~p~  314 (345)
T 3fm0_A          240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV--FQEDPNSDPQ---QPTFSLTAHLHQAHSQDVNCVAWNPK  314 (345)
T ss_dssp             EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEE--EEECTTSCTT---SCCEEEEEEETTSSSSCEEEEEECSS
T ss_pred             ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEE--EEeCCCCCcc---eeeEEEEeeecccccCcEeEeEEeCC
Confidence              2233332  3457899999999988887766544322  2211110000   00000112234689999999999999


Q ss_pred             Cc-eEEeecCCCcEEEeecCCC
Q 020461          300 GK-SFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       300 ~~-~lat~s~Dg~i~l~~~~~~  320 (326)
                      +. +|||||.||+|+||++...
T Consensus       315 ~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          315 EPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             STTEEEEEETTSCEEEEEECC-
T ss_pred             CceEEEEcCCCCcEEEEEecCC
Confidence            84 9999999999999998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.6e-42  Score=312.65  Aligned_cols=301  Identities=15%  Similarity=0.172  Sum_probs=228.5

Q ss_pred             eeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .+.+|...|.+++|+|+++ +|++|+.|++|++|+..++++..++.+|.+.|.+++|+|++++|++++.|++|++||+.+
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~  221 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  221 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            4689999999999999987 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEE--------ecCCCcceeeeecCCeEEEE-EcCccceeceee---eeeeeccC---------------------
Q 020461           84 GAQLFTF--------NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAI---HVKRIARD---------------------  130 (326)
Q Consensus        84 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~---------------------  130 (326)
                      ++....+        .+...+.++.|++++..++. +.+..+.++...   ....+...                     
T Consensus       222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  301 (611)
T 1nr0_A          222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS  301 (611)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred             CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence            9887776        24567788889887655444 333332222110   00000000                     


Q ss_pred             -------CCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc-----------------
Q 020461          131 -------PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-----------------  186 (326)
Q Consensus       131 -------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-----------------  186 (326)
                             .....+.....+.+|...|.+++|+|++++|++++.|++|++||+.+++.......                 
T Consensus       302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l  381 (611)
T 1nr0_A          302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL  381 (611)
T ss_dssp             TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred             CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence                   00012234556779999999999999999999999999999999987654321100                 


Q ss_pred             --------------------------------------------------------------ccCcceeeEEEEEcCCCC
Q 020461          187 --------------------------------------------------------------ETGHKKTITSLAKAADGS  204 (326)
Q Consensus       187 --------------------------------------------------------------~~~h~~~v~~v~~s~~~~  204 (326)
                                                                                    ...|...+.+++++|||+
T Consensus       382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~  461 (611)
T 1nr0_A          382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ  461 (611)
T ss_dssp             EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred             EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence                                                                          001234467899999999


Q ss_pred             eEEEEeCCCeEEEeecCCcce--EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeee
Q 020461          205 HFLTGSLDKSAKLWDARTLEL--IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEI  281 (326)
Q Consensus       205 ~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~  281 (326)
                      +|++|+.|++|++||+++++.  +....+...+.+++|+|++..+++++.+..              +++|+... .+..
T Consensus       462 ~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~--------------v~~w~~~~~~~~~  527 (611)
T 1nr0_A          462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK--------------VIPYSVANNFELA  527 (611)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC--------------EEEEEGGGTTEES
T ss_pred             EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCC--------------EEEEEcCCCCcee
Confidence            999999999999999987643  333446678999999999988877654332              34444433 2222


Q ss_pred             cc--ccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          282 GG--VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       282 ~~--~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ..  ..+|.+.|++++|+|||++|||||.|++|+||+++.
T Consensus       528 ~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          528 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             eeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            22  345999999999999999999999999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.9e-41  Score=285.01  Aligned_cols=295  Identities=22%  Similarity=0.299  Sum_probs=222.6

Q ss_pred             eeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCC-----eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~   78 (326)
                      +|+||.+.|++++|+|+ +++|+|||.|++|+|||+.+.+     ....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            58899999999999998 6899999999999999987654     45678999999999999999999999999999999


Q ss_pred             EEccCCcEEEEEecC-CCcceeeeecCCeEEE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           79 WNVETGAQLFTFNFD-SPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        79 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      |+............. .......+.+.+..++ .+.+..      +.++...     ..........+|...+..+.|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~------~~~~d~~-----~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT------IKLWNTL-----GVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSC------EEEECTT-----SCEEEEECSSSCSSCEEEEEECS
T ss_pred             EeecccceeeeecCCCCceeEEEEeecCccceeecCCCe------EEEEEeC-----CCceEEEEeccccCcccceEEcc
Confidence            999888766655433 3333344444444333 333322      2233221     11223444567888999999988


Q ss_pred             CC--cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc
Q 020461          157 LN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP  234 (326)
Q Consensus       157 ~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  234 (326)
                      ++  ..+++++.|+.|++||+++++....+   .+|...|++++++|++.+|++|+.|++|++||+++.+++..+.....
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  258 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNH---IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI  258 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCceeeEe---cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce
Confidence            65  57889999999999999988776554   47899999999999999999999999999999999999999988889


Q ss_pred             eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEE
Q 020461          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      +.+++++|++..+ +++. ++ .+..+|.+.+.....+   ..........+|...|++++|+|||++||||+.||+|+|
T Consensus       259 v~~~~~~~~~~~~-~~~~-d~-~i~iwd~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i  332 (340)
T 4aow_A          259 INALCFSPNRYWL-CAAT-GP-SIKIWDLEGKIIVDEL---KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV  332 (340)
T ss_dssp             EEEEEECSSSSEE-EEEE-TT-EEEEEETTTTEEEEEE---CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEeeecCCCCcee-eccC-CC-EEEEEECCCCeEEEec---cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            9999999976543 3332 32 2444554433321111   111112234578999999999999999999999999999


Q ss_pred             eecCC
Q 020461          315 HHFDP  319 (326)
Q Consensus       315 ~~~~~  319 (326)
                      |++..
T Consensus       333 W~~~t  337 (340)
T 4aow_A          333 WQVTI  337 (340)
T ss_dssp             EEEEC
T ss_pred             EeCCC
Confidence            99864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-41  Score=308.20  Aligned_cols=300  Identities=18%  Similarity=0.198  Sum_probs=236.1

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      ...+.+.+.+++|+|||++|++++. ++|++|++.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++
T Consensus        14 ~~~~~g~~~~~~~spdg~~l~~~~~-~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~   92 (611)
T 1nr0_A           14 PRTARGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   92 (611)
T ss_dssp             CCCCTTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CCcccCceeEEeeCCCCCEEEeCCC-CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence            3445677889999999999999884 699999999999999999999999999999999999999999999999997654


Q ss_pred             E--EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EE
Q 020461           86 Q--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI  161 (326)
Q Consensus        86 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  161 (326)
                      .  ...+. +..++.++.|++++..+++...... ....+.+++.        +.....+.+|...|++++|+|+++ .|
T Consensus        93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd~--------~~~~~~l~gh~~~v~~v~f~p~~~~~l  163 (611)
T 1nr0_A           93 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHVFLFDT--------GTSNGNLTGQARAMNSVDFKPSRPFRI  163 (611)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEEEETTT--------CCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             ceeeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEEEEeeC--------CCCcceecCCCCCceEEEECCCCCeEE
Confidence            3  23333 4577888999988776655443110 0112223321        223445789999999999999987 69


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE--------eecc
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--------VTER  233 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------~~~~  233 (326)
                      ++|+.|++|++||..+++....+   .+|...|.+++|+|++.+|++|+.|++|++||+++++++..+        .+..
T Consensus       164 ~s~s~D~~v~lwd~~~~~~~~~l---~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~  240 (611)
T 1nr0_A          164 ISGSDDNTVAIFEGPPFKFKSTF---GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG  240 (611)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred             EEEeCCCeEEEEECCCCeEeeee---ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence            99999999999999887665544   479999999999999999999999999999999999888877        3556


Q ss_pred             ceEEEEeCCCCCeeEEecCCCcceeEeecccCceee-------------------------------eEeecccceeeec
Q 020461          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE-------------------------------AKFFDKILQEEIG  282 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------------------------~~~~~~~~~~~~~  282 (326)
                      .+.+++|+|++..+++++.+.  .+..||.+.+...                               +++|+...+....
T Consensus       241 ~V~~v~~spdg~~l~s~s~D~--~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~  318 (611)
T 1nr0_A          241 SVFGLTWSPDGTKIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ  318 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCC--eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce
Confidence            899999999998887765443  2445565443321                               2334433334445


Q ss_pred             cccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .+.+|...|++++|+|||++|++++.|++|++|++...
T Consensus       319 ~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence            56799999999999999999999999999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.7e-41  Score=280.96  Aligned_cols=258  Identities=18%  Similarity=0.261  Sum_probs=199.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~w   79 (326)
                      .++.+|.+.|.+++|+|+|++|++|+.|++|+||++.++  +++.++.+|.++|++++|+++  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            568899999999999999999999999999999998753  677889999999999999864  8899999999999999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--  157 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  157 (326)
                      |+++++..                                                  .+..+.+|...|.+++|+|+  
T Consensus        83 d~~~~~~~--------------------------------------------------~~~~~~~h~~~v~~v~~~p~~~  112 (297)
T 2pm7_B           83 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY  112 (297)
T ss_dssp             EBSSSCBC--------------------------------------------------CCEEECCCSSCEEEEEECCGGG
T ss_pred             EcCCCceE--------------------------------------------------EEEEeecCCCceeEEEeCcCCC
Confidence            98764310                                                  11223567788999999997  


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-------------CCeEEEEeCCCeEEEeecCCcc
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-------------GSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-------------~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      +.+|++++.|++|++||++++..... ....+|...|.+++|+|+             +.+|++|+.|++|++||+++++
T Consensus       113 g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          113 GPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             CSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             CcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence            78999999999999999987642211 223578899999999997             5689999999999999998765


Q ss_pred             ----eEEEEe-eccceEEEEeCCCC--CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461          225 ----LIKTYV-TERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (326)
Q Consensus       225 ----~~~~~~-~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  297 (326)
                          +...+. +...+.+++|+|++  ...+++++.|+. +..+|.+.....       .........+|...|.+++|+
T Consensus       192 ~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s  263 (297)
T 2pm7_B          192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQGP-------WKKTLLKEEKFPDVLWRASWS  263 (297)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTTSC-------CEEEESSSSCCSSCEEEEEEC
T ss_pred             ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCCCCc-------cceeeeecccCCCcEEEEEEC
Confidence                444443 45679999999986  344555555542 222322211000       001111124678899999999


Q ss_pred             CCCceEEeecCCCcEEEeecCCC
Q 020461          298 PDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       298 ~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      |+|++||+++.||+|+||+...+
T Consensus       264 ~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          264 LSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             SSSCCEEEEETTSCEEEEEECTT
T ss_pred             CCCCEEEEEcCCCcEEEEEECCC
Confidence            99999999999999999998744

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-40  Score=279.44  Aligned_cols=292  Identities=16%  Similarity=0.225  Sum_probs=211.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--Ceeeec-cC-cccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTY-RG-HNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~-~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~w   79 (326)
                      ..+++|.++|.+++|+|+  +|++|+.|++|++|++.++  ..+..+ .+ |.+.|.+++|+|++++|++++.|++|++|
T Consensus         8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw   85 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW   85 (330)
T ss_dssp             EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            568899999999999998  9999999999999999875  345555 44 99999999999999999999999999999


Q ss_pred             EccCC-------cEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           80 NVETG-------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        80 d~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      |+...       +....+. +..++.++.|++++..++.+..     +..+.+|++...  ....+.+..+.+|...|.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-----D~~v~iwd~~~~--~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-----DKSVWIWETDES--GEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             EC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-----TSCEEEEECCTT--CCCCEEEEEECCCSSCEEE
T ss_pred             EcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCEEEEEeccCC--CCCeEEEEEeccCCCceEE
Confidence            98532       2333333 4567888899987765554432     234455554211  1122456778899999999


Q ss_pred             EEEecCCcEEEEeeCCCcEEEEECCCC--ccccccccccCcceeeEEEEEcCC--CCeEEEEeCCCeEEEeecCCc----
Q 020461          152 AVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTL----  223 (326)
Q Consensus       152 ~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~s~dg~i~iwd~~~~----  223 (326)
                      +.|+|++.+|++|+.|++|++||..++  +++..   ..+|...|.+++|+|+  +.+|++|+.|++|++||++++    
T Consensus       159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~  235 (330)
T 2hes_X          159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD  235 (330)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE---ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence            999999999999999999999998765  33333   3579999999999998  678999999999999998765    


Q ss_pred             ----ceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCc-ceeEEEE
Q 020461          224 ----ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALAF  296 (326)
Q Consensus       224 ----~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~  296 (326)
                          .+...+.  +...+.+++|++.+ .+++ ++.|+. +..+|...+..         ........+|.. .|++++|
T Consensus       236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s-~~~dg~-v~iw~~~~~~~---------~~~~~~~~~h~~~~v~~v~~  303 (330)
T 2hes_X          236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS-VGADGV-LAVYEEVDGEW---------KVFAKRALCHGVYEINVVKW  303 (330)
T ss_dssp             CEEEEEEEECCSCCSSCEEEEEECTTS-CEEE-EETTSC-EEEEEEETTEE---------EEEEEESCTTTTSCEEEEEE
T ss_pred             cceeEEeeecccccccceEEEEEcCCC-EEEE-EeCCCE-EEEEEcCCCce---------EEEeccccccccceEEEEEE
Confidence                2333332  45679999999654 4444 444432 22233221111         011122356877 8999999


Q ss_pred             CC--CCceEEeecCCCcEEEeecCC
Q 020461          297 NP--DGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       297 s~--d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +|  ++.+||||+.||+|+||+++.
T Consensus       304 ~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          304 LELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             C-----CCEEEEETTSEEEEEEC--
T ss_pred             ecCCCceEEEEecCCCcEEEEEecc
Confidence            99  799999999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.6e-41  Score=293.06  Aligned_cols=301  Identities=14%  Similarity=0.169  Sum_probs=225.6

Q ss_pred             eeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCe--eeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEE
Q 020461            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWN   80 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd   80 (326)
                      ...+|...|+|++|+| ++++||+|+.||+|+|||+.+++.  ...+.+|.+.|.+++|+| ++++|+||+.|++|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            4567899999999999 567999999999999999987754  456678999999999998 688999999999999999


Q ss_pred             ccCCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           81 VETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      ++++........+   ..+.++.+.++..+++++..     +..+.++++.       +..+..+.+|...|++++|+|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~-------~~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-----VGNVILLNMD-------GKELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-----SSBEEEEESS-------SCBCCCSBCCSSCEEEEEECTT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-----CCcEeeeccC-------cceeEEEecccceEEeeeecCC
Confidence            9876544333322   23456777777666555432     2234444432       2345567889999999999999


Q ss_pred             Cc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc---
Q 020461          158 NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER---  233 (326)
Q Consensus       158 ~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---  233 (326)
                      +. +|++|+.|++|++||+++.+....+....+|...|++++|+|++.+|++++.||+|++||++++++...+....   
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~  341 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH  341 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred             CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence            86 78899999999999998877665555556899999999999999999999999999999999988777653211   


Q ss_pred             ----ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-cccCcceeEE-EECCCCceEEeec
Q 020461          234 ----PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINAL-AFNPDGKSFSSGG  307 (326)
Q Consensus       234 ----~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v-~~s~d~~~lat~s  307 (326)
                          ......++|.+..++++...+...+......  ...+++|+...++.+..+ .+|...|.++ +|+|+|.+||+|+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYE--LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTC--CCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecC--CCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence                1234567787777776655444322211111  113567776665555443 4688889887 6999999999987


Q ss_pred             CCCcEEEeecCCC
Q 020461          308 EDGYVRLHHFDPD  320 (326)
Q Consensus       308 ~Dg~i~l~~~~~~  320 (326)
                       |++|+||++++.
T Consensus       420 -d~~i~iW~~~~g  431 (435)
T 4e54_B          420 -GYHILIWSQQEA  431 (435)
T ss_dssp             -SSEEEECCCC--
T ss_pred             -CCcEEEEECCcC
Confidence             889999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.8e-41  Score=285.24  Aligned_cols=254  Identities=17%  Similarity=0.242  Sum_probs=194.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~w   79 (326)
                      .++.+|.+.|.+++|+|+|++|++|+.|++|+|||+.++.  .+..+.+|.++|++++|++  ++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            5678999999999999999999999999999999998774  4678999999999999986  48899999999999999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--  157 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  157 (326)
                      |+++++.                                                  .....+.+|...|++++|+|+  
T Consensus        87 d~~~~~~--------------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~  116 (316)
T 3bg1_A           87 REENGTW--------------------------------------------------EKSHEHAGHDSSVNSVCWAPHDY  116 (316)
T ss_dssp             CCSSSCC--------------------------------------------------CEEEEECCCSSCCCEEEECCTTT
T ss_pred             ECCCCcc--------------------------------------------------eEEEEccCCCCceEEEEECCCCC
Confidence            9876431                                                  112234578889999999998  


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-----------------CCeEEEEeCCCeEEEeec
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-----------------GSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----------------~~~l~s~s~dg~i~iwd~  220 (326)
                      +.+|++|+.|++|++||++.+..........+|...+.+++|+|+                 +.+|++|+.|++|++||+
T Consensus       117 g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          117 GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred             CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence            779999999999999999875332212234578889999999997                 468999999999999999


Q ss_pred             CCc---ceEEEEe-eccceEEEEeCCCC---CeeEEecCCCcceeEeecccCceeeeEeecccc----eeeeccccccCc
Q 020461          221 RTL---ELIKTYV-TERPVNAVTMSPLL---DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL----QEEIGGVKGHFG  289 (326)
Q Consensus       221 ~~~---~~~~~~~-~~~~~~~~~~s~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~h~~  289 (326)
                      +..   +++..+. +...+.+++|+|++   ...+++++.|+.             +++|+...    ......+.+|.+
T Consensus       197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-------------v~iw~~~~~~~~~~~~~~~~~~~~  263 (316)
T 3bg1_A          197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-------------VFIWTCDDASSNTWSPKLLHKFND  263 (316)
T ss_dssp             CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-------------EEEEECSSTTCCCCBCCEEEECSS
T ss_pred             CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-------------EEEEEccCccccchhhhhhhcCCC
Confidence            754   3444443 45679999999986   234444555542             23343221    001122456889


Q ss_pred             ceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          290 PINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       290 ~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .|++++|+|++.+||+|+.||+|+||+...+
T Consensus       264 ~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          264 VVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             CEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            9999999999999999999999999998644

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-39  Score=282.04  Aligned_cols=285  Identities=23%  Similarity=0.403  Sum_probs=222.0

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc------------------ceEEEEEcCCCCeEEE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------------------AVWCCDVSRDSMTLIT   69 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~------------------~V~~~~~~~~~~~l~s   69 (326)
                      +|...|.+++|||||++|++++ ++++++|+..+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999876 68999999999998888766542                  4899999999999999


Q ss_pred             EeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461           70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (326)
Q Consensus        70 ~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (326)
                      |+.|++|++||+.+++.+..+. +...+.++.|.+++..++.+..     +..+.+|++.      .+.....+. +...
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~v~iwd~~------~~~~~~~~~-~~~~  208 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLR------TGQCSLTLS-IEDG  208 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TTEEEEEEE-CSSC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-----CCcEEEEECC------CCeeEEEEE-cCCC
Confidence            9999999999999998877765 4566788888876655544332     2344555443      223333333 4567


Q ss_pred             eeEEEEec-CCcEEEEeeCCCcEEEEECCCCccccccc----cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461          149 INRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESD----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       149 i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (326)
                      +.+++++| ++.+|++|+.|++|++||+++++.+..+.    ...+|...|.+++|+|++.+|++|+.|++|++||+++.
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999 88999999999999999999887665432    12478999999999999999999999999999999764


Q ss_pred             c------------eEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461          224 E------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP  290 (326)
Q Consensus       224 ~------------~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~  290 (326)
                      .            +...+. +...+.+++++|++..+++++. |+             .+++|+...++.+..+.+|.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~-------------~v~iwd~~~~~~~~~l~~h~~~  354 (393)
T 1erj_A          289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DR-------------GVLFWDKKSGNPLLMLQGHRNS  354 (393)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TS-------------EEEEEETTTCCEEEEEECCSSC
T ss_pred             CCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CC-------------eEEEEECCCCeEEEEECCCCCC
Confidence            2            233332 4456889999999887766543 32             2456666666666778899999


Q ss_pred             eeEEEECC------CCceEEeecCCCcEEEeecCC
Q 020461          291 INALAFNP------DGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       291 v~~v~~s~------d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      |.+++|+|      ++.+||||+.||+|+||+++.
T Consensus       355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99999986      688999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.3e-41  Score=284.29  Aligned_cols=251  Identities=16%  Similarity=0.207  Sum_probs=199.7

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC-----------CeeeeccCcccceEEEEEcCCCCeEEEEeCC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-----------ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD   73 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~-----------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d   73 (326)
                      ....|+..|.+++|+|||++|++++ |+++|+||....           ........|...|.+++|+|++ .|++|+.|
T Consensus        25 ~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d  102 (344)
T 4gqb_B           25 APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS  102 (344)
T ss_dssp             SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT
T ss_pred             CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC
Confidence            3446778899999999999999887 778898873211           1111223456789999999985 68899999


Q ss_pred             CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      |+|++||+++++.....                                                .....+|.+.|++++
T Consensus       103 g~v~lWd~~~~~~~~~~------------------------------------------------~~~~~~H~~~V~~v~  134 (344)
T 4gqb_B          103 GAVELWELDENETLIVS------------------------------------------------KFCKYEHDDIVSTVS  134 (344)
T ss_dssp             SEEEEEEECTTSSCEEE------------------------------------------------EEEEECCSSCEEEEE
T ss_pred             CEEEEEeccCCCceeEe------------------------------------------------eccccCCCCCEEEEE
Confidence            99999999877543211                                                122357889999999


Q ss_pred             EecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceEEEEe--
Q 020461          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYV--  230 (326)
Q Consensus       154 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~--  230 (326)
                      |+|++++|++|+.|++|++||+++++.+..+   .+|...|.+++|++++. +|++|+.|++|++||++++++...+.  
T Consensus       135 ~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  211 (344)
T 4gqb_B          135 VLSSGTQAVSGSKDICIKVWDLAQQVVLSSY---RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS  211 (344)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence            9999999999999999999999998877655   47999999999999885 68999999999999999999888764  


Q ss_pred             -eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-ceEEeecC
Q 020461          231 -TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGE  308 (326)
Q Consensus       231 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-~~lat~s~  308 (326)
                       ....+.+++++|.+..++++++.|+             .+++|+....+.+..+.+|...|++++|+|++ ++||+||.
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg-------------~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~  278 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENG-------------TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE  278 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTS-------------EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET
T ss_pred             eeeccceeeeecCCCCcceEEeccCC-------------cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC
Confidence             2346889999998877776666554             24556665666667788999999999999998 57999999


Q ss_pred             CCcEEEeecCCCc
Q 020461          309 DGYVRLHHFDPDY  321 (326)
Q Consensus       309 Dg~i~l~~~~~~~  321 (326)
                      |++|+||+.....
T Consensus       279 D~~i~vwd~~~~~  291 (344)
T 4gqb_B          279 DCSLAVLDSSLSE  291 (344)
T ss_dssp             TSCEEEECTTCCE
T ss_pred             CCeEEEEECCCCc
Confidence            9999999987543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-39  Score=301.64  Aligned_cols=298  Identities=21%  Similarity=0.298  Sum_probs=225.7

Q ss_pred             eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCC-----CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461            4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~-----~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      ..+++|.+.|++++|+|++ ++|+|||.|++|++|++.+.     .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            3588999999999999875 79999999999999998754     34567889999999999999999999999999999


Q ss_pred             EEEccCCcEEEEEe-cCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEE---eccCccceeEE
Q 020461           78 LWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLI---LKGPQGRINRA  152 (326)
Q Consensus        78 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~  152 (326)
                      +||+.+++....+. +...+.++.+++++..++. +.+.      .+.+|+...      ......   ..+|...|.++
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~------~~~~~~~~~~~~h~~~v~~~  523 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLG------ECKYTISEGGEGHRDWVSCV  523 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTS------CEEEEECSSTTSCSSCEEEE
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCC------CcceeeccCCCCCCCcEEEE
Confidence            99999998877765 4567888889886654443 3333      334443211      111111   14688899999


Q ss_pred             EEecCC--cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          153 VWGPLN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       153 ~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      .|+|++  ..+++++.|++|++||+++++....+   .+|...|++++++|++.+|++|+.||+|++||+++++++..+.
T Consensus       524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred             EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence            999986  58999999999999999988766544   4799999999999999999999999999999999999988887


Q ss_pred             eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee-------eccccccCcceeEEEECCCCceE
Q 020461          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-------IGGVKGHFGPINALAFNPDGKSF  303 (326)
Q Consensus       231 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~v~~s~d~~~l  303 (326)
                      ....+.+++|+|++..++.+. .+.  +..+|.+.+.....+........       ......+.-.+++++|||||++|
T Consensus       601 ~~~~v~~~~~sp~~~~l~~~~-~~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l  677 (694)
T 3dm0_A          601 ANSVIHALCFSPNRYWLCAAT-EHG--IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL  677 (694)
T ss_dssp             CSSCEEEEEECSSSSEEEEEE-TTE--EEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred             CCCcEEEEEEcCCCcEEEEEc-CCC--EEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence            778899999999876665443 222  45555554433221111000000       00011222347899999999999


Q ss_pred             EeecCCCcEEEeecCC
Q 020461          304 SSGGEDGYVRLHHFDP  319 (326)
Q Consensus       304 at~s~Dg~i~l~~~~~  319 (326)
                      ++|+.||+|+||++..
T Consensus       678 ~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          678 FSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEEETTSEEEEEEC--
T ss_pred             EEEcCCCeEEEEeccC
Confidence            9999999999999853

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.7e-39  Score=290.97  Aligned_cols=279  Identities=28%  Similarity=0.513  Sum_probs=228.3

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|...|.+++|+|++++|++++.|++|++|+.. +..+..+.+|...|.+++|+|+++++++++.|++|++||.. 
T Consensus       297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-  374 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-  374 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence            4577899999999999999999999999999999975 45567788999999999999999999999999999999964 


Q ss_pred             CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ++.+..+. +..++.++.++++...++.+..     +..+.+++.       .++.+..+.+|...|.+++|+|++++|+
T Consensus       375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~-------~~~~~~~~~~~~~~v~~~~~s~d~~~l~  442 (577)
T 2ymu_A          375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWNR-------NGQLLQTLTGHSSSVWGVAFSPDDQTIA  442 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEECT-------TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CCEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeC-------CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence            55555554 4567788888887665544332     123334431       3456778889999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeC
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS  241 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s  241 (326)
                      +++.|++|++||.. ++.+..+   .+|...|++++|+|++.+|++++.|++|++||. ++++++.+. +...+.+++|+
T Consensus       443 ~~~~d~~v~~w~~~-~~~~~~~---~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s  517 (577)
T 2ymu_A          443 SASDDKTVKLWNRN-GQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS  517 (577)
T ss_dssp             EEETTSEEEEEETT-SCEEEEE---ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred             EEcCCCEEEEEECC-CCEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEc
Confidence            99999999999975 4444433   478999999999999999999999999999995 677777775 45689999999


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      |++..+++++. |+             .+++|+. .++.+..+.+|.+.|++++|+|||++|+|++.|++|++|+
T Consensus       518 ~dg~~l~s~~~-dg-------------~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          518 PDGQTIASASD-DK-------------TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TTSSCEEEEET-TS-------------EEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEC-cC-------------EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99988776543 32             2455653 3455667889999999999999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.2e-39  Score=277.38  Aligned_cols=296  Identities=16%  Similarity=0.224  Sum_probs=223.3

Q ss_pred             eeeeecCCceeEEEEccCC-CEEEeecCCCCeEEEecCCCCeeeecc--CcccceEEEEEcC-CCCeEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSR-DSMTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~w   79 (326)
                      ..+.+|...|.+++|+|++ ++|++|+.|+.|+||++.+++....+.  +|.+.|.+++|+| ++++|++++.|++|++|
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence            4577899999999999999 899999999999999999888776665  6999999999999 67899999999999999


Q ss_pred             EccCCcEEEEEe-c---CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           80 NVETGAQLFTFN-F---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        80 d~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      |+.+. ....+. .   ...+.++.++++...++.+..     +..+.++++       .+..+..+.+|...|.+++|+
T Consensus       147 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~-------~~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          147 DFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----TGRLLLLGL-------DGHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             ETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEET-----TSEEEEEET-------TSCEEEEEECSSSCEEEEEEC
T ss_pred             ECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECC-----CCCEEEEEC-------CCCEEEEeccCCCcEEEEEEC
Confidence            99864 343333 2   245778888887666555432     234455554       245777888999999999999


Q ss_pred             cCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCcceEEEEeec-
Q 020461          156 PLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTE-  232 (326)
Q Consensus       156 ~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-  232 (326)
                      |+++ +|++++.|++|++||+++.+.........+|...|.+++|+| ++.+|++++.|+.|++||+++++....+... 
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence            9998 999999999999999987432222222236889999999999 9999999999999999999998876665421 


Q ss_pred             -------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc--cCcceeEEEECCCCceE
Q 020461          233 -------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG--HFGPINALAFNPDGKSF  303 (326)
Q Consensus       233 -------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s~d~~~l  303 (326)
                             ..+. ..|+|.+..++++...++....     .....+++|+...++.+..+.+  |.+.+..++|+|++++|
T Consensus       294 ~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~-----s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l  367 (383)
T 3ei3_B          294 HRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLL-----NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVL  367 (383)
T ss_dssp             BCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCT-----TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEE
T ss_pred             ccccccccceE-EeccCCCCceEEEecCCccccc-----CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEE
Confidence                   1222 3555555554443322222100     0111356677666666666665  56778888999999999


Q ss_pred             EeecCCCcEEEeecCC
Q 020461          304 SSGGEDGYVRLHHFDP  319 (326)
Q Consensus       304 at~s~Dg~i~l~~~~~  319 (326)
                      |+|+ ||.|+||+++.
T Consensus       368 ~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          368 ASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEE-TTEEEEEECC-
T ss_pred             EEec-CCcEEEEecCC
Confidence            9997 99999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=267.73  Aligned_cols=282  Identities=18%  Similarity=0.306  Sum_probs=218.1

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc--CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      +.+|+||+++ +|++| .|++|+|||.++++++..+.  +|...|.+++|+|++++|++|+.|++|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5789999875 66655 59999999999999887664  67788999999999999999999999999999999988776


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  170 (326)
                      ..+... ...+.....+++.+...     .....+..     ......+..+.+|...+..+.++++++++++++.|++|
T Consensus       106 ~~h~~~-~~~~~~~~~~l~s~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  174 (318)
T 4ggc_A          106 TSHSAR-VGSLSWNSYILSSGSRS-----GHIHHHDV-----RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV  174 (318)
T ss_dssp             ECCSSC-EEEEEEETTEEEEEETT-----SEEEEEET-----TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cCccce-EEEeecCCCEEEEEecC-----CceEeeec-----CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcce
Confidence            543322 22233223333322211     11111111     12234667788999999999999999999999999999


Q ss_pred             EEEECCCCccccc-cccccCcceeeEEEEEcCCCCeE---EEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCe
Q 020461          171 RIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHF---LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH  246 (326)
Q Consensus       171 ~~wd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l---~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  246 (326)
                      ++||+++++.... ......|...|.++.+++++..+   ++++.+++|++||.+.............+..+.++|.++.
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  254 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE  254 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTE
T ss_pred             eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccc
Confidence            9999988765332 22234577889999999887654   4677899999999999998888888888999999999998


Q ss_pred             eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ++++++....            .+++|+...++.+..+.+|.++|++++|+|||++|||||.||+|+||++.+
T Consensus       255 ~~~~sg~~d~------------~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          255 LISGHGFAQN------------QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEEEECTTTC------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             eEEEEEcCCC------------EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            8876543222            245666666677778899999999999999999999999999999999753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-38  Score=278.23  Aligned_cols=291  Identities=19%  Similarity=0.281  Sum_probs=231.0

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      |...|.+++|+|++++|++++.|+.|++|+ .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            788999999999999999999999999999 7788889999999999999999999999999999999999999998877


Q ss_pred             EEecCCC----------------cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461           89 TFNFDSP----------------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (326)
Q Consensus        89 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (326)
                      .+.....                +..+.+.++..+++...+.      .+.++.+.      .+.....+.+|...|.++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~i~~~d~~------~~~~~~~~~~~~~~i~~~  253 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG------AIFVYQIT------EKTPTGKLIGHHGPISVL  253 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGG------CEEEEETT------CSSCSEEECCCSSCEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC------eEEEEEcC------CCceeeeeccCCCceEEE
Confidence            7654332                5667777777766554443      33344332      234556677899999999


Q ss_pred             EEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-
Q 020461          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-  231 (326)
Q Consensus       153 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-  231 (326)
                      +|+|++++|++++.|+.|++||+++++....+   .+|...+.+++++|++ ++++++.|+.|++||+++++++..+.. 
T Consensus       254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~  329 (425)
T 1r5m_A          254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF---YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD  329 (425)
T ss_dssp             EEETTTTEEEEEETTSCEEEECSSSBSCSEEE---CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCccceEe---cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence            99999999999999999999999988766554   3688899999999999 999999999999999999998888764 


Q ss_pred             ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeee--------EeecccceeeeccccccCc--ceeEEEECCCCc
Q 020461          232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA--------KFFDKILQEEIGGVKGHFG--PINALAFNPDGK  301 (326)
Q Consensus       232 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--------~~~~~~~~~~~~~~~~h~~--~v~~v~~s~d~~  301 (326)
                      ...+.+++++|++..+++++.+..  +..+|.+.+....        ..+.......+..+.+|..  .|++++|+|+++
T Consensus       330 ~~~i~~~~~s~~~~~l~~~~~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  407 (425)
T 1r5m_A          330 GVPIFAGRISQDGQKYAVAFMDGQ--VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN  407 (425)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSC--EEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred             CccEEEEEEcCCCCEEEEEECCCe--EEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence            568999999999988777654332  2233322211000        0000001114566778876  999999999999


Q ss_pred             eEEeecCCCcEEEeecC
Q 020461          302 SFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       302 ~lat~s~Dg~i~l~~~~  318 (326)
                      +||+++.||.|++|+++
T Consensus       408 ~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          408 KISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEEESSSCCEEEECC
T ss_pred             eEEEEecCceEEEEeec
Confidence            99999999999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.1e-38  Score=275.94  Aligned_cols=282  Identities=19%  Similarity=0.320  Sum_probs=220.0

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc--CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      .+..|+||++ ++|++| .|++|+|||..+++++..+.  +|...|++++|+|++++|++|+.|++|++||+++++.+..
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            3578999975 577765 58999999999999877654  6778899999999999999999999999999999988877


Q ss_pred             EecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461           90 FNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (326)
Q Consensus        90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  168 (326)
                      +..+ ..+.++.+. +..++..+.+.      .+..+...     .....+..+.+|...+..+.++|++.++++++.|+
T Consensus       185 ~~~h~~~v~~~s~~-~~~l~sgs~d~------~i~~~d~~-----~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~  252 (420)
T 4gga_A          185 MTSHSARVGSLSWN-SYILSSGSRSG------HIHHHDVR-----VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN  252 (420)
T ss_dssp             ECCCSSCEEEEEEE-TTEEEEEETTS------EEEEEETT-----SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EeCCCCceEEEeeC-CCEEEEEeCCC------ceeEeeec-----ccceeeEEecccccceeeeeecCCCCeeeeeeccc
Confidence            6543 333333332 22333222222      22222221     12345677889999999999999999999999999


Q ss_pred             cEEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeE-EE--EeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461          169 IVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHF-LT--GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (326)
Q Consensus       169 ~i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l-~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  244 (326)
                      .|++||..+++... .+.....|...|.+++++|++..+ ++  |+.|++|++||+++++++..+.....+.++.+++++
T Consensus       253 ~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~  332 (420)
T 4gga_A          253 LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY  332 (420)
T ss_dssp             CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTT
T ss_pred             cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCC
Confidence            99999998765432 222345688899999999976544 43  468999999999999999999888899999999999


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +.++++.+....            .+++|+....+.+..+.+|.++|++++|+|||++|||||.||+||||++.+
T Consensus       333 ~~lv~~sg~~d~------------~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          333 KELISGHGFAQN------------QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TEEEEEECTTTC------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             CeEEEEEecCCC------------EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            998877553322            245666666677778899999999999999999999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.2e-38  Score=285.10  Aligned_cols=284  Identities=26%  Similarity=0.466  Sum_probs=230.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|...|.+++|+|++++|++++.|+++++|+. +++.+..+.+|...|.+++|+|+++.+++++.|++|++||...
T Consensus       256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~  334 (577)
T 2ymu_A          256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG  334 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            457789999999999999999999999999999995 5677888999999999999999999999999999999999876


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ........+..++.++.++++...++.+..     +..+.++..       .++.+..+.+|...|.+++|+|++++|++
T Consensus       335 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~v~~~~~-------~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  402 (577)
T 2ymu_A          335 QHLQTLTGHSSSVWGVAFSPDGQTIASASD-----DKTVKLWNR-------NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  402 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEET-------TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             CeeEEEeCCCCCEEEEEECCCCCEEEEEeC-----CCEEEEEcC-------CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            554433344566777888887665554432     122333331       24567778899999999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~  242 (326)
                      ++.|+.|++||.. ++.+..+   .+|...|++++++|++.+|++++.|++|++||.. ++.+..+. +...+.+++|+|
T Consensus       403 ~~~d~~v~~~~~~-~~~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~sp  477 (577)
T 2ymu_A          403 ASDDKTVKLWNRN-GQLLQTL---TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP  477 (577)
T ss_dssp             EETTSEEEEECTT-CCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECT
T ss_pred             EeCCCEEEEEeCC-CCEEEEe---cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcC
Confidence            9999999999964 4444433   4789999999999999999999999999999974 55666654 567899999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ++..+++++.+.              .+++|+. .++.+..+.+|...|++++|+|||++||+++.||.|+||+.+.+
T Consensus       478 d~~~las~~~d~--------------~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~  540 (577)
T 2ymu_A          478 DGQTIASASDDK--------------TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ  540 (577)
T ss_dssp             TSCEEEEEETTS--------------EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC
T ss_pred             CCCEEEEEeCCC--------------EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCC
Confidence            998877664332              2445553 34455667899999999999999999999999999999997644

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.7e-39  Score=279.34  Aligned_cols=292  Identities=14%  Similarity=0.095  Sum_probs=227.6

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC------eeeeccCcccceEEEEEcCC----C---CeEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRD----S---MTLITG   70 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------~~~~~~~h~~~V~~~~~~~~----~---~~l~s~   70 (326)
                      ..+++|.+.|.+++|+|  ++|++|+.|++|++|++.+++      .+..+.+|...|.+++|+|+    +   ++|+++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            46779999999999999  899999999999999999988      78888999999999999999    9   999999


Q ss_pred             eCCCcEEEEEccCCcE-----EEEEecC------CCcceeeee----cCCeE-EEEE-cCccceeceeeeeeeecc----
Q 020461           71 SADQTAKLWNVETGAQ-----LFTFNFD------SPARSVDFA----VGDKL-AVIT-TDPFMELNSAIHVKRIAR----  129 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-~~~~-~~~~~~~~~~~~~~~~~~----  129 (326)
                      +.|+.|++||+.+++.     ...+...      ..+.++.+.    ++... ++++ .+.      .+.+|++..    
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~  161 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG------TTYIWKFHPFADE  161 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS------CEEEEEEESSSSH
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC------cEEEEeCCccccc
Confidence            9999999999998875     5555433      678888898    76655 4443 333      334444432    


Q ss_pred             --CCCCCCCceEEEe-------ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCc---ceeeEEE
Q 020461          130 --DPADQGGESVLIL-------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSL  197 (326)
Q Consensus       130 --~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h---~~~v~~v  197 (326)
                        ..... -.+...+       ..|...|.+++|+|++ .+++++.|+.|++||+++++.+..+....+|   ...+.++
T Consensus       162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          162 SNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             HHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cccceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence              11000 0111133       4578899999999999 9999999999999999988776655432237   8899999


Q ss_pred             EEcCCCCeEEEEeCC---CeEEEeecCCcceEEEEe--------------eccceEEEEeCCCCCeeEEecCCCcceeEe
Q 020461          198 AKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV--------------TERPVNAVTMSPLLDHVVLGGGQDASAVTT  260 (326)
Q Consensus       198 ~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  260 (326)
                      +|+|++.+|++++.|   +.|++||+++++++..+.              +...+.+++|+|++..+++++.+.  .+  
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i--  315 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG--KL--  315 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS--EE--
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC--eE--
Confidence            999999999999999   999999999999988886              456899999999998877665433  23  


Q ss_pred             ecccCceeeeEeecccceeeecccc------cc---------------CcceeEEEECCCC----------ceEEeecCC
Q 020461          261 TDHRAGKFEAKFFDKILQEEIGGVK------GH---------------FGPINALAFNPDG----------KSFSSGGED  309 (326)
Q Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~v~~v~~s~d~----------~~lat~s~D  309 (326)
                                ++|+....+.+..+.      +|               ..+|++++|+|++          .+|++|+.|
T Consensus       316 ----------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d  385 (397)
T 1sq9_A          316 ----------RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD  385 (397)
T ss_dssp             ----------EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred             ----------EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC
Confidence                      334433333334444      55               8999999999998          799999999


Q ss_pred             CcEEEeecCC
Q 020461          310 GYVRLHHFDP  319 (326)
Q Consensus       310 g~i~l~~~~~  319 (326)
                      |.|++|+++.
T Consensus       386 g~i~iw~~~~  395 (397)
T 1sq9_A          386 RSIRWFREAG  395 (397)
T ss_dssp             TEEEEEEEEC
T ss_pred             CcEEEEEcCC
Confidence            9999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-38  Score=272.49  Aligned_cols=303  Identities=20%  Similarity=0.236  Sum_probs=228.5

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd   80 (326)
                      |.++..|..+|.+++|+|++++|++++.|+.|++|+..+++  .+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus         1 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             -CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            45778899999999999999999999999999999999987  8889999999999999999999999999999999999


Q ss_pred             ccCCcEEEEE---ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           81 VETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +.+++.....   .+...+.++.+.+++..++++..     +..+.++.+.....  .........+|...|.++.|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQEND--WWVCKHIKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEEECTT
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCEEEEEEecCCCc--ceeeeeeecccCCCeeEEEEcCC
Confidence            9888755443   24566778888877665554432     12334444432110  00122334678899999999999


Q ss_pred             CcEEEEeeCCCcEEEEECC------------------CCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEee
Q 020461          158 NRTIISAGEDAIVRIWDTE------------------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd  219 (326)
                      +.+|++++.|+.|++||++                  .++.+..+   .+|...+.+++++|++.+|++++.|+.|++||
T Consensus       154 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          154 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec---CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            9999999999999999964                  34443333   36888999999999999999999999999999


Q ss_pred             cCCcceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccC--ceeee------------------Eee---cc
Q 020461          220 ARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA--GKFEA------------------KFF---DK  275 (326)
Q Consensus       220 ~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~------------------~~~---~~  275 (326)
                      +++++++..+.. ..++.+++|+|++..++++ .++.  +..++.+.  +.+..                  +.|   +.
T Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1k8k_C          231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF--PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  307 (372)
T ss_dssp             GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS--CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe--EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence            999999888864 4589999999988765554 3333  23344333  22111                  011   10


Q ss_pred             cceeee------ccc-cccCcceeEEEEC-CCC---ceEEeecCCCcEEEeecCC
Q 020461          276 ILQEEI------GGV-KGHFGPINALAFN-PDG---KSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       276 ~~~~~~------~~~-~~h~~~v~~v~~s-~d~---~~lat~s~Dg~i~l~~~~~  319 (326)
                       .+...      ..+ .+|.++|++++|+ ++|   .+|+||+.||.|++|+++.
T Consensus       308 -~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          308 -KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             -CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             -ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence             01111      222 4899999999966 777   9999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.7e-37  Score=262.65  Aligned_cols=283  Identities=14%  Similarity=0.178  Sum_probs=224.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec---c--CcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---R--GHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~---~--~h~~~V~~~~~~~~~~~l~s~~~d~~i~~   78 (326)
                      ....+|...|.+++|+|++++|++++ |+.|++|++.++.....+   .  +|...|.+++|+|++++|++++.|+.|++
T Consensus        45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            44568999999999999999999998 999999999887643333   2  78999999999999999999999999999


Q ss_pred             EEccCCcE--EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           79 WNVETGAQ--LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        79 wd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      ||+.+++.  ...+. +...+..+.+.++...++++..     +..+.++++.      .++....+.+|...+.++.|+
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~~~d~~------~~~~~~~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-----DGNIAVWDLH------NQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCEEEEEEC
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC-----CCcEEEEeCC------CCceeeeeecccCceEEEEEC
Confidence            99998773  33333 3455677788876655544432     1234444432      345677788899999999999


Q ss_pred             cCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccce
Q 020461          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV  235 (326)
Q Consensus       156 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  235 (326)
                      |+++.|++++.|+.|++||+++++.....    .|...+.+++++|++.++++++.|+.|++||+++++......+...+
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v  268 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV  268 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCE
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeee----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccce
Confidence            99999999999999999999988766544    36678999999999999999999999999999998876555567789


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      .+++++|+++.+++++.+.              .+++|+....+... ...|...|.+++|+|++++|++++.||.|++|
T Consensus       269 ~~~~~~~~~~~l~~~~~dg--------------~i~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          269 LSLKFAYCGKWFVSTGKDN--------------LLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             EEEEECTTSSEEEEEETTS--------------EEEEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             eEEEECCCCCEEEEecCCC--------------cEEEEECCCCeEEE-EecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence            9999999998877665432              23344433333321 23578899999999999999999999999999


Q ss_pred             ec
Q 020461          316 HF  317 (326)
Q Consensus       316 ~~  317 (326)
                      ++
T Consensus       334 ~~  335 (337)
T 1gxr_A          334 EV  335 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-39  Score=279.79  Aligned_cols=304  Identities=15%  Similarity=0.142  Sum_probs=213.9

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd   80 (326)
                      |.+++.|..+|.+++|+|++++|++|+.|+.|++|++.++  +.+..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus         4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            4567778899999999999999999999999999999988  78889999999999999999999999999999999999


Q ss_pred             ccCCc---EEEEE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-CccceeEEEEe
Q 020461           81 VETGA---QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWG  155 (326)
Q Consensus        81 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~  155 (326)
                      +.+++   ....+ .+...+.++.++++...++.+..     +..+.++++....   .......+.+ |...|.+++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~---~~~~~~~~~~~h~~~v~~~~~~  155 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-----ARVISVCYFEQEN---DWWVSKHLKRPLRSTILSLDWH  155 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-----SSCEEECCC--------CCCCEEECSSCCSCEEEEEEC
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-----CCeEEEEEECCcc---cceeeeEeecccCCCeEEEEEc
Confidence            99876   33333 35567788888876654444332     1233444332210   0113455666 99999999999


Q ss_pred             cCCcEEEEeeCCCcEEEEECCCCccc--------------c-ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          156 PLNRTIISAGEDAIVRIWDTETGKLL--------------K-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       156 ~~~~~l~s~~~d~~i~~wd~~~~~~~--------------~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      |++++|++++.|++|++||++..+..              . ..... +|...|.+++|+|++.+|++++.|++|++||+
T Consensus       156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred             CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            99999999999999999998632210              0 11112 78899999999999999999999999999999


Q ss_pred             CCcce----EEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc------------------
Q 020461          221 RTLEL----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL------------------  277 (326)
Q Consensus       221 ~~~~~----~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------  277 (326)
                      +++++    +..+. +...+.+++|+|++..++++ +.+...+...+.....+ ....+...                  
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (377)
T 3dwl_C          235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG-YNYSPILLQGNESGWAH-TRDLDAGTSKTSFTHTGNTGEGREEE  312 (377)
T ss_dssp             CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE-SSSSEEEECCCC---CC-SBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred             CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE-cCCcEEEEEeCCCceEE-Eeeecccccccccccccccccccccc
Confidence            99887    55554 34579999999998766554 44444332221100000 00000000                  


Q ss_pred             ---------------------eeeeccccccCcceeEEEECCCC-c---eEEeecCCCcEEEeec
Q 020461          278 ---------------------QEEIGGVKGHFGPINALAFNPDG-K---SFSSGGEDGYVRLHHF  317 (326)
Q Consensus       278 ---------------------~~~~~~~~~h~~~v~~v~~s~d~-~---~lat~s~Dg~i~l~~~  317 (326)
                                           .........|.+.|+++++.++. .   .|+||+.||.|+||++
T Consensus       313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                 00111223499999999976543 3   6999999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=267.87  Aligned_cols=291  Identities=20%  Similarity=0.287  Sum_probs=223.2

Q ss_pred             eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeecc-------------CcccceEEEEEcC-CCCeEE
Q 020461            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR-------------GHNGAVWCCDVSR-DSMTLI   68 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-------------~h~~~V~~~~~~~-~~~~l~   68 (326)
                      .++++|.+.|.+++|+| ++++|++|+.||.|++|++.+++....+.             +|...|.+++|+| ++++|+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            56788999999999999 99999999999999999999887665543             6999999999999 778999


Q ss_pred             EEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCC---eEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD---KLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        69 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      +++.|+.|++||+.+++....+.....+..+.+.+..   .++++ ..+.      .+.++++.      .+.....+.+
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~------~~~~~~~~~~  184 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLK------SGSCSHILQG  184 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESS------SSCCCEEECC
T ss_pred             EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCC------CcceeeeecC
Confidence            9999999999999999988888877777777776532   23333 3332      33444432      2345667788


Q ss_pred             CccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCcc-cccc------------ccccCcceeeEEEEEcCCCCeEEEEe
Q 020461          145 PQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKL-LKES------------DKETGHKKTITSLAKAADGSHFLTGS  210 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~-~~~~------------~~~~~h~~~v~~v~~s~~~~~l~s~s  210 (326)
                      |...|.+++|+|++. .+++++.|+.|++||+++++. ...+            ....+|...|.+++|+|++.+|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            999999999999998 588999999999999976642 1111            11246889999999999999999999


Q ss_pred             CCCeEEEeecCCcceEEEEeec------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc
Q 020461          211 LDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV  284 (326)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  284 (326)
                      .||.|++||+++++........      ..............+++++. ++             .+++|+....+.+..+
T Consensus       265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY-GS-------------TIAVYTVYSGEQITML  330 (408)
T ss_dssp             TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE-TT-------------EEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec-CC-------------EEEEEECcCCcceeee
Confidence            9999999999988765443211      11111111122222222221 11             3566777667777788


Q ss_pred             cccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          285 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       285 ~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .+|.+.|++++|+|++++|++|+.||.|++|+++..
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            899999999999999999999999999999999765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-38  Score=275.08  Aligned_cols=303  Identities=14%  Similarity=0.216  Sum_probs=226.2

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC----CCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAK   77 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~   77 (326)
                      +.....|...|.+++|+|++++|++++.|+.|++|++.+    .+.+..+.+|.+.|.+++|+|+ +++|++++.|++|+
T Consensus        60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            334456889999999999999999999999999999987    4578889999999999999998 88999999999999


Q ss_pred             EEEccCCc------EEEEE----ecCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC-
Q 020461           78 LWNVETGA------QLFTF----NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-  145 (326)
Q Consensus        78 ~wd~~~~~------~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (326)
                      +||+.+++      .....    .+...+.++.+.++ ..+++.+..     +..+.++++.      .+.....+..+ 
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~------~~~~~~~~~~~~  208 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----SNFASIWDLK------AKKEVIHLSYTS  208 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----SSCEEEEETT------TTEEEEEECCCC
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----CCCEEEEECC------CCCcceEEeccc
Confidence            99998876      33222    24456778888876 444444332     1234444432      23445555554 


Q ss_pred             -----ccceeEEEEecCC-cEEEEeeCCC---cEEEEECCCCc-ccccccccc-CcceeeEEEEEcC-CCCeEEEEeCCC
Q 020461          146 -----QGRINRAVWGPLN-RTIISAGEDA---IVRIWDTETGK-LLKESDKET-GHKKTITSLAKAA-DGSHFLTGSLDK  213 (326)
Q Consensus       146 -----~~~i~~~~~~~~~-~~l~s~~~d~---~i~~wd~~~~~-~~~~~~~~~-~h~~~v~~v~~s~-~~~~l~s~s~dg  213 (326)
                           ...|.+++|+|++ .++++++.|+   .|++||+++++ ....   .. +|...|.+++|+| ++.+|++++.|+
T Consensus       209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~l~s~~~dg  285 (416)
T 2pm9_A          209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---LNQGHQKGILSLDWCHQDEHLLLSSGRDN  285 (416)
T ss_dssp             CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC---CCSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred             cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE---eecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence                 7889999999997 5899999998   99999998863 3332   23 6889999999999 999999999999


Q ss_pred             eEEEeecCCcceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeE--------------eecccc-
Q 020461          214 SAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK--------------FFDKIL-  277 (326)
Q Consensus       214 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------------~~~~~~-  277 (326)
                      +|++||+++++++..+.. ...+.+++|+|++..++++++.|+. +..+|.........              +|.... 
T Consensus       286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (416)
T 2pm9_A          286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR  364 (416)
T ss_dssp             EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCCCCSSCC--------------------
T ss_pred             CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCCCCCcccccccccccCCcccccccccc
Confidence            999999999999888864 5679999999998555555555543 33444332221110              010000 


Q ss_pred             ---ee-----eeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          278 ---QE-----EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       278 ---~~-----~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                         ..     .+.....|..++.+++|+|||++||+|+.||+|+||++..+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence               00     00112237788899999999999999999999999998865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-38  Score=276.97  Aligned_cols=293  Identities=13%  Similarity=0.159  Sum_probs=206.7

Q ss_pred             eecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCC---CCe---eeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN---GER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (326)
Q Consensus         7 ~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~---~~~---~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w   79 (326)
                      .+|.+.|.+++|+| ++++|++|+.|++|+||++.+   +..   ...+ +|.+.|.+++|+|++++|++++.|++|++|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  138 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL  138 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            78999999999999 999999999999999999876   432   2222 589999999999999999999999999999


Q ss_pred             Ecc---CCcEEEEEecC-------------CCcceee--eecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE
Q 020461           80 NVE---TGAQLFTFNFD-------------SPARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (326)
Q Consensus        80 d~~---~~~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (326)
                      |+.   +++........             ..+.++.  +.++...++++..     +..+.+|++.      .+..+..
T Consensus       139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~------~~~~~~~  207 (437)
T 3gre_A          139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN-----LSRVIIFDIR------TLERLQI  207 (437)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----TSEEEEEETT------TCCEEEE
T ss_pred             EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----CCeEEEEeCC------CCeeeEE
Confidence            995   55544332211             1122222  1233333333322     2344555442      3456777


Q ss_pred             ecc--CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE----cCCCCeEEEEeCCCeE
Q 020461          142 LKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK----AADGSHFLTGSLDKSA  215 (326)
Q Consensus       142 ~~~--~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~----s~~~~~l~s~s~dg~i  215 (326)
                      +.+  |.+.|++++|+|++.+|++|+.|++|++||+++++.+..+.  .+|...|.++++    ++++.+|++|+.||+|
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence            777  88999999999999999999999999999999887766543  257789999955    4578899999999999


Q ss_pred             EEeecCCcceEEEEe---------------------------eccceEEEEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461          216 KLWDARTLELIKTYV---------------------------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (326)
Q Consensus       216 ~iwd~~~~~~~~~~~---------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~  268 (326)
                      ++||+++++++..+.                           +...+.+++++ ++..+++ ++.|+ .+..||.+.+..
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s-~~~d~-~i~~wd~~~~~~  362 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT-DEATS-SIVMFSLNELSS  362 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE-EGGGT-EEEEEETTCGGG
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe-cCCCC-eEEEEECCCccc
Confidence            999999999888776                           22346778888 4444444 44443 244555444332


Q ss_pred             eeEeec-------------------------ccceeeeccccccCcceeEEEECCC--CceEEeecCCCcEEEee
Q 020461          269 EAKFFD-------------------------KILQEEIGGVKGHFGPINALAFNPD--GKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       269 ~~~~~~-------------------------~~~~~~~~~~~~h~~~v~~v~~s~d--~~~lat~s~Dg~i~l~~  316 (326)
                      ...+..                         ............|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            211111                         1111112223459999999999988  88999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=255.21  Aligned_cols=282  Identities=20%  Similarity=0.231  Sum_probs=225.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|.+.|.+++| |++++|++++.||.|++|++.+++....+..|.+.|.+++|+|+++++++++.|+.|++|++..
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~   90 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA   90 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence            568999999999999 9999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             C---cEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CC
Q 020461           84 G---AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LN  158 (326)
Q Consensus        84 ~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  158 (326)
                      .   +....+. +..++.++.+ .++.++..+.+..      +.+++        .......+..|...+.++.+.| ++
T Consensus        91 ~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~------i~~~d--------~~~~~~~~~~~~~~v~~~~~~~~~~  155 (313)
T 3odt_A           91 TSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKT------AKVWK--------EGSLVYNLQAHNASVWDAKVVSFSE  155 (313)
T ss_dssp             CTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSE------EEEEE--------TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred             cCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCC------EEEEc--------CCcEEEecccCCCceeEEEEccCCC
Confidence            4   3333332 3455666666 3445554444432      33333        2356677888999999999988 88


Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEE
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (326)
                      ..+++++.|+.|++||..  +....+.  ..|...+.+++++|++. +++++.||.|++||+++++++..+. +...+.+
T Consensus       156 ~~l~~~~~d~~i~i~d~~--~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  230 (313)
T 3odt_A          156 NKFLTASADKTIKLWQND--KVIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC  230 (313)
T ss_dssp             TEEEEEETTSCEEEEETT--EEEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CEEEEEECCCCEEEEecC--ceEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence            999999999999999943  3333322  23788999999999998 9999999999999999999998886 5678999


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      ++++|++ .++++ +.++             .+++|+....+....+..|...|.+++|+|+++ +++++.||.|++|++
T Consensus       231 ~~~~~~~-~l~~~-~~dg-------------~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          231 IKLLPNG-DIVSC-GEDR-------------TVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EEECTTS-CEEEE-ETTS-------------EEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred             EEEecCC-CEEEE-ecCC-------------EEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence            9999998 44444 3333             245566555666666778989999999999998 667999999999999


Q ss_pred             CCCce
Q 020461          318 DPDYF  322 (326)
Q Consensus       318 ~~~~~  322 (326)
                      +..-.
T Consensus       295 ~~~~~  299 (313)
T 3odt_A          295 EKSRW  299 (313)
T ss_dssp             CGGGC
T ss_pred             CCCce
Confidence            87543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-37  Score=265.83  Aligned_cols=256  Identities=18%  Similarity=0.252  Sum_probs=202.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecC--CCCeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~--~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~w   79 (326)
                      .++++|...|.+++|+|++++|++|+.|+.|+||++.  +++.+..+.+|.+.|.+++|+++  +++|++++.|++|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            6789999999999999999999999999999999998  55777889999999999999977  8999999999999999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--  157 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  157 (326)
                      |+.+++..                                                  ....+.+|...|.+++|+|+  
T Consensus        85 d~~~~~~~--------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~  114 (379)
T 3jrp_A           85 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY  114 (379)
T ss_dssp             EEETTEEE--------------------------------------------------EEEEECCCSSCEEEEEECCGGG
T ss_pred             EcCCCcee--------------------------------------------------EeeeecCCCcceEEEEeCCCCC
Confidence            98765421                                                  12223457788999999999  


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-------------CCCeEEEEeCCCeEEEeecCCcc
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-------------DGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      +.+|++++.|+.|++||++++...... ...+|...|.+++|+|             ++.+|++++.|+.|++||+++++
T Consensus       115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  193 (379)
T 3jrp_A          115 GPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  193 (379)
T ss_dssp             CSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred             CCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence            899999999999999999877443322 2346889999999999             69999999999999999998765


Q ss_pred             eE----EEEe-eccceEEEEeCCC---CCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461          225 LI----KTYV-TERPVNAVTMSPL---LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (326)
Q Consensus       225 ~~----~~~~-~~~~~~~~~~s~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  296 (326)
                      ..    ..+. +...+.+++|+|+   +..+++++ .|+. +..+|.+.+..       .....+.....|...|++++|
T Consensus       194 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~dg~-i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~  264 (379)
T 3jrp_A          194 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS-QDRT-CIIWTQDNEQG-------PWKKTLLKEEKFPDVLWRASW  264 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE-TTSC-EEEEEESSTTS-------CCEEEESSSSCCSSCEEEEEE
T ss_pred             cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe-CCCE-EEEEeCCCCCc-------cceeeeeccccCCCcEEEEEE
Confidence            33    3332 4567999999999   55555544 3332 22333222110       001223334558889999999


Q ss_pred             CCCCceEEeecCCCcEEEeecCC
Q 020461          297 NPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       297 s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +|++++|++++.||.|++|+++.
T Consensus       265 s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          265 SLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CSSSCCEEEEESSSSEEEEEEEE
T ss_pred             cCCCCEEEEecCCCcEEEEeCCC
Confidence            99999999999999999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-36  Score=264.44  Aligned_cols=289  Identities=18%  Similarity=0.240  Sum_probs=224.3

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      +|...+.+.+++++++.+++++.|+.|++|+..+++....+.. |...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  168 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK  168 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence            5555544433444456688899999999999999998877766 888999999999999999999999999999999988


Q ss_pred             EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      +..+. +...+.++.+ .+..++..+.+.      .+.++++..     .......+.+|.+.|.++.|+|++.+|++|+
T Consensus       169 ~~~~~~~~~~v~~~~~-~~~~l~~~~~dg------~i~i~d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          169 LRTMAGHQARVGCLSW-NRHVLSSGSRSG------AIHHHDVRI-----ANHQIGTLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             EEEECCCSSCEEEEEE-ETTEEEEEETTS------EEEEEETTS-----SSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEecCCCCceEEEEE-CCCEEEEEcCCC------CEEEEeccc-----CcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            87775 3455666666 344444444332      344454431     2356777889999999999999999999999


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-EEEEe--CCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~  242 (326)
                      .|+.|++||+++++....+   .+|...|.+++|+|++.. +++|+  .|+.|++||+++++++..+.....+.+++|+|
T Consensus       237 ~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~  313 (401)
T 4aez_A          237 NDNVVQIWDARSSIPKFTK---TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP  313 (401)
T ss_dssp             TTSCEEEEETTCSSEEEEE---CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS
T ss_pred             CCCeEEEccCCCCCccEEe---cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC
Confidence            9999999999987766544   368889999999997755 55544  79999999999999999998888999999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      ++..++++.+.....+..+|.+.+.          ......+.+|.+.|.+++|+|++.+|++++.||.|++|++....
T Consensus       314 ~~~~l~~~~g~~dg~i~v~~~~~~~----------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          314 HSKEIMSTHGFPDNNLSIWSYSSSG----------LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             SSSEEEEEECTTTCEEEEEEEETTE----------EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             CCCeEEEEeecCCCcEEEEecCCcc----------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            9999888754333333333322211          22233456899999999999999999999999999999998654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.1e-37  Score=255.22  Aligned_cols=252  Identities=23%  Similarity=0.358  Sum_probs=202.2

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceecee
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      +...++++|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+.. ..++..+.+.++...++.+..     +..
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-----d~~   78 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-----DFR   78 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-----TSE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC-----CCE
Confidence            34567899999999999999999999999999999999999988877764 566788888876665554432     234


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~  201 (326)
                      +.+|++.      .++.+..+++|...|.+++|+|++++|++|+.|++|++||++++.....  ...+|...|.+++|+|
T Consensus        79 i~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--~~~~h~~~v~~v~~~p  150 (304)
T 2ynn_A           79 IRVFNYN------TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TFEGHEHFVMCVAFNP  150 (304)
T ss_dssp             EEEEETT------TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE--EECCCCSCEEEEEECT
T ss_pred             EEEEECC------CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh--hhcccCCcEEEEEECC
Confidence            5555542      3567788899999999999999999999999999999999987644322  2347999999999999


Q ss_pred             -CCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCC-eeEEecCCCcceeEeecccCceeeeEeecccc
Q 020461          202 -DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL  277 (326)
Q Consensus       202 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  277 (326)
                       ++..|++|+.|++|++||+++......+.  ....+..+.++|..+ ..+++++.|+             .+++|+...
T Consensus       151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-------------~i~iWd~~~  217 (304)
T 2ynn_A          151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-------------TIKIWDYQT  217 (304)
T ss_dssp             TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS-------------EEEEEETTT
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC-------------eEEEEeCCC
Confidence             67899999999999999998877666654  235688899987533 2344444443             356677666


Q ss_pred             eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          278 QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       278 ~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ++.+..+.+|...|.+++|+|++.+||+|+.||+|+||+....
T Consensus       218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            6667778899999999999999999999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-36  Score=258.34  Aligned_cols=273  Identities=18%  Similarity=0.291  Sum_probs=211.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcC--CCCeEEEEeCCCcEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~d~~i~   77 (326)
                      .++.+|.+.|++++|+|++++|++|+.|+.|++|++.++    +....+.+|.+.|.+++|+|  ++++|++++.|++|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            577899999999999999999999999999999999876    45677889999999999999  689999999999999


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +||+++++...      .                                     .........+.+|...|.+++|+|+
T Consensus        85 vwd~~~~~~~~------~-------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~  121 (351)
T 3f3f_A           85 LWEEDPDQEEC------S-------------------------------------GRRWNKLCTLNDSKGSLYSVKFAPA  121 (351)
T ss_dssp             EEEECTTSCTT------S-------------------------------------SCSEEEEEEECCCSSCEEEEEECCG
T ss_pred             EEecCCCcccc------c-------------------------------------ccCcceeeeecccCCceeEEEEcCC
Confidence            99997754200      0                                     0001234455678899999999999


Q ss_pred             --CcEEEEeeCCCcEEEEECCCCcccccccc----------ccCcceeeEEEEEcCC---CCeEEEEeCCCeEEEeecCC
Q 020461          158 --NRTIISAGEDAIVRIWDTETGKLLKESDK----------ETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       158 --~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------~~~h~~~v~~v~~s~~---~~~l~s~s~dg~i~iwd~~~  222 (326)
                        +.+|++++.|+.|++||+++++....+..          ..+|...+.+++++|+   +.++++++.|+.+.+|+...
T Consensus       122 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~  201 (351)
T 3f3f_A          122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD  201 (351)
T ss_dssp             GGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred             CCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence              99999999999999999988776543321          1257788999999997   99999999999999888887


Q ss_pred             cce--EEEEe-eccceEEEEeCCCCC---eeEEecCCCcceeEeecccCcee----------------------------
Q 020461          223 LEL--IKTYV-TERPVNAVTMSPLLD---HVVLGGGQDASAVTTTDHRAGKF----------------------------  268 (326)
Q Consensus       223 ~~~--~~~~~-~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~d~~~~~~----------------------------  268 (326)
                      ++.  +..+. +...+.+++|+|++.   .++++++.|+. +..+|.+.+..                            
T Consensus       202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
T 3f3f_A          202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS  280 (351)
T ss_dssp             SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-----------------------------
T ss_pred             CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence            765  33333 456899999999983   34444444432 33444433210                            


Q ss_pred             ------eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          269 ------EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       269 ------~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                            ...+|+....+.+..+.+|.+.|++++|+|++++||+|+.||.|+||++...
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                  1122223334556677899999999999999999999999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-36  Score=298.96  Aligned_cols=305  Identities=20%  Similarity=0.326  Sum_probs=245.7

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|.+.|++++|+|++++|++|+.|++|++|+..+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEe-cCCCcceeeeecC--CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461           84 GAQLFTFN-FDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      ++.+..+. +..++.++.+.+.  ..+++.+..     +..+.+|++.      .+.....+.+|.+.|.+++|+|+++.
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-----d~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN-----DFFLKLWDLN------QKECRNTMFGHTNSVNHCRFSPDDEL  757 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEET-----TSCEEEEETT------SSSEEEEECCCSSCEEEEEECSSTTE
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeC-----CCeEEEEECC------CcchhheecCCCCCEEEEEEecCCCE
Confidence            99888775 4556777888763  333333322     2234455442      34577788899999999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCcccccccc----------------------------------------------------cc
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDK----------------------------------------------------ET  188 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~----------------------------------------------------~~  188 (326)
                      +++++.||+|++||+.+++....+..                                                    ..
T Consensus       758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence            99999999999999987654322110                                                    12


Q ss_pred             CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccC--
Q 020461          189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA--  265 (326)
Q Consensus       189 ~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~--  265 (326)
                      +|...+.+++++|++.++++++.||.|++||+.++..+..+. +...+.+++|+|++..+++++.+....  .||.+.  
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~--vw~~~~~~  915 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR--VWETKKVC  915 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE--EEEHHHHH
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE--EEEccccc
Confidence            677889999999999999999999999999999998888775 456799999999998887776544332  222110  


Q ss_pred             -----------------------------------------------------------------ceeeeEeecccceee
Q 020461          266 -----------------------------------------------------------------GKFEAKFFDKILQEE  280 (326)
Q Consensus       266 -----------------------------------------------------------------~~~~~~~~~~~~~~~  280 (326)
                                                                                       ....+++|+......
T Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~  995 (1249)
T 3sfz_A          916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV  995 (1249)
T ss_dssp             SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred             eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce
Confidence                                                                             001234555555555


Q ss_pred             eccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      ...+.+|.+.|++++|+|+|++|++++.||.|++|++....
T Consensus       996 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             EEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred             eeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence            56677899999999999999999999999999999987643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.4e-37  Score=262.26  Aligned_cols=301  Identities=16%  Similarity=0.160  Sum_probs=218.3

Q ss_pred             eeeeecCCceeEEEEccCCCEE-EeecC---CCCeEEEecCCCCeeeec-cCcccceEEEEEcCC---CCeEEEEeCCCc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLL-FSCAK---DHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRD---SMTLITGSADQT   75 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l-~s~~~---d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~---~~~l~s~~~d~~   75 (326)
                      .++++|...|.+++|+|+++.+ ++++.   |+.|++|++.+++..... .+|...|.+++|+|+   +++|++++.|+.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            4567899999999999999755 55655   999999999998876443 378999999999998   699999999999


Q ss_pred             EEEEEccCCc-EEEEEe-cCCCcceeee------ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           76 AKLWNVETGA-QLFTFN-FDSPARSVDF------AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        76 i~~wd~~~~~-~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                      |++||+.+++ ....+. +...+.++.+      +++...++.+..     +..+.+|++...     ......+..|.+
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-----d~~i~vwd~~~~-----~~~~~~~~~~~~  161 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-----DGTVKVWDPRQK-----DDPVANMEPVQG  161 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-----TSCEEEECTTSC-----SSCSEEECCCTT
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-----CCeEEEEeCCCC-----CCcceeccccCC
Confidence            9999999887 555554 4455666644      444444443322     223444544321     113444444433


Q ss_pred             ----ceeEEE----EecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC---CCCeEEEEeCCCeEE
Q 020461          148 ----RINRAV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---DGSHFLTGSLDKSAK  216 (326)
Q Consensus       148 ----~i~~~~----~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~---~~~~l~s~s~dg~i~  216 (326)
                          .+.++.    |+|++.++++++.|+.|++||+++++....    ..|...+.+++|+|   ++.+|++++.||.|+
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----TNIKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee----cCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence                788888    788999999999999999999998876432    35778999999999   999999999999999


Q ss_pred             EeecCCcceEEEEe------eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeec-------ccceeeecc
Q 020461          217 LWDARTLELIKTYV------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD-------KILQEEIGG  283 (326)
Q Consensus       217 iwd~~~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~  283 (326)
                      +||+++++++..+.      +...+.+++++|++..++++++.|+. +..+|.+..........       ....+.+..
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccccccceeec
Confidence            99999877665543      45689999999998855555555542 33344332211100000       001134556


Q ss_pred             ccccCcceeEEEECCCCceEE-eecCCCcEEEeecCC
Q 020461          284 VKGHFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDP  319 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~~la-t~s~Dg~i~l~~~~~  319 (326)
                      +.+|.++|++++|+|++++|+ +|+.||.|+||++..
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            778999999999999999998 899999999999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4e-37  Score=263.31  Aligned_cols=292  Identities=14%  Similarity=0.221  Sum_probs=220.4

Q ss_pred             eeeeecCCceeEEEEccC----CCEEEeecCCCCeEEEecCCCCeeeeccC-----cccceEEEEEcCC----CCeEEEE
Q 020461            4 ILMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRD----SMTLITG   70 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-----h~~~V~~~~~~~~----~~~l~s~   70 (326)
                      .++.+|..+|.+++|+|+    ...+++++.++.|++|+..+++.+..+..     |.+.|.+++|+|+    +++|+++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            456689999999999984    45666677777999999998887766654     5577999999998    6799999


Q ss_pred             eCCCcEEEEEccCCcEEEEEe-cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe---ccC
Q 020461           71 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGP  145 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  145 (326)
                      +.|++|++||+.+++.+..+. +..++.++.+.+ +...++++..     +..+.+|++.      .+.....+   .+|
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~------~~~~~~~~~~~~~~  160 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-----DHALRLWNIQ------TDTLVAIFGGVEGH  160 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-----TSCEEEEETT------TTEEEEEECSTTSC
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEEee------cCeEEEEecccccc
Confidence            999999999999999888776 567788899987 5555444332     2234455442      23455555   689


Q ss_pred             ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccc-------------------------cccCcceeeEEEEEc
Q 020461          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-------------------------KETGHKKTITSLAKA  200 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------------------~~~~h~~~v~~v~~s  200 (326)
                      ...|.++.|+|++..|++++.|+.|++||+++++....+.                         ...+|...|.+++++
T Consensus       161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (366)
T 3k26_A          161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL  240 (366)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence            9999999999999999999999999999998876543321                         112388899999998


Q ss_pred             CCCCeEEEEeCCCeEEEeecCCcce--------------EEEEe-eccceEEEEeCCC--CCeeEEecCCCcceeEeecc
Q 020461          201 ADGSHFLTGSLDKSAKLWDARTLEL--------------IKTYV-TERPVNAVTMSPL--LDHVVLGGGQDASAVTTTDH  263 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~~--------------~~~~~-~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~d~  263 (326)
                        +.++++++.|+.|++||+++++.              +..+. +...+.+++++|+  +..+++++.+..  +..+|.
T Consensus       241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~--i~vwd~  316 (366)
T 3k26_A          241 --GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK--LYVWDL  316 (366)
T ss_dssp             --TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC--EEEEEC
T ss_pred             --CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc--EEEEEC
Confidence              67999999999999999988654              44443 3456888999998  777666544332  233333


Q ss_pred             cCceeeeEeecccceeeecccccc--CcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          264 RAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      +.+..        .......+.+|  ...|++++|+|++++|++|+.||.|++|++.
T Consensus       317 ~~~~~--------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          317 EVEDP--------HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CSSSG--------GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCC--------ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            22211        01122245556  7899999999999999999999999999974

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-37  Score=273.06  Aligned_cols=261  Identities=11%  Similarity=0.089  Sum_probs=194.7

Q ss_pred             eeeecCCceeEEEEccC------CCEEEeecCCCCeEEEecCCCCe-----------eeeccCcccceEEEEEcCCCCeE
Q 020461            5 LMKGHERPLTYLKYNKD------GDLLFSCAKDHTPTVWFADNGER-----------LGTYRGHNGAVWCCDVSRDSMTL   67 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~------~~~l~s~~~d~~v~iw~~~~~~~-----------~~~~~~h~~~V~~~~~~~~~~~l   67 (326)
                      .+.+|.+.|.+++|+|+      +.+||+++.|++|+||++.++..           ..++.+|...|.+++|+++ ..|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence            36678899999999997      57999999999999999987642           2367889999999999986 489


Q ss_pred             EEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        68 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                      ++|+.||+|++||+++++.                                                   +...+.+|.+
T Consensus       281 asgs~DgtV~lWD~~~~~~---------------------------------------------------~~~~~~~H~~  309 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEV---------------------------------------------------PSFYDQVHDS  309 (524)
T ss_dssp             EEEETTSEEEEEETTBCSS---------------------------------------------------CSEEEECSSS
T ss_pred             EEEeCCCEEEEEECCCCCC---------------------------------------------------ceEEeecccc
Confidence            9999999999999975421                                                   1123457888


Q ss_pred             ceeEE--EEecCC-cEEEEeeCCCcEEEEECCCCccccccccccCcc--eeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          148 RINRA--VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       148 ~i~~~--~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      .|.++  .|+|++ .+|+||+.|++|+|||+++++....+.   +|.  ..|.+++|+|++..+++++.|++|++||+++
T Consensus       310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred             cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence            89998  578887 899999999999999998876654432   343  2478999999999999999999999999999


Q ss_pred             cceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCce----------------ee---------eEeecc-
Q 020461          223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK----------------FE---------AKFFDK-  275 (326)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~----------------~~---------~~~~~~-  275 (326)
                      +.++..+. +...+.+++|+|++..+++++. |+. +..+|...+.                +.         +.+++. 
T Consensus       387 ~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~-Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~  464 (524)
T 2j04_B          387 AFAVHPLVSRETTITAIGVSRLHPMVLAGSA-DGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSY  464 (524)
T ss_dssp             TTCCEEEEECSSCEEEEECCSSCCBCEEEET-TTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCC
T ss_pred             cccceeeecCCCceEEEEeCCCCCeEEEEEC-CCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCc
Confidence            98877664 5678999999999988776554 332 2222211100                00         111110 


Q ss_pred             ------cceeeeccccccCcceeEEEECCCCc---eEEeecCCCcEEEeecCCCce
Q 020461          276 ------ILQEEIGGVKGHFGPINALAFNPDGK---SFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       276 ------~~~~~~~~~~~h~~~v~~v~~s~d~~---~lat~s~Dg~i~l~~~~~~~~  322 (326)
                            ..+..+..+.+|..+|++|+|||++.   .+|+|+.||+||||+++-+-|
T Consensus       465 ~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~~  520 (524)
T 2j04_B          465 EVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEHH  520 (524)
T ss_dssp             CCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC--
T ss_pred             eecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccccc
Confidence                  11334556789999999999999964   899999999999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=250.56  Aligned_cols=235  Identities=22%  Similarity=0.356  Sum_probs=203.1

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      .+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.|++|++||++++
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~  154 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG  154 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           85 AQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      +....+.. ...+.++.++++...++.+..     +..+.++++.      .++.+..+++|..+|.+++|+|++++|++
T Consensus       155 ~~~~~~~~~~~~v~~~~~spdg~~lasg~~-----dg~i~iwd~~------~~~~~~~~~~h~~~v~~l~~spd~~~l~s  223 (321)
T 3ow8_A          155 KKEYSLDTRGKFILSIAYSPDGKYLASGAI-----DGIINIFDIA------TGKLLHTLEGHAMPIRSLTFSPDSQLLVT  223 (321)
T ss_dssp             SEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TTEEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred             ceeEEecCCCceEEEEEECCCCCEEEEEcC-----CCeEEEEECC------CCcEEEEEcccCCceeEEEEcCCCCEEEE
Confidence            88776654 345677888887766655432     2234455442      34677788999999999999999999999


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~  242 (326)
                      |+.|++|++||+++++....+   .+|...|.+++|+|++.+|++|+.|++|++||+++++++..+. +...+.+++|+|
T Consensus       224 ~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLAGTL---SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             ECTTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EcCCCeEEEEECCCcceeEEE---cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence            999999999999988766544   4799999999999999999999999999999999999998875 456899999999


Q ss_pred             CCCeeEEecCC
Q 020461          243 LLDHVVLGGGQ  253 (326)
Q Consensus       243 ~~~~~~~~~~~  253 (326)
                      ++..+++++.+
T Consensus       301 ~g~~l~s~~~d  311 (321)
T 3ow8_A          301 NGSKIVSVGDD  311 (321)
T ss_dssp             TSSEEEEEETT
T ss_pred             CCCEEEEEeCC
Confidence            98887766543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-35  Score=258.08  Aligned_cols=235  Identities=24%  Similarity=0.387  Sum_probs=201.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++++.++.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~  223 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT  223 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC-----
Q 020461           84 GAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-----  157 (326)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----  157 (326)
                      ++.+..+.. ...+..+.+.+++.+++.+..     +..+.+|++.      .+.....+.+|...|.++.|+|+     
T Consensus       224 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-----D~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~  292 (410)
T 1vyh_C          224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSN-----DQTVRVWVVA------TKECKAELREHRHVVECISWAPESSYSS  292 (410)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred             CcEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCeEEEEECC------CCceeeEecCCCceEEEEEEcCcccccc
Confidence            998877754 445667777776665554432     2334455442      24566778899999999999996     


Q ss_pred             ---------------CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          158 ---------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       158 ---------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                                     +.+|++|+.|++|++||+++++++..+   .+|...|++++|+|++.+|++|+.|++|++||+++
T Consensus       293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~---~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL---VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE---ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                           568999999999999999998876654   47999999999999999999999999999999999


Q ss_pred             cceEEEEe-eccceEEEEeCCCCCeeEEecC
Q 020461          223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      ++++..+. +...+.+++|+|++..+++++.
T Consensus       370 ~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             SCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             CceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence            99888875 4568999999999987776544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-36  Score=285.43  Aligned_cols=240  Identities=14%  Similarity=0.132  Sum_probs=185.5

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ....||...|.+++|+|++++||+|+.||+|+||+..+.+....+ .|..+|.+++|+| +++|++++.|++|++||+.+
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            556799999999999999999999999999999999887776554 4788999999999 88999999999999999999


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceE-------EEeccCccceeEEEEec
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-------LILKGPQGRINRAVWGP  156 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~  156 (326)
                      ++.+..+.+...+.++.++++...++++..     +..+.+|++......  ...+       ...++|.++|.+++|+|
T Consensus        89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~-----dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQ-----NGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             CSEEEEEECSSCEEEEECCTTCSEEEEEET-----TSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             CcEEEEEcCCCCEEEEEECCCCCEEEEEcC-----CCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEcc
Confidence            998888877778888899887766555432     223444443221000  0000       12367889999999999


Q ss_pred             CC-cEEEEeeCCCcEEEEECCCCccccccccc---------------cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          157 LN-RTIISAGEDAIVRIWDTETGKLLKESDKE---------------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       157 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------------~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      ++ ..+++|+.|++| +||+++++....+...               ..|...|++++|+|+|.+|++|+.||+|++||+
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            64 689999999999 9999988766554321               235678999999999999999999999999999


Q ss_pred             CCcceEEEEe-------------------eccceEEEEeC----CCCCeeEEecCC
Q 020461          221 RTLELIKTYV-------------------TERPVNAVTMS----PLLDHVVLGGGQ  253 (326)
Q Consensus       221 ~~~~~~~~~~-------------------~~~~~~~~~~s----~~~~~~~~~~~~  253 (326)
                      ++++++....                   +...+.+++|+    |++..++++++.
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            9988775411                   12368899995    444455555543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.4e-36  Score=253.40  Aligned_cols=286  Identities=16%  Similarity=0.194  Sum_probs=224.9

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      -|..++.+++|+|||++++++..++.+.+|............+|.+.|.+++|+|+++++++++ |+.|++||+.+++..
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            3556789999999999999998888887776555544445558999999999999999999998 999999999876532


Q ss_pred             ---EEE---ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           88 ---FTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        88 ---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                         ..+   .+..++.++.+.++...++++..     +..+.++++...    .......+.+|...+.++.|+|+++.+
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l  156 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-----ASTLSIWDLAAP----TPRIKAELTSSAPACYALAISPDSKVC  156 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEES-----SSEEEEEECCCC------EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcC-----CCcEEEEECCCC----CcceeeecccCCCceEEEEECCCCCEE
Confidence               222   24556777888887665554332     123444443221    122456678899999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeC
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s  241 (326)
                      ++++.|+.|++||+++++....+   .+|...+.+++++|++.+|++++.|+.|++||+++++.+..+.....+.+++++
T Consensus       157 ~~~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s  233 (337)
T 1gxr_A          157 FSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC  233 (337)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             EEEeCCCcEEEEeCCCCceeeee---ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEEC
Confidence            99999999999999988766554   358889999999999999999999999999999999999888888889999999


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      |+++.+++++.+..              +++|+....+. ..+..|...|.+++|+|++++|++++.||.|++|+++...
T Consensus       234 ~~~~~l~~~~~~~~--------------i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          234 PTGEWLAVGMESSN--------------VEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             TTSSEEEEEETTSC--------------EEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCEEEEEcCCCc--------------EEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            99988877654332              23333322222 2356788999999999999999999999999999988654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=263.48  Aligned_cols=293  Identities=13%  Similarity=0.192  Sum_probs=222.7

Q ss_pred             cCCceeEEEEccCCC-EEEee----------cCCCCeEEEecCCCC---eeeeccCcccceEEEEEcCCCCeEEEEeCCC
Q 020461            9 HERPLTYLKYNKDGD-LLFSC----------AKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQ   74 (326)
Q Consensus         9 h~~~i~~~~~s~~~~-~l~s~----------~~d~~v~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~   74 (326)
                      +...+.+++|+|+++ +|+++          +.|+.|+||++.+++   .+..+ .|...|.+++|+|++++|++++.|+
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            445789999999987 99999          899999999998875   33333 5889999999999999999999999


Q ss_pred             cEEEEEccC----CcEEEEEe-cCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCC---CCceEEEeccC
Q 020461           75 TAKLWNVET----GAQLFTFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQ---GGESVLILKGP  145 (326)
Q Consensus        75 ~i~~wd~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  145 (326)
                      .|++||+.+    .+....+. +..++.++.+.++ ..+++.+..     +..+.+|++.......   .........+|
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-----NGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-----SSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-----CCeEEEEECCCCccccccccccccccccCC
Confidence            999999987    33554443 4567888899875 444444332     2234445443221000   00111234678


Q ss_pred             ccceeEEEEecC-CcEEEEeeCCCcEEEEECCCCccccccccc---cCcceeeEEEEEcCCC-CeEEEEeCCC---eEEE
Q 020461          146 QGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADG-SHFLTGSLDK---SAKL  217 (326)
Q Consensus       146 ~~~i~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~-~~l~s~s~dg---~i~i  217 (326)
                      ...|.+++|+|+ +..|++++.|+.|++||+++++....+...   .+|...+.+++|+|++ .++++++.|+   .|++
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence            899999999999 689999999999999999988776654321   1237889999999997 6899999999   9999


Q ss_pred             eecCCc-ceEEEEe--eccceEEEEeCC-CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeE
Q 020461          218 WDARTL-ELIKTYV--TERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA  293 (326)
Q Consensus       218 wd~~~~-~~~~~~~--~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  293 (326)
                      ||++++ +++..+.  +...+.+++|+| ++..+++++ .|+             .+++|+....+.+..+.+|...|.+
T Consensus       245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~dg-------------~v~~wd~~~~~~~~~~~~~~~~v~~  310 (416)
T 2pm9_A          245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG-RDN-------------TVLLWNPESAEQLSQFPARGNWCFK  310 (416)
T ss_dssp             EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE-SSS-------------EEEEECSSSCCEEEEEECSSSCCCC
T ss_pred             EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe-CCC-------------CEEEeeCCCCccceeecCCCCceEE
Confidence            999986 5566654  567899999999 665555544 333             2456666566666777889999999


Q ss_pred             EEECCCC-ceEEeecCCCcEEEeecCCCc
Q 020461          294 LAFNPDG-KSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       294 v~~s~d~-~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      ++|+|++ .+|++++.||.|+||++....
T Consensus       311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          311 TKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            9999999 899999999999999987643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=257.01  Aligned_cols=283  Identities=15%  Similarity=0.189  Sum_probs=217.4

Q ss_pred             eecCCceeEEEEccCCC-EEEeecCCCCeEEEec----CCCC------eeeeccC----------cccceEEEEEcCCCC
Q 020461            7 KGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFA----DNGE------RLGTYRG----------HNGAVWCCDVSRDSM   65 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~----~~~~------~~~~~~~----------h~~~V~~~~~~~~~~   65 (326)
                      ..|..+|.+++|+|+++ +|++|+.|+.|++|++    .+++      ....+..          |.+.|.+++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34568999999999999 9999999999999999    8887      4444443          688999999999999


Q ss_pred             eEEEEeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        66 ~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      +|++++.|+.|++|| .+++....+. +..++.++.+.+++..++.+..     +..+.++++.      .+.....+..
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~------~~~~~~~~~~  189 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-----ENVTILWNVI------SGTVMQHFEL  189 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET-----TCCEEEEETT------TTEEEEEECC
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec-----CCeEEEEECC------CCcEEEEeec
Confidence            999999999999999 5566666554 4567788888877665544332     1233344332      2334445555


Q ss_pred             Cccc---------------eeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461          145 PQGR---------------INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG  209 (326)
Q Consensus       145 ~~~~---------------i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~  209 (326)
                      +...               +.++.|+|++ .+++++.|+.|++||+++++....+   .+|...+.+++++|++.+|+++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          190 KETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL---IGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             C---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE---CCCSSCEEEEEEETTTTEEEEE
T ss_pred             cccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee---ccCCCceEEEEECCCCCEEEEE
Confidence            5544               8899999974 5888999999999999988766544   3688999999999999999999


Q ss_pred             eCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC
Q 020461          210 SLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF  288 (326)
Q Consensus       210 s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~  288 (326)
                      +.|+.|++||+++++.+..+. +...+.+++++|++ .++++ +.++             .+++|+....+.+..+..|.
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~~d~-------------~i~i~d~~~~~~~~~~~~~~  330 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISC-SMDG-------------SVRLWSLKQNTLLALSIVDG  330 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEE-ETTS-------------EEEEEETTTTEEEEEEECTT
T ss_pred             cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEE-eCCC-------------cEEEEECCCCcEeEecccCC
Confidence            999999999999998888875 56789999999988 44444 3333             24455555555566677889


Q ss_pred             cceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          289 GPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       289 ~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .+|.+++|+|++++|++++.||.|++|+++..
T Consensus       331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred             ccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            99999999999999999999999999998653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.4e-36  Score=256.72  Aligned_cols=285  Identities=13%  Similarity=0.159  Sum_probs=205.5

Q ss_pred             CceeEEEEccCCCEEEeecCCC-------CeEEEecCCCCee----------eeccCcccceEEEEEcCCCCeEEEE---
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDH-------TPTVWFADNGERL----------GTYRGHNGAVWCCDVSRDSMTLITG---   70 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~-------~v~iw~~~~~~~~----------~~~~~h~~~V~~~~~~~~~~~l~s~---   70 (326)
                      -||++++|+||+++|++|+.|.       .|++|++..+...          ..+.+|...|.+++++  ++.++++   
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4799999999999999998654       4999998765321          2467788889888775  4455554   


Q ss_pred             --------eCCCcEEEEEccCCcEEEEE----ec------CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCC
Q 020461           71 --------SADQTAKLWNVETGAQLFTF----NF------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA  132 (326)
Q Consensus        71 --------~~d~~i~~wd~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (326)
                              +.|+++|+|++.+......+    +.      +..++.+.|+|+.+.+++++..   .+..+++|++.    
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~---~d~~i~iwd~~----  165 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK---VPAIMRIIDPS----  165 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC---SSCEEEEEETT----
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC---CCCEEEEeECC----
Confidence                    46888999998765432211    11      1224567888877665443321   12345556543    


Q ss_pred             CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC
Q 020461          133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD  212 (326)
Q Consensus       133 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d  212 (326)
                        .+..+..+. |.+.|.+++|+|+++++++++.++ +.+|+..+++..... ...+|...+.+++|+|++.++++++.|
T Consensus       166 --~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~v~fspdg~~l~~~s~d  240 (365)
T 4h5i_A          166 --DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARK-TDFDKNWSLSKINFIADDTVLIAASLK  240 (365)
T ss_dssp             --TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEE-CCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred             --CCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeee-ecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence              234555554 778899999999999999998655 667777666654332 234688999999999999999999988


Q ss_pred             C----eEEEeecCCcceE----EEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461          213 K----SAKLWDARTLELI----KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (326)
Q Consensus       213 g----~i~iwd~~~~~~~----~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (326)
                      +    .+++||+......    ..+. +...+.+++|+|++..+++++. |+             .+++|+...++.+..
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-D~-------------~V~iwd~~~~~~~~~  306 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-DN-------------SIALVKLKDLSMSKI  306 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-TS-------------CEEEEETTTTEEEEE
T ss_pred             CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC-CC-------------EEEEEECCCCcEEEE
Confidence            7    6888998765432    2222 3457999999999988776644 32             245666666665555


Q ss_pred             -ccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461          284 -VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       284 -~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~  323 (326)
                       +.+|..+|++|+|||||++|||||.|++||||++++++-.
T Consensus       307 ~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~  347 (365)
T 4h5i_A          307 FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYAN  347 (365)
T ss_dssp             ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred             ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence             4789999999999999999999999999999999887754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.1e-35  Score=268.53  Aligned_cols=296  Identities=15%  Similarity=0.201  Sum_probs=217.0

Q ss_pred             eeeeecCC---ceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeec-c---CcccceEEEEEcCCCCeEEEEeCCCc
Q 020461            4 ILMKGHER---PLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTY-R---GHNGAVWCCDVSRDSMTLITGSADQT   75 (326)
Q Consensus         4 ~~~~~h~~---~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~-~---~h~~~V~~~~~~~~~~~l~s~~~d~~   75 (326)
                      ..+.+|..   .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+ .   +|.+.|.+++|+ ++++|++++.|+.
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~  275 (615)
T 1pgu_A          197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT  275 (615)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred             eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence            35677888   9999999999 999999999999999999999999998 6   899999999999 9999999999999


Q ss_pred             EEEEEccCCcEEEEEecC-----CCcceeeeecCCeEEEEEcCccceecee-----------------------------
Q 020461           76 AKLWNVETGAQLFTFNFD-----SPARSVDFAVGDKLAVITTDPFMELNSA-----------------------------  121 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  121 (326)
                      |++||+.+++.+..+...     .....+.+..+..++....+..+.+...                             
T Consensus       276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~  355 (615)
T 1pgu_A          276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY  355 (615)
T ss_dssp             EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEET
T ss_pred             EEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECC
Confidence            999999999888777654     2333444444444544444332211110                             


Q ss_pred             ---eeeeee--------------ccCCCC------C--------------------------------------------
Q 020461          122 ---IHVKRI--------------ARDPAD------Q--------------------------------------------  134 (326)
Q Consensus       122 ---~~~~~~--------------~~~~~~------~--------------------------------------------  134 (326)
                         +.+|++              ......      .                                            
T Consensus       356 dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  435 (615)
T 1pgu_A          356 DGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF  435 (615)
T ss_dssp             TSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETT
T ss_pred             CCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEecc
Confidence               000000              000000      0                                            


Q ss_pred             CCceEEEeccCccceeEEEEecCCcEEEEeeC-CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC
Q 020461          135 GGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (326)
Q Consensus       135 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg  213 (326)
                      .++.+..+ .+...+.+++++  ++++++++. |+.|++||+.+++...  ....+|...|++++++|++.+|++++.||
T Consensus       436 ~~~~~~~~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  510 (615)
T 1pgu_A          436 TGDIIKSV-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMG  510 (615)
T ss_dssp             TCCEEEEE-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCceeeec-ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCC
Confidence            00001111 133445556665  667777777 8888888887665432  23357889999999999999999999999


Q ss_pred             eEEEeecCCcceEEEEe--eccceEEEEeCC----------CCCeeEEecCCCcceeEeecccCceeeeEeecccce-ee
Q 020461          214 SAKLWDARTLELIKTYV--TERPVNAVTMSP----------LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EE  280 (326)
Q Consensus       214 ~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~----------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~  280 (326)
                      .|++||+++++++..+.  +...+.+++|+|          ++..+++++.+.              .+++|+.... +.
T Consensus       511 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg--------------~i~iw~~~~~~~~  576 (615)
T 1pgu_A          511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT--------------NIFIYSVKRPMKI  576 (615)
T ss_dssp             CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS--------------CEEEEESSCTTCC
T ss_pred             eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC--------------cEEEEECCCCcee
Confidence            99999999999988875  667899999999          877777664433              2345554443 45


Q ss_pred             eccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +..+.+|.+.|++++|+|+++ |++++.||+|++|+++.+
T Consensus       577 ~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~  615 (615)
T 1pgu_A          577 IKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE  615 (615)
T ss_dssp             EEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred             chhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence            566789999999999999999 999999999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-37  Score=273.08  Aligned_cols=254  Identities=13%  Similarity=0.075  Sum_probs=187.9

Q ss_pred             cCCceeEEEEccCC---------CEEEe-------------------ecCCCCeEEEecCCCCee----eeccCcccceE
Q 020461            9 HERPLTYLKYNKDG---------DLLFS-------------------CAKDHTPTVWFADNGERL----GTYRGHNGAVW   56 (326)
Q Consensus         9 h~~~i~~~~~s~~~---------~~l~s-------------------~~~d~~v~iw~~~~~~~~----~~~~~h~~~V~   56 (326)
                      +...|.+++|+|++         ++||+                   ++.|++|+||++.+++..    .++.+|.+.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            56677777777775         45554                   668899999999887642    34667889999


Q ss_pred             EEEEcCC------CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccC
Q 020461           57 CCDVSRD------SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD  130 (326)
Q Consensus        57 ~~~~~~~------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (326)
                      +++|+|+      +++|++++.|++|++||+.+++...                ...              .        
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~----------------~~~--------------~--------  253 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV----------------HVF--------------K--------  253 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS----------------SEE--------------E--------
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc----------------ccc--------------e--------
Confidence            9999996      5799999999999999997653210                000              0        


Q ss_pred             CCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEE--EEcCCC-CeEE
Q 020461          131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL--AKAADG-SHFL  207 (326)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v--~~s~~~-~~l~  207 (326)
                         ....+...+.+|...|.+++|+|. ..|++|+.||+|++||+++++....  ...+|...|+++  ++++++ .+|+
T Consensus       254 ---~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~--~~~~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          254 ---MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSF--YDQVHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             ---CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSE--EEECSSSCEEEEEEECCTTSCCEEE
T ss_pred             ---eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceE--EeecccccEEEEEEEcCCCCCeEEE
Confidence               000123456788899999999986 4899999999999999987643221  234799999999  578887 8999


Q ss_pred             EEeCCCeEEEeecCCcceEEEEeec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc
Q 020461          208 TGSLDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV  284 (326)
Q Consensus       208 s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  284 (326)
                      ||+.|++|++||+++++++..+...   ..+.+++|+|++..+++++.++.              +++|+......+..+
T Consensus       328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~t--------------v~lwd~~~~~~~~~l  393 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS--------------LRAVPSRAAFAVHPL  393 (524)
T ss_dssp             EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSE--------------EEEEETTCTTCCEEE
T ss_pred             EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCc--------------EEEEECcccccceee
Confidence            9999999999999998876665422   24788999999887666544331              344444333334456


Q ss_pred             cccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          285 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       285 ~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .+|.+.|++|+|||+|++||+|+.||+|+||+....
T Consensus       394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            789999999999999999999999999999987543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-34  Score=255.32  Aligned_cols=288  Identities=21%  Similarity=0.347  Sum_probs=220.7

Q ss_pred             eeeeecCCce-eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i-~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      ..+++|...+ .++.|  ++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|++++ .+++|+.|++|++||++
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            5788999885 55555  67899999999999999999999999999999999999999887 89999999999999999


Q ss_pred             CCcEEEEEe-cCCCcceeeeec--CCeEEE-EEcCccceeceeeeeeeeccCCC-----------------CCCCceEEE
Q 020461           83 TGAQLFTFN-FDSPARSVDFAV--GDKLAV-ITTDPFMELNSAIHVKRIARDPA-----------------DQGGESVLI  141 (326)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~  141 (326)
                      +++.+..+. +..++.++.+.+  +...++ ++.+..      +.+|++.....                 .........
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC------EEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc------EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            998887776 456777777774  334443 333332      33333322110                 011123567


Q ss_pred             eccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      +.+|...+.++  ++++.++++|+.|+.|++||+++++.+..+   .+|...|.+++++|++.++++|+.||+|++||++
T Consensus       266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  340 (464)
T ss_dssp             ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            78888888876  677899999999999999999988876654   4688999999999999999999999999999999


Q ss_pred             CcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461          222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (326)
Q Consensus       222 ~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~  300 (326)
                      +++++..+. +...+.++++++  +.++++ +.|+.             +++|+.......... .|...+..++|+|++
T Consensus       341 ~~~~~~~~~~h~~~v~~~~~~~--~~l~s~-s~dg~-------------v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~  403 (464)
T 3v7d_B          341 NGELMYTLQGHTALVGLLRLSD--KFLVSA-AADGS-------------IRGWDANDYSRKFSY-HHTNLSAITTFYVSD  403 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECS--SEEEEE-ETTSE-------------EEEEETTTCCEEEEE-ECTTCCCEEEEEECS
T ss_pred             CCcEEEEEeCCCCcEEEEEEcC--CEEEEE-eCCCc-------------EEEEECCCCceeeee-cCCCCccEEEEEeCC
Confidence            999998885 456788999874  445444 44432             233443332222111 255678889999999


Q ss_pred             ceEEeecCCCcEEEeecCCCcee
Q 020461          301 KSFSSGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       301 ~~lat~s~Dg~i~l~~~~~~~~~  323 (326)
                      .++++|+ ||.|++|++....+-
T Consensus       404 ~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          404 NILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEE
T ss_pred             CEEEEec-CCeEEEEECCCCcEE
Confidence            9999999 999999999876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.9e-35  Score=275.21  Aligned_cols=291  Identities=14%  Similarity=0.203  Sum_probs=238.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|.+.|.+++|+|++++|++++.||.|+||+..+++.+..+.+|.++|.+++|+|++++|++++.|+.|++||+.+
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~   86 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEE
Q 020461           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI  161 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  161 (326)
                      ++.+..+. +...+.++.|++++..++.+..     +..+.+|.+..     .......+.+|...|.++.|+| ++..|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A           87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEGGG-----TSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             CcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEECCC-----CceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence            99888776 4567888899987765544332     23445555432     1245667789999999999999 78899


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEE
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  238 (326)
                      ++++.|++|++||+.+++....+.  ..|...+.+++++|  ++.++++++.||.|++||+++++++..+. +...+.++
T Consensus       157 ~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          157 ASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (814)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            999999999999998776654433  24557899999999  99999999999999999999999888876 45689999


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce-EEeecCCCcEEEeec
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS-FSSGGEDGYVRLHHF  317 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-lat~s~Dg~i~l~~~  317 (326)
                      +++|+++.+++++.++              .+++|+....+....+..|...|++++|+|++.. +++++.|+.+.+|++
T Consensus       235 ~~~~~~~~l~~~~~dg--------------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          235 VFHPTLPIIISGSEDG--------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             EECSSSSEEEEEETTS--------------CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             EEcCCCCEEEEEeCCC--------------eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence            9999998777665433              2345555555555667778899999999999874 244455777888876


Q ss_pred             CCC
Q 020461          318 DPD  320 (326)
Q Consensus       318 ~~~  320 (326)
                      ...
T Consensus       301 ~~~  303 (814)
T 3mkq_A          301 GND  303 (814)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1e-35  Score=260.72  Aligned_cols=274  Identities=19%  Similarity=0.259  Sum_probs=208.6

Q ss_pred             eeeeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCC----------CCeeeeccCcccceEEEEEcCCCC-eEEEEe
Q 020461            4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN----------GERLGTYRGHNGAVWCCDVSRDSM-TLITGS   71 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~----------~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~   71 (326)
                      ..+.+|.+.|++++|+|+ +++|++++.||.|++|++.+          ...+..+.+|...|.+++|+|+++ +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            556789999999999997 68999999999999999986          567778899999999999999988 999999


Q ss_pred             CCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        72 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      .||+|++||+.++....        .                       .              ......+.+|...|.+
T Consensus       202 ~dg~i~vwd~~~~~~~~--------~-----------------------~--------------~~~~~~~~~h~~~v~~  236 (430)
T 2xyi_A          202 DDHTICLWDINATPKEH--------R-----------------------V--------------IDAKNIFTGHTAVVED  236 (430)
T ss_dssp             TTSCEEEEETTSCCBGG--------G-----------------------E--------------EECSEEECCCSSCEEE
T ss_pred             CCCeEEEEeCCCCCCCC--------c-----------------------e--------------eccceeecCCCCCEee
Confidence            99999999997642100        0                       0              0012234578889999


Q ss_pred             EEEec-CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCC-cceEEE
Q 020461          152 AVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART-LELIKT  228 (326)
Q Consensus       152 ~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~-~~~~~~  228 (326)
                      ++|+| .+..|++++.|+.|++||++++...........|...|++++|+|++. .+++|+.||+|++||+++ .+++..
T Consensus       237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~  316 (430)
T 2xyi_A          237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS  316 (430)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred             eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence            99999 567999999999999999987632222222347889999999999987 588999999999999998 456666


Q ss_pred             Ee-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee--cccceeeeccccccCcceeEEEECCCCc-eEE
Q 020461          229 YV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF--DKILQEEIGGVKGHFGPINALAFNPDGK-SFS  304 (326)
Q Consensus       229 ~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~la  304 (326)
                      +. +...+.+++|+|+++.++++++.++. +..+|.+........-  .....+.+....+|...|++++|+|++. +|+
T Consensus       317 ~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  395 (430)
T 2xyi_A          317 FESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC  395 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred             eecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence            65 56789999999999876666555542 3333332211000000  0000133445678999999999999999 899


Q ss_pred             eecCCCcEEEeecCCCcee
Q 020461          305 SGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       305 t~s~Dg~i~l~~~~~~~~~  323 (326)
                      +++.||.|+||+++...++
T Consensus       396 s~s~dg~i~iw~~~~~~~~  414 (430)
T 2xyi_A          396 SVSEDNIMQVWQMAENVYN  414 (430)
T ss_dssp             EEETTSEEEEEEECHHHHC
T ss_pred             EEECCCCEEEeEccccccc
Confidence            9999999999999876543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-35  Score=259.23  Aligned_cols=281  Identities=14%  Similarity=0.162  Sum_probs=217.7

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE-e
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-N   91 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~   91 (326)
                      +++++|+|++++|++++.|+.+++|+..+++....+..| ..+....|++++++|++++.|+.|++||+.+++....+ .
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            457899999999999999999999999988877777776 45555678999999999999999999999988877665 4


Q ss_pred             cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  171 (326)
                      +...+.++.|++++..++.+..     +..+.+|++.      .+.....+.+|...|.+++|+|+++.|++++.|++|+
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVK------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR  206 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCC------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            5677888999987665554432     2345555543      2345667789999999999999999999999999999


Q ss_pred             EEECCCCccccccccccCcc---------------------eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          172 IWDTETGKLLKESDKETGHK---------------------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       172 ~wd~~~~~~~~~~~~~~~h~---------------------~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      +||+++++....+.....|.                     ..+.+++|+|++.+|++|+.||.|++||+++++.+..+.
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            99999988776654333333                     445555668999999999999999999999998888775


Q ss_pred             e--ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce-eeeccccc-cCcceeEEEECCCCceEEee
Q 020461          231 T--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EEIGGVKG-HFGPINALAFNPDGKSFSSG  306 (326)
Q Consensus       231 ~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~-h~~~v~~v~~s~d~~~lat~  306 (326)
                      .  ...+.+++|+|++..++++++.++.             +++|+.... ..+..+.+ |...|.++.+ |++++|+++
T Consensus       287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~  352 (420)
T 3vl1_A          287 SKFTCSCNSLTVDGNNANYIYAGYENGM-------------LAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSS  352 (420)
T ss_dssp             CTTSSCEEEEEECSSCTTEEEEEETTSE-------------EEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEE
T ss_pred             cccCCCceeEEEeCCCCCEEEEEeCCCe-------------EEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEe
Confidence            3  4679999999999844444444432             334443322 11333444 6677888865 578999999


Q ss_pred             cCCCcEEEeecCC
Q 020461          307 GEDGYVRLHHFDP  319 (326)
Q Consensus       307 s~Dg~i~l~~~~~  319 (326)
                      +.||+|++|++..
T Consensus       353 ~~d~~v~iw~~~~  365 (420)
T 3vl1_A          353 GFDTSIKLDIISD  365 (420)
T ss_dssp             TTTEEEEEEEECC
T ss_pred             cCCccEEEEeccC
Confidence            9999999999876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.6e-35  Score=253.07  Aligned_cols=278  Identities=15%  Similarity=0.157  Sum_probs=190.3

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC------CCcEEEEEccCCcE-
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA------DQTAKLWNVETGAQ-   86 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~-   86 (326)
                      ..+.+.+++.+ +.++.+.....|++....    ..+|.+.|.+++|+|||++|++||.      |++|++|+..++.. 
T Consensus         9 sg~d~g~~~~~-~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~   83 (357)
T 4g56_B            9 SGVDLGTENLY-FQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN   83 (357)
T ss_dssp             ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred             cCCCCCccceE-EecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence            45556666655 445556778999875433    3579999999999999999999997      77899998876543 


Q ss_pred             ----EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           87 ----LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        87 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                          .....+...+.++.|.+++.+++++.+..      +++|++......  ........+|.+.|.+++|+|++++|+
T Consensus        84 ~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~------v~lWd~~~~~~~--~~~~~~~~~h~~~V~~v~~spdg~~l~  155 (357)
T 4g56_B           84 ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGA------VELWEILEKESL--LVNKFAKYEHDDIVKTLSVFSDGTQAV  155 (357)
T ss_dssp             GGGCSEEEECSSCEEEEEEETTTEEEEEETTSC------EEEC----------CCCCEEECCCSSCEEEEEECSSSSEEE
T ss_pred             eeEecccCCCCCCEEEEEEcCCCCEEEEECCCE------EEEeecccccee--EEEeeccCCCCCCEEEEEECCCCCEEE
Confidence                22334566788889999888877665543      444544321110  112234558999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceEEEEe---eccceEEE
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAV  238 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~  238 (326)
                      +|+.|++|++||+++++.+..+   .+|...|.++++++++. ++++++.|++|++||+++++++..+.   ....+.++
T Consensus       156 sgs~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v  232 (357)
T 4g56_B          156 SGGKDFSVKVWDLSQKAVLKSY---NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV  232 (357)
T ss_dssp             EEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccch
Confidence            9999999999999998876654   47899999999999875 78999999999999999988776653   34568999


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-ceEEeecCCCcEEEeec
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-KSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-~~lat~s~Dg~i~l~~~  317 (326)
                      +|+|++..++++++.++             .+++|+....+.+..+.+|...|++++|+|++ ++||+|+.||+|+||++
T Consensus       233 ~~sp~~~~~la~g~~d~-------------~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          233 TWHPEKDDTFACGDETG-------------NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             EECTTSTTEEEEEESSS-------------CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             hhhhcccceEEEeeccc-------------ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            99999877776665554             24455555555556678899999999999987 57999999999999998


Q ss_pred             CCC
Q 020461          318 DPD  320 (326)
Q Consensus       318 ~~~  320 (326)
                      +..
T Consensus       300 ~~~  302 (357)
T 4g56_B          300 DFS  302 (357)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.5e-36  Score=293.55  Aligned_cols=280  Identities=18%  Similarity=0.228  Sum_probs=239.6

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      .+...+.+++|+|+++++++|+.||.|++|+..+++....+.+|.+.|.+++|+|+++++++++.|++|++||+.+++..
T Consensus       959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A          959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp             ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred             cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      ....+...+..+.+.++..++..+.+.      .+.+|++.      .+.....+.+|.+.|.+++|+|+++.+++++.|
T Consensus      1039 ~~~~~~~~v~~~~~~~~~~l~~~~~dg------~v~vwd~~------~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A         1039 FLQAHQETVKDFRLLQDSRLLSWSFDG------TVKVWNVI------TGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp             CCBCCSSCEEEEEECSSSEEEEEESSS------EEEEEETT------TTCCCEEEECCSSCCCCEEECSSSSSCEEECCS
T ss_pred             EEecCCCcEEEEEEcCCCcEEEEECCC------cEEEEECC------CCceeEEEcccCCcEEEEEECCCCCEEEEEcCC
Confidence            655566777788888877776665543      34445442      345667788999999999999999999999999


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE----------eeccceEE
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY----------VTERPVNA  237 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------~~~~~~~~  237 (326)
                      ++|++||+.+++....+   .+|...|++++|+|++.+|++|+.||+|++||+.+++++..+          .+...+.+
T Consensus      1107 ~~v~iwd~~~~~~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A         1107 KTAKIWSFDLLSPLHEL---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp             SCCCEECSSSSSCSBCC---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred             CcEEEEECCCcceeeee---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence            99999999988776554   478999999999999999999999999999999998877654          24567999


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      ++|+|++..++++++                .+++|+...++.+..+.+|.+.|++++|+|||++|++++.||.|++|++
T Consensus      1184 l~fs~dg~~l~s~~g----------------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A         1184 VCFSPDSKTLVSAGG----------------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp             EEECTTSSCEEEESS----------------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred             EEECCCCCEEEECCC----------------eEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence            999999998877642                2456666666667778889999999999999999999999999999987


Q ss_pred             C
Q 020461          318 D  318 (326)
Q Consensus       318 ~  318 (326)
                      .
T Consensus      1248 ~ 1248 (1249)
T 3sfz_A         1248 L 1248 (1249)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-36  Score=278.34  Aligned_cols=256  Identities=18%  Similarity=0.251  Sum_probs=199.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecC--CCCeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~--~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~~w   79 (326)
                      .++.+|.+.|++++|+|++++|++|+.||+|++|++.  ++..+..+.+|.++|.+++|+|+  +++|++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            5789999999999999999999999999999999998  55678889999999999999988  8999999999999999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--  157 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  157 (326)
                      |+.+++..                                                  ......+|...|.++.|+|+  
T Consensus        83 d~~~~~~~--------------------------------------------------~~~~~~~h~~~V~~v~~sp~~~  112 (753)
T 3jro_A           83 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY  112 (753)
T ss_dssp             EEETTEEE--------------------------------------------------EEEEECCCSSCEEEEEECCGGG
T ss_pred             ECCCCccc--------------------------------------------------ccccccCCCCCeEEEEECCCCC
Confidence            98765321                                                  12234567788999999999  


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-------------CCCeEEEEeCCCeEEEeecCCcc
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-------------DGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      +..+++|+.||.|++||++++...... ...+|...|.+++++|             ++.++++|+.||+|++||++++.
T Consensus       113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~  191 (753)
T 3jro_A          113 GPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (753)
T ss_dssp             CSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred             CCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence            899999999999999999877443322 2347889999999999             58999999999999999998873


Q ss_pred             ----eEEEEe-eccceEEEEeCCC---CCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461          225 ----LIKTYV-TERPVNAVTMSPL---LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (326)
Q Consensus       225 ----~~~~~~-~~~~~~~~~~s~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  296 (326)
                          +...+. +...+.+++|+|+   +..+++++. |+. +..+|.+.+..       ..........+|.+.|++++|
T Consensus       192 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~-I~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~l~~  262 (753)
T 3jro_A          192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRT-CIIWTQDNEQG-------PWKKTLLKEEKFPDVLWRASW  262 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-SSC-EEEEEESSSSS-------CCBCCBSSSSCCSSCCCCEEE
T ss_pred             ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-CCE-EEEecCCCCCC-------cceeEEeccCCCCCceEEEEE
Confidence                333333 4568999999999   555555543 332 22333222110       001123334568899999999


Q ss_pred             CCCCceEEeecCCCcEEEeecCC
Q 020461          297 NPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       297 s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +|+|.+|++|+.||.|++|+++.
T Consensus       263 spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          263 SLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CTTTCCEEEECSSSCEECCBCCS
T ss_pred             cCCCCEEEEEcCCCEEEEEecCC
Confidence            99999999999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=280.79  Aligned_cols=297  Identities=14%  Similarity=0.165  Sum_probs=206.3

Q ss_pred             eeecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCc------------------ccceEEEEEcCCCCe
Q 020461            6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGH------------------NGAVWCCDVSRDSMT   66 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h------------------~~~V~~~~~~~~~~~   66 (326)
                      +++|..+|.+++|+|+ +.+|++|+.|+.| +||+.+++.+..+..|                  ...|.+++|+|++++
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            4779999999999996 4789999999999 9999999888877665                  578999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCcEEEEEec-------------------CCCcceeeeec----CC-eEEEEEcCc------cc
Q 020461           67 LITGSADQTAKLWNVETGAQLFTFNF-------------------DSPARSVDFAV----GD-KLAVITTDP------FM  116 (326)
Q Consensus        67 l~s~~~d~~i~~wd~~~~~~~~~~~~-------------------~~~~~~~~~~~----~~-~~~~~~~~~------~~  116 (326)
                      |++++.|++|++||+++++.+....+                   ..++..+.|.+    ++ .+++++...      ..
T Consensus       226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v  305 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL  305 (902)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred             EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence            99999999999999999887654211                   11345566643    22 333333111      00


Q ss_pred             -eec----------------------------------------------------------------eeeeeeeeccCC
Q 020461          117 -ELN----------------------------------------------------------------SAIHVKRIARDP  131 (326)
Q Consensus       117 -~~~----------------------------------------------------------------~~~~~~~~~~~~  131 (326)
                       ...                                                                ..+.++.+.   
T Consensus       306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~---  382 (902)
T 2oaj_A          306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP---  382 (902)
T ss_dssp             EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT---
T ss_pred             EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC---
Confidence             000                                                                000111100   


Q ss_pred             CCCCCceE-----------------------------------------EEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461          132 ADQGGESV-----------------------------------------LILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (326)
Q Consensus       132 ~~~~~~~~-----------------------------------------~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  170 (326)
                         .+...                                         ..+.+|...+..++|+|+++.|++|+.|++|
T Consensus       383 ---~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtV  459 (902)
T 2oaj_A          383 ---SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSV  459 (902)
T ss_dssp             ---TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEE
T ss_pred             ---CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcE
Confidence               00000                                         0123444455556678999999999999999


Q ss_pred             EEEECCCCccccc--ccc------ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc------------------
Q 020461          171 RIWDTETGKLLKE--SDK------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE------------------  224 (326)
Q Consensus       171 ~~wd~~~~~~~~~--~~~------~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~------------------  224 (326)
                      ++||+.++.....  +..      ..+|...|.+++|+||+.+||+|+.||+|++||+.+++                  
T Consensus       460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~  539 (902)
T 2oaj_A          460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFR  539 (902)
T ss_dssp             EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CC
T ss_pred             EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeee
Confidence            9999988743210  100      12788999999999999999999999999999998662                  


Q ss_pred             ---------------------------eEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461          225 ---------------------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI  276 (326)
Q Consensus       225 ---------------------------~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (326)
                                                 ++..+. +...+.+++|+|++ .++++ +.|+ .+..||.+.....   +   
T Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg-s~D~-tv~lwd~~~~~~~---~---  610 (902)
T 2oaj_A          540 RFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA-YAAG-SLMLIDRRGPAII---Y---  610 (902)
T ss_dssp             SCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE-ETTS-EEEEEETTTTEEE---E---
T ss_pred             eccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE-eCCC-cEEEEECCCCeEE---E---
Confidence                                       244443 56789999999999 55554 4443 2333443222110   0   


Q ss_pred             ceeeecccc-ccCcceeEEEEC-----CCC---ceEEeecCCCcEEEeecCC
Q 020461          277 LQEEIGGVK-GHFGPINALAFN-----PDG---KSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       277 ~~~~~~~~~-~h~~~v~~v~~s-----~d~---~~lat~s~Dg~i~l~~~~~  319 (326)
                       ...+..+. +|.+.|++|+|+     |||   .+|++|+.||+|++|++.|
T Consensus       611 -~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p  661 (902)
T 2oaj_A          611 -MENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILP  661 (902)
T ss_dssp             -EEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred             -EeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEec
Confidence             00123454 899999999999     885   8999999999999999844

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=255.96  Aligned_cols=292  Identities=14%  Similarity=0.167  Sum_probs=209.1

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-----------eeeeccCcc------------cceEEEEEcCCC-
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------RLGTYRGHN------------GAVWCCDVSRDS-   64 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-----------~~~~~~~h~------------~~V~~~~~~~~~-   64 (326)
                      |.+.|.+++|+|+|++|++|+.||.|+||++.+++           ....+.+|.            +.|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            56889999999999999999999999999998877           577889998            889999999998 


Q ss_pred             -CeEEEEeCCCcEEEEEccCCcEEE---------------------------------------EE--ecCCCcceeeee
Q 020461           65 -MTLITGSADQTAKLWNVETGAQLF---------------------------------------TF--NFDSPARSVDFA  102 (326)
Q Consensus        65 -~~l~s~~~d~~i~~wd~~~~~~~~---------------------------------------~~--~~~~~~~~~~~~  102 (326)
                       ..|++++.|++|++||+.+++...                                       .+  .+...+.++.++
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             789999999999999997644321                                       11  245667788888


Q ss_pred             cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE-------EeccCccceeEEEEecCC-cEEEEeeCCCcEEEEE
Q 020461          103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-------ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWD  174 (326)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd  174 (326)
                      ++...++.+.+.      .+.+|++..     ......       .+.+|...|.+++|+|++ ..|++|+.|++|++||
T Consensus       187 ~~~~~l~s~~d~------~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          187 SDYETYLSADDL------RINLWHLEI-----TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             TTSSEEEEECSS------EEEEEETTE-----EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEeCCC------eEEEEECCC-----CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence            877766655333      344444321     011122       256889999999999998 8999999999999999


Q ss_pred             CCCCcccc-ccccccCcce------------eeEEEEEcCCCCeEEEEeCCCeEEEeecCC-cceEEEEeeccc------
Q 020461          175 TETGKLLK-ESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVTERP------  234 (326)
Q Consensus       175 ~~~~~~~~-~~~~~~~h~~------------~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~------  234 (326)
                      +++++... ......+|..            .|.+++|+|++.+|++++. +.|++||+++ ++++..+.....      
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~  334 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC  334 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence            99877521 1112234544            8999999999999999999 9999999997 777777754332      


Q ss_pred             ----------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc---------------------eeeecc
Q 020461          235 ----------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---------------------QEEIGG  283 (326)
Q Consensus       235 ----------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------~~~~~~  283 (326)
                                +..++|+|++..+++++. |+ .+..||...+... .+.....                     ......
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~-dg-~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSY-NN-FFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVD  411 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECS-TT-EEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred             ccccccccccceEEEECCCCCEEEEecc-CC-EEEEEEcCCCcce-eeeecccccccccccCCccccccCCccccccccc
Confidence                      223899999988866544 33 2445555444321 1100000                     000000


Q ss_pred             ccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      ...+...|..++|+|++.+||+++.++ +.+|.
T Consensus       412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             ccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence            113456799999999999999999876 67765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.8e-34  Score=243.71  Aligned_cols=256  Identities=20%  Similarity=0.300  Sum_probs=198.9

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceecee
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      ....++++|.+.|++++|+|++++|+||+.|++|++||..+++....+.. ...+.++.++++...++++..     +..
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~-----d~~  129 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-----DNK  129 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-----TSE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-----CCC
Confidence            45678899999999999999999999999999999999998887766654 456778888887776665442     233


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~  201 (326)
                      +.++.+..............+.+|.+.|.++.|+|++..|++++.|++|++||+++++.+..+   .+|...|.+++++|
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~---~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF---HGHGADVLCLDLAP  206 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECC
T ss_pred             EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---cCCCCCeEEEEEEe
Confidence            444444332222222345567789999999999999999999999999999999998876654   47889999999987


Q ss_pred             --CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce
Q 020461          202 --DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ  278 (326)
Q Consensus       202 --~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  278 (326)
                        ++.+|++|+.||+|++||+++++++..+. +...+++++|+|+++.+++++.+..  +..+|.+.            .
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--v~lwd~~~------------~  272 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT--CRLYDLRA------------D  272 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTT------------T
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe--EEEEECCC------------C
Confidence              57899999999999999999999988875 4678999999999987776654332  33344333            2


Q ss_pred             eeecccc--ccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          279 EEIGGVK--GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       279 ~~~~~~~--~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ..+..+.  .+...+.+++|+|++.+|++|+.|++|++|++...
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence            2222222  23457899999999999999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-34  Score=251.78  Aligned_cols=289  Identities=12%  Similarity=0.147  Sum_probs=212.2

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      ..+....|+|++++|++++.|+.|++|++.+++....+.+|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            34455678999999999999999999999999999889999999999999999999999999999999999998877776


Q ss_pred             e-cCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEEecc------------------------
Q 020461           91 N-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKG------------------------  144 (326)
Q Consensus        91 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  144 (326)
                      . +..++.++.++++...++. +.+..      +.+|++.      .+.....+..                        
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~------v~iwd~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  245 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGT------IRLWECG------TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI  245 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSC------EEEEETT------TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCc------EEEeECC------CCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence            5 4567888899986655444 33332      3333322      1122222222                        


Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCc
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~  223 (326)
                      +...+.++.|+|++++|++|+.||.|++||+++++....+.  .+|...+.+++|+|++. +|++|+.||.|++||++++
T Consensus       246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP--SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC--CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc--cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence            23556667788999999999999999999999887665543  36888999999999999 9999999999999999987


Q ss_pred             ce-EEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461          224 EL-IKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (326)
Q Consensus       224 ~~-~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~  300 (326)
                      +. +..+.  +...+.++.+. ++..+++ ++.|+. +..||.............   .....+.+|.+.|.+++|+|++
T Consensus       324 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~s-~~~d~~-v~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~  397 (420)
T 3vl1_A          324 ECPVGEFLINEGTPINNVYFA-AGALFVS-SGFDTS-IKLDIISDPESERPAIEF---ETPTFLVSNDDAVSQFCYVSDD  397 (420)
T ss_dssp             TSCSEEEEESTTSCEEEEEEE-TTEEEEE-ETTTEE-EEEEEECCTTCCSCEECT---TSCEEECCSSCCCCEEEEECCS
T ss_pred             cCchhhhhccCCCCceEEEeC-CCCEEEE-ecCCcc-EEEEeccCCCCCccceec---cCccEEccCCcceEEEEEccCC
Confidence            54 55554  34567777655 4554444 444432 223332211000000000   0111245788999999999999


Q ss_pred             c---eEEeecCCCcEEEeecCC
Q 020461          301 K---SFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       301 ~---~lat~s~Dg~i~l~~~~~  319 (326)
                      +   .+++++.+|.+++|++++
T Consensus       398 ~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          398 ESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SSSCEEEEEETTTEEEEEESCC
T ss_pred             CCcceEEEEcCCceEEEEeccC
Confidence            9   677777899999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.8e-34  Score=249.96  Aligned_cols=276  Identities=25%  Similarity=0.394  Sum_probs=211.9

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      .+|...|.+++|  ++++|++|+.|++|++||..+++.+..+.+|.+.|.+++|  ++++|++|+.||+|++||+.+++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            346667888766  7999999999999999999999999999999999999998  688999999999999999999988


Q ss_pred             EEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           87 LFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        87 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      +..+.. ...+.++.+. ++.++.++.+.      .+.++++...   ........+.+|...|.++.+  +++.+++|+
T Consensus       206 ~~~~~~h~~~v~~l~~~-~~~l~s~s~dg------~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~  273 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFN-NGMMVTCSKDR------SIAVWDMASP---TDITLRRVLVGHRAAVNVVDF--DDKYIVSAS  273 (435)
T ss_dssp             EEEECCCCSCEEEEECC-TTEEEEEETTS------CEEEEECSSS---SCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEc-CCEEEEeeCCC------cEEEEeCCCC---CCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence            877653 4455666665 34444444433      3444544321   111233667889999999998  678999999


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL  244 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~  244 (326)
                      .|+.|++||+++++.+..+   .+|...+.++.++  +.++++|+.||+|++||+++++++..+. +...+.++++  ++
T Consensus       274 ~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~  346 (435)
T 1p22_A          274 GDRTIKVWNTSTCEFVRTL---NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN  346 (435)
T ss_dssp             TTSEEEEEETTTCCEEEEE---ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred             CCCeEEEEECCcCcEEEEE---cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence            9999999999998877655   3688899999884  6799999999999999999999998886 4567888888  45


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeeccccee---------eeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE---------EIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      ..+++++ .|+             .+++|+.....         .+..+.+|.+.|.+++|  ++.+|++|+.||+|++|
T Consensus       347 ~~l~sg~-~dg-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iw  410 (435)
T 1p22_A          347 KRIVSGA-YDG-------------KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW  410 (435)
T ss_dssp             SEEEEEE-TTS-------------CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred             CEEEEEe-CCC-------------cEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEE
Confidence            5555544 333             23344433222         45567789999999999  78999999999999999


Q ss_pred             ecCCCc
Q 020461          316 HFDPDY  321 (326)
Q Consensus       316 ~~~~~~  321 (326)
                      ++..+.
T Consensus       411 d~~~~~  416 (435)
T 1p22_A          411 DFLNDP  416 (435)
T ss_dssp             C-----
T ss_pred             ECCCCC
Confidence            997654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1e-34  Score=246.34  Aligned_cols=288  Identities=13%  Similarity=0.061  Sum_probs=219.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC---eeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~w   79 (326)
                      .+..+|.+.|.+++|+|++++|++++.|+.|++|++.+++   ....+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3456899999999999999999999999999999998887   3455668999999999999999 99999999999999


Q ss_pred             Ec-cCCcEEEEEe--cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC---CCceEEEeccCccceeEEE
Q 020461           80 NV-ETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ---GGESVLILKGPQGRINRAV  153 (326)
Q Consensus        80 d~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~  153 (326)
                      |+ .+++......  +...+.++.+.++..++.++.+.      .+.+|++.......   .+..+..+. |...+.++.
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG------LIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS------EEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred             EeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCC------eEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence            99 8887644444  56677888888844444444433      33444433200000   011112223 778899999


Q ss_pred             EecCCcEEEEeeCCCcEEEEECCC-CccccccccccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecCCc------ce
Q 020461          154 WGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL------EL  225 (326)
Q Consensus       154 ~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~~~------~~  225 (326)
                      |+|++  +++++.|+.|++||+++ +..... .....|...+.+++++| ++.++++++.||.|++|+++..      +.
T Consensus       158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  234 (342)
T 1yfq_A          158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGT-IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             ECSSE--EEEEESTTEEEEEESSCCTTCCCE-EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             ecCCc--EEEEeCCCeEEEEECCccccccce-eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence            99987  99999999999999987 543221 12236778899999999 9999999999999999999876      66


Q ss_pred             EEEEeec-c---------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeEE
Q 020461          226 IKTYVTE-R---------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINAL  294 (326)
Q Consensus       226 ~~~~~~~-~---------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v  294 (326)
                      ...+... .         .+.+++|+|++..+++++.+.              .+++|+....+.+..+.+| .++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~~~h~~~v~~~  300 (342)
T 1yfq_A          235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG--------------IISCWNLQTRKKIKNFAKFNEDSVVKI  300 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS--------------CEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred             ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc--------------eEEEEcCccHhHhhhhhcccCCCceEe
Confidence            6666432 2         799999999988877665432              2455666556666677888 9999999


Q ss_pred             EECCCCceEEeecCCCc-EEEeec
Q 020461          295 AFNPDGKSFSSGGEDGY-VRLHHF  317 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~-i~l~~~  317 (326)
                      +  |++.+|++|+.||+ .+.+.+
T Consensus       301 ~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          301 A--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             E--ECSSEEEEEEECTHHHHCSSS
T ss_pred             c--CCCCeEEEEecCCcccccccc
Confidence            9  99999999999999 655553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.2e-35  Score=255.33  Aligned_cols=253  Identities=21%  Similarity=0.281  Sum_probs=199.7

Q ss_pred             eeeeecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCC-------CeeeeccCcccceEEEEEcCCC-CeEEEEeCCC
Q 020461            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQ   74 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~   74 (326)
                      ..+.+|...|.+++|+| ++++|++|+.|++|++|++.++       +.+..+.+|...|.+++|+|++ ++|++++.|+
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            35789999999999999 8999999999999999999988       5677889999999999999998 6999999999


Q ss_pred             cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      +|++||+.+++.+..+.                                                  ..+|...|.+++|
T Consensus       155 ~i~iwd~~~~~~~~~~~--------------------------------------------------~~~~~~~v~~~~~  184 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLG--------------------------------------------------PDVHPDTIYSVDW  184 (402)
T ss_dssp             CEEEEETTTTEEEEEEC--------------------------------------------------TTTCCSCEEEEEE
T ss_pred             EEEEEECCCCCccEEEe--------------------------------------------------cCCCCCceEEEEE
Confidence            99999998765432210                                                  0356778999999


Q ss_pred             ecCCcEEEEeeCCCcEEEEECCCCccccccccccCccee-eEEEEEcCCCCeEEEE---eCCCeEEEeecCCcce-EEE-
Q 020461          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTG---SLDKSAKLWDARTLEL-IKT-  228 (326)
Q Consensus       155 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~s~---s~dg~i~iwd~~~~~~-~~~-  228 (326)
                      +|++.+|++++.|+.|++||+++++.+..+.  .+|... +.++.|++++.+|++|   +.|+.|++||+++++. +.. 
T Consensus       185 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~  262 (402)
T 2aq5_A          185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ  262 (402)
T ss_dssp             CTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred             CCCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence            9999999999999999999999887765542  256554 8999999999999999   7999999999998664 222 


Q ss_pred             -EeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461          229 -YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG  307 (326)
Q Consensus       229 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s  307 (326)
                       +.....+.+++++|+++.++++++.|+. +..+|.+.+...        ...+.... |..+|.+++|+|++.++++  
T Consensus       263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~--------~~~l~~~~-~~~~v~~~~~sp~~~~~~s--  330 (402)
T 2aq5_A          263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPF--------LHYLSMFS-SKESQRGMGYMPKRGLEVN--  330 (402)
T ss_dssp             ECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTC--------EEEEEEEC-CSSCCSEEEECCGGGSCGG--
T ss_pred             eccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcc--------eEeecccc-cCCcccceEEeccccccee--
Confidence             2345678999999999998877654542 223332221100        11122222 5689999999999999875  


Q ss_pred             CCCcEEEeecCCC
Q 020461          308 EDGYVRLHHFDPD  320 (326)
Q Consensus       308 ~Dg~i~l~~~~~~  320 (326)
                      .|+.+++|++...
T Consensus       331 ~~~~~~~~~l~~~  343 (402)
T 2aq5_A          331 KCEIARFYKLHER  343 (402)
T ss_dssp             GTEEEEEEEEETT
T ss_pred             cceeEEEEEcCCC
Confidence            5679999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.2e-33  Score=247.04  Aligned_cols=278  Identities=23%  Similarity=0.402  Sum_probs=217.7

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|...|.+++|+  +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+  ++.+++++.|++|++||+.+
T Consensus       153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~  228 (445)
T 2ovr_B          153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET  228 (445)
T ss_dssp             EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS
T ss_pred             EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC
Confidence            4567899999999997  5699999999999999999999999999999999999985  56799999999999999999


Q ss_pred             CcEEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           84 GAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ++.+..+.. ..++.++.+ .+..++..+.+.      .+.++++.      .+..+..+.+|...|.++.+  ++..++
T Consensus       229 ~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg------~i~iwd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l~  293 (445)
T 2ovr_B          229 GQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDF------MVKVWDPE------TETCLHTLQGHTNRVYSLQF--DGIHVV  293 (445)
T ss_dssp             CCEEEEEECCSSCEEEEEE-CSSCEEEEETTS------CEEEEEGG------GTEEEEEECCCSSCEEEEEE--CSSEEE
T ss_pred             CcEEEEEcCCcccEEEEEE-CCCEEEEEcCCC------EEEEEECC------CCcEeEEecCCCCceEEEEE--CCCEEE
Confidence            888776653 445566665 344454444433      33444432      24567778899999999998  778999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe----eccceEEE
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAV  238 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~  238 (326)
                      +++.|+.|++||+++++.+..+   .+|...+.++.++  +.++++|+.||.|++||+++++++..+.    +...+.++
T Consensus       294 ~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  368 (445)
T 2ovr_B          294 SGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL  368 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEE---CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             EEeCCCeEEEEECCCCCEEEEE---cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence            9999999999999998877654   3677888888764  5699999999999999999999988886    45678888


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-----cccCcceeEEEECCCCceEEeecCCCc--
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-----KGHFGPINALAFNPDGKSFSSGGEDGY--  311 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~s~d~~~lat~s~Dg~--  311 (326)
                      ++++  +.++++ +.|+             .+++|+...++.+..+     .+|.+.|++++|+|++.++|+|+.||+  
T Consensus       369 ~~~~--~~l~s~-~~dg-------------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~  432 (445)
T 2ovr_B          369 QFNK--NFVITS-SDDG-------------TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE  432 (445)
T ss_dssp             EECS--SEEEEE-ETTS-------------EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred             EECC--CEEEEE-eCCC-------------eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCc
Confidence            8864  444444 4443             2334444333333333     468899999999999999999999998  


Q ss_pred             --EEEeecCCCc
Q 020461          312 --VRLHHFDPDY  321 (326)
Q Consensus       312 --i~l~~~~~~~  321 (326)
                        |.+|+|+++.
T Consensus       433 ~~l~v~df~~~~  444 (445)
T 2ovr_B          433 TKLLVLDFDVDM  444 (445)
T ss_dssp             CEEEEEECCCCC
T ss_pred             cEEEEEECCCCC
Confidence              9999999874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-33  Score=239.39  Aligned_cols=254  Identities=22%  Similarity=0.305  Sum_probs=198.3

Q ss_pred             CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceece
Q 020461           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNS  120 (326)
Q Consensus        42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (326)
                      .....++++|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.. ...+.++.+++++..++.+..     +.
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----d~  119 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-----DN  119 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET-----TC
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC-----CC
Confidence            345678899999999999999999999999999999999999888777654 455777888887766555432     23


Q ss_pred             eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEc
Q 020461          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA  200 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s  200 (326)
                      .+.++.+....  ........+.+|.+.|.++.|++++. +++++.|++|++||+++++....+   .+|...|.+++++
T Consensus       120 ~v~iw~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~~  193 (340)
T 1got_B          120 ICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF---TGHTGDVMSLSLA  193 (340)
T ss_dssp             EEEEEETTTCS--BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEC
T ss_pred             eEEEEECccCC--CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE---cCCCCceEEEEEC
Confidence            34455443211  11234566789999999999999765 889999999999999998776654   4789999999999


Q ss_pred             CCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee
Q 020461          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE  279 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  279 (326)
                      |++.++++|+.|++|++||+++++++..+. +...+.+++|+|+++.+++++.+..  +..+|.+.            .+
T Consensus       194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~--v~iwd~~~------------~~  259 (340)
T 1got_B          194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--CRLFDLRA------------DQ  259 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTT------------TE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc--EEEEECCC------------Cc
Confidence            999999999999999999999999988875 4568999999999988776654332  33334332            22


Q ss_pred             eeccc--cccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          280 EIGGV--KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       280 ~~~~~--~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .+..+  ..+...|.+++|+|+|++|++|+.||.|++|+....
T Consensus       260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence            22222  234457999999999999999999999999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.7e-33  Score=247.68  Aligned_cols=279  Identities=23%  Similarity=0.370  Sum_probs=217.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEc--CCCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~--~~~~~l~s~~~d~~i~~wd~   81 (326)
                      ..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+  ++++++++++.|++|++||+
T Consensus       156 ~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~  234 (464)
T 3v7d_B          156 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL  234 (464)
T ss_dssp             EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEEC
T ss_pred             EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeC
Confidence            4567899999999999988 89999999999999999999999999999999999998  57789999999999999999


Q ss_pred             cCCcEEEEEe------------------------cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCC
Q 020461           82 ETGAQLFTFN------------------------FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (326)
Q Consensus        82 ~~~~~~~~~~------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (326)
                      .+++......                        +...+.+  +.+ +..++..+.+      ..+.++++.      .+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d------~~i~vwd~~------~~  300 (464)
T 3v7d_B          235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYD------NTLIVWDVA------QM  300 (464)
T ss_dssp             CCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEETT------SCEEEEETT------TT
T ss_pred             CCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeCC------CeEEEEECC------CC
Confidence            8765432111                        1111111  222 2223333222      234444432      34


Q ss_pred             ceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEE
Q 020461          137 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (326)
Q Consensus       137 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~  216 (326)
                      ..+..+.+|...|.++.|+|+++.+++|+.|+.|++||+++++.+..+   .+|...|.+++++  +.+|++|+.||+|+
T Consensus       301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~--~~~l~s~s~dg~v~  375 (464)
T 3v7d_B          301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL---QGHTALVGLLRLS--DKFLVSAAADGSIR  375 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred             cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE---eCCCCcEEEEEEc--CCEEEEEeCCCcEE
Confidence            677788899999999999999999999999999999999998877655   4788999999997  57999999999999


Q ss_pred             EeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc-ccccCcceeEEE
Q 020461          217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALA  295 (326)
Q Consensus       217 iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~  295 (326)
                      +||+++++..........+..+++++++..+++++  ++             .+++|+...++.+.. +.+|.+.|++++
T Consensus       376 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--dg-------------~i~iwd~~~g~~~~~~~~~~~~~v~~v~  440 (464)
T 3v7d_B          376 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--EN-------------QFNIYNLRSGKLVHANILKDADQIWSVN  440 (464)
T ss_dssp             EEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--TT-------------EEEEEETTTCCEEESCTTTTCSEEEEEE
T ss_pred             EEECCCCceeeeecCCCCccEEEEEeCCCEEEEec--CC-------------eEEEEECCCCcEEehhhccCCCcEEEEE
Confidence            99999988887777777888899999988776654  22             245566555555543 567889999999


Q ss_pred             ECCCCceEEeecCCCcEEEeecC
Q 020461          296 FNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       296 ~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      |+ +..++++++.||.+.+|-+|
T Consensus       441 ~~-~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          441 FK-GKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             EE-TTEEEEEEEETTEEEEEEEE
T ss_pred             ec-CCEEEEEEEeCCeEEEEEee
Confidence            97 45667777888877776554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8e-34  Score=259.20  Aligned_cols=286  Identities=14%  Similarity=0.155  Sum_probs=227.7

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCC----CeeeeccCcccc-eEEEEEcC--CCCeEEEEeCCCcEE
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGA-VWCCDVSR--DSMTLITGSADQTAK   77 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~-V~~~~~~~--~~~~l~s~~~d~~i~   77 (326)
                      ....|...|.+++|+|++++|++++ ++.|++|++.++    +.+..+.+|.+. |.+++|+|  ++++|++++.|++|+
T Consensus        13 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~   91 (615)
T 1pgu_A           13 QPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI   91 (615)
T ss_dssp             CCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             CCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence            4456889999999999999999988 789999999999    889999999999 99999999  999999999999999


Q ss_pred             EEEccCC--------cEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461           78 LWNVETG--------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (326)
Q Consensus        78 ~wd~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (326)
                      +||+.++        +....+. +..++..+.|++++..+++...... ....+.+++        .+.....+.+|...
T Consensus        92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d--------~~~~~~~~~~~~~~  162 (615)
T 1pgu_A           92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWD--------SGNSLGEVSGHSQR  162 (615)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETT--------TCCEEEECCSCSSC
T ss_pred             EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEE--------CCCcceeeecCCcc
Confidence            9999755        4444444 4567888889987776655443210 011222222        23567788899999


Q ss_pred             eeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcce---eeEEEEEcCC-CCeEEEEeCCCeEEEeecCCc
Q 020461          149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAAD-GSHFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       149 i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~  223 (326)
                      |.++.|+|+++ .+++++.|+.|++||+.+++....+   .+|..   .|.+++|+|+ +.+|++++.|+.|++||++++
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  239 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG  239 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee---cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999999998 8999999999999999988776654   36777   8999999999 999999999999999999999


Q ss_pred             ceEEEE-----eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc----CcceeEE
Q 020461          224 ELIKTY-----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH----FGPINAL  294 (326)
Q Consensus       224 ~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~v  294 (326)
                      +.+..+     .+...+.+++++ ++..+++++.+.  .            +++|+....+.+..+..|    ...+.++
T Consensus       240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--~------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  304 (615)
T 1pgu_A          240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA--T------------IRVWDVTTSKCVQKWTLDKQQLGNQQVGV  304 (615)
T ss_dssp             CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS--E------------EEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred             CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC--c------------EEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence            999988     566789999999 777766654432  1            233443333333333333    4678888


Q ss_pred             EECCCCceEEeecCCCcEEEeecCC
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      .|+ ++.++++++.||.|++|++..
T Consensus       305 ~~~-~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          305 VAT-GNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             EEE-ETTEEEEEETTSCEEEEETTE
T ss_pred             EeC-CCCeEEEEECCCCEEEEECCC
Confidence            886 899999999999999999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=240.33  Aligned_cols=267  Identities=15%  Similarity=0.229  Sum_probs=194.9

Q ss_pred             CeeeeccCccc-ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE----ecCCCcceeeeecCCeEEEEEcCccce
Q 020461           43 ERLGTYRGHNG-AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF----NFDSPARSVDFAVGDKLAVITTDPFME  117 (326)
Q Consensus        43 ~~~~~~~~h~~-~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (326)
                      +++.++++|.+ .|++++|+|++++|++|+.|++|++||+.+++.....    .+...+.++.|++++..++.+..    
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~----   81 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF----   81 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET----
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC----
Confidence            45678899988 8999999999999999999999999999887644322    24567888899987665554432    


Q ss_pred             eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEE
Q 020461          118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL  197 (326)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v  197 (326)
                       +..+.+|....    .....+..+.+|...|.+++|+|++++|++|+.|++|++||++++..........+|...|.++
T Consensus        82 -D~~v~iw~~~~----~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  156 (345)
T 3fm0_A           82 -DATTCIWKKNQ----DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV  156 (345)
T ss_dssp             -TSCEEEEEECC----C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred             -CCcEEEEEccC----CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence             22334444321    1123567788999999999999999999999999999999998765433333345789999999


Q ss_pred             EEcCCCCeEEEEeCCCeEEEeecCCcceE--EEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee-
Q 020461          198 AKAADGSHFLTGSLDKSAKLWDARTLELI--KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF-  273 (326)
Q Consensus       198 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-  273 (326)
                      +|+|++.+|++|+.|++|++||.++++..  ..+. +...+.+++|+|++..+++++.+..  +..||.+.......+. 
T Consensus       157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~--v~iW~~~~~~~~~~~~~  234 (345)
T 3fm0_A          157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT--VRIWRQYLPGNEQGVAC  234 (345)
T ss_dssp             EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEEEECTTCTTCCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe--EEEeccccCCCCcccee
Confidence            99999999999999999999999877533  3443 4568999999999988776654433  2233321110000000 


Q ss_pred             --cccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          274 --DKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       274 --~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                        .......+..+.+ |...|.+++|+|++..||+++.|+.|++|+.++.
T Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence              0000111222333 8889999999999999999999999999998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6e-33  Score=244.21  Aligned_cols=279  Identities=28%  Similarity=0.489  Sum_probs=216.5

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +..+.+|.+.+.. ++++++++|++|+.|++|++||+.+++.+..+.+|.+.|++++|+  ++++++++.|++|++||+.
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            4678999987533 356679999999999999999999999999999999999999997  5699999999999999999


Q ss_pred             CCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      +++.+..+. +...+.++.+. ++.++.++.+.      .+.++++.      .+.....+.+|...|.++.+  ++..+
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg------~i~~wd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l  252 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDA------TLRVWDIE------TGQCLHVLMGHVAAVRCVQY--DGRRV  252 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE-TTEEEEEETTS------EEEEEESS------SCCEEEEEECCSSCEEEEEE--CSSCE
T ss_pred             cCcEEEEECCCCCcEEEEEec-CCEEEEEeCCC------EEEEEECC------CCcEEEEEcCCcccEEEEEE--CCCEE
Confidence            998887765 34556666664 34454444433      34444432      34567788899999999998  67899


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceEEEEe
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTM  240 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~  240 (326)
                      ++|+.|+.|++||+++++.+..+   .+|...+.++++  ++.++++|+.|+.|++||+++++++..+.. ...+.++.+
T Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~  327 (445)
T 2ovr_B          253 VSGAYDFMVKVWDPETETCLHTL---QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL  327 (445)
T ss_dssp             EEEETTSCEEEEEGGGTEEEEEE---CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred             EEEcCCCEEEEEECCCCcEeEEe---cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence            99999999999999988776655   368889999998  788999999999999999999999888753 345666665


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc---ccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK---GHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +  ++.+++++ .|+             .+++|+...++.+..+.   .|..+|.+++|+  +.+|++|+.||.|++|++
T Consensus       328 ~--~~~l~~~~-~dg-------------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          328 K--DNILVSGN-ADS-------------TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             E--TTEEEEEE-TTS-------------CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             e--CCEEEEEe-CCC-------------eEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence            4  45555443 333             23344443333334444   488999999996  689999999999999999


Q ss_pred             CCCce
Q 020461          318 DPDYF  322 (326)
Q Consensus       318 ~~~~~  322 (326)
                      .....
T Consensus       390 ~~~~~  394 (445)
T 2ovr_B          390 KTGEF  394 (445)
T ss_dssp             TTCCE
T ss_pred             CCCce
Confidence            86543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=242.01  Aligned_cols=285  Identities=18%  Similarity=0.270  Sum_probs=214.1

Q ss_pred             eeeeecCCceeEEEEccC---CCEEEeecCCCCeEEEecCC-CCee-eeccCcccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461            4 ILMKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~---~~~l~s~~~d~~v~iw~~~~-~~~~-~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~   78 (326)
                      .++.+|.+.|.+++|+|+   |++|++|+.|+.|++|++.+ +..+ ..+.+|.+.|.+++|+|++++|++++.|++|++
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  112 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM  112 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence            567899999999999999   69999999999999999987 5554 778899999999999999999999999999999


Q ss_pred             EEccCCcEEEEEecCCCcceeee--ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           79 WNVETGAQLFTFNFDSPARSVDF--AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        79 wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ||+.+++......+..++.++.+  .++...++.+..     +..+.+|++..      +..+..+..+. .+.++.+. 
T Consensus       113 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~~~~~~~~~~-~~~~~~~~-  179 (368)
T 3mmy_A          113 WDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW-----DKTLKFWDTRS------SNPMMVLQLPE-RCYCADVI-  179 (368)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEET-----TSEEEEECSSC------SSCSEEEECSS-CEEEEEEE-
T ss_pred             EEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccC-----CCcEEEEECCC------CcEEEEEecCC-CceEEEec-
Confidence            99999988887778888889988  666655544332     22344454432      23444455443 44455444 


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe----EEEEeCCCeEEEeecCCc---ceEEEE
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH----FLTGSLDKSAKLWDARTL---ELIKTY  229 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~----l~s~s~dg~i~iwd~~~~---~~~~~~  229 (326)
                       ...+++++.++.+++||++......... ...+.....++.+.++...    +++++.||.|++||++..   +.+..+
T Consensus       180 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  257 (368)
T 3mmy_A          180 -YPMAVVATAERGLIVYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF  257 (368)
T ss_dssp             -TTEEEEEEGGGCEEEEECSSSCEEEEEC-CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred             -CCeeEEEeCCCcEEEEEeccccchhhhc-cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence             4578889999999999998654332211 1123344455555554444    999999999999999886   445554


Q ss_pred             eecc-------------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461          230 VTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (326)
Q Consensus       230 ~~~~-------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  296 (326)
                      ....             .+.+++++|++..+++++.+.              .+++|+....+.+..+.+|..+|++++|
T Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~  323 (368)
T 3mmy_A          258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG--------------RFSFWDKDARTKLKTSEQLDQPISACCF  323 (368)
T ss_dssp             ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS--------------CEEEEETTTTEEEEECCCCSSCEEEEEE
T ss_pred             eeeecccccccccccccceEEEEEecCCCEEEEEccCC--------------eEEEEECCCCcEEEEecCCCCCceEEEE
Confidence            4322             599999999988777665433              2456666666667778899999999999


Q ss_pred             CCCCceEEeecCCCcEEEeec
Q 020461          297 NPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       297 s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +|+|++||+|+.|+..+.|++
T Consensus       324 s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          324 NHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CTTSSCEEEEECCCSTTCGGG
T ss_pred             CCCCCeEEEEecccccccccc
Confidence            999999999999987766554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-33  Score=237.09  Aligned_cols=233  Identities=18%  Similarity=0.265  Sum_probs=187.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+++|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++.
T Consensus        59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred             eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             CcEEEEEecCCCcceeeeecCC-------eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           84 GAQLFTFNFDSPARSVDFAVGD-------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ........+...+..+.+.+..       .++..+.+      ..+.+|++.      .......+.+|...|.+++|+|
T Consensus       139 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~sp  206 (319)
T 3frx_A          139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLN------QFQIEADFIGHNSNINTLTASP  206 (319)
T ss_dssp             CEEEEECCCSSCEEEEEECCC------CCEEEEEETT------SCEEEEETT------TTEEEEEECCCCSCEEEEEECT
T ss_pred             CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECC------cchhheeecCCCCcEEEEEEcC
Confidence            4333223344556666666532       23333332      234455442      2345667889999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-----
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----  231 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----  231 (326)
                      ++++|++|+.|++|++||+++++.+..+.    +...+.+++|+|++.+|++++.+ .+++|++..+..+..+..     
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~  281 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY  281 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEEEEEE----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc
Confidence            99999999999999999999888766553    34679999999999998888754 599999998877766542     


Q ss_pred             ----ccceEEEEeCCCCCeeEEecCC
Q 020461          232 ----ERPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       232 ----~~~~~~~~~s~~~~~~~~~~~~  253 (326)
                          ...+.+++|+|+++.+++++.+
T Consensus       282 ~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          282 SKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             CGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             ccCcCcceeEEEECCCCCEEEEeecC
Confidence                2357899999999988776543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.1e-34  Score=245.92  Aligned_cols=278  Identities=20%  Similarity=0.303  Sum_probs=205.3

Q ss_pred             CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEE
Q 020461           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAV  109 (326)
Q Consensus        31 d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  109 (326)
                      +..+..|+..+..+..++.+|.+.|++++|+|++++|+||+.|++|++||+.+++....+.. ...+..+.|++++..++
T Consensus        45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la  124 (380)
T 3iz6_a           45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA  124 (380)
T ss_dssp             GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred             cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence            34455677777788889999999999999999999999999999999999999988777754 45677788888777666


Q ss_pred             EEcCccceeceeeeeeeeccCCC-CCCCceEEEeccCccceeEEEEecCC-cEEEEeeCCCcEEEEECCCCccccccc--
Q 020461          110 ITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESD--  185 (326)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~--  185 (326)
                      ++..     +..+.++.+..... .........+.+|.+.+.++.|.|++ ..|++|+.|++|++||+++++.+..+.  
T Consensus       125 s~~~-----d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~  199 (380)
T 3iz6_a          125 CGGL-----DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE  199 (380)
T ss_dssp             ECCS-----SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC
T ss_pred             EeeC-----CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc
Confidence            5432     22344444432111 11122344578999999999999975 579999999999999999988765432  


Q ss_pred             cccCcceeeEEEEEcC-CCCeEEEEeCCCeEEEeecC-CcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeec
Q 020461          186 KETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDAR-TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (326)
Q Consensus       186 ~~~~h~~~v~~v~~s~-~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d  262 (326)
                      ...+|...|.++++++ ++.+|++|+.|++|++||++ ..+++..+. +...+++++|+|++..+++++.+..  +..||
T Consensus       200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--i~lwd  277 (380)
T 3iz6_a          200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT--CRLFD  277 (380)
T ss_dssp             SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC--EEEEE
T ss_pred             cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe--EEEEE
Confidence            2257889999999976 88999999999999999998 446666664 5678999999999988776654332  33445


Q ss_pred             ccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .+.+... ..+....    .....+...|++++|+|+|++|++|+.||.|++|+....
T Consensus       278 ~~~~~~~-~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          278 MRTGHQL-QVYNREP----DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             TTTTEEE-EEECCCC----SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             CCCCcEE-EEecccc----cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence            4443321 1111100    011223446899999999999999999999999997543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-33  Score=234.81  Aligned_cols=267  Identities=16%  Similarity=0.209  Sum_probs=183.6

Q ss_pred             CCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc--EEEEEe---cCCCcceeeeecCCeEEEEEcCcc
Q 020461           41 NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA--QLFTFN---FDSPARSVDFAVGDKLAVITTDPF  115 (326)
Q Consensus        41 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  115 (326)
                      +.+++.++++|.++|++++|+|+  +|++|+.|++|++||++++.  ....+.   +..++.++.|+++..+++.+..  
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~--   78 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF--   78 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET--
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC--
Confidence            34567788999999999999987  99999999999999998753  333331   4567888899987765554432  


Q ss_pred             ceeceeeeeeeeccCCC-CCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCC-ccccccccccCccee
Q 020461          116 MELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKT  193 (326)
Q Consensus       116 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~h~~~  193 (326)
                         +..+.+|....... .........+.+|...|.+++|+|++++|++|+.|++|++||++.. +....+....+|...
T Consensus        79 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           79 ---DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             ---TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             ---CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence               22344454422110 1123456778899999999999999999999999999999999532 222222234579999


Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEeecCCc--ceEEEEe-eccceEEEEeCCCCC-eeEEecCCCcceeEeecccCceee
Q 020461          194 ITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYV-TERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFE  269 (326)
Q Consensus       194 v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~-~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~d~~~~~~~  269 (326)
                      |.+++|+|++.+|++|+.|++|++||.+++  +++..+. +...+.+++|+|+.. ..+++++.|+. +..+|.+.+...
T Consensus       156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~  234 (330)
T 2hes_X          156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDED  234 (330)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTT
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCcc
Confidence            999999999999999999999999998765  5666664 456899999999843 23344444432 222322111000


Q ss_pred             eEeecccceeeeccccc-cCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          270 AKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       270 ~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                          ..........+.+ |...|.+++|++++ +||+|+.||+|+||+....
T Consensus       235 ----~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          235 ----DQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             ----SCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             ----ccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence                0000012223333 88999999999765 8999999999999998654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.7e-33  Score=239.62  Aligned_cols=221  Identities=21%  Similarity=0.359  Sum_probs=178.4

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      ..|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             ecCCCcceeeeec-CCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEEe-------ccCccceeEEEEecCCcEE
Q 020461           91 NFDSPARSVDFAV-GDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLIL-------KGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        91 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l  161 (326)
                      .....+..+.+.+ +...++. +.+.      .+.+|+...      +..+..+       .+|...|.+++|+|++++|
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l  271 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  271 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTS------CEEEEETTT------CCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcCCC------cEEEEECCC------CcEEEeecccccCCCCCCCCEEEEEECCCCCEE
Confidence            7777777888887 4444443 3333      334443321      2222222       5788999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccc---------cccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-e
Q 020461          162 ISAGEDAIVRIWDTETGKLLKE---------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T  231 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~---------~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~  231 (326)
                      ++|+.|++|++||+++......         .....+|...|.++++++++.+|++|+.|++|++||.++++++..+. +
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            9999999999999976432111         11234788899999999999999999999999999999999888875 4


Q ss_pred             ccceEEEEeCCC
Q 020461          232 ERPVNAVTMSPL  243 (326)
Q Consensus       232 ~~~~~~~~~s~~  243 (326)
                      ...+.++++++.
T Consensus       352 ~~~v~~v~~~~~  363 (393)
T 1erj_A          352 RNSVISVAVANG  363 (393)
T ss_dssp             SSCEEEEEECSS
T ss_pred             CCCEEEEEecCC
Confidence            567899998863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1e-32  Score=260.06  Aligned_cols=301  Identities=18%  Similarity=0.235  Sum_probs=222.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|..+|.+++|+|++++|++++.|+.|++|+..+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+.+
T Consensus        49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~  128 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (814)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred             EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             C-cEEEEEe-cCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-cCccceeEEEEec--C
Q 020461           84 G-AQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGP--L  157 (326)
Q Consensus        84 ~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~--~  157 (326)
                      + .....+. +..++.++.|++ +...++++..     +..+.++++..      +.....+. .+...+..+.|+|  +
T Consensus       129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~  197 (814)
T 3mkq_A          129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLPD  197 (814)
T ss_dssp             TSEEEEEEECCSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTC------SSCSEEEECCCTTCCCEEEECCSTT
T ss_pred             CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCC------CcceeEEecCCCCCEEEEEEEECCC
Confidence            7 4444443 456778888988 4444443322     22344454321      22233333 4448899999999  8


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-ccceE
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN  236 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~  236 (326)
                      +.++++++.|+.|++||+++++....+   .+|...|.+++|+|++.++++++.||.|++||+.+++.+..+.. ...+.
T Consensus       198 ~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~  274 (814)
T 3mkq_A          198 KPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW  274 (814)
T ss_dssp             CCEEEEECTTSEEEEEETTTTEEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEE
Confidence            999999999999999999988766554   36888999999999999999999999999999999998888764 46799


Q ss_pred             EEEeCCCCCee-EEecCCCcceeEeecccCceee-----eEee--------------------cccce----eeeccccc
Q 020461          237 AVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFE-----AKFF--------------------DKILQ----EEIGGVKG  286 (326)
Q Consensus       237 ~~~~s~~~~~~-~~~~~~~~~~~~~~d~~~~~~~-----~~~~--------------------~~~~~----~~~~~~~~  286 (326)
                      +++++|++..+ ++++..++..+...........     ..++                    .....    .....+..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (814)
T 3mkq_A          275 CIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS  354 (814)
T ss_dssp             EEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECC
T ss_pred             EEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCC
Confidence            99999998865 4444443332221111000000     0000                    00000    00111234


Q ss_pred             cCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          287 HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       287 h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      |...+.+++|+|+|+++++++ ||.+.+|++..
T Consensus       355 ~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          355 VDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             CSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             CccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence            555678888888888888887 78888887653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-33  Score=243.91  Aligned_cols=285  Identities=14%  Similarity=0.156  Sum_probs=213.0

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC---eeeeccC------------------------------------
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRG------------------------------------   50 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~------------------------------------   50 (326)
                      ..++.+++|+|+|++|+++ .++.|++|++.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977665 57799999999998   6655543                                    


Q ss_pred             ------------------cccceEEEEEcCCCCeE-EEEeCCCcEEEEEcc--CCcEEEEEe---cCCCcceeeeecCCe
Q 020461           51 ------------------HNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVE--TGAQLFTFN---FDSPARSVDFAVGDK  106 (326)
Q Consensus        51 ------------------h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~---~~~~~~~~~~~~~~~  106 (326)
                                        |.+.|.+++|+|++++| ++++.|++|++||+.  +++.+..+.   +...+.++.|++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              33379999999999996 899999999999999  777776653   456677888998776


Q ss_pred             EEEEEcCccceeceeeeeeeeccCCCCCCCc-eEEEeccCccceeEEEEecC---CcEEEEeeCCCcEEEEECCCCcccc
Q 020461          107 LAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLILKGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLLK  182 (326)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~~~  182 (326)
                      .++++..     ...+..+.+....   ... ....+.+|...|.+++|+|+   +++|++|+.|++|++||+++++.+.
T Consensus       163 ~l~~~~~-----~g~v~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          163 TVIIADK-----FGDVYSIDINSIP---EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             EEEEEET-----TSEEEEEETTSCC---CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred             EEEEEeC-----CCcEEEEecCCcc---cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence            6655432     1222333322111   111 22355688999999999999   8999999999999999999887665


Q ss_pred             ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--------------------------cceE
Q 020461          183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------------------RPVN  236 (326)
Q Consensus       183 ~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------------------~~~~  236 (326)
                      .+  ..+|...|.+++|+ ++.+|++|+.|++|++||+++++++..+...                          ..+.
T Consensus       235 ~~--~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          235 KW--LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EE--CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             ee--ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            42  24789999999999 9999999999999999999999988887521                          3578


Q ss_pred             EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecc--cce---eeeccccccCcceeEEEECCCCceEEeecC---
Q 020461          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK--ILQ---EEIGGVKGHFGPINALAFNPDGKSFSSGGE---  308 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~h~~~v~~v~~s~d~~~lat~s~---  308 (326)
                      .++++|++..+++++..++. +            ++|+.  ...   ..+..+.+| +.|.+++|+|++.++++++.   
T Consensus       312 ~i~~~~~~~~l~~~~~~d~~-i------------~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~  377 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATKC-I------------IILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESS  377 (450)
T ss_dssp             EEEECSSSSEEEEEETTCSE-E------------EEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCC
T ss_pred             EEEEeCCCCEEEEEECCCCe-E------------EEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCC
Confidence            89999999888877633331 2            23332  111   334445667 78999999997666665554   


Q ss_pred             ---CCcEEEeecCCC
Q 020461          309 ---DGYVRLHHFDPD  320 (326)
Q Consensus       309 ---Dg~i~l~~~~~~  320 (326)
                         +..|++|.++.+
T Consensus       378 ~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          378 GVQKNFAKFIEYNLN  392 (450)
T ss_dssp             SSCCCSEEEEEEETT
T ss_pred             CCCCcceEEEEEEcC
Confidence               556899998765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.3e-34  Score=249.15  Aligned_cols=237  Identities=14%  Similarity=0.141  Sum_probs=162.4

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe-----eeeccCcccceEEEEEcC--------CCCeEEEEeCCCcE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-----LGTYRGHNGAVWCCDVSR--------DSMTLITGSADQTA   76 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-----~~~~~~h~~~V~~~~~~~--------~~~~l~s~~~d~~i   76 (326)
                      ........+++++++|++++.|++|+||+..+++.     +..+.+|.+.|++++|+|        |+++|+|||.|++|
T Consensus        89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            33344445566778999999999999999988864     345789999999999997        78999999999999


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      |+||+.++....                                                    .+.+|.+.+.+++|+|
T Consensus       169 ~~Wd~~~~~~~~----------------------------------------------------~~~~~~~~v~~v~~~p  196 (393)
T 4gq1_A          169 IIWRLTDEGPIL----------------------------------------------------AGYPLSSPGISVQFRP  196 (393)
T ss_dssp             EEEEEETTEEEE----------------------------------------------------EEEECSSCEEEEEEET
T ss_pred             EEEECCCCceee----------------------------------------------------eecCCCCCcEEEEECC
Confidence            999987654321                                                    2234667888999999


Q ss_pred             CCc-EEEEeeCCCcEEEEECCCCccccccc----------------------cccCcceeeEEEEEc-CCCCeEEEEeCC
Q 020461          157 LNR-TIISAGEDAIVRIWDTETGKLLKESD----------------------KETGHKKTITSLAKA-ADGSHFLTGSLD  212 (326)
Q Consensus       157 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~----------------------~~~~h~~~v~~v~~s-~~~~~l~s~s~d  212 (326)
                      ++. +|++|+.|++|++||+++++......                      ...+|...+.++.|+ +++..+++++.|
T Consensus       197 ~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d  276 (393)
T 4gq1_A          197 SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKS  276 (393)
T ss_dssp             TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTT
T ss_pred             CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCC
Confidence            875 79999999999999998776433211                      123577788889876 799999999999


Q ss_pred             CeEEEeecCCcceEEEEee-ccceEEEE------------------eCCC-CCeeEEecCCCcceeEeecccCceeeeEe
Q 020461          213 KSAKLWDARTLELIKTYVT-ERPVNAVT------------------MSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKF  272 (326)
Q Consensus       213 g~i~iwd~~~~~~~~~~~~-~~~~~~~~------------------~s~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (326)
                      +++++||+++++....+.. ...+..+.                  ++|. ...++++++.|+             .+++
T Consensus       277 ~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-------------~V~l  343 (393)
T 4gq1_A          277 GAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG-------------LIQL  343 (393)
T ss_dssp             SEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT-------------EEEE
T ss_pred             CCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC-------------EEEE
Confidence            9999999988765554421 11222222                  2222 333444444443             3456


Q ss_pred             ecccceeeeccccccCcceeEEEECCCCceEEeecCCCc
Q 020461          273 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGY  311 (326)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~  311 (326)
                      |+...++....+.+|..+|++++|||||++||+++.||.
T Consensus       344 wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          344 INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            666555555556778899999999999999999998775

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-32  Score=233.68  Aligned_cols=231  Identities=18%  Similarity=0.242  Sum_probs=178.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+..
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999974


Q ss_pred             CcEEEEEe----cCCCcceeeeecCC-----------eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461           84 GAQLFTFN----FDSPARSVDFAVGD-----------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (326)
Q Consensus        84 ~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (326)
                      . ......    +...+.++.+.+..           .++..+.+      ..+.+|+.       .......+.+|...
T Consensus       150 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~-------~~~~~~~~~~h~~~  215 (343)
T 2xzm_R          150 E-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWNT-------NFQIRYTFKAHESN  215 (343)
T ss_dssp             C-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEET-------TTEEEEEEECCSSC
T ss_pred             C-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEcC-------CCceeEEEcCcccc
Confidence            3 222221    23345566666543           23333333      23444441       23456678899999


Q ss_pred             eeEEEEecCCcEEEEeeCCCcEEEEECCCCc-cccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (326)
Q Consensus       149 i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (326)
                      |.+++|+|++++|++|+.|++|++||+.... ....+    .+...|.+++|+|++.+++ ++.|+.|++||+.+++...
T Consensus       216 v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF----DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE----ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCS
T ss_pred             ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee----cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCc
Confidence            9999999999999999999999999995432 22222    2445699999999998765 4568889999998876544


Q ss_pred             --EEe------------eccceEEEEeCCCCCeeEEecCC
Q 020461          228 --TYV------------TERPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       228 --~~~------------~~~~~~~~~~s~~~~~~~~~~~~  253 (326)
                        .+.            +...+.+++|+|+++.+++++.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D  330 (343)
T 2xzm_R          291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD  330 (343)
T ss_dssp             EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT
T ss_pred             eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC
Confidence              322            23458899999999888776543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-31  Score=225.23  Aligned_cols=252  Identities=25%  Similarity=0.361  Sum_probs=199.0

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceecee
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      ....++.+|.+.|.+++|+|++++|++++.|++|++|++.+++....+. +...+.++.|.+++..++.+..     +..
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~   88 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD-----DKT   88 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC-----CCE
Confidence            4456788999999999999999999999999999999999988777665 4556778888887665554432     234


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~  201 (326)
                      +.+|++.      .+..+..+.+|...|.++.|+|++++|++|+.|++|++||+++++....+   ..|...+.+++++|
T Consensus        89 i~vwd~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~  159 (312)
T 4ery_A           89 LKIWDVS------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNR  159 (312)
T ss_dssp             EEEEETT------TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECT
T ss_pred             EEEEECC------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcEEEEEEcC
Confidence            4555442      34567788999999999999999999999999999999999988776554   36888999999999


Q ss_pred             CCCeEEEEeCCCeEEEeecCCcceEEEEee--ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee
Q 020461          202 DGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE  279 (326)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  279 (326)
                      ++.+|++++.|+.|++||+++++++..+..  ..++..++++|++..+++++.+.              .+++|+....+
T Consensus       160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------~i~iwd~~~~~  225 (312)
T 4ery_A          160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--------------TLKLWDYSKGK  225 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT--------------EEEEEETTTTE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC--------------eEEEEECCCCc
Confidence            999999999999999999999988887643  35688999999998877765433              23445544444


Q ss_pred             eeccccccCcceeE--EEE-CCCCceEEeecCCCcEEEeecCCCce
Q 020461          280 EIGGVKGHFGPINA--LAF-NPDGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       280 ~~~~~~~h~~~v~~--v~~-s~d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      .+..+.+|...+..  ..| .+++.+|++|+.||.|++|++.....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  271 (312)
T 4ery_A          226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI  271 (312)
T ss_dssp             EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred             EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence            45555666554322  334 47889999999999999999987643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=7.3e-32  Score=230.30  Aligned_cols=293  Identities=8%  Similarity=-0.001  Sum_probs=199.0

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET   83 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~   83 (326)
                      .+.+|...|.+++|+|||++|++|+.++ ++||+..+++.+.....  ..+..+++.++++.+ ++++.|++|++||+.+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            3478999999999999999999998775 78999988766544322  247778888888776 6678889999999999


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ++.+..+.+..++.++.+.++... ++.       ...+.++++....     ..+..+..   +...+++++  ..++.
T Consensus        91 ~~~~~~~~~~~~v~~v~~~~~~~~-~~~-------~~~i~i~d~~~~~-----~~~~~~~~---~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           91 KQDVSRIKVDAPVKDLFLSREFIV-VSY-------GDVISVFKFGNPW-----KRITDDIR---FGGVCEFSN--GLLVY  152 (355)
T ss_dssp             TEEEEEEECSSCEEEEEECSSEEE-EEE-------TTEEEEEESSTTC-----CBSSCCEE---EEEEEEEET--TEEEE
T ss_pred             CcEEEEEECCCceEEEEEcCCEEE-EEE-------cCEEEEEECCCCc-----eeeEEecc---CCceEEEEc--cEEEE
Confidence            999988888777777777654332 222       2234455443220     11111111   334456676  45554


Q ss_pred             --eeCCCcEEEEECCCCcccc------------c-cccccCcceeeEEEEEcCCCCeEEEEeCCCe-EEEeecCCcceEE
Q 020461          164 --AGEDAIVRIWDTETGKLLK------------E-SDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIK  227 (326)
Q Consensus       164 --~~~d~~i~~wd~~~~~~~~------------~-~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~  227 (326)
                        |+.||.|++||+++++...            . .....+|...|++++|+|++.+|++|+.|++ |++||+++++++.
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~  232 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR  232 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence              6899999999998764110            0 2223589999999999999999999999998 9999999999999


Q ss_pred             EEe---eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeee-Eeecc---------c-ceeeeccccccCcceeE
Q 020461          228 TYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDK---------I-LQEEIGGVKGHFGPINA  293 (326)
Q Consensus       228 ~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~---------~-~~~~~~~~~~h~~~v~~  293 (326)
                      .+.   +...+.+++|+|++..+++++.+..  +..||.+...... .....         . ..........+..+...
T Consensus       233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (355)
T 3vu4_A          233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWT--LHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK  310 (355)
T ss_dssp             EEECTTCCSCEEEEEECTTSCEEEEEETTCE--EEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred             EEEcCCCCCcEEEEEECCCCCEEEEEECCCE--EEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence            987   6778999999999988777654432  3344433221100 00000         0 00000011122334577


Q ss_pred             EEECCCCceEEeecCCCcEEEeecCCC
Q 020461          294 LAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       294 v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ++|+||++++++++.||.+++|.+.+.
T Consensus       311 ~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          311 IAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            999999999999999999999987653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.1e-32  Score=235.19  Aligned_cols=250  Identities=19%  Similarity=0.246  Sum_probs=192.2

Q ss_pred             eeEEEEccCCCE-EEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcE
Q 020461           13 LTYLKYNKDGDL-LFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus        13 i~~~~~s~~~~~-l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      ..+++++|+... +++++.||.|+||++.+.    ..+..+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            456888888764 446889999999998654    23556789999999999999 899999999999999999987532


Q ss_pred             EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC-cEEEEee
Q 020461           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAG  165 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~  165 (326)
                      ..                                             ........+.+|...|.+++|+|++ ..|++++
T Consensus       117 ~~---------------------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A          117 VL---------------------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             SS---------------------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             cc---------------------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            10                                             0002344567889999999999998 6999999


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-e-ecc-ceEEEEeCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-V-TER-PVNAVTMSP  242 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~-~~~~~~~s~  242 (326)
                      .|+.|++||+++++....+. ..+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+ . +.. .+..++|+|
T Consensus       152 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (402)
T 2aq5_A          152 CDNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS  230 (402)
T ss_dssp             TTSCEEEEETTTTEEEEEEC-TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred             CCCEEEEEECCCCCccEEEe-cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence            99999999999887765542 1368899999999999999999999999999999999998887 2 222 378999999


Q ss_pred             CCCeeEEec--CCCcceeEeecccCceeeeEeecccceee-ecc-ccccCcceeEEEECCCCceEE-eecCCCcEEEeec
Q 020461          243 LLDHVVLGG--GQDASAVTTTDHRAGKFEAKFFDKILQEE-IGG-VKGHFGPINALAFNPDGKSFS-SGGEDGYVRLHHF  317 (326)
Q Consensus       243 ~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~~h~~~v~~v~~s~d~~~la-t~s~Dg~i~l~~~  317 (326)
                      ++..++++.  +.+ ..+            ++|+...... ... ...|...|.+++|+|++++|+ +|+.||.|++|++
T Consensus       231 ~~~~l~~g~~~~~d-~~i------------~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          231 EGKILTTGFSRMSE-RQV------------ALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             TTEEEEEEECTTCC-EEE------------EEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred             CCcEEEEeccCCCC-ceE------------EEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence            977666552  222 223            3343322111 111 124667899999999999986 5668999999999


Q ss_pred             CCCc
Q 020461          318 DPDY  321 (326)
Q Consensus       318 ~~~~  321 (326)
                      +...
T Consensus       298 ~~~~  301 (402)
T 2aq5_A          298 TSEA  301 (402)
T ss_dssp             CSST
T ss_pred             cCCC
Confidence            8754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.7e-32  Score=225.84  Aligned_cols=211  Identities=20%  Similarity=0.256  Sum_probs=161.9

Q ss_pred             eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (326)
                      ..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++..                                       
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------------------------   43 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------------------------   43 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------------------------
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------------------------
Confidence            45789999999999999999999999999999999864210                                       


Q ss_pred             eeccCCCCCCCceEEEeccCccceeEEEEecC--CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-
Q 020461          126 RIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-  202 (326)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-  202 (326)
                                 ..+..+.+|.++|.+++|+|.  +.+|++|+.|++|++||+++++... .....+|...|.+++|+|+ 
T Consensus        44 -----------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~-~~~~~~h~~~v~~v~~~p~~  111 (297)
T 2pm7_B           44 -----------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ-IAVHAVHSASVNSVQWAPHE  111 (297)
T ss_dssp             -----------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC-CEEECCCSSCEEEEEECCGG
T ss_pred             -----------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE-EEEeecCCCceeEEEeCcCC
Confidence                       123346789999999999863  7899999999999999998764321 1123468899999999997 


Q ss_pred             -CCeEEEEeCCCeEEEeecCCcceE--EEE-eeccceEEEEeCCCC------------CeeEEecCCCcceeEeecccCc
Q 020461          203 -GSHFLTGSLDKSAKLWDARTLELI--KTY-VTERPVNAVTMSPLL------------DHVVLGGGQDASAVTTTDHRAG  266 (326)
Q Consensus       203 -~~~l~s~s~dg~i~iwd~~~~~~~--~~~-~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~d~~~~  266 (326)
                       +.+|++|+.|++|++||++++...  ..+ .+...+.+++|+|+.            ...+++++.|+.          
T Consensus       112 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~----------  181 (297)
T 2pm7_B          112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL----------  181 (297)
T ss_dssp             GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC----------
T ss_pred             CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc----------
Confidence             889999999999999999876321  222 345679999999973            123444444432          


Q ss_pred             eeeeEeecccce----eeeccccccCcceeEEEECCCC---ceEEeecCCCcEEEeecCCC
Q 020461          267 KFEAKFFDKILQ----EEIGGVKGHFGPINALAFNPDG---KSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       267 ~~~~~~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~---~~lat~s~Dg~i~l~~~~~~  320 (326)
                         +++|+....    .....+.+|.+.|++++|+|++   .+||+|+.|++|+||+++..
T Consensus       182 ---v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          182 ---VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ---EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ---EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence               233432221    1334577899999999999985   89999999999999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-33  Score=235.23  Aligned_cols=241  Identities=10%  Similarity=-0.017  Sum_probs=180.4

Q ss_pred             EccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcc
Q 020461           18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR   97 (326)
Q Consensus        18 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~   97 (326)
                      +.+++++|++|+.|++|++||+.+++.+..+.  .+.|.++.++|+   +++++.|++|++|+......+  +...    
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~--~~~~----  112 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI--LDSK----  112 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE--EETT----
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE--eecC----
Confidence            34678899999999999999999999888776  567888889887   999999999999998652211  1100    


Q ss_pred             eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEEEEec--CCcEEEEeeCCCcEEEEE
Q 020461           98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGP--LNRTIISAGEDAIVRIWD  174 (326)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~l~s~~~d~~i~~wd  174 (326)
                                                           .+..+.. ..+|...|.++.|+|  ++.++++++.|++|++||
T Consensus       113 -------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd  155 (343)
T 3lrv_A          113 -------------------------------------TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS  155 (343)
T ss_dssp             -------------------------------------TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEE
T ss_pred             -------------------------------------CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEE
Confidence                                                 0111111 235667899999999  999999999999999999


Q ss_pred             CCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE-EEEee--ccceEEEEeCCCCCeeEEec
Q 020461          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI-KTYVT--ERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~--~~~~~~~~~s~~~~~~~~~~  251 (326)
                      +++++......  ..|...+++++|+|++.+|++|+.||.|++||+++++.+ ..+..  ..++.+++|+|++..+++++
T Consensus       156 ~~~~~~~~~~~--~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          156 YEDDSQYIVHS--AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             SSSSCEEEEEC--CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCcEEEEEe--cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence            99887754332  235567999999999999999999999999999999887 56643  67899999999998887766


Q ss_pred             CCCcceeEeecccCceeeeEeecccceeeeccccccCccee--EEEECCCCceEEeecC-CCcEEEeecCCC
Q 020461          252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN--ALAFNPDGKSFSSGGE-DGYVRLHHFDPD  320 (326)
Q Consensus       252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~v~~s~d~~~lat~s~-Dg~i~l~~~~~~  320 (326)
                       ++  .+..||.+.....         ..+..+..|...+.  +++|+|+|++||+++. |+.|+||+++..
T Consensus       234 -~~--~v~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          234 -DQ--TVVCFDLRKDVGT---------LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             -SS--BEEEEETTSSTTC---------BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             -CC--eEEEEEcCCCCcc---------eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence             33  4555554433210         11111222434444  6999999999999998 999999998654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=241.15  Aligned_cols=264  Identities=12%  Similarity=0.113  Sum_probs=191.3

Q ss_pred             eecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      +.-...|.+++|||||+++||++.|++|+  +.+.++   .+++|...|++++|+|+|       .++++++|+.+..+ 
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-   78 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-   78 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-
Confidence            34556789999999999999999999999  655444   447899999999999887       56666666654322 


Q ss_pred             EEEEecCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc-----ceeEEEEecCCcE
Q 020461           87 LFTFNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-----RINRAVWGPLNRT  160 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~  160 (326)
                      +..+.....+.++.|+|++..+++ +.++.      +.+|+..        ..+..+. |..     .+.+++|||+|++
T Consensus        79 ~~~~~~~~~V~~vawSPdG~~LAs~s~dg~------V~iwd~~--------~~l~~l~-~~~~~~~~sv~svafSPDG~~  143 (588)
T 2j04_A           79 LLNSQPVCYPRVCKPSPIDDWMAVLSNNGN------VSVFKDN--------KMLTNLD-SKGNLSSRTYHCFEWNPIESS  143 (588)
T ss_dssp             SSTTSCSCCEEEEEECSSSSCEEEEETTSC------EEEEETT--------EEEEECC-CSSCSTTTCEEEEEECSSSSC
T ss_pred             EeecCCCCcEEEEEECCCCCEEEEEeCCCc------EEEEeCC--------ceeeecc-CCCccccccEEEEEEcCCCCE
Confidence            222233456777888887664443 33332      2233210        1333344 544     5999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCcc-------ccccc-cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce---EEEE
Q 020461          161 IISAGEDAIVRIWDTETGKL-------LKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---IKTY  229 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~-------~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~  229 (326)
                      |++|+.||+|++||+.+++.       +.++. ...+|...|.+++|+|||  +++++.|++|++||+.+++.   .+++
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee
Confidence            99999999999999988753       22221 124688999999999999  89999999999999988774   2445


Q ss_pred             e--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE--CCCCceEEe
Q 020461          230 V--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKSFSS  305 (326)
Q Consensus       230 ~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~d~~~lat  305 (326)
                      .  +...+..++|+  +..+++++ . +             .+++|+...++......+|.+.|..++|  +||+..|++
T Consensus       222 ~~~h~~~V~svaFs--g~~LASa~-~-~-------------tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          222 QNASRRKITDLKIV--DYKVVLTC-P-G-------------YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             ECCCSSCCCCEEEE--TTEEEEEC-S-S-------------EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE
T ss_pred             cccccCcEEEEEEE--CCEEEEEe-C-C-------------eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE
Confidence            3  34579999998  45555553 2 1             3566665544442333389999999999  999999999


Q ss_pred             ecCCCcEEEeecC
Q 020461          306 GGEDGYVRLHHFD  318 (326)
Q Consensus       306 ~s~Dg~i~l~~~~  318 (326)
                      +++||+ |||.++
T Consensus       285 a~edG~-klw~~d  296 (588)
T 2j04_A          285 SNKTSY-KVLLED  296 (588)
T ss_dssp             CSSCEE-EEEESS
T ss_pred             EcCCCC-EEEeec
Confidence            999999 999987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.4e-31  Score=219.18  Aligned_cols=258  Identities=12%  Similarity=0.103  Sum_probs=168.9

Q ss_pred             eEEEEccCCC---EEEeecCCCCeEEEecCCC---CeeeeccCcccceE-------------------------EEEEcC
Q 020461           14 TYLKYNKDGD---LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVW-------------------------CCDVSR   62 (326)
Q Consensus        14 ~~~~~s~~~~---~l~s~~~d~~v~iw~~~~~---~~~~~~~~h~~~V~-------------------------~~~~~~   62 (326)
                      .++.|-.-|-   .+++++.. +|++|+..++   ++++++..|..+|.                         +++++|
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp  121 (356)
T 2w18_A           43 SAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS  121 (356)
T ss_dssp             EEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred             eeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence            3444544443   57777764 8999999999   88888887776554                         455556


Q ss_pred             C----CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCce
Q 020461           63 D----SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES  138 (326)
Q Consensus        63 ~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (326)
                      |    ++.+++++.+  +++|++.+++.+.....                        ..+..++.+.+..     .++.
T Consensus       122 d~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~------------------------g~d~~V~~~~~s~-----dG~~  170 (356)
T 2w18_A          122 DDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGT------------------------LSDQQVEVMTFAE-----DGGG  170 (356)
T ss_dssp             ----CCEEEEEEEEE--EEEEEETTTEEEEEESS------------------------STTCEEEEEEECT-----TSCE
T ss_pred             CccccccEEEeCCCe--EEEEecCCCcEEEeccc------------------------CCCCcEEEEEECC-----CCce
Confidence            6    6667776643  66777766655443210                        0112222333321     2345


Q ss_pred             EEEeccCccceeEEEEec---CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE---------
Q 020461          139 VLILKGPQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF---------  206 (326)
Q Consensus       139 ~~~~~~~~~~i~~~~~~~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l---------  206 (326)
                      +..+.+|...+..++|+|   ++..|++++.|++|+|||++++++++++.....+...+.+++|+|+|.++         
T Consensus       171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence            556678888899999999   67899999999999999999999888764322233467788999999876         


Q ss_pred             ---EEEeCCCeEEEeecCCcceEEEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee
Q 020461          207 ---LTGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE  279 (326)
Q Consensus       207 ---~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  279 (326)
                         ++|+.|++|++||.++++++..+..    ......+..+..+. ++++++.|+             .+++|+..+++
T Consensus       251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~Dg-------------TIkIWDl~tGk  316 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSG-------------TIAIWDLLLGQ  316 (356)
T ss_dssp             -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTS-------------CEEEEETTTCS
T ss_pred             ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCC-------------cEEEEECCCCc
Confidence               5688999999999999988765421    11111111111111 233333332             36788888888


Q ss_pred             eeccccccCccee-EEEECCCCceEEeecCCCcEEEeec
Q 020461          280 EIGGVKGHFGPIN-ALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       280 ~~~~~~~h~~~v~-~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      .+..+.+|...+. .++|||||++||+|+.|++||||++
T Consensus       317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            8888889988766 5899999999999999999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-32  Score=238.02  Aligned_cols=243  Identities=12%  Similarity=0.127  Sum_probs=177.8

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc-----ceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +|...|.+++|||+|++||+++.||.|++|+.+.  ++..+. |..     .|.+++|||||++|++|+.||+|++||++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5688899999999999999999999999999654  666677 665     49999999999999999999999999998


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE----eccCccceeEEEEecCC
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI----LKGPQGRINRAVWGPLN  158 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~  158 (326)
                      +++..      .+          .        +                     ..+..    ..+|.++|.+++|+|++
T Consensus       160 ~~~l~------~~----------~--------~---------------------i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          160 KNSEN------TP----------E--------F---------------------YFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             CCTTT------CC----------C--------C---------------------EEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             CCccc------cc----------c--------c---------------------eeeeeeecccccccccEEEEEEcCCc
Confidence            75320      00          0        0                     00111    14677899999999998


Q ss_pred             cEEEEeeCCCcEEEEECCCCccc---cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce-EEEEeeccc
Q 020461          159 RTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTYVTERP  234 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~  234 (326)
                        +++++.|++|++||+..++..   .++.  .+|...|.+++|+  +..||+++ +++|++||+.+++. ...+.+...
T Consensus       195 --Laass~D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~  267 (588)
T 2j04_A          195 --LVAALSNNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN  267 (588)
T ss_dssp             --EEEEETTCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred             --EEEEeCCCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence              888999999999999876632   1121  3688899999999  57899887 69999999998887 444456678


Q ss_pred             eEEEEe--CCCCCeeEEecCCCcceeEeec-------ccC---ceeeeEeecccceeeeccccccCcceeEEEECCCCce
Q 020461          235 VNAVTM--SPLLDHVVLGGGQDASAVTTTD-------HRA---GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS  302 (326)
Q Consensus       235 ~~~~~~--s~~~~~~~~~~~~~~~~~~~~d-------~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~  302 (326)
                      +..+++  +|++..++++.. ++.-+...|       ...   ..-.+++|+.... ++..+.+ ...|.+++|||||+.
T Consensus       268 V~~va~~~s~d~~~La~a~e-dG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~  344 (588)
T 2j04_A          268 FHIIPLNHEKESTILLMSNK-TSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYS  344 (588)
T ss_dssp             CCEEEETTCSSCEEEEECSS-CEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSE
T ss_pred             EEEEEeeeCCCCCEEEEEcC-CCCEEEeeccEEECCCceEEEEcCCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCE
Confidence            999999  998877666553 332122111       100   0001233443222 2333333 567999999999999


Q ss_pred             EEeecC
Q 020461          303 FSSGGE  308 (326)
Q Consensus       303 lat~s~  308 (326)
                      +|+++.
T Consensus       345 lA~~~~  350 (588)
T 2j04_A          345 IAIVYD  350 (588)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-31  Score=233.51  Aligned_cols=288  Identities=15%  Similarity=0.229  Sum_probs=202.7

Q ss_pred             EEccCCCEEEeecCCCCeEEEecCCCCeeeec-cCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccC---Cc---EEE
Q 020461           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET---GA---QLF   88 (326)
Q Consensus        17 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~---~~---~~~   88 (326)
                      .|+|+++.+++++      .|+ .+++.+..+ .+|.+.|.+++|+| ++++|++|+.|++|++||+.+   +.   ...
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            4677788777665      487 567888888 88999999999999 999999999999999999976   32   344


Q ss_pred             EEecCCCcceeeeecCCeEEEE-EcCccceeceeeeeeeeccCCCC-----CCCceEEEec--c--CccceeEEE--Eec
Q 020461           89 TFNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPAD-----QGGESVLILK--G--PQGRINRAV--WGP  156 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~--~~~~i~~~~--~~~  156 (326)
                      .+.+..++.++.+.++...+++ +.+.      .+.+|++......     ..+..+..+.  .  +...+.++.  ++|
T Consensus       107 ~~~h~~~v~~~~~~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  180 (437)
T 3gre_A          107 TYDCSSTVTQITMIPNFDAFAVSSKDG------QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE  180 (437)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTS------EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred             eccCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence            4456778889999886654444 3333      3334433210000     0001111111  1  445666666  567


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe--eccc
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERP  234 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~  234 (326)
                      ++.+|++|+.|+.|++||+++++.+..+.. ..|...|++++++|++.+|++|+.||+|++||+++++++..+.  +..+
T Consensus       181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  259 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP  259 (437)
T ss_dssp             SCEEEEEEETTSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc
Confidence            899999999999999999999887765532 1278899999999999999999999999999999999988874  3457


Q ss_pred             eEEEEeCCC----CCeeEEecCCCcceeEeecccCceeeeEeecccceee------------eccccc--cCcceeEEEE
Q 020461          235 VNAVTMSPL----LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE------------IGGVKG--HFGPINALAF  296 (326)
Q Consensus       235 ~~~~~~s~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~~~~--h~~~v~~v~~  296 (326)
                      +.+++++|.    +.. +++++.|+ .+..+|.+.+.....+........            -..+.+  |...|++++|
T Consensus       260 v~~~~~~~~~s~~~~~-l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~  337 (437)
T 3gre_A          260 ITHVEVCQFYGKNSVI-VVGGSSKT-FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV  337 (437)
T ss_dssp             EEEEEECTTTCTTEEE-EEEESTTE-EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred             eEEEEeccccCCCccE-EEEEcCCC-cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence            889976654    333 44444443 455666665554333321100000            001233  8889999999


Q ss_pred             CCCCceEEeecCCCcEEEeecCCCc
Q 020461          297 NPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       297 s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      + ++++|++|+.||.|++|++....
T Consensus       338 ~-~~~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          338 S-NDKILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             E-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred             C-CceEEEecCCCCeEEEEECCCcc
Confidence            9 78999999999999999987643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-30  Score=240.73  Aligned_cols=233  Identities=19%  Similarity=0.294  Sum_probs=186.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|...|.+++|+|++++|++|+.|++|+|||+.++..+..+.+|.+.|.+++|+|++++|++++.|++|++||...
T Consensus       424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~  503 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG  503 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CcEEEEEe----cCCCcceeeeecCC---eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           84 GAQLFTFN----FDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        84 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ........    +...+.++.++++.   .++..+.+      ..+.+|++.      .+.....+.+|.+.|.+++|+|
T Consensus       504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~------~~~~~~~~~~h~~~v~~v~~sp  571 (694)
T 3dm0_A          504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLS------NCKLRSTLAGHTGYVSTVAVSP  571 (694)
T ss_dssp             CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECC------CCcEEEEEcCCCCCEEEEEEeC
Confidence            43332221    23446677777654   23333333      344555543      2356778899999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec----
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE----  232 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----  232 (326)
                      ++++|++|+.|++|++||+++++.+..+.    +...+.+++|+|++.++++++ |+.|++||+++++++..+...    
T Consensus       572 dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~  646 (694)
T 3dm0_A          572 DGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAE  646 (694)
T ss_dssp             TSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccc
Confidence            99999999999999999999988765543    446799999999987776665 667999999999888766321    


Q ss_pred             ----------------cceEEEEeCCCCCeeEEecCC
Q 020461          233 ----------------RPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       233 ----------------~~~~~~~~s~~~~~~~~~~~~  253 (326)
                                      ..+.+++|+|+++.+++++.+
T Consensus       647 ~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D  683 (694)
T 3dm0_A          647 AEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD  683 (694)
T ss_dssp             --------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence                            125789999999988776543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=8.5e-30  Score=223.14  Aligned_cols=292  Identities=11%  Similarity=0.062  Sum_probs=216.1

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-----eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      ..+.+++|+|++.++++++.|+.|++||..+++.+.     .+.+|.+.|.+++|+++++++++++.|++|++||+++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            446689999988888999999999999999998877     566899999999999999999999999999999999988


Q ss_pred             EEEEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           86 QLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .+..+.. ...+..+.+.+++..+++....    ...+.++++.      .+.....+.. ...+..++|+|+++.++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~------~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDRK------TKLEIRKTDK-IGLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETT----TTEEEEEETT------TTEEEEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEECC------CCcEEEEecC-CCCceEEEEcCCCCEEEEE
Confidence            8777653 4456777888766544333211    1233334332      2334444444 3458999999999999888


Q ss_pred             e--------CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecCCcceEEEEeeccce
Q 020461          165 G--------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPV  235 (326)
Q Consensus       165 ~--------~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  235 (326)
                      +        .|+.|++||+++++.....    .|...+.+++++|+++.+ ++++.|+.|++||+++++.+..+.....+
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~  347 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP  347 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             ECCCCccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence            7        5889999999988765543    456678999999999754 66789999999999999998888877789


Q ss_pred             EEEEeCCCCCeeEEecCCCcce--eEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC-CCcE
Q 020461          236 NAVTMSPLLDHVVLGGGQDASA--VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE-DGYV  312 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg~i  312 (326)
                      .+++++|+++.++++.......  ...... .....+++|+....+.+..+.. ...+.+++|+|||++|++++. |++|
T Consensus       348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g-~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKG-LVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             EEEEECTTSSEEEEEECCCCCTTTCTTSCC-SSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred             CeEEEcCCCCEEEEEecCCCcccccccccc-ccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence            9999999998887765432100  000000 0001344555544444444444 357899999999999987765 9999


Q ss_pred             EEeecCC
Q 020461          313 RLHHFDP  319 (326)
Q Consensus       313 ~l~~~~~  319 (326)
                      ++|+++.
T Consensus       426 ~v~~~~~  432 (433)
T 3bws_A          426 RVYRRDG  432 (433)
T ss_dssp             EEEEETT
T ss_pred             EEEEecC
Confidence            9999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.2e-31  Score=225.78  Aligned_cols=207  Identities=9%  Similarity=0.008  Sum_probs=157.8

Q ss_pred             ecCCceeEEEEccCCCEEEe--ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            8 GHERPLTYLKYNKDGDLLFS--CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      .++..+.+++|||||++|++  ++.|++|+|||.++++++..+. |.+.|.+++|+||++++++++.+ .+++|+..+++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence            35566889999999998764  5578999999999999988875 77889999999999999999865 56777777776


Q ss_pred             EEEEEe---cCCCcceeeeecCCeEEEEEcC-ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           86 QLFTFN---FDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        86 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ......   +...+..+.|++++..++.+.. ....  ..+..+.....  .........+.+|...|++++|+|++++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~--~~i~~~~~~~~--~~~~~~~~~~~~~~~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG--IVLTKISIKSG--NTSVLRSKQVTNRFKGITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC--EEEEEEEEETT--EEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce--eEEeecccccc--eecceeeeeecCCCCCeEeEEECCCCCce
Confidence            654432   2334667788887776655432 1100  01222222111  00112344567899999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~  222 (326)
                      ++|+.|++|+|||+++++.+..+  ..+|...|++++|+|||.+|||||.|++|++||+..
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~--~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIF--KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEE--TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEe--cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999998877654  247999999999999999999999999999999853

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.5e-31  Score=220.49  Aligned_cols=202  Identities=23%  Similarity=0.341  Sum_probs=153.8

Q ss_pred             eeeeecCCceeEEEEcc--CCCEEEeecCCCCeEEEecCCC--CeeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEE
Q 020461            4 ILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~   77 (326)
                      ..+++|.++|.+++|+|  ++++|++|+.|++|++||+.++  +.+..+.+|.+.|.+++|+|+  +.+|++|+.|++|+
T Consensus        51 ~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~  130 (316)
T 3bg1_A           51 ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS  130 (316)
T ss_dssp             EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEE
T ss_pred             EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEE
Confidence            45789999999999986  4899999999999999999887  456778899999999999997  78999999999999


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +||+.++.......                                                 .+.+|...+.++.|+|+
T Consensus       131 lwd~~~~~~~~~~~-------------------------------------------------~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A          131 LLTYTGEGQWEVKK-------------------------------------------------INNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             EEEECSSSCEEECC-------------------------------------------------BTTSSSSCBCCCEECCC
T ss_pred             EEecCCCCCcceee-------------------------------------------------eeccccCCcceEEEccc
Confidence            99987653211000                                                 01123333444444443


Q ss_pred             -----------------CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC----CeEEEEeCCCeEE
Q 020461          158 -----------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG----SHFLTGSLDKSAK  216 (326)
Q Consensus       158 -----------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~----~~l~s~s~dg~i~  216 (326)
                                       +++|++|+.|++|++||++............+|...|.+++|+|++    .+|++|+.|++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                             4689999999999999997543222222345899999999999986    7899999999999


Q ss_pred             EeecCCc---c-eEEEE-eeccceEEEEeCCCCCeeEEecCCC
Q 020461          217 LWDARTL---E-LIKTY-VTERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       217 iwd~~~~---~-~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      +||+++.   + ....+ .+...+.+++|+|++..+++++.+.
T Consensus       242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             EEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             EEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            9998762   1 11112 2456899999999998887765443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-31  Score=233.40  Aligned_cols=213  Identities=17%  Similarity=0.180  Sum_probs=162.8

Q ss_pred             eeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461           46 GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (326)
                      .....|...|++|+|+| ++++|++|+.||+|+|||+.+++..                                     
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------------------  155 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------------------  155 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------------------
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------------------
Confidence            34457888999999999 5678999999999999998765321                                     


Q ss_pred             eeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461          125 KRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  203 (326)
                                   ....+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.. ..+.....+...+.++++++++
T Consensus       156 -------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  221 (435)
T 4e54_B          156 -------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASS  221 (435)
T ss_dssp             -------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTT
T ss_pred             -------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCC
Confidence                         1122357889999999998 578999999999999999986543 2333333455668899999999


Q ss_pred             CeEEEEeCCCeEEEeecCCcceEEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461          204 SHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG  282 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  282 (326)
                      .+|++|+.||.|++||++..+ +..+ .+...+.+++|+|+++.++++++.|+. +..||.+....         ...+.
T Consensus       222 ~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~~---------~~~~~  290 (435)
T 4e54_B          222 RMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRG---------KASFL  290 (435)
T ss_dssp             TEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCCS---------SSCCS
T ss_pred             CEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCCceEEEEecCcce-eeEEecccccc---------cceEE
Confidence            999999999999999997644 3443 356789999999999887777666543 22333322111         11122


Q ss_pred             cccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ...+|...|++++|+|||.+|++|+.||+|+||++...
T Consensus       291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            34679999999999999999999999999999998753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.98  E-value=4.7e-30  Score=221.30  Aligned_cols=264  Identities=12%  Similarity=0.102  Sum_probs=189.2

Q ss_pred             ecCCCCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCcEEEEEe---cCCCcceeeeec-CCeEEEEEc
Q 020461           38 FADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAV-GDKLAVITT  112 (326)
Q Consensus        38 ~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~  112 (326)
                      +..+......+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+++....+.   +...+.++.|++ +...++.+.
T Consensus        59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  138 (383)
T 3ei3_B           59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS  138 (383)
T ss_dssp             HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred             cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence            334556677888999999999999998 899999999999999999888777665   456778888988 444444332


Q ss_pred             CccceeceeeeeeeeccCCCCCCCceEEEec---cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccC
Q 020461          113 DPFMELNSAIHVKRIARDPADQGGESVLILK---GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG  189 (326)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  189 (326)
                      .     +..+.+|++.       +.....+.   ++...|.+++|+|++++|++|+.|+.|++||++ ++.+..+   .+
T Consensus       139 ~-----d~~i~iwd~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---~~  202 (383)
T 3ei3_B          139 I-----RGATTLRDFS-------GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKE---KL  202 (383)
T ss_dssp             T-----TTEEEEEETT-------SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEE---EC
T ss_pred             C-----CCEEEEEECC-------CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEe---cc
Confidence            2     2234455443       12333443   345889999999999999999999999999994 4444443   46


Q ss_pred             cceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCC----cceEEEEeeccceEEEEeCC-CCCeeEEecCCCcceeEeecc
Q 020461          190 HKKTITSLAKAADGS-HFLTGSLDKSAKLWDART----LELIKTYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDH  263 (326)
Q Consensus       190 h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~d~  263 (326)
                      |...|.+++|+|++. +|++|+.|++|++||+++    +.++..+.+...+.+++|+| ++..+++++.+.  .+..+|.
T Consensus       203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~--~i~iwd~  280 (383)
T 3ei3_B          203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN--EIRVYSS  280 (383)
T ss_dssp             SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSS--EEEEEET
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCC--cEEEEEC
Confidence            889999999999999 899999999999999998    67777777788999999999 888777665433  2334444


Q ss_pred             cCceeeeEeecccc-----eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          264 RAGKFEAKFFDKIL-----QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       264 ~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +.+.....+.....     ...+.......+.+..++|+||+++  +|+.||.|+||++....
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~  341 (383)
T 3ei3_B          281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG  341 (383)
T ss_dssp             TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred             CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence            33222111110000     0000000001245566888888888  89999999999987643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.98  E-value=3.4e-30  Score=218.19  Aligned_cols=218  Identities=25%  Similarity=0.372  Sum_probs=172.1

Q ss_pred             CCCeeeeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceec
Q 020461           41 NGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN  119 (326)
Q Consensus        41 ~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (326)
                      +..+..+++||.+.|++|+|+|+ +++|+|||.|++|++||+.+++..                                
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------------------------------   74 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--------------------------------   74 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--------------------------------
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--------------------------------
Confidence            33456689999999999999997 689999999999999998764321                                


Q ss_pred             eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                                     .+.+...+++|...|.++.|+|++++|++++.|+.|++|+..........   ..+...+....+
T Consensus        75 ---------------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~  136 (340)
T 4aow_A           75 ---------------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF---VGHTKDVLSVAF  136 (340)
T ss_dssp             ---------------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEE
T ss_pred             ---------------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee---cCCCCceeEEEE
Confidence                           01234456789999999999999999999999999999999876654433   345677888899


Q ss_pred             cCCCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCe-eEEecCCCcceeEeecccCceeeeEeeccc
Q 020461          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKI  276 (326)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (326)
                      ++++.+|++|+.|+.+++||...........  +...+..++++++... ++++++.|.             .+++|+..
T Consensus       137 ~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~-------------~i~i~d~~  203 (340)
T 4aow_A          137 SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-------------LVKVWNLA  203 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS-------------CEEEEETT
T ss_pred             eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC-------------EEEEEECC
Confidence            9999999999999999999998655433322  3457888999887654 334444443             23455555


Q ss_pred             ceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          277 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       277 ~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      ..+....+.+|.++|++++|+|++++|++|+.||+|++|+++...
T Consensus       204 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            555666678899999999999999999999999999999987653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=5.2e-30  Score=221.84  Aligned_cols=231  Identities=15%  Similarity=0.180  Sum_probs=188.3

Q ss_pred             ceeeeecCCceeEEEEccC----C---CEEEeecCCCCeEEEecCCCCe-----eeeccCc-----ccceEEEEEc----
Q 020461            3 PILMKGHERPLTYLKYNKD----G---DLLFSCAKDHTPTVWFADNGER-----LGTYRGH-----NGAVWCCDVS----   61 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~----~---~~l~s~~~d~~v~iw~~~~~~~-----~~~~~~h-----~~~V~~~~~~----   61 (326)
                      ...+.+|..+|.+++|+|+    +   ++|++++.|+.|++|++.+++.     +..+.+|     ...|.+++|+    
T Consensus        55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence            3567789999999999999    9   9999999999999999999887     8888888     5899999999    


Q ss_pred             CCCCe-EEEEeCCCcEEEEEccC------CcEEE-----EEe--------cCCCcceeeeecCCeEEEEEcCccceecee
Q 020461           62 RDSMT-LITGSADQTAKLWNVET------GAQLF-----TFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        62 ~~~~~-l~s~~~d~~i~~wd~~~------~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      |++++ |++++.|+.|++||+.+      ++.+.     .+.        +...+.++.+.++. .++++..     +..
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-----dg~  208 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-----NGT  208 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-----TSE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-----CCc
Confidence            99999 99999999999999988      55443     442        35667888888877 5544432     233


Q ss_pred             eeeeeeccCCCCCCCceEEEecc---C---ccceeEEEEecCCcEEEEeeCC---CcEEEEECCCCccccccccc-----
Q 020461          122 IHVKRIARDPADQGGESVLILKG---P---QGRINRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKE-----  187 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~-----  187 (326)
                      +.++++.      .+..+..+..   |   ...|.+++|+|++.+|++++.|   +.|++||+++++.+..+...     
T Consensus       209 i~i~d~~------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~  282 (397)
T 1sq9_A          209 VQISELS------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ  282 (397)
T ss_dssp             EEEEETT------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred             EEEEECC------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence            4455442      2456677777   8   8999999999999999999999   99999999988776654310     


Q ss_pred             -----cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe------e----------------ccceEEEEe
Q 020461          188 -----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------T----------------ERPVNAVTM  240 (326)
Q Consensus       188 -----~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~----------------~~~~~~~~~  240 (326)
                           ..|...|.+++|+|++.+|++++.||.|++||+++++++..+.      .                ...+.+++|
T Consensus       283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~  362 (397)
T 1sq9_A          283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF  362 (397)
T ss_dssp             ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred             ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence                 0188999999999999999999999999999999999999887      2                578999999


Q ss_pred             CCCCC
Q 020461          241 SPLLD  245 (326)
Q Consensus       241 s~~~~  245 (326)
                      +|++.
T Consensus       363 ~~~g~  367 (397)
T 1sq9_A          363 LKKGW  367 (397)
T ss_dssp             ECTTT
T ss_pred             ccccc
Confidence            99983

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=215.84  Aligned_cols=249  Identities=18%  Similarity=0.258  Sum_probs=184.7

Q ss_pred             eeccCcccceEEEEEcCCCCeE-EEEeC---CCcEEEEEccCCcEEEE--EecCCCcceeeeecC----CeEEEEEcCcc
Q 020461           46 GTYRGHNGAVWCCDVSRDSMTL-ITGSA---DQTAKLWNVETGAQLFT--FNFDSPARSVDFAVG----DKLAVITTDPF  115 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~~~~l-~s~~~---d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~  115 (326)
                      ..+++|...|.+++|+|+++.+ ++++.   |++|++||+.+++....  ..+..++.++.|.+.    ..++..+.+. 
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-   90 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG-   90 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS-
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC-
Confidence            3457899999999999998655 55555   99999999999876543  356678888889886    3344443333 


Q ss_pred             ceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE------ecCCcEEEEeeCCCcEEEEECCCCc-ccccccccc
Q 020461          116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW------GPLNRTIISAGEDAIVRIWDTETGK-LLKESDKET  188 (326)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~  188 (326)
                           .+.+|++...     ......+.+|...|.++.|      +|+++.|++++.|+.|++||+++++ ....+....
T Consensus        91 -----~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  160 (357)
T 3i2n_A           91 -----NLHIWNLEAP-----EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ  160 (357)
T ss_dssp             -----CEEEECTTSC-----SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred             -----eEEEEeCCCC-----CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence                 3444544321     1256678899999999954      6889999999999999999998876 444443322


Q ss_pred             Cc-ceeeEEEE----EcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC---CCCeeEEecCCCcceeEe
Q 020461          189 GH-KKTITSLA----KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP---LLDHVVLGGGQDASAVTT  260 (326)
Q Consensus       189 ~h-~~~v~~v~----~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~~  260 (326)
                      ++ ...+.+++    +++++.+|++++.||.|++||++++++.....+...+.+++++|   +++.+++++.+..     
T Consensus       161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-----  235 (357)
T 3i2n_A          161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-----  235 (357)
T ss_dssp             TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-----
T ss_pred             CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-----
Confidence            22 34788887    78999999999999999999999999877777788999999999   7777776543332     


Q ss_pred             ecccCceeeeEeecccceeeecc-----ccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCC
Q 020461          261 TDHRAGKFEAKFFDKILQEEIGG-----VKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~  319 (326)
                               +++|+....+....     +.+|...|++++|+|++. +|++|+.||.|++|+++.
T Consensus       236 ---------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          236 ---------FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             ---------EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             ---------EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence                     23333332222222     348999999999999999 899999999999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5e-30  Score=217.97  Aligned_cols=240  Identities=12%  Similarity=0.053  Sum_probs=177.4

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecC---------CCCeeeecc-CcccceEEEEEcC--CCCeEEEEeCCCcEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKL   78 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~---------~~~~~~~~~-~h~~~V~~~~~~~--~~~~l~s~~~d~~i~~   78 (326)
                      ..|.++.|+|+   +++++.|++|++|+..         +++.+..+. +|.++|.+++|+|  +++++++++.|++|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45667778887   9999999999999655         455444444 6778999999999  9999999999999999


Q ss_pred             EEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        79 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      ||+++++......                                                   ..+...+.+++|+|++
T Consensus       154 wd~~~~~~~~~~~---------------------------------------------------~~~~~~i~~~~~~pdg  182 (343)
T 3lrv_A          154 QSYEDDSQYIVHS---------------------------------------------------AKSDVEYSSGVLHKDS  182 (343)
T ss_dssp             EESSSSCEEEEEC---------------------------------------------------CCSSCCCCEEEECTTS
T ss_pred             EECCCCcEEEEEe---------------------------------------------------cCCCCceEEEEECCCC
Confidence            9998876532110                                                   1233458889999999


Q ss_pred             cEEEEeeCCCcEEEEECCCCccc-cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee----cc
Q 020461          159 RTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT----ER  233 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~  233 (326)
                      .+|++|+.|+.|++||+++++.. ..+.  .+|...|++++|+|++.+|++++ |++|++||+++++++..+..    ..
T Consensus       183 ~~lasg~~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~  259 (343)
T 3lrv_A          183 LLLALYSPDGILDVYNLSSPDQASSRFP--VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF  259 (343)
T ss_dssp             CEEEEECTTSCEEEEESSCTTSCCEECC--CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---
T ss_pred             CEEEEEcCCCEEEEEECCCCCCCccEEe--ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc
Confidence            99999999999999999988766 3332  24899999999999999999999 55999999999877654431    12


Q ss_pred             ce--EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC---CCceEEeecC
Q 020461          234 PV--NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP---DGKSFSSGGE  308 (326)
Q Consensus       234 ~~--~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~---d~~~lat~s~  308 (326)
                      .+  .+++|+|++..++++++.+..             +++|+........  .  ..++..++|+|   ++..+++++.
T Consensus       260 ~~~~~~~~~~~~g~~l~~~s~~d~~-------------i~v~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~~~~~  322 (343)
T 3lrv_A          260 KTGTVTYDIDDSGKNMIAYSNESNS-------------LTIYKFDKKTKNW--T--KDEESALCLQSDTADFTDMDVVCG  322 (343)
T ss_dssp             --CCEEEEECTTSSEEEEEETTTTE-------------EEEEEECTTTCSE--E--EEEEEECCC----CCCCEEEEEEE
T ss_pred             cccceEEEECCCCCEEEEecCCCCc-------------EEEEEEcccccce--E--ecCceeEecCccccccceeEEEec
Confidence            23  369999999988886652321             2222211110000  0  04678899998   8999999999


Q ss_pred             CCcEEEeecCCCceee
Q 020461          309 DGYVRLHHFDPDYFNI  324 (326)
Q Consensus       309 Dg~i~l~~~~~~~~~~  324 (326)
                      ||.++++-...+.+++
T Consensus       323 d~~~~~~~~~~~~~~i  338 (343)
T 3lrv_A          323 DGGIAAILKTNDSFNI  338 (343)
T ss_dssp             TTEEEEEEECSSEEEE
T ss_pred             CCceEEEEecCCeEeE
Confidence            9999998877776664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.2e-31  Score=226.67  Aligned_cols=247  Identities=16%  Similarity=0.142  Sum_probs=180.2

Q ss_pred             cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC--cEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG--AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (326)
Q Consensus        49 ~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (326)
                      ..|.++|.+++|+|++++|++++.|++|++||+.++  +....+. +..++.++.|++++..++.+..     +..+.+|
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----d~~v~vw   82 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ-----DRNAYVY   82 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET-----TSSEEEC
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC-----CCeEEEE
Confidence            446779999999999999999999999999999987  4444443 3566788888887654444332     1234444


Q ss_pred             eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccC-cceeeEEEEEcCCCC
Q 020461          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG-HKKTITSLAKAADGS  204 (326)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~  204 (326)
                      ++....   .......+.+|...|.++.|+|+++.|++++.|+.|++||+++++.........+ |...|.+++|+|++.
T Consensus        83 d~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           83 EKRPDG---TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             ---------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             EcCCCC---ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence            443211   1234667788999999999999999999999999999999988764211222234 899999999999999


Q ss_pred             eEEEEeCCCeEEEeecC------------------CcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCc
Q 020461          205 HFLTGSLDKSAKLWDAR------------------TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG  266 (326)
Q Consensus       205 ~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~  266 (326)
                      +|++++.|++|++||++                  .++++..+.+...+.+++|+|++..+++++.+.            
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------  227 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS------------  227 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT------------
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC------------
Confidence            99999999999999985                  345555555566799999999998777665433            


Q ss_pred             eeeeEeecccceee----eccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          267 KFEAKFFDKILQEE----IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       267 ~~~~~~~~~~~~~~----~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                        .+++|+....+.    +..+.+|..+|.+++|+|++++|++|+.|+.+ +|..+
T Consensus       228 --~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          228 --SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             --EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             --cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence              233444433333    56678899999999999999999999877766 66655

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.4e-28  Score=212.48  Aligned_cols=269  Identities=13%  Similarity=0.101  Sum_probs=205.5

Q ss_pred             CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecCCCcceeee
Q 020461           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (326)
Q Consensus        23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  101 (326)
                      .++++++.|+.|++||+.+++.+..+..|.. +.+++|+|+++++ ++++.|++|++||+.+++.+..+.....+..+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~   81 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV   81 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence            4688899999999999999999988887754 8999999999976 6777999999999999998888877777888889


Q ss_pred             ecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEeeCCCcEEEEECCCCcc
Q 020461          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKL  180 (326)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~  180 (326)
                      ++++..++++...    ...+.++++.      .++....+..+ ..+..++|+|+++.+ ++++.|+.|++||+.+++.
T Consensus        82 spdg~~l~~~~~~----~~~v~v~d~~------~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           82 SPDGKQVYVTNMA----SSTLSVIDTT------SNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             CTTSSEEEEEETT----TTEEEEEETT------TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCEEEEEECC----CCEEEEEECC------CCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            8876654433211    1233444332      23444444443 468899999999977 6888899999999998877


Q ss_pred             ccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCC-Cccee
Q 020461          181 LKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ-DASAV  258 (326)
Q Consensus       181 ~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~  258 (326)
                      ...+.   . ...+.+++++|++.++ ++++.|+.|++||+++++++..+.....+.+++++|+++.++++... ...  
T Consensus       151 ~~~~~---~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~--  224 (391)
T 1l0q_A          151 INTVS---V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFN--  224 (391)
T ss_dssp             EEEEE---C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCC--
T ss_pred             EEEEe---c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCC--
Confidence            65543   2 2456899999999887 67788999999999999988888777788999999999988877531 111  


Q ss_pred             EeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceE-EeecCCCcEEEeecCCC
Q 020461          259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF-SSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l-at~s~Dg~i~l~~~~~~  320 (326)
                                .+++|+....+.+..+..|. .+.+++|+|++++| ++++.|+.|++|+++..
T Consensus       225 ----------~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          225 ----------TVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             ----------EEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ----------cEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence                      23445544444444445454 57899999999877 78899999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=2.1e-29  Score=215.98  Aligned_cols=248  Identities=14%  Similarity=0.144  Sum_probs=191.9

Q ss_pred             ccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc--EEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461           48 YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        48 ~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (326)
                      +..|.++|.+++|+|++++|++++.|+.|++||+.+++  ....+. +..++.++.+.+++..++.+..     +..+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----dg~i~v   78 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-----DRNAYV   78 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-----TSCEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC-----CCeEEE
Confidence            34589999999999999999999999999999999886  555554 4567888889887665554432     223444


Q ss_pred             eeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccc-ccccCcceeeEEEEEcCCC
Q 020461          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADG  203 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~h~~~v~~v~~s~~~  203 (326)
                      |++...    .......+..|...|.++.|+|++++|++++.|+.|++||++.++..... ....+|...|.+++|+|++
T Consensus        79 wd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           79 WTLKGR----TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             EEEETT----EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             EECCCC----eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            544221    11223445678899999999999999999999999999999876632111 1124688999999999999


Q ss_pred             CeEEEEeCCCeEEEeecC------------------CcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461          204 SHFLTGSLDKSAKLWDAR------------------TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~  264 (326)
                      .+|++++.||.|++||++                  +++++..+. +...+.+++++|+++.+++++.+.          
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------  224 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS----------  224 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT----------
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC----------
Confidence            999999999999999954                  567777764 456799999999988777665332          


Q ss_pred             CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          265 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                          .+++|+....+.+..+..|..+|.+++|+|++.+|++| .|+.|++|+++.
T Consensus       225 ----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          225 ----TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             ----EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             ----EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence                24455555555566677899999999999999999988 899999999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=3.6e-29  Score=219.93  Aligned_cols=255  Identities=14%  Similarity=0.169  Sum_probs=179.8

Q ss_pred             CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc-----------EEEEEec-C------------CCcceeeeecCC
Q 020461           50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA-----------QLFTFNF-D------------SPARSVDFAVGD  105 (326)
Q Consensus        50 ~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----------~~~~~~~-~------------~~~~~~~~~~~~  105 (326)
                      .|.+.|.+++|+|++++|++|+.||.|++||+.+++           ....+.. .            .++.++.|.+..
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999998776           2444443 3            668888998864


Q ss_pred             ---eEEEEEcCccceeceeeeeeeec--cCCCCCCC-------------------------ceE-EEeccCccceeEEEE
Q 020461          106 ---KLAVITTDPFMELNSAIHVKRIA--RDPADQGG-------------------------ESV-LILKGPQGRINRAVW  154 (326)
Q Consensus       106 ---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------------------~~~-~~~~~~~~~i~~~~~  154 (326)
                         .++.++.+..+.++.........  .......+                         ... ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence               45555555444333221100000  00000000                         011 224689999999999


Q ss_pred             ecCCcEEEEeeCCCcEEEEECCC-Ccccccc----ccccCcceeeEEEEEcCCC-CeEEEEeCCCeEEEeecCCcce---
Q 020461          155 GPLNRTIISAGEDAIVRIWDTET-GKLLKES----DKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLEL---  225 (326)
Q Consensus       155 ~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~----~~~~~h~~~v~~v~~s~~~-~~l~s~s~dg~i~iwd~~~~~~---  225 (326)
                      +|++++|++| .|++|++||+++ ++....+    ....+|...|.+++|+|++ .+|++|+.||+|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 799999999984 3333211    1234788999999999998 9999999999999999999886   


Q ss_pred             -EEEEeecc-------------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeeeccccccCcc
Q 020461          226 -IKTYVTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGP  290 (326)
Q Consensus       226 -~~~~~~~~-------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~  290 (326)
                       +..+....             .+.+++|+|++..+++++.   ..            +++|+... .+.+..+.+|...
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~------------v~iwd~~~~~~~~~~~~~~~~~  329 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY---LS------------VKVWDLNMENRPVETYQVHEYL  329 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES---SE------------EEEEETTCCSSCSCCEESCGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC---Ce------------EEEEeCCCCccccceeeccccc
Confidence             56665432             7999999999888776543   22            33444433 3444555666432


Q ss_pred             ---------------eeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          291 ---------------INALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       291 ---------------v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                                     +..++|+|++++|++|+.||.|+||++...
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence                           334999999999999999999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.6e-29  Score=215.97  Aligned_cols=258  Identities=14%  Similarity=0.199  Sum_probs=190.1

Q ss_pred             ccCcccceEEEEEcCC----CCeEEEEeCCCcEEEEEccCCcEEEEEe------cCCCcceeeeecC----CeEEEEEcC
Q 020461           48 YRGHNGAVWCCDVSRD----SMTLITGSADQTAKLWNVETGAQLFTFN------FDSPARSVDFAVG----DKLAVITTD  113 (326)
Q Consensus        48 ~~~h~~~V~~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~  113 (326)
                      ..+|.++|.+++|+|+    ...+++++.++.|++||+.+++.+..+.      +...+.++.|.+.    ..+++++..
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            3589999999999984    4567777777899999999887665553      2355777888876    344444332


Q ss_pred             ccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeCCCcEEEEECCCCccccccccccCcce
Q 020461          114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK  192 (326)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~  192 (326)
                           +..+.++++.      .++.+..+.+|...|.++.|+| ++.+|++++.|+.|++||+++++....+....+|..
T Consensus        94 -----dg~i~v~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  162 (366)
T 3k26_A           94 -----RGIIRIINPI------TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD  162 (366)
T ss_dssp             -----TCEEEEECTT------TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred             -----CCEEEEEEch------hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence                 2244455432      3466778889999999999999 889999999999999999998887766544457899


Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-----------------------------eccceEEEEeCCC
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-----------------------------TERPVNAVTMSPL  243 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------------------------~~~~~~~~~~s~~  243 (326)
                      .|.+++|+|++.+|++++.||.|++||+++++....+.                             +...+.+++++  
T Consensus       163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  240 (366)
T 3k26_A          163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--  240 (366)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred             ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence            99999999999999999999999999999876554332                             45678889988  


Q ss_pred             CCeeEEecCCCcceeEeecccCceeeeEeecc--cceeeeccccccCcceeEEEECCC--CceEEeecCCCcEEEeecCC
Q 020461          244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK--ILQEEIGGVKGHFGPINALAFNPD--GKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~v~~s~d--~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ++.+++++. ++. +..+|.+...........  .....+..+.+|...|++++|+|+  +++|++|+.||.|++|+++.
T Consensus       241 ~~~l~~~~~-d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          241 GDLILSKSC-ENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             TTEEEEECS-SSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             CCEEEEEec-CCE-EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence            455555443 332 334443332211111100  111335566789999999999999  99999999999999999987


Q ss_pred             C
Q 020461          320 D  320 (326)
Q Consensus       320 ~  320 (326)
                      .
T Consensus       319 ~  319 (366)
T 3k26_A          319 E  319 (366)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=5e-29  Score=211.25  Aligned_cols=248  Identities=14%  Similarity=0.152  Sum_probs=183.9

Q ss_pred             eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc----EEEEEecCCCcceeeeecCCe-EEEEEcCccceecee
Q 020461           47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA----QLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSA  121 (326)
Q Consensus        47 ~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  121 (326)
                      ...+|.+.|.+++|+|++++|++++.|+.|++||+.+++    ......+..++.++.+.+++. .++++..     +..
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~   80 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-----QGE   80 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET-----TSC
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC-----CCe
Confidence            346899999999999999999999999999999999887    555556677888899998766 4444332     223


Q ss_pred             eeeeee-ccCCCCCCCceEEEecc--CccceeEEEEecCCcEEEEeeCCCcEEEEECCC---------CccccccccccC
Q 020461          122 IHVKRI-ARDPADQGGESVLILKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTET---------GKLLKESDKETG  189 (326)
Q Consensus       122 ~~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~  189 (326)
                      +.+|.+ ..       .....+.+  |...|.++.|+| +..|++++.|+.|++||+++         ++.+..+    .
T Consensus        81 i~~wd~~~~-------~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~  148 (342)
T 1yfq_A           81 ILKVDLIGS-------PSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----K  148 (342)
T ss_dssp             EEEECSSSS-------SSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----S
T ss_pred             EEEEEeccC-------CceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE----e
Confidence            444543 22       13366778  999999999999 99999999999999999987         6555443    3


Q ss_pred             cceeeEEEEEcCCCCeEEEEeCCCeEEEeecCC-cceEE---EEeeccceEEEEeCC-CCCeeEEecCCCcceeEeeccc
Q 020461          190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIK---TYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHR  264 (326)
Q Consensus       190 h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~---~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~d~~  264 (326)
                      |...+.++++++++  +++++.|+.|++||+++ +....   ...+...+.+++++| +++.+++++.++...+..++..
T Consensus       149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            77899999999987  99999999999999998 54321   223456799999999 8887777655433222222211


Q ss_pred             CceeeeEeecccceeeecccccc---------CcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          265 AGKFEAKFFDKILQEEIGGVKGH---------FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~h---------~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      ...        ........+.+|         ...|++++|+|++++|++|+.||.|++|+++...
T Consensus       227 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          227 GDD--------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CCS--------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             Ccc--------cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            000        000112223344         4599999999999999999999999999988643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.9e-28  Score=213.97  Aligned_cols=235  Identities=17%  Similarity=0.271  Sum_probs=181.6

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      +.+|...|++++|+|+|++|++|+.|++|+||++.+++++..+.+|...|.+++++  ++.|++|+.|+++++||.....
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~  220 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE  220 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence            45678889999999999999999999999999999999999999999999998874  6799999999999999987754


Q ss_pred             E-EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEE
Q 020461           86 Q-LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TII  162 (326)
Q Consensus        86 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  162 (326)
                      . +..+. +...+..+.+.+.+..++....     +..+.++......  .....+.....|.+.|.+++|+|.+. .++
T Consensus       221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-----D~~v~i~~~~~~~--~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          221 HHVATLSGHSQEVCGLRWAPDGRHLASGGN-----DNLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESSCCS--SCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             eeeEEecccccceeeeeecCCCCeeeeeec-----cccceEEeecccc--ccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            3 33333 3445555666665554444322     1223333332211  11234556778899999999999765 554


Q ss_pred             E--eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--CCCeEEEeecCCcceEEEEe-eccceEE
Q 020461          163 S--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVNA  237 (326)
Q Consensus       163 s--~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (326)
                      +  |+.|++|++||+.+++....+.    +...+.++.+++++..+++++  .|+.|++||+.+++++..+. +...|.+
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~  369 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS  369 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            4  5679999999999988776543    345688999999999988765  79999999999999999886 5678999


Q ss_pred             EEeCCCCCeeEEecCC
Q 020461          238 VTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~  253 (326)
                      ++|+|++..+++++.+
T Consensus       370 l~~spdg~~l~S~s~D  385 (420)
T 4gga_A          370 LTMSPDGATVASAAAD  385 (420)
T ss_dssp             EEECTTSSCEEEEETT
T ss_pred             EEEcCCCCEEEEEecC
Confidence            9999999888776543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=206.31  Aligned_cols=245  Identities=21%  Similarity=0.302  Sum_probs=188.1

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceecee
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      +...++.+|.+.|.+++| +++++|++++.||.|++||+.+++....+. +...+.++.+.++...++++..     +..
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~   82 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-----DTM   82 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET-----TSC
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC-----CCe
Confidence            567789999999999999 899999999999999999998887766554 4677888889887665555432     123


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~  201 (326)
                      +.++++...   ........+.+|...|.++.|  ++..+++++.|+.|++||  .++....+   ..|...+.++++.+
T Consensus        83 i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~---~~~~~~v~~~~~~~  152 (313)
T 3odt_A           83 INGVPLFAT---SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL---QAHNASVWDAKVVS  152 (313)
T ss_dssp             EEEEETTCC---TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE---ECCSSCEEEEEEEE
T ss_pred             EEEEEeeec---CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec---ccCCCceeEEEEcc
Confidence            334433221   223456677899999999999  467999999999999999  33333333   36888999999988


Q ss_pred             -CCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce
Q 020461          202 -DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ  278 (326)
Q Consensus       202 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  278 (326)
                       ++.++++++.|+.|++||..  +....+.  +...+.+++++|++. ++++ +.++             .+++|+....
T Consensus       153 ~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~dg-------------~i~i~d~~~~  215 (313)
T 3odt_A          153 FSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISC-SNDG-------------LIKLVDMHTG  215 (313)
T ss_dssp             TTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEE-ETTS-------------EEEEEETTTC
T ss_pred             CCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEc-cCCC-------------eEEEEECCch
Confidence             89999999999999999944  4445544  566899999999887 4444 3332             2455555555


Q ss_pred             eeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          279 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       279 ~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +.+..+.+|.++|++++|+|++ .|++++.||.|++|+++...
T Consensus       216 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          216 DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred             hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence            5666678899999999999999 69999999999999987654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.4e-29  Score=213.31  Aligned_cols=218  Identities=20%  Similarity=0.254  Sum_probs=166.1

Q ss_pred             CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceecee
Q 020461           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      |+++..+.+|.+.|.+++|+|++++|++++.|++|++||+..+..                                   
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------------------   45 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----------------------------------   45 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----------------------------------
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-----------------------------------
Confidence            355677899999999999999999999999999999999863221                                   


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecC--CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                                     .....+.+|...|.+++|+|+  +.+|++++.|+.|++||+++++... .....+|...|.+++|
T Consensus        46 ---------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~  109 (379)
T 3jrp_A           46 ---------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ-IAVHAVHSASVNSVQW  109 (379)
T ss_dssp             ---------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEE
T ss_pred             ---------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE-eeeecCCCcceEEEEe
Confidence                           122345678889999999977  8999999999999999998876221 1223468899999999


Q ss_pred             cCC--CCeEEEEeCCCeEEEeecCCcceEEEE---eeccceEEEEeCC-------------CCCeeEEecCCCcceeEee
Q 020461          200 AAD--GSHFLTGSLDKSAKLWDARTLELIKTY---VTERPVNAVTMSP-------------LLDHVVLGGGQDASAVTTT  261 (326)
Q Consensus       200 s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~s~-------------~~~~~~~~~~~~~~~~~~~  261 (326)
                      +|+  +.+|++++.|+.|++||+++.......   .+...+.+++|+|             ++..+++++.+..  +..+
T Consensus       110 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~i~  187 (379)
T 3jrp_A          110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL--VKIW  187 (379)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC--EEEE
T ss_pred             CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe--EEEE
Confidence            999  999999999999999999987433322   3456899999999             4666555543332  2233


Q ss_pred             cccCceeeeEeecccceeeeccccccCcceeEEEECCC---CceEEeecCCCcEEEeecCCC
Q 020461          262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD---GKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       262 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d---~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      |.+.+.        ........+.+|...|.+++|+|+   +.+|++++.||.|+||+++..
T Consensus       188 d~~~~~--------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          188 KYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             EecCCC--------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            322211        112233456789999999999999   899999999999999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.7e-28  Score=209.62  Aligned_cols=238  Identities=15%  Similarity=0.185  Sum_probs=179.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEE--cCCCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~--~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      ..+.+|...|.+++|+|++++|++++.|+.|++|++.+++.+. +.+|...|.+++|  ++++++|++++.|++|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            5688999999999999999999999999999999999888765 5679999999999  899999999999999999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe-ccCccceeEEEEecCCc-
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNR-  159 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-  159 (326)
                      .+++.+..+........+.+... .+++...+..      +.++.+...     ....... ..+...+.++.+.+... 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (368)
T 3mmy_A          159 RSSNPMMVLQLPERCYCADVIYP-MAVVATAERG------LIVYQLENQ-----PSEFRRIESPLKHQHRCVAIFKDKQN  226 (368)
T ss_dssp             SCSSCSEEEECSSCEEEEEEETT-EEEEEEGGGC------EEEEECSSS-----CEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred             CCCcEEEEEecCCCceEEEecCC-eeEEEeCCCc------EEEEEeccc-----cchhhhccccccCCCceEEEcccCCC
Confidence            99988777776655555544433 3333333322      222322211     1111111 12233445555554443 


Q ss_pred             ---EEEEeeCCCcEEEEECCCCccccccccccCcce------------eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461          160 ---TIISAGEDAIVRIWDTETGKLLKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       160 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~------------~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                         .+++++.|+.|++||++............+|..            .|++++|+|++.+|++|+.||.|++||+++++
T Consensus       227 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART  306 (368)
T ss_dssp             CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence               399999999999999987643222222334554            79999999999999999999999999999999


Q ss_pred             eEEEEee-ccceEEEEeCCCCCeeEEecCCC
Q 020461          225 LIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       225 ~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      ++..+.. ...+.+++|+|++..++++++++
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          307 KLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             EEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            9888763 67899999999999988887654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6e-28  Score=209.47  Aligned_cols=230  Identities=16%  Similarity=0.259  Sum_probs=185.5

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-CcE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQ   86 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~   86 (326)
                      .|...|.+++|+|++++|++|+.||.|++|++.+++.+..+.+|...|.+++|  +++++++++.|+.|++||++. ...
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence            37889999999999999999999999999999999999999999999999999  457999999999999999984 444


Q ss_pred             EEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEe
Q 020461           87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISA  164 (326)
Q Consensus        87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~  164 (326)
                      ...+. +...+.++.+++++..++.+..     +..+.+|++.      .+.....+.+|...|.+++|+|++. .++++
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~  278 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGN-----DNVVQIWDAR------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATG  278 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETT------CSSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeC-----CCeEEEccCC------CCCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence            44443 4567788888887665554432     2234445443      2456777888999999999999775 66665


Q ss_pred             e--CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEE--EeCCCeEEEeecCCcceEEEEe---eccceEE
Q 020461          165 G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTYV---TERPVNA  237 (326)
Q Consensus       165 ~--~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~  237 (326)
                      +  .|+.|++||+++++....+.    +...+.+++|+|++.++++  |+.||.|++||+++++......   +...+.+
T Consensus       279 ~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~  354 (401)
T 4aez_A          279 GGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY  354 (401)
T ss_dssp             CCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE
Confidence            5  79999999999888776553    5678999999999999999  4489999999999876655532   4567999


Q ss_pred             EEeCCCCCeeEEecCCC
Q 020461          238 VTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~  254 (326)
                      ++|+|++..+++++.++
T Consensus       355 ~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          355 SALSPDGRILSTAASDE  371 (401)
T ss_dssp             EEECTTSSEEEEECTTS
T ss_pred             EEECCCCCEEEEEeCCC
Confidence            99999998887765543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.2e-28  Score=208.75  Aligned_cols=216  Identities=16%  Similarity=0.247  Sum_probs=164.7

Q ss_pred             eeeeecCCceeEEEEcc--CCCEEEeecCCCCeEEEecCCC---------CeeeeccCcccceEEEEEcCC--CCeEEEE
Q 020461            4 ILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRD--SMTLITG   70 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~---------~~~~~~~~h~~~V~~~~~~~~--~~~l~s~   70 (326)
                      ..+.+|...|.+++|+|  ++++|++++.|++|++|++.++         +.+..+.+|.+.|.+++|+|+  +++|+++
T Consensus        51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  130 (351)
T 3f3f_A           51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL  130 (351)
T ss_dssp             EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe
Confidence            34678999999999999  6999999999999999999887         457788899999999999999  9999999


Q ss_pred             eCCCcEEEEEccCCcEEEEEe--------------cCCCcceeeeecC---CeEEEEE-cCccceeceeeeeeeeccCCC
Q 020461           71 SADQTAKLWNVETGAQLFTFN--------------FDSPARSVDFAVG---DKLAVIT-TDPFMELNSAIHVKRIARDPA  132 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  132 (326)
                      +.|++|++||+.+++.+..+.              ....+.++.+.+.   ...++++ .+..      +..+..    .
T Consensus       131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------~~~~~~----~  200 (351)
T 3f3f_A          131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA------IIYQRG----K  200 (351)
T ss_dssp             ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE------EEEEEC----T
T ss_pred             cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc------EEEEcc----C
Confidence            999999999998876432221              1234455666653   3333333 2221      111111    1


Q ss_pred             CCCCceEEEeccCccceeEEEEecCC----cEEEEeeCCCcEEEEECCCCccc---------------------------
Q 020461          133 DQGGESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGKLL---------------------------  181 (326)
Q Consensus       133 ~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~s~~~d~~i~~wd~~~~~~~---------------------------  181 (326)
                      .........+.+|...|.+++|+|++    .+|++|+.|+.|++||++++...                           
T Consensus       201 ~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
T 3f3f_A          201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS  280 (351)
T ss_dssp             TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred             CCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence            11123466778899999999999998    89999999999999999764211                           


Q ss_pred             ----------------cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          182 ----------------KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       182 ----------------~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                                      ..+....+|...|++++|+|++.+|++|+.||.|++||+.+++....+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                            111223468899999999999999999999999999999987765554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-27  Score=202.60  Aligned_cols=236  Identities=14%  Similarity=0.172  Sum_probs=192.1

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC-----CcEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKL   78 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~   78 (326)
                      ..+.+|...|.+++|+|++++|++++.|+.|++|++.+++.+..+. |...|.+++|+|+++++++++.+     +.|++
T Consensus        68 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~  146 (369)
T 3zwl_B           68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI  146 (369)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred             hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence            4677899999999999999999999999999999999999988887 88899999999999999999999     99999


Q ss_pred             EEccCCcEEE-----------EE-ecCC--CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           79 WNVETGAQLF-----------TF-NFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        79 wd~~~~~~~~-----------~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      ||+..+....           .+ .+..  .+.++.+.++...++++..     +..+.++++..     .......+..
T Consensus       147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~-----~~~~~~~~~~  216 (369)
T 3zwl_B          147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----DGKISKYDVSN-----NYEYVDSIDL  216 (369)
T ss_dssp             EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----TSEEEEEETTT-----TTEEEEEEEC
T ss_pred             EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----CCEEEEEECCC-----CcEeEEEEec
Confidence            9997654211           11 1112  5566677776655544332     22344444321     1456777888


Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC-----------
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----------  213 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-----------  213 (326)
                      |...|.+++|+|++.+|++++.|+.|++||+++++....+.    +...+.+++++|++.++++++.++           
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  292 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE  292 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-----------
T ss_pred             CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence            99999999999999999999999999999999888766553    567899999999999999999998           


Q ss_pred             ---eEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCC
Q 020461          214 ---SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       214 ---~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                         .+++||.++++.+..+. +...+.+++|+|+++.+++++.++
T Consensus       293 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             --CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence               89999999999988876 457899999999998777765443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=7.4e-27  Score=201.74  Aligned_cols=242  Identities=10%  Similarity=0.075  Sum_probs=186.0

Q ss_pred             eeecCCceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEE-EeCCCcEEEEEccC
Q 020461            6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVET   83 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-~~~d~~i~~wd~~~   83 (326)
                      +.+| ..+.+++|+|++++| ++++.|+.|++||..+++.+..+..+. .+.+++|+|++++++. ++.|++|++||+.+
T Consensus        28 ~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~  105 (391)
T 1l0q_A           28 IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (391)
T ss_dssp             EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence            4444 458999999999976 678899999999999999988887665 8999999999998754 45679999999999


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEE-EEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-  161 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-  161 (326)
                      ++.+..+........+.+++++..+ +....     ...+.++++.      .++....+..+ ..+..+.|+|+++.+ 
T Consensus       106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~~~dg~~l~  173 (391)
T 1l0q_A          106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-----DKTVSVINTV------TKAVINTVSVG-RSPKGIAVTPDGTKVY  173 (391)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSSEEEEEETT-----TTEEEEEETT------TTEEEEEEECC-SSEEEEEECTTSSEEE
T ss_pred             CeEEEEEeCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEECC------CCcEEEEEecC-CCcceEEECCCCCEEE
Confidence            9888777776677778888776644 33322     1233444332      23445555544 456899999999877 


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---CCCeEEEeecCCcceEEEEeeccceEEE
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTYVTERPVNAV  238 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~  238 (326)
                      ++++.++.|++||+++++....+.    +...+.+++++|++.++++++   .++.|++||+++++.+..+.....+.++
T Consensus       174 ~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  249 (391)
T 1l0q_A          174 VANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI  249 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEE
Confidence            677889999999999887655442    456789999999999999888   6899999999999988888777778899


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCc
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAG  266 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~  266 (326)
                      +++|+++.++++++.++ .+..+|...+
T Consensus       250 ~~s~dg~~l~~s~~~d~-~v~v~d~~~~  276 (391)
T 1l0q_A          250 AVTPDGKKVYVALSFXN-TVSVIDTATN  276 (391)
T ss_dssp             EECTTSSEEEEEETTTT-EEEEEETTTT
T ss_pred             EEccCCCEEEEEcCCCC-EEEEEECCCC
Confidence            99999998877655443 3444554443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-28  Score=229.65  Aligned_cols=202  Identities=20%  Similarity=0.328  Sum_probs=164.4

Q ss_pred             eeeeecCCceeEEEEccC--CCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCC--CCeEEEEeCCCcEE
Q 020461            4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK   77 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~d~~i~   77 (326)
                      ..+.+|..+|.+++|+|+  +++|++|+.||+|++|++.++.  .+..+.+|...|.+++|+|+  ++.+++|+.||+|+
T Consensus        47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  126 (753)
T 3jro_A           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS  126 (753)
T ss_dssp             EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence            467889999999999988  9999999999999999999886  67788899999999999999  99999999999999


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-  156 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  156 (326)
                      +||+.++...                                                  ....+.+|...|.++.|+| 
T Consensus       127 vwdl~~~~~~--------------------------------------------------~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A          127 VVEFKENGTT--------------------------------------------------SPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEECCSSSCC--------------------------------------------------CCEEEECCSSCEEEEEECCC
T ss_pred             EEEeecCCCc--------------------------------------------------ceeEeecCCCceEEEEecCc
Confidence            9999765321                                                  0112345667788888888 


Q ss_pred             ------------CCcEEEEeeCCCcEEEEECCCCcccc-ccccccCcceeeEEEEEcCC---CCeEEEEeCCCeEEEeec
Q 020461          157 ------------LNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       157 ------------~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~---~~~l~s~s~dg~i~iwd~  220 (326)
                                  ++..+++|+.||+|++||++++.... ......+|...|++++|+|+   +.+|++|+.||.|++||+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence                        58899999999999999998764321 12233578999999999999   899999999999999999


Q ss_pred             CCcceE-----E-EEeeccceEEEEeCCCCCeeEEecCCCc
Q 020461          221 RTLELI-----K-TYVTERPVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       221 ~~~~~~-----~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                      ++++..     . ...+...+.+++|+|++..+++++.++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred             CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence            986321     1 1124567889999999988877765443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=6.4e-29  Score=214.98  Aligned_cols=216  Identities=9%  Similarity=0.037  Sum_probs=148.5

Q ss_pred             eeeecCCceeEEEEcc--------CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCC-eEEEEeCCCc
Q 020461            5 LMKGHERPLTYLKYNK--------DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQT   75 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~--------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~   75 (326)
                      .+.||.+.|.+++|+|        |+++|||||.|++|+|||+.++..+..+.+|..+|.+++|+|++. +|++++.|++
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence            3679999999999998        899999999999999999999888888889999999999999874 7999999999


Q ss_pred             EEEEEccCCcEEEEEecCCC-cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE
Q 020461           76 AKLWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (326)
                      |++||+.+++.......... .....+.       ...                     ..........+|...+.++.|
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s-------~~~---------------------~~~~~~~~~~~~~~~v~~v~~  262 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLT-------LNT---------------------LPLVNTCHSSGIASSLANVRW  262 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEE-------EES---------------------GGGC------CCSSSCSEEEE
T ss_pred             EEEEECCCCcccccccccCCcccceEEe-------ccc---------------------ccceeeeecccccccceeeee
Confidence            99999998776443221100 0000000       000                     000112234578888999998


Q ss_pred             e-cCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEE------------------EEEcC--CCCeEEEEeCCC
Q 020461          155 G-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS------------------LAKAA--DGSHFLTGSLDK  213 (326)
Q Consensus       155 ~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~------------------v~~s~--~~~~l~s~s~dg  213 (326)
                      + |+++.+++++.|+++++||+.+++....+.   .|...+..                  ..+++  ++.++++|+.||
T Consensus       263 ~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg  339 (393)
T 4gq1_A          263 IGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG  339 (393)
T ss_dssp             ETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred             ecCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC
Confidence            7 789999999999999999998766543322   22222222                  22222  444677889999


Q ss_pred             eEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEec
Q 020461          214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       214 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~  251 (326)
                      +|++||+.+++++.... +..+|.+++|+|+++.++++.
T Consensus       340 ~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          340 LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence            99999999988876654 567899999999999988764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-26  Score=204.75  Aligned_cols=232  Identities=14%  Similarity=0.096  Sum_probs=181.7

Q ss_pred             eecCCceeEEEEccCCCEE-EeecCCCCeEEEecC--CCCeeeecc--CcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            7 KGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFAD--NGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~--~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      .+|...|.+++|+|++++| ++++.|++|++|++.  +++.+..+.  .|...|.+++|+|++++|++++.|+.|++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4677789999999999996 899999999999999  888888886  56788999999999999999999999999999


Q ss_pred             cCCcEEE----EE-ecCCCcceeeeecC---CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEE
Q 020461           82 ETGAQLF----TF-NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRA  152 (326)
Q Consensus        82 ~~~~~~~----~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~  152 (326)
                      .+++...    .+ .+...+.++.|+++   ...++.+..     +..+.+|++..      +..+.. +.+|.+.|.++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-----d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~  247 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-----DEHIKISHYPQ------CFIVDKWLFGHKHFVSSI  247 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-----TSCEEEEEESC------TTCEEEECCCCSSCEEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-----CCcEEEEECCC------CceeeeeecCCCCceEEE
Confidence            8765432    22 34567788889987   666555432     23455565532      234444 66899999999


Q ss_pred             EEecCCcEEEEeeCCCcEEEEECCCCccccccccc----------------------cCcceeeEEEEEcCCCCeEEEEe
Q 020461          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----------------------TGHKKTITSLAKAADGSHFLTGS  210 (326)
Q Consensus       153 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----------------------~~h~~~v~~v~~s~~~~~l~s~s  210 (326)
                      +|+ ++++|++++.|++|++||+++++.+..+...                      ......+.+++++|++.+|++++
T Consensus       248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            999 9999999999999999999998876554311                      02345689999999999999999


Q ss_pred             -CCCeEEEeec--CCc---ceEEEEeeccceEEEEeCCCCCeeEEec
Q 020461          211 -LDKSAKLWDA--RTL---ELIKTYVTERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       211 -~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~  251 (326)
                       .|+.|++||+  .++   +.+..+.....+.+++|+|. ..+++.+
T Consensus       327 ~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~v~~~  372 (450)
T 2vdu_B          327 EATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND-EFQVTLD  372 (450)
T ss_dssp             TTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT-EEEEEEC
T ss_pred             CCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC-cEEEEEe
Confidence             8999999999  555   66666666678999999994 3444433

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=2e-27  Score=208.02  Aligned_cols=220  Identities=19%  Similarity=0.283  Sum_probs=168.4

Q ss_pred             eeccCcccceEEEEEcCC-CCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461           46 GTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        46 ~~~~~h~~~V~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (326)
                      .....|.+.|++++|+|+ +++|++++.||.|++||+.+....       +.                            
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~-------~~----------------------------  166 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK-------PE----------------------------  166 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS-------CC----------------------------
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc-------cC----------------------------
Confidence            344679999999999997 678999999999999998753110       00                            


Q ss_pred             eeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCcccc----ccccccCcceeeEEEEE
Q 020461          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLK----ESDKETGHKKTITSLAK  199 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~h~~~v~~v~~  199 (326)
                             ..........+.+|...+.+++|+|++. .|++|+.||.|++||++++....    ......+|...|.+++|
T Consensus       167 -------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  239 (430)
T 2xyi_A          167 -------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW  239 (430)
T ss_dssp             -------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEE
T ss_pred             -------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEE
Confidence                   0011234455678899999999999988 99999999999999998743211    12233478899999999


Q ss_pred             cC-CCCeEEEEeCCCeEEEeecCCc---ceEEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeec
Q 020461          200 AA-DGSHFLTGSLDKSAKLWDARTL---ELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD  274 (326)
Q Consensus       200 s~-~~~~l~s~s~dg~i~iwd~~~~---~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (326)
                      +| ++.+|++++.||.|++||++++   +.+..+ .+...+++++|+|++..++++++.++. +..+|.+..        
T Consensus       240 ~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~--------  310 (430)
T 2xyi_A          240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNL--------  310 (430)
T ss_dssp             CSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCT--------
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCC--------
Confidence            99 6788999999999999999987   455555 356789999999999876666655542 333443321        


Q ss_pred             ccceeeeccccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCC
Q 020461          275 KILQEEIGGVKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       275 ~~~~~~~~~~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~  319 (326)
                         ...+..+.+|.+.|.+++|+|+++ +|++++.||+|+||++..
T Consensus       311 ---~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          311 ---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ---TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             ---CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence               233455678999999999999996 699999999999999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1e-26  Score=203.95  Aligned_cols=225  Identities=24%  Similarity=0.399  Sum_probs=177.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+.+|...|.+++|  ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|++  ..+++|+.|++|++||+.+
T Consensus       167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS
T ss_pred             EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC
Confidence            467789999999988  788999999999999999999999999999999999999974  5899999999999999988


Q ss_pred             CcEEE---EE-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           84 GAQLF---TF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        84 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      ++...   .+ .+...+.++.+ .+..++.++.+.      .+.++++.      .+..+..+.+|...|.++.++  +.
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg------~i~vwd~~------~~~~~~~~~~~~~~v~~~~~~--~~  307 (435)
T 1p22_A          243 PTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDR------TIKVWNTS------TCEFVRTLNGHKRGIACLQYR--DR  307 (435)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTS------EEEEEETT------TCCEEEEEECCSSCEEEEEEE--TT
T ss_pred             CCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCC------eEEEEECC------cCcEEEEEcCCCCcEEEEEeC--CC
Confidence            76542   22 23445556666 444555444433      34444432      346777888999999999885  57


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc---------eEEEEe
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---------LIKTYV  230 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~  230 (326)
                      .+++|+.|+.|++||+++++.+..+   .+|...|.++++  ++.+|++|+.||.|++||+++++         ++..+.
T Consensus       308 ~l~~g~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  382 (435)
T 1p22_A          308 LVVSGSSDNTIRLWDIECGACLRVL---EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  382 (435)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEE---eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc
Confidence            9999999999999999998877655   368899999998  78899999999999999998776         666664


Q ss_pred             -eccceEEEEeCCCCCeeEEecCCCc
Q 020461          231 -TERPVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       231 -~~~~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                       +...+.++++  ++..+++ ++.|+
T Consensus       383 ~h~~~v~~l~~--~~~~l~s-~s~Dg  405 (435)
T 1p22_A          383 EHSGRVFRLQF--DEFQIVS-SSHDD  405 (435)
T ss_dssp             CCSSCCCCEEE--CSSCEEE-CCSSS
T ss_pred             CCCCCeEEEEe--CCCEEEE-EeCCC
Confidence             4567888888  4455544 44443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=8.3e-27  Score=202.09  Aligned_cols=287  Identities=14%  Similarity=0.205  Sum_probs=181.0

Q ss_pred             ecCCceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC---CCeEEEEeCCCcEEEEEccC
Q 020461            8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         8 ~h~~~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~d~~i~~wd~~~   83 (326)
                      +|...|.+++|+| ++++|++++.|+.|++|++.+++.+..+. +...+.++.+++.   +.++++++.|+.|++||+.+
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            5999999999999 77899999999999999999998887775 6788999999884   44999999999999999999


Q ss_pred             CcEEEEEe-cCCCcceeeeecCCe--EEEEEcCccceeceeeeeeeeccCCC----------CCCCceEEEeccCcccee
Q 020461           84 GAQLFTFN-FDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPA----------DQGGESVLILKGPQGRIN  150 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~  150 (326)
                      ++.+..+. +..++.++.+.++..  ++..+.+..      +.++++.....          ...........+|...|.
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSR------VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC------EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc------EEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            88777765 456778888887665  333333332      33333321100          000011112257888999


Q ss_pred             EEEEecCCcEEEEeeCCCcEEEEECCCCccccccccc--cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461          151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (326)
Q Consensus       151 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (326)
                      +++|+|++++|++++.|+.|++||+++++........  ......+........+..+++++.|+.|++||+.+++++..
T Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~  329 (408)
T 4a11_B          250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM  329 (408)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence            9999999999999999999999999987764432211  01111222222334456788888999999999999999988


Q ss_pred             Ee-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEEee
Q 020461          229 YV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSG  306 (326)
Q Consensus       229 ~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~lat~  306 (326)
                      +. +...+.+++|+|++..+++++.+..              +++|+....+.+.....+   -....++| +...+.++
T Consensus       330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~--------------i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  392 (408)
T 4a11_B          330 LKGHYKTVDCCVFQSNFQELYSGSRDCN--------------ILAWVPSLYEPVPDDDET---TTKSQLNPAFEDAWSSS  392 (408)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSC--------------EEEEEECC------------------------------
T ss_pred             eccCCCeEEEEEEcCCCCEEEEECCCCe--------------EEEEeCCCCCccCCCCce---Eeccccccccceeeccc
Confidence            86 5578999999999988776654332              344444443333222211   22233443 44557788


Q ss_pred             cCCCcEEEeecC
Q 020461          307 GEDGYVRLHHFD  318 (326)
Q Consensus       307 s~Dg~i~l~~~~  318 (326)
                      +.|+.+++|+.+
T Consensus       393 ~~~~~~~~W~~~  404 (408)
T 4a11_B          393 DEEGGTSAWSHP  404 (408)
T ss_dssp             ------------
T ss_pred             CccCceeecCCc
Confidence            889999999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=3e-26  Score=195.51  Aligned_cols=248  Identities=10%  Similarity=0.072  Sum_probs=161.8

Q ss_pred             EEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCcc
Q 020461           36 VWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF  115 (326)
Q Consensus        36 iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (326)
                      ||...+...+....+|.+.|.+++|+||+++|++|+.|+ +++||+++++......+. .+..+.+.+.....++.+.. 
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-   79 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGV-   79 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSS-
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECC-
Confidence            566667777777889999999999999999999888775 789999887766554443 34555555544444332221 


Q ss_pred             ceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCC-ccccccccccCcceee
Q 020461          116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTI  194 (326)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~h~~~v  194 (326)
                         ...+.+|+..      .++.+..+. +...|.++.++++.  ++.+ .|+.|++||+.++ +.+..+..      ..
T Consensus        80 ---d~~v~iWd~~------~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~  140 (355)
T 3vu4_A           80 ---KEVVHIWDDV------KKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------FG  140 (355)
T ss_dssp             ---TTEEEEEETT------TTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------EE
T ss_pred             ---ccEEEEEECC------CCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------CC
Confidence               1244555542      234555554 56689999998864  3333 4789999999887 55554421      33


Q ss_pred             EEEEEcCCCCeEEE--EeCCCeEEEeecCCcc----------------eEEEEe-eccceEEEEeCCCCCeeEEecCCCc
Q 020461          195 TSLAKAADGSHFLT--GSLDKSAKLWDARTLE----------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       195 ~~v~~s~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                      ..+++++  .+++.  |+.||.|++||+++++                ++..+. +...+.+++|+|++..+++++. |+
T Consensus       141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-d~  217 (355)
T 3vu4_A          141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-DG  217 (355)
T ss_dssp             EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-TC
T ss_pred             ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-CC
Confidence            3445566  45665  6899999999999865                134443 5678999999999887776543 33


Q ss_pred             ceeEeecccCceeeeEeecccceeeecccc-c-cCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          256 SAVTTTDHRAGKFEAKFFDKILQEEIGGVK-G-HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ..            +++|+...++.+..+. + |.+.|++++|+||+++||+|+.|++|+||+++..
T Consensus       218 ~~------------v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          218 TI------------IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             SE------------EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CE------------EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            21            3456555555556666 5 9999999999999999999999999999999765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=6e-27  Score=193.09  Aligned_cols=198  Identities=16%  Similarity=0.145  Sum_probs=138.1

Q ss_pred             ceeEEEEccC----CCEEEeecC--------------------CCCeEEEec-CCCCeeeeccCcccceEEEEEcC---C
Q 020461           12 PLTYLKYNKD----GDLLFSCAK--------------------DHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSR---D   63 (326)
Q Consensus        12 ~i~~~~~s~~----~~~l~s~~~--------------------d~~v~iw~~-~~~~~~~~~~~h~~~V~~~~~~~---~   63 (326)
                      .|..++|+||    ++++++++.                    |+.|++|++ .+|+.+..+.+|...+..++|++   +
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~  192 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM  192 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence            5678888888    777777553                    888888888 45777777778888888888888   6


Q ss_pred             CCeEEEEeCCCcEEEEEccCCcEEEEEecC-C---CcceeeeecCCeEEEEEcCcc-------ceeceeeeeeeeccCCC
Q 020461           64 SMTLITGSADQTAKLWNVETGAQLFTFNFD-S---PARSVDFAVGDKLAVITTDPF-------MELNSAIHVKRIARDPA  132 (326)
Q Consensus        64 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  132 (326)
                      ++.|++++.|++||+||+++++.+..+..+ .   .+..+.|+++...++....+.       ...+..+.++..     
T Consensus       193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~-----  267 (356)
T 2w18_A          193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP-----  267 (356)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET-----
T ss_pred             CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC-----
Confidence            688999999999999999999998888632 1   233446888877765543211       111223333332     


Q ss_pred             CCCCceEEEe-----ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeE-EEEEcCCCCeE
Q 020461          133 DQGGESVLIL-----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHF  206 (326)
Q Consensus       133 ~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l  206 (326)
                       .++..+..+     .+|.....+..+  .+..+++++.|++|+|||+.+++++.++.   +|...+. +++|+|||++|
T Consensus       268 -~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          268 -KTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             -TTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECSSSSEE
T ss_pred             -CCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECCCCCEE
Confidence             123333332     355554433333  36789999999999999999999887663   6766554 58999999999


Q ss_pred             EEEeCCCeEEEeec
Q 020461          207 LTGSLDKSAKLWDA  220 (326)
Q Consensus       207 ~s~s~dg~i~iwd~  220 (326)
                      ++|+.|++||+||+
T Consensus       342 aSGS~D~TIklWd~  355 (356)
T 2w18_A          342 LAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             EEEECCCcEEEecC
Confidence            99999999999995

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=5.7e-25  Score=192.45  Aligned_cols=282  Identities=12%  Similarity=0.104  Sum_probs=200.2

Q ss_pred             cCCceeEEE---EccCCCEEEe--------------ecCCCCeEEEecC--CC--CeeeeccCcccceEEEEEcCCCCeE
Q 020461            9 HERPLTYLK---YNKDGDLLFS--------------CAKDHTPTVWFAD--NG--ERLGTYRGHNGAVWCCDVSRDSMTL   67 (326)
Q Consensus         9 h~~~i~~~~---~s~~~~~l~s--------------~~~d~~v~iw~~~--~~--~~~~~~~~h~~~V~~~~~~~~~~~l   67 (326)
                      ....+..++   |+|+++.++.              ++.++.++||.+.  ++  +.+..+..+. .+.+++|+|+++++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  137 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA  137 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence            344567777   8888776553              3344444555543  34  4455555543 45689999977788


Q ss_pred             EEEeCCCcEEEEEccCCcEEEEEe------cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE
Q 020461           68 ITGSADQTAKLWNVETGAQLFTFN------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (326)
Q Consensus        68 ~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (326)
                      ++++.|++|++||+.+++......      +...+.++.+.+++.+++....     ...+.++++.      .+.....
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-----d~~v~~~d~~------~~~~~~~  206 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-----ANAVHVFDLK------TLAYKAT  206 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-----GTEEEEEETT------TCCEEEE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC-----CCEEEEEECC------CceEEEE
Confidence            888899999999999988775432      1234556677766666655432     2234444432      3456666


Q ss_pred             eccCccceeEEEEecCCcEEE-EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--------CC
Q 020461          142 LKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--------LD  212 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--------~d  212 (326)
                      +..|...+.+++|+|+++.++ +++.|+.|++||+++++....+.    +...+.+++++|++.++++++        .|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d  282 (433)
T 3bws_A          207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIGLPRGLLLSKDGKELYIAQFSASNQESGG  282 (433)
T ss_dssp             EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----CCSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----CCCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence            778888999999999998775 55589999999999887765443    234589999999999999988        58


Q ss_pred             CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCccee
Q 020461          213 KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN  292 (326)
Q Consensus       213 g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  292 (326)
                      +.|++||+++++.+..+.....+..++++|+++.+++++..++.             +++|+....+....+ .+...+.
T Consensus       283 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-------------v~v~d~~~~~~~~~~-~~~~~~~  348 (433)
T 3bws_A          283 GRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-------------IEVYDLKEKKVQKSI-PVFDKPN  348 (433)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-------------EEEEETTTTEEEEEE-ECSSSEE
T ss_pred             CeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-------------EEEEECCCCcEEEEe-cCCCCCC
Confidence            89999999999888887666688899999999887776554432             233433333333323 2557799


Q ss_pred             EEEECCCCceEEeecC---------------CCcEEEeecCCC
Q 020461          293 ALAFNPDGKSFSSGGE---------------DGYVRLHHFDPD  320 (326)
Q Consensus       293 ~v~~s~d~~~lat~s~---------------Dg~i~l~~~~~~  320 (326)
                      +++|+|+|++|++++.               ||.|++|+....
T Consensus       349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence            9999999998888776               579999998654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=6.6e-25  Score=183.88  Aligned_cols=234  Identities=17%  Similarity=0.250  Sum_probs=177.6

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      +.+|...|.+++|+|++++|++|+.|++|++|+.++++++..+.+|...+.++++  +++.+++++.++.+++|+.....
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc
Confidence            4578888999999999999999999999999999999999999999999887665  56799999999999999988764


Q ss_pred             EE-EEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE---
Q 020461           86 QL-FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT---  160 (326)
Q Consensus        86 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---  160 (326)
                      .. ..+. +......+.+.+.+..++.+..     +..+.+|++....  ...........+.+.|..+.++|.+..   
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  213 (318)
T 4ggc_A          141 HHVATLSGHSQEVCGLRWAPDGRHLASGGN-----DNLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  213 (318)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEESSCBT--TBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred             eeEEEEcCccCceEEEEEcCCCCEEEEEec-----CcceeEEECCCCc--ccccceeeecccCCceEEEEecCCCCcEEE
Confidence            43 2332 3445555566655544443322     2234444443211  111234455677888999999998753   


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe--CCCeEEEeecCCcceEEEEe-eccceEE
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPVNA  237 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (326)
                      +++++.+++|++||.+........    .+...+..+.+++++..+++++  .|++|++||+++++++..+. +...|.+
T Consensus       214 ~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~  289 (318)
T 4ggc_A          214 TGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS  289 (318)
T ss_dssp             EEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEecCCCCEEEEEecccccccccc----cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            346788999999999877655432    3567789999999999888765  79999999999999999986 5678999


Q ss_pred             EEeCCCCCeeEEecC
Q 020461          238 VTMSPLLDHVVLGGG  252 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~  252 (326)
                      ++|+|++..+++++.
T Consensus       290 l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          290 LTMSPDGATVASAAA  304 (318)
T ss_dssp             EEECTTSSCEEEEET
T ss_pred             EEEcCCCCEEEEEec
Confidence            999999988776543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=4.4e-25  Score=192.10  Aligned_cols=245  Identities=11%  Similarity=0.004  Sum_probs=179.1

Q ss_pred             eeeecCCceeEEEEcc--------------CCCEEEeecCC------CCeEEEecCCCCeeeeccCcccceEEEEEcCCC
Q 020461            5 LMKGHERPLTYLKYNK--------------DGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS   64 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~--------------~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~   64 (326)
                      .+.+|...+..+++++              .+..++.++.+      +.|++||.. +.....+.+|...|.+++|+|++
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg  190 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG  190 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC
Confidence            3667777776666664              25666666654      799999987 45567788899999999999999


Q ss_pred             CeEEEEeCCC---cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE
Q 020461           65 MTLITGSADQ---TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (326)
Q Consensus        65 ~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (326)
                      ++|++++.|+   .|++||+.+++...                                                     
T Consensus       191 ~~la~~s~~~~~~~i~~~d~~tg~~~~-----------------------------------------------------  217 (415)
T 2hqs_A          191 SKLAYVTFESGRSALVIQTLANGAVRQ-----------------------------------------------------  217 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEE-----------------------------------------------------
T ss_pred             CEEEEEEecCCCcEEEEEECCCCcEEE-----------------------------------------------------
Confidence            9999999885   99999998765421                                                     


Q ss_pred             eccCccceeEEEEecCCcEEE-EeeCCCc--EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CC--eE
Q 020461          142 LKGPQGRINRAVWGPLNRTII-SAGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SA  215 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg--~i  215 (326)
                      +..+...+.+++|+|+++.|+ +++.|+.  |.+||+.+++.. .   ...|...+.+++|+|||++|++++. ++  .|
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~---l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i  293 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q---VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV  293 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E---CCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e---CcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence            112334577889999999777 6666655  999999887653 2   2357778999999999999998886 44  67


Q ss_pred             EEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461          216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (326)
Q Consensus       216 ~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  295 (326)
                      ++||+.+++..........+..++|+|+++.++.+...++           ...+++|+...++. ..+..|. .+.+++
T Consensus       294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-----------~~~i~~~d~~~~~~-~~l~~~~-~~~~~~  360 (415)
T 2hqs_A          294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-----------QQHIAKQDLATGGV-QVLSSTF-LDETPS  360 (415)
T ss_dssp             EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-----------CEEEEEEETTTCCE-EECCCSS-SCEEEE
T ss_pred             EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-----------ceEEEEEECCCCCE-EEecCCC-CcCCeE
Confidence            8889988775433234456788999999998877654322           12344555443332 2234443 789999


Q ss_pred             ECCCCceEEeecCCC---cEEEeecCCC
Q 020461          296 FNPDGKSFSSGGEDG---YVRLHHFDPD  320 (326)
Q Consensus       296 ~s~d~~~lat~s~Dg---~i~l~~~~~~  320 (326)
                      |+|||++|++++.|+   .|.+|+++..
T Consensus       361 ~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          361 LAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             EcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            999999999998877   6888877643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=5.1e-24  Score=191.09  Aligned_cols=286  Identities=10%  Similarity=0.068  Sum_probs=199.1

Q ss_pred             EEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc--cCCcEEEEEecCC
Q 020461           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV--ETGAQLFTFNFDS   94 (326)
Q Consensus        17 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~   94 (326)
                      .|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+||+++|++++.|++|++||+  .+++.+..+....
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence            3789999999999999999999999999999984333 889999999999999999999999999  7888777776655


Q ss_pred             Ccceeeeec----CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc----------C-ccceeEEEEecCCc
Q 020461           95 PARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR  159 (326)
Q Consensus        95 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~  159 (326)
                      ....+.+++    +++.++++..    ....+.+++.      ..++.+..+..          | ...+..+.++|+++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~----~~~~v~v~D~------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~  292 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAY----WPPQFAIMDG------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  292 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEE----ESSEEEEEET------TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             CcceEEeCCCcCCCCCEEEEEEc----cCCeEEEEec------cccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence            567788887    6665554431    1122233322      12334443332          2 23788999999776


Q ss_pred             -EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcceEEEEeec---cc
Q 020461          160 -TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTE---RP  234 (326)
Q Consensus       160 -~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~  234 (326)
                       ++++...++.|.+||..+.+.+....  ..+...+..+.|+|+|++|++++ .+++|.+||.++++++..+...   .+
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~  370 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDNLTVTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP  370 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSSCEEEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred             EEEEEECCCCeEEEEEecCCCcceeEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence             55678889999999998765543111  12445678899999999877655 5899999999999998887632   11


Q ss_pred             eEEEE-eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec------
Q 020461          235 VNAVT-MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG------  307 (326)
Q Consensus       235 ~~~~~-~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s------  307 (326)
                      ..... ++|++..+++++..+...+..+|.......     ....+.++.+.+|.+.+..|+|+|||++|++++      
T Consensus       371 g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~-----~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          371 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP-----QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT-----TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred             CCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc-----hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence            11222 467755666554322122333332210000     000344556777888889999999999999987      


Q ss_pred             -CCCcEEEeecCCC
Q 020461          308 -EDGYVRLHHFDPD  320 (326)
Q Consensus       308 -~Dg~i~l~~~~~~  320 (326)
                       .+++|+||+....
T Consensus       446 ~~~~~v~v~d~~~~  459 (543)
T 1nir_A          446 RISQSVAVFDLKNL  459 (543)
T ss_dssp             HHHTCEEEEETTCT
T ss_pred             ccCceEEEEECCCC
Confidence             3789999998753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.5e-23  Score=182.37  Aligned_cols=228  Identities=12%  Similarity=0.071  Sum_probs=172.8

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCC---CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCc--E
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A   76 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~---~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~--i   76 (326)
                      +..+.+|...+.+++|||||++|++++.++   .|++||+.+++.. .+..|.+.+.+++|+||++.|+ +++.|+.  |
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            467788999999999999999999999885   9999999998875 5667888999999999999877 7776665  8


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      .+||+.+++..                                                     .+..|...+..+.|+|
T Consensus       250 ~~~d~~~~~~~-----------------------------------------------------~l~~~~~~~~~~~~sp  276 (415)
T 2hqs_A          250 YVMDLASGQIR-----------------------------------------------------QVTDGRSNNTEPTWFP  276 (415)
T ss_dssp             EEEETTTCCEE-----------------------------------------------------ECCCCSSCEEEEEECT
T ss_pred             EEEECCCCCEE-----------------------------------------------------eCcCCCCcccceEECC
Confidence            88898765431                                                     1123445677889999


Q ss_pred             CCcEEEEeeC-CC--cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC---CeEEEeecCCcceEEEEe
Q 020461          157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV  230 (326)
Q Consensus       157 ~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~  230 (326)
                      +++.|++++. ++  .|.+||+.+++... +   ..|...+.+++|+|+|++|++++.+   ..|++||+.+++.. .+.
T Consensus       277 dg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l---~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~  351 (415)
T 2hqs_A          277 DSQNLAFTSDQAGRPQVYKVNINGGAPQR-I---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS  351 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTSSCCEE-C---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred             CCCEEEEEECCCCCcEEEEEECCCCCEEE-E---ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence            9998888776 45  57777988775432 2   2355678899999999999988875   58999999988764 343


Q ss_pred             eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK  301 (326)
Q Consensus       231 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~  301 (326)
                      ....+..++|+|+++.++.++..++           ...++.|+.. +.....+.+|.+.|.+++|+|...
T Consensus       352 ~~~~~~~~~~spdg~~l~~~s~~~~-----------~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          352 STFLDETPSLAPNGTMVIYSSSQGM-----------GSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETT-----------EEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             CCCCcCCeEEcCCCCEEEEEEcCCC-----------ccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            3347889999999998877654332           1234455543 233445678999999999999653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=5.6e-23  Score=184.33  Aligned_cols=293  Identities=11%  Similarity=0.094  Sum_probs=197.7

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEec--CCCCeeeeccCcccceEEEEEcC----CCCeEEEEe-CCCcEEEEEccCCc
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSR----DSMTLITGS-ADQTAKLWNVETGA   85 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~--~~~~~~~~~~~h~~~V~~~~~~~----~~~~l~s~~-~d~~i~~wd~~~~~   85 (326)
                      +..++|+|||++|++++.|++|++||+  .+++.+.++.. ...+..++|+|    |++++++++ .+++|.+||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            789999999999999999999999999  88888888874 44578999999    999999988 48999999999998


Q ss_pred             EEEEEecC------------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           86 QLFTFNFD------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        86 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      .+..+...            ..+..+.++++....+++...    ...+.+++....    ....+..+ .+...+..+.
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~~----~~l~~~~i-~~~~~~~~~~  330 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVNYKDI----DNLTVTSI-GAAPFLHDGG  330 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEECTTS----SSCEEEEE-ECCSSCCCEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC----CCeEEEEEecCC----CcceeEEe-ccCcCccCce
Confidence            88776532            123344555543333322211    112222222111    01111222 2445677899


Q ss_pred             EecCCcEEEEe-eCCCcEEEEECCCCcccccccc-ccCcceeeEEEEEcCC-CCeEEEEe-CCCeEEEeecCC-------
Q 020461          154 WGPLNRTIISA-GEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAAD-GSHFLTGS-LDKSAKLWDART-------  222 (326)
Q Consensus       154 ~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~-~~~l~s~s-~dg~i~iwd~~~-------  222 (326)
                      |+|++++++++ ..+++|.+||..++++...+.. ...|......+ ++|+ +..++++. .|++|.+||+.+       
T Consensus       331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~  409 (543)
T 1nir_A          331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  409 (543)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence            99999977655 5689999999999987765532 12354433333 4676 66677775 589999999998       


Q ss_pred             cceEEEEeec-cceEEEEeCCCCCeeEEec--CCC---cceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE
Q 020461          223 LELIKTYVTE-RPVNAVTMSPLLDHVVLGG--GQD---ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (326)
Q Consensus       223 ~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~--~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  296 (326)
                      .++++++... .....+.++|+++.++++.  +.+   ...+..+|........+...   .....++..+...+..++|
T Consensus       410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~  486 (543)
T 1nir_A          410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP---IAEWADLGEGAKRVVQPEY  486 (543)
T ss_dssp             TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC---HHHHHCCCSSCCEEEEEEE
T ss_pred             CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee---chhhcccCCCCCceEeccC
Confidence            8899988754 4567899999999998865  222   22444555443321101100   0001123456778999999


Q ss_pred             CCCCceEEee-----cCCCcEEEeecCC
Q 020461          297 NPDGKSFSSG-----GEDGYVRLHHFDP  319 (326)
Q Consensus       297 s~d~~~lat~-----s~Dg~i~l~~~~~  319 (326)
                      +|||+.+..+     +.|+.|.||+...
T Consensus       487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          487 NKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             CSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence            9999998765     3489999987654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=6.7e-23  Score=172.89  Aligned_cols=292  Identities=11%  Similarity=0.059  Sum_probs=188.3

Q ss_pred             EEEccCCCE-EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEEEEccCCcE-EEEEec
Q 020461           16 LKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQ-LFTFNF   92 (326)
Q Consensus        16 ~~~s~~~~~-l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-~~~~~~   92 (326)
                      +.|++++++ +++++.++.|++||..+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            456676665 7788899999999999999988887766677 9999999997766665 89999999999886 555554


Q ss_pred             CCCcce-eeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCc-
Q 020461           93 DSPARS-VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAI-  169 (326)
Q Consensus        93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~-  169 (326)
                      ...... +.++++...+++......  ...+.+++..      .++.+..+..+ .....++|+|++++++ +...++. 
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~--~~~i~v~d~~------~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~  152 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNH--PFNMQSYSFL------KNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANT  152 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSS--SCEEEEEETT------TTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTE
T ss_pred             CCCCccceEECCCCCEEEEecCCCC--cccEEEEECC------CCCeEEEEECC-CCccceEECCCCCEEEEEecCCCce
Confidence            444444 788887766554332200  0023333321      23334444433 3468999999998554 5566688 


Q ss_pred             EEEEECCCCcccccc-ccccCcceeeEEEEEcCCCCeEEE-EeCCCeEEEeecCCcce---EEEEeeccceEEEEeCCCC
Q 020461          170 VRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLEL---IKTYVTERPVNAVTMSPLL  244 (326)
Q Consensus       170 i~~wd~~~~~~~~~~-~~~~~h~~~v~~v~~s~~~~~l~s-~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~s~~~  244 (326)
                      |.+|++.....+... ............++++|+|++++. +..++.|++||+++++.   +..+.....+..++++|++
T Consensus       153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg  232 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDG  232 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTS
T ss_pred             EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCC
Confidence            999998754332111 111122345789999999996655 45689999999999988   7777777778899999999


Q ss_pred             CeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe-ecCCCcEEEeecCCCc
Q 020461          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS-GGEDGYVRLHHFDPDY  321 (326)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat-~s~Dg~i~l~~~~~~~  321 (326)
                      +.++++...+. .+..+|...+.....  .... ..+............++|+|||++|++ +..++.|++|++....
T Consensus       233 ~~l~v~~~~~~-~i~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          233 STVYVLTESTV-DVFNFNQLSGTLSFV--KSFG-HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             SEEEEECSSEE-EEEEEETTTTEEEEE--EEEE-CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CEEEEEEcCCC-EEEEEECCCCceeee--cccc-cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            98877654332 244455544332110  0000 000000011112356999999998754 4556799999987643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=4.8e-24  Score=199.04  Aligned_cols=281  Identities=10%  Similarity=-0.012  Sum_probs=194.2

Q ss_pred             CCceeEEEEccCCCEEEeecC-CC-----CeEEEecCCCCeeeeccCccc------------------------ceEEEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAK-DH-----TPTVWFADNGERLGTYRGHNG------------------------AVWCCD   59 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~-d~-----~v~iw~~~~~~~~~~~~~h~~------------------------~V~~~~   59 (326)
                      ...+.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            346889999999999999998 88     899999999987766655432                        388999


Q ss_pred             EcCCCCeEEEEeCCCcEEEEEccCC---cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCC
Q 020461           60 VSRDSMTLITGSADQTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (326)
Q Consensus        60 ~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (326)
                      |+|||++|++++. +.|.+||+.++   +..........+..+.|+++++.++...+.      .+.++.+.      ++
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~d~~------~g  182 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVIDLA------SG  182 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEEETT------TT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEEecC------CC
Confidence            9999999998887 89999999987   543322334556778899887755554432      23333221      12


Q ss_pred             ceEEEeccCcc----------------ceeEEEEecCCcEEEEeeCCC--------------------------------
Q 020461          137 ESVLILKGPQG----------------RINRAVWGPLNRTIISAGEDA--------------------------------  168 (326)
Q Consensus       137 ~~~~~~~~~~~----------------~i~~~~~~~~~~~l~s~~~d~--------------------------------  168 (326)
                      ........+..                .+..+.|+|+++.|++++.|+                                
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            22222222222                247799999999999887765                                


Q ss_pred             -cEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeC-----CCeEEEeecCCcceEEEEeecc-----ceE
Q 020461          169 -IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKTYVTER-----PVN  236 (326)
Q Consensus       169 -~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~-----~~~  236 (326)
                       .|.+||+.+ ++.... .....|...+..++| |||++|+.++.     +..|++||+.++++...+....     .+.
T Consensus       263 ~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWI-DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEECSSTTCCCEEE-CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCCceEEe-cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence             788999988 765332 211257788999999 99999997764     5789999999988766654332     346


Q ss_pred             EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEE-EECCCCceEE-eecCCC--cE
Q 020461          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL-AFNPDGKSFS-SGGEDG--YV  312 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~s~d~~~la-t~s~Dg--~i  312 (326)
                      .++|+|+++.++++ ..++.           ..++.++....  ...+..|...|..+ .|+|||+.|+ +++.|+  .+
T Consensus       341 ~~~~spdg~~~~~~-~~~g~-----------~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~  406 (741)
T 2ecf_A          341 SLRFLDDGSILWSS-ERTGF-----------QHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES  406 (741)
T ss_dssp             CCEECTTSCEEEEE-CTTSS-----------CEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred             ceEECCCCeEEEEe-cCCCc-----------cEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence            88999999854444 33321           12222332111  33455677778887 5999998764 555566  89


Q ss_pred             EEeecCC
Q 020461          313 RLHHFDP  319 (326)
Q Consensus       313 ~l~~~~~  319 (326)
                      +||.++.
T Consensus       407 ~l~~~~~  413 (741)
T 2ecf_A          407 QIYAVPL  413 (741)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEc
Confidence            9999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.4e-23  Score=176.17  Aligned_cols=253  Identities=11%  Similarity=0.113  Sum_probs=167.1

Q ss_pred             eecCCceeEEEEccCCCEEEeecCC-CCeEEEecC--CCCe--eeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEEEE
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAKD-HTPTVWFAD--NGER--LGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWN   80 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~d-~~v~iw~~~--~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd   80 (326)
                      ..|...+.+++|+|++++|++++.+ +.|++|++.  +++.  +..+..+. .+..++|+|+++++++++. ++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            4577788999999999988888876 999999987  5553  34454444 7889999999998877665 88899999


Q ss_pred             ccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      +..+......                                                 ..+. ....+..++|+|+++.
T Consensus       113 ~~~~~~~~~~-------------------------------------------------~~~~-~~~~~~~~~~s~dg~~  142 (343)
T 1ri6_A          113 LEDGLPVGVV-------------------------------------------------DVVE-GLDGCHSANISPDNRT  142 (343)
T ss_dssp             EETTEEEEEE-------------------------------------------------EEEC-CCTTBCCCEECTTSSE
T ss_pred             CCCCcccccc-------------------------------------------------cccc-CCCCceEEEECCCCCE
Confidence            8532211000                                                 0001 1123667889999998


Q ss_pred             EEEee-CCCcEEEEECCC-Ccccccc--ccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCC--cce--EEEEee
Q 020461          161 IISAG-EDAIVRIWDTET-GKLLKES--DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART--LEL--IKTYVT  231 (326)
Q Consensus       161 l~s~~-~d~~i~~wd~~~-~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~--~~~--~~~~~~  231 (326)
                      +++++ .++.|.+||+.+ ++.....  .........+..++++|++.++++++ .++.|++||+..  ++.  ......
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~  222 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM  222 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence            87776 899999999987 5432211  11112334678899999999776554 789999999953  433  222221


Q ss_pred             -------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEE
Q 020461          232 -------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS  304 (326)
Q Consensus       232 -------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la  304 (326)
                             ...+..++++|+++.++++...+. .+..+|.....        ...+.+..+..+.. +..++|+|||++|+
T Consensus       223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~-~i~v~d~~~~~--------~~~~~~~~~~~~~~-~~~~~~s~dg~~l~  292 (343)
T 1ri6_A          223 MPENFSDTRWAADIHITPDGRHLYACDRTAS-LITVFSVSEDG--------SVLSKEGFQPTETQ-PRGFNVDHSGKYLI  292 (343)
T ss_dssp             SCTTCCSCCCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTS--------CCEEEEEEEECSSS-CCCEEECTTSSEEE
T ss_pred             cCccccccCCccceEECCCCCEEEEEecCCC-EEEEEEEcCCC--------CceEEeeeecCCCc-cceEEECCCCCEEE
Confidence                   123557999999988876654332 22233322100        01122222233333 88999999999887


Q ss_pred             eec-CCCcEEEeecCCC
Q 020461          305 SGG-EDGYVRLHHFDPD  320 (326)
Q Consensus       305 t~s-~Dg~i~l~~~~~~  320 (326)
                      +++ .|+.|++|+++++
T Consensus       293 ~~~~~~~~v~v~~~d~~  309 (343)
T 1ri6_A          293 AAGQKSHHISVYEIVGE  309 (343)
T ss_dssp             EECTTTCEEEEEEEETT
T ss_pred             EecCCCCeEEEEEEcCC
Confidence            777 6899999988764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=8.4e-24  Score=196.82  Aligned_cols=289  Identities=11%  Similarity=0.018  Sum_probs=191.0

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc---ceEEEEEcCCCCeEEEEeCC---------CcEEEE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSAD---------QTAKLW   79 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~~~d---------~~i~~w   79 (326)
                      .+.+++|+|||+++++ +.|++|++||..+++....+.+|..   .|.+++|||||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3678899999997766 7899999999999988877877765   49999999999999999875         678899


Q ss_pred             EccCCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc---------
Q 020461           80 NVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG---------  147 (326)
Q Consensus        80 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  147 (326)
                      |+.+++........   ..+..+.|+++++.++.....      .+.++...      +++.......+..         
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~------~g~~~~~~~~~~~~~~~~g~~~  164 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN------NIYYCAHV------GKQAIRVVSTGKEGVIYNGLSD  164 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT------EEEEESSS------SSCCEEEECCCBTTTEEEEECC
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEECC------eEEEEECC------CCceEEEecCCCCCceECcccc
Confidence            99988763221111   125567888877554444331      22222221      2233333333332         


Q ss_pred             ---------ceeEEEEecCCcEEEEeeCCC----------------------------------cEEEEECCCCcccccc
Q 020461          148 ---------RINRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLLKES  184 (326)
Q Consensus       148 ---------~i~~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~  184 (326)
                               .+..+.|+|+++.|++++.|+                                  .|++||+.+++....+
T Consensus       165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence                     237899999999999887653                                  7999999887653333


Q ss_pred             cc---ccCcceeeEEEEEcCCCCeEEEEeC----CCeEEEeecCCcceEEEEee--ccce----EEEEeCCCCCeeEEe-
Q 020461          185 DK---ETGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLELIKTYVT--ERPV----NAVTMSPLLDHVVLG-  250 (326)
Q Consensus       185 ~~---~~~h~~~v~~v~~s~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~--~~~~----~~~~~s~~~~~~~~~-  250 (326)
                      ..   ...+...+..++|+|||+++++.+.    +..|++||+.++++...+..  ...+    ..++|+|+++.++.. 
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  324 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR  324 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence            21   1123678899999999998877654    35799999999887665432  2222    378999999987765 


Q ss_pred             cCCCcceeEeecccCceeeeEeec-cccee--eeccccccCcceeE-EEECCCCceEEeecCC---CcEEEeecCCC
Q 020461          251 GGQDASAVTTTDHRAGKFEAKFFD-KILQE--EIGGVKGHFGPINA-LAFNPDGKSFSSGGED---GYVRLHHFDPD  320 (326)
Q Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~--~~~~~~~h~~~v~~-v~~s~d~~~lat~s~D---g~i~l~~~~~~  320 (326)
                      ...++.       ......++.|+ ...+.  ....+..+...+.. ++|||||+.|+..+.+   +.++||.++.+
T Consensus       325 ~~~~~~-------~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          325 AIPQGG-------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EECCSS-------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             ecccCC-------CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            322220       00112344454 12221  02233333334444 7999999998766554   89999998753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=1.4e-22  Score=172.12  Aligned_cols=263  Identities=15%  Similarity=0.101  Sum_probs=169.5

Q ss_pred             eeecCCceeEEEEccCCCEEEeecC---CCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEE
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW   79 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~---d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~w   79 (326)
                      ...+...+..++|+|||+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++++|++++ .+++|++|
T Consensus        35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            344566778899999999 555443   6899999997765  3445556777888999999999888888 78999999


Q ss_pred             EccC-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           80 NVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        80 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      ++.. +.........                                   ..   ..+..   .+.....+..++|+|++
T Consensus       114 ~~~~~g~~~~~~~~~-----------------------------------~~---~~~p~---~~~~~~~~~~~~~spdg  152 (347)
T 3hfq_A          114 KIAADGALTLTDTVQ-----------------------------------HS---GHGPR---PEQDGSHIHYTDLTPDN  152 (347)
T ss_dssp             EECTTSCEEEEEEEE-----------------------------------CC---CCCSS---TTCSSCCEEEEEECTTS
T ss_pred             EeCCCCCeeecceee-----------------------------------cC---CCCCC---ccccCCCceEEEECCCC
Confidence            9853 2221110000                                   00   00000   01223457789999999


Q ss_pred             cEEEEeeCCCcEEEEECC-CCccccccccccCcceeeEEEEEcCCCCeEEE-EeCCCeEEEeecCC--cce--EEEEee-
Q 020461          159 RTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDART--LEL--IKTYVT-  231 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s-~s~dg~i~iwd~~~--~~~--~~~~~~-  231 (326)
                      +.+++...++.|.+||+. +++..............+..++|+|||+++++ +..++.|++|++..  ++.  +..+.. 
T Consensus       153 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  232 (347)
T 3hfq_A          153 RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI  232 (347)
T ss_dssp             CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred             cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence            966777778999999998 45432211111112235678999999996665 56688999999874  443  222221 


Q ss_pred             c------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461          232 E------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS  305 (326)
Q Consensus       232 ~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat  305 (326)
                      .      ..+..++++|+++.++++...+. .+..++....         .....+..+..+...+..++|+|||++|++
T Consensus       233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~~-~v~v~~~~~~---------g~~~~~~~~~~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          233 PADYTAHNGAAAIRLSHDGHFLYVSNRGYN-TLAVFAVTAD---------GHLTLIQQISTEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             CTTCCSCCEEEEEEECTTSCEEEEEEETTT-EEEEEEECGG---------GCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred             CCCCCCCCcceeEEECCCCCEEEEEeCCCC-EEEEEEECCC---------CcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence            1      24778999999998866543222 1222221100         011223333445556889999999998877


Q ss_pred             ecC-CCcEEEeecCCC
Q 020461          306 GGE-DGYVRLHHFDPD  320 (326)
Q Consensus       306 ~s~-Dg~i~l~~~~~~  320 (326)
                      ++. ++.|++|.++++
T Consensus       303 ~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          303 VNQNTDNATLYARDLT  318 (347)
T ss_dssp             EETTTTEEEEEEECTT
T ss_pred             EEcCCCcEEEEEEeCC
Confidence            765 599999988765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=1.1e-21  Score=166.81  Aligned_cols=275  Identities=12%  Similarity=0.102  Sum_probs=191.6

Q ss_pred             cCCceeEEEEccCCCEEEeecC-------CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCcEEEEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWN   80 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~-------d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~i~~wd   80 (326)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3456789999999998887774       56899999999998877764 33477899999998654 455679999999


Q ss_pred             ccCCcEEEEEecCCC----------cceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCccce
Q 020461           81 VETGAQLFTFNFDSP----------ARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (326)
Q Consensus        81 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (326)
                      +.+++.+..+.....          ...+.++++...+++.. ..    ...+..++.      ..++....+..+...+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~------~~~~~~~~~~~~~~~~  187 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDG------GNIKLKTAIQNTGKMS  187 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEET------TTTEEEEEECCCCTTC
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcC------CCCceEEEecCCCCcc
Confidence            999988777665321          34567777655443332 11    112222222      1234445555455567


Q ss_pred             eEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc-ccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcceEE
Q 020461          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIK  227 (326)
Q Consensus       150 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~  227 (326)
                      ..+.|+|+++.+++++.++.|.+||+.+++....+.. ..++...+..++++|++.+++.++. ++.|.+||.++++.+.
T Consensus       188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            8899999999999999999999999998877655432 2235566888999999998777665 5999999999999888


Q ss_pred             EEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461          228 TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG  307 (326)
Q Consensus       228 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s  307 (326)
                      .+.... ...++++|+++.++++...+. .+..+|...            .+.+..+.. ...+..++|+|||++|+.+.
T Consensus       268 ~~~~~~-~~~~~~s~dg~~l~v~~~~~~-~v~~~d~~~------------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          268 KVAAPE-SLAVLFNPARNEAYVTHRQAG-KVSVIDAKS------------YKVVKTFDT-PTHPNSLALSADGKTLYVSV  332 (353)
T ss_dssp             EEECSS-CCCEEEETTTTEEEEEETTTT-EEEEEETTT------------TEEEEEEEC-CSEEEEEEECTTSCEEEEEE
T ss_pred             EEEcCC-CceEEECCCCCEEEEEECCCC-eEEEEECCC------------CeEEEEEec-CCCCCeEEEcCCCCEEEEEE
Confidence            876544 367899999998777654333 233334332            222222222 23678999999999766665


Q ss_pred             CC
Q 020461          308 ED  309 (326)
Q Consensus       308 ~D  309 (326)
                      .+
T Consensus       333 ~~  334 (353)
T 3vgz_A          333 KQ  334 (353)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=9.9e-23  Score=168.45  Aligned_cols=245  Identities=13%  Similarity=0.091  Sum_probs=172.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-CCeeeeccCcc-cceEEEEEcCCCCeEEEEe--CCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHN-GAVWCCDVSRDSMTLITGS--ADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~--~d~~i~~w   79 (326)
                      ..+..|...+.+++|+|+|++|++++ ++.|++|++.+ ++.......|. ..|.+++|+|++++|++++  .++..++|
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~  113 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY  113 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence            45677889999999999999999886 78999999999 88777776664 6789999999999999998  44667777


Q ss_pred             EccC--CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           80 NVET--GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        80 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      .++.  ++..                                                     .+..+ ..+..+.|+|+
T Consensus       114 ~~~~~~~~~~-----------------------------------------------------~~~~~-~~~~~~~~spd  139 (297)
T 2ojh_A          114 LLPSTGGTPR-----------------------------------------------------LMTKN-LPSYWHGWSPD  139 (297)
T ss_dssp             EEETTCCCCE-----------------------------------------------------ECCSS-SSEEEEEECTT
T ss_pred             EEECCCCceE-----------------------------------------------------EeecC-CCccceEECCC
Confidence            6532  1110                                                     00111 13667789999


Q ss_pred             CcEEE-EeeCCCcEEEEECC--CCccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecC-CcceEEEEe-e
Q 020461          158 NRTII-SAGEDAIVRIWDTE--TGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR-TLELIKTYV-T  231 (326)
Q Consensus       158 ~~~l~-s~~~d~~i~~wd~~--~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~-~  231 (326)
                      ++.|+ +++.++.+++|++.  +++. ..   ...|...+.+++|+|++.+|+.++ .++.+++|++. .+..+..+. .
T Consensus       140 g~~l~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~  215 (297)
T 2ojh_A          140 GKSFTYCGIRDQVFDIYSMDIDSGVE-TR---LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS  215 (297)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCE-EE---CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC
T ss_pred             CCEEEEEECCCCceEEEEEECCCCcc-eE---cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC
Confidence            99777 78889999999863  3332 22   234667889999999999888766 58999999886 444445443 3


Q ss_pred             ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee--eeccccccCcceeEEEECCCCceEEeecCC
Q 020461          232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE--EIGGVKGHFGPINALAFNPDGKSFSSGGED  309 (326)
Q Consensus       232 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~s~d~~~lat~s~D  309 (326)
                      ...+..++|+|+++.+++++..+....   ........+++|+...++  .+..+.+|...+..++|+||+++|++++.|
T Consensus       216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          216 AYGDWFPHPSPSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             CcccCCeEECCCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            446778999999998877654321100   000011234555543322  233344678889999999999999888776


Q ss_pred             C
Q 020461          310 G  310 (326)
Q Consensus       310 g  310 (326)
                      .
T Consensus       293 ~  293 (297)
T 2ojh_A          293 P  293 (297)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=8.7e-23  Score=178.34  Aligned_cols=195  Identities=12%  Similarity=0.089  Sum_probs=142.9

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC----------eeeec-----cCcccceEEEEEcCCCCeEE----EE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----------RLGTY-----RGHNGAVWCCDVSRDSMTLI----TG   70 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~----------~~~~~-----~~h~~~V~~~~~~~~~~~l~----s~   70 (326)
                      ...+..+++++++.++++++.|+ +++|+..+..          .+..+     ..|.+.|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578999999999999999988 8888653210          11111     13456799999999999999    88


Q ss_pred             eCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcccee
Q 020461           71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (326)
                      +.|++|++||+.++..     .....                                    .........+.+|...|.
T Consensus       115 s~d~~v~iwd~~~~~~-----~~~~~------------------------------------~~~~~~~~~~~~h~~~V~  153 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSN-----EAKQQ------------------------------------KRPFAYHKLLKDAGGMVI  153 (434)
T ss_dssp             TTEEEEEEEEHHHHHC-----TTCSS------------------------------------CCCSEEEECCCSGGGSEE
T ss_pred             CCCceEEEEEcccccc-----CCcCC------------------------------------cceeeeeeccCCCCCceE
Confidence            8999999999875410     00000                                    000011233467889999


Q ss_pred             EEEEecC-CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          151 RAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       151 ~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      +++|+|+ +.+|++++.||+|++||++++.....   ..+|...+++++|+|+|.+|++|+.||+|++||++ ++....+
T Consensus       154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~---~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          154 DMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA---TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE---EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred             EEEECCCCCCEEEEEECCCeEEEEEcCCCcceee---ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence            9999998 78999999999999999998754332   24688899999999999999999999999999998 5555544


Q ss_pred             eec--------cceEEEEeCCCCCeeEEe
Q 020461          230 VTE--------RPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       230 ~~~--------~~~~~~~~s~~~~~~~~~  250 (326)
                      ...        ..+.+++|++....+++.
T Consensus       230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          230 PCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             CCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             cCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            311        267788888876555443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=9.3e-21  Score=175.90  Aligned_cols=289  Identities=11%  Similarity=0.046  Sum_probs=187.8

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-----Cc
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GA   85 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~   85 (326)
                      ..+.+++|||| +.++.+ .++.+++||+.+++... +..+.+.+..++|+|||++|+.+ .|+.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56899999999 655544 35999999998886543 44567778999999999998884 789999999998     76


Q ss_pred             EEEEEecCCC---------------cceeeeecCCeEEEEEc-Ccc----c-----------------------eeceee
Q 020461           86 QLFTFNFDSP---------------ARSVDFAVGDKLAVITT-DPF----M-----------------------ELNSAI  122 (326)
Q Consensus        86 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~----~-----------------------~~~~~~  122 (326)
                      ..........               ...+.|+++++.++... +..    .                       .....+
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            6543322222               35678888776555443 100    0                       001112


Q ss_pred             eeeeeccCCCCCCCceEEEe--ccCccceeEEEEecCCcEEEEeeCCC-----cEEEEECCCCccccccccc--cCccee
Q 020461          123 HVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKE--TGHKKT  193 (326)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~--~~h~~~  193 (326)
                      .++++.      ++......  ..+...+..+.|+|+++.|++++.++     .|.+||+.+++....+...  ......
T Consensus       238 ~~~d~~------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          238 GIYHLA------TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEETT------TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             EEEECC------CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            222221      12222211  24567789999999999999887776     8999999988433322211  011122


Q ss_pred             eEEEEEcC--CCCeEEEEeCCCeEEEeecC-CcceEEEEee-ccceEE-EEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461          194 ITSLAKAA--DGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNA-VTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (326)
Q Consensus       194 v~~v~~s~--~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~  268 (326)
                      +.++.|+|  ||.++++++.|+.+++|++. ++..+..+.. ...+.. ++|+|+++.+++++..+..         ...
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~---------~~~  382 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP---------LER  382 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT---------TCB
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC---------ceE
Confidence            46789999  99999999999999999876 5566665543 234554 7999999988776654430         001


Q ss_pred             eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC----CcEEEeecCCC
Q 020461          269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED----GYVRLHHFDPD  320 (326)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D----g~i~l~~~~~~  320 (326)
                      .++.++...+. ...+ .|...+.+++|||||++++..+.+    +.|.+|+.+..
T Consensus       383 ~l~~~d~~~~~-~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          383 HFYCIDIKGGK-TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             EEEEEETTCCC-CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             EEEEEEcCCCC-ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            22223322221 1112 255678999999999988776443    56999987654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=1.8e-21  Score=176.85  Aligned_cols=270  Identities=13%  Similarity=0.087  Sum_probs=176.1

Q ss_pred             CCceeEEEEccCCCEEEeecC-CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccC--
Q 020461           10 ERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVET--   83 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~--   83 (326)
                      ..+|.+++|+|||++||+++. |++++||++.+++.......+...|..++|+|| +.+++++.   +...++|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            457999999999999999887 999999998666654433333368999999999 78887775   56667776543  


Q ss_pred             -CcEEEEEecCCCcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           84 -GAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                       +... .+..........++++.. +++++...     ....++.+.      +++.......+ .  .+++|+|+|+.|
T Consensus       100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~-----~~~~l~d~~------~g~~~~l~~~~-~--~~~~~spDG~~l  164 (582)
T 3o4h_A          100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATE-----DRVALYALD------GGGLRELARLP-G--FGFVSDIRGDLI  164 (582)
T ss_dssp             TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECS-----SCEEEEEEE------TTEEEEEEEES-S--CEEEEEEETTEE
T ss_pred             CCccc-cccCCCCceeeeeCCCCCeEEEEecCC-----CCceEEEcc------CCcEEEeecCC-C--ceEEECCCCCEE
Confidence             2222 222222333445665442 33322211     011123221      22222222222 2  788999999999


Q ss_pred             EEeeCC----CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC--eEEEeecCCcceEEEEe-eccc
Q 020461          162 ISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLELIKTYV-TERP  234 (326)
Q Consensus       162 ~s~~~d----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-~~~~  234 (326)
                      ++++.+    +.|++||+.+++.. .+   ..|...+..++|||||+.|+++..++  .|++||+.+++.. .+. +...
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~~~-~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~  239 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGGLR-VF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD  239 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCCE-EE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred             EEEEEcCCCCeEEEEEcCCCCCce-Ee---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence            988877    78999999887654 22   35777889999999999999888898  8999999998876 332 2233


Q ss_pred             eEEEE--------eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee
Q 020461          235 VNAVT--------MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG  306 (326)
Q Consensus       235 ~~~~~--------~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~  306 (326)
                      +..++        |+|++ .+++++..++.             .++|..  ++...   .+.+.|.+++|+ |+++++++
T Consensus       240 ~~~~~~~~~~~~~~spdg-~~~~~~~~~g~-------------~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~  299 (582)
T 3o4h_A          240 FSSYRPTAITWLGYLPDG-RLAVVARREGR-------------SAVFID--GERVE---APQGNHGRVVLW-RGKLVTSH  299 (582)
T ss_dssp             HHHHCCSEEEEEEECTTS-CEEEEEEETTE-------------EEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEE
T ss_pred             hhhhhhccccceeEcCCC-cEEEEEEcCCc-------------EEEEEE--CCeec---cCCCceEEEEec-CCEEEEEE
Confidence            44455        99999 55554443321             233333  22222   234678999999 99999888


Q ss_pred             cCCCc-EEEeecCCC
Q 020461          307 GEDGY-VRLHHFDPD  320 (326)
Q Consensus       307 s~Dg~-i~l~~~~~~  320 (326)
                      +.+.+ -++|.++.+
T Consensus       300 s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          300 TSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EETTEEEEEEEETTC
T ss_pred             cCCCCCCeEEEEcCC
Confidence            87754 445555543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=5.3e-21  Score=184.67  Aligned_cols=296  Identities=11%  Similarity=-0.003  Sum_probs=192.3

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCC------CCeEEEecCCCCeeeeccCcccce-------EEEEEcCCCCeEEE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAV-------WCCDVSRDSMTLIT   69 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~h~~~V-------~~~~~~~~~~~l~s   69 (326)
                      +..+.+|...+.+++|||||++||.++.+      ..|++|++.+++ ...+..|...+       ..++|+|||+++++
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~  123 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  123 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence            46678899999999999999999987643      479999998776 56788888888       99999999997788


Q ss_pred             EeCC------CcEEEEEccCCcEEEEEec--------------------------------------------------C
Q 020461           70 GSAD------QTAKLWNVETGAQLFTFNF--------------------------------------------------D   93 (326)
Q Consensus        70 ~~~d------~~i~~wd~~~~~~~~~~~~--------------------------------------------------~   93 (326)
                      ++.+      ..|.+||+.+++.......                                                  .
T Consensus       124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~  203 (1045)
T 1k32_A          124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS  203 (1045)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred             ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence            7755      3467777766654321110                                                  0


Q ss_pred             CCcceeeeecCCeEEEEEcC-ccceecee----eeeeeeccCCC--------CC----------------CCceEEEecc
Q 020461           94 SPARSVDFAVGDKLAVITTD-PFMELNSA----IHVKRIARDPA--------DQ----------------GGESVLILKG  144 (326)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~--------~~----------------~~~~~~~~~~  144 (326)
                      ..+....|+++ .+++.+.. ....+...    .....+.....        +.                ....+..+.+
T Consensus       204 ~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~  282 (1045)
T 1k32_A          204 THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEI  282 (1045)
T ss_dssp             SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCC
T ss_pred             CcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeecc
Confidence            01111112222 22222211 10000000    00000000000        00                0011112222


Q ss_pred             -----------CccceeEEEEe-cCCcEEEEeeCCCcEEEEECCCCccccccccccCcce-eeEEEEEcCCCCeEEEEeC
Q 020461          145 -----------PQGRINRAVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHFLTGSL  211 (326)
Q Consensus       145 -----------~~~~i~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~-~v~~v~~s~~~~~l~s~s~  211 (326)
                                 |...+..+.|+ |+++.+++++ ++.|.+|+..+++... +   ..|.. .+..++|+ ||..|++++.
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~s-dg~~l~~~s~  356 (1045)
T 1k32_A          283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V---PEPLRIRYVRRGGD-TKVAFIHGTR  356 (1045)
T ss_dssp             CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C---SCCSCEEEEEECSS-SEEEEEEEET
T ss_pred             CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-c---cCCCcceEEeeeEc-CCCeEEEEEC
Confidence                       23368889999 9999888877 7889999988765432 2   24555 88999999 9999999999


Q ss_pred             CCeEE-EeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461          212 DKSAK-LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP  290 (326)
Q Consensus       212 dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~  290 (326)
                      ++.+. +||+.+++...-..+...+..++|+|+++.++.+....              .+++|+...++......+|.+.
T Consensus       357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~--------------~v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF--------------EIMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS--------------EEEEEETTTCCEEEEEECSSSC
T ss_pred             CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCC--------------eEEEEECCCCceEEeccCCCCC
Confidence            88898 99998776543333345688999999999887664322              2445555444444444578889


Q ss_pred             eeEEEECCCCceEEeecCCC----------cEEEeecCCC
Q 020461          291 INALAFNPDGKSFSSGGEDG----------YVRLHHFDPD  320 (326)
Q Consensus       291 v~~v~~s~d~~~lat~s~Dg----------~i~l~~~~~~  320 (326)
                      +..++|||||++||+++.++          .|++|+++..
T Consensus       423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence            99999999999999888754          9999988753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=1.2e-20  Score=182.18  Aligned_cols=286  Identities=13%  Similarity=0.076  Sum_probs=202.2

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCC-CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .+.+|...+.++.|+++ .++++++.|+.++||.... +.....+..|. .+..++|+|||+.++.+ .++.|.+||+..
T Consensus       198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~  274 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT  274 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred             ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence            44789999999999998 6777888899999997653 33444555555 45677999999988887 588999999954


Q ss_pred             CcEEEEEecC------------CCcceeeee-cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc-ce
Q 020461           84 GAQLFTFNFD------------SPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-RI  149 (326)
Q Consensus        84 ~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i  149 (326)
                      .+.. .+..+            ..+..+.|+ +++..++.....      .+.++...      .+ ....+..|.. .+
T Consensus       275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~------~i~~~~~~------~~-~~~~~~~~~~~~~  340 (1045)
T 1k32_A          275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG------QAFIQDVS------GT-YVLKVPEPLRIRY  340 (1045)
T ss_dssp             CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT------EEEEECTT------SS-BEEECSCCSCEEE
T ss_pred             eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcC------EEEEEcCC------CC-ceEEccCCCcceE
Confidence            4433 33221            135677788 766544433221      12222211      11 2334556666 88


Q ss_pred             eEEEEecCCcEEEEeeCCCcEE-EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461          150 NRAVWGPLNRTIISAGEDAIVR-IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (326)
Q Consensus       150 ~~~~~~~~~~~l~s~~~d~~i~-~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (326)
                      ..+.|+ +++.|++++.++.+. +||+.+++.. .+   .+|...+..++|+|||++|++++.++.|++||+.+++....
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l---~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~  415 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KF---EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI  415 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-EC---CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Ee---cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence            999999 999999998888888 9998876543 22   25777899999999999999999999999999999887766


Q ss_pred             E-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461          229 Y-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG  307 (326)
Q Consensus       229 ~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s  307 (326)
                      . .+...+..++|+|+++.++.++..+...    ........+++|+...++ ...+..|...+..++|+|||++|++++
T Consensus       416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~----~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          416 ERSREAMITDFTISDNSRFIAYGFPLKHGE----TDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             EECSSSCCCCEEECTTSCEEEEEEEECSST----TCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             ccCCCCCccceEECCCCCeEEEEecCcccc----ccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence            5 3445678999999999887664321000    000111245666655444 445667888899999999999999999


Q ss_pred             CCCcEEEeec
Q 020461          308 EDGYVRLHHF  317 (326)
Q Consensus       308 ~Dg~i~l~~~  317 (326)
                      .++..++|..
T Consensus       491 ~~~~~~~~~~  500 (1045)
T 1k32_A          491 YRSLDPSPDR  500 (1045)
T ss_dssp             SCCCCCEECS
T ss_pred             cccCCcCcch
Confidence            9888877754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=1e-20  Score=176.51  Aligned_cols=282  Identities=10%  Similarity=0.042  Sum_probs=182.2

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      .+.+++|||||++|++++. +.|++|++.++.  .+..+..|...+..++|+|||++|+.++. +.|.+||+.+++....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence            3788999999999998887 899999999883  45567778889999999999999988874 5899999998776543


Q ss_pred             EecCCC-----------------cceeeeecCCeEEEEE-cCcc-cee------------------------ce--eeee
Q 020461           90 FNFDSP-----------------ARSVDFAVGDKLAVIT-TDPF-MEL------------------------NS--AIHV  124 (326)
Q Consensus        90 ~~~~~~-----------------~~~~~~~~~~~~~~~~-~~~~-~~~------------------------~~--~~~~  124 (326)
                      ......                 ...+.|+++++.++.. .+.. ...                        +.  .+.+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            322111                 3557788876644433 2210 000                        00  1111


Q ss_pred             eeeccCCCCCC-CceEEEec--cCccceeEEEEecCCcEEEEeeC-----CCcEEEEECCCCccccccccccCcce----
Q 020461          125 KRIARDPADQG-GESVLILK--GPQGRINRAVWGPLNRTIISAGE-----DAIVRIWDTETGKLLKESDKETGHKK----  192 (326)
Q Consensus       125 ~~~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~h~~----  192 (326)
                      +++      .+ ++......  .|...+..++| |+++.|++++.     +..|.+||+.+++......   .+..    
T Consensus       268 ~d~------~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~  337 (741)
T 2ecf_A          268 ISP------AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH---ETSPTWVP  337 (741)
T ss_dssp             ECS------STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE---EECSSCCC
T ss_pred             EEC------CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE---cCCCCcCC
Confidence            111      11 22222222  46778899999 99998886653     5689999999887654332   1211    


Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecC-CcceEEEEee-ccceEEE-EeCCCCCeeEEecCCCcceeEeecccCceee
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNAV-TMSPLLDHVVLGGGQDASAVTTTDHRAGKFE  269 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~  269 (326)
                      .+..++|+|||+++++++.||.+++|.+. .+. ...+.. ...+..+ .|+|+++.++.++..+..           ..
T Consensus       338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~-----------~~  405 (741)
T 2ecf_A          338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA-----------RE  405 (741)
T ss_dssp             CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT-----------TC
T ss_pred             cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC-----------ce
Confidence            35688999999999999999988888765 334 444432 3456565 599999887766554321           01


Q ss_pred             eEeecccc-eeeeccccccCcceeEEEECCCCceEEeecCC----CcEEEeecC
Q 020461          270 AKFFDKIL-QEEIGGVKGHFGPINALAFNPDGKSFSSGGED----GYVRLHHFD  318 (326)
Q Consensus       270 ~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D----g~i~l~~~~  318 (326)
                      .++|.... +.....+.. ...+..++|||||++|+....+    ..+.+++.+
T Consensus       406 ~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          406 SQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             BEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             EEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            12222111 111122232 4568899999999998766443    456666543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=3.1e-20  Score=162.19  Aligned_cols=163  Identities=10%  Similarity=0.014  Sum_probs=127.8

Q ss_pred             ecCCceeEEEEccCCCEEE----eecCCCCeEEEecCCC--------C---eeeeccCcccceEEEEEcCC-CCeEEEEe
Q 020461            8 GHERPLTYLKYNKDGDLLF----SCAKDHTPTVWFADNG--------E---RLGTYRGHNGAVWCCDVSRD-SMTLITGS   71 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~----s~~~d~~v~iw~~~~~--------~---~~~~~~~h~~~V~~~~~~~~-~~~l~s~~   71 (326)
                      .|...|.+++|+|++++|+    +++.|++|+|||+.++        +   .+..+.+|...|.+++|+|+ +++|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4566799999999999999    8999999999998654        1   24567789999999999998 78999999


Q ss_pred             CCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        72 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      .|++|++||++++....                                                    ...+|...|.+
T Consensus       170 ~Dg~v~iwD~~~~~~~~----------------------------------------------------~~~~~~~~v~~  197 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVC----------------------------------------------------ATLPSTVAVTS  197 (434)
T ss_dssp             TTSCEEEEEESSSEEEE----------------------------------------------------EEECGGGCEEE
T ss_pred             CCCeEEEEEcCCCccee----------------------------------------------------eccCCCCceeE
Confidence            99999999998653211                                                    11245678999


Q ss_pred             EEEecCCcEEEEeeCCCcEEEEECCCCcccccccc----ccCcceeeEEEEEcCCCCeEEEE-eCCC------eEEEeec
Q 020461          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTG-SLDK------SAKLWDA  220 (326)
Q Consensus       152 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~h~~~v~~v~~s~~~~~l~s~-s~dg------~i~iwd~  220 (326)
                      ++|+|++++|++|+.||+|++||.+ ++....+..    ...|...+.+++|++++.++++. +.||      .+++|++
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence            9999999999999999999999998 433332221    11345689999999998777553 3443      3899999


Q ss_pred             CCc
Q 020461          221 RTL  223 (326)
Q Consensus       221 ~~~  223 (326)
                      ++.
T Consensus       277 ~~~  279 (434)
T 2oit_A          277 PKK  279 (434)
T ss_dssp             CCT
T ss_pred             ccC
Confidence            864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1e-20  Score=156.25  Aligned_cols=222  Identities=11%  Similarity=-0.042  Sum_probs=154.7

Q ss_pred             eecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC-CcEEEEEecCCCcceeeeecCC
Q 020461           27 SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNFDSPARSVDFAVGD  105 (326)
Q Consensus        27 s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~  105 (326)
                      +.+.|++|++||+.+++.. .+..|.+.|.+++|+|++++|++++ ++.|.+||+.+ ++.....               
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~---------------   79 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD---------------   79 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC---------------
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec---------------
Confidence            4568899999999888765 4556889999999999999998876 78999999987 5432110               


Q ss_pred             eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEecCCcEEEEee--CCCcEEEEEC--CCCcc
Q 020461          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG--EDAIVRIWDT--ETGKL  180 (326)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~--~d~~i~~wd~--~~~~~  180 (326)
                                                           .++ ...+.++.|+|+++.|++++  .++..+||.+  .+++.
T Consensus        80 -------------------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~  122 (297)
T 2ojh_A           80 -------------------------------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP  122 (297)
T ss_dssp             -------------------------------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred             -------------------------------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence                                                 111 24567789999999999988  3455666654  44432


Q ss_pred             ccccccccCcceeeEEEEEcCCCCeEE-EEeCCCeEEEeecC--CcceEEEEeeccceEEEEeCCCCCeeEEecCCCc-c
Q 020461          181 LKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDAR--TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-S  256 (326)
Q Consensus       181 ~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~  256 (326)
                       ..+.    +...+..++|+|++++|+ +++.|+.+++|+++  +++..........+..++|+|+++.+++++..+. .
T Consensus       123 -~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  197 (297)
T 2ojh_A          123 -RLMT----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQM  197 (297)
T ss_dssp             -EECC----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             -EEee----cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCc
Confidence             2221    223488899999999887 78889999999854  4444322234457899999999998877654332 2


Q ss_pred             eeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC-----------CcEEEeecCCC
Q 020461          257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-----------GYVRLHHFDPD  320 (326)
Q Consensus       257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D-----------g~i~l~~~~~~  320 (326)
                      .+.            .++. .......+..|...+..++|+|||++|++++.+           +.|.+|+++..
T Consensus       198 ~i~------------~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          198 QIW------------RVRV-DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             EEE------------EEET-TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             cEE------------EECC-CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            121            1111 112233455677789999999999999988876           56888887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=1.2e-19  Score=154.86  Aligned_cols=262  Identities=12%  Similarity=0.117  Sum_probs=163.8

Q ss_pred             cCCceeEEEEccCCCEEEeecCC----CCeEEEecCC--CCe--eeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKD----HTPTVWFADN--GER--LGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW   79 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d----~~v~iw~~~~--~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~w   79 (326)
                      +...+..++|+|||++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++++|++++ .+++|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56677889999999999998886    7999998765  432  3344445556667777  788777776 67899999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      ++.....+...      .......+                      ....+          .+.+...+.+++|+|+++
T Consensus       126 ~~~~~g~~~~~------~~~~~~~g----------------------~~~~~----------~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A          126 PIGQDGALLPA------SDVIEFKG----------------------SGPDK----------ERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             EBCTTSCBCSC------SEEEECCC----------------------CCSCT----------TTCSSCCEEEEEECTTSS
T ss_pred             EeCCCCcCccc------ceeEEccC----------------------CCCCc----------cccCCCcceEEEECCCCC
Confidence            98754321000      00000000                      00000          011233467899999999


Q ss_pred             EEEE-eeCCCcEEEEECCCCcc------ccc----cccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcce--
Q 020461          160 TIIS-AGEDAIVRIWDTETGKL------LKE----SDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL--  225 (326)
Q Consensus       160 ~l~s-~~~d~~i~~wd~~~~~~------~~~----~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~--  225 (326)
                      +++. ...++.|.+|++.....      +..    ......+...+..++|+|||+++++++ .++.|.+||+++++.  
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~  247 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE  247 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence            6654 45588999999865431      110    011122345578899999999887777 689999999987654  


Q ss_pred             EEEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecc--cCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          226 IKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH--RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       226 ~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      +..+..    ......++++|+++.++++...+...+..++.  ..+..          ..+..+.. ...+..++|+||
T Consensus       248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~----------~~~~~~~~-g~~~~~~~~spd  316 (361)
T 3scy_A          248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL----------TKVGYQLT-GIHPRNFIITPN  316 (361)
T ss_dssp             EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE----------EEEEEEEC-SSCCCEEEECTT
T ss_pred             eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE----------EEeeEecC-CCCCceEEECCC
Confidence            222221    12356899999999887765431122222222  11111          11111222 346789999999


Q ss_pred             CceEEeec-CCCcEEEeecCCCc
Q 020461          300 GKSFSSGG-EDGYVRLHHFDPDY  321 (326)
Q Consensus       300 ~~~lat~s-~Dg~i~l~~~~~~~  321 (326)
                      |++|++++ .++.|++|.++.+.
T Consensus       317 g~~l~~~~~~~~~v~v~~~d~~~  339 (361)
T 3scy_A          317 GKYLLVACRDTNVIQIFERDQAT  339 (361)
T ss_dssp             SCEEEEEETTTTEEEEEEECTTT
T ss_pred             CCEEEEEECCCCCEEEEEEECCC
Confidence            99887777 67999999988643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=2.1e-20  Score=173.54  Aligned_cols=280  Identities=14%  Similarity=0.151  Sum_probs=175.1

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCee-eeccCcc-----------------cceEEEEEcCCCCeEEEEeCCC
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHN-----------------GAVWCCDVSRDSMTLITGSADQ   74 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-~~~~~h~-----------------~~V~~~~~~~~~~~l~s~~~d~   74 (326)
                      +..+.|+  |+.+++++.|+ | +||..+++.+ ..+..|.                 ..|.+++|+|| +.++.+ .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            3446777  66777788888 8 9999999873 4444433                 46999999999 555544 459


Q ss_pred             cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc-------
Q 020461           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-------  147 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  147 (326)
                      +|++||+.+++..........+..+.|+++++.++...+.      .+.++.+... ....++.......+..       
T Consensus       102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~------~i~v~~~~~~-~~~~g~~~~~~~~~~~~~~~g~~  174 (706)
T 2z3z_A          102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNH------NLYIARGGKL-GEGMSRAIAVTIDGTETLVYGQA  174 (706)
T ss_dssp             EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETT------EEEEEECBCT-TSCCCCCEESCSCCBTTEEESSC
T ss_pred             EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECC------eEEEEecCcc-cccCCCcEEeccCCCCCeEcccc
Confidence            9999999998776655555667778899877655554332      2333333210 0000122222222222       


Q ss_pred             -------ceeEEEEecCCcEEEEee---------------------------------CCCcEEEEECCCCccccccccc
Q 020461          148 -------RINRAVWGPLNRTIISAG---------------------------------EDAIVRIWDTETGKLLKESDKE  187 (326)
Q Consensus       148 -------~i~~~~~~~~~~~l~s~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~  187 (326)
                             .+..+.|+|+++.|++++                                 .+..|.+||+.+++..... ..
T Consensus       175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-~~  253 (706)
T 2z3z_A          175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-TG  253 (706)
T ss_dssp             CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC-CC
T ss_pred             hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec-cC
Confidence                   257899999999999887                                 4567999999887654322 22


Q ss_pred             cCcceeeEEEEEcCCCCeEEEEeCCC-----eEEEeecCCcceEEEEee---cc---ceEEEEeCC--CCCeeEEecCCC
Q 020461          188 TGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLELIKTYVT---ER---PVNAVTMSP--LLDHVVLGGGQD  254 (326)
Q Consensus       188 ~~h~~~v~~v~~s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~---~~---~~~~~~~s~--~~~~~~~~~~~~  254 (326)
                      ..|...+.+++|+|||+.|++++.|+     .|++||+.+++....+..   ..   .+..++|+|  +++.++++...+
T Consensus       254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence            35677899999999999999988776     899999999844444321   11   235689999  887655443322


Q ss_pred             cceeEeecccCceeeeEeecccceeeeccccccCcceeE-EEECCCCceEEeecC-CC--cEEEeecCC
Q 020461          255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA-LAFNPDGKSFSSGGE-DG--YVRLHHFDP  319 (326)
Q Consensus       255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s~d~~~lat~s~-Dg--~i~l~~~~~  319 (326)
                      ...            +..++. ....+..+..|...+.. ++|+|||+.|+.++. ++  .++||.++.
T Consensus       334 ~~~------------l~~~~~-~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          334 WNH------------LYLYDT-TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             SCE------------EEEEET-TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             ccE------------EEEEEC-CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            222            222221 12223344566677876 899999998765554 44  466666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=1.5e-20  Score=159.35  Aligned_cols=239  Identities=12%  Similarity=0.021  Sum_probs=162.1

Q ss_pred             EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEE-EEeCCCcEEEEEccCCcEEEEEec
Q 020461           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      .+++++++.++++++.+++|++||..+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            34678889999999999999999999998887776543 2577899999998654 555789999999988766543321


Q ss_pred             CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC-----
Q 020461           93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-----  167 (326)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----  167 (326)
                      ....                                       .       .....+..++|+|+++++++++.+     
T Consensus        84 ~~~~---------------------------------------~-------~~~~~~~~~~~spdg~~l~~~~~~~~~~~  117 (349)
T 1jmx_B           84 SSVP---------------------------------------G-------EVGRSMYSFAISPDGKEVYATVNPTQRLN  117 (349)
T ss_dssp             CCST---------------------------------------T-------EEEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred             cccc---------------------------------------c-------cccccccceEECCCCCEEEEEcccccccc
Confidence            1000                                       0       001124567899999999888765     


Q ss_pred             -------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-------
Q 020461          168 -------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-------  233 (326)
Q Consensus       168 -------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------  233 (326)
                             +.|.+||+.+++........ .+...+.+++++|+|+ +++++.  .|++||.++++.+..+....       
T Consensus       118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~  193 (349)
T 1jmx_B          118 DHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYS  193 (349)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred             cccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCcccc
Confidence                   89999999876543322211 2334588899999999 666544  49999999988777654321       


Q ss_pred             ------------------c--------------------------------------------eEEEEeCC-CCCeeEEe
Q 020461          234 ------------------P--------------------------------------------VNAVTMSP-LLDHVVLG  250 (326)
Q Consensus       234 ------------------~--------------------------------------------~~~~~~s~-~~~~~~~~  250 (326)
                                        .                                            +..++++| +++.++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~  273 (349)
T 1jmx_B          194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV  273 (349)
T ss_dssp             CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE
T ss_pred             CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE
Confidence                              1                                            22333445 55544443


Q ss_pred             cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                        .              ..+.+|+....+.+..+. ....+..++|+|||++|++++.++.|++|+.+..
T Consensus       274 --~--------------~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          274 --L--------------NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             --E--------------SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             --c--------------CeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence              1              123445544333333222 2235789999999999988999999999998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=2.7e-20  Score=157.36  Aligned_cols=233  Identities=13%  Similarity=0.142  Sum_probs=152.7

Q ss_pred             EEEeecCCCCeEEEecC-CCCe-eeeccCcccceEEEEEcCCCCeEEEEeCC-CcEEEEEcc--CCcEEEEEecCCCcce
Q 020461           24 LLFSCAKDHTPTVWFAD-NGER-LGTYRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLWNVE--TGAQLFTFNFDSPARS   98 (326)
Q Consensus        24 ~l~s~~~d~~v~iw~~~-~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-~~i~~wd~~--~~~~~~~~~~~~~~~~   98 (326)
                      ++++++.|+.|++|++. +++. ......|...+.+++|+|++++|++++.+ +.|++|++.  +++....         
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~---------   77 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA---------   77 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE---------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec---------
Confidence            45555889999999985 3432 12223467788999999999999888876 999999987  3332110         


Q ss_pred             eeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEEECCC
Q 020461           99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTET  177 (326)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~wd~~~  177 (326)
                                                               ..+..+ ..+..++|+|+++.+++++ .++.|.+||+.+
T Consensus        78 -----------------------------------------~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~  115 (343)
T 1ri6_A           78 -----------------------------------------AESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  115 (343)
T ss_dssp             -----------------------------------------EEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             -----------------------------------------cccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCC
Confidence                                                     001111 1456788999999776655 488999999943


Q ss_pred             C---ccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCC-cceEE----EEe--eccceEEEEeCCCCCe
Q 020461          178 G---KLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART-LELIK----TYV--TERPVNAVTMSPLLDH  246 (326)
Q Consensus       178 ~---~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~-~~~~~----~~~--~~~~~~~~~~s~~~~~  246 (326)
                      +   +....+    .....+.+++++|++.++++++ .++.|++||+.+ ++...    ...  ....+..++++|+++.
T Consensus       116 ~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          116 GLPVGVVDVV----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             TEEEEEEEEE----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             Cccccccccc----cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence            2   222222    1223588899999999888887 899999999987 54432    121  2346788999999998


Q ss_pred             eEEecCCCcceeEeeccc--CceeeeEeecccceeeecccc-c--cCcceeEEEECCCCceEE-eecCCCcEEEeecCC
Q 020461          247 VVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVK-G--HFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDP  319 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~-~--h~~~v~~v~~s~d~~~la-t~s~Dg~i~l~~~~~  319 (326)
                      ++++...+. .+..+|..  .+....       ...+..+. +  ....+..++|+|||++|+ ++..|+.|++|++++
T Consensus       192 l~~~~~~~~-~i~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          192 AYCVNELNS-SVDVWELKDPHGNIEC-------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEEEETTTT-EEEEEESSCTTSCCEE-------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEeCCCC-EEEEEEecCCCCcEEE-------EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            776653332 23333332  122110       00111111 1  123567899999998776 566899999999984

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=9.9e-20  Score=153.48  Aligned_cols=268  Identities=12%  Similarity=0.049  Sum_probs=178.1

Q ss_pred             CEEEeecCCCCeEEEecCCCCeeeeccCccc--ceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecCC-----
Q 020461           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNG--AVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS-----   94 (326)
Q Consensus        23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~-----   94 (326)
                      ++|++++.+++|++||..+++.+..+.....  .+..++|+|+++++ ++++.++.|.+||+.+++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988877763322  47889999999865 555668899999999998877666543     


Q ss_pred             -CcceeeeecCCeEEEEEcCcc-----ce--eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           95 -PARSVDFAVGDKLAVITTDPF-----ME--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                       ....+.+++++..+++.....     ..  ....+.+++..      .++....+.. ...+..+.|+|++++++++  
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE------TLSRRKAFEA-PRQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT------TTEEEEEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC------CCcEEEEEeC-CCCcceeEECCCCCEEEEe--
Confidence             456677887665444432100     00  11233333321      2233333333 3457788999999988777  


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC------------------------eEEEeecCC
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------------------------SAKLWDART  222 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg------------------------~i~iwd~~~  222 (326)
                      ++.|.+||+.+++....+... .+..   .+.++|++..++..+.++                        .|.+||+++
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  228 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQ-SWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECST-TTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             CCeEEEEECCCCcEeeeeecc-ccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence            688999999988765543321 1111   236788888766554332                        468999999


Q ss_pred             cceEEEEe---eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          223 LELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       223 ~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      ++.. ...   ....+..++++|+++.++++  .  ..+.            +|+....+.+..+.. ...+.+++|+||
T Consensus       229 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~--~~v~------------~~d~~~~~~~~~~~~-~~~~~~~~~s~d  290 (337)
T 1pby_B          229 GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--Y--NVLE------------SFDLEKNASIKRVPL-PHSYYSVNVSTD  290 (337)
T ss_dssp             CCEE-EEEEEECSSCEEEEEECTTSSEEEEE--E--SEEE------------EEETTTTEEEEEEEC-SSCCCEEEECTT
T ss_pred             CCce-EeecCCCCCceeeEEECCCCCEEEEe--C--CeEE------------EEECCCCcCcceecC-CCceeeEEECCC
Confidence            8775 322   22357789999999888776  1  2233            333333222222222 245789999999


Q ss_pred             CceEEeecCCCcEEEeecCCCc
Q 020461          300 GKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       300 ~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      |++|++++.|+.|++|+....-
T Consensus       291 g~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          291 GSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             SCEEEEESBSSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCcEEEEECcCCc
Confidence            9999999999999999987543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=2.9e-19  Score=150.57  Aligned_cols=236  Identities=10%  Similarity=0.036  Sum_probs=161.6

Q ss_pred             eecCCceeEEEEccCCCEEEeecC-CCCeEEEecCCCCe-eeeccCcccceEEEEEcCCCCeEEEEeCCC---cEEEEEc
Q 020461            7 KGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQ---TAKLWNV   81 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~~~~l~s~~~-d~~v~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~---~i~~wd~   81 (326)
                      ..+...+ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|++||+
T Consensus        37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred             EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence            3445556 9999999996665554 89999999999987 777777777777799999999998555553   8999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCe-EEEEEcCccceecee-eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      .+++.+..+........+.++++++ +.+.....     .. +.++.+.......... ...+ ........++|+|+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~  188 (331)
T 3u4y_A          116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGN  188 (331)
T ss_dssp             TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSS
T ss_pred             CCCCeEEEEECCCCccceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCC
Confidence            9998887776665667788888765 43333221     11 2333332110000000 1111 2334578899999998


Q ss_pred             EEE-EeeCCCcEEEEECCCCcc---ccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcce--EEEEeec
Q 020461          160 TII-SAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL--IKTYVTE  232 (326)
Q Consensus       160 ~l~-s~~~d~~i~~wd~~~~~~---~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~--~~~~~~~  232 (326)
                      +++ ++..++.|.+||+.+++.   +..+.    ....+..++++|+|++++.++ .++.|.+||+++++.  +..+...
T Consensus       189 ~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~  264 (331)
T 3u4y_A          189 FAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG  264 (331)
T ss_dssp             EEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred             EEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence            654 555789999999998876   44332    235678899999999776554 578899999998877  4433221


Q ss_pred             -----c---ceEEEEeCCCCCeeEEecCCC
Q 020461          233 -----R---PVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       233 -----~---~~~~~~~s~~~~~~~~~~~~~  254 (326)
                           .   ..+.++|+|+++.++++...+
T Consensus       265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          265 LLIDPRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             CCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             cccCCCCcccccceEECCCCCEEEEecCCC
Confidence                 1   124589999999887765443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=6.5e-21  Score=177.30  Aligned_cols=280  Identities=11%  Similarity=0.042  Sum_probs=181.5

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc---ceEEEEEcCCCCeEEEEeC---------CCcEEEEEc
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSA---------DQTAKLWNV   81 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~~~---------d~~i~~wd~   81 (326)
                      ..++|+|||++++++ .|++|++|+..+++....+.+|..   .|.+++|||||++|+.++.         +++|++||+
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            467999999766654 699999999999998777766654   3899999999999998876         789999999


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE---------EeccCccc----
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL---------ILKGPQGR----  148 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~----  148 (326)
                      .+++.+........+..+.|+|+++.++...+.      .+.++.+..      +....         .+.|+...    
T Consensus        98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~------~i~~~~~~~------g~~~~l~~~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A           98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQN------NIYLKQRPG------DPPFQITFNGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             TTTEECCSSCCCSSBCCEEECSSTTCEEEEETT------EEEEESSTT------SCCEECCCCCBTTTEEESSCCHHHHH
T ss_pred             CCCccccceecCcccccceECCCCCEEEEEECC------eEEEEeCCC------CCcEEEecCCCcCCeEcccccceeee
Confidence            988752111223456677888877655544332      233333211      11111         11222222    


Q ss_pred             -----eeEEEEecCCcEEEEeeCCC----------------------------------cEEEEECCCCccc--ccc---
Q 020461          149 -----INRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLL--KES---  184 (326)
Q Consensus       149 -----i~~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~--~~~---  184 (326)
                           ...+.|+|+|+.|++++.|.                                  .|++||+.+++..  ..+   
T Consensus       166 e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  245 (719)
T 1z68_A          166 EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP  245 (719)
T ss_dssp             HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred             ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence                 24799999999999887653                                  7889999887642  111   


Q ss_pred             ccccCcceeeEEEEEcCCCCeEEEEeCC----CeEEEee----cCCcceEEEEe-----eccceE-----EEEeCCCCCe
Q 020461          185 DKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWD----ARTLELIKTYV-----TERPVN-----AVTMSPLLDH  246 (326)
Q Consensus       185 ~~~~~h~~~v~~v~~s~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~~-----~~~~~~-----~~~~s~~~~~  246 (326)
                      ....+|...+..++|+||+..+++....    ..|.+||    ..++++.....     +...+.     .+.|+|+++.
T Consensus       246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  325 (719)
T 1z68_A          246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS  325 (719)
T ss_dssp             HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred             ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence            1123578889999999998777764432    2488899    87776544331     223344     7889999987


Q ss_pred             eEEe-cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCC-----CcEEEeecCC
Q 020461          247 VVLG-GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGED-----GYVRLHHFDP  319 (326)
Q Consensus       247 ~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~D-----g~i~l~~~~~  319 (326)
                      ++.. ...++           ...++.|+...++ ...+..+...+..+.++ +++.++..+.+     +.++||.++.
T Consensus       326 l~~~~~~~~g-----------~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          326 YYKIFSDKDG-----------YKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEEEECTTS-----------CEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEEEccCC-----------ceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            6552 22221           1234444433222 12234455567787777 77776655554     8899998865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=1.2e-19  Score=168.80  Aligned_cols=282  Identities=10%  Similarity=0.055  Sum_probs=174.2

Q ss_pred             eeeecCC---ceeEEEEccCCCEEEeecCC---------CCeEEEecCCCCe--eeeccCcccceEEEEEcCCCCeEEEE
Q 020461            5 LMKGHER---PLTYLKYNKDGDLLFSCAKD---------HTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITG   70 (326)
Q Consensus         5 ~~~~h~~---~i~~~~~s~~~~~l~s~~~d---------~~v~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~   70 (326)
                      ++.+|..   .+.+++|||||++|++++.+         +.+++||+.+++.  +....+|...+..++|||||+.|+.+
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~  131 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI  131 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEE
Confidence            4445554   38999999999999998875         6777999998876  22334566668999999999999988


Q ss_pred             eCCCcEEEEEccCCcEEEEEec-CCCc------------------ceeeeecCCeEEEEEc-Cc-ccee-----------
Q 020461           71 SADQTAKLWNVETGAQLFTFNF-DSPA------------------RSVDFAVGDKLAVITT-DP-FMEL-----------  118 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~~~~~~~-~~~~------------------~~~~~~~~~~~~~~~~-~~-~~~~-----------  118 (326)
                      +. +.|++||+.+++....... ...+                  ..+.|+++++.++... +. ....           
T Consensus       132 ~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~  210 (723)
T 1xfd_A          132 FE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY  210 (723)
T ss_dssp             ET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred             EC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC
Confidence            86 7899999998876654432 1112                  4678888776554432 21 0000           


Q ss_pred             ----------------ceeeeeeeeccCCCCCCCceEEEeccC------ccceeEEEEecCCcEEEEeeC----CCcEEE
Q 020461          119 ----------------NSAIHVKRIARDPADQGGESVLILKGP------QGRINRAVWGPLNRTIISAGE----DAIVRI  172 (326)
Q Consensus       119 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~~----d~~i~~  172 (326)
                                      ...+.++++.      ++.....+..+      ...+..+.|+|+++.+++...    +..|.+
T Consensus       211 ~~~~~~~~~~~G~~~~~~~l~~~d~~------~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  284 (723)
T 1xfd_A          211 PTVKPYHYPKAGSENPSISLHVIGLN------GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (723)
T ss_dssp             CCCEEEECCBTTSCCCEEEEEEEESS------SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             CcceeccCCCCCCCCCeeEEEEEECC------CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence                            0012222211      12222333332      567889999999998876643    357999


Q ss_pred             EECCCCccccccccccCcceee----EEEEEcCCCCeEEE--EeCCC------eEEEee-cCCcc--eEEEEee-ccceE
Q 020461          173 WDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT--GSLDK------SAKLWD-ARTLE--LIKTYVT-ERPVN  236 (326)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v----~~v~~s~~~~~l~s--~s~dg------~i~iwd-~~~~~--~~~~~~~-~~~~~  236 (326)
                      ||+.+++.......  .+...+    ..++|+|||+.|+.  +..++      .|.+|| ..+++  +...+.. ...+.
T Consensus       285 ~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~  362 (723)
T 1xfd_A          285 CDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT  362 (723)
T ss_dssp             EETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred             EeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence            99998875443221  122222    37899999998775  45667      577777 34444  1344432 22343


Q ss_pred             -EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc--ceeeeccccc---cCcceeEEEECCCCceEEee
Q 020461          237 -AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEIGGVKG---HFGPINALAFNPDGKSFSSG  306 (326)
Q Consensus       237 -~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~---h~~~v~~v~~s~d~~~lat~  306 (326)
                       .++|+|+++.++..+..+..         +  ..++|...  .......+..   |...+..++|||||++|+..
T Consensus       363 ~~~~~spdg~~l~~~~~~~~~---------~--~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          363 KILAYDEKGNKIYFLSTEDLP---------R--RRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             EEEEEETTTTEEEEEESSSCT---------T--CCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             eeeEEcCCCCEEEEEEcCCCC---------c--ceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence             46899999988766544310         0  11222211  1111112222   56778999999999987654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=2.4e-19  Score=154.44  Aligned_cols=302  Identities=12%  Similarity=0.000  Sum_probs=179.5

Q ss_pred             eeeeecCCceeE-----EEEccCCCEEEeecC-CCC--eEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCc
Q 020461            4 ILMKGHERPLTY-----LKYNKDGDLLFSCAK-DHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT   75 (326)
Q Consensus         4 ~~~~~h~~~i~~-----~~~s~~~~~l~s~~~-d~~--v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~   75 (326)
                      +.+..|......     .+|||||++|+.++. ++.  |.+|++.+++......++...+..+.|+||++.|+.++.++.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            445556554444     789999999988887 664  777799898887777777777767889999999999999999


Q ss_pred             EEEEEccCCcEEEEEecCCCcc-eee--eecCCeEEEEEc-Ccc----------------ceeceeeeeeeeccCCCCCC
Q 020461           76 AKLWNVETGAQLFTFNFDSPAR-SVD--FAVGDKLAVITT-DPF----------------MELNSAIHVKRIARDPADQG  135 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~  135 (326)
                      |.+||+.+++.......+.... ...  +.++...++... ...                ......+..+.+      .+
T Consensus       104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~------~~  177 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL------KT  177 (388)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET------TT
T ss_pred             EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC------CC
Confidence            9999999988766555433211 122  234443333211 000                000011222211      11


Q ss_pred             CceEEEeccCccceeEEEEec-CCcEEEEeeCC------CcEEEEECCCCccccccccccCc-ceeeEEEEEcCCCCeEE
Q 020461          136 GESVLILKGPQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFL  207 (326)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~  207 (326)
                      ++ ...+..+...+..+.|+| +++.|+....+      ..|.++|...++.. .+..  .+ ...+....|+|||+.|+
T Consensus       178 g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~--~~~~~~~~~~~~spdg~~l~  253 (388)
T 3pe7_A          178 GE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKT--HAEGESCTHEFWVPDGSALV  253 (388)
T ss_dssp             CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCC--CCTTEEEEEEEECTTSSCEE
T ss_pred             Cc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eeee--CCCCcccccceECCCCCEEE
Confidence            22 233334556788999999 99988776653      36888887655432 2221  11 14577889999999886


Q ss_pred             EEeCC-----CeEEEeecCCcceEEEEeeccc------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc
Q 020461          208 TGSLD-----KSAKLWDARTLELIKTYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI  276 (326)
Q Consensus       208 s~s~d-----g~i~iwd~~~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (326)
                      ..+.+     ..|++||+.+++...-......      .....|+|+++.++.....+...     ...+...+++|+..
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-----~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          254 YVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY-----KIENDPFLYVFNMK  328 (388)
T ss_dssp             EEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------------CCCCEEEEEETT
T ss_pred             EEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc-----ccCCCCEEEEEecc
Confidence            65432     2399999998875332221110      12236788887776543210000     00011234444433


Q ss_pred             ceeeeccccccCc-----------ceeEEEECCCCceEEeec-CCCcEEEeecCCCc
Q 020461          277 LQEEIGGVKGHFG-----------PINALAFNPDGKSFSSGG-EDGYVRLHHFDPDY  321 (326)
Q Consensus       277 ~~~~~~~~~~h~~-----------~v~~v~~s~d~~~lat~s-~Dg~i~l~~~~~~~  321 (326)
                      .++. ..+..|..           .+..++|+|||+.|+..+ .+|...||.++-..
T Consensus       329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence            3221 22333433           578899999999877655 58899998877543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=4.8e-19  Score=151.50  Aligned_cols=254  Identities=9%  Similarity=0.101  Sum_probs=163.7

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecC-CCCeeeeccCc-ccceEEEEEcCCCCe--EEEEe-------------C
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRGH-NGAVWCCDVSRDSMT--LITGS-------------A   72 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~-~~~~~~~~~~h-~~~V~~~~~~~~~~~--l~s~~-------------~   72 (326)
                      ...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+..++|+|++++  +++++             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3467899999999999998888 99999987 77665432211 123556889999994  55653             6


Q ss_pred             CCcEEEEEccC-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           73 DQTAKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        73 d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      ++++++|++.. ++.......                                  .              ...+...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~----------------------------------~--------------~~~~~~~~~~  149 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQN----------------------------------Y--------------EYQENTGIHG  149 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEE----------------------------------E--------------ECCTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEee----------------------------------E--------------EeCCCCcceE
Confidence            88999999863 432211100                                  0              0012345778


Q ss_pred             EEEecCCcEEEEee-CCCcEEEEECC-CCccccccccc-cCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecC--Ccce
Q 020461          152 AVWGPLNRTIISAG-EDAIVRIWDTE-TGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDAR--TLEL  225 (326)
Q Consensus       152 ~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~--~~~~  225 (326)
                      ++|+|++++++++. .++.|++||+. +++........ ..|...+..++|+|||+++++++. +++|.+|++.  +++.
T Consensus       150 ~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            89999999887665 46899999998 66543211111 123456889999999999988775 7899999765  5554


Q ss_pred             EE---EEee---c----c-------ceEEEE-eCCCCCeeEEecCCCc----ceeEeeccc-CceeeeEeecccceeeec
Q 020461          226 IK---TYVT---E----R-------PVNAVT-MSPLLDHVVLGGGQDA----SAVTTTDHR-AGKFEAKFFDKILQEEIG  282 (326)
Q Consensus       226 ~~---~~~~---~----~-------~~~~~~-~s~~~~~~~~~~~~~~----~~~~~~d~~-~~~~~~~~~~~~~~~~~~  282 (326)
                      ..   .+..   .    .       .+..++ ++|+++.++++.....    ..+..++.. .+...          .+.
T Consensus       230 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~----------~~~  299 (365)
T 1jof_A          230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE----------KQL  299 (365)
T ss_dssp             EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE----------EEE
T ss_pred             EEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE----------Eee
Confidence            32   2211   1    1       477899 9999998876543221    022233221 11110          000


Q ss_pred             -cccccCcceeEEEECC---CCceEEeecCC-CcEEEeecCCCce
Q 020461          283 -GVKGHFGPINALAFNP---DGKSFSSGGED-GYVRLHHFDPDYF  322 (326)
Q Consensus       283 -~~~~h~~~v~~v~~s~---d~~~lat~s~D-g~i~l~~~~~~~~  322 (326)
                       ....+...+..++|+|   ||++|++++.+ ++|++|+++.+.+
T Consensus       300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l  344 (365)
T 1jof_A          300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence             0122334567899999   89999988875 9999999988744

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=6.7e-18  Score=143.27  Aligned_cols=226  Identities=12%  Similarity=0.030  Sum_probs=165.1

Q ss_pred             CceeEEEEccCCCE-EEeecCCCCeEEEecCCCCeeeeccCcccc---------eEEEEEcCCCCeEEEEe--CCCcEEE
Q 020461           11 RPLTYLKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGA---------VWCCDVSRDSMTLITGS--ADQTAKL   78 (326)
Q Consensus        11 ~~i~~~~~s~~~~~-l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~---------V~~~~~~~~~~~l~s~~--~d~~i~~   78 (326)
                      ..+..++|+|+|++ +++...++.|.+||.++++.+..+..+...         +..++|+|+++++++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            34678999999995 555666899999999999988877665432         68899999999877766  4788999


Q ss_pred             EEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec----cCccceeEEE
Q 020461           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----GPQGRINRAV  153 (326)
Q Consensus        79 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~  153 (326)
                      ||+.+++.+..+. .......+.+++++..+++...     ...+..++..      .++....+.    ++...+..++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~  237 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-----DGELITIDTA------DNKILSRKKLLDDGKEHFFINIS  237 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-----TSEEEEEETT------TTEEEEEEECCCSSSCCCEEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-----CCeEEEEECC------CCeEEEEEEcCCCCCCcccceEE
Confidence            9999998887776 3344667778876654444332     1122222221      223333333    2455677899


Q ss_pred             EecCCcEEEEee-CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcceEEEEee
Q 020461          154 WGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       154 ~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~  231 (326)
                      |+|+++.++.++ .++.|.+||+.+++....+..  +.   ...++++|++++++.++ .++.|.+||..+++.+..+..
T Consensus       238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~  312 (353)
T 3vgz_A          238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT  312 (353)
T ss_dssp             EETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence            999999776555 459999999998887665432  21   25789999999666555 699999999999999988877


Q ss_pred             ccceEEEEeCCCCCeeEEecC
Q 020461          232 ERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       232 ~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      ...+..++++|+++.++++..
T Consensus       313 ~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          313 PTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             CSEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCCeEEEcCCCCEEEEEEc
Confidence            778899999999998877644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=1.7e-18  Score=145.86  Aligned_cols=223  Identities=16%  Similarity=0.048  Sum_probs=157.8

Q ss_pred             ceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccC-c----ccceEEEEEcCCCCeEEEEe------------CC
Q 020461           12 PLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRG-H----NGAVWCCDVSRDSMTLITGS------------AD   73 (326)
Q Consensus        12 ~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~-h----~~~V~~~~~~~~~~~l~s~~------------~d   73 (326)
                      .+..++|+|+++++ ++++.++.|.+||+.+++.+..+.. +    ...+..++|+|+++++++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47889999999765 5666789999999999988776653 2    23577899999999988886            57


Q ss_pred             CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEE
Q 020461           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (326)
                      +.|.+||+.+++....+........+.+++++..+++...       .+.++++.      .++....+..+.. .....
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------~i~~~d~~------~~~~~~~~~~~~~-~~~~~  180 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR-------DLHVMDPE------AGTLVEDKPIQSW-EAETY  180 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS-------SEEEEETT------TTEEEEEECSTTT-TTTTB
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCC-------eEEEEECC------CCcEeeeeecccc-CCCce
Confidence            9999999999887777665555667778877664444321       22222221      1223333332220 01226


Q ss_pred             EecCCcEEEEeeC-CC-----------------------cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461          154 WGPLNRTIISAGE-DA-----------------------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG  209 (326)
Q Consensus       154 ~~~~~~~l~s~~~-d~-----------------------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~  209 (326)
                      |+|++..++..+. ++                       .|.+||+.+++.. ... ...+...+.+++++|++.+++++
T Consensus       181 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~-~~~~~~~~~~~~~s~dg~~l~~~  258 (337)
T 1pby_B          181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE-VRIMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE-EEECSSCEEEEEECTTSSEEEEE
T ss_pred             eCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee-cCCCCCceeeEEECCCCCEEEEe
Confidence            7888776554332 22                       4689999888764 221 22355567889999999999988


Q ss_pred             eCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461          210 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       210 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                        ++.|++||+++++.+..+.....+.+++++|+++.+++++.
T Consensus       259 --~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  299 (337)
T 1pby_B          259 --YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             --ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB
T ss_pred             --CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC
Confidence              79999999999998888877677889999999998887643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=5.8e-19  Score=164.61  Aligned_cols=240  Identities=12%  Similarity=0.085  Sum_probs=158.3

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccce-----EEEEEcCCCCeEEEEeCCC---------cEE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-----WCCDVSRDSMTLITGSADQ---------TAK   77 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V-----~~~~~~~~~~~l~s~~~d~---------~i~   77 (326)
                      ....++|+|||++++++  |++|++|+..++++...+.+|....     ..++|||||++|+.++.++         .+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45688999999999886  8999999999999887777776432     3478899999999988874         445


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +||+.+++..                                                     .+..+.+.+...+|||+
T Consensus        96 ~~d~~~~~~~-----------------------------------------------------~l~~~~~~~~~~~~SPd  122 (740)
T 4a5s_A           96 IYDLNKRQLI-----------------------------------------------------TEERIPNNTQWVTWSPV  122 (740)
T ss_dssp             EEETTTTEEC-----------------------------------------------------CSSCCCTTEEEEEECSS
T ss_pred             EEECCCCcEE-----------------------------------------------------EcccCCCcceeeEECCC
Confidence            8888776431                                                     01223446778899999


Q ss_pred             CcEEEEeeCCCcEEEEECCCCccccccccccCcce-----------------eeEEEEEcCCCCeEEEEeCCC-------
Q 020461          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-----------------TITSLAKAADGSHFLTGSLDK-------  213 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~-----------------~v~~v~~s~~~~~l~s~s~dg-------  213 (326)
                      |+.|+.+. |+.|.+||+.+++..+. .. .++..                 ...++.|||||++|+.++.|.       
T Consensus       123 G~~la~~~-~~~i~~~~~~~~~~~~l-t~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~  199 (740)
T 4a5s_A          123 GHKLAYVW-NNDIYVKIEPNLPSYRI-TW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (740)
T ss_dssp             TTCEEEEE-TTEEEEESSTTSCCEEC-CS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             CCEEEEEE-CCeEEEEECCCCceEEE-cC-CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEE
Confidence            99998874 67899999988765432 11 12221                 123589999999999876432       


Q ss_pred             -----------------------------eEEEeecCC---cc--eEEEEe-------eccceEEEEeCCCCCeeEEecC
Q 020461          214 -----------------------------SAKLWDART---LE--LIKTYV-------TERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       214 -----------------------------~i~iwd~~~---~~--~~~~~~-------~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                                                   +|++||+.+   ++  ....+.       ....+..++|+|+++.++....
T Consensus       200 ~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~  279 (740)
T 4a5s_A          200 YSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR  279 (740)
T ss_dssp             EEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence                                         488899988   73  222332       2334778899999875443221


Q ss_pred             CCcceeEeecccCceeeeEeeccccee------eeccc--cccCccee-----EEEECCCCceEE-eec-CCCcEEEeec
Q 020461          253 QDASAVTTTDHRAGKFEAKFFDKILQE------EIGGV--KGHFGPIN-----ALAFNPDGKSFS-SGG-EDGYVRLHHF  317 (326)
Q Consensus       253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~--~~h~~~v~-----~v~~s~d~~~la-t~s-~Dg~i~l~~~  317 (326)
                      .+          .....+.+++...++      .+..+  .+|.+.|.     ..+|+|||+.|+ ..+ .+|.-.||.+
T Consensus       280 r~----------~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~  349 (740)
T 4a5s_A          280 RI----------QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF  349 (740)
T ss_dssp             SS----------TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             CC----------CCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence            11          112234444433322      11111  34656655     789999999876 555 5666666555


Q ss_pred             CC
Q 020461          318 DP  319 (326)
Q Consensus       318 ~~  319 (326)
                      +.
T Consensus       350 ~~  351 (740)
T 4a5s_A          350 QI  351 (740)
T ss_dssp             ET
T ss_pred             EC
Confidence            43

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=9.3e-17  Score=132.44  Aligned_cols=242  Identities=12%  Similarity=0.125  Sum_probs=163.1

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc------CcccceEEEEE-cCCCCeEEEEeC-CCcEEEE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------GHNGAVWCCDV-SRDSMTLITGSA-DQTAKLW   79 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~------~h~~~V~~~~~-~~~~~~l~s~~~-d~~i~~w   79 (326)
                      +|...+.+++++++++++++...++.|.+|+.. ++.+..+.      +|...+..+++ .++++++++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            345678999999999999998899999999976 65555553      34456889999 466666655533 7889999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      | .+++.+..+..                                                   .+...+..++++|+++
T Consensus       106 d-~~g~~~~~~~~---------------------------------------------------~~~~~~~~i~~~~~g~  133 (286)
T 1q7f_A          106 N-QYGQFVRKFGA---------------------------------------------------TILQHPRGVTVDNKGR  133 (286)
T ss_dssp             C-TTSCEEEEECT---------------------------------------------------TTCSCEEEEEECTTSC
T ss_pred             C-CCCcEEEEecC---------------------------------------------------ccCCCceEEEEeCCCC
Confidence            9 44443322100                                                   1123456788899998


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cceE
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVN  236 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~  236 (326)
                      .+++...++.|.+||.. ++....+.. .++...+..++++++|..+++.+.++.|++||.. ++.+..+...   ..+.
T Consensus       134 l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~  210 (286)
T 1q7f_A          134 IIVVECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPI  210 (286)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEE
T ss_pred             EEEEECCCCEEEEEcCC-CCEEEEeCC-CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCc
Confidence            88887888999999964 444433321 1334568899999999988888889999999974 5555665433   4678


Q ss_pred             EEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc--CcceeEEEECCCCceEEeecCCCcEEE
Q 020461          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       237 ~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      .+++++++...++..+.. ..+..+|.. +.            .+..+..+  ...+..++++|+|+++++ +.|++|++
T Consensus       211 ~i~~d~~G~l~v~~~~~~-~~i~~~~~~-g~------------~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v  275 (286)
T 1q7f_A          211 GVGINSNGEILIADNHNN-FNLTIFTQD-GQ------------LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYI  275 (286)
T ss_dssp             EEEECTTCCEEEEECSSS-CEEEEECTT-SC------------EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEE
T ss_pred             EEEECCCCCEEEEeCCCC-EEEEEECCC-CC------------EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEE
Confidence            999999886544433322 123333321 11            11111112  234779999999998887 56999999


Q ss_pred             eecCCC
Q 020461          315 HHFDPD  320 (326)
Q Consensus       315 ~~~~~~  320 (326)
                      |++...
T Consensus       276 ~~~~~~  281 (286)
T 1q7f_A          276 YRYVQL  281 (286)
T ss_dssp             EECSCC
T ss_pred             EEcccc
Confidence            998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=1.3e-16  Score=134.44  Aligned_cols=258  Identities=15%  Similarity=0.136  Sum_probs=175.7

Q ss_pred             CCceeEEEEccCCCEEEeecCC------------------------CCeEEEecCCCCeeeecc-CcccceEEEEEcCCC
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKD------------------------HTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS   64 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d------------------------~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~   64 (326)
                      ...+..++++|+|+++++.+.+                        ++|.+||..+++.+..+. ++-.....+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4568999999999999988877                        479999998898876654 344578899999999


Q ss_pred             CeEEEEeCCCcEEEEEccCCc-EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461           65 MTLITGSADQTAKLWNVETGA-QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (326)
Q Consensus        65 ~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (326)
                      +++++...++.|++||.+... .+..+....                                       ..+.    -.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~---------------------------------------~~g~----~~  139 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSM---------------------------------------QPGS----DQ  139 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTT---------------------------------------BCCC----ST
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccC---------------------------------------CCCC----Cc
Confidence            988888889999999976432 111110000                                       0000    01


Q ss_pred             cCccceeEEEEec-CCcEEEEee-CCCcEEEEECCCCccccccccc-------cCcceeeEEEEEcCC-CCeEEEEeCCC
Q 020461          144 GPQGRINRAVWGP-LNRTIISAG-EDAIVRIWDTETGKLLKESDKE-------TGHKKTITSLAKAAD-GSHFLTGSLDK  213 (326)
Q Consensus       144 ~~~~~i~~~~~~~-~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~-------~~h~~~v~~v~~s~~-~~~l~s~s~dg  213 (326)
                      ++......++++| ++..+++.+ .++.|++|| .+++.+..+...       .++......++++++ +..+++...++
T Consensus       140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~  218 (329)
T 3fvz_A          140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG  218 (329)
T ss_dssp             TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred             cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence            2334567899999 777778776 699999999 456555443211       123344789999998 77778888899


Q ss_pred             eEEEeecCCcceEEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc---ccc
Q 020461          214 SAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV---KGH  287 (326)
Q Consensus       214 ~i~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~h  287 (326)
                      .|++||..+++.+..+..   ...+..++++|  ..++...+..  .  ..+.  ....+..|+...++.+..+   .++
T Consensus       219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~--~--v~~~--~~~~v~~~~~~~g~~~~~~~~~~~~  290 (329)
T 3fvz_A          219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKP--Y--FGDQ--EPVQGFVMNFSSGEIIDVFKPVRKH  290 (329)
T ss_dssp             EEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCC--C--TTCS--CCCCEEEEETTTCCEEEEECCSSSC
T ss_pred             EEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCE--E--eccC--CCcEEEEEEcCCCeEEEEEcCCCCc
Confidence            999999998988888743   24577888888  3333332211  0  0111  1112344443333333332   356


Q ss_pred             CcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          288 FGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       288 ~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ......|+++|+|..+++...+++|++|+.+.
T Consensus       291 ~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          291 FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            67789999999999999999999999998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=2.4e-17  Score=139.84  Aligned_cols=232  Identities=11%  Similarity=0.069  Sum_probs=142.8

Q ss_pred             CCCCeEEEec--CCCCeee-eccCcccceEEEEEcCCCCeEEEEeC---CCcEEEEEccCCcEEEEEecCCCcceeeeec
Q 020461           30 KDHTPTVWFA--DNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAV  103 (326)
Q Consensus        30 ~d~~v~iw~~--~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  103 (326)
                      .++.+.+|.+  ++++... ....+...+..++|+|+++ |++++.   ++.|.+||+.+++....              
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~--------------   78 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL--------------   78 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE--------------
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe--------------
Confidence            4556777755  4555432 2334556678899999999 665554   68999999966543111              


Q ss_pred             CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEEECC-CCcc-
Q 020461          104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTE-TGKL-  180 (326)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~-  180 (326)
                                                          .....+...+..++|+|++++|++++ .++.|.+||+. +++. 
T Consensus        79 ------------------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~  122 (347)
T 3hfq_A           79 ------------------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT  122 (347)
T ss_dssp             ------------------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             ------------------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence                                                00111233456789999999888777 78999999995 3322 


Q ss_pred             -ccccccccC-------cceeeEEEEEcCCCCeEEEEeCCCeEEEeecC-CcceEEE--Ee--eccceEEEEeCCCCCee
Q 020461          181 -LKESDKETG-------HKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKT--YV--TERPVNAVTMSPLLDHV  247 (326)
Q Consensus       181 -~~~~~~~~~-------h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~--~~--~~~~~~~~~~s~~~~~~  247 (326)
                       +..+. ..+       +...+.+++++|+|+.+++...++.|++||+. +++....  +.  ....+..++|+|+++.+
T Consensus       123 ~~~~~~-~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l  201 (347)
T 3hfq_A          123 LTDTVQ-HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA  201 (347)
T ss_dssp             EEEEEE-CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             ecceee-cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence             11111 001       12347889999999966667778999999998 4543322  11  22357789999999977


Q ss_pred             EEecCCCc-ceeEeecccCceeeeEeecccceeeecccc---ccCcceeEEEECCCCceE-EeecCCCcEEEeecCCC
Q 020461          248 VLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVK---GHFGPINALAFNPDGKSF-SSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       248 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~s~d~~~l-at~s~Dg~i~l~~~~~~  320 (326)
                      +++...+. ..+...+...+.+...       ..+....   .....+..++|+|||++| +++..++.|++|+++++
T Consensus       202 ~v~~~~~~~v~v~~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          202 FLAGELSSQIASLKYDTQTGAFTQL-------GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEE-------EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEe-------eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            76543332 2222222212221110       0011110   011358899999999987 56667999999999743

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=2.3e-18  Score=156.38  Aligned_cols=238  Identities=11%  Similarity=0.018  Sum_probs=155.0

Q ss_pred             ccceEEEEEcCCCCeEEEEeC-CCcEEEEEccCCcEEEEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeecc
Q 020461           52 NGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR  129 (326)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (326)
                      ..+|++++|+|||+.|+.++. |++++||++.+++........ ..+....|+++ ++++.......  .....++.+..
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g--~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG--AEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT--SCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCC--CcceEEEEEec
Confidence            557999999999999999887 999999999776654433333 34566677777 55544331000  01112222211


Q ss_pred             CCCCCCCceEEEeccCccceeEEEEecCCc--EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEE
Q 020461          130 DPADQGGESVLILKGPQGRINRAVWGPLNR--TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL  207 (326)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~  207 (326)
                      ..   .+... .+... ..+....|+|+++  .+++++.++ +.+||+.+++......    +..  .++++||||++|+
T Consensus        98 ~~---~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~----~~~--~~~~~spDG~~la  165 (582)
T 3o4h_A           98 SR---PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELAR----LPG--FGFVSDIRGDLIA  165 (582)
T ss_dssp             TS---TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEE----ESS--CEEEEEEETTEEE
T ss_pred             cC---CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeec----CCC--ceEEECCCCCEEE
Confidence            00   01111 22211 2234568888875  344444454 5599998876543221    222  7889999999999


Q ss_pred             EEeCC----CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461          208 TGSLD----KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (326)
Q Consensus       208 s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (326)
                      +++.|    +.|++||+.+++...-..+...+..++|+|+++.++.+.. ++           ...+++|+...++.. .
T Consensus       166 ~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~-~~-----------~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          166 GLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLET-AR-----------EARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             EEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEEC-SS-----------CEEEEEECTTTCCEE-E
T ss_pred             EEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccC-CC-----------eeEEEEEcCCCCcEE-E
Confidence            88887    7899999998886543334456889999999998884322 22           123455555444433 4


Q ss_pred             ccccCcceeEEE--------ECCCCceEEeecCCCcEEEeec
Q 020461          284 VKGHFGPINALA--------FNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       284 ~~~h~~~v~~v~--------~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +.+|...+..++        |+|||..+++++.||+++||.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            566777777777        9999988999999999999987

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=1.1e-17  Score=144.26  Aligned_cols=290  Identities=13%  Similarity=0.082  Sum_probs=166.4

Q ss_pred             eeEEEEccCCCEEEeecCC---CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           13 LTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      +..++|||||++|+.....   ..+.+|++.+++......++......+.|+||+++|+.++.++.|.+||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            6778999999998766543   3677789888876544444333344478999999999999999999999998876555


Q ss_pred             EecCCCcceeeeecCCeEEEEEc----------------Cc-cc--------eeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           90 FNFDSPARSVDFAVGDKLAVITT----------------DP-FM--------ELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      ...+..     +.+....++...                +. .+        .....+..+.+      .+++.. .+..
T Consensus       118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~------~~g~~~-~~~~  185 (396)
T 3c5m_A          118 YTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI------ETGELE-VIHQ  185 (396)
T ss_dssp             EECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET------TTCCEE-EEEE
T ss_pred             Eecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC------CCCcEE-eecc
Confidence            443221     111111111100                00 00        00011111111      112222 2224


Q ss_pred             CccceeEEEEec-CCcEEEEeeCC------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----
Q 020461          145 PQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----  212 (326)
Q Consensus       145 ~~~~i~~~~~~~-~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----  212 (326)
                      +...+..+.|+| ++..|+..+.+      ..|.+||+..++.. .+.. ......+..+.|+|||++|+.++.+     
T Consensus       186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec-cCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            556788899999 78767665543      46888888765432 2221 1113467889999999988877654     


Q ss_pred             CeEEEeecCCcceEEEEeeccceEEEEeCC-CCCeeEEecCCCcceeEeec----ccCceeeeEeecccceeeecccccc
Q 020461          213 KSAKLWDARTLELIKTYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTD----HRAGKFEAKFFDKILQEEIGGVKGH  287 (326)
Q Consensus       213 g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~~~~~~~~~~~~~~h  287 (326)
                      +.|++||+.+++.......+ ... ..++| ++..++.+.....  +...+    ...+...+++|+...++. ..+..|
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p--~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~  338 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAP--VDVADADSYNIENDPFLYVLNTKAKSA-QKLCKH  338 (396)
T ss_dssp             EEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC------------CCCCCCEEEEEETTTTBC-CEEEEC
T ss_pred             ceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcc--eeeccccccccCCCCcEEEEecccCce-EEccCC
Confidence            45999999988654332222 233 78898 8886665432100  00000    000112334444332221 122333


Q ss_pred             Cc-----------ceeEEEECCCCceEEeecC-CCcEEEeecCCCc
Q 020461          288 FG-----------PINALAFNPDGKSFSSGGE-DGYVRLHHFDPDY  321 (326)
Q Consensus       288 ~~-----------~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~~~~  321 (326)
                      ..           .+..++|+|||+.|+.++. ++...||.++.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~  384 (396)
T 3c5m_A          339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE  384 (396)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred             CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence            32           2567899999998876664 6788888877544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=1.1e-17  Score=155.53  Aligned_cols=287  Identities=9%  Similarity=-0.004  Sum_probs=169.7

Q ss_pred             ceeEEEEccCCCEEEeecC---------CCCeEEEecCCCCee--eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 020461           12 PLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~---------d~~v~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd   80 (326)
                      .+.+++|||||++|++++.         ++.|++||+.+++.+  ..+   ...+..++|||||+.|+.+. |+.|++||
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence            3889999999999998876         789999999988763  222   24688899999999998875 78999999


Q ss_pred             ccCCcEEEEEecCC-------------------CcceeeeecCCeEEEEEc-Cc-ccee---------------------
Q 020461           81 VETGAQLFTFNFDS-------------------PARSVDFAVGDKLAVITT-DP-FMEL---------------------  118 (326)
Q Consensus        81 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~-~~~~---------------------  118 (326)
                      +.+++.........                   ....+.|+++++.++... +. ....                     
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            98887643221111                   113678888776555433 21 0000                     


Q ss_pred             ------ceeeeeeeeccCCCCCCCceE--------EEeccCccceeEEEEecCCcEEEEeeCC----CcEEEEE----CC
Q 020461          119 ------NSAIHVKRIARDPADQGGESV--------LILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWD----TE  176 (326)
Q Consensus       119 ------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~s~~~d----~~i~~wd----~~  176 (326)
                            ...+.++++.      ++...        ..+.+|...+..++|+|+++.+++....    ..|.+||    ..
T Consensus       217 ~g~~~~~~~l~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~  290 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTT------YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ  290 (719)
T ss_dssp             TTSCCCEEEEEEEESS------CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred             CCCCCCeeEEEEEECC------CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence                  0011122111      11110        0123567778999999998777764433    2488999    77


Q ss_pred             CCccccccc-cccCcceeeE-----EEEEcCCCCeEEE--EeCCC--eEEEeecCCcceEEEEee-ccceEEEEeCCCCC
Q 020461          177 TGKLLKESD-KETGHKKTIT-----SLAKAADGSHFLT--GSLDK--SAKLWDARTLELIKTYVT-ERPVNAVTMSPLLD  245 (326)
Q Consensus       177 ~~~~~~~~~-~~~~h~~~v~-----~v~~s~~~~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~  245 (326)
                      +++...... ...+|...+.     .+.|+|||+.++.  ...+|  .|.+||+.+++. ..+.. ...+..+.+. +++
T Consensus       291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~  368 (719)
T 1z68_A          291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQD  368 (719)
T ss_dssp             SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSS
T ss_pred             CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCC
Confidence            776543321 0024555555     7899999996654  44555  577788877663 33332 2335555555 666


Q ss_pred             eeEEecCC-----CcceeEeecccCceeeeEeecccceeeec-cccccCcceeEEEECCCCceEEe-ecCC--CcEEEee
Q 020461          246 HVVLGGGQ-----DASAVTTTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKSFSS-GGED--GYVRLHH  316 (326)
Q Consensus       246 ~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~s~d~~~lat-~s~D--g~i~l~~  316 (326)
                      .++..+..     ....+...+...+..        ..+.+. .+.+|...+..+.|+||+++++. ++.+  ..+.+|+
T Consensus       369 ~i~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          369 SLFYSSNEFEEYPGRRNIYRISIGSYPP--------SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD  440 (719)
T ss_dssp             EEEEEESCGGGCTTCBEEEEEECSSSSC--------CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred             EEEEEEecCCCCCceEEEEEEeCCCCCC--------CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence            66655433     111111111100000        011111 13346677889999999988764 4443  3566665


Q ss_pred             cC
Q 020461          317 FD  318 (326)
Q Consensus       317 ~~  318 (326)
                      ..
T Consensus       441 ~~  442 (719)
T 1z68_A          441 GR  442 (719)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=5.8e-16  Score=132.01  Aligned_cols=238  Identities=9%  Similarity=0.048  Sum_probs=143.6

Q ss_pred             CCEEEee----cCCCCeEEEec--CCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC----CcEEEEEccC--CcEEEE
Q 020461           22 GDLLFSC----AKDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVET--GAQLFT   89 (326)
Q Consensus        22 ~~~l~s~----~~d~~v~iw~~--~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~~wd~~~--~~~~~~   89 (326)
                      ..+++.|    +.++.|.+|.+  ++++.......+......++|+|++++|++++.+    +.|.+|++..  ++....
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            3445554    35678899865  5565433222266677889999999999999886    7999998865  322110


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCC
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDA  168 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~  168 (326)
                      .                                                  ....+......+++  +++.+++++ .++
T Consensus        93 ~--------------------------------------------------~~~~~~~~p~~~~~--dg~~l~~~~~~~~  120 (361)
T 3scy_A           93 N--------------------------------------------------TQKTMGADPCYLTT--NGKNIVTANYSGG  120 (361)
T ss_dssp             E--------------------------------------------------EEECSSSCEEEEEE--CSSEEEEEETTTT
T ss_pred             e--------------------------------------------------EeccCCCCcEEEEE--CCCEEEEEECCCC
Confidence            0                                                  00011112333444  566666554 688


Q ss_pred             cEEEEECCCCccccccccc-----------cCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcc-------eE---
Q 020461          169 IVRIWDTETGKLLKESDKE-----------TGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE-------LI---  226 (326)
Q Consensus       169 ~i~~wd~~~~~~~~~~~~~-----------~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~-------~~---  226 (326)
                      .|.+|++.....+......           ..+...+.+++++|+|+++++++ .++.|++|++....       ..   
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            9999999754333222110           01123357899999999776655 48899999887533       21   


Q ss_pred             ----EEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce
Q 020461          227 ----KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS  302 (326)
Q Consensus       227 ----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~  302 (326)
                          ........+..++|+|+++.++++...+. .+..+|...+.+..       ...+.....+......++|+|||++
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~-~v~v~~~~~g~~~~-------~~~~~~~~~~~~~~~~i~~spdg~~  272 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG-TVIAFRYADGMLDE-------IQTVAADTVNAQGSGDIHLSPDGKY  272 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTC-EEEEEEEETTEEEE-------EEEEESCSSCCCCEEEEEECTTSSE
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCC-eEEEEEecCCceEE-------eEEEecCCCCCCCcccEEECCCCCE
Confidence                11223345788999999998777653332 23333333222110       0111222333445689999999998


Q ss_pred             EEeecC--CCcEEEeecCC
Q 020461          303 FSSGGE--DGYVRLHHFDP  319 (326)
Q Consensus       303 lat~s~--Dg~i~l~~~~~  319 (326)
                      |++++.  ++.|++|++++
T Consensus       273 l~v~~~~~~~~i~v~~~~~  291 (361)
T 3scy_A          273 LYASNRLKADGVAIFKVDE  291 (361)
T ss_dssp             EEEEECSSSCEEEEEEECT
T ss_pred             EEEECCCCCCEEEEEEEcC
Confidence            866555  58999999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=1.4e-16  Score=146.79  Aligned_cols=252  Identities=12%  Similarity=0.005  Sum_probs=161.4

Q ss_pred             eeeecCCceeEEEEccCCCEEEee--cCCCCeEEEecCCCCeeeeccCcccceE---------EEEEc--CCCCe-EEEE
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVW---------CCDVS--RDSMT-LITG   70 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~--~~d~~v~iw~~~~~~~~~~~~~h~~~V~---------~~~~~--~~~~~-l~s~   70 (326)
                      .+.+|...+..++|++++-++++.  +.++...||....+.....+..|...+.         ...|+  ||++. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            466788999999999887777777  6788999998655555556666665655         55555  99988 6655


Q ss_pred             eC-CCcEEEEEcc--C-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc
Q 020461           71 SA-DQTAKLWNVE--T-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (326)
Q Consensus        71 ~~-d~~i~~wd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (326)
                      +. +..|.+|++.  + ++.. .+.                                     ...          ...|.
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~-~l~-------------------------------------~~~----------~~~~~  129 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPR-PLT-------------------------------------PVS----------AVGGG  129 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCE-ECS-------------------------------------CCC----------CSTTC
T ss_pred             ECCCCeEEEEcCCCCCCCCCE-ecc-------------------------------------CCc----------cCCCC
Confidence            43 3444444443  1 2211 000                                     000          00133


Q ss_pred             cceeEEEEecCCcEEEEeeCC----------CcEEEEECCC------CccccccccccCcceeeEEEEEcCCCCeEEEEe
Q 020461          147 GRINRAVWGPLNRTIISAGED----------AIVRIWDTET------GKLLKESDKETGHKKTITSLAKAADGSHFLTGS  210 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d----------~~i~~wd~~~------~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s  210 (326)
                      ..+..++|+|+++.|++++.+          ..|.+||+.+      ++.. .+.  ..+...+..++|||||++|+.++
T Consensus       130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~--~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELS--DDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESS--CSCSSEECCCEECTTSSEEEEEE
T ss_pred             ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEE--ecCCCcccCceECCCCCEEEEEE
Confidence            456778999999999988877          5899999987      4432 221  03445778899999999999887


Q ss_pred             CCC--------eEEEeecC-Cc---ceEEEEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc
Q 020461          211 LDK--------SAKLWDAR-TL---ELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL  277 (326)
Q Consensus       211 ~dg--------~i~iwd~~-~~---~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  277 (326)
                      .++        .|++||+. ++   +...-... ...+..+.|+|+++.++++ ..++.           ..++.++...
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~-~~~~~-----------~~l~~~~~~~  274 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT-DRTGW-----------WNLHRVDPAT  274 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE-CTTSS-----------CEEEEECTTT
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE-CCCCC-----------eEEEEEECCC
Confidence            653        79999998 56   33322222 4578899999999844443 33221           1223333212


Q ss_pred             eeeeccccccCcc--------eeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          278 QEEIGGVKGHFGP--------INALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       278 ~~~~~~~~~h~~~--------v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ++......++...        +..++|+|+++++++++. +.++||.++.+
T Consensus       275 ~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~  324 (662)
T 3azo_A          275 GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE  324 (662)
T ss_dssp             CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred             CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence            2111111222211        567999999999999999 99999977654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=1.2e-15  Score=126.39  Aligned_cols=244  Identities=11%  Similarity=0.039  Sum_probs=161.5

Q ss_pred             ceeeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      +..+..+.....+++|+|+++ +++++..++.|.+|+..++  ...+..+...+.+++++++++++++...++.|.+||.
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            355666677788999999998 7888889999999998877  5666677788999999999998777777789999998


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .+++.........                                                ......++.++++|+|+++
T Consensus        98 ~~g~~~~~~~~~~------------------------------------------------~~~~~~~~~i~~d~~G~l~  129 (296)
T 3e5z_A           98 PGGEWESIADSFE------------------------------------------------GKKLNSPNDVCLAPDGSLW  129 (296)
T ss_dssp             TTCCEEEEECEET------------------------------------------------TEECCCCCCEEECTTSCEE
T ss_pred             CCCcEEEEeeccC------------------------------------------------CCCCCCCCCEEECCCCCEE
Confidence            7776432110000                                                0001234567788888877


Q ss_pred             EE----ee-------------CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC-Cc
Q 020461          162 IS----AG-------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TL  223 (326)
Q Consensus       162 ~s----~~-------------~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-~~  223 (326)
                      ++    |.             ..+.|..++.. ++. ..+   ..+......++++|+++.+++.+.++.|++||+. ++
T Consensus       130 vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~---~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g  204 (296)
T 3e5z_A          130 FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAP---IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG  204 (296)
T ss_dssp             EEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEE---ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSS
T ss_pred             EECCccccccccccccccccCCCcEEEEECCC-CCE-EEe---ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCC
Confidence            76    33             12355555544 332 222   2334556889999999988888888999999987 44


Q ss_pred             ce---EEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE-CC
Q 020461          224 EL---IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF-NP  298 (326)
Q Consensus       224 ~~---~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-s~  298 (326)
                      +.   ...+. ....+.++++++++...++.  ..  .+            ..|+.. ++.+..+..+.. +.+++| +|
T Consensus       205 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~--~v------------~~~~~~-g~~~~~~~~~~~-~~~~~f~~~  266 (296)
T 3e5z_A          205 ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD--GV------------HVLTPD-GDELGRVLTPQT-TSNLCFGGP  266 (296)
T ss_dssp             CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT--EE------------EEECTT-SCEEEEEECSSC-CCEEEEEST
T ss_pred             cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC--eE------------EEECCC-CCEEEEEECCCC-ceeEEEECC
Confidence            43   22221 12345678888888644433  21  12            223322 222333444555 899999 69


Q ss_pred             CCceEEeecCCCcEEEeecCCCce
Q 020461          299 DGKSFSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       299 d~~~lat~s~Dg~i~l~~~~~~~~  322 (326)
                      +++.|..++.+   .||+++++..
T Consensus       267 d~~~L~v~t~~---~l~~~~~~~~  287 (296)
T 3e5z_A          267 EGRTLYMTVST---EFWSIETNVR  287 (296)
T ss_dssp             TSCEEEEEETT---EEEEEECSCC
T ss_pred             CCCEEEEEcCC---eEEEEEcccc
Confidence            99988888877   4666665543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=6.5e-16  Score=130.71  Aligned_cols=212  Identities=12%  Similarity=0.066  Sum_probs=140.8

Q ss_pred             ceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCcc------cceEEEEEcCCCCeEEEEeCC-----------
Q 020461           12 PLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDSMTLITGSAD-----------   73 (326)
Q Consensus        12 ~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~------~~V~~~~~~~~~~~l~s~~~d-----------   73 (326)
                      .+..++|+|+++++ +++..++.|.+||..+++.+..+..+.      ..+..++|+|+++++++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            46889999999865 566678999999999998877665322      337889999999999998865           


Q ss_pred             -CcEEEEEccCCcE---EEEEecCCCcceeeeecCCeEEEEEcCccceec--eeeeeeeeccCC-C--------------
Q 020461           74 -QTAKLWNVETGAQ---LFTFNFDSPARSVDFAVGDKLAVITTDPFMELN--SAIHVKRIARDP-A--------------  132 (326)
Q Consensus        74 -~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~--------------  132 (326)
                       +.|.+||+.+++.   +..+.....+.++.+++++.+.+ ........+  .......+.... .              
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP  202 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE-ccCcEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence             8999999988442   23344444456666777766433 322111110  000000000000 0              


Q ss_pred             -CCC------------------------------------C-ceEEEeccCccceeEEEEec-CCcEEEEeeCCCcEEEE
Q 020461          133 -DQG------------------------------------G-ESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW  173 (326)
Q Consensus       133 -~~~------------------------------------~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d~~i~~w  173 (326)
                       ...                                    + ........+...+..+.++| +++.++++  ++.|.+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~  280 (349)
T 1jmx_B          203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY  280 (349)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred             CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence             000                                    0 00000111223456788899 99988887  8899999


Q ss_pred             ECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      |+.+++....+.    ....+.++++++++++|++++.++.|++||+++++.+..+.
T Consensus       281 d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          281 DLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             ETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             ECccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            999887665443    22346789999999999998889999999999998877764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=2.7e-15  Score=127.86  Aligned_cols=258  Identities=11%  Similarity=0.025  Sum_probs=156.7

Q ss_pred             EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCc------ccceEEEEEcCCCCeEEEEeC--CCcE
Q 020461           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMTLITGSA--DQTA   76 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h------~~~V~~~~~~~~~~~l~s~~~--d~~i   76 (326)
                      .++|+|||++|++++          .+++|.+||..+++.+.++...      ......++++||+++|+++..  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999998876          3678999999998888777532      234567899999999998874  6899


Q ss_pred             EEEEccCCcEEEE-EecCCCcceeeeecC--CeEEEEEcCccceeceeeeeeeeccCCCCCCCceE------EEeccCcc
Q 020461           77 KLWNVETGAQLFT-FNFDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESV------LILKGPQG  147 (326)
Q Consensus        77 ~~wd~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  147 (326)
                      .+||+.+++.+.. +..... ..+.+.+.  ..++..+.+.....      ....     ..+...      ..+.....
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~------v~~~-----~~g~~~~~~~~~~~~~~~~~  201 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLT------INLG-----EDGKVASQSRSKQMFSVKDD  201 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEE------EEEC-----TTSSEEEEEECCCCSCTTTS
T ss_pred             EEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEE------EEEC-----CCCcEeeeccccceEcCCCC
Confidence            9999999887665 432211 00111221  12222222111000      0000     000000      00011111


Q ss_pred             ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccc--ccccc------ccC-cceeeEEEEEcCCCCeEEEEeC-------
Q 020461          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDK------ETG-HKKTITSLAKAADGSHFLTGSL-------  211 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~------~~~-h~~~v~~v~~s~~~~~l~s~s~-------  211 (326)
                      ++ .+..+|++..++..+.++.|.++|+...+..  .....      ..+ .......+++++++..++++..       
T Consensus       202 ~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          202 PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             ce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence            11 2233566666676778899999998654321  10000      000 0011123688999888777653       


Q ss_pred             ----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce--eeecccc
Q 020461          212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGGVK  285 (326)
Q Consensus       212 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~  285 (326)
                          .++|.+||+++++.+..+.... +..++++|+++.++++..   ..+.            +|+..+.  +.++.+.
T Consensus       281 ~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~---~~v~------------v~D~~t~~l~~~~~i~  344 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG---GNVN------------VYDISQPEPKLLRTIE  344 (361)
T ss_dssp             TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS---SCEE------------EEECSSSSCEEEEEET
T ss_pred             ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC---CeEE------------EEECCCCcceeeEEec
Confidence                3489999999999999988777 999999999998877653   2233            3444444  4444444


Q ss_pred             ccCcceeEEEECCCCc
Q 020461          286 GHFGPINALAFNPDGK  301 (326)
Q Consensus       286 ~h~~~v~~v~~s~d~~  301 (326)
                      .+....+.++|+|||+
T Consensus       345 ~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          345 GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TSCSSEEEEEECCCSC
T ss_pred             cCCCCcEEEEecCCCC
Confidence            4556678899999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.72  E-value=5.3e-15  Score=126.36  Aligned_cols=230  Identities=8%  Similarity=-0.031  Sum_probs=140.6

Q ss_pred             CCeEEEec--CCCCeee--ecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc-CCcEEEEEecCCCcceeeeecCC
Q 020461           32 HTPTVWFA--DNGERLG--TYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTFNFDSPARSVDFAVGD  105 (326)
Q Consensus        32 ~~v~iw~~--~~~~~~~--~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~  105 (326)
                      +.|.+|++  .+++...  ... +....+..++|+|++++|++++.+ .|.+|++. +++........            
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~------------   80 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP------------   80 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE------------
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee------------
Confidence            45776654  4554422  111 233467789999999999999988 89999986 55432211100            


Q ss_pred             eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE--EEEee-------------CCCcE
Q 020461          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT--IISAG-------------EDAIV  170 (326)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~s~~-------------~d~~i  170 (326)
                                                            .+ +....++++|+++.  ++++.             .++++
T Consensus        81 --------------------------------------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v  121 (365)
T 1jof_A           81 --------------------------------------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             --------------------------------------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             --------------------------------------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence                                                  00 01223567788873  44553             68999


Q ss_pred             EEEECC-CCccccccccc-cCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecC-CcceE--EEEe--e-ccceEEEEeC
Q 020461          171 RIWDTE-TGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDAR-TLELI--KTYV--T-ERPVNAVTMS  241 (326)
Q Consensus       171 ~~wd~~-~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~-~~~~~--~~~~--~-~~~~~~~~~s  241 (326)
                      .+|++. +++....+... ..+...+.+++++|||+++++++. ++.|++||+. +++..  ..+.  . ...+..++|+
T Consensus       122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s  201 (365)
T 1jof_A          122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH  201 (365)
T ss_dssp             EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred             EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence            999996 45543322210 123456889999999998887764 6899999998 66653  2232  1 3458899999


Q ss_pred             CCCCeeEEecCCCc-ceeEeecccCceeeeEeecccceeeecc----ccccCc------ceeEEE-ECCCCceEEeecCC
Q 020461          242 PLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGG----VKGHFG------PINALA-FNPDGKSFSSGGED  309 (326)
Q Consensus       242 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~h~~------~v~~v~-~s~d~~~lat~s~D  309 (326)
                      |+++.++++...+. ..+..+|...+......      ..+..    ..+|..      .+..++ |+|||++|++++.+
T Consensus       202 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTH------HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc------ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            99998877654332 22222232222221100      00111    123433      588999 99999998777653


Q ss_pred             C------cEEEeecCC
Q 020461          310 G------YVRLHHFDP  319 (326)
Q Consensus       310 g------~i~l~~~~~  319 (326)
                      .      +|++|++++
T Consensus       276 ~~~~~~~~i~v~~~~~  291 (365)
T 1jof_A          276 NKFELQGYIAGFKLRD  291 (365)
T ss_dssp             SSTTSCCEEEEEEECT
T ss_pred             CCCCCCCeEEEEEECC
Confidence            3      899999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=1.4e-15  Score=140.12  Aligned_cols=235  Identities=11%  Similarity=-0.023  Sum_probs=147.8

Q ss_pred             EEEEc--cCCCE-EEeecC-CCCeEEEecC--C-CCeeeeccC-----cccceEEEEEcCCCCeEEEEeCC---------
Q 020461           15 YLKYN--KDGDL-LFSCAK-DHTPTVWFAD--N-GERLGTYRG-----HNGAVWCCDVSRDSMTLITGSAD---------   73 (326)
Q Consensus        15 ~~~~s--~~~~~-l~s~~~-d~~v~iw~~~--~-~~~~~~~~~-----h~~~V~~~~~~~~~~~l~s~~~d---------   73 (326)
                      ...|+  |||++ |+.++. +..|.+|+..  . ++ ...+..     |...+..++|+|||+.|+.++.|         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            45555  99998 765554 5566666654  2 33 344444     67788999999999999988876         


Q ss_pred             -CcEEEEEccC------CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-cC
Q 020461           74 -QTAKLWNVET------GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GP  145 (326)
Q Consensus        74 -~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  145 (326)
                       ..|.+||+.+      ++..                                                     .+. .+
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~-----------------------------------------------------~l~~~~  186 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVR-----------------------------------------------------ELSDDA  186 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSE-----------------------------------------------------ESSCSC
T ss_pred             eeEEEEEECCCCccccCCcee-----------------------------------------------------EEEecC
Confidence             4677888765      3221                                                     011 12


Q ss_pred             ccceeEEEEecCCcEEEEeeCC--------CcEEEEECC-CCc--cccccccccCcceeeEEEEEcCCCCeEEEEeCCC-
Q 020461          146 QGRINRAVWGPLNRTIISAGED--------AIVRIWDTE-TGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-  213 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~s~~~d--------~~i~~wd~~-~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-  213 (326)
                      ...+..+.|+|+|+.|+.++.+        ..|.+||+. +++  ....+.  .+|...+..+.|+|||+++++++.++ 
T Consensus       187 ~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          187 HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred             CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcceEECCCCeEEEEECCCCC
Confidence            2345567899999999877755        379999998 562  222221  23467789999999999888888888 


Q ss_pred             -eEEEeecCCcceEEEEeeccc---------eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461          214 -SAKLWDARTLELIKTYVTERP---------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (326)
Q Consensus       214 -~i~iwd~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (326)
                       .|..||..+++..........         +..++++|++..++.+.. ...            .+...+...++ +..
T Consensus       265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~------------~l~~~d~~~~~-~~~  330 (662)
T 3azo_A          265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA------------VLGILDPESGE-LVD  330 (662)
T ss_dssp             CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC------------EEEEEETTTTE-EEE
T ss_pred             eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc------------EEEEEECCCCc-EEE
Confidence             667777766664332222111         345666666655544432 222            22222322222 234


Q ss_pred             ccccCcceeEE-EECCCCceEEeecCCCcEEEeecCC
Q 020461          284 VKGHFGPINAL-AFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       284 ~~~h~~~v~~v-~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +..|.+.+..+ +++++.-.+++++.+....||.++.
T Consensus       331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence            55666778777 6665555677778888778877764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=8.3e-16  Score=143.36  Aligned_cols=248  Identities=8%  Similarity=-0.038  Sum_probs=148.0

Q ss_pred             EEEEccCCCEEEeecCC---------CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461           15 YLKYNKDGDLLFSCAKD---------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~d---------~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      .++|||||++|+.++.+         +.+.+||+.+++.. .+..|.+.+..++|||||+.|+.+ .|+.|.+||+.+++
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence            47899999999998886         45569999998765 466778889999999999999877 46889999998876


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc---------cceeEEEEec
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ---------GRINRAVWGP  156 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~  156 (326)
                      ... +..+.....                                          .+.++.         +....+.|||
T Consensus       144 ~~~-lt~~g~~~~------------------------------------------~~~g~~~~v~~ee~~~~~~~~~wSp  180 (740)
T 4a5s_A          144 SYR-ITWTGKEDI------------------------------------------IYNGITDWVYEEEVFSAYSALWWSP  180 (740)
T ss_dssp             CEE-CCSCCBTTT------------------------------------------EEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             eEE-EcCCCCccc------------------------------------------eecCcccccccchhcCCCcceEECC
Confidence            432 111110000                                          000111         1122356677


Q ss_pred             CCcEEEEeeCCC------------------------------------cEEEEECCC---Ccc--cccccc---ccCcce
Q 020461          157 LNRTIISAGEDA------------------------------------IVRIWDTET---GKL--LKESDK---ETGHKK  192 (326)
Q Consensus       157 ~~~~l~s~~~d~------------------------------------~i~~wd~~~---~~~--~~~~~~---~~~h~~  192 (326)
                      +|+.|+.++.|.                                    +|++||+.+   ++.  ...+..   ..+|..
T Consensus       181 Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~  260 (740)
T 4a5s_A          181 NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH  260 (740)
T ss_dssp             TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE
T ss_pred             CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe
Confidence            766666554221                                    588899987   632  112211   013778


Q ss_pred             eeEEEEEcCCCCeEEEEeC----CCeEEEeecCCcc----eE--EEE---eeccce-----EEEEeCCCCCeeE-EecCC
Q 020461          193 TITSLAKAADGSHFLTGSL----DKSAKLWDARTLE----LI--KTY---VTERPV-----NAVTMSPLLDHVV-LGGGQ  253 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~----dg~i~iwd~~~~~----~~--~~~---~~~~~~-----~~~~~s~~~~~~~-~~~~~  253 (326)
                      .+..++|+|||+.++....    +..|++||+.+++    +.  ..+   .+...+     ....|+|+++.++ .....
T Consensus       261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~  340 (740)
T 4a5s_A          261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE  340 (740)
T ss_dssp             EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred             EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC
Confidence            8999999999997665543    3479999999887    22  222   122222     3678999998876 43322


Q ss_pred             CcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce-EEeecC----CCcEEEeecCCC
Q 020461          254 DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS-FSSGGE----DGYVRLHHFDPD  320 (326)
Q Consensus       254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-lat~s~----Dg~i~l~~~~~~  320 (326)
                      +           +...+++++...++... +......|..+.. +|++. +++++.    -+...||.++.+
T Consensus       341 ~-----------G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~  399 (740)
T 4a5s_A          341 E-----------GYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLI  399 (740)
T ss_dssp             T-----------SCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred             C-----------CceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECC
Confidence            2           22345555543332222 2222334555432 33554 444444    355677766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=4.6e-14  Score=118.81  Aligned_cols=250  Identities=12%  Similarity=0.015  Sum_probs=154.2

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC----CcEEEEEc
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNV   81 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~~wd~   81 (326)
                      +.++...+.+++|+++|++++++..++.|.+|+.++++.......+...+.+++++++++++++...+    +.|.+||.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            45566677899999999988888899999999998887665444566789999999999877777666    67888888


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ++++....+..                                                  ..+...++.+.++|++..+
T Consensus       120 ~~~~~~~~~~~--------------------------------------------------~~~~~~~~~i~~d~~g~l~  149 (333)
T 2dg1_A          120 NGDNLQDIIED--------------------------------------------------LSTAYCIDDMVFDSKGGFY  149 (333)
T ss_dssp             TSCSCEEEECS--------------------------------------------------SSSCCCEEEEEECTTSCEE
T ss_pred             CCCEEEEEEcc--------------------------------------------------CccCCcccceEECCCCCEE
Confidence            76543211100                                                  0012346678889988877


Q ss_pred             EEeeC------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecCC-cceEEEE----
Q 020461          162 ISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDART-LELIKTY----  229 (326)
Q Consensus       162 ~s~~~------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~~-~~~~~~~----  229 (326)
                      ++...      .+.|..+|..+++... +.   .+...+..+++++++..+ ++.+.++.|.+||+++ +..+..+    
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~  225 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPDFRTVTP-II---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  225 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEEE-EE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             EEeccccccCCCceEEEEeCCCCEEEE-ee---cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence            76553      3456666655443322 11   122346789999999865 4555688999999964 3332211    


Q ss_pred             ----eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc-ccccCcceeEEEECCCCceEE
Q 020461          230 ----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDGKSFS  304 (326)
Q Consensus       230 ----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~s~d~~~la  304 (326)
                          .....+..+++++++...+...+..  .+..+|.. +.. ...+.      ... ..+|...+.+++|+||++.|.
T Consensus       226 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~--~v~~~d~~-g~~-~~~~~------~~~~~~g~~~~~~~~~~~~dg~~L~  295 (333)
T 2dg1_A          226 PYYFTGHEGPDSCCIDSDDNLYVAMYGQG--RVLVFNKR-GYP-IGQIL------IPGRDEGHMLRSTHPQFIPGTNQLI  295 (333)
T ss_dssp             EEECCSSSEEEEEEEBTTCCEEEEEETTT--EEEEECTT-SCE-EEEEE------CTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             EEecCCCCCCCceEECCCCCEEEEEcCCC--EEEEECCC-CCE-EEEEE------cCCCccccccCcceEEECCCCCEEE
Confidence                1112567888998876444332222  22233321 111 00000      000 012333689999999987776


Q ss_pred             eecCCC----cEEEeecCC
Q 020461          305 SGGEDG----YVRLHHFDP  319 (326)
Q Consensus       305 t~s~Dg----~i~l~~~~~  319 (326)
                      .++.++    .-.||.++.
T Consensus       296 v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          296 ICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             EEEECGGGTCCEEEEEEEC
T ss_pred             EEeCccCCCCCceEEEEec
Confidence            555553    345665543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=2.5e-14  Score=117.11  Aligned_cols=222  Identities=11%  Similarity=0.093  Sum_probs=153.7

Q ss_pred             cCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcce
Q 020461           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS   98 (326)
Q Consensus        20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~   98 (326)
                      ..+++|++++.|+.|.+||.++|+.+-++..+. ..+..+++.|+|++++  +.++.|..||. +++.+..+....    
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~----   75 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA----   75 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT----
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC----
Confidence            346889999999999999999999998888776 4788999999999888  45678999998 777665443210    


Q ss_pred             eeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC-CCcEEEEECCC
Q 020461           99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTET  177 (326)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d~~i~~wd~~~  177 (326)
                                                                     ...+..+.+.|+++++++.+. ++.|..+|. +
T Consensus        76 -----------------------------------------------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~  107 (276)
T 3no2_A           76 -----------------------------------------------GCEMQTARILPDGNALVAWCGHPSTILEVNM-K  107 (276)
T ss_dssp             -----------------------------------------------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-T
T ss_pred             -----------------------------------------------CccccccEECCCCCEEEEecCCCCEEEEEeC-C
Confidence                                                           012344566778888887776 777777775 5


Q ss_pred             Cccccccccc---cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCC
Q 020461          178 GKLLKESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       178 ~~~~~~~~~~---~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                      ++.+..+...   ..+......++..++|.++++...++.|..||.+ ++.+.++.....+..+...++++.++++....
T Consensus       108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~  186 (276)
T 3no2_A          108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAH  186 (276)
T ss_dssp             SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTS
T ss_pred             CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCC
Confidence            6554443211   1122345566788999999999999999999998 99999987665666778888887766554332


Q ss_pred             cceeEeecccCceeeeEeecccceeeeccccc-cCcceeEEEECCCCceEEee
Q 020461          255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSG  306 (326)
Q Consensus       255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~lat~  306 (326)
                        .+..+|...+....++-..       .+.+ ....+..++..++|..+++.
T Consensus       187 --~v~~~d~~tG~~~w~~~~~-------~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          187 --CFVQLNLESNRIVRRVNAN-------DIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             --EEEEECTTTCCEEEEEEGG-------GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             --eEEEEeCcCCcEEEEecCC-------CCCCccccccccceEcCCCCEEEEe
Confidence              3455565545432222110       0001 12347788888899888776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=3e-14  Score=116.17  Aligned_cols=242  Identities=7%  Similarity=-0.079  Sum_probs=156.0

Q ss_pred             ceeEEEEccCCCEEE-eecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      ...+++++++|++++ +...++.|.+|+..++........+...+.+++++++++++++.. ++.|.+||..+..... +
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence            668999999999887 657889999998765543322223335678899999988665555 8889999876543210 0


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcE
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i  170 (326)
                      .                                                   ......+..++++|++..+++...++.|
T Consensus       103 ~---------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i  131 (270)
T 1rwi_B          103 P---------------------------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRV  131 (270)
T ss_dssp             C---------------------------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEE
T ss_pred             e---------------------------------------------------cCCcCCCcceEECCCCCEEEEECCCCEE
Confidence            0                                                   0011235667888888877777778899


Q ss_pred             EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeEE
Q 020461          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~  249 (326)
                      .+|+..+.......   ......+..++++++|..+++...++.|..||............. ..+.++++++++ .+++
T Consensus       132 ~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v  207 (270)
T 1rwi_B          132 VKLAAGSKTQTVLP---FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYV  207 (270)
T ss_dssp             EEECTTCCSCEECC---CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEE
T ss_pred             EEEECCCceeEeec---cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEE
Confidence            99986544322111   122235778999999987777777899999998876544322222 457889999988 4444


Q ss_pred             ecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461          250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~  323 (326)
                      +...+. .+..+|.....            .......+...+..++++|+|..+++...+++|++++.+.+.+-
T Consensus       208 ~~~~~~-~v~~~~~~~~~------------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          208 TEHNTN-QVVKLLAGSTT------------STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             EETTTS-CEEEECTTCSC------------CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             EECCCC-cEEEEcCCCCc------------ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence            432222 12222321111            00011123356889999999999999999999999998877653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=1.4e-14  Score=134.49  Aligned_cols=246  Identities=12%  Similarity=-0.008  Sum_probs=152.0

Q ss_pred             cCCceeEEEEccCCCEEEeecCCC-----CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCc--------
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDH-----TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT--------   75 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~-----~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~--------   75 (326)
                      |...+..++|||||++|+.++.++     .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            434578899999999998765543     8999999999876533222 23678999999999998887765        


Q ss_pred             --------EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           76 --------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        76 --------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                              |.+|++.+++...                                                ..+.....+..
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~------------------------------------------------~~v~~~~~~~~  233 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSED------------------------------------------------ILCAEFPDEPK  233 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGC------------------------------------------------EEEECCTTCTT
T ss_pred             cccCCCCEEEEEECCCCcccc------------------------------------------------eEEeccCCCCe
Confidence                    6666665443100                                                00000112334


Q ss_pred             ceeEEEEecCCcEEEEeeC-----CCcEEEEECCC------Cc-cccccccccCcceeeEEEEEcCCCCeEEEEeCC---
Q 020461          148 RINRAVWGPLNRTIISAGE-----DAIVRIWDTET------GK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLD---  212 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~------~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d---  212 (326)
                      .+..+.|+|++++|+..+.     +..|.+||+.+      ++ ....+.   .+...+.. .++++|..|+..+.+   
T Consensus       234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~~  309 (710)
T 2xdw_A          234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEYD-YVTNEGTVFTFKTNRHSP  309 (710)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred             EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEEE-EEeccCCEEEEEECCCCC
Confidence            4567889999998887654     56899999976      42 222222   23333333 477888887766653   


Q ss_pred             -CeEEEeecCCcc--eEEEEeec---cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc
Q 020461          213 -KSAKLWDARTLE--LIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG  286 (326)
Q Consensus       213 -g~i~iwd~~~~~--~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  286 (326)
                       +.|.+||+.+++  ..+.+...   ..+..+++++. +.++++...++           ...++.++...+.....+..
T Consensus       310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~~~g-----------~~~l~~~~~~~g~~~~~l~~  377 (710)
T 2xdw_A          310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-NFLVLCYLHDV-----------KNTLQLHDLATGALLKIFPL  377 (710)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT-TEEEEEEEETT-----------EEEEEEEETTTCCEEEEECC
T ss_pred             CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC-CEEEEEEEECC-----------EEEEEEEECCCCCEEEecCC
Confidence             369999998764  23344332   24667777753 44444433332           12334444322333334455


Q ss_pred             cCcceeEEEECCCCceEEee----cCCCcEEEeecCC
Q 020461          287 HFGPINALAFNPDGKSFSSG----GEDGYVRLHHFDP  319 (326)
Q Consensus       287 h~~~v~~v~~s~d~~~lat~----s~Dg~i~l~~~~~  319 (326)
                      +.+.|..++++|++..++..    ...++|.+|++..
T Consensus       378 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          378 EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            67788999999998765422    2356788877654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=3.4e-14  Score=119.66  Aligned_cols=246  Identities=10%  Similarity=-0.001  Sum_probs=163.7

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      ..+.++.|++++..++..+.++.++.|   .++....+..+...+.+++|++++++++++..++.|.+||.++++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            347788999999888888889999999   45566667777777899999999997778888999999998776532110


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC---
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED---  167 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---  167 (326)
                                                                          ..+...+..++++|+++++++...+   
T Consensus        83 ----------------------------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~  110 (333)
T 2dg1_A           83 ----------------------------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKS  110 (333)
T ss_dssp             ----------------------------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred             ----------------------------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence                                                                0112356778899999877777666   


Q ss_pred             -CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC------CCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461          168 -AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTYVTERPVNAVTM  240 (326)
Q Consensus       168 -~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (326)
                       +.|.+||..+++....+. ...+...+..++++++|..+++...      .+.|..+|.++++..........++.+++
T Consensus       111 ~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          111 TGGIFAATENGDNLQDIIE-DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             CCEEEEECTTSCSCEEEEC-SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEEc-cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence             689999988765432221 1123456889999999987777654      35677777766554333233345788999


Q ss_pred             CCCCCeeEEecCCCcceeEeecccC-ceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRA-GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      +|+++.++++...+. .+..+|... +.. ...+.   ......+.++ ..+..++++++|.++++...++.|.+|+.+
T Consensus       190 ~~dg~~l~v~~~~~~-~i~~~d~~~~g~~-~~~~~---~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          190 STDEKVLWVTETTAN-RLHRIALEDDGVT-IQPFG---ATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             CTTSSEEEEEEGGGT-EEEEEEECTTSSS-EEEEE---EEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCCCEEEEEeCCCC-eEEEEEecCCCcC-ccccc---ceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            999987766543222 233333321 110 00000   0001111222 357889999999998888888999998764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=4.2e-15  Score=127.80  Aligned_cols=240  Identities=11%  Similarity=0.026  Sum_probs=148.6

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEE--EcCCCCeEEEE-------------
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD--VSRDSMTLITG-------------   70 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~--~~~~~~~l~s~-------------   70 (326)
                      ..+|...+..+.|||||++|+.++.++.+++||+.+++....+..+.+.+....  +++++++++..             
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~  155 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW  155 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccccc
Confidence            344555555678999999999999999999999999987766666666554443  48899887642             


Q ss_pred             ---------eCCCcEEEEEccCCcEEEEEecCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE
Q 020461           71 ---------SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL  140 (326)
Q Consensus        71 ---------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (326)
                               +.+..|.+||+.+++...............+++ +...++........ .....++.+...     +....
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~-~~~~~l~~~d~~-----~~~~~  229 (388)
T 3pe7_A          156 KKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHD-LVDARMWLINED-----GTNMR  229 (388)
T ss_dssp             HHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTT-TSSCSEEEEETT-----SCCCE
T ss_pred             chhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCC-CCcceEEEEeCC-----CCceE
Confidence                     345679999999987765555555566778888 66544433321000 001111211110     11222


Q ss_pred             EeccCc--cceeEEEEecCCcEEEEeeC-CC----cEEEEECCCCccccccccccCccee---eEEEEEcCCCCeEEEE-
Q 020461          141 ILKGPQ--GRINRAVWGPLNRTIISAGE-DA----IVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTG-  209 (326)
Q Consensus       141 ~~~~~~--~~i~~~~~~~~~~~l~s~~~-d~----~i~~wd~~~~~~~~~~~~~~~h~~~---v~~v~~s~~~~~l~s~-  209 (326)
                      .+..+.  ..+....|+|+++.|+..+. ++    .|.+||+.+++... +....++...   .....|+|||+.|+.. 
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred             EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence            233333  25778899999997755433 22    39999998876422 1111121111   1224789999988754 


Q ss_pred             --------eCCCeEEEeecCCcceEEEEeecc-----------ceEEEEeCCCCCeeEEecC
Q 020461          210 --------SLDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       210 --------s~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~~~~~~  252 (326)
                              ..+..|++||+.+++...-.....           .+..++|+|+++.++.++.
T Consensus       309 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          309 QDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             --------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             eeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence                    456789999999877543323333           3677899999988876643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.65  E-value=1.8e-13  Score=116.60  Aligned_cols=281  Identities=13%  Similarity=0.092  Sum_probs=171.5

Q ss_pred             cCCCEEEeec------CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEccC
Q 020461           20 KDGDLLFSCA------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVET   83 (326)
Q Consensus        20 ~~~~~l~s~~------~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~   83 (326)
                      +++++++.+.      .|+.|.+||.++++.+.++..+..+  .++|+||++++++++          .+++|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            4566666543      4789999999999998888877666  899999999999886          367899999999


Q ss_pred             CcEEEEEecC-------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEEEEe
Q 020461           84 GAQLFTFNFD-------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWG  155 (326)
Q Consensus        84 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~  155 (326)
                      .+.+..+...       .....+.++++.+.++++...   ....+.++++.      .++.+.. +...  ....+.+.
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---~~~~v~v~d~~------~~~~~~~~i~~~--~~~~v~~~  159 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---PATSIGIVDVA------KGDYVEDVTAAA--GCWSVIPQ  159 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES---SSEEEEEEETT------TTEEEEEEGGGT--TEEEEEEC
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC---CCCeEEEEECC------CCcEEEEEecCC--CcceeEEc
Confidence            8887766532       234566778777666554311   01223333222      1222332 2211  11124456


Q ss_pred             cCC-cEEEEeeCCCcEEEEECCC-Cccccccc---cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEE
Q 020461          156 PLN-RTIISAGEDAIVRIWDTET-GKLLKESD---KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKT  228 (326)
Q Consensus       156 ~~~-~~l~s~~~d~~i~~wd~~~-~~~~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~  228 (326)
                      |++ ..+++.+.||.+.+|+... ++......   .......+ ..+..++++..++..+.++.+.++|+.....  +..
T Consensus       160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~  238 (361)
T 2oiz_A          160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP  238 (361)
T ss_dssp             TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred             CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence            665 5777888999999998854 43321100   00011111 2333467777788888899999999875432  222


Q ss_pred             Eeec-----------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461          229 YVTE-----------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (326)
Q Consensus       229 ~~~~-----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  297 (326)
                      +...           .....++++|+++.++++...++..   .........+..|+..+.+.+..+..+.  +..++|+
T Consensus       239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~---~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~s  313 (361)
T 2oiz_A          239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE---GTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTID  313 (361)
T ss_dssp             EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT---TCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEE
T ss_pred             ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc---ccccCCCceEEEEECCCCcEEEEEecCC--eeEEEEC
Confidence            2110           0112367888888877653200000   0000011234556666666666666665  8999999


Q ss_pred             CCCceEEeecCCCcEEEeecCCC
Q 020461          298 PDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       298 ~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      |||++|++++. ++|.+|+....
T Consensus       314 pdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          314 QQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             TTTTEEEEECS-SCEEEEECSSS
T ss_pred             CCCCEEEEeCC-CeEEEEECCCC
Confidence            99999998887 99999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.65  E-value=6.3e-14  Score=118.61  Aligned_cols=227  Identities=14%  Similarity=0.080  Sum_probs=138.6

Q ss_pred             CceeEEEEccCCCEEEeec---------CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC---Cc--E
Q 020461           11 RPLTYLKYNKDGDLLFSCA---------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QT--A   76 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~---------~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d---~~--i   76 (326)
                      ..+...++  ||++++...         .++.|.+|++.+++... +    ..+..+.|+|||++|+.++.+   +.  |
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            34667777  898877642         26778999998887543 3    567889999999998877754   33  6


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      .+||+.+++.........                                                      +..+.|+|
T Consensus        88 ~~~~~~~g~~~~l~~~~~------------------------------------------------------~~~~~wsp  113 (347)
T 2gop_A           88 WVADLETLSSKKILEAKN------------------------------------------------------IRSLEWNE  113 (347)
T ss_dssp             EEEETTTTEEEEEEEESE------------------------------------------------------EEEEEECT
T ss_pred             EEEECCCCceEEEEcCCC------------------------------------------------------ccceeECC
Confidence            666776665433222221                                                      33344555


Q ss_pred             CCcEEEEeeC---------------------------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEE
Q 020461          157 LNRTIISAGE---------------------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG  209 (326)
Q Consensus       157 ~~~~l~s~~~---------------------------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~  209 (326)
                      +++.|+.++.                           ...|.+||+.+++.+..+..    . .+..++|+||| .++++
T Consensus       114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEETTE-EEEEE
T ss_pred             CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C-CcccccCCCCe-EEEEE
Confidence            5554444432                           35699999988765333321    2 57789999999 77777


Q ss_pred             eCCC-------eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461          210 SLDK-------SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG  282 (326)
Q Consensus       210 s~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  282 (326)
                      +.++       ...+|.+.+++. ..+.......  .++|+++.++..+..+..      .......+..++  .++...
T Consensus       188 ~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~~~~~--~~spdg~~l~~~~~~~~~------~~~~~~~l~~~d--~~~~~~  256 (347)
T 2gop_A          188 PHREIIPQYFKFWDIYIWEDGKE-EKMFEKVSFY--AVDSDGERILLYGKPEKK------YMSEHNKLYIYD--GKEVMG  256 (347)
T ss_dssp             ECCCSSCCSSCCEEEEEEETTEE-EEEEEEESEE--EEEECSSCEEEEECCSSS------CCCSSCEEEEEC--SSCEEE
T ss_pred             ecccccccccccccEEEeCCCce-EEeccCccee--eECCCCCEEEEEEccccC------CccccceEEEEC--CCceEe
Confidence            6542       344554444443 3332222233  338898887765433210      000112334444  222222


Q ss_pred             cccccCcceeE-EEECCCCceEEeecCCCcEEEeecC
Q 020461          283 GVKGHFGPINA-LAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       283 ~~~~h~~~v~~-v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      ...+|...+.. +.|+ |+ .+++++.|+.++|| ++
T Consensus       257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            33456677886 9999 88 89999999999999 87

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=1.8e-14  Score=133.40  Aligned_cols=243  Identities=12%  Similarity=-0.065  Sum_probs=148.4

Q ss_pred             ecCCceeEEEEccCCCEEE-----eecCCCCeEEEecCCCCeeeeccCcccce--EEEEEcCCCCeEEEEeCCCc-----
Q 020461            8 GHERPLTYLKYNKDGDLLF-----SCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSADQT-----   75 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~-----s~~~d~~v~iw~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~l~s~~~d~~-----   75 (326)
                      +|...+..++|||||++||     +|+.+..|++||+.+++.+.  ..+...+  ..++|+||++.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4555688999999999998     56667899999999998651  1122222  67899999999999998876     


Q ss_pred             --------EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           76 --------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        76 --------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                              |++|++.+++...                                                ..+.....+..
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~------------------------------------------------~lv~~~~~~~~  227 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKD------------------------------------------------TVVHERTGDPT  227 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGC------------------------------------------------EEEECCCCCTT
T ss_pred             ccCCCCCEEEEEECCCCchhc------------------------------------------------eEEEecCCCCE
Confidence                    8888876653100                                                00001112334


Q ss_pred             ceeEEEEecCCcEEEEeeCCC----cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---CCCeEEEeec
Q 020461          148 RINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDA  220 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s---~dg~i~iwd~  220 (326)
                      .+..+.|+|+|++|+..+.++    .|.+||..+++.. .+.   .+...+....+ ++|..++...   .++.|.+||+
T Consensus       228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~---~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~  302 (695)
T 2bkl_A          228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV---KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDP  302 (695)
T ss_dssp             CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE---ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBT
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee---cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeC
Confidence            566788999999888777665    6777766554432 221   23333444445 5555444444   2588999999


Q ss_pred             CCcce--EEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccccc-CcceeEE
Q 020461          221 RTLEL--IKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINAL  294 (326)
Q Consensus       221 ~~~~~--~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v  294 (326)
                      .+++.  ...+..   ...+..++++  ++.++++...++.           ..++.++.. +.....+..+ .+.|..+
T Consensus       303 ~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~-----------~~l~~~~~~-g~~~~~l~~~~~~~v~~~  368 (695)
T 2bkl_A          303 AKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDAT-----------SEVRVATLK-GKPVRTVQLPGVGAASNL  368 (695)
T ss_dssp             TBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTE-----------EEEEEEETT-CCEEEECCCSSSSEECCC
T ss_pred             CCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCE-----------EEEEEEeCC-CCeeEEecCCCCeEEEEe
Confidence            87653  233332   2245666665  3445544333321           122333321 1122223333 5678889


Q ss_pred             EECCCCceEE----eecCCCcEEEeecCC
Q 020461          295 AFNPDGKSFS----SGGEDGYVRLHHFDP  319 (326)
Q Consensus       295 ~~s~d~~~la----t~s~Dg~i~l~~~~~  319 (326)
                      +++||++.++    +....++|.+|++..
T Consensus       369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          369 MGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             BSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             ecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            9999998776    334467888888764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=9.3e-13  Score=110.67  Aligned_cols=239  Identities=15%  Similarity=0.019  Sum_probs=157.5

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      ....+.++ +++++++...++.|.+||.++++.+.++.. ......++++++++..++...++.|.+||+.+++....+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            34667764 456667777789999999999999888853 4567888998888544444489999999998877554332


Q ss_pred             cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcE
Q 020461           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIV  170 (326)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i  170 (326)
                      ....                                               .+.......+++ ..+..+++.. .+++|
T Consensus       123 ~g~~-----------------------------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A          123 CPDM-----------------------------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRI  154 (328)
T ss_dssp             CTTC-----------------------------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred             cCCc-----------------------------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence            1100                                               000001122333 2233344443 48899


Q ss_pred             EEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC----------CeEEEeecCCcceEEEEee--ccceEEE
Q 020461          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----------KSAKLWDARTLELIKTYVT--ERPVNAV  238 (326)
Q Consensus       171 ~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~--~~~~~~~  238 (326)
                      .+||+.+++....+..    ......+.++++|++++++..+          +.|.++|.++++.+..+..  ...++.+
T Consensus       155 ~viD~~t~~~~~~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l  230 (328)
T 3dsm_A          155 LKIDTETDKVVDELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV  230 (328)
T ss_dssp             EEEETTTTEEEEEEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred             EEEECCCCeEEEEEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence            9999998877655432    1235678899999877777655          7899999999988777654  3368999


Q ss_pred             EeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC-CCceEEee----cCCCcEE
Q 020461          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKSFSSG----GEDGYVR  313 (326)
Q Consensus       239 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~lat~----s~Dg~i~  313 (326)
                      +++|+++.++++..    .+..+|...+....          ...+..+......++++| ++..+++.    ..+++|.
T Consensus       231 a~~~d~~~lyv~~~----~v~~~d~~t~~~~~----------~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~  296 (328)
T 3dsm_A          231 QLNGTRDTLYWINN----DIWRMPVEADRVPV----------RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVY  296 (328)
T ss_dssp             EECTTSCEEEEESS----SEEEEETTCSSCCS----------SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred             EEecCCCEEEEEcc----EEEEEECCCCceee----------eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence            99999998887643    33344443322110          000111134678999999 56666776    6789999


Q ss_pred             EeecC
Q 020461          314 LHHFD  318 (326)
Q Consensus       314 l~~~~  318 (326)
                      +|+.+
T Consensus       297 v~d~~  301 (328)
T 3dsm_A          297 RYSPQ  301 (328)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            98776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=5.9e-12  Score=112.91  Aligned_cols=290  Identities=12%  Similarity=0.075  Sum_probs=170.9

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecC--CCCeeeeccCcccceEEEEEc----CCCCeEEEEe-CCCcEEEEEccCC
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVS----RDSMTLITGS-ADQTAKLWNVETG   84 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~--~~~~~~~~~~h~~~V~~~~~~----~~~~~l~s~~-~d~~i~~wd~~~~   84 (326)
                      .+..+.|||||+++++++.|+.|.+||+.  +++.+.++..... -..++|+    |||+++++++ .+++|.++|..+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            45789999999999999999999999995  7888877765443 4678999    6999888777 4599999999998


Q ss_pred             cEEEEEecCC------------CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461           85 AQLFTFNFDS------------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (326)
Q Consensus        85 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (326)
                      +.+..+....            .+..+..++.....++.....    ..+.+.....    .....+..+ .........
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~----g~v~~vd~~~----~~~~~v~~i-~~~~~~~d~  347 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET----GKILLVDYTD----LNNLKTTEI-SAERFLHDG  347 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT----TEEEEEETTC----SSEEEEEEE-ECCSSEEEE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC----CeEEEEecCC----Cccceeeee-eccccccCc
Confidence            8877654321            111222222222111111100    0111111000    000011111 112345567


Q ss_pred             EEecCCcEEEEee-CCCcEEEEECCCCcccccccc--ccCcceeeEEEEEcCCCCeE-EEEe-CCCeEEEeecCC-----
Q 020461          153 VWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHF-LTGS-LDKSAKLWDART-----  222 (326)
Q Consensus       153 ~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~--~~~h~~~v~~v~~s~~~~~l-~s~s-~dg~i~iwd~~~-----  222 (326)
                      .|+|++++++++. .++.|.++|+.+++....+..  ...|......+ ++|++..+ +++. .+++|.++|..+     
T Consensus       348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~  426 (567)
T 1qks_A          348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD  426 (567)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred             eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence            8999999876654 588999999999887655432  12343222222 57774444 4443 468999999987     


Q ss_pred             --cceEEEEeeccc-eEEEEeCCCCCeeEEecC--CC---cceeEeecccCcee---eeEeecccceeeec---cccccC
Q 020461          223 --LELIKTYVTERP-VNAVTMSPLLDHVVLGGG--QD---ASAVTTTDHRAGKF---EAKFFDKILQEEIG---GVKGHF  288 (326)
Q Consensus       223 --~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~--~~---~~~~~~~d~~~~~~---~~~~~~~~~~~~~~---~~~~h~  288 (326)
                        .+.++++..... ...+..+|++..+++...  .+   ...+..+|......   .. .+..   .++.   .+..-.
T Consensus       427 ~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~-~~~~---~~~~~~~~~~~~~  502 (567)
T 1qks_A          427 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP-EFKT---LPIAEWAGITEGQ  502 (567)
T ss_dssp             TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC-CEEE---ECHHHHHTCCSSC
T ss_pred             ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC-CcEE---eccccccccCCCC
Confidence              567777765432 245778999999887642  12   22344444332200   00 0000   0001   111112


Q ss_pred             cceeEEEECCCCceEEeec-----CCCcEEEee
Q 020461          289 GPINALAFNPDGKSFSSGG-----EDGYVRLHH  316 (326)
Q Consensus       289 ~~v~~v~~s~d~~~lat~s-----~Dg~i~l~~  316 (326)
                      ..+..+.|+|+|+.+..+.     .++.|.+.+
T Consensus       503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             cceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            4688999999999865543     378898844

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=8e-13  Score=111.77  Aligned_cols=210  Identities=10%  Similarity=0.010  Sum_probs=133.8

Q ss_pred             CceeEEEEccCCCEEEeecCC---C--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC------------
Q 020461           11 RPLTYLKYNKDGDLLFSCAKD---H--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD------------   73 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d---~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d------------   73 (326)
                      ..+..++|||||++|+.++.+   +  .|.+|++.+++....... .. +..++|+||++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            346789999999999887754   2  377778888776544433 33 9999999999988877642            


Q ss_pred             ---------------CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCcccee-ce-eeeeeeeccCCCCCCC
Q 020461           74 ---------------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-NS-AIHVKRIARDPADQGG  136 (326)
Q Consensus        74 ---------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~  136 (326)
                                     ..|.+||+.+++.+..+..+ ....+.++++. +++......... .. ...++.+.      ++
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d------~~  208 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE------DG  208 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE------TT
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC------CC
Confidence                           56889999888763333323 56677788777 554442210000 00 11222221      12


Q ss_pred             ceEEEeccCccceeEEEEecCCcEEEEeeCC--------CcEEEEECCCCccccccccccCcceeeEE-EEEcCCCCeEE
Q 020461          137 ESVLILKGPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITS-LAKAADGSHFL  207 (326)
Q Consensus       137 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~~~l~  207 (326)
                      +. ..+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++... +  ..+|...+.. +.|+ ++ .++
T Consensus       209 ~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l--~~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          209 KE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-I--LDEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             EE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE-S--STTCCSEEEEEEEET-TE-EEE
T ss_pred             ce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe-c--cccCCcccCCccEEc-Cc-EEE
Confidence            22 222223 344443  9999988777654        3677888  444322 2  1245667776 8999 88 899


Q ss_pred             EEeCCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461          208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       208 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~  242 (326)
                      +++.++.+++| +.+++..........+..++++|
T Consensus       278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred             EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence            99999999999 87666544333455688888988

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=6.9e-11  Score=97.45  Aligned_cols=273  Identities=10%  Similarity=0.078  Sum_probs=167.2

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCC
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~   84 (326)
                      +..+...+.+++++++|+++++...++.|.+|+.. ++... ....+...+..+++++++++.++...++.|..||.+ +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            34455678999999999988887778899999987 55432 223345678999999999887777778889999986 3


Q ss_pred             cEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCce-EEEeccCccceeEEEEecCCcE
Q 020461           85 AQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        85 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      +. ..+...   .....+.+.+++.+.+.....     ..+....    .   .+.. ..........+..+++++++..
T Consensus        88 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d----~---~g~~~~~~~~~~~~~~~~i~~~~~g~l  154 (299)
T 2z2n_A           88 II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRIT----D---DGKIREYELPNKGSYPSFITLGSDNAL  154 (299)
T ss_dssp             CE-EEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEEC----T---TCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred             cE-EEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEEC----C---CCCEEEecCCCCCCCCceEEEcCCCCE
Confidence            32 223221   223344455555554443211     0111111    1   1111 1122233456788999999988


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cceEE
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVNA  237 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~  237 (326)
                      +++...++.|..||. +++... +. .......+..++++++|...++...++.|..||. +++.. .+...   ..+.+
T Consensus       155 ~v~~~~~~~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~  229 (299)
T 2z2n_A          155 WFTENQNNAIGRITE-SGDITE-FK-IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHA  229 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEE
T ss_pred             EEEeCCCCEEEEEcC-CCcEEE-ee-CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCcee
Confidence            777777889999998 555432 11 1123455789999999987777777889999999 66543 33222   45788


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                      +++++++. ++++...+. .+..+|. .+.+  ..+.         ...+...+.++++ ++|.++++.+.++.++
T Consensus       230 i~~~~~g~-l~v~~~~~~-~i~~~d~-~g~~--~~~~---------~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          230 ITAGAGID-LWFTEWGAN-KIGRLTS-NNII--EEYP---------IQIKSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             EEECSTTC-EEEEETTTT-EEEEEET-TTEE--EEEE---------CSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             EEECCCCC-EEEeccCCc-eEEEECC-CCce--EEEe---------CCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence            99999876 444432211 2223332 1111  1110         1233456899999 9998887766443333

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=5.8e-12  Score=104.85  Aligned_cols=246  Identities=11%  Similarity=0.101  Sum_probs=149.1

Q ss_pred             eeeecCCceeEEEEccCCCEEEe-------ecCCCCeEEEecCCCCeeeecc----CcccceEEEEEcCC-CCeEEEEeC
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFS-------CAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRD-SMTLITGSA   72 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s-------~~~d~~v~iw~~~~~~~~~~~~----~h~~~V~~~~~~~~-~~~l~s~~~   72 (326)
                      .+........+++|+++++++++       ...++.|.+|+..+++......    ++...+.+++++++ ++++++ +.
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~   90 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DM   90 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ET
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-EC
Confidence            33444556789999999998888       6778899999988877643221    25567889999998 664444 44


Q ss_pred             CCcEEEEEccCCcEEEE-EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           73 DQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        73 d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      ...|.+||.+ ++.... ....                                         .       ..+...+..
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~-----------------------------------------~-------~~~~~~~~~  121 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDS-----------------------------------------E-------GRRMQGCND  121 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCT-----------------------------------------T-------SCBCBCCCE
T ss_pred             CCCEEEEeCC-CCEEEEEeccC-----------------------------------------C-------CccccCCcC
Confidence            4468888887 543211 0000                                         0       001134566


Q ss_pred             EEEecCCcEEEEeeCC---------------CcEEEEECCCCccccccccccCcceeeEEEEEc----CCCCeEEE-EeC
Q 020461          152 AVWGPLNRTIISAGED---------------AIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLT-GSL  211 (326)
Q Consensus       152 ~~~~~~~~~l~s~~~d---------------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~~~l~s-~s~  211 (326)
                      ++++|++..+++...+               +.|..||.. ++.....    .+......++++    +++..+.. ...
T Consensus       122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----~~~~~~~~i~~~~~~d~dg~~l~v~~~~  196 (314)
T 1pjx_A          122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD----TAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE----EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec----cCCCCcceEEEecccCCCCCEEEEEECC
Confidence            7888888777666554               567777765 4332211    122345778889    99876554 456


Q ss_pred             CCeEEEeecC-Ccce-----EEEEeec--cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461          212 DKSAKLWDAR-TLEL-----IKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (326)
Q Consensus       212 dg~i~iwd~~-~~~~-----~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (326)
                      ++.|.+||.+ +++.     ...+...  ..+..+++++++...+...+..  .+..+|...            ++.+..
T Consensus       197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~--~i~~~d~~~------------g~~~~~  262 (314)
T 1pjx_A          197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS--HIEVFGPDG------------GQPKMR  262 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT--EEEEECTTC------------BSCSEE
T ss_pred             CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC--EEEEEcCCC------------CcEeEE
Confidence            8899999986 3432     1111111  3467888898875444432222  122233221            111222


Q ss_pred             ccccCcceeEEEECCCCc-eEEeecCCCcEEEeecCC
Q 020461          284 VKGHFGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~  319 (326)
                      +..+...+.+++|+|+|+ ++++...++.|..|+.+.
T Consensus       263 ~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          263 IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            233446789999999999 556666678888877664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.58  E-value=8.9e-14  Score=119.66  Aligned_cols=225  Identities=11%  Similarity=-0.014  Sum_probs=139.7

Q ss_pred             EEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEE-------------------EEEcCCCCeEEEE-----
Q 020461           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-------------------CDVSRDSMTLITG-----   70 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~-------------------~~~~~~~~~l~s~-----   70 (326)
                      .+.|||||++|+.++.++.+++|++.+++....+..+.+....                   ++|+|+++.++.+     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            3789999999999999999999999988766555544443222                   3467777766544     


Q ss_pred             eCCCcEEEEEccCCcEEEEEecCCCcceeeeec-CCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC--c
Q 020461           71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--Q  146 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  146 (326)
                      ..+..|.+||+.+++.............+.+++ ++. ++.+...........+......      ++. ...+..+  .
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------~~~-~~~l~~~~~~  237 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED------GSN-VRKIKEHAEG  237 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT------SCC-CEESSCCCTT
T ss_pred             CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC------CCc-eeEeeccCCC
Confidence            456789999999887765555455566677887 444 4443322110000111111110      111 1222222  2


Q ss_pred             cceeEEEEecCCcEEEEeeCC-----CcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEEe----------
Q 020461          147 GRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS----------  210 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~s----------  210 (326)
                      ..+..+.|+|+++.|+.++.+     +.|.+||+.+++.... ....+    .. +.|+| ||.++++++          
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECCS----EE-EEEECSSSSEEEEEECCC-------
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCCC----CC-CCccCCCCceEEEecCCcceeeccc
Confidence            357788999999987766544     4499999987764321 11111    22 78999 999888765          


Q ss_pred             ------CCCeEEEeecCCcceEEEEeecc-----------ceEEEEeCCCCCeeEEecC
Q 020461          211 ------LDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       211 ------~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~~~~~~  252 (326)
                            .+..|++||+.+++...-.....           .....+|+|+++.++.+..
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence                  34789999998876533222222           1455789999988776543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.57  E-value=6.3e-13  Score=123.09  Aligned_cols=236  Identities=10%  Similarity=0.047  Sum_probs=144.8

Q ss_pred             ccCCCEEEeecCCC---CeEEEec--CCCCeeeec------cCcccceEEEEEcCCCCeEE-----EEeCCCcEEEEEcc
Q 020461           19 NKDGDLLFSCAKDH---TPTVWFA--DNGERLGTY------RGHNGAVWCCDVSRDSMTLI-----TGSADQTAKLWNVE   82 (326)
Q Consensus        19 s~~~~~l~s~~~d~---~v~iw~~--~~~~~~~~~------~~h~~~V~~~~~~~~~~~l~-----s~~~d~~i~~wd~~   82 (326)
                      +|+|++++-...++   .-.||..  ..++....+      .+|...+..++|||||++|+     +|+.+.+|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            48898877665543   3456643  344322222      24666789999999999887     45556789999998


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      +++.+.    ...                                              +..  .....++|+|+++.|+
T Consensus       156 tg~~~~----~~~----------------------------------------------~~~--~~~~~~~wspDg~~l~  183 (695)
T 2bkl_A          156 SGEWSK----VDV----------------------------------------------IEG--GKYATPKWTPDSKGFY  183 (695)
T ss_dssp             TCCBCS----SCC----------------------------------------------BSC--CTTCCCEECTTSSEEE
T ss_pred             CCCCcC----Ccc----------------------------------------------cCc--ccccceEEecCCCEEE
Confidence            875310    000                                              000  0013467999999999


Q ss_pred             EeeCCCc-------------EEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeEEEEeCCC----eEEEeecCCcc
Q 020461          163 SAGEDAI-------------VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLE  224 (326)
Q Consensus       163 s~~~d~~-------------i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg----~i~iwd~~~~~  224 (326)
                      .++.|..             |++|++.+++... .+....+|...+..+.++|||++|+.++.++    .|++||..+++
T Consensus       184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred             EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence            8888776             9999998776321 1222234556788999999999999888766    67778766554


Q ss_pred             eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee--ecccccc--CcceeEEEECCCC
Q 020461          225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE--IGGVKGH--FGPINALAFNPDG  300 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~h--~~~v~~v~~s~d~  300 (326)
                      ...-...........+ ++++ +++....+.          ....+..++...+..  ...+..|  ...+..++|+ ++
T Consensus       264 ~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~----------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~  330 (695)
T 2bkl_A          264 FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGA----------PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG  330 (695)
T ss_dssp             CEEEEECSSCCEEEEE-ETTE-EEEEECTTC----------TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred             eEEeecCCCceEEEEe-cCCc-EEEEECCCC----------CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence            4332222333334444 5555 544432211          112333344322211  1112222  3457889998 78


Q ss_pred             ceEEeecCCCcEEEeecCC
Q 020461          301 KSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       301 ~~lat~s~Dg~i~l~~~~~  319 (326)
                      .++++...|+..+||.++.
T Consensus       331 ~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          331 HLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             EEEEEEEETTEEEEEEEET
T ss_pred             EEEEEEEECCEEEEEEEeC
Confidence            8899999999999998874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=6.5e-13  Score=123.33  Aligned_cols=237  Identities=11%  Similarity=-0.024  Sum_probs=145.5

Q ss_pred             cCCCEEEeecCC-CC--eEEEec--CCCCeeee-----c-cCcccceEEEEEcCCCCeEEEEeCCC-----cEEEEEccC
Q 020461           20 KDGDLLFSCAKD-HT--PTVWFA--DNGERLGT-----Y-RGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVET   83 (326)
Q Consensus        20 ~~~~~l~s~~~d-~~--v~iw~~--~~~~~~~~-----~-~~h~~~V~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~   83 (326)
                      |+|++++-...+ +.  -.+|..  .+++....     + .+|...+..++|||||++|+.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            888877654322 21  245543  33432211     1 23555788999999999888766543     899999988


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ++......                                                   .  ...+..++|+|+++.|+.
T Consensus       161 g~~~~~~~---------------------------------------------------~--~~~~~~~~wspDg~~l~~  187 (710)
T 2xdw_A          161 AKELPDVL---------------------------------------------------E--RVKFSCMAWTHDGKGMFY  187 (710)
T ss_dssp             TEEEEEEE---------------------------------------------------E--EECSCCEEECTTSSEEEE
T ss_pred             CCCCcccc---------------------------------------------------c--CcccceEEEEeCCCEEEE
Confidence            76532100                                                   0  001334678999988888


Q ss_pred             eeCCCc----------------EEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeEEEEeC-----CCeEEEeecC
Q 020461          164 AGEDAI----------------VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDAR  221 (326)
Q Consensus       164 ~~~d~~----------------i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-----dg~i~iwd~~  221 (326)
                      ++.++.                |++|++.+++... .+.....|...+..+.++|||++|+.++.     +..|++||+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence            777765                9999998765321 11122234555788999999999987765     5689999998


Q ss_pred             C------cc-eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccccee--eeccccccCc--c
Q 020461          222 T------LE-LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE--EIGGVKGHFG--P  290 (326)
Q Consensus       222 ~------~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~h~~--~  290 (326)
                      +      +. ....+..........++++++.+++.+..+.          ....+..++.....  ....+..|..  .
T Consensus       268 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~----------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  337 (710)
T 2xdw_A          268 QESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHS----------PNYRLINIDFTDPEESKWKVLVPEHEKDV  337 (710)
T ss_dssp             GSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTC----------TTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             ccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCC----------CCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence            6      43 3444443322223357788887776544322          11123333322211  1122333433  6


Q ss_pred             eeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          291 INALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       291 v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +..++|++++.++++...|+..+||.++.
T Consensus       338 ~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          338 LEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             EEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            78899998888999999999877776654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.54  E-value=3.2e-12  Score=107.48  Aligned_cols=197  Identities=11%  Similarity=0.106  Sum_probs=136.4

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeec---------cCcccceEEEEEcC-CCCeEEEEe-CCCcE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTY---------RGHNGAVWCCDVSR-DSMTLITGS-ADQTA   76 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~---------~~h~~~V~~~~~~~-~~~~l~s~~-~d~~i   76 (326)
                      +......++++|+|+++++...++.|++|+..... .+..+         .++-.....++++| +++++++.+ .++.|
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            34467899999999999999999999999975442 44444         34445688999999 787777776 68999


Q ss_pred             EEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ++||. +++.+..+.....                 .                .   .      ...++......++++|
T Consensus       169 ~~~~~-~g~~~~~~~~~g~-----------------~----------------~---~------~~~~~~~~p~gia~d~  205 (329)
T 3fvz_A          169 VQFSP-SGKFVTQWGEESS-----------------G----------------S---S------PRPGQFSVPHSLALVP  205 (329)
T ss_dssp             EEECT-TSCEEEEECEECC-----------------S----------------S---S------CCTTEESCEEEEEEET
T ss_pred             EEEcC-CCCEEEEeccCCC-----------------C----------------C---C------CCCcccCCCcEEEEEC
Confidence            99994 4544433211000                 0                0   0      0011223456789999


Q ss_pred             C-CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC------CCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          157 L-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA------DGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       157 ~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~------~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      + +.++++...+++|++||..+++.+..+.. ..+...+.+++++|      +|...++.+.+..|++||..+++.+..+
T Consensus       206 ~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          206 HLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence            8 67777888899999999988877765532 24556678888888      4443344445568999999999998887


Q ss_pred             e----eccceEEEEeCCCCCeeEEe
Q 020461          230 V----TERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       230 ~----~~~~~~~~~~s~~~~~~~~~  250 (326)
                      .    ....+..++++|++ .++++
T Consensus       285 ~~~~~~~~~p~~ia~~~dG-~lyva  308 (329)
T 3fvz_A          285 KPVRKHFDMPHDIVASEDG-TVYIG  308 (329)
T ss_dssp             CCSSSCCSSEEEEEECTTS-EEEEE
T ss_pred             cCCCCccCCeeEEEECCCC-CEEEE
Confidence            4    23458899999998 45544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.53  E-value=1.9e-12  Score=120.80  Aligned_cols=243  Identities=16%  Similarity=0.059  Sum_probs=141.2

Q ss_pred             cCCceeEEEEccCCCEEEeecCC-----CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCc--------
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT--------   75 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~--------   75 (326)
                      |...+..++|||||++|+.++.+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            43467889999999998876654     4599999999987643 112222467899999 98888887664        


Q ss_pred             ------EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccce
Q 020461           76 ------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (326)
Q Consensus        76 ------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (326)
                            |.+|++.++...                                                ...+.....+...+
T Consensus       239 ~~~~~~v~~~~lgt~~~~------------------------------------------------~~lv~~~~~~~~~~  270 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSA------------------------------------------------DQPVFATPELPKRG  270 (741)
T ss_dssp             CCCCCEEEEEETTSCGGG------------------------------------------------CEEEECCTTCTTCE
T ss_pred             CCCCCEEEEEECCCCchh------------------------------------------------CEEEeccCCCCeEE
Confidence                  444444332100                                                00011111222346


Q ss_pred             eEEEEecCCcEEEEeeCCC-----cEEEEECCCC--ccccccccccCcceeeEEEEEcCCCCeEEEEeCC----CeEEEe
Q 020461          150 NRAVWGPLNRTIISAGEDA-----IVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLW  218 (326)
Q Consensus       150 ~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~--~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d----g~i~iw  218 (326)
                      ..+.|+|+|++|+..+.++     .|.+||+.++  +....+.   .+....... ++++|..|+..+.+    +.|.+|
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~  346 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRV  346 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence            7788999999888766544     7999999776  3122222   222223333 34888888877764    459999


Q ss_pred             ecCCcc-eEEEEeec--cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccc-cCcceeEE
Q 020461          219 DARTLE-LIKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINAL  294 (326)
Q Consensus       219 d~~~~~-~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v  294 (326)
                      |+.+++ ....+...  ..+..++++  ++.+++....++           ...++.++.. +.....+.. +.+.|..+
T Consensus       347 d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg-----------~~~l~~~~~~-g~~~~~l~~~~~~~v~~~  412 (741)
T 1yr2_A          347 DLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDA-----------KSQVLAFDLD-GKPAGAVSLPGIGSASGL  412 (741)
T ss_dssp             ECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETT-----------EEEEEEEETT-SCEEEECBCSSSCEEEEE
T ss_pred             eCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECC-----------EEEEEEEeCC-CCceeeccCCCCeEEEEe
Confidence            998752 33333322  224444444  444544433332           1123333321 112222332 35678899


Q ss_pred             EECCCCceEE----eecCCCcEEEeecCC
Q 020461          295 AFNPDGKSFS----SGGEDGYVRLHHFDP  319 (326)
Q Consensus       295 ~~s~d~~~la----t~s~Dg~i~l~~~~~  319 (326)
                      +++||++.|+    +....++|.+|++..
T Consensus       413 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          413 SGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             ECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             ecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            9999998665    334457888887654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=3e-11  Score=108.32  Aligned_cols=283  Identities=12%  Similarity=0.073  Sum_probs=172.6

Q ss_pred             ccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc--CCcEEEEEecCCCc
Q 020461           19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE--TGAQLFTFNFDSPA   96 (326)
Q Consensus        19 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~   96 (326)
                      +|.+.++++...+++|.++|..+++.+.++.... .+..+.|+||++++++++.|+.|.+||+.  +++.+..+......
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P  242 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  242 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence            3545678888899999999999999988886433 46689999999999999999999999995  77777666554445


Q ss_pred             ceeeee----cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc----------C-ccceeEEEEecCCc-E
Q 020461           97 RSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR-T  160 (326)
Q Consensus        97 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~-~  160 (326)
                      ..+.++    ++++.+++....    ...+.+.+.      ...+.+..+..          | ...+..+..++++. +
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~----~~~v~ViD~------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~  312 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYW----PPQYVIMDG------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  312 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEE----TTEEEEEET------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             ceeEEccccCCCCCEEEEEEcc----CCeEEEEEC------CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence            567777    455554443321    111111111      11222222211          1 22567778888765 4


Q ss_pred             EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcceEEEEee-cc---ce
Q 020461          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT-ER---PV  235 (326)
Q Consensus       161 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~~---~~  235 (326)
                      ++....+|.|.++|..+.+......  .........+.|+|+|+++++++ .++.|.++|.++++.+..+.. ..   +.
T Consensus       313 vv~~~~~g~v~~vd~~~~~~~~v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg  390 (567)
T 1qks_A          313 IVNVKETGKILLVDYTDLNNLKTTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG  390 (567)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred             EEEecCCCeEEEEecCCCccceeee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence            5566778999999987643322111  11223456788999999987666 578999999999998877765 22   21


Q ss_pred             EEEE-eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecC------
Q 020461          236 NAVT-MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE------  308 (326)
Q Consensus       236 ~~~~-~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~------  308 (326)
                      .... ++|++..+++++..+...+...|.........-|.     .+..+......-..|.++|++++|.....      
T Consensus       391 ~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k-----vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~  465 (567)
T 1qks_A          391 RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK-----ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE  465 (567)
T ss_dssp             TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS-----EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred             cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE-----EEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence            2333 57776666654422222233333322110000011     11112211122245788999998876553      


Q ss_pred             -CCcEEEeecCC
Q 020461          309 -DGYVRLHHFDP  319 (326)
Q Consensus       309 -Dg~i~l~~~~~  319 (326)
                       .++|.+++...
T Consensus       466 ~~~~v~v~d~~~  477 (567)
T 1qks_A          466 ISGSVAVFDIKA  477 (567)
T ss_dssp             HHTCEEEEEGGG
T ss_pred             cCceEEEEECCc
Confidence             46899987764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=2.9e-11  Score=98.81  Aligned_cols=184  Identities=13%  Similarity=0.094  Sum_probs=133.1

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEEEeC-CCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~   88 (326)
                      ..+.++.++|+|++|+  +.++.|..||. +++.+-.+..+. ..+.++.+.++++.+++.+. ++.|..+|. +++.+.
T Consensus        37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~  112 (276)
T 3no2_A           37 WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS  112 (276)
T ss_dssp             CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred             CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence            3578899999999988  34778999998 898888887653 47889999999999998887 676766665 566554


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  168 (326)
                      .+......                                              .++......+...+++.++++...++
T Consensus       113 ~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A          113 KTEFETGI----------------------------------------------ERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EEEECCSC----------------------------------------------SSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             EEeccCCC----------------------------------------------CcccccccCceECCCCCEEEEecCCC
Confidence            43221000                                              01111223345678899999999999


Q ss_pred             cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-------ceEEEEeC
Q 020461          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-------PVNAVTMS  241 (326)
Q Consensus       169 ~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~s  241 (326)
                      .|..||.+ |+.+.++...    ....++...++|..+++++.++.|..+|.++++.+.++....       .+..++..
T Consensus       147 ~v~~~d~~-G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~  221 (276)
T 3no2_A          147 EVREIAPN-GQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL  221 (276)
T ss_dssp             EEEEECTT-SCEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred             EEEEECCC-CCEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence            99999998 8776655321    235567778999999999999999999999999998886321       15566666


Q ss_pred             CCCCeeEE
Q 020461          242 PLLDHVVL  249 (326)
Q Consensus       242 ~~~~~~~~  249 (326)
                      +++..++.
T Consensus       222 ~~G~i~v~  229 (276)
T 3no2_A          222 QNGGLYIC  229 (276)
T ss_dssp             TTSCEEEE
T ss_pred             CCCCEEEE
Confidence            66655544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.49  E-value=2.4e-11  Score=99.80  Aligned_cols=185  Identities=12%  Similarity=0.159  Sum_probs=130.0

Q ss_pred             cCCceeEEEE-ccCCCEEEeecC-CCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            9 HERPLTYLKY-NKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         9 h~~~i~~~~~-s~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      |...+..+++ .++++++++... ++.|++|+ .+++.+..+.. +...+..++++++++++++...++.|.+||.. ++
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  152 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN  152 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence            3456789999 577887777643 88999999 67777666643 44568899999999888877788899999864 33


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      .+..+..                                                  .++...+..++++|++..+++..
T Consensus       153 ~~~~~~~--------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          153 VLHKFGC--------------------------------------------------SKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             EEEEEEC--------------------------------------------------TTTCSSEEEEEECSSSEEEEEEG
T ss_pred             EEEEeCC--------------------------------------------------CCccCCcEEEEECCCCCEEEEEC
Confidence            2211100                                                  01223456788999988888878


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCC-eEEEeecCCcceEEEEeecc---ceEEEEeC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTER---PVNAVTMS  241 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~---~~~~~~~s  241 (326)
                      .++.|++||.. ++.+..+.. .++...+..++++++|..+++...++ .|++||. +++.+..+....   .+..++++
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             CCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence            89999999974 444433321 23335678999999998888888776 9999996 456666665322   36688999


Q ss_pred             CCCCeeE
Q 020461          242 PLLDHVV  248 (326)
Q Consensus       242 ~~~~~~~  248 (326)
                      |++..++
T Consensus       260 ~~g~l~v  266 (286)
T 1q7f_A          260 DDGSVVL  266 (286)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence            9876433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=2.1e-12  Score=109.67  Aligned_cols=170  Identities=12%  Similarity=0.012  Sum_probs=121.9

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCC---------eee-eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---------RLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---------~~~-~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      +++.+++++...++++|+.++ +++|++++.+         ... ....+.. |..++|  |+++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            588999999999999999984 5569865433         111 1223566 999999  88899888 8899999998


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .+-.......                                                    .+...+.++.+.+  ..+
T Consensus       114 ~sl~~~~~~~----------------------------------------------------~~~~~v~~i~~~~--p~~  139 (388)
T 1xip_A          114 EELSEFRTVT----------------------------------------------------SFEKPVFQLKNVN--NTL  139 (388)
T ss_dssp             SSTTCEEEEE----------------------------------------------------ECSSCEEEEEECS--SEE
T ss_pred             hhhhccCccc----------------------------------------------------eeecceeeEEecC--CCE
Confidence            7643221110                                                    0111122222222  238


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce--EEEEe---------
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTYV---------  230 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~---------  230 (326)
                      +.+..||.|.+||++++....       +...|++++|||+|  ++.|..||++++|+...+++  ...+.         
T Consensus       140 av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~  210 (388)
T 1xip_A          140 VILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP  210 (388)
T ss_dssp             EEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred             EEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence            889999999999998776532       45679999999999  78899999999999988775  45551         


Q ss_pred             -eccceEEEEeCCCCCeeEE
Q 020461          231 -TERPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       231 -~~~~~~~~~~s~~~~~~~~  249 (326)
                       +...+.++.|.+.+..+++
T Consensus       211 ~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          211 VEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTTSEEEEEEESSSSEEEEE
T ss_pred             CCCeeEEEEEEecCCeEEEE
Confidence             2456889999998777665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.46  E-value=2.1e-10  Score=99.19  Aligned_cols=254  Identities=9%  Similarity=0.012  Sum_probs=151.0

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~   88 (326)
                      .....++|+++++++++...++.|++|+.+++.......... ... ++|+++++.|+++..++  .|.+|+..++....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            457899999999988888888999999998776654443322 233 89999999998888866  67777765443211


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  168 (326)
                      .+.                                  ..              .......+..++++|++..|+.+..++
T Consensus       209 ~~g----------------------------------~~--------------~~~~~~~p~~iav~p~~g~lyv~d~~~  240 (409)
T 3hrp_A          209 RIG----------------------------------QL--------------GSTFSGKIGAVALDETEEWLYFVDSNK  240 (409)
T ss_dssp             EEE----------------------------------EC--------------CTTSCSCCCBCEECTTSSEEEEECTTC
T ss_pred             Eee----------------------------------ec--------------cchhcCCcEEEEEeCCCCeEEEEECCC
Confidence            110                                  00              000123345678889655555577788


Q ss_pred             cEEEEECCCCccccccc--cccCcceee-E-EEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEeec-----------
Q 020461          169 IVRIWDTETGKLLKESD--KETGHKKTI-T-SLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTE-----------  232 (326)
Q Consensus       169 ~i~~wd~~~~~~~~~~~--~~~~h~~~v-~-~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------  232 (326)
                      .|..||..++... .+.  ...++...- . .++++|+ +..+++...++.|+.|+....  +..+...           
T Consensus       241 ~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~  317 (409)
T 3hrp_A          241 NFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLR  317 (409)
T ss_dssp             EEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEG
T ss_pred             cEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcc
Confidence            9999999866432 110  011122222 3 8999995 666667777889999997643  2222211           


Q ss_pred             -----cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeee-ccccccCcceeEEEECCCCceEEe
Q 020461          233 -----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEI-GGVKGHFGPINALAFNPDGKSFSS  305 (326)
Q Consensus       233 -----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~-~~~~~h~~~v~~v~~s~d~~~lat  305 (326)
                           ..+..+++++++. ++++.......+..++...+......-.... +..- ............|+++|+|.++++
T Consensus       318 ~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa  396 (409)
T 3hrp_A          318 EEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA  396 (409)
T ss_dssp             GGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred             cccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence                 2378899999987 4444320222233333222221110000000 0000 000011235789999999999999


Q ss_pred             ecCCCcEEEeecC
Q 020461          306 GGEDGYVRLHHFD  318 (326)
Q Consensus       306 ~s~Dg~i~l~~~~  318 (326)
                      -..+++|+-+.++
T Consensus       397 d~~n~~Ir~i~~e  409 (409)
T 3hrp_A          397 EAWGKAIRKYAVE  409 (409)
T ss_dssp             ESTTCEEEEEEEC
T ss_pred             ECCCCeEEEEEeC
Confidence            9999999887653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.46  E-value=2.4e-09  Score=88.11  Aligned_cols=274  Identities=11%  Similarity=0.104  Sum_probs=165.2

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      ....+.+++++++|+++++...++.|.+|+.. ++... .+..+...+..+++.+++++.++...++.|..||.. ++..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence            45578899999999988888888999999977 55432 233344578899999999877776667889999987 5543


Q ss_pred             EEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceE-EEeccCccceeEEEEecCCcEEEE
Q 020461           88 FTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        88 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                       .+...   .....+.+.+++.+.+.....     ..+  ..+.  .  . +... .........+..++++++++.+++
T Consensus        96 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i--~~~~--~--~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~  162 (300)
T 2qc5_A           96 -EYPLPQPDSGPYGITEGLNGDIWFTQLNG-----DRI--GKLT--A--D-GTIYEYDLPNKGSYPAFITLGSDNALWFT  162 (300)
T ss_dssp             -EEECSSTTCCEEEEEECSTTCEEEEETTT-----TEE--EEEC--T--T-SCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             -EecCCCCCCCCccceECCCCCEEEEccCC-----CeE--EEEC--C--C-CCEEEccCCCCCCCceeEEECCCCCEEEE
Confidence             23221   223344444445554443211     011  1111  1  0 1111 112233456788999999997777


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee--ccceEEEEeC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMS  241 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~s  241 (326)
                      ...++.|..+|. +++... +. ...+...+..++++++|...++....+.|..||. +++.......  ...+.+++++
T Consensus       163 ~~~~~~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d  238 (300)
T 2qc5_A          163 ENQNNSIGRITN-TGKLEE-YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG  238 (300)
T ss_dssp             ETTTTEEEEECT-TCCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             ecCCCeEEEECC-CCcEEE-ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence            666888999998 454332 21 1123456789999999987777667788999998 4444332111  2457788999


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +++. ++++..... .+..+|. .+...  .+.         +......+.+++++++|.++++.. .   +|+.++|
T Consensus       239 ~~g~-l~v~~~~~~-~i~~~~~-~g~~~--~~~---------~~~~~~~~~~i~~~~~g~l~v~~~-~---~i~~~~p  298 (300)
T 2qc5_A          239 KNSE-IWFTEWGAN-QIGRITN-DNTIQ--EYQ---------LQTENAEPHGITFGKDGSVWFALK-C---KIGKLNL  298 (300)
T ss_dssp             STTC-EEEEETTTT-EEEEECT-TSCEE--EEE---------CCSTTCCCCCEEECTTSCEEEECS-S---EEEEEEE
T ss_pred             CCCC-EEEeccCCC-eEEEECC-CCcEE--EEE---------CCccCCccceeEeCCCCCEEEEcc-C---ceEEeCC
Confidence            8876 444332211 2233332 12111  110         112234578999999998777555 3   5555554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.45  E-value=1.3e-10  Score=97.52  Aligned_cols=219  Identities=9%  Similarity=-0.027  Sum_probs=141.4

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc-----cceEEEEEcCCCCeEEEEe--CCCcEEEEEcc
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-----GAVWCCDVSRDSMTLITGS--ADQTAKLWNVE   82 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~-----~~V~~~~~~~~~~~l~s~~--~d~~i~~wd~~   82 (326)
                      ......++++++++++++...++.|.+||.++++....+....     .....+++  ++..++.+.  .+++|.++|+.
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC
Confidence            3557899999999766666588999999999998776665322     14456666  344555555  48899999999


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCcccee-----ceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEec
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-----NSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGP  156 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~  156 (326)
                      +++.+..+........+.+.+++++.++........     ...+...+.      .+++....+.-+ ......++++|
T Consensus       161 t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~------~t~~v~~~~~~~~g~~p~~la~~~  234 (328)
T 3dsm_A          161 TDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA------ETFTVEKQFKFKLGDWPSEVQLNG  234 (328)
T ss_dssp             TTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET------TTTEEEEEEECCTTCCCEEEEECT
T ss_pred             CCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC------CCCeEEEEEecCCCCCceeEEEec
Confidence            998877776554556667777777666544321100     011221111      112222233221 23578899999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC-CCCeEEEE----eCCCeEEEeecCCcceEEEEee
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG----SLDKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~  231 (326)
                      +++.++.+..  .|.+||..+++...... ..........++++| ++...++.    ..++.|.+||.. ++.+.++..
T Consensus       235 d~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          235 TRDTLYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             TSCEEEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             CCCEEEEEcc--EEEEEECCCCceeeeee-ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            9998877654  89999998877532111 111135678899999 55555665    578999999998 888888765


Q ss_pred             ccceEEEEe
Q 020461          232 ERPVNAVTM  240 (326)
Q Consensus       232 ~~~~~~~~~  240 (326)
                      ......++|
T Consensus       311 G~~P~~~~~  319 (328)
T 3dsm_A          311 GIIPGAFCW  319 (328)
T ss_dssp             EESEEEEEE
T ss_pred             ccCcceEEE
Confidence            544444443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=6.1e-10  Score=92.06  Aligned_cols=236  Identities=10%  Similarity=-0.004  Sum_probs=148.9

Q ss_pred             eecCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            7 KGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         7 ~~h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      ..+..-..+..|+++ +.++++...++.|..|+..+++.. .+ .....+.+++++++++++++ . +..|.+||.++++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence            334445578899996 456777778899999998877652 22 23567899999999995544 4 5678999998876


Q ss_pred             EEEEEecC--CC---cceeeeecCCeEEEEEcCccce----eceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           86 QLFTFNFD--SP---ARSVDFAVGDKLAVITTDPFME----LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        86 ~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ........  .+   .+.+.+.++..+.+........    ......++++..+     +... .+.......+.++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~~~-~~~~~~~~pngi~~sp  158 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HHVK-KYFDQVDISNGLDWSL  158 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SCEE-EEEEEESBEEEEEECT
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-----CCEE-EEeeccccccceEEcC
Confidence            54333321  11   2334555555554433111000    0011122222211     1111 1222334457899999


Q ss_pred             CCcEE-EEeeCCCcEEEEEC--CCCccc--cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee
Q 020461          157 LNRTI-ISAGEDAIVRIWDT--ETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       157 ~~~~l-~s~~~d~~i~~wd~--~~~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (326)
                      +++.+ ++.+.++.|.+||+  .+++..  ..+.....+......++++++|.+.++...++.|..||.++++.+..+..
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence            99866 45566889999987  455431  11111112335678899999998888877788999999999998888875


Q ss_pred             c-cceEEEEeC-CCCCeeEEecC
Q 020461          232 E-RPVNAVTMS-PLLDHVVLGGG  252 (326)
Q Consensus       232 ~-~~~~~~~~s-~~~~~~~~~~~  252 (326)
                      + ..+.+++|. |+++.++++..
T Consensus       239 p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          239 PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCceEEEEeCCCCCEEEEEcC
Confidence            5 578899998 88888877654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=5.6e-11  Score=98.21  Aligned_cols=189  Identities=10%  Similarity=0.016  Sum_probs=127.4

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCc----ccceEEEEEcCCCCeEEEEeCCCc-----
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLITGSADQT-----   75 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~l~s~~~d~~-----   75 (326)
                      .+..+...+.+++++|+|+++++...++.|.+|+.++++........    ...+..++++|+|+++++.+..++     
T Consensus        63 ~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~  142 (296)
T 3e5z_A           63 PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE  142 (296)
T ss_dssp             EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGG
T ss_pred             EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccc
Confidence            34456677899999999999888888899999999888764433221    124567899999988877432221     


Q ss_pred             ----------EEEEEccC-CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           76 ----------AKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        76 ----------i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                                -.||.+.. ++                                                     ...+..
T Consensus       143 ~~~~~~~~~~~~l~~~~~~g~-----------------------------------------------------~~~~~~  169 (296)
T 3e5z_A          143 GYGGEMELPGRWVFRLAPDGT-----------------------------------------------------LSAPIR  169 (296)
T ss_dssp             SSCCCCCSSSCEEEEECTTSC-----------------------------------------------------EEEEEC
T ss_pred             cccccccCCCcEEEEECCCCC-----------------------------------------------------EEEeec
Confidence                      12222211 11                                                     011112


Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECC-CCcc---ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                      +....+.++|+|+++.+++.+.++.|.+||+. +++.   ...+   ..+...+..++++++|...++.  ++.|.+||.
T Consensus       170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred             CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence            23345678899999988777888999999986 4443   1122   1234556789999999866666  789999998


Q ss_pred             CCcceEEEEeeccceEEEEe-CCCCCeeEEecC
Q 020461          221 RTLELIKTYVTERPVNAVTM-SPLLDHVVLGGG  252 (326)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~  252 (326)
                      + ++.+..+..+..+.+++| +|+++.++++..
T Consensus       245 ~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          245 D-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             T-SCEEEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred             C-CCEEEEEECCCCceeEEEECCCCCEEEEEcC
Confidence            7 677777664433888888 578877777643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.43  E-value=2.4e-10  Score=94.85  Aligned_cols=237  Identities=8%  Similarity=0.006  Sum_probs=145.9

Q ss_pred             ceeeeecCCceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      +..+..+........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++++++++...++.|.+|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            344555556678899999998 6777888899999987 454 3455556677899999999986665556678888887


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      + ++........                                         .+       .....++.++++|+|..+
T Consensus       115 ~-g~~~~~~~~~-----------------------------------------~~-------~~~~~~~~i~~d~dG~l~  145 (305)
T 3dr2_A          115 D-GQAHLLVGRY-----------------------------------------AG-------KRLNSPNDLIVARDGAIW  145 (305)
T ss_dssp             T-SCEEEEECEE-----------------------------------------TT-------EECSCCCCEEECTTSCEE
T ss_pred             C-CCEEEEEecc-----------------------------------------CC-------CccCCCCCEEECCCCCEE
Confidence            5 4322110000                                         00       001234567788888877


Q ss_pred             EE----eeC-------------CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC------CeEEEe
Q 020461          162 IS----AGE-------------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLW  218 (326)
Q Consensus       162 ~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d------g~i~iw  218 (326)
                      ++    |..             .+.|..||..+++.....     .......++++||++.|+.+...      +.|..|
T Consensus       146 ~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~  220 (305)
T 3dr2_A          146 FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF  220 (305)
T ss_dssp             EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred             EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence            75    332             245777777666543211     22345788999999988777665      789999


Q ss_pred             ecCCcceEEE---Ee--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeE
Q 020461          219 DARTLELIKT---YV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA  293 (326)
Q Consensus       219 d~~~~~~~~~---~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  293 (326)
                      ++.... +..   +.  ....+..++++++++ +.++. .++  +..++..             ++.+..+..+. .+.+
T Consensus       221 ~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~-~~g--v~~~~~~-------------g~~~~~~~~~~-~~~~  281 (305)
T 3dr2_A          221 AWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSS-GTG--VCVFDSD-------------GQLLGHIPTPG-TASN  281 (305)
T ss_dssp             EEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECC-SSE--EEEECTT-------------SCEEEEEECSS-CCCE
T ss_pred             EecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEec-CCc--EEEECCC-------------CCEEEEEECCC-ceeE
Confidence            987544 221   11  122355778888877 44443 222  2223321             11222222222 4789


Q ss_pred             EEECCCCceEEeecCCCcEEE
Q 020461          294 LAFNPDGKSFSSGGEDGYVRL  314 (326)
Q Consensus       294 v~~s~d~~~lat~s~Dg~i~l  314 (326)
                      ++|+|+++.|..++.++..++
T Consensus       282 ~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          282 CTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EEECTTSCEEEEEETTEEEEE
T ss_pred             EEEeCCCCEEEEEcCCeEEEE
Confidence            999999988877777754444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=2.9e-11  Score=112.74  Aligned_cols=235  Identities=12%  Similarity=0.037  Sum_probs=138.1

Q ss_pred             ccCCCEEEeecCCCC---eEEEecC-----CCCeeee------ccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEE
Q 020461           19 NKDGDLLFSCAKDHT---PTVWFAD-----NGERLGT------YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW   79 (326)
Q Consensus        19 s~~~~~l~s~~~d~~---v~iw~~~-----~~~~~~~------~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~w   79 (326)
                      +|+|++++....++.   -.+|...     .++....      -.+|...+..++|||||++|+.++.+     .+|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489998776654433   5667543     3332211      12344468899999999988776644     459999


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      |+.+++.+.....                                                     ...+..++|+|+ +
T Consensus       195 dl~tg~~~~~~~~-----------------------------------------------------~~~~~~~~wspD-~  220 (741)
T 1yr2_A          195 GVADGKPLADELK-----------------------------------------------------WVKFSGLAWLGN-D  220 (741)
T ss_dssp             ETTTCCEEEEEEE-----------------------------------------------------EEESCCCEESTT-S
T ss_pred             ECCCCCCCCccCC-----------------------------------------------------CceeccEEEECC-C
Confidence            9998875321000                                                     000123567888 7


Q ss_pred             EEEEeeCCCc--------------EEEEECCCCcccc-ccccccCcceeeEEEEEcCCCCeEEEEeCCC-----eEEEee
Q 020461          160 TIISAGEDAI--------------VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWD  219 (326)
Q Consensus       160 ~l~s~~~d~~--------------i~~wd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg-----~i~iwd  219 (326)
                      .|+.++.++.              |.+|++.+++... .+.....+...+..+.+||||++|+..+.++     .|++||
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d  300 (741)
T 1yr2_A          221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVAR  300 (741)
T ss_dssp             EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEE
T ss_pred             EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEE
Confidence            7776665543              8899987765321 1112223334578899999999988877554     899999


Q ss_pred             cCCc--ceEEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce--eeeccccccCcceeEE
Q 020461          220 ARTL--ELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGGVKGHFGPINAL  294 (326)
Q Consensus       220 ~~~~--~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~v  294 (326)
                      +.++  ++...+... ...... ++|+++.+++....+.          ....+..++....  .....+..+...+..+
T Consensus       301 ~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~----------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~  369 (741)
T 1yr2_A          301 VTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA----------PLKKIVRVDLSGSTPRFDTVVPESKDNLESV  369 (741)
T ss_dssp             EETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC----------TTCEEEEEECSSSSCEEEEEECCCSSEEEEE
T ss_pred             CCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC----------CCCEEEEEeCCCCccccEEEecCCCCeEEEE
Confidence            9876  313444332 222333 3477777766543221          1122333332221  1111123344456778


Q ss_pred             EECCCCceEEeecCCCcEEEeecCC
Q 020461          295 AFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       295 ~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      +|+ ++.++++...|+..+||.++.
T Consensus       370 ~~~-~~~lv~~~~~dg~~~l~~~~~  393 (741)
T 1yr2_A          370 GIA-GNRLFASYIHDAKSQVLAFDL  393 (741)
T ss_dssp             EEE-BTEEEEEEEETTEEEEEEEET
T ss_pred             EEE-CCEEEEEEEECCEEEEEEEeC
Confidence            887 677889999999999988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.41  E-value=3.5e-09  Score=90.24  Aligned_cols=282  Identities=12%  Similarity=0.007  Sum_probs=161.5

Q ss_pred             EEccCCCEEEeecC--CC---CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEc
Q 020461           17 KYNKDGDLLFSCAK--DH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNV   81 (326)
Q Consensus        17 ~~s~~~~~l~s~~~--d~---~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~   81 (326)
                      ...|++++++.+..  ..   +|.++|..+++.+.++..-..+  .++++||+++++.+.          .+++|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34578887777654  22   7899999999988888754444  899999999998886          3678999999


Q ss_pred             cCCcEEEEEecC--------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEE
Q 020461           82 ETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRA  152 (326)
Q Consensus        82 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~  152 (326)
                      .+.+.+..+...        .....+.++++.+.+++.....   ...+.+.+ .      .++.+.. +....    ++
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~---~~~v~viD-~------t~~~~~~~i~~~~----~~  170 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA---GPAVGLVV-Q------GGSSDDQLLSSPT----CY  170 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC---CCeEEEEE-C------CCCEEeEEcCCCc----eE
Confidence            988877665443        1233566777766655543210   11122211 1      1222322 22111    13


Q ss_pred             EEecCC-cEEEEeeCCCcEEEEECCCCccccccc--c-ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc--eE
Q 020461          153 VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESD--K-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LI  226 (326)
Q Consensus       153 ~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~--~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~  226 (326)
                      .+.|.+ ..+++.+.||.+.++|. +++......  . ..+.........+.+++..++..+.++.+.+.|+.+..  .+
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~  249 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence            344554 35566778999999999 776542211  0 01111112234456665555544577899999987542  22


Q ss_pred             EEEee-----------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461          227 KTYVT-----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (326)
Q Consensus       227 ~~~~~-----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  295 (326)
                      ..+..           +.....+.++|+++.++++......    ..++.....+..++..+.+.+..+. -......++
T Consensus       250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~----~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~  324 (373)
T 2mad_H          250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA----WKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS  324 (373)
T ss_pred             eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc----ccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEE
Confidence            22221           1113346788888877765331100    0000001123334443333333332 122578999


Q ss_pred             ECCCCc-eEEeec-CCCcEEEeecCCC
Q 020461          296 FNPDGK-SFSSGG-EDGYVRLHHFDPD  320 (326)
Q Consensus       296 ~s~d~~-~lat~s-~Dg~i~l~~~~~~  320 (326)
                      |+|||+ .++++. .++.|.+++....
T Consensus       325 ~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          325 VAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             ECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            999999 777777 4899999887653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=9.9e-11  Score=108.28  Aligned_cols=241  Identities=15%  Similarity=0.066  Sum_probs=138.1

Q ss_pred             ecCCceeEEEEccCCCEEE-----eecCCCCeEEEecCCCCeeeeccCcccc--eEEEEEcCCCCeEEEEeCCCc-----
Q 020461            8 GHERPLTYLKYNKDGDLLF-----SCAKDHTPTVWFADNGERLGTYRGHNGA--VWCCDVSRDSMTLITGSADQT-----   75 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~-----s~~~d~~v~iw~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~l~s~~~d~~-----   75 (326)
                      +|...+..++|||||++||     .|+.+..|++||+++++.+..   +...  ...++|+ |++.|+-++.+..     
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccc
Confidence            3555688899999999888     344557899999999986543   2222  3578899 9998888887743     


Q ss_pred             --------EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-Cc
Q 020461           76 --------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQ  146 (326)
Q Consensus        76 --------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  146 (326)
                              |.+|++.++...                                                ...+..... +.
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~------------------------------------------------~~~v~~~~~~~~  233 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQED------------------------------------------------DRLVFGAIPAQH  233 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGG------------------------------------------------CEEEESCSGGGC
T ss_pred             cccCCCcEEEEEECCCCccc------------------------------------------------ceEEEecCCCCC
Confidence                    555555432210                                                000111112 23


Q ss_pred             cceeEEEEecCCcEEEE-ee---CCCcEEEEECCCCc-cccccccccCcceeeEEEEEcCCCCeEE-EEeCC---CeEEE
Q 020461          147 GRINRAVWGPLNRTIIS-AG---EDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFL-TGSLD---KSAKL  217 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s-~~---~d~~i~~wd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~d---g~i~i  217 (326)
                      .....+.++|++++|+. .+   .+..|.++|+.++. ....+.   .+....... ++++|..|+ ....+   +.|..
T Consensus       234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~  309 (693)
T 3iuj_A          234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVT  309 (693)
T ss_dssp             CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred             eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence            34566789999997753 32   23589999987663 222222   223333333 455555554 44333   67999


Q ss_pred             eecCCcce--EEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-cccCcceeE
Q 020461          218 WDARTLEL--IKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINA  293 (326)
Q Consensus       218 wd~~~~~~--~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~  293 (326)
                      +|+.+++.  .+.+... ..+.  .+++.++.+++....++.           ..+++++...... ..+ ....+.+..
T Consensus       310 ~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~-----------~~l~~~d~~g~~~-~~l~~p~~~~~~~  375 (693)
T 3iuj_A          310 VDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT-----------ARVEQFDYEGKRV-REVALPGLGSVSG  375 (693)
T ss_dssp             EETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE-----------EEEEEECTTSCEE-EEECCSSSSEEEE
T ss_pred             EeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe-----------eEEEEEECCCCee-EEeecCCCceEEe
Confidence            99987654  2344332 2222  788888887765443321           2233443322111 111 123456777


Q ss_pred             EEECCCCceEEeecCC----CcEEEeecC
Q 020461          294 LAFNPDGKSFSSGGED----GYVRLHHFD  318 (326)
Q Consensus       294 v~~s~d~~~lat~s~D----g~i~l~~~~  318 (326)
                      +.++|++..++....+    ++|..+++.
T Consensus       376 ~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          376 FNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             CCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             eecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence            8888888876554433    566665553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=6.2e-10  Score=94.02  Aligned_cols=246  Identities=11%  Similarity=0.109  Sum_probs=140.7

Q ss_pred             CCceeEEEEccCCCEEEeec--CCCCeEEEecCCCCeeeec-------cCcccceEEEEEcCCCCeEEEEeC-----CCc
Q 020461           10 ERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTY-------RGHNGAVWCCDVSRDSMTLITGSA-----DQT   75 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~--~d~~v~iw~~~~~~~~~~~-------~~h~~~V~~~~~~~~~~~l~s~~~-----d~~   75 (326)
                      ...+..++++++|+++++..  .++.++||.+.+++.. .+       .+|-..+..+++++++++.++-..     +..
T Consensus        16 ~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           16 SLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SSCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            35778999999999988854  2344677766555433 22       234567899999999875554433     578


Q ss_pred             EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      |.+||+.+++.+..+......                                              ..+...++.++++
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~----------------------------------------------~~~~~~~~~v~vd  128 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPI----------------------------------------------TLSNSFVNDLAVD  128 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTT----------------------------------------------SCTTCCCCEEEEE
T ss_pred             EEEEECCCCeEEEEEECChhh----------------------------------------------cccccccceEEEe
Confidence            999999888755444321100                                              0011234566777


Q ss_pred             cCCcE-EEEee---CCCcEEEEECCCCccccccccc------------cC--------------cceeeEEEEEcCCCCe
Q 020461          156 PLNRT-IISAG---EDAIVRIWDTETGKLLKESDKE------------TG--------------HKKTITSLAKAADGSH  205 (326)
Q Consensus       156 ~~~~~-l~s~~---~d~~i~~wd~~~~~~~~~~~~~------------~~--------------h~~~v~~v~~s~~~~~  205 (326)
                      |++.. +++-.   .++.|.+||+.+++..+.....            .+              -...+..++++|++..
T Consensus       129 ~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~  208 (343)
T 2qe8_A          129 LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW  208 (343)
T ss_dssp             TTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE
T ss_pred             cCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE
Confidence            65443 34444   5778899998776544322110            00              0023578999999998


Q ss_pred             EEEEeCCCeEEEeecCCc----------ce---EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEe
Q 020461          206 FLTGSLDKSAKLWDARTL----------EL---IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF  272 (326)
Q Consensus       206 l~s~s~dg~i~iwd~~~~----------~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (326)
                      |+.+..++. ++|.+.+.          +.   +...........+++++++...++....  ..+..+|...+.+..  
T Consensus       209 ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~--~~V~~~d~~~G~~~~--  283 (343)
T 2qe8_A          209 LYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH--SAIGVITSADRAYKL--  283 (343)
T ss_dssp             EEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG--TEEEEEETTTTEEEE--
T ss_pred             EEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCC--CeEEEEECCCCCEEE--
Confidence            888877663 44443211          00   1111122346678888887544332222  223333331122111  


Q ss_pred             ecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          273 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                              +.. ..+......++|.+++.++++.+..+.+.+|.
T Consensus       284 --------~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          284 --------LVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             --------EEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             --------EEE-CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence                    100 01234578999999999888887666654443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.33  E-value=6.1e-11  Score=100.68  Aligned_cols=142  Identities=8%  Similarity=0.009  Sum_probs=110.0

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      |.....+.+ |++++|  |+++|+++ .++.|++|++.+.........|...|..+.+.+.  .++++..||.+.+||++
T Consensus        81 ~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           81 FKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLR  154 (388)
T ss_dssp             CSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETT
T ss_pred             ceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEcc
Confidence            434556777 999999  99999998 8899999999877766666777888888777654  38899999999999998


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      ++....                                                        +...|.+++|+|+|  ++
T Consensus       155 ~~~~~~--------------------------------------------------------~~~~Vs~v~WSpkG--~~  176 (388)
T 1xip_A          155 TKSTKQ--------------------------------------------------------LAQNVTSFDVTNSQ--LA  176 (388)
T ss_dssp             TCCEEE--------------------------------------------------------EEESEEEEEECSSE--EE
T ss_pred             CCcccc--------------------------------------------------------ccCCceEEEEcCCc--eE
Confidence            664320                                                        11357889999998  67


Q ss_pred             EeeCCCcEEEEECCCCcc--ccccc------cccCcceeeEEEEEcCCCCeEEE
Q 020461          163 SAGEDAIVRIWDTETGKL--LKESD------KETGHKKTITSLAKAADGSHFLT  208 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~--~~~~~------~~~~h~~~v~~v~~s~~~~~l~s  208 (326)
                      .|..||++++|+...++.  ..++.      ...+|...|.++.|.+++.++++
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            799999999998876653  22331      11247789999999999998886

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.31  E-value=1.6e-09  Score=91.71  Aligned_cols=234  Identities=11%  Similarity=0.064  Sum_probs=140.4

Q ss_pred             EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCcc-------cceEEEEEcCCCCeEEEEeC--CCc
Q 020461           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT   75 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h~-------~~V~~~~~~~~~~~l~s~~~--d~~   75 (326)
                      .+++||||++++.++          .++.|.+||..+.+.+.++.-..       ..-..++|+|||++++.+..  +++
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999887775          36789999999999888764211       13456899999999888874  689


Q ss_pred             EEEEEccCCcEEEEEecCCCc--------ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           76 AKLWNVETGAQLFTFNFDSPA--------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                      |.++|+.+++.+..+......        ..+...+++.++.+.......+...    .  ..          .+.-...
T Consensus       162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~----~--~~----------~~~~~~~  225 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT----H--TE----------VFHPEDE  225 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE----E--CC----------CCSCTTS
T ss_pred             EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEe----e--cc----------eeccccc
Confidence            999999999988777543210        0011222223322222110000000    0  00          0000001


Q ss_pred             ce-eEEEEe-cCCcEEEEeeCCCcEEEEECCCCcc--ccccccc------cC-cceeeEEEEEcCCCCeEEEEeC-----
Q 020461          148 RI-NRAVWG-PLNRTIISAGEDAIVRIWDTETGKL--LKESDKE------TG-HKKTITSLAKAADGSHFLTGSL-----  211 (326)
Q Consensus       148 ~i-~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~------~~-h~~~v~~v~~s~~~~~l~s~s~-----  211 (326)
                      ++ ....|. +++++++ .+.+|+|.+.|..+...  ...+...      .+ .......+++++++..+.....     
T Consensus       226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence            11 113454 5665444 55579999999865532  2111100      00 1223445777899888887653     


Q ss_pred             -----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCC-eeEEecCCCcceeEeecccCc
Q 020461          212 -----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAG  266 (326)
Q Consensus       212 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~d~~~~  266 (326)
                           .++|-+.|+++++.+..+.....+..+++++++. .++++.+.+ ..+..+|...+
T Consensus       305 ~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~-~~VsViD~~t~  364 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD-KTLYIHDAESG  364 (386)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT-TEEEEEETTTC
T ss_pred             ccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC-CeEEEEECCCC
Confidence                 2579999999999999998888889999999997 555543322 22344454433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.31  E-value=8e-10  Score=89.76  Aligned_cols=182  Identities=8%  Similarity=-0.033  Sum_probs=122.8

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      ..+.+++++++|+++++.. ++.|.+|+....... .+. .....+..++++++++.+++...++.|.+|+..+......
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            4578899999999777766 889999997655433 232 2335688999999998777777778888886543221100


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  169 (326)
                                                                          .......+..++++|+++.+++...++.
T Consensus       145 ----------------------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~  172 (270)
T 1rwi_B          145 ----------------------------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNR  172 (270)
T ss_dssp             ----------------------------------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTE
T ss_pred             ----------------------------------------------------ccccCCCceeEEEeCCCCEEEEECCCCE
Confidence                                                                0001123455778888887777777889


Q ss_pred             EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeE
Q 020461          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVV  248 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~  248 (326)
                      |.+||..........   ..+...+..++++++|...++...++.|..||............. ..+.++++++++. ++
T Consensus       173 i~~~~~~~~~~~~~~---~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~  248 (270)
T 1rwi_B          173 VVKLEAESNNQVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VY  248 (270)
T ss_dssp             EEEECTTTCCEEECC---CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EE
T ss_pred             EEEEecCCCceEeec---ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EE
Confidence            999998765433211   122256789999999977777777889999998765443221111 4578899999886 44


Q ss_pred             Ee
Q 020461          249 LG  250 (326)
Q Consensus       249 ~~  250 (326)
                      ++
T Consensus       249 v~  250 (270)
T 1rwi_B          249 VA  250 (270)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.30  E-value=8.4e-09  Score=87.28  Aligned_cols=284  Identities=12%  Similarity=0.054  Sum_probs=160.5

Q ss_pred             EEEccCCCEEEeecC-----CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEE
Q 020461           16 LKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWN   80 (326)
Q Consensus        16 ~~~s~~~~~l~s~~~-----d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd   80 (326)
                      ....|+++.++....     ++.|.+.|..+++.+.++..-..+ . ++++||+++++.++          .+++|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345799998877765     679999999999999888754555 4 99999999888776          367899999


Q ss_pred             ccCCcEEEEEecCC--------CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461           81 VETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (326)
Q Consensus        81 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (326)
                      ..+.+.+..+....        ....+.++++++.+.+....   ....+.+.+..      ..+.+..+.-..  . ..
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~---~~~~VsVID~~------t~~vv~tI~v~g--~-~~  183 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---PAPAVGVVDLE------GKAFKRMLDVPD--C-YH  183 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---SSCEEEEEETT------TTEEEEEEECCS--E-EE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC---CCCeEEEEECC------CCcEEEEEECCC--c-ce
Confidence            99999887775432        34557778777665554310   01112222211      122222222111  0 11


Q ss_pred             EEecCCcEEEEeeCCCcEEEEECCC-Cccccccccc-cCcceee-EEEEE-cCCCCeEEEEeCCCeEEEeecCCcc--eE
Q 020461          153 VWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKE-TGHKKTI-TSLAK-AADGSHFLTGSLDKSAKLWDARTLE--LI  226 (326)
Q Consensus       153 ~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~-~~h~~~v-~~v~~-s~~~~~l~s~s~dg~i~iwd~~~~~--~~  226 (326)
                      .+....+.+++.+.||.+.+.++.+ ++........ ..-...+ ....| .++|.+++ .+.+|++++.|..+..  .+
T Consensus       184 ~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~  262 (386)
T 3sjl_D          184 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL  262 (386)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC
T ss_pred             eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee
Confidence            2222345666777788888888865 4432111000 0001112 12344 36775444 5558999999997653  33


Q ss_pred             EEEe-----------eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461          227 KTYV-----------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (326)
Q Consensus       227 ~~~~-----------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  295 (326)
                      ..+.           .+.....++++++++.++++-.++..    ..++....++..+|..+.+.+..+.- ..+++.|+
T Consensus       263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~----~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~la  337 (386)
T 3sjl_D          263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE----WRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSIN  337 (386)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT----TCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEE
T ss_pred             cceeccccccccccccCCCcceeeECCCCCeEEEEeccccc----cccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEE
Confidence            3332           01123356778888887775321100    00011112233333333332222211 12678999


Q ss_pred             ECCCCc-eEEe-ecCCCcEEEeecCC
Q 020461          296 FNPDGK-SFSS-GGEDGYVRLHHFDP  319 (326)
Q Consensus       296 ~s~d~~-~lat-~s~Dg~i~l~~~~~  319 (326)
                      |+||++ .|.+ ...++.|.+++...
T Consensus       338 vs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          338 VSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             ECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             ECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            999997 5555 55699999977654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.29  E-value=8.9e-09  Score=87.76  Aligned_cols=220  Identities=8%  Similarity=-0.046  Sum_probs=131.7

Q ss_pred             EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCc-------ccceEEEEEcCCCCeEEEEeC--CCc
Q 020461           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT   75 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h-------~~~V~~~~~~~~~~~l~s~~~--d~~   75 (326)
                      .++|||||++|+.+.          .++.|.+||..+.+.+.++.--       ...-..+.|+||+++|+.++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            889999999988876          3678999999988877665321       112347889999999998874  578


Q ss_pred             EEEEEccCCcEEEE-EecCCCcceeeeecCC--eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE------eccCc
Q 020461           76 AKLWNVETGAQLFT-FNFDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI------LKGPQ  146 (326)
Q Consensus        76 i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  146 (326)
                      |.++| .+++.+.. +.....   ..+.+..  .++..+.+....      ....       .+.....      ..+..
T Consensus       150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~------~vd~-------~g~~~~~~~~~~~~~~~~  212 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLA------KTDH-------AGGAAGAGLVGAMLTAAQ  212 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEE------EEEC-------CCcEEEEEeccccccCCc
Confidence            99999 99887765 433211   2222211  111111111100      0000       0000000      01111


Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc--ccccccc------cC-cceeeEEEEEcCCCCeEEEEeC------
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKE------TG-HKKTITSLAKAADGSHFLTGSL------  211 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~------~~-h~~~v~~v~~s~~~~~l~s~s~------  211 (326)
                      .......+.+++..++..+..+.+.+.|+.++..  ...+...      .+ .......+.+++++..+..+..      
T Consensus       213 p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~  292 (373)
T 2mad_H          213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             ceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence            1112244566655444444678899999865422  1111100      00 0122344778999998887654      


Q ss_pred             ----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCC-eeEEec
Q 020461          212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGG  251 (326)
Q Consensus       212 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~  251 (326)
                          ++.|.+.|.++++.+.++........++++|+++ .++++.
T Consensus       293 ~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          293 LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence                3579999999999999998777799999999999 555543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=1.6e-08  Score=84.63  Aligned_cols=227  Identities=14%  Similarity=0.044  Sum_probs=138.9

Q ss_pred             eeEEEEccCC-CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461           13 LTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        13 i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      .....|+|++ .++++...++.|.+|+.++++.. .+. ....+.+++++++++++++. .+ .|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            4678999975 46667777889999998877543 232 34578999999999876654 44 48999998887543332


Q ss_pred             cCC-----CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-Eee
Q 020461           92 FDS-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAG  165 (326)
Q Consensus        92 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~  165 (326)
                      ...     ....+.+.++..+.+...... .......++.+. .     +. ...+..+....+.++|+|+++.++ +..
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~~~~~~~l~~~~-~-----g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVA-K-----GK-VTKLFADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEE-T-----TE-EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCc-CCCCceEEEEEe-C-----Cc-EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence            211     123445555555544322100 000011222221 1     11 111222223467889999998665 445


Q ss_pred             CCCcEEEEECC--CC-ccc--cccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEE
Q 020461          166 EDAIVRIWDTE--TG-KLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVT  239 (326)
Q Consensus       166 ~d~~i~~wd~~--~~-~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~  239 (326)
                      .++.|.+||+.  ++ +..  ..+............++++++|.+.++...++.|..||. +++.+..+..+ ..+.+++
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~a  277 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPA  277 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEE
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEE
Confidence            67899999985  55 321  111111122345678999999987777777789999998 56666666543 3588899


Q ss_pred             eC-CCCCeeEEecC
Q 020461          240 MS-PLLDHVVLGGG  252 (326)
Q Consensus       240 ~s-~~~~~~~~~~~  252 (326)
                      |+ ++++.++++..
T Consensus       278 f~g~d~~~L~vt~~  291 (326)
T 2ghs_A          278 FIGPDASRLLVTSA  291 (326)
T ss_dssp             EESTTSCEEEEEEB
T ss_pred             EecCCCCEEEEEec
Confidence            98 88777766543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.24  E-value=1.3e-07  Score=77.58  Aligned_cols=239  Identities=9%  Similarity=0.036  Sum_probs=143.9

Q ss_pred             cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec---CCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (326)
Q Consensus        49 ~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (326)
                      ..+...+.++++.++++..++...++.|.+||.. ++.. .+..   ......+.+.+++.+.++....     ..+...
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~   83 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIGRI   83 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEE
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCC-----CeEEEE
Confidence            3455678999999999877776668899999988 5433 2222   1233445555555554443211     011111


Q ss_pred             eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe
Q 020461          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH  205 (326)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~  205 (326)
                      .  .  .  +.............+..++++|++..+++...++.|..||. +++.....  .......+..++++++|..
T Consensus        84 ~--~--~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~--~~~~~~~~~~i~~~~~g~l  154 (299)
T 2z2n_A           84 T--K--K--GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE--LPNKGSYPSFITLGSDNAL  154 (299)
T ss_dssp             C--T--T--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE--CSSTTCCEEEEEECTTSCE
T ss_pred             C--C--C--CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec--CCCCCCCCceEEEcCCCCE
Confidence            1  0  0  11111112223456788999999988887777889999998 55433211  1123456789999999987


Q ss_pred             EEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461          206 FLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (326)
Q Consensus       206 l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (326)
                      .++...++.|..||. +++......  ....+..+++++++.. +++..... .+..+|. .+...  .+         .
T Consensus       155 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~-~i~~~~~-~g~~~--~~---------~  219 (299)
T 2z2n_A          155 WFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-WFVEIIGN-KIGRITT-SGEIT--EF---------K  219 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-EEEETTTT-EEEEECT-TCCEE--EE---------E
T ss_pred             EEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-EEEccCCc-eEEEECC-CCcEE--EE---------E
Confidence            777777889999998 665543211  1235778899988764 43322221 2333333 22211  01         0


Q ss_pred             ccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      ...+...+..++++++|..+++...++.|..|+.+
T Consensus       220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             CCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            12234568899999999988877678888887764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.17  E-value=1e-08  Score=88.23  Aligned_cols=233  Identities=9%  Similarity=-0.014  Sum_probs=141.0

Q ss_pred             EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCc-------ccceEEEEEcCCCCeEEEEeC--CCc
Q 020461           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT   75 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h-------~~~V~~~~~~~~~~~l~s~~~--d~~   75 (326)
                      .+.+||||++|+.+.          .++.|.++|..+++.+.++.--       ...-..+.|+||+++++.+..  +++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888776          3678999999999988776421       122356789999999998874  578


Q ss_pred             EEEEEccCCcEEEEEecCCC--------cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                      |.+.|+.+++.+..+.....        ...+.+..++.+.++... ...+....     .           ..+.-...
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~-----~-----------~~~~v~~~  264 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTN-----T-----------EVFHTEDE  264 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEE-----C-----------CCCSCTTS
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEe-----e-----------eeeccCCC
Confidence            99999999988776654221        000111222222222110 00000000     0           00000011


Q ss_pred             ce-eEEEEecCCcEEEEeeCCCcEEEEECCCCccc--ccccc----ccCc---ceeeEEEEEcCCCCeEEEEeC------
Q 020461          148 RI-NRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDK----ETGH---KKTITSLAKAADGSHFLTGSL------  211 (326)
Q Consensus       148 ~i-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~----~~~h---~~~v~~v~~s~~~~~l~s~s~------  211 (326)
                      ++ ....+.+++..++.....+.|.+.|.......  ..+..    ....   ......+++++++.++.....      
T Consensus       265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence            11 12456888777666667889999998654321  11000    0000   111223688999887776643      


Q ss_pred             ----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCC-eeEEecCCCcceeEeecccC
Q 020461          212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRA  265 (326)
Q Consensus       212 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~d~~~  265 (326)
                          ++.|.+.|.++.+.+..+........++++|+++ .++++-.. ...+...|...
T Consensus       345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~-s~~VsVID~~t  402 (426)
T 3c75_H          345 HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG-TQTLHIYDAAT  402 (426)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT-TTEEEEEETTT
T ss_pred             ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC-CCeEEEEECCC
Confidence                3579999999999999998777799999999998 66655422 22344444433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=9e-08  Score=82.37  Aligned_cols=281  Identities=11%  Similarity=0.007  Sum_probs=157.9

Q ss_pred             cCCCEEEeecCC-----CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEccCC
Q 020461           20 KDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETG   84 (326)
Q Consensus        20 ~~~~~l~s~~~d-----~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~   84 (326)
                      +++++++.+...     +.|.+.|..+.+.+.++..-..+  .+.++||+++++.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            567766555442     69999999999999888754555  799999999888876          4678999999999


Q ss_pred             cEEEEEecC--------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           85 AQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        85 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      +.+..+...        .....+.++++.+.+.++...   ....+.+.+..      ..+.+..+.-..    +....|
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~---~~~~VsVID~~------t~kvv~~I~v~g----~~~~~p  226 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS---PAPAVGVVDLE------GKTFDRMLDVPD----CYHIFP  226 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS---SSCEEEEEETT------TTEEEEEEECCS----EEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC---CCCeEEEEECC------CCeEEEEEEcCC----ceeecc
Confidence            988776543        234456777777665554321   01111111111      112222222111    012233


Q ss_pred             CC-cEEEEeeCCCcEEEEECCCCcccccc--ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE--EEEee
Q 020461          157 LN-RTIISAGEDAIVRIWDTETGKLLKES--DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVT  231 (326)
Q Consensus       157 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~  231 (326)
                      .+ ..+++.+.||.+.+.+..+++.....  ....+.......+.+++++..++..+..+.+.+.|+......  ..+..
T Consensus       227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred             CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence            32 44556666777777777544332110  000111111224567888888877788899999998654321  11110


Q ss_pred             -----------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC
Q 020461          232 -----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (326)
Q Consensus       232 -----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~  300 (326)
                                 +.....++++|+++.++++-.....    ..++.....+..+|..+.+.+..+.. ....+.++|+|||
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~----gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg  381 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE----WKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDA  381 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT----TCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSS
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEeccccc----ccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCC
Confidence                       0112236888888887765321000    00000011233333333333322221 1247899999999


Q ss_pred             c-eEEeec-CCCcEEEeecCCC
Q 020461          301 K-SFSSGG-EDGYVRLHHFDPD  320 (326)
Q Consensus       301 ~-~lat~s-~Dg~i~l~~~~~~  320 (326)
                      + .+++.. .++.|.+++....
T Consensus       382 ~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          382 EPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             SCEEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEEcCCCCeEEEEECCCC
Confidence            9 777777 5999999877654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.15  E-value=1.4e-08  Score=84.16  Aligned_cols=204  Identities=9%  Similarity=0.045  Sum_probs=121.1

Q ss_pred             cCCceeEEEEccC-CCEEEeecCCCCeEEEecCCCCeeee-ccC----cccceEEEEEcCCCCeEEEEeCC---------
Q 020461            9 HERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGT-YRG----HNGAVWCCDVSRDSMTLITGSAD---------   73 (326)
Q Consensus         9 h~~~i~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~-~~~----h~~~V~~~~~~~~~~~l~s~~~d---------   73 (326)
                      +...+..++++++ ++++++...+ .|.+|+.+ ++.... ...    ....+..+++++++++.++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4456889999999 7766665544 78889987 665433 221    12357899999999877776655         


Q ss_pred             ------CcEEEEEccCCcEEEEEecCCCcceeeee----cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461           74 ------QTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (326)
Q Consensus        74 ------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (326)
                            +.|..||.. ++.............+.+.    ++...+.+....    ...+..+................+.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~  221 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP----TKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT----TTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC----CCeEEEEECCCCCccccceEEEECC
Confidence                  456666665 4443322222223455566    555333222111    0111111111000000000122233


Q ss_pred             cCc-cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecC
Q 020461          144 GPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDAR  221 (326)
Q Consensus       144 ~~~-~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~  221 (326)
                      ++. ..+..+++++++.++++...++.|.+||..+++....+.   .+...+.++++++++..| ++...++.|..|++.
T Consensus       222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            333 557789999999888887788899999998666544332   234668899999999855 455566889999876


Q ss_pred             C
Q 020461          222 T  222 (326)
Q Consensus       222 ~  222 (326)
                      .
T Consensus       299 ~  299 (314)
T 1pjx_A          299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.15  E-value=6.4e-09  Score=87.99  Aligned_cols=221  Identities=10%  Similarity=-0.048  Sum_probs=129.6

Q ss_pred             EEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCcc-------cceEEEEEcCCCCeEEEEeC--CCc
Q 020461           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT   75 (326)
Q Consensus        15 ~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h~-------~~V~~~~~~~~~~~l~s~~~--d~~   75 (326)
                      .+.|+||+++++.+.          .+++|.+||..+++.+.++....       ..-..++++||+++++.+..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888876          37899999999999998875431       23457899999999998874  467


Q ss_pred             EEE--EEccCCcEEEEEecCCC--------cceeeeecCCeEEEEEcCc----cceece----eeeeee---eccCCC--
Q 020461           76 AKL--WNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDP----FMELNS----AIHVKR---IARDPA--  132 (326)
Q Consensus        76 i~~--wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~---~~~~~~--  132 (326)
                      +.+  +|..+   +..+.....        ...+....++.+..+..+.    ...+..    .+.+..   ...+..  
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  88876   222221110        0001111222222221111    000000    000000   000000  


Q ss_pred             ---CCCCceEEEeccC---------------------ccceeEEEEecCCcEEEEeeC---------CCcEEEEECCCCc
Q 020461          133 ---DQGGESVLILKGP---------------------QGRINRAVWGPLNRTIISAGE---------DAIVRIWDTETGK  179 (326)
Q Consensus       133 ---~~~~~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~  179 (326)
                         ..+.-......+.                     ......+.++|+++.++.+..         ++.+.++|+.+.+
T Consensus       226 ~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~  305 (368)
T 1mda_H          226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ  305 (368)
T ss_dssp             EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred             EEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe
Confidence               0000000000000                     011122679999987775432         2356699999988


Q ss_pred             cccccccccCcceeeEEEEEcCCCCe-EEEEe-CCCeEEEeecCCcceEEEEeeccceEEEEeCC
Q 020461          180 LLKESDKETGHKKTITSLAKAADGSH-FLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (326)
Q Consensus       180 ~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~  242 (326)
                      .+..+..  +  .....+++++||++ +++.. .+++|.++|+++++.+.++........+++++
T Consensus       306 vv~~i~v--g--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          306 TSGPISN--G--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EEECCEE--E--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred             EEEEEEC--C--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence            7776542  2  35789999999984 56666 59999999999999999987766666776654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.10  E-value=1.8e-10  Score=98.25  Aligned_cols=201  Identities=13%  Similarity=0.057  Sum_probs=105.9

Q ss_pred             CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCc---c
Q 020461           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA---R   97 (326)
Q Consensus        21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~   97 (326)
                      ++.++++++.|+.|+.||.++|+.+-.++.  +.+.+..+..+++.+++++.|+.|..||.++++.+..+.+..+.   .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999998877665  45555555667778888899999999999998876655432110   0


Q ss_pred             eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCC
Q 020461           98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET  177 (326)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~  177 (326)
                      ...+..++.+++...      ...+..++.      ..++....+..+.    ....+|++..+++++.|+.|..||.++
T Consensus        86 sp~~~~~~~v~~g~~------dg~v~a~D~------~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t  149 (369)
T 2hz6_A           86 SPCRSSDGILYMGKK------QDIWYVIDL------LTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT  149 (369)
T ss_dssp             CSCC-----CCCCEE------EEEEEEECC------C--------------------------EEEEEEEEEEECCCSSS
T ss_pred             CceEecCCEEEEEeC------CCEEEEEEC------CCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC
Confidence            000101111111111      111111111      1122222222221    123456778899999999999999999


Q ss_pred             CccccccccccCcceeeEEEEEcCCC---CeEEEEeCCCeEEEeecCCcceEEEEeeccceE-EEEeCCCC
Q 020461          178 GKLLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYVTERPVN-AVTMSPLL  244 (326)
Q Consensus       178 ~~~~~~~~~~~~h~~~v~~v~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~s~~~  244 (326)
                      ++.+-....     .......++.+.   ..+++++.||.|+.||.++++.+-++....++. ...+++++
T Consensus       150 G~~~W~~~~-----~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          150 RELRWNATY-----FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREG  215 (369)
T ss_dssp             SSCCCEEEE-----EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSS
T ss_pred             CCEEEeEec-----ccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCc
Confidence            876544321     112223334432   567889999999999999999887776554443 23344443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.09  E-value=6.1e-08  Score=83.70  Aligned_cols=209  Identities=12%  Similarity=0.080  Sum_probs=119.9

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCC
Q 020461           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD  133 (326)
Q Consensus        54 ~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (326)
                      ....++|+++++++++...++.|++||+++++......                                          
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~------------------------------------------  169 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP------------------------------------------  169 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec------------------------------------------
Confidence            45678888888766666667888888887654322110                                          


Q ss_pred             CCCceEEEeccCccceeEEEEecCCcEEEEeeCCC--cEEEEECCCCccccccccc-cCcceeeEEEEEcCCCCeEEEEe
Q 020461          134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGS  210 (326)
Q Consensus       134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~s  210 (326)
                                . ..... ++|+|+++.|+.+..++  .|.+||...+.....+... ......+.+++++|++..|+.+.
T Consensus       170 ----------~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d  237 (409)
T 3hrp_A          170 ----------G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVD  237 (409)
T ss_dssp             ----------T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEEC
T ss_pred             ----------c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEE
Confidence                      0 01112 67888888888777765  7888887655432222000 11335577899999555566677


Q ss_pred             CCCeEEEeecCCcceEEE----Eeecc---ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeeccc--ceeee
Q 020461          211 LDKSAKLWDARTLELIKT----YVTER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEI  281 (326)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~----~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~  281 (326)
                      .++.|+.||..++....-    .....   +.+.++++|++..++++..... .+..++.... ... +....  .+..-
T Consensus       238 ~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~-~I~~~~~~g~-~~~-~~g~~~~~g~~d  314 (409)
T 3hrp_A          238 SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS-SVYKITPDGE-CEW-FCGSATQKTVQD  314 (409)
T ss_dssp             TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT-EEEEECTTCC-EEE-EEECTTCCSCBC
T ss_pred             CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC-EEEEEecCCC-EEE-EEeCCCCCCcCC
Confidence            789999999987653221    11111   1138999997666666543322 2222322111 110 00000  00000


Q ss_pred             -ccccccCcceeEEEECCCCceEEeec-CCCcEEEeecCC
Q 020461          282 -GGVKGHFGPINALAFNPDGKSFSSGG-EDGYVRLHHFDP  319 (326)
Q Consensus       282 -~~~~~h~~~v~~v~~s~d~~~lat~s-~Dg~i~l~~~~~  319 (326)
                       ............++|+|+|.++++-+ .+++|+.|+...
T Consensus       315 g~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          315 GLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             EEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             CcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence             00001123478999999999888888 889999987543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.05  E-value=2.2e-07  Score=74.46  Aligned_cols=187  Identities=12%  Similarity=0.037  Sum_probs=124.4

Q ss_pred             ceeEEEEccCCCEEEeecC--CCCeEEEecCCCCeeeeccCcc-cceEEEEEcCCCCeEEE-EeCCCcEEEEEccCCcEE
Q 020461           12 PLTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLIT-GSADQTAKLWNVETGAQL   87 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~   87 (326)
                      ....+.|++++.++++.+.  +++|++.|.++++.+..+.-.. .....+++.  ++.|+. .-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3578999998766666553  6899999999999888764211 123345554  445544 446789999999888766


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      ..+....+                                                  .+    ..++++++.++.+..+
T Consensus       100 ~~i~~g~~--------------------------------------------------~g----~glt~Dg~~l~vs~gs  125 (266)
T 2iwa_A          100 KNFTHQMK--------------------------------------------------DG----WGLATDGKILYGSDGT  125 (266)
T ss_dssp             EEEECCSS--------------------------------------------------SC----CEEEECSSSEEEECSS
T ss_pred             EEEECCCC--------------------------------------------------Ce----EEEEECCCEEEEECCC
Confidence            54432100                                                  00    1133455555555568


Q ss_pred             CcEEEEECCCCccccccccccC-c-ceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-------------
Q 020461          168 AIVRIWDTETGKLLKESDKETG-H-KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------  232 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~-h-~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------  232 (326)
                      ++|.++|..+.+....+..... . -..+..+.+. +|...++...++.|.+-|.++++.+..+...             
T Consensus       126 ~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~  204 (266)
T 2iwa_A          126 SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD  204 (266)
T ss_dssp             SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT
T ss_pred             CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccc
Confidence            8999999988777665542211 0 0124566776 6654455546789999999999999988643             


Q ss_pred             -cceEEEEeCCCCCeeEEecCCCc
Q 020461          233 -RPVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       233 -~~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                       ...+.++++|+++.+++++....
T Consensus       205 ~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          205 IDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTCS
T ss_pred             cCceEEEEEcCCCCEEEEECCCCC
Confidence             24589999999999888876443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.05  E-value=2.6e-06  Score=69.75  Aligned_cols=236  Identities=9%  Similarity=0.029  Sum_probs=140.4

Q ss_pred             cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecC---CCcceeeeecCCeEEEEEcCccceeceeeeeeee
Q 020461           51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI  127 (326)
Q Consensus        51 h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (326)
                      ....+.++++.++++..++...++.|.+||.. ++... +...   .....+.+.+++.+.++....     ..+.  .+
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~--~~   88 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGA-----NKIG--KL   88 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT-----TEEE--EE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCC-----CeEE--EE
Confidence            34567889999999877777778999999988 55432 3222   223344444545554443211     0111  11


Q ss_pred             ccCCCCCCCceE-EEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE
Q 020461          128 ARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF  206 (326)
Q Consensus       128 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l  206 (326)
                      .  ..   +... .........+..+++++++..+++...++.|..+|.. ++... +. .......+..+++++++...
T Consensus        89 d--~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~-~~~~~~~~~~i~~d~~g~l~  160 (300)
T 2qc5_A           89 S--KK---GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YD-LPNKGSYPAFITLGSDNALW  160 (300)
T ss_dssp             C--TT---SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EE-CSSTTCCEEEEEECTTSSEE
T ss_pred             C--CC---CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-cc-CCCCCCCceeEEECCCCCEE
Confidence            1  11   1111 1222234567889999999888877778899999987 54432 11 11233567899999999877


Q ss_pred             EEEeCCCeEEEeecCCcceEEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecc
Q 020461          207 LTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (326)
Q Consensus       207 ~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (326)
                      ++...++.|..+|. +++... +..   ...+..+++++++...+......  .+..+|. .+....          . .
T Consensus       161 v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~--~i~~~~~-~g~~~~----------~-~  224 (300)
T 2qc5_A          161 FTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGN--KIGRITT-TGEISE----------Y-D  224 (300)
T ss_dssp             EEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTT--EEEEECT-TCCEEE----------E-E
T ss_pred             EEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCC--EEEEEcC-CCcEEE----------E-E
Confidence            77766889999998 555433 322   23577888988775433322222  2333332 111110          0 0


Q ss_pred             ccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ...+...+..++++++|..+++...++.|..++.+.
T Consensus       225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g  260 (300)
T 2qc5_A          225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDN  260 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred             CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCC
Confidence            112345678999999999888777778888876543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.05  E-value=8.5e-09  Score=95.38  Aligned_cols=203  Identities=13%  Similarity=0.026  Sum_probs=116.0

Q ss_pred             CcccceEEEEEcCCCCeEEE-----EeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeee
Q 020461           50 GHNGAVWCCDVSRDSMTLIT-----GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        50 ~h~~~V~~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (326)
                      +|...+..++||||+++|+-     |+...+|++||+.+++.+... ...                              
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~------------------------------  174 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD------------------------------  174 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE------------------------------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC------------------------------
Confidence            45557889999999998762     333467999999988753210 000                              


Q ss_pred             eeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC-------------cEEEEECCCCcccc-ccccccC-
Q 020461          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-------------IVRIWDTETGKLLK-ESDKETG-  189 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~-------------~i~~wd~~~~~~~~-~~~~~~~-  189 (326)
                                            .....++|+ +++.|+.++.+.             .|++|++.++.... .+..... 
T Consensus       175 ----------------------~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~  231 (693)
T 3iuj_A          175 ----------------------VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA  231 (693)
T ss_dssp             ----------------------EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred             ----------------------ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence                                  001124577 777777666653             39999987764321 1222223 


Q ss_pred             cceeeEEEEEcCCCCeEEEEeC----CCeEEEeecCCcc-eEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461          190 HKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLE-LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (326)
Q Consensus       190 h~~~v~~v~~s~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~  264 (326)
                      |......+.++|||++|+....    +..|+++|+.+++ ....+..........++++++.+++....+.         
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~---------  302 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDA---------  302 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTC---------
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCC---------
Confidence            4445678999999998754332    3589999998764 3344433222222225666776665543321         


Q ss_pred             CceeeeEeecccceee--eccccccCcceeEEEECCCCceEEeecC-CC--cEEEeecC
Q 020461          265 AGKFEAKFFDKILQEE--IGGVKGHFGPINALAFNPDGKSFSSGGE-DG--YVRLHHFD  318 (326)
Q Consensus       265 ~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~v~~s~d~~~lat~s~-Dg--~i~l~~~~  318 (326)
                       ....+..++......  ...+..|...+.  .|+|+++.|+.... |+  .|++|+++
T Consensus       303 -~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          303 -PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             -TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             -CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence             111223333222111  122344555555  88999988776655 44  56666554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.04  E-value=7.5e-07  Score=73.38  Aligned_cols=224  Identities=12%  Similarity=0.061  Sum_probs=125.5

Q ss_pred             ccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccC
Q 020461           52 NGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD  130 (326)
Q Consensus        52 ~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (326)
                      ...-.+..|+++++ ++++...++.|..||..+++. ..+.....+..+.+.++..+.+.....       +...+..  
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~-------l~~~d~~--   81 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTK-------FCALNWK--   81 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTE-------EEEEETT--
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCe-------EEEEECC--
Confidence            33456788888654 566666789999999988765 344555566677777766655543221       1111110  


Q ss_pred             CCCCCCceEEEec----cCccceeEEEEecCCcEEEEeeCC---------CcEEEEECCC-CccccccccccCcceeeEE
Q 020461          131 PADQGGESVLILK----GPQGRINRAVWGPLNRTIISAGED---------AIVRIWDTET-GKLLKESDKETGHKKTITS  196 (326)
Q Consensus       131 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~  196 (326)
                          ++.......    .....++.++++|+++++++...+         ..-.+|.+.. ++.. .+.   .+......
T Consensus        82 ----~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~---~~~~~png  153 (297)
T 3g4e_A           82 ----EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYF---DQVDISNG  153 (297)
T ss_dssp             ----TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEE---EEESBEEE
T ss_pred             ----CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEe---eccccccc
Confidence                111111111    123457889999999966654322         2234555432 3221 111   22334678


Q ss_pred             EEEcCCCCeE-EEEeCCCeEEEeec--CCcceE--EEEe----eccceEEEEeCCCCCeeEEecCCCcceeEeecccCce
Q 020461          197 LAKAADGSHF-LTGSLDKSAKLWDA--RTLELI--KTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK  267 (326)
Q Consensus       197 v~~s~~~~~l-~s~s~dg~i~iwd~--~~~~~~--~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~  267 (326)
                      ++++|+++.| ++.+.++.|..||+  .++...  +.+.    ....+..+++++++. ++++...+. .+         
T Consensus       154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~-~v---------  222 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGG-RV---------  222 (297)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTT-EE---------
T ss_pred             eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCC-EE---------
Confidence            9999999866 45566889999987  455432  1121    123567889988875 444322221 12         


Q ss_pred             eeeEeecccceeeeccccccCcceeEEEEC-CCCceEEeec
Q 020461          268 FEAKFFDKILQEEIGGVKGHFGPINALAFN-PDGKSFSSGG  307 (326)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~d~~~lat~s  307 (326)
                         ..|+..+++.+..+..+...+++++|. ||++.|..++
T Consensus       223 ---~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          223 ---IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             ---EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             ---EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence               233333333333344455678999998 8887654333

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.03  E-value=2.4e-07  Score=73.56  Aligned_cols=181  Identities=10%  Similarity=0.061  Sum_probs=123.0

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceE--EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW--CCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~--~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~   89 (326)
                      ....+.|+ ++.++++.+.+|.|+++|+++++.+..+ - .....  .+++.. ++.....-.++.+.+||.++.+.+..
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            34688887 4678888999999999999999988776 2 23333  355532 23334445688999999999887766


Q ss_pred             EecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCc
Q 020461           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (326)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  169 (326)
                      +.......                                                       .+.++++.|+.+..++.
T Consensus       132 i~~~~eGw-------------------------------------------------------GLt~Dg~~L~vSdGs~~  156 (268)
T 3nok_A          132 TRYSGEGW-------------------------------------------------------GLCYWNGKLVRSDGGTM  156 (268)
T ss_dssp             EECSSCCC-------------------------------------------------------CEEEETTEEEEECSSSE
T ss_pred             EeCCCcee-------------------------------------------------------EEecCCCEEEEECCCCE
Confidence            54321000                                                       01233555665556889


Q ss_pred             EEEEECCCCccccccccccCcce---eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec--------------
Q 020461          170 VRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------  232 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------  232 (326)
                      |.++|..+.+....+.... +..   .+..+.+. +|...+..-.+..|.+.|.++++.+..+...              
T Consensus       157 l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~  234 (268)
T 3nok_A          157 LTFHEPDGFALVGAVQVKL-RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE  234 (268)
T ss_dssp             EEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred             EEEEcCCCCeEEEEEEeCC-CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence            9999999887776554321 222   23456665 6655544446889999999999999887642              


Q ss_pred             cceEEEEeCCCCCeeEEecCC
Q 020461          233 RPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       233 ~~~~~~~~s~~~~~~~~~~~~  253 (326)
                      .-.|+++++|..+.++++|..
T Consensus       235 ~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          235 AVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             CCEEEEEECTTTCCEEEEETT
T ss_pred             CceEEEEEcCCCCEEEEeCCC
Confidence            246899999999998888753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=6.4e-07  Score=76.63  Aligned_cols=231  Identities=14%  Similarity=0.097  Sum_probs=132.9

Q ss_pred             cCCCEEE-eecCCCCeEEEecCCC----Ceeeecc------C-cccceEEEEEcCCCCeEEEEeCC------CcEEEEEc
Q 020461           20 KDGDLLF-SCAKDHTPTVWFADNG----ERLGTYR------G-HNGAVWCCDVSRDSMTLITGSAD------QTAKLWNV   81 (326)
Q Consensus        20 ~~~~~l~-s~~~d~~v~iw~~~~~----~~~~~~~------~-h~~~V~~~~~~~~~~~l~s~~~d------~~i~~wd~   81 (326)
                      +++++|+ ++..+++|.++|..+.    +.+++++      . -...-..+...|++ .++++..+      +.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7888655 5667889999998755    4455552      0 01122345667998 77776666      67888888


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .+++.+..+.....                                                 ...--+.+.|+|+++.+
T Consensus       172 ~T~~v~~~~~~~~~-------------------------------------------------~~~~~Yd~~~~p~~~~m  202 (462)
T 2ece_A          172 YSFEPLGKWEIDRG-------------------------------------------------DQYLAYDFWWNLPNEVL  202 (462)
T ss_dssp             TTCCEEEECCSBCT-------------------------------------------------TCCCCCCEEEETTTTEE
T ss_pred             CCCeEEEEEccCCC-------------------------------------------------CccccceEEECCCCCEE
Confidence            88776654431100                                                 00111234567777777


Q ss_pred             EEee-------------------CCCcEEEEECCCCccccccccccCcceeeEEEEE--cCCCCeEEEEe------CCCe
Q 020461          162 ISAG-------------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGS------LDKS  214 (326)
Q Consensus       162 ~s~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~--s~~~~~l~s~s------~dg~  214 (326)
                      ++..                   .+.+|.+||+.+++...++.... .......+.+  +|+++++..++      .+++
T Consensus       203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~  281 (462)
T 2ece_A          203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-ENRMALELRPLHDPTKLMGFINMVVSLKDLSSS  281 (462)
T ss_dssp             EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE
T ss_pred             EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-CCCccceeEeeECCCCCEEEEEEeeeccCCCce
Confidence            7764                   36889999999887666554321 1233445545  99999988777      4568


Q ss_pred             EEEeecCCcce--EEEE--ee-----------------ccceEEEEeCCCCCeeEEecCCCcceeEeeccc-CceeeeEe
Q 020461          215 AKLWDARTLEL--IKTY--VT-----------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR-AGKFEAKF  272 (326)
Q Consensus       215 i~iwd~~~~~~--~~~~--~~-----------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~  272 (326)
                      |.+|....++.  .+.+  ..                 ......+.+|++++.++++-... ..+..+|.. .+...  +
T Consensus       282 V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-d~VavfdV~d~~~~~--l  358 (462)
T 2ece_A          282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-GEVRQYDISNPFKPV--L  358 (462)
T ss_dssp             EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-TEEEEEECSSTTSCE--E
T ss_pred             EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-CEEEEEEecCCCCcE--E
Confidence            87766543321  1111  00                 12356788999999988764322 234444422 11111  1


Q ss_pred             ecccceeeeccc-------ccc--CcceeEEEECCCCceEEeec
Q 020461          273 FDKILQEEIGGV-------KGH--FGPINALAFNPDGKSFSSGG  307 (326)
Q Consensus       273 ~~~~~~~~~~~~-------~~h--~~~v~~v~~s~d~~~lat~s  307 (326)
                      .   ....+++.       +|.  .+.-..+++||||++|..+.
T Consensus       359 v---~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          359 T---GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             E---EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             E---EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            0   01111110       000  11247799999999988777

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.02  E-value=2.2e-07  Score=73.72  Aligned_cols=184  Identities=14%  Similarity=0.126  Sum_probs=123.2

Q ss_pred             ceeEEEEccCCCEEEeecCCC--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLF   88 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~   88 (326)
                      ....+.|+ ++.++.+++.+|  .|+++|.++++.+..+.-.. ......+.++++.|+... .++.+.+||.++.+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            34788998 777788888876  99999999999988775432 333322223344554444 58899999999988776


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCC
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~  168 (326)
                      .+......                                                       ..+.++++.|+....++
T Consensus       122 ti~~~~eG-------------------------------------------------------~glt~dg~~L~~SdGs~  146 (262)
T 3nol_A          122 SFNYDGEG-------------------------------------------------------WGLTHNDQYLIMSDGTP  146 (262)
T ss_dssp             EEECSSCC-------------------------------------------------------CCEEECSSCEEECCSSS
T ss_pred             EEECCCCc-------------------------------------------------------eEEecCCCEEEEECCCC
Confidence            65432100                                                       01123445555555578


Q ss_pred             cEEEEECCCCcccccccccc-Ccc-eeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-------------c
Q 020461          169 IVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------R  233 (326)
Q Consensus       169 ~i~~wd~~~~~~~~~~~~~~-~h~-~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~  233 (326)
                      .|.++|..+.+....+.... +.. ..+..+.+. +|...+..-.++.|.+.|.++++.+..+...             .
T Consensus       147 ~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          147 VLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             EEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred             eEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence            89999999887776654321 111 223346665 6755544446889999999999999888642             1


Q ss_pred             ceEEEEeCCCCCeeEEecCC
Q 020461          234 PVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~~~  253 (326)
                      -.++++++|..+.++++|..
T Consensus       226 vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             CEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEECCC
Confidence            35899999999999888754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.01  E-value=6.3e-08  Score=80.21  Aligned_cols=189  Identities=13%  Similarity=0.080  Sum_probs=114.8

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc---Cc-ccceEEEEEcCCCCeEEE----EeCC---
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GH-NGAVWCCDVSRDSMTLIT----GSAD---   73 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~---~h-~~~V~~~~~~~~~~~l~s----~~~d---   73 (326)
                      .+..+...+..++++++|+++++...++.|.+|+.. +.......   +. ...+..++++++|++.+|    |..+   
T Consensus        80 ~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~  158 (305)
T 3dr2_A           80 VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ  158 (305)
T ss_dssp             EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGG
T ss_pred             EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccc
Confidence            344556678899999999988777677889999875 54322111   11 123567888888887765    2211   


Q ss_pred             ----------CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec
Q 020461           74 ----------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (326)
Q Consensus        74 ----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (326)
                                +.|..||..+++..                                                    ... 
T Consensus       159 ~~~~~~~~~~~~v~~~d~~~g~~~----------------------------------------------------~~~-  185 (305)
T 3dr2_A          159 GCPADPELAHHSVYRLPPDGSPLQ----------------------------------------------------RMA-  185 (305)
T ss_dssp             SCCCCCSSSCEEEEEECSSSCCCE----------------------------------------------------EEE-
T ss_pred             ccccccccCCCeEEEEcCCCCcEE----------------------------------------------------EEe-
Confidence                      12222222222110                                                    000 


Q ss_pred             cCccceeEEEEecCCcEEEEeeCC------CcEEEEECCCCcccccccc-ccCcceeeEEEEEcCCCCeEEEEeCCCeEE
Q 020461          144 GPQGRINRAVWGPLNRTIISAGED------AIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (326)
Q Consensus       144 ~~~~~i~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~  216 (326)
                       .....+.++|+|+++.|+.+...      +.|.+||+..+. +..... ..........++++++|... +++.+ .|.
T Consensus       186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~  261 (305)
T 3dr2_A          186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVC  261 (305)
T ss_dssp             -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEE
T ss_pred             -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEE
Confidence             11234568899999877766554      789999986543 211000 00112334578899999844 44455 499


Q ss_pred             EeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461          217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       217 iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      +||. .++.+..+..+..+..++|+++++.++++..
T Consensus       262 ~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          262 VFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             EECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence            9998 4667777765556888899988877777643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.99  E-value=5.2e-07  Score=83.14  Aligned_cols=199  Identities=12%  Similarity=0.112  Sum_probs=113.1

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeeccCccc----------ce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~----------~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      +..++.++.++.|.-+|.++|+.+=.+..+..          .+ ..+.+  ++..++.++.|+.|..+|.++|+.+..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            55677777888999999999987655433221          11 11222  3557888999999999999999998877


Q ss_pred             ecC-CCc-----ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec---------------------
Q 020461           91 NFD-SPA-----RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---------------------  143 (326)
Q Consensus        91 ~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  143 (326)
                      ... ...     .+.-...++.+++............+...+.      .+++.+-...                     
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~------~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  221 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDA------ETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT  221 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET------TTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEEC------CCCcEEEEecccCCCcccccccccccccccc
Confidence            653 111     1111112344433222110000111111110      0111111111                     


Q ss_pred             ----------cCccceeEEEEecCCcEEEEeeCCCc-------------------EEEEECCCCccccccccccCcc---
Q 020461          144 ----------GPQGRINRAVWGPLNRTIISAGEDAI-------------------VRIWDTETGKLLKESDKETGHK---  191 (326)
Q Consensus       144 ----------~~~~~i~~~~~~~~~~~l~s~~~d~~-------------------i~~wd~~~~~~~~~~~~~~~h~---  191 (326)
                                ++...-..+.++|+...++.+..++.                   |..||.++|+.+-.+... .|.   
T Consensus       222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd  300 (689)
T 1yiq_A          222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWD  300 (689)
T ss_dssp             CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSC
T ss_pred             cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-Cccccc
Confidence                      11111135778898888888887764                   999999999876443211 121   


Q ss_pred             ----eeeEEEEEcCCCC---eEEEEeCCCeEEEeecCCcceEEEE
Q 020461          192 ----KTITSLAKAADGS---HFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       192 ----~~v~~v~~s~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                          ....-.....+|.   .++.++.+|.++++|.++++.+...
T Consensus       301 ~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          301 YTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             ccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence                1222223333554   7889999999999999999987543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.97  E-value=3.1e-07  Score=84.43  Aligned_cols=200  Identities=13%  Similarity=0.069  Sum_probs=114.9

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeeccCccc----------ce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~----------~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      +..|+.++.++.|.-+|.++|+.+=.++....          .+ ..+++  ++..++.++.|+.+..+|..+|+.+..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            45566677788999999999987644432211          01 12233  3567888899999999999999998877


Q ss_pred             ecC-C-----CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec---------------------
Q 020461           91 NFD-S-----PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---------------------  143 (326)
Q Consensus        91 ~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  143 (326)
                      ... .     .....-...++.+++............+...+.      .+++.+....                     
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~------~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~  228 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDA------ETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET------TTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEEC------CCCcEEEEeccCCCCcccccccccccccccc
Confidence            654 1     111111122444443322110000111111111      1111111111                     


Q ss_pred             -----------cCccceeEEEEecCCcEEEEeeCCC-------------------cEEEEECCCCccccccccccCc---
Q 020461          144 -----------GPQGRINRAVWGPLNRTIISAGEDA-------------------IVRIWDTETGKLLKESDKETGH---  190 (326)
Q Consensus       144 -----------~~~~~i~~~~~~~~~~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~h---  190 (326)
                                 +.......++++|++..++.+..++                   +|..+|.++|+..-.+.. ..|   
T Consensus       229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~-~~~d~w  307 (677)
T 1kb0_A          229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE-TPGDNW  307 (677)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCS
T ss_pred             ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec-CCCccc
Confidence                       1111123577889888888776654                   599999999987644321 112   


Q ss_pred             ----ceeeEEEEEcCCC---CeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          191 ----KKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       191 ----~~~v~~v~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                          .....-+....+|   ..++.++.+|.++++|.++++.+..+.
T Consensus       308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence                1122223333467   689999999999999999999987764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.94  E-value=2.7e-07  Score=77.76  Aligned_cols=217  Identities=10%  Similarity=-0.018  Sum_probs=127.5

Q ss_pred             ecCCceeEEEEccCCCEEEeecC-----CCCeEEEecCCCCeeeeccC------cccceEEEEEcCCCCe-EEEEe---C
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRG------HNGAVWCCDVSRDSMT-LITGS---A   72 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~-----d~~v~iw~~~~~~~~~~~~~------h~~~V~~~~~~~~~~~-l~s~~---~   72 (326)
                      +|...+..++|+++++++++-..     ++.|.+||.++++.+..+.-      +...+..+++++++.. .++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45677899999999987665433     57899999999887665532      2234678999976544 45544   6


Q ss_pred             CCcEEEEEccCCcEEEEEecCCCcc--eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcccee
Q 020461           73 DQTAKLWNVETGAQLFTFNFDSPAR--SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (326)
Q Consensus        73 d~~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (326)
                      ++.|.+||+.+++....+..+....  ...+..+...+...                  ..   .+. ...   ....++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~------------------~~---~g~-~~~---~~~~~~  198 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG------------------QP---DGT-VIR---PHLGVN  198 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE------------------CT---TSC-EEC---CCCCEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec------------------cC---CCc-eec---eecccc
Confidence            7899999998887654432110000  01111111110000                  00   000 000   012356


Q ss_pred             EEEEecCCcEEEEeeCCC-cEEEEECC---CCcc-----ccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          151 RAVWGPLNRTIISAGEDA-IVRIWDTE---TGKL-----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       151 ~~~~~~~~~~l~s~~~d~-~i~~wd~~---~~~~-----~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      .++++|+++.|+.+..++ .|..++..   .+..     ...+. ..++......++++++|..+++...++.|..||.+
T Consensus       199 gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~  277 (343)
T 2qe8_A          199 GIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA  277 (343)
T ss_dssp             EEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred             eeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence            799999999888776665 44444421   1110     00010 11233346678999999999999899999999985


Q ss_pred             CcceEEEEee--ccceEEEEeCCCCCeeEEe
Q 020461          222 TLELIKTYVT--ERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       222 ~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~  250 (326)
                      +++.......  ...+..+++.+++...+++
T Consensus       278 ~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~  308 (343)
T 2qe8_A          278 DRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC  308 (343)
T ss_dssp             TTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence            5653222222  2347889998876554444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.93  E-value=6.4e-07  Score=75.74  Aligned_cols=215  Identities=9%  Similarity=-0.015  Sum_probs=127.1

Q ss_pred             CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEEccCCcEEEEEecC--------C
Q 020461           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD--------S   94 (326)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~--------~   94 (326)
                      +|.+.|..+++.+.++..-..+  .+.++||+++++.+.          .+++|.+||+.+++.+..+...        .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7779999999999988755556  699999999988886          3788999999999988887643        2


Q ss_pred             CcceeeeecCCeEEEEEcC---cccee---ceeeeeeeeccCC--------------CCCCCceE-EEeccC---cccee
Q 020461           95 PARSVDFAVGDKLAVITTD---PFMEL---NSAIHVKRIARDP--------------ADQGGESV-LILKGP---QGRIN  150 (326)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~---~~~i~  150 (326)
                      ....+.++++.+.++++..   ....+   +... +..+.-..              ....+... ..+...   .+.+.
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            2456677777665554421   11111   1111 11111000              00000000 001000   00000


Q ss_pred             ------------EEEEecCCcEEEEeeCCCcEEEEECCCCc--ccccccccc----Ccc---eeeEEEEEcCCCCeEEEE
Q 020461          151 ------------RAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKET----GHK---KTITSLAKAADGSHFLTG  209 (326)
Q Consensus       151 ------------~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~----~h~---~~v~~v~~s~~~~~l~s~  209 (326)
                                  -.. .+++..++..+. +.|.+.|..++.  ....+....    .+.   .....+++++++..+..+
T Consensus       204 ~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          204 AQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             EEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence                        002 445555555555 888888886432  111111000    011   111226799999988865


Q ss_pred             eC---------CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461          210 SL---------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       210 s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      ..         ++.+.++|+++.+.+..+........++++|++..++++..
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred             eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEcc
Confidence            43         23566999999999999887778999999999987666554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.91  E-value=2.6e-06  Score=71.16  Aligned_cols=198  Identities=12%  Similarity=0.016  Sum_probs=114.8

Q ss_pred             eEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCC
Q 020461           55 VWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD  133 (326)
Q Consensus        55 V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (326)
                      ..++.|+|+++ ++++...++.|..||..+++.. .+.                                          
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~------------------------------------------   87 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA------------------------------------------   87 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE------------------------------------------
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE------------------------------------------
Confidence            45678888754 5566667788888988765421 110                                          


Q ss_pred             CCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccccc-CcceeeEEEEEcCCCCeEEEEeC-
Q 020461          134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSL-  211 (326)
Q Consensus       134 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~s~-  211 (326)
                                 ....+.++.++|+++++++. .+ .|.+||..+++......... .....+..++++++|.+.++... 
T Consensus        88 -----------~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~  154 (326)
T 2ghs_A           88 -----------LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGR  154 (326)
T ss_dssp             -----------CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred             -----------CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC
Confidence                       01235667788888766654 34 49999988776432111111 12346889999999987665542 


Q ss_pred             -----CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc--Cc-eeeeEeecccceeeecc
Q 020461          212 -----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AG-KFEAKFFDKILQEEIGG  283 (326)
Q Consensus       212 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~--~~-~~~~~~~~~~~~~~~~~  283 (326)
                           .+.|..++  +++...........+.++++|+++.++++..... .+..+|..  .+ ...       ....+..
T Consensus       155 ~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~-~I~~~d~~~~~Gl~~~-------~~~~~~~  224 (326)
T 2ghs_A          155 KAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN-RLMRVPLDARTGLPTG-------KAEVFID  224 (326)
T ss_dssp             TCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC-EEEEEEBCTTTCCBSS-------CCEEEEE
T ss_pred             cCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC-EEEEEEcccccCCccc-------CceEEEE
Confidence                 24555555  4443322222345788999999987766543322 23333321  11 110       0011111


Q ss_pred             ccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          284 VKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       284 ~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      +.........++++++|.++++...++.|..|+.+
T Consensus       225 ~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            12223456789999999988777667778777653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.89  E-value=6.8e-07  Score=82.21  Aligned_cols=237  Identities=14%  Similarity=0.112  Sum_probs=131.8

Q ss_pred             CCCEEEeecCCCCeEEEecCCCCeeeeccCc-c----cceEE-EEEcCCCCeEEEEeC------CCcEEEEEccCCcEEE
Q 020461           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGH-N----GAVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLF   88 (326)
Q Consensus        21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h-~----~~V~~-~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~   88 (326)
                      ++..++.++.|+.+..+|.++|+.+-.+..+ .    ..+.+ ... .++ .++.++.      ++.|..+|..+|+.+.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKG-KVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECC-EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            3567888889999999999999987665543 1    12221 111 133 4555443      7999999999999988


Q ss_pred             EEecCCCcc---------------------------------eeeeecCCeEEEEEc-Cccc-e------------ecee
Q 020461           89 TFNFDSPAR---------------------------------SVDFAVGDKLAVITT-DPFM-E------------LNSA  121 (326)
Q Consensus        89 ~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~-~~~~-~------------~~~~  121 (326)
                      .+....+..                                 ...+.+....+.+.. ++.. .            ....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            776432210                                 112233333333222 2100 0            0000


Q ss_pred             eeeeeeccCCCCCCCceEEEecc--Cc-------cceeEEEEecCC---cEEEEeeCCCcEEEEECCCCcccccccccc-
Q 020461          122 IHVKRIARDPADQGGESVLILKG--PQ-------GRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKET-  188 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-  188 (326)
                      +..    .+.  .+++....+..  |.       ....-+....+|   +.++.++.+|.+.++|.++|+.+....... 
T Consensus       285 v~A----lD~--~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~  358 (677)
T 1kb0_A          285 IVA----LDP--DTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV  358 (677)
T ss_dssp             EEE----ECT--TTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred             EEE----EEC--CCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence            111    111  12333333221  11       111222233356   578899999999999999998764432110 


Q ss_pred             -------Cccee------------------------eEEEEEcCCCCeEEEEeCC-------------------------
Q 020461          189 -------GHKKT------------------------ITSLAKAADGSHFLTGSLD-------------------------  212 (326)
Q Consensus       189 -------~h~~~------------------------v~~v~~s~~~~~l~s~s~d-------------------------  212 (326)
                             .....                        -..++++|++.++++...+                         
T Consensus       359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  438 (677)
T 1kb0_A          359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT  438 (677)
T ss_dssp             SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred             CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence                   00000                        1256788888888775432                         


Q ss_pred             ------------------CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce
Q 020461          213 ------------------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK  267 (326)
Q Consensus       213 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~  267 (326)
                                        |.|..||+++++.+-++....+.....+...+..++++. .++ .+..+|.+.++
T Consensus       439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~-~dg-~l~a~D~~tG~  509 (677)
T 1kb0_A          439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT-ADG-RLVAYHAATGE  509 (677)
T ss_dssp             TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-TTS-EEEEEETTTCC
T ss_pred             ccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC-CCC-cEEEEECCCCc
Confidence                              789999999999988887665555555666666666653 222 33444544443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.86  E-value=1.8e-06  Score=67.90  Aligned_cols=184  Identities=11%  Similarity=0.055  Sum_probs=120.4

Q ss_pred             CceeEEEEccCCCEEEeecCC--CCeEEEecCCCCeeeeccCcccc-eEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKD--HTPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d--~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      .....+.|+. +.++.+++.+  ..|+.+|.++++.+....-.... -..+++.. ++.....-.++.+.+||.++.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEE
Confidence            3467899987 6777777775  48999999999998776543221 12344432 333444557889999999998877


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  167 (326)
                      ..+......                                                       ..+.++++.|+.+..+
T Consensus        99 ~ti~~~~~G-------------------------------------------------------wglt~dg~~L~vSdgs  123 (243)
T 3mbr_X           99 ARFRYPGEG-------------------------------------------------------WALTSDDSHLYMSDGT  123 (243)
T ss_dssp             EEEECSSCC-------------------------------------------------------CEEEECSSCEEEECSS
T ss_pred             EEEeCCCCc-------------------------------------------------------eEEeeCCCEEEEECCC
Confidence            665432100                                                       0112234445545558


Q ss_pred             CcEEEEECCCCccccccccccCcce---eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec------------
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKK---TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------------  232 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------  232 (326)
                      +.|.++|..+.+....+.... +..   .+..+.+. +|...+..-.+..|.+.|.++++.+..+...            
T Consensus       124 ~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~  201 (243)
T 3mbr_X          124 AVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDS  201 (243)
T ss_dssp             SEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCT
T ss_pred             CeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCC
Confidence            889999999887766554321 222   23445544 5654444446789999999999998887632            


Q ss_pred             --cceEEEEeCCCCCeeEEecCC
Q 020461          233 --RPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       233 --~~~~~~~~s~~~~~~~~~~~~  253 (326)
                        .-.|+++++|..+.++++|..
T Consensus       202 ~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          202 TNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             TSSCEEEEEEETTTTEEEEEETT
T ss_pred             cCCceEEEEEcCCCCEEEEECCC
Confidence              136899999999998888754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.80  E-value=2.5e-05  Score=66.47  Aligned_cols=265  Identities=10%  Similarity=0.103  Sum_probs=136.5

Q ss_pred             CCCEEEeecCCCCeEEEecCCCCeeeeccCc---------ccceE-EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGH---------NGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h---------~~~V~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      ++..++.++.++.|..+|.++|+.+-.+...         ...+. .+..  ++..++.++.++.|..+|.++++.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            3567777888899999999999876444321         12232 2222  3557888889999999999999988776


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc-----eeEEEEecCCcEEEEee
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR-----INRAVWGPLNRTIISAG  165 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~s~~  165 (326)
                      .........-...++.+.+...+..+      ...+.      ..++...........     .......  +..++.+.
T Consensus       130 ~~~~~~~~~p~~~~~~v~v~~~~g~l------~~~d~------~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~  195 (376)
T 3q7m_A          130 KVAGEALSRPVVSDGLVLIHTSNGQL------QALNE------ADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG  195 (376)
T ss_dssp             ECSSCCCSCCEEETTEEEEECTTSEE------EEEET------TTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC
T ss_pred             eCCCceEcCCEEECCEEEEEcCCCeE------EEEEC------CCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc
Confidence            65433322212234444443322211      11100      111222111111000     0111111  35677788


Q ss_pred             CCCcEEEEECCCCccccccccccCcc----eeeEEEEEcC--CCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEE
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHK----KTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~----~~v~~v~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  239 (326)
                      .++.|..+|..+++..-.........    ..+..+...|  .+..++.++.++.+..+|.++++.+....... .....
T Consensus       196 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~  274 (376)
T 3q7m_A          196 DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFI  274 (376)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCce
Confidence            89999999999887654332110000    0000011111  24578888889999999999998876654322 22222


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      .  .++.++++...+  .+..+|...+..   .|....      .  ....+.....  .+..|..++.+|.|..++...
T Consensus       275 ~--~~~~l~~~~~~g--~l~~~d~~tG~~---~w~~~~------~--~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          275 V--DGNRIYLVDQND--RVMALTIDGGVT---LWTQSD------L--LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             E--ETTEEEEEETTC--CEEEEETTTCCE---EEEECT------T--TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             E--ECCEEEEEcCCC--eEEEEECCCCcE---EEeecc------c--CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence            2  345555544322  233445444432   222110      0  0011111222  245666777788887766544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.77  E-value=5.4e-06  Score=70.98  Aligned_cols=164  Identities=15%  Similarity=0.087  Sum_probs=101.6

Q ss_pred             EEEecCCcEEEEeeCC------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---------------
Q 020461          152 AVWGPLNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---------------  210 (326)
Q Consensus       152 ~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s---------------  210 (326)
                      +...|++ .++++..+      +.|.++|.++++.+.......+-...-..+-|+|+++.+++..               
T Consensus       143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred             eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence            4556777 66665555      7899999999888776643222222234577899999888885               


Q ss_pred             ----CCCeEEEeecCCcceEEEEeec---cceEEEE--eCCCCCeeEEecC-----CCc-ceeEeecccCceeeeE-eec
Q 020461          211 ----LDKSAKLWDARTLELIKTYVTE---RPVNAVT--MSPLLDHVVLGGG-----QDA-SAVTTTDHRAGKFEAK-FFD  274 (326)
Q Consensus       211 ----~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~--~s~~~~~~~~~~~-----~~~-~~~~~~d~~~~~~~~~-~~~  274 (326)
                          .+.+|.+||+.+++.++++...   .....+.  ++|++...+++..     .+. ..+..+|.  +.+... ..+
T Consensus       222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vId  299 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIE  299 (462)
T ss_dssp             HHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEE
T ss_pred             hhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEe
Confidence                3789999999998888887654   2334444  4999998877654     332 22222332  332221 111


Q ss_pred             ccceeeeccc-------cccCcceeEEEECCCCceEEeecC-CCcEEEeecC
Q 020461          275 KILQEEIGGV-------KGHFGPINALAFNPDGKSFSSGGE-DGYVRLHHFD  318 (326)
Q Consensus       275 ~~~~~~~~~~-------~~h~~~v~~v~~s~d~~~lat~s~-Dg~i~l~~~~  318 (326)
                      .........+       .+-......|.+||||++|..+.. .+.|+++++.
T Consensus       300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            1111100000       011234688999999999866655 7899999885

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.76  E-value=2.2e-06  Score=71.36  Aligned_cols=265  Identities=14%  Similarity=0.081  Sum_probs=135.8

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      +.++...+++.+++ ++.+  +..+|. +++.+..+...........+.  +..++.++.++.+..+|.+ ++.......
T Consensus        62 ~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~  134 (330)
T 3hxj_A           62 ECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT  134 (330)
T ss_dssp             EECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred             ccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC
Confidence            34555566666444 4444  777775 565544444333333333333  4467778888899999988 776655543


Q ss_pred             CCC-cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461           93 DSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (326)
Q Consensus        93 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  171 (326)
                      ... ........++.+.+...+..      +....    .  . +............+..+...+++...+..   +.|.
T Consensus       135 ~~~~~~~~~~~~~g~l~vgt~~~~------l~~~d----~--~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~  198 (330)
T 3hxj_A          135 KKAIYATPIVSEDGTIYVGSNDNY------LYAIN----P--D-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVY  198 (330)
T ss_dssp             SSCCCSCCEECTTSCEEEECTTSE------EEEEC----T--T-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEE
T ss_pred             CCceeeeeEEcCCCEEEEEcCCCE------EEEEC----C--C-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEE
Confidence            322 22233333444444332111      11110    0  1 22333333334455666676777655443   7799


Q ss_pred             EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-ceEEEEeCCCCCeeEEe
Q 020461          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       172 ~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~  250 (326)
                      .+| .+++......   .....+.++..+++| .+..++.++.|..+|. +++.+..+.... ....+...+++ .++++
T Consensus       199 ~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~  271 (330)
T 3hxj_A          199 AIN-PDGTEKWNFY---AGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFG  271 (330)
T ss_dssp             EEC-TTSCEEEEEC---CSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEE
T ss_pred             EEC-CCCcEEEEEc---cCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEe
Confidence            999 6665543322   123457778888887 4666777888888885 455555554322 22334444333 34444


Q ss_pred             cCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCcee
Q 020461          251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN  323 (326)
Q Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~~~  323 (326)
                      ...++  +..+|. .+..   +|.         .......+.++...++|..++ |+.+|.+++...+.+.+.
T Consensus       272 t~~gg--l~~~d~-~g~~---~~~---------~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~~~~  328 (330)
T 3hxj_A          272 SYDGH--LYAINP-DGTE---KWN---------FETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEHHHH  328 (330)
T ss_dssp             CTTCE--EEEECT-TSCE---EEE---------EECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC------
T ss_pred             cCCCC--EEEECC-CCcE---EEE---------EEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccccccc
Confidence            33222  223332 2221   111         111234567788877777554 888999999777665543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.70  E-value=1.2e-08  Score=86.84  Aligned_cols=181  Identities=15%  Similarity=0.106  Sum_probs=83.0

Q ss_pred             CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe
Q 020461           63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (326)
Q Consensus        63 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (326)
                      ++..+++++.|+.|..||..+|+.+..+.. .+..                                             
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~---------------------------------------------   41 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL---------------------------------------------   41 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC---------------------------------------------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce---------------------------------------------
Confidence            467899999999999999999988765432 1100                                             


Q ss_pred             ccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeE-EEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                              +..+.+++..+++++.|+.|..||.++++.+......  ....+. +.... ++..+++++.|+.++.||.+
T Consensus        42 --------s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~--~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~  110 (369)
T 2hz6_A           42 --------QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT--IPELVQASPCRS-SDGILYMGKKQDIWYVIDLL  110 (369)
T ss_dssp             --------CCC-----CCEEECTTTCCEEEC-----CCSEECSCC--HHHHHTTCSCC------CCCCEEEEEEEEECCC
T ss_pred             --------ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc--CccccccCceEe-cCCEEEEEeCCCEEEEEECC
Confidence                    0011123456777789999999999888764333211  011111 11111 34568889999999999999


Q ss_pred             CcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCC-
Q 020461          222 TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG-  300 (326)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~-  300 (326)
                      +++.+..+....   ...++|.++.++++.. + ..+..+|.+.+...   |....       .    .....+++++. 
T Consensus       111 tG~~~w~~~~~~---~~~~~p~~~~v~~~~~-d-g~v~a~d~~tG~~~---W~~~~-------~----~~~~~~~~~~~~  171 (369)
T 2hz6_A          111 TGEKQQTLSSAF---ADSLSPSTSLLYLGRT-E-YTITMYDTKTRELR---WNATY-------F----DYAASLPEDDVD  171 (369)
T ss_dssp             -------------------------EEEEEE-E-EEEECCCSSSSSCC---CEEEE-------E----EECCBCCCCCTT
T ss_pred             CCcEEEEecCCC---cccccccCCEEEEEec-C-CEEEEEECCCCCEE---EeEec-------c----cccCccccCCcc
Confidence            999887765432   2344565555555432 2 22344454444321   11110       0    01122333332 


Q ss_pred             --ceEEeecCCCcEEEeecCC
Q 020461          301 --KSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       301 --~~lat~s~Dg~i~l~~~~~  319 (326)
                        ..+++++.||.|..|+...
T Consensus       172 ~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          172 YKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             CCCCEEEEETSCEEEEECTTT
T ss_pred             ccceEEEECCCCEEEEEECCC
Confidence              4566677888888876543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.69  E-value=1.2e-05  Score=68.43  Aligned_cols=189  Identities=13%  Similarity=0.120  Sum_probs=105.1

Q ss_pred             CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcc---
Q 020461           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR---   97 (326)
Q Consensus        21 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~---   97 (326)
                      ++..++.++.++.+..+|.++|+.+-...............  +..++.++.++.+..+|..+++.+.......+..   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            45667778889999999999998765544332221122222  3477788899999999999999887766543321   


Q ss_pred             --eeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCc--c-----ceeEEEEec--CCcEEEEeeC
Q 020461           98 --SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ--G-----RINRAVWGP--LNRTIISAGE  166 (326)
Q Consensus        98 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~i~~~~~~~--~~~~l~s~~~  166 (326)
                        ..-...++.+.+...+..      +...+.      ..++.........  +     .+..+.-.|  .+..++.++.
T Consensus       180 ~~~~~~~~~~~v~~g~~~g~------l~~~d~------~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~  247 (376)
T 3q7m_A          180 GESAPTTAFGAAVVGGDNGR------VSAVLM------EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY  247 (376)
T ss_dssp             CCCCCEEETTEEEECCTTTE------EEEEET------TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT
T ss_pred             CCCCcEEECCEEEEEcCCCE------EEEEEC------CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec
Confidence              111112333333221111      100000      0111111111000  0     000000011  2456777888


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      ++.+..+|.++++..-....     .....+..  ++..+..++.++.|..+|.++++.+....
T Consensus       248 ~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          248 NGNLTALDLRSGQIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             TSCEEEEETTTCCEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             CcEEEEEECCCCcEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence            99999999998876543321     11223333  35678888899999999999998876654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.66  E-value=1.2e-06  Score=77.60  Aligned_cols=215  Identities=9%  Similarity=-0.040  Sum_probs=126.4

Q ss_pred             cCCCEEEeec-CCCCeEEEecCCCCeeeeccCc-ccceEEEEE-c-CCCCeEEEEe------------------CCCcEE
Q 020461           20 KDGDLLFSCA-KDHTPTVWFADNGERLGTYRGH-NGAVWCCDV-S-RDSMTLITGS------------------ADQTAK   77 (326)
Q Consensus        20 ~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h-~~~V~~~~~-~-~~~~~l~s~~------------------~d~~i~   77 (326)
                      +||++|+.+. .++.|.+-|+.+.++...+.-- ......+++ + |++++++.++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            4888777655 4567889999999887744321 234667777 5 8999988885                  245788


Q ss_pred             EEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecC
Q 020461           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (326)
Q Consensus        78 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (326)
                      +.|..+.+....+........+.++++.+.++++.........   +.....    .....+.+..-..    ...+.++
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~---i~~~~~----~~~d~v~V~~~~~----~~~~v~~  247 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMT---LPEMTA----AEMDHIVVFNIAE----IEKAIAA  247 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSS---HHHHTC----CSEEEEEEEEHHH----HHHHHHH
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcc---hhhccc----cccceEEEeeccc----eeEeccC
Confidence            8999988877766553334455666666666554432100000   000000    0000011110000    0012234


Q ss_pred             CcEEEEeeCCCcEEEEECCC--Ccc-ccccccccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcc---------
Q 020461          158 NRTIISAGEDAIVRIWDTET--GKL-LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE---------  224 (326)
Q Consensus       158 ~~~l~s~~~d~~i~~wd~~~--~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~---------  224 (326)
                      |+....    +.|.+.|.++  ++. ...+.    -.....++.++|||+++++++ .+.+|.++|+++.+         
T Consensus       248 Gk~~~i----~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~  319 (595)
T 1fwx_A          248 GDYQEL----NGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP  319 (595)
T ss_dssp             TCSEEE----TTEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred             CCeeEE----CcEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence            443332    4599999987  433 22221    123467899999999877665 58899999999763         


Q ss_pred             ---eEEEEeeccceEEEEeCCCCCeeEEecCCC
Q 020461          225 ---LIKTYVTERPVNAVTMSPLLDHVVLGGGQD  254 (326)
Q Consensus       225 ---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  254 (326)
                         .+.+.....-...++|++++ .++++-.-+
T Consensus       320 ~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld  351 (595)
T 1fwx_A          320 RSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD  351 (595)
T ss_dssp             GGGEEECCBCCSCEEEEEECTTS-EEEEEETTT
T ss_pred             ccceEEEcCCCCCcceEEECCCC-eEEEEEecC
Confidence               34445555668889999999 665554333

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.66  E-value=4.2e-05  Score=63.56  Aligned_cols=250  Identities=10%  Similarity=-0.000  Sum_probs=133.3

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC--------------------cccceEEEEEcC-CC
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--------------------HNGAVWCCDVSR-DS   64 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~--------------------h~~~V~~~~~~~-~~   64 (326)
                      +.+.......+++++++++++++..++.|..|+..++... .+..                    .......+++.+ ++
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            4444455678899999997888888899999987765432 2210                    112467888987 55


Q ss_pred             CeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        65 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      + |+.+...+.+..+|..+++........         .                                +       .
T Consensus        93 ~-l~v~d~~~~i~~~d~~~g~~~~~~~~~---------~--------------------------------~-------~  123 (322)
T 2fp8_A           93 Q-LYIVDCYYHLSVVGSEGGHATQLATSV---------D--------------------------------G-------V  123 (322)
T ss_dssp             E-EEEEETTTEEEEECTTCEECEEEESEE---------T--------------------------------T-------E
T ss_pred             c-EEEEECCCCEEEEeCCCCEEEEecccC---------C--------------------------------C-------C
Confidence            4 555554455777776544321100000         0                                0       0


Q ss_pred             CccceeEEEEec-CCcEEEEee-----------------CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE
Q 020461          145 PQGRINRAVWGP-LNRTIISAG-----------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF  206 (326)
Q Consensus       145 ~~~~i~~~~~~~-~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l  206 (326)
                      .....+.+++.| ++...++-.                 .++.|..||..+++......    .......+++++++..|
T Consensus       124 ~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----~~~~p~gia~~~dg~~l  199 (322)
T 2fp8_A          124 PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK----ELHVPGGAEVSADSSFV  199 (322)
T ss_dssp             ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE----EESCCCEEEECTTSSEE
T ss_pred             cccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc----CCccCcceEECCCCCEE
Confidence            011234456666 665544432                 23678888876654321111    11234578999999865


Q ss_pred             EEE-eCCCeEEEeecCCcc--eEEEEe-eccceEEEEeCCCCCeeEEecCC--------CcceeEeecccCceeeeEeec
Q 020461          207 LTG-SLDKSAKLWDARTLE--LIKTYV-TERPVNAVTMSPLLDHVVLGGGQ--------DASAVTTTDHRAGKFEAKFFD  274 (326)
Q Consensus       207 ~s~-s~dg~i~iwd~~~~~--~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~  274 (326)
                      ..+ +.++.|..+++....  ....+. ... ...+++.+++...++....        ....+..+|.. +... ..  
T Consensus       200 yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~-~~--  274 (322)
T 2fp8_A          200 LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL-EV--  274 (322)
T ss_dssp             EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEE-EE--
T ss_pred             EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEE-EE--
Confidence            544 567899999987421  111111 223 7788888888643332220        01122233321 1111 11  


Q ss_pred             ccceeeecccccc-CcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          275 KILQEEIGGVKGH-FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       275 ~~~~~~~~~~~~h-~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                            +....+. ...+..+++ .++.++++....+.|..++.+..+
T Consensus       275 ------~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          275 ------IPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             ------EECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             ------EECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence                  1111111 234666777 467777777778888888776543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.65  E-value=1.8e-06  Score=79.53  Aligned_cols=217  Identities=15%  Similarity=0.108  Sum_probs=123.0

Q ss_pred             eEEEEccCCCEEEeecCCCC-------------------eEEEecCCCCeeeeccC--cc-------cceEEEEEcCCCC
Q 020461           14 TYLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM   65 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~-------------------v~iw~~~~~~~~~~~~~--h~-------~~V~~~~~~~~~~   65 (326)
                      ..++++|++.+++.+..++.                   |.-+|.++|+.+=.++.  |.       .+........+++
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            36788999998888888764                   88899999988755543  21       1222222223554


Q ss_pred             ---eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe
Q 020461           66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (326)
Q Consensus        66 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (326)
                         .++.++.+|.+.++|..+|+.+....+........+......             .+.........  ..+......
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~-------------pi~~~~~~~~~--~~~~~~~~~  382 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR-------------PILDEENAAYW--KNGKRNLVT  382 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTE-------------EEECHHHHCTT--TSSSCEEES
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCC-------------cccchhhcccc--CCCCeeEeC
Confidence               788999999999999999998876554321110000000000             00000000000  000111111


Q ss_pred             ccCccc--eeEEEEecCCcEEEEee---------------------------------------------CCCcEEEEEC
Q 020461          143 KGPQGR--INRAVWGPLNRTIISAG---------------------------------------------EDAIVRIWDT  175 (326)
Q Consensus       143 ~~~~~~--i~~~~~~~~~~~l~s~~---------------------------------------------~d~~i~~wd~  175 (326)
                      .+..+.  -..++++|+.+.++...                                             .+|+|..||+
T Consensus       383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~  462 (689)
T 1yiq_A          383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP  462 (689)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred             CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence            111110  11245555555444331                                             1478999999


Q ss_pred             CCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccc--eEEEEeCCCCCeeEE
Q 020461          176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLLDHVVL  249 (326)
Q Consensus       176 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~  249 (326)
                      ++++..-....    ...+..-.+...+..++.|+.||.++.||.++++.+.++.....  ..-+.+..++...++
T Consensus       463 ~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          463 VKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             TTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            99987654321    12233334455677899999999999999999999988865422  223555667765443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.64  E-value=9.3e-06  Score=71.95  Aligned_cols=102  Identities=19%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             eEEEeecCC--cce-EEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCce--eeeEeecccceeeeccccccC
Q 020461          214 SAKLWDART--LEL-IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK--FEAKFFDKILQEEIGGVKGHF  288 (326)
Q Consensus       214 ~i~iwd~~~--~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~h~  288 (326)
                      .|.+.|.++  +.. +..+.......++.++|++..+++++..+.. +..+|.....  +.-++ +. ....+..+. -.
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l-~~-~~~v~~~v~-vG  330 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENA-DP-RSAVVAEPE-LG  330 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCC-CG-GGGEEECCB-CC
T ss_pred             cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCe-EEEEECccccccccccc-Cc-ccceEEEcC-CC
Confidence            488889887  545 5666666788899999999998887654332 2333332110  00000 00 000011111 11


Q ss_pred             cceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          289 GPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       289 ~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      ...+.++|+|||....+.-.|++|..|+++.
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            2467899999995566777899999999876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.61  E-value=1.6e-05  Score=63.67  Aligned_cols=208  Identities=14%  Similarity=0.074  Sum_probs=125.4

Q ss_pred             eeeeccCccc--ceEEEEEcCCCCeEEEEeC--CCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceec
Q 020461           44 RLGTYRGHNG--AVWCCDVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN  119 (326)
Q Consensus        44 ~~~~~~~h~~--~V~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (326)
                      .+.++. |..  ....++|++++.+.++.+.  +++|++.|+.+++.+..+........                     
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg---------------------   68 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG---------------------   68 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE---------------------
T ss_pred             EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce---------------------
Confidence            444553 332  3678999998755555553  57999999999987655432110000                     


Q ss_pred             eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                                                    ..+.+.. +...++...++.+.++|..+.+.+.++...   ...  ...+
T Consensus        69 ------------------------------eGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g---~~~--g~gl  112 (266)
T 2iwa_A           69 ------------------------------EGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ---MKD--GWGL  112 (266)
T ss_dssp             ------------------------------EEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECC---SSS--CCEE
T ss_pred             ------------------------------EEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECC---CCC--eEEE
Confidence                                          0011111 233445566889999999988877765422   111  2334


Q ss_pred             cCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee
Q 020461          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (326)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (326)
                      ++||..++.+..++.|.++|.++.+.+..+....      .++.+.+. ++ .+++.... ...+...|...+.....+ 
T Consensus       113 t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~-~~~V~vID~~tg~V~~~I-  188 (266)
T 2iwa_A          113 ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQ-TDCIARISAKDGTLLGWI-  188 (266)
T ss_dssp             EECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETT-SSEEEEEETTTCCEEEEE-
T ss_pred             EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCC-CCeEEEEECCCCcEEEEE-
Confidence            5677777777778999999999999888876432      35677776 44 45544322 334555566555432221 


Q ss_pred             cccceeeeccc------ccc--CcceeEEEECCCCc-eEEeecCCCcEEEeecCC
Q 020461          274 DKILQEEIGGV------KGH--FGPINALAFNPDGK-SFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       274 ~~~~~~~~~~~------~~h--~~~v~~v~~s~d~~-~lat~s~Dg~i~l~~~~~  319 (326)
                      +.      ..+      ..+  ....+.|+|+|+++ .++|+...+++...++.+
T Consensus       189 ~~------~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          189 LL------PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EC------HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EC------CCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            11      111      001  12458999999976 578887888888766654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.55  E-value=0.00013  Score=58.86  Aligned_cols=220  Identities=10%  Similarity=0.030  Sum_probs=123.0

Q ss_pred             CceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~   88 (326)
                      ..+..++|+++++ ++++-..++.|..++...+.....+...-.....+++++++..++.+ ...+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            3457899999655 55566667899999987654433333222456889999876555544 456789999987543322


Q ss_pred             EEecC-CCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEee
Q 020461           89 TFNFD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAG  165 (326)
Q Consensus        89 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~  165 (326)
                      ..... .....+.+.+ +..+.++.....   ...+  .....+   ..... ..........+.++++|++..| ++-.
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~---~~~I--~~~~~d---g~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRD---NPKI--ETSHMD---GTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSS---SCEE--EEEETT---SCCCE-EEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCC---CcEE--EEEecC---CCCcE-EEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence            22211 2334556666 344444432100   0111  111111   11111 1112233456789999987655 4555


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc--ceEEEEeCCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSPL  243 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~s~~  243 (326)
                      ..+.|..+|........... .   ......++.. ++..+++....+.|..+|..+++.+..+....  ....+++.|+
T Consensus       187 ~~~~I~~~~~~g~~~~~~~~-~---~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          187 GTHRAECLNPAQPGRRKVLE-G---LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             TTTEEEEEETTEEEEEEEEE-C---CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCEEEEEecCCCceEEEec-C---CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            67899999987543222111 1   1223455554 34444444456899999999998888775432  3555666554


Q ss_pred             C
Q 020461          244 L  244 (326)
Q Consensus       244 ~  244 (326)
                      +
T Consensus       262 ~  262 (267)
T 1npe_A          262 Q  262 (267)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.54  E-value=5.1e-05  Score=60.20  Aligned_cols=201  Identities=9%  Similarity=0.105  Sum_probs=115.4

Q ss_pred             eeeeccCcc-cceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceece
Q 020461           44 RLGTYRGHN-GAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS  120 (326)
Q Consensus        44 ~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (326)
                      .+.++.... .....+.|+ ++.+..+.+.+|  .|+.+|+++++.+.....+......                     
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge---------------------   90 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE---------------------   90 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE---------------------
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcccee---------------------
Confidence            455553322 346788998 677777887766  8999999999887655432110000                     


Q ss_pred             eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                                                      -..+++. .......++.+.++|..+.+.+.++... +     ....+
T Consensus        91 --------------------------------Git~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-~-----eG~gl  132 (262)
T 3nol_A           91 --------------------------------GISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-G-----EGWGL  132 (262)
T ss_dssp             --------------------------------EEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS-S-----CCCCE
T ss_pred             --------------------------------EEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC-C-----CceEE
Confidence                                            0011122 2334456889999999999888776532 1     12233


Q ss_pred             cCCCCeEEEEeCCCeEEEeecCCcceEEEEeec------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee
Q 020461          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (326)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (326)
                      .+|+..|+....++.|.++|.++.+.+..+...      ..++.+.+. ++ .+++... ....+...|...+.....+-
T Consensus       133 t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w-~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          133 THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVW-QTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET-TSSEEEEECTTTCBEEEEEE
T ss_pred             ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEc-cCCeEEEEECCCCcEEEEEE
Confidence            356777777666888999999999998887642      224556665 34 4554432 33345566766665433221


Q ss_pred             cccceeeeccccccCcceeEEEECCCCceEEeec
Q 020461          274 DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG  307 (326)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s  307 (326)
                      ......+......-..-.+.|||+|+++.|...+
T Consensus       210 ~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          210 LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            1100000000000112458899999877654444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.45  E-value=0.00027  Score=64.98  Aligned_cols=205  Identities=15%  Similarity=0.129  Sum_probs=110.6

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeeccCccc----------ce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEE
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~----------~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~   90 (326)
                      +..++.++.++.|.-+|.++|+.+=.++....          .+ ..+++  .+..++.++.|+.|..+|..+|+.+..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            45566677788888899999987644432211          01 11222  2457788889999999999999998877


Q ss_pred             ecCCCc-----ceeeeecCCeEEEEEcCcc------c---eeceeeeeeeeccCCCCCCC----ceE------------E
Q 020461           91 NFDSPA-----RSVDFAVGDKLAVITTDPF------M---ELNSAIHVKRIARDPADQGG----ESV------------L  140 (326)
Q Consensus        91 ~~~~~~-----~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~----~~~------------~  140 (326)
                      ....+.     ...-...++.+++......      +   ........|.....+.....    ..+            .
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            653211     0000112334333222110      0   00011112221110000000    000            0


Q ss_pred             EeccCccceeEEEEecCCcEEEEeeCCC-------------------cEEEEECCCCccccccccccCcc-------eee
Q 020461          141 ILKGPQGRINRAVWGPLNRTIISAGEDA-------------------IVRIWDTETGKLLKESDKETGHK-------KTI  194 (326)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~h~-------~~v  194 (326)
                      ...++......++++|....++.+..++                   .|..+|.++|+..-..... .|.       .+.
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~  302 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQI  302 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-CCccccccCCCCc
Confidence            0001111123467888888888777665                   3999999999876443321 121       222


Q ss_pred             EEEEEcCCCC---eEEEEeCCCeEEEeecCCcceEEEE
Q 020461          195 TSLAKAADGS---HFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       195 ~~v~~s~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      ....+..+|+   .++.++.+|.++++|.++++.+...
T Consensus       303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            2223334564   6899999999999999999988544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.42  E-value=1.2e-05  Score=66.90  Aligned_cols=201  Identities=12%  Similarity=0.117  Sum_probs=109.7

Q ss_pred             EEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCC
Q 020461           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP   95 (326)
Q Consensus        16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~   95 (326)
                      .....++. |..++.++.+..|| .+++....+......+.++...+++. ++.++.+  +..+|. +++....+.....
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~   98 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKA   98 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCC
Confidence            34445565 55677788999999 88887766655555667777766665 4445554  778886 4443222211111


Q ss_pred             c-ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEE
Q 020461           96 A-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (326)
Q Consensus        96 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd  174 (326)
                      . ....+. ++.+.+...+..      +..  +  +.  . +........+...+..+...+++. ++.++.++.|..+|
T Consensus        99 ~~~~~~~~-~~~l~v~t~~~~------l~~--~--d~--~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d  163 (330)
T 3hxj_A           99 IVSDFTIF-EDILYVTSMDGH------LYA--I--NT--D-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAIN  163 (330)
T ss_dssp             --CCEEEE-TTEEEEECTTSE------EEE--E--CT--T-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEEC
T ss_pred             cccCceEE-CCEEEEEecCCE------EEE--E--cC--C-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEEC
Confidence            1 111111 333333322211      110  1  00  1 222222333333455566666665 55577789999999


Q ss_pred             CCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCC
Q 020461          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLD  245 (326)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~  245 (326)
                      .. ++......   .....+.++..++++...+ ++  +.|..+| .+++.+..+... ..+.++...+++.
T Consensus       164 ~~-g~~~~~~~---~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~  227 (330)
T 3hxj_A          164 PD-GTEKWRFK---TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT  227 (330)
T ss_dssp             TT-SCEEEEEE---CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC
T ss_pred             CC-CCEeEEEe---cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe
Confidence            88 66543332   1234466677777776544 44  7899999 677666555432 3456666666653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.36  E-value=0.00013  Score=66.99  Aligned_cols=71  Identities=11%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             EEEEcc-CCCEEEeecCCC-----------CeEEEecCCCCeee--eccC-cccceEEEEEcCCCCeEEEEe-CCCcEEE
Q 020461           15 YLKYNK-DGDLLFSCAKDH-----------TPTVWFADNGERLG--TYRG-HNGAVWCCDVSRDSMTLITGS-ADQTAKL   78 (326)
Q Consensus        15 ~~~~s~-~~~~l~s~~~d~-----------~v~iw~~~~~~~~~--~~~~-h~~~V~~~~~~~~~~~l~s~~-~d~~i~~   78 (326)
                      ++++.+ ++++++.|+.+.           .+.+||..+++...  .+.. +.....++++..+++.++.|| .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888888887543           57789988876532  2211 223334466778899888888 4568999


Q ss_pred             EEccCCc
Q 020461           79 WNVETGA   85 (326)
Q Consensus        79 wd~~~~~   85 (326)
                      ||+.+++
T Consensus       270 yd~~t~~  276 (656)
T 1k3i_A          270 YDSSSDS  276 (656)
T ss_dssp             EEGGGTE
T ss_pred             ecCcCCc
Confidence            9998764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.29  E-value=0.00065  Score=53.39  Aligned_cols=190  Identities=16%  Similarity=0.105  Sum_probs=109.7

Q ss_pred             ceEEEEEcCCCCeEEEEeCC--CcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCC
Q 020461           54 AVWCCDVSRDSMTLITGSAD--QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP  131 (326)
Q Consensus        54 ~V~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (326)
                      .+..+.|++ +.+..+.+.+  ..|+.+|+.+++.+.....+......                                
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fge--------------------------------   68 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGA--------------------------------   68 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEE--------------------------------
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCccee--------------------------------
Confidence            477899986 5666777765  48999999999887655432211000                                


Q ss_pred             CCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC
Q 020461          132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL  211 (326)
Q Consensus       132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~  211 (326)
                            -             +... .++.+.....++.+.++|..+.+.+.++... +   .-..++  +++..|+.+..
T Consensus        69 ------G-------------i~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~---~Gwglt--~dg~~L~vSdg  122 (243)
T 3mbr_X           69 ------G-------------IVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYP-G---EGWALT--SDDSHLYMSDG  122 (243)
T ss_dssp             ------E-------------EEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECS-S---CCCEEE--ECSSCEEEECS
T ss_pred             ------E-------------EEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-C---CceEEe--eCCCEEEEECC
Confidence                  0             0000 1223344567889999999998888776532 2   123343  56666766667


Q ss_pred             CCeEEEeecCCcceEEEEeec------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc-eeeeccc
Q 020461          212 DKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGV  284 (326)
Q Consensus       212 dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~  284 (326)
                      ++.|.++|.++.+.+..+...      ..++.+.+.  ...+++.. .....+...|.+.+.....+ +... .......
T Consensus       123 s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanv-w~s~~I~vIDp~tG~V~~~i-dl~~l~~~~~~~  198 (243)
T 3mbr_X          123 TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANV-WLTSRIARIDPASGKVVAWI-DLQALVPDADAL  198 (243)
T ss_dssp             SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEE-TTTTEEEEECTTTCBEEEEE-ECGGGSTTTTSC
T ss_pred             CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEE-CCCCeEEEEECCCCCEEEEE-ECCcCccccccc
Confidence            899999999999998887643      234555544  23444433 22334556676666543222 1110 0000000


Q ss_pred             -cccCcceeEEEECCCCce-EEee
Q 020461          285 -KGHFGPINALAFNPDGKS-FSSG  306 (326)
Q Consensus       285 -~~h~~~v~~v~~s~d~~~-lat~  306 (326)
                       ..-..-.+.||++|+++. ++||
T Consensus       199 ~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          199 TDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCcCCceEEEEEcCCCCEEEEEC
Confidence             011124588999997665 4554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.28  E-value=0.0011  Score=59.63  Aligned_cols=70  Identities=11%  Similarity=0.138  Sum_probs=46.1

Q ss_pred             CCEEEeecC-CCCeEEEec-CCCCeeeeccCccc----------ce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461           22 GDLLFSCAK-DHTPTVWFA-DNGERLGTYRGHNG----------AV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        22 ~~~l~s~~~-d~~v~iw~~-~~~~~~~~~~~h~~----------~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      +..++.++. ++.|.-+|. ++|+.+=.++....          .+ ..+++  ++..++.++.|+.+..+|..+|+.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445556666 788888898 88887533321110          01 11222  25577888899999999999999987


Q ss_pred             EEecC
Q 020461           89 TFNFD   93 (326)
Q Consensus        89 ~~~~~   93 (326)
                      .....
T Consensus       140 ~~~~~  144 (571)
T 2ad6_A          140 EVEVC  144 (571)
T ss_dssp             EEECC
T ss_pred             EecCC
Confidence            76543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.25  E-value=0.00013  Score=58.01  Aligned_cols=200  Identities=12%  Similarity=0.096  Sum_probs=115.0

Q ss_pred             CeeeeccCc-ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceecee
Q 020461           43 ERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        43 ~~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      +.+.++... ......+.|+ ++.+..+.+.+|.|+++|+++++.+... .+.....                       
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fg-----------------------   98 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFA-----------------------   98 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCE-----------------------
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcce-----------------------
Confidence            344455322 2346788887 4667788888899999999998865443 2211000                       


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~  201 (326)
                                     +-             +.... ++.......++.+.++|..+.+.+.++... +   .-..++  +
T Consensus        99 ---------------eG-------------it~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~---eGwGLt--~  143 (268)
T 3nok_A           99 ---------------EG-------------LASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-G---EGWGLC--Y  143 (268)
T ss_dssp             ---------------EE-------------EEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECS-S---CCCCEE--E
T ss_pred             ---------------eE-------------EEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCC-C---ceeEEe--c
Confidence                           00             00111 123344567889999999999888776532 2   123333  5


Q ss_pred             CCCeEEEEeCCCeEEEeecCCcceEEEEeecc------ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecc
Q 020461          202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK  275 (326)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (326)
                      |+..|+.+..++.|.++|.++.+.+..+....      .++.+.+. ++ .+++.. .....+...|...+.....+ +.
T Consensus       144 Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanv-w~s~~I~vIDp~TG~V~~~I-dl  219 (268)
T 3nok_A          144 WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANI-WHSSDVLEIDPATGTVVGVI-DA  219 (268)
T ss_dssp             ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEE-TTCSEEEEECTTTCBEEEEE-EC
T ss_pred             CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEE-CCCCeEEEEeCCCCcEEEEE-EC
Confidence            67777777778999999999999998876432      34556665 34 455443 23334556676666543222 21


Q ss_pred             c-ceeeecc-ccccCcceeEEEECCCCce-EEee
Q 020461          276 I-LQEEIGG-VKGHFGPINALAFNPDGKS-FSSG  306 (326)
Q Consensus       276 ~-~~~~~~~-~~~h~~~v~~v~~s~d~~~-lat~  306 (326)
                      . ....... ...-..-.+.|||+|+++. ++||
T Consensus       220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            1 0000000 0011124588999997665 5554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.18  E-value=0.0035  Score=56.61  Aligned_cols=201  Identities=13%  Similarity=0.101  Sum_probs=107.2

Q ss_pred             CCEEEeecC-CCCeEEEec-CCCCeeeeccCccc----------c-eEEEEEcCCCCe----EEEEeCCCcEEEEEccCC
Q 020461           22 GDLLFSCAK-DHTPTVWFA-DNGERLGTYRGHNG----------A-VWCCDVSRDSMT----LITGSADQTAKLWNVETG   84 (326)
Q Consensus        22 ~~~l~s~~~-d~~v~iw~~-~~~~~~~~~~~h~~----------~-V~~~~~~~~~~~----l~s~~~d~~i~~wd~~~~   84 (326)
                      +..++.++. ++.|.-+|. ++|+.+=.++....          . ...++++|.+..    ++.++.|+.+..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            445666666 788888898 88877533322111          0 123455433334    788889999999999999


Q ss_pred             cEEEEEecCCC-----cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC--------------
Q 020461           85 AQLFTFNFDSP-----ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--------------  145 (326)
Q Consensus        85 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  145 (326)
                      +.+........     ..+.-...++.+++............+...+.      .+++.+-.....              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~------~TG~~~W~~~~~~~~~~~~~~p~~~~  215 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDV------KTGEQVWRAYATGPDKDLLLASDFNI  215 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEET------TTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred             CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEEC------CCCcEEEEEcCCCCcccccccccccc
Confidence            98877654321     11100112344333221100000111111110      011111111100              


Q ss_pred             -----------------------ccce-eEEEEecCCcEEEEeeCC----------------CcEEEEECCCCccccccc
Q 020461          146 -----------------------QGRI-NRAVWGPLNRTIISAGED----------------AIVRIWDTETGKLLKESD  185 (326)
Q Consensus       146 -----------------------~~~i-~~~~~~~~~~~l~s~~~d----------------~~i~~wd~~~~~~~~~~~  185 (326)
                                             ...+ ...++.+....++.+..+                +.|..+|.++|+..-...
T Consensus       216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q  295 (599)
T 1w6s_A          216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ  295 (599)
T ss_dssp             TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence                                   0001 134566777777766554                379999999998754432


Q ss_pred             cccCcc--------eeeEEEEEc-CCC---CeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          186 KETGHK--------KTITSLAKA-ADG---SHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       186 ~~~~h~--------~~v~~v~~s-~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      . ..|.        .++. +... .+|   ..++.++.+|.++..|.++++.+....
T Consensus       296 ~-~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          296 K-TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             S-STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             c-CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            2 1221        1121 2222 467   567889999999999999999887664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.18  E-value=0.0018  Score=53.17  Aligned_cols=74  Identities=14%  Similarity=0.041  Sum_probs=49.8

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQ   86 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~   86 (326)
                      .....++|+++++++++-..++.|..|+... .....+. -.+....+++.++++++++.....  .|..+|..+++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            4467899999999888877889999998764 3332222 234678899999998655543322  355556666554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.15  E-value=0.0017  Score=58.43  Aligned_cols=70  Identities=10%  Similarity=0.029  Sum_probs=45.7

Q ss_pred             CCEEEeecCCCCeEEEecCCCCeeeecc--Cccc--ceEE-EEEcCCCCeEEEEeC------CCcEEEEEccCCcEEEEE
Q 020461           22 GDLLFSCAKDHTPTVWFADNGERLGTYR--GHNG--AVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        22 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h~~--~V~~-~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~   90 (326)
                      +..++.++.|+.+.-+|.++|+.+-...  .+..  .+.+ .... ++ .++.++.      ++.|..+|..+|+.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            4567777889999999999998764433  2211  1221 1111 34 4555544      799999999999998877


Q ss_pred             ecC
Q 020461           91 NFD   93 (326)
Q Consensus        91 ~~~   93 (326)
                      ...
T Consensus       193 ~~~  195 (571)
T 2ad6_A          193 FAT  195 (571)
T ss_dssp             ESS
T ss_pred             ccC
Confidence            643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.10  E-value=0.00026  Score=65.03  Aligned_cols=195  Identities=12%  Similarity=0.161  Sum_probs=110.3

Q ss_pred             eEEEEccCCCEEEeecCCCC-------------------eEEEecCCCCeeeeccC--cc-------cceEEEEEcCCCC
Q 020461           14 TYLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM   65 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~-------------------v~iw~~~~~~~~~~~~~--h~-------~~V~~~~~~~~~~   65 (326)
                      ..++++|++.+++.++.++.                   |.-+|.++|+.+=.++.  |.       .+.....+..+++
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            35788898888888877663                   88889999987655543  32       2222223333564


Q ss_pred             ---eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeee--cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEE
Q 020461           66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA--VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL  140 (326)
Q Consensus        66 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (326)
                         .++.++.+|.+.++|..+|+.+....+........+.  .+..+.  ......                  .+....
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~--~~~~~~------------------~~~~~~  372 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVE--APGVRY------------------EKEPIV  372 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEE--CTTTTC------------------SSSCEE
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccc--cccccc------------------cCCeeE
Confidence               6889999999999999999988665543211000000  000000  000000                  000111


Q ss_pred             EeccCccce--eEEEEecCCcEEE------------------------------------EeeCCCcEEEEECCCCcccc
Q 020461          141 ILKGPQGRI--NRAVWGPLNRTII------------------------------------SAGEDAIVRIWDTETGKLLK  182 (326)
Q Consensus       141 ~~~~~~~~i--~~~~~~~~~~~l~------------------------------------s~~~d~~i~~wd~~~~~~~~  182 (326)
                      .+.+..+..  ..++++|+...++                                    ....+|.|..||+.+++..-
T Consensus       373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W  452 (668)
T 1kv9_A          373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW  452 (668)
T ss_dssp             ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred             ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence            111110000  1123333333222                                    12245889999999998654


Q ss_pred             ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461          183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (326)
Q Consensus       183 ~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  232 (326)
                      ....    ........+...+.+++.++.|+.++.||.++++.+..+...
T Consensus       453 ~~~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          453 KVPY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EccC----CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            3321    122222333445778889999999999999999999888654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.09  E-value=0.002  Score=53.39  Aligned_cols=163  Identities=12%  Similarity=0.054  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCC
Q 020461           55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ  134 (326)
Q Consensus        55 V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (326)
                      -.++++++++++++++..++.|..||..+++.. .+.........                           ...+    
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~---------------------------~~~~----   68 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNK---------------------------AFCE----   68 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCH---------------------------HHHT----
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccc---------------------------cccc----
Confidence            456788888887888888899999987765432 11110000000                           0000    


Q ss_pred             CCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc-ccC-cceeeEEEEEcC-CCCeEEEEeC
Q 020461          135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETG-HKKTITSLAKAA-DGSHFLTGSL  211 (326)
Q Consensus       135 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~-h~~~v~~v~~s~-~~~~l~s~s~  211 (326)
                       +............+..++++++...|+.+...+.|..+|..+++. ..+.. ..+ .......+++++ +|...++-..
T Consensus        69 -g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~  146 (322)
T 2fp8_A           69 -NSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVS  146 (322)
T ss_dssp             -TCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESC
T ss_pred             -cccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCc
Confidence             000000000112355677887333444454445588888765532 11111 011 112367789999 8877666432


Q ss_pred             -----------------CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEec
Q 020461          212 -----------------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       212 -----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  251 (326)
                                       ++.|..+|..+++...........+.++++++++.++++-
T Consensus       147 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d  203 (322)
T 2fp8_A          147 TLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE  203 (322)
T ss_dssp             SSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEE
T ss_pred             ccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEe
Confidence                             3678889987765433222234567899999988777653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.02  E-value=0.0012  Score=60.57  Aligned_cols=74  Identities=4%  Similarity=0.087  Sum_probs=50.5

Q ss_pred             ceeEEEEccCCCEEEeec-CCCCeEEEecCCCCeeeeccCcccc-eEEEEEcCCCCeEEEEe-CC-----CcEEEEEccC
Q 020461           12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRDSMTLITGS-AD-----QTAKLWNVET   83 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~~-~d-----~~i~~wd~~~   83 (326)
                      ...++++.+++++++.|+ .+..+.+||..+.+....-.-+... -.++...++++.++.|| .+     ..+.+||+.+
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            344577889999999888 4568999999887654332222221 12344556888888888 44     5689999987


Q ss_pred             Cc
Q 020461           84 GA   85 (326)
Q Consensus        84 ~~   85 (326)
                      ++
T Consensus       324 ~~  325 (656)
T 1k3i_A          324 KT  325 (656)
T ss_dssp             TE
T ss_pred             Cc
Confidence            65

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.01  E-value=0.01  Score=55.71  Aligned_cols=281  Identities=9%  Similarity=0.046  Sum_probs=148.9

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-------cccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      ...|.++...+++.+.+....+| +.+|+..+++.......       ....|.++...+++.+. .|..+ -|.+||..
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCC
Confidence            35678888888888766554444 78888777654332211       13569999888777644 45555 58889987


Q ss_pred             CCcEEEEEecC---------CCcceeeeecCCeEEEEEcC-ccceecee-eeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           83 TGAQLFTFNFD---------SPARSVDFAVGDKLAVITTD-PFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        83 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                      +++... +...         ..+.++.....+.+.+.... .....+.. ..+..........        .-....|.+
T Consensus       291 ~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~--------~l~~~~V~~  361 (795)
T 4a2l_A          291 TDSFAS-YSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKN--------SLSDNVVSC  361 (795)
T ss_dssp             TTEEEE-ECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSS--------SCSCSSEEE
T ss_pred             CCeEEE-EecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCC--------CCCCCeeEE
Confidence            765432 2211         11223333333344433321 11111000 0000000000000        012345788


Q ss_pred             EEEecCCcEEEEeeCCCcEEEEECCCCcccccccccc------CcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (326)
Q Consensus       152 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (326)
                      +...+++. |..|..++-|..||..+++... +....      -....|.++..++++..|..|+.++-|..+|.++++.
T Consensus       362 i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          362 IVEDKDKN-LWIGTNDGGLNLYNPITQRFTS-YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             EEECTTSC-EEEEESSSCEEEECTTTCCEEE-ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred             EEECCCCC-EEEEECCCCeEEEcCCCCcEEE-EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence            88887766 4457777779999987654322 11110      1235688999888887577788878899999988664


Q ss_pred             EEEEee------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          226 IKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       226 ~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      . .+..      ...+.++...+++. +.++.. .+  +..+|...+.+...  .....  ..  .-....|.++...++
T Consensus       440 ~-~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~G--l~~~~~~~~~~~~~--~~~~~--~~--~~~~~~i~~i~~d~~  508 (795)
T 4a2l_A          440 E-NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SA--LVRFNPEQRSFTTI--EKEKD--GT--PVVSKQITTLFRDSH  508 (795)
T ss_dssp             E-EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SC--EEEEETTTTEEEEC--CBCTT--CC--BCCCCCEEEEEECTT
T ss_pred             E-EeecCCCCcCCCeeEEEEECCCCC-EEEEec-Cc--eeEEeCCCCeEEEc--ccccc--cc--ccCCceEEEEEECCC
Confidence            3 2321      23567777776654 333333 22  33344433332211  10000  00  112357899999999


Q ss_pred             CceEEeecCCCcEEEeec
Q 020461          300 GKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       300 ~~~lat~s~Dg~i~l~~~  317 (326)
                      |.+.+... .| |..++.
T Consensus       509 g~lWigt~-~G-l~~~~~  524 (795)
T 4a2l_A          509 KRLWIGGE-EG-LSVFKQ  524 (795)
T ss_dssp             CCEEEEES-SC-EEEEEE
T ss_pred             CCEEEEeC-Cc-eEEEeC
Confidence            98776554 44 444443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.96  E-value=0.0053  Score=55.42  Aligned_cols=67  Identities=18%  Similarity=0.195  Sum_probs=43.9

Q ss_pred             EEeecCCCCeEEEecCCCCeeeeccCcc--c--ceEE-EEEcCCCCeEEEEe------CCCcEEEEEccCCcEEEEEecC
Q 020461           25 LFSCAKDHTPTVWFADNGERLGTYRGHN--G--AVWC-CDVSRDSMTLITGS------ADQTAKLWNVETGAQLFTFNFD   93 (326)
Q Consensus        25 l~s~~~d~~v~iw~~~~~~~~~~~~~h~--~--~V~~-~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~   93 (326)
                      ++.++.|+.+.-+|.++|+.+=......  .  .+.+ ..+. ++ .++.++      .++.|..+|.++|+.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            7778889999999999998764432211  0  1221 1111 34 444444      3899999999999998877654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.95  E-value=0.0023  Score=59.61  Aligned_cols=97  Identities=10%  Similarity=-0.044  Sum_probs=58.6

Q ss_pred             ceeEEEEc-cCCCEEEeecC-C----CCeEEEecCCC-CeeeeccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEE
Q 020461           12 PLTYLKYN-KDGDLLFSCAK-D----HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW   79 (326)
Q Consensus        12 ~i~~~~~s-~~~~~l~s~~~-d----~~v~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~w   79 (326)
                      .+...+|| |||++||-+.. +    ..|+++|+.++ +.+..  .-......++|+||++.|+-...|     ..|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            56788999 99998774332 2    35999999988 63211  001123468899999877666654     256777


Q ss_pred             EccCCc--EEEEEecC--CCcceeeeecCCeEEEE
Q 020461           80 NVETGA--QLFTFNFD--SPARSVDFAVGDKLAVI  110 (326)
Q Consensus        80 d~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~  110 (326)
                      ++.++.  ....+...  .-.....++++++.++.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~  287 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI  287 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE
Confidence            877653  22333322  12234567776655444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.94  E-value=0.0047  Score=49.48  Aligned_cols=210  Identities=8%  Similarity=-0.029  Sum_probs=107.3

Q ss_pred             EEEeecCCCCeEEEecCCCCee-----eeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEEEEecC-CCc
Q 020461           24 LLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNFD-SPA   96 (326)
Q Consensus        24 ~l~s~~~d~~v~iw~~~~~~~~-----~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~-~~~   96 (326)
                      +|+.+.. +.|+.+++......     ..+.........++++++++.|+.+. ..+.|..+++.+.......... ...
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            3444433 36777777654321     11222233567899998766555444 5788999998766543332211 233


Q ss_pred             ceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC---CCcEEE
Q 020461           97 RSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRI  172 (326)
Q Consensus        97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---d~~i~~  172 (326)
                      ..+.+.+ ++.+.++....     ..+.....  +   .. ...............++++|++..|+.+..   .+.|..
T Consensus        82 ~~ia~d~~~~~lyv~d~~~-----~~I~~~~~--~---g~-~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~  150 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQL-----DRIEVAKM--D---GT-QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (267)
T ss_dssp             EEEEEETTTTEEEEEETTT-----TEEEEEET--T---SC-SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             cEEEEEecCCeEEEEECCC-----CEEEEEEc--C---CC-CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence            4555655 34444433221     11111111  1   01 111112222245678999997665544433   468888


Q ss_pred             EECCCCccccccccccCcceeeEEEEEcCCCCeEE-EEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461          173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  250 (326)
                      +++.. +....+..  ........+++++++..|. +-...+.|..+|+.................++.  +++.++++
T Consensus       151 ~~~dg-~~~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva  224 (267)
T 1npe_A          151 SHMDG-TNRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYT  224 (267)
T ss_dssp             EETTS-CCCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEE
T ss_pred             EecCC-CCcEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEE
Confidence            88753 22222211  1123467899999876665 445568899999976443222222223345543  34455544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.93  E-value=0.011  Score=53.25  Aligned_cols=62  Identities=11%  Similarity=0.002  Sum_probs=42.1

Q ss_pred             CcEEEEECCCCccccccccccCcc--------eeeEEEEEc-CCCC---eEEEEeCCCeEEEeecCCcceEEEEee
Q 020461          168 AIVRIWDTETGKLLKESDKETGHK--------KTITSLAKA-ADGS---HFLTGSLDKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~--------~~v~~v~~s-~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (326)
                      +.|..+|.++|+..-.... ..|.        .++. +... .+|+   .++.++.+|.++.+|.++++.+..+..
T Consensus       291 ~~v~AlD~~TG~~~W~~q~-~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQH-TPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             SEEEEECTTTCCEEEEEES-STTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEeCCCCCEEEEEeC-CCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            5799999999987644321 1121        1221 2221 4663   788899999999999999998877653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.84  E-value=0.0014  Score=59.10  Aligned_cols=77  Identities=19%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEE--EEeCCC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPL  243 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~s~~  243 (326)
                      .+|.|..||+.+++.+-.....    ..+..-.....+.+++.|+.|+.++.+|.++++.+-++.....+.+  +.+..+
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~  539 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence            3688999999998765433211    1121111122356788899999999999999999998875433222  344445


Q ss_pred             CCe
Q 020461          244 LDH  246 (326)
Q Consensus       244 ~~~  246 (326)
                      +..
T Consensus       540 G~q  542 (582)
T 1flg_A          540 GEQ  542 (582)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.82  E-value=0.00063  Score=63.43  Aligned_cols=99  Identities=7%  Similarity=-0.012  Sum_probs=65.8

Q ss_pred             ceeEEEEe-cCCcEEEEeeC-C----CcEEEEECCCC-ccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeE
Q 020461          148 RINRAVWG-PLNRTIISAGE-D----AIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSA  215 (326)
Q Consensus       148 ~i~~~~~~-~~~~~l~s~~~-d----~~i~~wd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i  215 (326)
                      .+....|| |+|+.|+.+.. +    ..|+++|+.++ +.+...     -......+.|+|||+.|+....|     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-----~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-----VSGTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-----EEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-----ccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            56788999 99998875432 2    25999999988 632211     01224578999999988877765     358


Q ss_pred             EEeecCCcceE--EEEe--eccceEEEEeCCCCCeeEEec
Q 020461          216 KLWDARTLELI--KTYV--TERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       216 ~iwd~~~~~~~--~~~~--~~~~~~~~~~s~~~~~~~~~~  251 (326)
                      +.+++.+++..  ..+.  .......+.++|+++.+++..
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence            88888876422  1121  122345678999999887654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.77  E-value=0.0041  Score=51.10  Aligned_cols=179  Identities=7%  Similarity=0.099  Sum_probs=104.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeec-CCCCeEEEecCCCCeee-eccC----cc--cceEEEEE---cCCCCeEEEEe-
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLG-TYRG----HN--GAVWCCDV---SRDSMTLITGS-   71 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~-~~~~----h~--~~V~~~~~---~~~~~~l~s~~-   71 (326)
                      +.+....-...+++|++...++..++ ..++|..|+...+.... .+.+    ..  ..+..|.+   .|+++++++.. 
T Consensus         6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A            6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            55666666678999998666555555 78999999987664322 3332    11  14578999   67877666433 


Q ss_pred             ------------CCCcEEEEEcc---CCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCC
Q 020461           72 ------------ADQTAKLWNVE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (326)
Q Consensus        72 ------------~d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (326)
                                  .+..+..+|+.   +++.+..........                       .  +...         
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~-----------------------~--~~~~---------  131 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQD-----------------------E--FEKK---------  131 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHH-----------------------H--HHHH---------
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccc-----------------------c--cccc---------
Confidence                        15567777776   554433221100000                       0  0000         


Q ss_pred             ceEEEecc-CccceeEEEEecCCcEEEEeeCC-CcEEEEECCCCccccccc---cccCcceeeEEEEEcCCCCeEEEEeC
Q 020461          137 ESVLILKG-PQGRINRAVWGPLNRTIISAGED-AIVRIWDTETGKLLKESD---KETGHKKTITSLAKAADGSHFLTGSL  211 (326)
Q Consensus       137 ~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s~  211 (326)
                            .+ .....+.++..++|+..++++.- +.|...+... +......   .........+.+++.|+|..|++...
T Consensus       132 ------~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          132 ------AGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             ------HSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             ------ccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence                  00 01235567777777777777666 6666665542 2221110   01112233678899999999888877


Q ss_pred             CCeEEEeecCCc
Q 020461          212 DKSAKLWDARTL  223 (326)
Q Consensus       212 dg~i~iwd~~~~  223 (326)
                      .|.|.-+|+++.
T Consensus       205 ~g~L~~fD~~~p  216 (334)
T 2p9w_A          205 PRALTAFDVSKP  216 (334)
T ss_dssp             SSSEEEEECSSS
T ss_pred             CCeEEEEcCCCC
Confidence            999999998853

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.70  E-value=0.02  Score=49.51  Aligned_cols=160  Identities=12%  Similarity=0.062  Sum_probs=87.3

Q ss_pred             CceeEEEEccC---CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461           11 RPLTYLKYNKD---GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus        11 ~~i~~~~~s~~---~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      .....++++|+   +.++++ ...+.|+.++..++...... ........++++++++ |+.+...+.      .....+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~------~~~~gv  209 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSS------DTNTGI  209 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSC------TTSEEE
T ss_pred             CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCC------cccceE
Confidence            34578999995   554444 33389999998777654433 3344578899999998 554443220      000001


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEeeC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGE  166 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~  166 (326)
                      ..+.....                   +.                  ......    .......++++| ++.++++-..
T Consensus       210 ~~~~~~~~-------------------~~------------------~~~~~~----~~~~P~giavd~~~G~lyv~d~~  248 (433)
T 4hw6_A          210 YLFTRASG-------------------FT------------------ERLSLC----NARGAKTCAVHPQNGKIYYTRYH  248 (433)
T ss_dssp             EEECGGGT-------------------TC------------------CEEEEE----ECSSBCCCEECTTTCCEEECBTT
T ss_pred             EEEECCCC-------------------ee------------------cccccc----ccCCCCEEEEeCCCCeEEEEECC
Confidence            00000000                   00                  000000    012234467788 5555556666


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecC
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDAR  221 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~  221 (326)
                      ++.|+.+|..+++....+... +.......++++|++.+| ++-...+.|+.++..
T Consensus       249 ~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          249 HAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            788999998766542222111 111223469999999854 455567889997754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.62  E-value=0.045  Score=51.33  Aligned_cols=266  Identities=8%  Similarity=0.034  Sum_probs=143.9

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-------cccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..|.++..+++|.+.+.. .+ -+.+|+..++........       ....|.++...++|. |..|..++-|..|+..+
T Consensus       263 ~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIR  339 (795)
T ss_dssp             SBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGG
T ss_pred             CeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCc
Confidence            458899999999876654 34 578888777654432211       235699998887775 56677777788998776


Q ss_pred             CcEEEEEecC--------CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec---------cCc
Q 020461           84 GAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK---------GPQ  146 (326)
Q Consensus        84 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  146 (326)
                      +.... +...        ..+.++.....+.+.+.....-+      ......      .+ ....+.         -..
T Consensus       340 ~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl------~~~~~~------~~-~~~~~~~~~~~~~~~l~~  405 (795)
T 4a2l_A          340 NRFKN-IRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGL------NLYNPI------TQ-RFTSYTLQEDESARGIGS  405 (795)
T ss_dssp             GSSEE-ECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCE------EEECTT------TC-CEEEECCC------CCSC
T ss_pred             ccceE-EcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCe------EEEcCC------CC-cEEEEecCCCCcccCCCC
Confidence            54322 2111        11222222223333333222111      100000      00 111110         123


Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc--ccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      ..|.++...+++..|..|..++-|..||..+++... +..  .......|.++..+++|...+ |+.+ .|..||.++++
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~  482 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRS  482 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCe
Confidence            568888888888756667777779999988765422 111  002345688999888887544 4444 58889988765


Q ss_pred             eEEEEee-------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461          225 LIKTYVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (326)
Q Consensus       225 ~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  297 (326)
                      ...-...       ...+.++...+++..- ++.. .+  +..+|...+.+  .+ ....  ...  ......|.++...
T Consensus       483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~-~G--l~~~~~~~~~~--~~-~~~~--~~~--~l~~~~i~~i~~d  551 (795)
T 4a2l_A          483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLW-IGGE-EG--LSVFKQEGLDI--QK-ASIL--PVS--NVTKLFTNCIYEA  551 (795)
T ss_dssp             EEECCBCTTCCBCCCCCEEEEEECTTCCEE-EEES-SC--EEEEEEETTEE--EE-CCCS--CSC--GGGGSCEEEEEEC
T ss_pred             EEEccccccccccCCceEEEEEECCCCCEE-EEeC-Cc--eEEEeCCCCeE--EE-ecCC--CCC--CCCCCeeEEEEEC
Confidence            4322111       1346777777766543 3332 32  23333333222  11 1000  000  1134578999999


Q ss_pred             CCCceEEeec
Q 020461          298 PDGKSFSSGG  307 (326)
Q Consensus       298 ~d~~~lat~s  307 (326)
                      ++|.+.++..
T Consensus       552 ~~g~lWigT~  561 (795)
T 4a2l_A          552 SNGIIWVGTR  561 (795)
T ss_dssp             TTSCEEEEES
T ss_pred             CCCCEEEEeC
Confidence            9998766444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.57  E-value=0.019  Score=45.59  Aligned_cols=197  Identities=10%  Similarity=0.104  Sum_probs=114.8

Q ss_pred             ecCCceeEEEEccCCCEEEe-ecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCc
Q 020461            8 GHERPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s-~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      |=.+.+..++|+|+++.|++ ...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            44467899999998776655 6667788888887 777766532 12457788888888766665466677777765433


Q ss_pred             EEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee
Q 020461           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (326)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  165 (326)
                      .+....                             .... .+..             ...+.....++|+|.++.|+++.
T Consensus       103 ~i~~~~-----------------------------~~~~-~~~~-------------~~~N~g~EGLA~d~~~~~L~va~  139 (255)
T 3qqz_A          103 EVKILK-----------------------------KIKI-PLQE-------------SPTNCGFEGLAYSRQDHTFWFFK  139 (255)
T ss_dssp             CEEEEE-----------------------------EEEC-CCSS-------------CCCSSCCEEEEEETTTTEEEEEE
T ss_pred             eeeeee-----------------------------eecc-cccc-------------ccccCCcceEEEeCCCCEEEEEE
Confidence            211000                             0000 0000             01123355688899887776666


Q ss_pred             CCCcEEEEECCC---Ccccccccc----ccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecCCcceEEEEeec-----
Q 020461          166 EDAIVRIWDTET---GKLLKESDK----ETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTE-----  232 (326)
Q Consensus       166 ~d~~i~~wd~~~---~~~~~~~~~----~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----  232 (326)
                      +.....+|....   ...+.....    ...+...+.+++++|... +++....+..|..+|.+ ++.+..+...     
T Consensus       140 E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~  218 (255)
T 3qqz_A          140 EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRG  218 (255)
T ss_dssp             ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGG
T ss_pred             CcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCC
Confidence            655555555431   111110000    011233567888888644 45556667788899976 4555555422     


Q ss_pred             -----cceEEEEeCCCCCeeEE
Q 020461          233 -----RPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       233 -----~~~~~~~~s~~~~~~~~  249 (326)
                           .....++|.++++..++
T Consensus       219 l~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          219 LSHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             CSSCCCSEEEEEECTTCCEEEE
T ss_pred             cccccCCCCeeEECCCCCEEEE
Confidence                 26789999999874444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.55  E-value=0.024  Score=46.42  Aligned_cols=195  Identities=12%  Similarity=0.053  Sum_probs=103.4

Q ss_pred             CceeEEEEccCCCEEEeecCCCC--eEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHT--PTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~--v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      ..+..++++++|+++++......  |..++..+++...... .....-..++..+++..+++-..++.|..+|..+++..
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            35678999999997776544333  5556666776532221 11122344444444444444445677766666543211


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEeeC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGE  166 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~  166 (326)
                      .....                     +..           .....          .+.....+.+  +|+++.| ++-..
T Consensus       152 v~~~~---------------------~~~-----------~~~~~----------~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          152 IWLEH---------------------PML-----------ARSNS----------ESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEEEC---------------------GGG-----------SCSST----------TCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEEEC---------------------Ccc-----------ccccc----------cCCCCcCCCc--CcCCCEEEEEeCC
Confidence            00000                     000           00000          0000111223  6677655 45556


Q ss_pred             CCcEEEEECCC-CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE--EEeec-cceEEEEeC-
Q 020461          167 DAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTE-RPVNAVTMS-  241 (326)
Q Consensus       167 d~~i~~wd~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~-~~~~~~~~s-  241 (326)
                      .++|..+|+.. ++. ...... ........++++++|.+.++....+.|..+|.. ++...  .+... ..+.++++. 
T Consensus       188 ~~~I~~~~~~~~g~~-~~~~~~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g  264 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKP-GEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ  264 (306)
T ss_dssp             TTEEEEEEBCTTSCB-CCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred             CCEEEEEEeCCCCCC-CccEEE-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence            78899999864 322 111000 001235678899999887777778899999986 54422  22222 457889998 


Q ss_pred             --CCCCeeEEecC
Q 020461          242 --PLLDHVVLGGG  252 (326)
Q Consensus       242 --~~~~~~~~~~~  252 (326)
                        |+++.++++..
T Consensus       265 ~~~d~~~LyVt~~  277 (306)
T 2p4o_A          265 TEGDCTAIYVVTN  277 (306)
T ss_dssp             STTTTTEEEEEEC
T ss_pred             ccCCCCEEEEECC
Confidence              78777776543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.55  E-value=0.057  Score=50.55  Aligned_cols=278  Identities=8%  Similarity=0.069  Sum_probs=137.0

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-------cccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..|.++...+++.+.+... + -+.+|+..+++.......       ....|.++...+++. +..|...+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwigt~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGTS-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEET-T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEeC-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            4588888888888776554 4 578888776654322111       234688888877765 55566645678889876


Q ss_pred             CcEEEEEe-------c--------CCCcceeeeecCCeEEEEEcC-ccceeceee-eeeeeccCCCCCCCceEEEeccCc
Q 020461           84 GAQLFTFN-------F--------DSPARSVDFAVGDKLAVITTD-PFMELNSAI-HVKRIARDPADQGGESVLILKGPQ  146 (326)
Q Consensus        84 ~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  146 (326)
                      ++......       .        ...+.++.....+.+.+.... ......... .+......+....     .-.-..
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~-----~~~l~~  362 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMN-----ESSLSN  362 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCC-----SSCCSS
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccc-----cCCCCC
Confidence            64322111       0        011222222222333332211 111110000 0000000000000     000123


Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (326)
                      ..|.++...+++. |..|..++-|..||..+++...-..........|.++..++++. |..|+.++-|..+|.++++..
T Consensus       363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE
Confidence            4577888777765 44566566688999865432211110112335688998888875 555777777999998876543


Q ss_pred             EEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce
Q 020461          227 KTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS  302 (326)
Q Consensus       227 ~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~  302 (326)
                       .+..    ...+.++...+++. +.++.. .+  +..+|...+.+.... ...      ........|.++...++|.+
T Consensus       441 -~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~G--l~~~~~~~~~~~~~~-~~~------~~~~~~~~i~~i~~d~~g~l  508 (781)
T 3v9f_A          441 -IIELEKNELLDVRVFYEDKNKK-IWIGTH-AG--VFVIDLASKKVIHHY-DTS------NSQLLENFVRSIAQDSEGRF  508 (781)
T ss_dssp             -ECCSTTTCCCCEEEEEECTTSE-EEEEET-TE--EEEEESSSSSCCEEE-CTT------TSSCSCSCEEEEEECTTCCE
T ss_pred             -EeccCCCCCCeEEEEEECCCCC-EEEEEC-Cc--eEEEeCCCCeEEecc-cCc------ccccccceeEEEEEcCCCCE
Confidence             2221    23567777776654 444433 22  333443333221110 000      00011357899999998887


Q ss_pred             EEeecCCC
Q 020461          303 FSSGGEDG  310 (326)
Q Consensus       303 lat~s~Dg  310 (326)
                      .+....+|
T Consensus       509 Wigt~~~G  516 (781)
T 3v9f_A          509 WIGTFGGG  516 (781)
T ss_dssp             EEEESSSC
T ss_pred             EEEEcCCC
Confidence            76544355

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.50  E-value=0.028  Score=46.19  Aligned_cols=162  Identities=10%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             ceeEEEEecCCcEEEEee-CCCcEEEEECCCCccccccccc-c--C-cceeeEEEEE---cCCCCeEEEEeC--------
Q 020461          148 RINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKE-T--G-HKKTITSLAK---AADGSHFLTGSL--------  211 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~-~--~-h~~~v~~v~~---s~~~~~l~s~s~--------  211 (326)
                      ...++.|++....|+.++ ..++|..||...+......... .  + ....+..+.+   .+++.++++...        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            344578988666666555 6999999998755332221111 0  1 1224578899   688777775432        


Q ss_pred             -----CCeEEEeecC---CcceEEEEeec--------------cceEEEEeCCCCCeeEEecCC-CcceeEeecccCcee
Q 020461          212 -----DKSAKLWDAR---TLELIKTYVTE--------------RPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDHRAGKF  268 (326)
Q Consensus       212 -----dg~i~iwd~~---~~~~~~~~~~~--------------~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~d~~~~~~  268 (326)
                           +..|..+|+.   +++.+......              ...+.++..++|+..++.... ........|..  . 
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~--~-  170 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK--T-  170 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC--C-
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC--E-
Confidence                 6779999999   77776655311              147789999998876654332 22222222222  1 


Q ss_pred             eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                       ...|.....     ........+.|+++|||..|+.....|.|.-|++.
T Consensus       171 -~~~~~~~~~-----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 -VSTFAWESG-----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             -EEEEEECCC-----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             -EeeeeecCC-----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence             111211110     01111235789999999887777668887766643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.41  E-value=0.011  Score=51.21  Aligned_cols=155  Identities=10%  Similarity=0.131  Sum_probs=85.7

Q ss_pred             ceeEEEEec-CCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-CC----eEEEeecC
Q 020461          148 RINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK----SAKLWDAR  221 (326)
Q Consensus       148 ~i~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-dg----~i~iwd~~  221 (326)
                      ....++++| ++..|+.+...+.|+.+|+..++... +..   .......+++++++.+|+.+.. ++    .+...+. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-Eec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence            456788998 45566665555889999987654332 221   2345789999999995555554 22    2333443 


Q ss_pred             CcceE--EEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          222 TLELI--KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       222 ~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      .+...  ..+........++++|....++++-.... .+..++...+...          .+..... ...-+.++|+|+
T Consensus       213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~-~V~~~~~~~~~~~----------~~~~~~~-~~~P~gia~~pd  280 (430)
T 3tc9_A          213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAG-QVFRYDFTTQETT----------PLFTIQD-SGWEFHIQFHPS  280 (430)
T ss_dssp             GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTT-EEEEEETTTTEEE----------EEEECSS-SSCCEEEEECTT
T ss_pred             CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCC-EEEEEECCCCcEE----------EEEEcCC-CCcceeEEEcCC
Confidence            33222  22333345677888885444554422111 1222222111110          1111111 134578999999


Q ss_pred             Cc-eEEeecCCCcEEEeecCC
Q 020461          300 GK-SFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       300 ~~-~lat~s~Dg~i~l~~~~~  319 (326)
                      |+ ++++-...+.|..++++.
T Consensus       281 G~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          281 GNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSEEEEEETTTTEEEEEEEET
T ss_pred             CCEEEEEECCCCEEEEEeCCc
Confidence            99 456666788888887764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=0.053  Score=46.81  Aligned_cols=156  Identities=9%  Similarity=0.005  Sum_probs=89.7

Q ss_pred             ceeEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC-Cc---EEEEEccCCcE
Q 020461           12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-QT---AKLWNVETGAQ   86 (326)
Q Consensus        12 ~i~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d-~~---i~~wd~~~~~~   86 (326)
                      ....++++| ++..|+.+...+.|+.++.+++...... ........++|+++++.|+.+... +.   ..+|....+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457899998 3444555544478888898766543333 334457789999999966666542 21   11111111100


Q ss_pred             EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec-CCcEEEEee
Q 020461           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAG  165 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~  165 (326)
                      .                             ..                  ..+..    ......++++| ++.++++-.
T Consensus       217 ~-----------------------------~~------------------~~l~~----~~~p~giavdp~~g~lyv~d~  245 (430)
T 3tc9_A          217 K-----------------------------VI------------------TELTK----GQNCNGAETHPINGELYFNSW  245 (430)
T ss_dssp             C-----------------------------SE------------------EEEEE----CSSCCCEEECTTTCCEEEEET
T ss_pred             e-----------------------------ee------------------eeecc----CCCceEEEEeCCCCEEEEEEC
Confidence            0                             00                  00000    11234567888 566666666


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe-EEEEeCCCeEEEeecC
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDAR  221 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~dg~i~iwd~~  221 (326)
                      .++.|..+|...+.... +.. .+.......++++|+|++ .++-...+.|..++..
T Consensus       246 ~~~~V~~~~~~~~~~~~-~~~-~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          246 NAGQVFRYDFTTQETTP-LFT-IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEETTTTEEEE-EEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEECCCCcEEE-EEE-cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            78899999987654311 111 111234678999999995 4555567889988765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.38  E-value=0.044  Score=45.38  Aligned_cols=272  Identities=10%  Similarity=0.071  Sum_probs=130.6

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeee--c--cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--Y--RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~--~--~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      ..+.++.|.+++..+++ +.++.|. .....|+.-..  .  ......+..+.|.+ ++ ++.++.++.|.. ..+.++.
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~t  110 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQS  110 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSS
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCC
Confidence            46789999877777774 4566542 22233332111  1  12344688898876 43 444566664432 3333444


Q ss_pred             EEEEecC----CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           87 LFTFNFD----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        87 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      .......    .....+.....+.+.++.....+        .+.    .+.+..-..........+..+.+.|++.+++
T Consensus       111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v--------~~S----~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~  178 (327)
T 2xbg_A          111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAI--------YRT----KDSGKNWQALVQEAIGVMRNLNRSPSGEYVA  178 (327)
T ss_dssp             CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCE--------EEE----SSTTSSEEEEECSCCCCEEEEEECTTSCEEE
T ss_pred             ceECccccCCCCCeEEEEEECCCCEEEEeCCccE--------EEE----cCCCCCCEEeecCCCcceEEEEEcCCCcEEE
Confidence            3332211    11222333333444433322111        000    0111112222234455678888999888777


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-----cceEE
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----RPVNA  237 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~  237 (326)
                      .+...+..+-+|- .++....+.  .+....+..+.+++++.. +.++.+|.++..+...++.-.....+     ..+..
T Consensus       179 ~g~~G~~~~S~d~-gG~tW~~~~--~~~~~~~~~~~~~~~g~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~  254 (327)
T 2xbg_A          179 VSSRGSFYSTWEP-GQTAWEPHN--RTTSRRLHNMGFTPDGRL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD  254 (327)
T ss_dssp             EETTSSEEEEECT-TCSSCEEEE--CCSSSCEEEEEECTTSCE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred             EECCCcEEEEeCC-CCCceeECC--CCCCCccceeEECCCCCE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence            6654444444442 122222221  123456788888888864 45566788877643323332222211     23667


Q ss_pred             EEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       238 ~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +.+.+.+..++ ++. ++....+.|.-.      -|..     +.....+...+.+++|.+++.. +.++.+|.|.  ++
T Consensus       255 v~~~~~~~~~~-~g~-~g~i~~S~DgG~------tW~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~G~~G~i~--~~  318 (327)
T 2xbg_A          255 LAYRTPNEVWL-AGG-AGALLCSQDGGQ------TWQQ-----DVDVKKVPSNFYKILFFSPDQG-FILGQKGILL--RY  318 (327)
T ss_dssp             EEESSSSCEEE-EES-TTCEEEESSTTS------SCEE-----CGGGTTSSSCCCEEEEEETTEE-EEECSTTEEE--EE
T ss_pred             EEecCCCEEEE-EeC-CCeEEEeCCCCc------ccEE-----cCccCCCCCCeEEEEEECCCce-EEEcCCceEE--EE
Confidence            77877554433 333 333333444221      1111     1101112346788988765654 4556688554  44


Q ss_pred             CC
Q 020461          318 DP  319 (326)
Q Consensus       318 ~~  319 (326)
                      ++
T Consensus       319 ~~  320 (327)
T 2xbg_A          319 VT  320 (327)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.19  E-value=0.035  Score=48.60  Aligned_cols=167  Identities=15%  Similarity=0.145  Sum_probs=90.5

Q ss_pred             ceeEEEEecC-Cc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE-------cCCCCeEEEEeCCC-----
Q 020461          148 RINRAVWGPL-NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-------AADGSHFLTGSLDK-----  213 (326)
Q Consensus       148 ~i~~~~~~~~-~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~-------s~~~~~l~s~s~dg-----  213 (326)
                      ....++++|. .. ++++-...+.|++.|++++..................+++       ++++..|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4567889984 44 4444444577999998876554322211112235788999       99998666665543     


Q ss_pred             --eEEEeecCC-cceE-----EEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc-------CceeeeEeecccc-
Q 020461          214 --SAKLWDART-LELI-----KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR-------AGKFEAKFFDKIL-  277 (326)
Q Consensus       214 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~-------~~~~~~~~~~~~~-  277 (326)
                        .|.+.+... ++..     +.+........++++|....++++-.... .+..+|..       .+..    |.... 
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g-~V~r~d~~~~~~~~~tg~~----~tp~~~  294 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKG-QVFRLDLVDYFKTIKNGGS----WDPIVK  294 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTT-EEEEECHHHHHHHHHTTCC----CCCBGG
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCC-EEEEEecccccccccCcee----eccccc
Confidence              266666444 2221     22222234567888887667666543332 23333322       1111    00000 


Q ss_pred             -----eeeeccccccCcceeEEEECCCCce-EEeecCCCcEEEeecCCC
Q 020461          278 -----QEEIGGVKGHFGPINALAFNPDGKS-FSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       278 -----~~~~~~~~~h~~~v~~v~~s~d~~~-lat~s~Dg~i~l~~~~~~  320 (326)
                           .+.+... +....-..|+|+|+|+. .++-+..+.|+.++++..
T Consensus       295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~  342 (496)
T 3kya_A          295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI  342 (496)
T ss_dssp             GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence                 0011111 11234578999999994 555566788888776653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.16  Score=47.51  Aligned_cols=276  Identities=12%  Similarity=0.035  Sum_probs=142.4

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc--------------CcccceEEEEEcCCCCeEEEEeCCCcE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--------------GHNGAVWCCDVSRDSMTLITGSADQTA   76 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--------------~h~~~V~~~~~~~~~~~l~s~~~d~~i   76 (326)
                      ..|.++...++|.+.+. ...+-+.+++..++.......              -....|.++...+++. |..|..++-|
T Consensus       258 ~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl  335 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWIA-TELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI  335 (781)
T ss_dssp             CCEEEEEECTTSEEEEE-ESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred             ceEEEEEECCCCCEEEE-eCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence            45888888888886654 443456778877654322111              1245688888877765 6667777778


Q ss_pred             EEEEccCCcEEEEEecC-----------CCcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEecc
Q 020461           77 KLWNVETGAQLFTFNFD-----------SPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        77 ~~wd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      ..++..+..... +...           ..+.++.....+.+.+... ......+....  .......        ....
T Consensus       336 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~--~~~~~~~--------~~~~  404 (781)
T 3v9f_A          336 NFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKR--VAIYNKE--------NREL  404 (781)
T ss_dssp             EEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEE--EEECC-------------C
T ss_pred             EEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCC--eEEEccC--------CCCC
Confidence            888887654322 1110           1122222223333433331 11111110000  0000000        0012


Q ss_pred             CccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      ....|.++...+++.+.+ |..++.|..+|..+++... +.........|.++..++++. |..|+. +-|..+|.++++
T Consensus       405 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          405 LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKK  480 (781)
T ss_dssp             CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSS
T ss_pred             CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCe
Confidence            345688888777776444 6666678899987665322 211011245688998888876 444555 568889988765


Q ss_pred             eEEEEee------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461          225 LIKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (326)
Q Consensus       225 ~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  298 (326)
                      .......      ...+.++...+++.. .++....+  +..+|...+.+.  .+...     ..+  ....|.++...+
T Consensus       481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~G--l~~~~~~~~~~~--~~~~~-----~~l--~~~~i~~i~~d~  548 (781)
T 3v9f_A          481 VIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGG--VGIYTPDMQLVR--KFNQY-----EGF--CSNTINQIYRSS  548 (781)
T ss_dssp             CCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSC--EEEECTTCCEEE--EECTT-----TTC--SCSCEEEEEECT
T ss_pred             EEecccCcccccccceeEEEEEcCCCCE-EEEEcCCC--EEEEeCCCCeEE--EccCC-----CCC--CCCeeEEEEECC
Confidence            4332211      235777777776654 33322122  333443333221  11110     011  235689999999


Q ss_pred             CCceEEeecCCCcEEEee
Q 020461          299 DGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       299 d~~~lat~s~Dg~i~l~~  316 (326)
                      +|.+.++.. +|-|..|+
T Consensus       549 ~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          549 KGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             TSCEEEEET-TEEEEESC
T ss_pred             CCCEEEEEC-CCceEEEC
Confidence            998776544 66534433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.07  E-value=0.077  Score=42.09  Aligned_cols=213  Identities=13%  Similarity=0.121  Sum_probs=110.5

Q ss_pred             eccCcccceEEEEEcCCCCeEEE-EeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeee
Q 020461           47 TYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (326)
Q Consensus        47 ~~~~h~~~V~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (326)
                      .+.+-...+..++++|+++.|++ ...++.|...|.+ ++.+..+.+...                              
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~------------------------------   69 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV------------------------------   69 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC------------------------------
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC------------------------------
Confidence            34455567999999998765554 6677777777876 665544432110                              


Q ss_pred             eeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccc---cccc---cccCcceeeEEEEE
Q 020461          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL---KESD---KETGHKKTITSLAK  199 (326)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~---~~~~h~~~v~~v~~  199 (326)
                                           ...-.+++.+++.++++.-.++.+.++++.....+   ....   ...........+++
T Consensus        70 ---------------------~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~  128 (255)
T 3qqz_A           70 ---------------------KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAY  128 (255)
T ss_dssp             ---------------------SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEE
T ss_pred             ---------------------CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEE
Confidence                                 00111223333443333333444555554322211   1110   01123445789999


Q ss_pred             cCCCCeEEEEeCCCeEEEeecCC---cceEEEEe--------eccceEEEEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461          200 AADGSHFLTGSLDKSAKLWDART---LELIKTYV--------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (326)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~--------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~  268 (326)
                      +|++..|.++.......+|.++.   ...+....        ......+++++|...++++....... +..+|.. +. 
T Consensus       129 d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~-L~~~d~~-g~-  205 (255)
T 3qqz_A          129 SRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRA-LQEVTLV-GE-  205 (255)
T ss_dssp             ETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTE-EEEECTT-CC-
T ss_pred             eCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCe-EEEEcCC-CC-
Confidence            99998888888766656665531   11111111        11356899999988887776554443 3344433 22 


Q ss_pred             eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      .+..+....+  ...+..-...-..|+|.|+|.+.++ |+-.  .+|.|.+
T Consensus       206 ~~~~~~L~~g--~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f~~  251 (255)
T 3qqz_A          206 VIGEMSLTKG--SRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRFTP  251 (255)
T ss_dssp             EEEEEECSTT--GGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEEEC
T ss_pred             EEEEEEcCCc--cCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEEEe
Confidence            1222221110  0111111234578999999986665 5555  5555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.04  E-value=0.023  Score=52.45  Aligned_cols=207  Identities=12%  Similarity=-0.053  Sum_probs=105.8

Q ss_pred             ceeEEEEccCCCEEE-eecCCCCeEEEecCC----CCeeeeccCcccceEEEEEcCCC-CeEEEEeCCCcEEEEEccCCc
Q 020461           12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      .+..++|++.+..|+ +-...+.|+.+++..    ......+...-.....|++.+.+ +++++-...+.|.+.++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            456789998665544 445678899988765    22222222212234567887544 444554567889999987654


Q ss_pred             EEEEEecC-CCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-E
Q 020461           86 QLFTFNFD-SPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-I  162 (326)
Q Consensus        86 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~  162 (326)
                      ....+... .....+.+.+. ..+.+.....    ...+  .++.   .+... ............+.++++|++..| +
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~----~~~I--~~~~---~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGT----PAKI--KKGG---LNGVD-IYSLVTENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSS----SCCE--EBCC---SSSCC-CCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCC----CCeE--EEEe---CCCCC-eeEEEeCCCCCccEEEEeccCCEEEE
Confidence            43332211 22234444432 2222211110    0111  1111   01111 111112223345678999876544 4


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      +-...+.|..+|+... ....+............+++..+ ..+++....+.|..+|..+++.+..+.
T Consensus       557 aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            5556778999998642 22222211111122345566554 455566677889999988887766653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.04  E-value=0.11  Score=43.19  Aligned_cols=190  Identities=14%  Similarity=0.218  Sum_probs=106.8

Q ss_pred             cCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCC----CC---eEEEEe-C--CCcEEEEEcc--CCcEE
Q 020461           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SM---TLITGS-A--DQTAKLWNVE--TGAQL   87 (326)
Q Consensus        20 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~----~~---~l~s~~-~--d~~i~~wd~~--~~~~~   87 (326)
                      |...++++....+-+.+||+ +|+.+..+..  +.++.+..-|+    ++   ++++.. .  +.+|++|++.  +++ +
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence            34566777777889999999 8888887754  56677766552    22   223333 3  5789999763  332 2


Q ss_pred             EEEecC-CCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEE--ecC-Cc-EEE
Q 020461           88 FTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW--GPL-NR-TII  162 (326)
Q Consensus        88 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~  162 (326)
                      ..+... .++              ..                                ....+.-+++  +|. ++ +++
T Consensus       114 ~~i~~~~~pv--------------~t--------------------------------~~~~pyGlcly~~~~~g~~yaf  147 (355)
T 3amr_A          114 QSMTDPDHPI--------------AT--------------------------------AINEVYGFTLYHSQKTGKYYAM  147 (355)
T ss_dssp             EECSCTTSCE--------------EC--------------------------------CCSSCCCEEEEECTTTCCEEEE
T ss_pred             eeccccccCc--------------CC--------------------------------CCCCeeEEEEEecCCCCcEEEE
Confidence            111000 000              00                                0011111222  443 33 566


Q ss_pred             EeeCCCcEEEEECC-------CCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecC-----CcceEEEEe
Q 020461          163 SAGEDAIVRIWDTE-------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-----TLELIKTYV  230 (326)
Q Consensus       163 s~~~d~~i~~wd~~-------~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~  230 (326)
                      ....+|.+..|++.       +.+.++++.    -...+-.+..++....|..+-+|..|..++.+     +.+.+..+.
T Consensus       148 V~~k~G~~~q~~l~~~~~g~~~~~lVR~f~----lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          148 VTGKEGEFEQYELKADKNGYISGKKVRAFK----MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             EECSSSEEEEEEEEECTTSCEEEEEEEEEE----CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred             EECCCCeEEEEEEEeCCCCcccceEEEEec----CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence            77778999998883       223344432    23457788888888899999999776666644     344554442


Q ss_pred             ec---cceEEEEe--CCCCCeeEEecCCCcceeEeecc
Q 020461          231 TE---RPVNAVTM--SPLLDHVVLGGGQDASAVTTTDH  263 (326)
Q Consensus       231 ~~---~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~d~  263 (326)
                      ..   ..+..+++  .+++...++.+.++...+..+|.
T Consensus       224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            22   35777777  56565434444444334444554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.88  E-value=0.17  Score=43.13  Aligned_cols=210  Identities=11%  Similarity=-0.055  Sum_probs=113.7

Q ss_pred             cCCceeEEEEccCCC-EEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEcc
Q 020461            9 HERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE   82 (326)
Q Consensus         9 h~~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~   82 (326)
                      ....+..++|++..+ ++.+-..++.|+.++....    .....+.........+++.+.++ +.++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345678899998655 4455556778888887642    22222332334567888887444 44555567889888887


Q ss_pred             CCcEEEEEec-CCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE
Q 020461           83 TGAQLFTFNF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (326)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (326)
                      .......+.. ......+.+.+ +..+.+......    ..  +.+...   +. ..........-...+.+++++++..
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~----~~--I~~~~~---dG-~~~~~~~~~~l~~P~glavd~~~~~  259 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP----AK--IKKGGL---NG-VDIYSLVTENIQWPNGITLDLLSGR  259 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS----CC--EEEEET---TS-CSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC----CE--EEEEeC---CC-CccEEEEECCCCceEEEEEEeCCCE
Confidence            6554433321 12234455554 333433321110    11  111111   11 1112222333356778999988776


Q ss_pred             EEEe-eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          161 IISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       161 l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      |+.+ ...+.|..+|+... ....+....+.......+++.. +..+++....+.|..+|..+++.+..+.
T Consensus       260 lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          260 LYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            6555 45678999998643 2222221111122345666643 3456666677889999988887766664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.82  E-value=0.19  Score=42.64  Aligned_cols=206  Identities=9%  Similarity=-0.057  Sum_probs=110.2

Q ss_pred             CceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      ..+..++|++.++ ++++-...+.|..++...+.....+.........+++.+.+..| ++-...+.|.+.+++......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            3467899997655 45555567888888877665433333223345678888755544 555566778888876544333


Q ss_pred             EEecC-CCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-Eee
Q 020461           89 TFNFD-SPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAG  165 (326)
Q Consensus        89 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~  165 (326)
                      ..... .....+.+.+. ..+.+.....    .  -.+.+...+   .. .............+.++++|++..|+ +-.
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~----~--~~I~r~~~d---G~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~  265 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGN----T--PRIEASSMD---GS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDA  265 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSS----S--CEEEEEETT---SC-SCEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCC----C--CEEEEEeCC---CC-CcEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence            22211 22344555543 3333332211    0  111121111   11 11222223334567899998766555 445


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      ..+.|..+|+.... ...+..  ........+++. .+..+++....+.|..+|..+++.+..+.
T Consensus       266 ~~~~I~~~d~dG~~-~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          266 KHHVIERANLDGSH-RKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTTEEEEECTTSCS-CEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCEEEEEeCCCCe-eEEEEE--CCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            57789999976432 222211  112234566663 44556666677888888866776655554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.80  E-value=0.16  Score=41.68  Aligned_cols=207  Identities=12%  Similarity=-0.035  Sum_probs=111.5

Q ss_pred             CceeEEEEccCCC-EEEeecCCCCeEEEecCC----CCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCC
Q 020461           11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG   84 (326)
Q Consensus        11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~   84 (326)
                      ..+..++|++.++ ++++-..++.|..++...    ......+...-.....+++.+.+..| ++-...+.|.+.++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            4467899998655 555556678888888765    22222222222345778888655544 45456788999998765


Q ss_pred             cEEEEEec-CCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE-eccCccceeEEEEecCCcEE
Q 020461           85 AQLFTFNF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ........ ......+.+.+ +..+.+.....    ...  +.+...+     +..... ....-...+.++++|+++.|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~----~~~--I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~l  178 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----PAK--IKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRL  178 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSS----SCE--EEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCC----CCe--EEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEE
Confidence            44333321 12334555554 33444332211    011  1111111     112222 22233456789999887666


Q ss_pred             EE-eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          162 IS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       162 ~s-~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      +. -...+.|..+|+.. ...+.+............+++. .+..+++....+.|..+|..+++.+..+.
T Consensus       179 Y~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          179 YWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            54 45567899999863 2222221111111234566665 35566666677889999987777655553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.76  E-value=0.23  Score=42.85  Aligned_cols=202  Identities=11%  Similarity=0.099  Sum_probs=96.5

Q ss_pred             cCCceeEEEEccCCCEEEeecCC---CC-eEEEecCCCCee-eeccCcccceEEEEEcC-CCCeEEEEeCCCcEEEEEcc
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKD---HT-PTVWFADNGERL-GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d---~~-v~iw~~~~~~~~-~~~~~h~~~V~~~~~~~-~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .......++|+++|+++++...+   .. +...+...+... ..+. .-..-..++++| ++.+.++-..++.|+.+|..
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            34457899999999966654422   11 222222211110 1111 112235577888 56555555567889999988


Q ss_pred             CCcEEE-EEecCC--CcceeeeecCCe-EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc--------------
Q 020461           83 TGAQLF-TFNFDS--PARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--------------  144 (326)
Q Consensus        83 ~~~~~~-~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  144 (326)
                      +++... .+....  ....+.+.+... +.++.....     .  ++.+..+...........+.+              
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~-----~--I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~  331 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH-----C--IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG  331 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT-----E--EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC-----E--EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence            776522 222211  122366666554 443332210     1  111111100000000000000              


Q ss_pred             -CccceeEEEE---------ecCCcEEEEeeCCCcEEEEECCCCccccccccc-----cC----------cceeeEEEEE
Q 020461          145 -PQGRINRAVW---------GPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TG----------HKKTITSLAK  199 (326)
Q Consensus       145 -~~~~i~~~~~---------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~----------h~~~v~~v~~  199 (326)
                       .-.....+++         .+.+.++++-...++|+.++. ++.. ..+...     .+          .-.....+++
T Consensus       332 a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giav  409 (433)
T 4hw6_A          332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAY  409 (433)
T ss_dssp             SBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEE
T ss_pred             eEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEE
Confidence             1123456777         566666666677788999885 4432 222111     00          1123567788


Q ss_pred             c-CCCCeEEEEeCCCeEEEeec
Q 020461          200 A-ADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       200 s-~~~~~l~s~s~dg~i~iwd~  220 (326)
                      + ++|..+++-..++.|+..++
T Consensus       410 d~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          410 DMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             ETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ECCCCEEEEEeCCCCEEEEEec
Confidence            7 56666666556666776664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.65  E-value=0.26  Score=41.83  Aligned_cols=179  Identities=4%  Similarity=-0.149  Sum_probs=96.4

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCcEEEEEccCCcEEEEEec
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      .|.+..+++ +|+.+ ....|+..++........... ......++|++.++.|+.+ ...+.|..+++...........
T Consensus        80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             eECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            444444533 33333 335677777766554433333 3346788998765555444 4566777777765432111100


Q ss_pred             CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEE
Q 020461           93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVR  171 (326)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~  171 (326)
                                                                          .......+++++.+. ++++-...+.|.
T Consensus       157 ----------------------------------------------------~~~~p~glavd~~~g~lY~~d~~~~~I~  184 (386)
T 3v65_B          157 ----------------------------------------------------GLESPGGLAVDWVHDKLYWTDSGTSRIE  184 (386)
T ss_dssp             ----------------------------------------------------SCSCCCCEEEETTTTEEEEEETTTTEEE
T ss_pred             ----------------------------------------------------CCCCccEEEEEeCCCeEEEEcCCCCeEE
Confidence                                                                001122355565444 344555567788


Q ss_pred             EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe-CC-CeEEEeecCCcceEEEEee--ccceEEEEeCCCCCee
Q 020461          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LD-KSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHV  247 (326)
Q Consensus       172 ~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~  247 (326)
                      +.++.... ...+.  .........++++|.+..|..+. .. +.|...++..... ..+..  ....+.++++|....+
T Consensus       185 ~~~~dg~~-~~~l~--~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~l  260 (386)
T 3v65_B          185 VANLDGAH-RKVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRM  260 (386)
T ss_dssp             ECBTTSCS-CEEEE--CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEE
T ss_pred             EEeCCCCc-eEEee--cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEE
Confidence            88775332 22211  11224467889998665555443 44 6788888764332 22221  2357899999888877


Q ss_pred             EEec
Q 020461          248 VLGG  251 (326)
Q Consensus       248 ~~~~  251 (326)
                      +++-
T Consensus       261 Y~aD  264 (386)
T 3v65_B          261 YWVD  264 (386)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.49  E-value=0.29  Score=40.59  Aligned_cols=147  Identities=10%  Similarity=0.132  Sum_probs=83.9

Q ss_pred             EEeeC--CCcEEEEEC--CCCccccccccc---cCcc-eeeEEEEE--cCC-CC-eEEEEeCCCeEEEeec-------CC
Q 020461          162 ISAGE--DAIVRIWDT--ETGKLLKESDKE---TGHK-KTITSLAK--AAD-GS-HFLTGSLDKSAKLWDA-------RT  222 (326)
Q Consensus       162 ~s~~~--d~~i~~wd~--~~~~~~~~~~~~---~~h~-~~v~~v~~--s~~-~~-~l~s~s~dg~i~iwd~-------~~  222 (326)
                      ++.-.  +++|.+|++  .+++ +..+...   .+-. ..+..+++  ++. +. +++....+|.+..|++       .+
T Consensus        91 as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~  169 (355)
T 3amr_A           91 ASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS  169 (355)
T ss_dssp             EEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred             EeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence            34444  678999966  3433 3333110   0011 34556666  664 43 6888888999999988       34


Q ss_pred             cceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc-ccc-CcceeEEEE--CC
Q 020461          223 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGH-FGPINALAF--NP  298 (326)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~v~~--s~  298 (326)
                      .+.++++.....+..+...+....++++-- +. .++.++-....-       .....+..+ .++ ...+..|++  .+
T Consensus       170 ~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eE-d~-GIw~~da~p~~~-------~~~~~v~~~~~g~l~aDvEGLai~~~~  240 (355)
T 3amr_A          170 GKKVRAFKMNSQTEGMAADDEYGRLYIAEE-DE-AIWKFSAEPDGG-------SNGTVIDRADGRHLTRDIEGLTIYYAA  240 (355)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEET-TT-EEEEEECSTTSC-------SCCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred             ceEEEEecCCCCcceEEEcCCCCeEEEecc-cc-eEEEEeCCcCCC-------CCceEEEEecCCccccCcceEEEEecC
Confidence            577888887778888888888777777532 22 233333211000       001111111 122 236777887  55


Q ss_pred             CCc-eEEeec-CCCcEEEeecC
Q 020461          299 DGK-SFSSGG-EDGYVRLHHFD  318 (326)
Q Consensus       299 d~~-~lat~s-~Dg~i~l~~~~  318 (326)
                      +++ +|+++| .+.+..+|+.+
T Consensus       241 ~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          241 DGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             GGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCEEEEEEcCCCCEEEEEECC
Confidence            655 554444 57788998875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.45  E-value=0.32  Score=40.57  Aligned_cols=181  Identities=6%  Similarity=-0.128  Sum_probs=97.1

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEEEE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTF   90 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~   90 (326)
                      .-+|.+..+++.++++  ..+.|+..++........... ......++|++..+.|+-+. ..+.|..+++.........
T Consensus        35 ~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           35 RRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCcccccccCceeEee--cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            3455555554333333  334577777655544333333 23467888887655554443 5566777776543321110


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCc
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAI  169 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~  169 (326)
                      .                                                    ........+++++.+. .+++-...+.
T Consensus       112 ~----------------------------------------------------~~~~~p~glavd~~~g~ly~~d~~~~~  139 (349)
T 3v64_C          112 S----------------------------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSR  139 (349)
T ss_dssp             C----------------------------------------------------SSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             e----------------------------------------------------CCCCCccEEEEecCCCeEEEEcCCCCe
Confidence            0                                                    0001123456665444 4455556778


Q ss_pred             EEEEECCCCccccccccccCcceeeEEEEEcCCCCeEE-EEeCC-CeEEEeecCCcceEEEEe--eccceEEEEeCCCCC
Q 020461          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLD-KSAKLWDARTLELIKTYV--TERPVNAVTMSPLLD  245 (326)
Q Consensus       170 i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~d-g~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~  245 (326)
                      |.+.++.... ...+..  ........++++|.+..|. +-... +.|...++..... ..+.  .....+.++++|...
T Consensus       140 I~~~~~dG~~-~~~l~~--~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~  215 (349)
T 3v64_C          140 IEVANLDGAH-RKVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGR  215 (349)
T ss_dssp             EEEEETTSCS-CEEEEC--TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTT
T ss_pred             EEEEcCCCCc-eEEEEe--CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCC
Confidence            8888876432 222111  1223467889998555444 44444 7788888764322 2221  123578999998888


Q ss_pred             eeEEec
Q 020461          246 HVVLGG  251 (326)
Q Consensus       246 ~~~~~~  251 (326)
                      .++.+-
T Consensus       216 ~lY~aD  221 (349)
T 3v64_C          216 RMYWVD  221 (349)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.35  E-value=0.68  Score=43.28  Aligned_cols=208  Identities=13%  Similarity=-0.038  Sum_probs=110.5

Q ss_pred             CCceeEEEEccCC-CEEEeecCCCCeEEEecCCC----CeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccC
Q 020461           10 ERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET   83 (326)
Q Consensus        10 ~~~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~   83 (326)
                      ...+..++|++.. .++++-...+.|+.+++...    .....+...-.....|++.+.++.| ++-...+.|.+.+++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            4456789999854 45556666778888887642    2222333233456678888766555 4445678899999876


Q ss_pred             CcEEEEEec-CCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           84 GAQLFTFNF-DSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      ......+.. ......+.+.+. ..+.+......    ..+  .....   + +......+.......+.+++++.+..|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~----~~I--~~~~~---d-G~~~~~lv~~~l~~P~GLavD~~~~~L  572 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP----AKI--KKGGL---N-GVDIYSLVTENIQWPNGITLDLLSGRL  572 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS----CEE--EEEET---T-SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCC----CeE--EEEec---C-CCceEEEEeCCCCCceEEEEecCCCeE
Confidence            554333321 122345555543 33433321110    111  11111   1 112222233334567889999877666


Q ss_pred             EEe-eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          162 ISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       162 ~s~-~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      +.+ .....|...++... ....+....+......+|++..+ ..+++-...+.|...|..+++.+..+
T Consensus       573 YwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          573 YWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            554 45668999988543 33222211111223456666443 44555556778888887777655554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.32  E-value=0.38  Score=40.10  Aligned_cols=205  Identities=9%  Similarity=-0.047  Sum_probs=109.1

Q ss_pred             CceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCe-EEEEeCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      ..+..++|++..+ ++++-...+.|..++...+.....+.........+++.+.+.. .++-...+.|.+.+++......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            3457889997655 4455556788888887765543333322334567888875544 4555567789999887654333


Q ss_pred             EEecC-CCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEe-ccCccceeEEEEecCCcEEE-Ee
Q 020461           89 TFNFD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTII-SA  164 (326)
Q Consensus        89 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~-s~  164 (326)
                      ..... .....+.+.+ +..+.+.....    ...  +.+...+     +.....+ .......+.++++|++..|+ +-
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~----~~~--I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD  221 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGN----TPR--IEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVD  221 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSS----SCE--EEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCC----CCE--EEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence            32211 2234455554 33333332211    011  1111111     1111111 22234567899998776555 44


Q ss_pred             eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      ...+.|..+|+... ....+..  ........+++. ++...++-...+.|...|..+++....+.
T Consensus       222 ~~~~~I~~~~~dG~-~~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          222 AKHHVIERANLDGS-HRKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTTTEEEEEETTSC-SCEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCEEEEEeCCCC-ceEEEEe--CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            55778999998643 2222211  112234566663 44555566667778888766666555543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.27  E-value=0.53  Score=41.22  Aligned_cols=160  Identities=11%  Similarity=0.023  Sum_probs=89.1

Q ss_pred             ceeEEEEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCc---ccceEEEEE-------cCCCCeEEEEeCCC-c---
Q 020461           12 PLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGH---NGAVWCCDV-------SRDSMTLITGSADQ-T---   75 (326)
Q Consensus        12 ~i~~~~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h---~~~V~~~~~-------~~~~~~l~s~~~d~-~---   75 (326)
                      ....|+|+|.  ++++++-...+.|++.|.+++........-   ......++|       +++++.|+.+...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3578999983  445555444577888888776655433321   224788999       99998776666544 2   


Q ss_pred             ---EEEEEccCCcEEEEEecCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeE
Q 020461           76 ---AKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (326)
Q Consensus        76 ---i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (326)
                         |.+.+.....         .     +.. .+                              ...+...+    ....
T Consensus       220 ~~~V~~i~r~~~G---------~-----~~~~~~------------------------------~~~v~~~~----~p~g  251 (496)
T 3kya_A          220 SPSVYIIKRNADG---------T-----FDDRSD------------------------------IQLIAAYK----QCNG  251 (496)
T ss_dssp             EEEEEEEECCTTS---------C-----CSTTSC------------------------------EEEEEEES----CCCC
T ss_pred             CceEEEEecCCCC---------c-----eeeccc------------------------------ceeeccCC----CceE
Confidence               2222211100         0     000 00                              00000111    1234


Q ss_pred             EEEecCC-cEEEEeeCCCcEEEEECC-------CCcc-----------ccccccccCcceeeEEEEEcCCCCe-EEEEeC
Q 020461          152 AVWGPLN-RTIISAGEDAIVRIWDTE-------TGKL-----------LKESDKETGHKKTITSLAKAADGSH-FLTGSL  211 (326)
Q Consensus       152 ~~~~~~~-~~l~s~~~d~~i~~wd~~-------~~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~s~  211 (326)
                      ++++|++ .++++-..++.|..+|+.       ++..           ...+. ..+.......++++|+|.+ .++-+.
T Consensus       252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-~~~~~~~p~~ia~~p~G~~lYvaD~~  330 (496)
T 3kya_A          252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-TIADPSWEFQIFIHPTGKYAYFGVIN  330 (496)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-ECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE-ecCCCCCceEEEEcCCCCEEEEEeCC
Confidence            6778854 455666778889999987       5543           01111 1122234578999999995 555566


Q ss_pred             CCeEEEeec
Q 020461          212 DKSAKLWDA  220 (326)
Q Consensus       212 dg~i~iwd~  220 (326)
                      .+.|+.++.
T Consensus       331 ~h~I~kid~  339 (496)
T 3kya_A          331 NHYFMRSDY  339 (496)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEec
Confidence            778888654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.22  E-value=0.41  Score=39.48  Aligned_cols=193  Identities=7%  Similarity=0.013  Sum_probs=92.9

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCC-CC-eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~-~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      ..+..+.+.+++..++++ .++.+  |...+ |+ .......+...+..+.+.+++++++.+...+..+-+|- .++...
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~  197 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWE  197 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCcee
Confidence            346777777777766655 45543  33333 43 23333345667889999998877665544333333332 122222


Q ss_pred             EEec--CCCcceeeeecCCeEEEEEcCccceec--eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           89 TFNF--DSPARSVDFAVGDKLAVITTDPFMELN--SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        89 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      ....  ......+.+.+++.+.++.....+...  ..-.-|.....+.          ......+..+.+.+++..++.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~g  267 (327)
T 2xbg_A          198 PHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPL----------RRNSVGFLDLAYRTPNEVWLAG  267 (327)
T ss_dssp             EEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTT----------SSCCSCEEEEEESSSSCEEEEE
T ss_pred             ECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCc----------ccCCcceEEEEecCCCEEEEEe
Confidence            1111  112223334444444444433221111  0011111100000          0011246777888766665554


Q ss_pred             eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeec
Q 020461          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (326)
Q Consensus       165 ~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~  220 (326)
                       .++.| .+....++....+.........+.++.+.+++ .+++++.+|.|.-++-
T Consensus       268 -~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          268 -GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             -STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             -CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence             46766 44455454443332111223456778776554 5777778898776653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.75  E-value=0.6  Score=38.95  Aligned_cols=101  Identities=9%  Similarity=0.017  Sum_probs=57.7

Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCCCcc--ccccccccCcceeeEEEEEcCC---CCeEEEEeC-C-----CeE
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD---GSHFLTGSL-D-----KSA  215 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~h~~~v~~v~~s~~---~~~l~s~s~-d-----g~i  215 (326)
                      .....++|.|+++++++ ..++.|.+++  +++.  +..+.....-......++++|+   +..|..+.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34568899999985554 5569999998  3332  1111111112345789999998   444444433 2     567


Q ss_pred             EEeecCCcc-----eE-EEEee----ccceEEEEeCCCCCeeEEec
Q 020461          216 KLWDARTLE-----LI-KTYVT----ERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       216 ~iwd~~~~~-----~~-~~~~~----~~~~~~~~~s~~~~~~~~~~  251 (326)
                      ..++.....     .+ ..+..    ......+++.|++. ++++.
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~  152 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT  152 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence            777776431     11 11221    12356889999884 55443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.64  E-value=1.8  Score=42.32  Aligned_cols=76  Identities=17%  Similarity=0.099  Sum_probs=49.2

Q ss_pred             CCceeEEEEccC------CCEEEeecC-CCCeEEEecCCCCeeee--ccC--cccceEEEEEcCCCCeEEEEeCCCcEEE
Q 020461           10 ERPLTYLKYNKD------GDLLFSCAK-DHTPTVWFADNGERLGT--YRG--HNGAVWCCDVSRDSMTLITGSADQTAKL   78 (326)
Q Consensus        10 ~~~i~~~~~s~~------~~~l~s~~~-d~~v~iw~~~~~~~~~~--~~~--h~~~V~~~~~~~~~~~l~s~~~d~~i~~   78 (326)
                      ...|.|+++.|.      +++++.|.. |++++|+.+.+.+.+..  +.+  -...|.-+.+ ....+|+.|-.||.+--
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEE
Confidence            457899998864      468888886 99999999987666543  222  1112333334 23357888889998765


Q ss_pred             EEc--cCCcE
Q 020461           79 WNV--ETGAQ   86 (326)
Q Consensus        79 wd~--~~~~~   86 (326)
                      +.+  .+++.
T Consensus       632 ~~~d~~tg~l  641 (1158)
T 3ei3_A          632 FGLNIETGLL  641 (1158)
T ss_dssp             EEECTTTCCE
T ss_pred             EEEcCCCCcc
Confidence            544  44444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.48  E-value=0.93  Score=37.83  Aligned_cols=178  Identities=13%  Similarity=0.087  Sum_probs=86.0

Q ss_pred             EEEeccCccceeEEEEecCCcEEEEee------------CCCcEEEEECCCCc-ccccccccc----CcceeeEEEEEcC
Q 020461          139 VLILKGPQGRINRAVWGPLNRTIISAG------------EDAIVRIWDTETGK-LLKESDKET----GHKKTITSLAKAA  201 (326)
Q Consensus       139 ~~~~~~~~~~i~~~~~~~~~~~l~s~~------------~d~~i~~wd~~~~~-~~~~~~~~~----~h~~~v~~v~~s~  201 (326)
                      ...+++.....-.+...|+|..+++++            .+|.|.++|.++.. ....+....    ...-....+.+.+
T Consensus        42 C~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~  121 (355)
T 3sre_A           42 CNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFI  121 (355)
T ss_dssp             EEECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEE
T ss_pred             CEEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEE
Confidence            333444333445666778765555542            79999999987421 112221111    0122344555443


Q ss_pred             --CCC-eEEEEe-C--CCeEEEeecCCcc----eEEEEeec--cceEEEEeCCCCCeeEEecCC--CcceeEeecc--cC
Q 020461          202 --DGS-HFLTGS-L--DKSAKLWDARTLE----LIKTYVTE--RPVNAVTMSPLLDHVVLGGGQ--DASAVTTTDH--RA  265 (326)
Q Consensus       202 --~~~-~l~s~s-~--dg~i~iwd~~~~~----~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~d~--~~  265 (326)
                        ++. +|+.+. .  +.+|.+|++....    .+.++...  ...|.+.+.+++...+.....  +... ...+.  ..
T Consensus       122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~-~~~e~~~~~  200 (355)
T 3sre_A          122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL-KSWEMHLGL  200 (355)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH-HHHHHHTTC
T ss_pred             CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc-ccchhhccC
Confidence              443 444443 2  4678887765432    22222221  347788888877644432111  0000 00000  00


Q ss_pred             ceeeeEeecccceeeeccccccCcceeEEEECCCCceEE-eecCCCcEEEeecCCC
Q 020461          266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS-SGGEDGYVRLHHFDPD  320 (326)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la-t~s~Dg~i~l~~~~~~  320 (326)
                      ..-.+..++...   +..+...-..-+.++||||++.|. +-+..+.|..|+++++
T Consensus       201 ~~g~vyr~d~~~---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~  253 (355)
T 3sre_A          201 AWSFVTYYSPND---VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  253 (355)
T ss_dssp             CCEEEEEECTTC---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CccEEEEEECCe---EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence            111223333211   111111123468899999998764 4456788988888754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.40  E-value=1.1  Score=38.13  Aligned_cols=99  Identities=11%  Similarity=-0.020  Sum_probs=59.4

Q ss_pred             eeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC--CCeEEEeecCCcce
Q 020461          149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL--DKSAKLWDARTLEL  225 (326)
Q Consensus       149 i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~--dg~i~iwd~~~~~~  225 (326)
                      ...+++++.++ ++++-...+.|.+.++..... ..+..  ........++++|.+.+|.-...  .+.|...++.....
T Consensus       161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~--~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEE--CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             cccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEe--CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            44566666444 445556677888888764332 22211  12234678999986555554442  36788888764332


Q ss_pred             EEEEee--ccceEEEEeCCCCCeeEEec
Q 020461          226 IKTYVT--ERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       226 ~~~~~~--~~~~~~~~~s~~~~~~~~~~  251 (326)
                       ..+..  -...+.+++++....++.+-
T Consensus       238 -~~~~~~~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          238 -YSLVTENIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             -EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             -EEEEECCCCceEEEEEEeCCCEEEEEE
Confidence             22222  24678999998888887764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.30  E-value=0.98  Score=37.03  Aligned_cols=205  Identities=9%  Similarity=-0.042  Sum_probs=108.6

Q ss_pred             ceeEEEEccCC-CEEEeecCCCCeEEEecCCCCeee-eccCcccceEEEEEcCCCC-eEEEEeCCCcEEEEEccCCcEEE
Q 020461           12 PLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        12 ~i~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      ....++|++.. .++.+-...+.|..++...+.... .+...-.....+++.+.+. +.++-...+.|.+++++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            35678898854 455555667788888876553211 1222223456788876444 44555566789999987644332


Q ss_pred             EEe-cCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-Eee
Q 020461           89 TFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAG  165 (326)
Q Consensus        89 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~  165 (326)
                      ... .......+.+.+. ..+.+.....    ..  .+.+...+   .. .........-...+.++++|++..|+ +=.
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~----~~--~I~r~~~d---G~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~  185 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGE----VP--KIERAGMD---GS-SRFIIINSEIYWPNGLTLDYEEQKLYWADA  185 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSS----SC--EEEEEETT---SC-SCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCC----CC--EEEEEEcC---CC-CeEEEEECCCCCccEEEEeccCCEEEEEEC
Confidence            221 1122344445442 3333332110    01  11111111   11 11112222234567899999776555 445


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      ..+.|..+|+... ....+..  +.......+++..+ ..+.+-...+.|..+|..+++....+.
T Consensus       186 ~~~~I~~~d~dG~-~~~~~~~--~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          186 KLNFIHKSNLDGT-NRQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTTEEEEEETTSC-SCEEEEC--SCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCEEEEEcCCCC-ceEEEec--CCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCceEEEe
Confidence            5778999998632 2222211  11233456666543 455666677889999988877665554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.23  E-value=0.95  Score=36.48  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=36.4

Q ss_pred             CCcEEEEeeCC-----CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeEEEeecCCcc
Q 020461          157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE  224 (326)
Q Consensus       157 ~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i~iwd~~~~~  224 (326)
                      +++.++.|+.+     ..+.+||+.+.+.... .........-..+.  -++..++.|+.+     ..+.+||+++.+
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            56677777755     4588899877654321 11111111111222  256677777764     458899988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.16  E-value=0.61  Score=43.01  Aligned_cols=157  Identities=8%  Similarity=-0.014  Sum_probs=83.5

Q ss_pred             cceeEEEEecCCcEEEEe-eCCCcEEEEECCCC---ccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecC
Q 020461          147 GRINRAVWGPLNRTIISA-GEDAIVRIWDTETG---KLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~---~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~  221 (326)
                      ..+..++|++.+..|+.. ...+.|+.+++...   .....+.  .........+++++. +.++++-...+.|.+.++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i--~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            345678899876655544 45678999998641   1111111  011123456777754 4455565667889999987


Q ss_pred             CcceEEEEee--ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          222 TLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       222 ~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                      .... ..+..  ....+.++++|.+..++++.......+...+.. +.         ....+.  .......+.|+|+|+
T Consensus       484 g~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~---------~~~~l~--~~~l~~PnGlavd~~  550 (699)
T 1n7d_A          484 GVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV---------DIYSLV--TENIQWPNGITLDLL  550 (699)
T ss_dssp             SCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SC---------CCCEES--CSSCSSCCCEEECTT
T ss_pred             CCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CC---------CeeEEE--eCCCCCccEEEEecc
Confidence            5433 33322  235678888887777666542211122221110 00         000010  011234578999987


Q ss_pred             Cce-EEeecCCCcEEEeecC
Q 020461          300 GKS-FSSGGEDGYVRLHHFD  318 (326)
Q Consensus       300 ~~~-lat~s~Dg~i~l~~~~  318 (326)
                      +.. ..+-+..+.|..++++
T Consensus       551 ~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          551 SGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             TCCEEEEETTTTEEEEECSS
T ss_pred             CCEEEEEecCCCeEEEEccC
Confidence            554 4555556777776664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.97  E-value=0.61  Score=39.78  Aligned_cols=114  Identities=13%  Similarity=0.086  Sum_probs=66.0

Q ss_pred             CCCCeEEEEeCCCeEEEeecCCcceEEEEeec-----cceEEEEeCCCCCeeEEecCCCcceeEeecccCce--------
Q 020461          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK--------  267 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~--------  267 (326)
                      .+|..++.+- ++.||.-++......+.+..+     ..+.-+.++|+|+.+++.|...-..+...+.....        
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence            3444444433 256666665533233333332     14566899999999998876655544444322111        


Q ss_pred             eeeEeecccceeeeccccccCcceeEEEECCC---CceEEeecCCCcEEEeecCCC
Q 020461          268 FEAKFFDKILQEEIGGVKGHFGPINALAFNPD---GKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d---~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ...+.|....   ..  .....+|..+.|+|-   +..|++=..|++||+|++...
T Consensus       109 ~q~~ty~l~~---~~--~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          109 FQIFHYSIDE---EE--VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             TEEEEEEGGG---CC----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cceeEEEcCC---cc--cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence            1111222110   00  113578999999995   457999999999999999863

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.90  E-value=1.4  Score=36.71  Aligned_cols=102  Identities=9%  Similarity=-0.074  Sum_probs=57.2

Q ss_pred             ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCc-cccccccccCcceeeEEEEEcCC---CCeEEEEeC----C----C
Q 020461          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD---GSHFLTGSL----D----K  213 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~---~~~l~s~s~----d----g  213 (326)
                      ......++|.|+++++++ ..++.|+++|. +++ .+..+.....-......++++|+   +..|..+..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345678899999885554 55699999973 443 11111101111345788999997   444444332    3    5


Q ss_pred             eEEEeecCCc-------ceE-EEEee--ccceEEEEeCCCCCeeEE
Q 020461          214 SAKLWDARTL-------ELI-KTYVT--ERPVNAVTMSPLLDHVVL  249 (326)
Q Consensus       214 ~i~iwd~~~~-------~~~-~~~~~--~~~~~~~~~s~~~~~~~~  249 (326)
                      .|..++....       +.+ ..+..  ....+.++|.|++...++
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            6777776543       111 11221  123567899998864443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.65  E-value=1.5  Score=35.90  Aligned_cols=157  Identities=8%  Similarity=0.011  Sum_probs=85.7

Q ss_pred             ceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcce
Q 020461          148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL  225 (326)
Q Consensus       148 ~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~  225 (326)
                      ....+.|++.++ .+.+-...+.|..+++..+.....+..  ........+++++. +...++-...+.|.++++.....
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  113 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  113 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence            456788988655 445656678899999875532111110  11123567888864 44555666678899999875332


Q ss_pred             EEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCce-
Q 020461          226 IKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS-  302 (326)
Q Consensus       226 ~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-  302 (326)
                       ..+.  .....+.+++.|....++.+.......+...+.. +...         ..+  ...--..-+.++++|++.. 
T Consensus       114 -~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~---------~~~--~~~~l~~Pnglavd~~~~~l  180 (318)
T 3sov_A          114 -KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSR---------FII--INSEIYWPNGLTLDYEEQKL  180 (318)
T ss_dssp             -EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSC---------EEE--ECSSCSCEEEEEEETTTTEE
T ss_pred             -EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCe---------EEE--EECCCCCccEEEEeccCCEE
Confidence             2222  2245788888887666665532111122221111 0000         001  0011234578999986554 


Q ss_pred             EEeecCCCcEEEeecCC
Q 020461          303 FSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       303 lat~s~Dg~i~l~~~~~  319 (326)
                      ..+-+..+.|..++++-
T Consensus       181 Y~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          181 YWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEETTTTEEEEEETTS
T ss_pred             EEEECCCCEEEEEcCCC
Confidence            45555567777777664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.63  E-value=1.7  Score=36.28  Aligned_cols=59  Identities=5%  Similarity=-0.032  Sum_probs=37.3

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCC-eeeecc---CcccceEEEEEcCC---CCeEEEE
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYR---GHNGAVWCCDVSRD---SMTLITG   70 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-~~~~~~---~h~~~V~~~~~~~~---~~~l~s~   70 (326)
                      ......++|.|+|+++++ ..++.|++++ .+++ .+..+.   .-......++++|+   +..|+.+
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            345689999999986665 4558888886 4454 222221   12345788999997   4444443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=94.47  E-value=1.7  Score=35.55  Aligned_cols=164  Identities=12%  Similarity=-0.041  Sum_probs=91.3

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE-eCCCcEEEEEccCCc---EEEEEecCCCcceeeeecCCeE
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVETGA---QLFTFNFDSPARSVDFAVGDKL  107 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~  107 (326)
                      ..|+..++.+.+....+.. -.....++|+++++.|+.+ ...+.|..+++.+..   ....                  
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~------------------   70 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------------   70 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE------------------
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE------------------
Confidence            4678888877665444433 3456789998866555444 455777777765410   0000                  


Q ss_pred             EEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc-EEEEeeCCCcEEEEECCCCcccccccc
Q 020461          108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDK  186 (326)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~  186 (326)
                                                       .+.........+++++.+. .+++-...+.|.+.|+.... ...+..
T Consensus        71 ---------------------------------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~  116 (316)
T 1ijq_A           71 ---------------------------------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR  116 (316)
T ss_dssp             ---------------------------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEE
T ss_pred             ---------------------------------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEE
Confidence                                             0000011234466665444 44455667889999876432 222211


Q ss_pred             ccCcceeeEEEEEcCCCCeEEEEeC-C-CeEEEeecCCcceEEEEee--ccceEEEEeCCCCCeeEEec
Q 020461          187 ETGHKKTITSLAKAADGSHFLTGSL-D-KSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       187 ~~~h~~~v~~v~~s~~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~  251 (326)
                        ........++++|.+..|..+.. . +.|...++.. .....+..  -...+.+++++++..++.+-
T Consensus       117 --~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          117 --ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             --CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             --CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence              11235678899986665554443 3 6788887753 33333321  24578999998888777664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.33  E-value=2  Score=35.86  Aligned_cols=56  Identities=14%  Similarity=0.293  Sum_probs=37.5

Q ss_pred             eeEEEEEcCCCCeEEEEe-CCCeEEEeecCC-cce--EEEEeeccceEEEEeCCC-CCeeE
Q 020461          193 TITSLAKAADGSHFLTGS-LDKSAKLWDART-LEL--IKTYVTERPVNAVTMSPL-LDHVV  248 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~s~~-~~~~~  248 (326)
                      ....++++||++.|..+. ..+.|..|+++. +..  .+.+........+++.++ |+..+
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence            467899999998776654 578899999863 322  122333456778888884 66444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.31  E-value=3.4  Score=38.59  Aligned_cols=99  Identities=13%  Similarity=0.008  Sum_probs=60.6

Q ss_pred             eeEEEEecCCc-EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC-C-CeEEEeecCCcce
Q 020461          149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-D-KSAKLWDARTLEL  225 (326)
Q Consensus       149 i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~-d-g~i~iwd~~~~~~  225 (326)
                      ...+++++.++ ++++-...++|.+.++.... ...+..  ........|+++|.+.+|.-+.. + +.|...++.... 
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-  548 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-  548 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-
Confidence            34566776664 44455667889999886432 222211  12234788999987555554443 2 678888876433 


Q ss_pred             EEEEeec--cceEEEEeCCCCCeeEEec
Q 020461          226 IKTYVTE--RPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       226 ~~~~~~~--~~~~~~~~s~~~~~~~~~~  251 (326)
                      ...+...  ...+.+++++....++++-
T Consensus       549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          549 IYSLVTENIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence            3333322  4688999998877777763

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.57  E-value=4.1  Score=36.88  Aligned_cols=205  Identities=10%  Similarity=-0.018  Sum_probs=105.3

Q ss_pred             CCceeEEEEccCCCEEE-eecCCCCeEEEecCCCCe-eeeccCcccceEEEEEcCCCCeEEE-EeCCCcEEEEEccCCcE
Q 020461           10 ERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVETGAQ   86 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~   86 (326)
                      ......++|++.+..|+ +=...+.|..++...... ...+..--.....+++.+.++.|+. -...+.|.+.+++....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            34457888998665544 444567777777654422 2223322346788999886555544 45678899999876543


Q ss_pred             EEEE-ecCCCcceeeeecC-CeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           87 LFTF-NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        87 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      .... ..-.....+.+.+. +.+.+.....    ..  .+.+...   +.. .........-...+.++++++++.|+.+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~----~~--~I~r~~~---dG~-~~~~l~~~~~~~P~Glald~~~~~LY~a  188 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGE----VP--KIERAGM---DGS-SRFIIINSEIYWPNGLTLDYEEQKLYWA  188 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSS----SC--EEEEEET---TSC-SCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCC----CC--EEEEEEC---CCC-ceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence            3332 11122344555543 3343332110    01  1111111   111 1112222233456789999876655544


Q ss_pred             -eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE
Q 020461          165 -GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (326)
Q Consensus       165 -~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (326)
                       ...+.|...|+.... ...+..  +.......+++..+ ...+|-...+.|...|..+++....
T Consensus       189 D~~~~~I~~~~~dG~~-~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          189 DAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             ETTTCCEEEESSSCCE-EC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             eCCCCeEEEecCCCCc-cEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence             556788888886432 222211  11122346677666 4555555678888888877765443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.54  E-value=2  Score=33.12  Aligned_cols=66  Identities=6%  Similarity=-0.024  Sum_probs=39.3

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccce--------EEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV--------WCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V--------~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      ..+..++|+|+|.+.+.  .+|.+.-.+..+.... .+-+-...|        .++.|.+++.+-++  .||.|.-++.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            46789999999997666  5565444443332111 111112223        57888999876665  6687765553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.47  E-value=2.5  Score=33.98  Aligned_cols=64  Identities=9%  Similarity=0.098  Sum_probs=35.4

Q ss_pred             cCCCEEEeecCC-----CCeEEEecCCCC---eeee--ccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEEEccCC
Q 020461           20 KDGDLLFSCAKD-----HTPTVWFADNGE---RLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG   84 (326)
Q Consensus        20 ~~~~~l~s~~~d-----~~v~iw~~~~~~---~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~   84 (326)
                      .++++++.|+.+     ..+.+||..+.+   ....  +......-.++.+  +++.++.|+.+     ..+.+||+.+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            456777777654     467888888776   4322  2111111111222  56666777654     35778888776


Q ss_pred             c
Q 020461           85 A   85 (326)
Q Consensus        85 ~   85 (326)
                      +
T Consensus       139 ~  139 (301)
T 2vpj_A          139 Q  139 (301)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.37  E-value=2.6  Score=33.96  Aligned_cols=59  Identities=10%  Similarity=0.066  Sum_probs=29.1

Q ss_pred             EEEeecC--CCCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC----CcEEEEEccCC
Q 020461           24 LLFSCAK--DHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETG   84 (326)
Q Consensus        24 ~l~s~~~--d~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~   84 (326)
                      +++.|+.  ...+.+||..+.+....  +......-.++.  .+++.++.|+.+    ..+.+||+.++
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~   80 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKD   80 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTT
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCC
Confidence            4445554  35778888887765422  111111111111  255666666654    34555665544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.26  E-value=2.7  Score=33.80  Aligned_cols=65  Identities=15%  Similarity=0.150  Sum_probs=35.0

Q ss_pred             CCcEEEEeeCC-------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeEEEeecCCcc
Q 020461          157 LNRTIISAGED-------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE  224 (326)
Q Consensus       157 ~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i~iwd~~~~~  224 (326)
                      +++.++.|+.+       ..+.+||+.+.+.... ............+.  -++..++.|+.+     ..+.+||+++.+
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-AEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-CCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            45666666643       3588899877654321 11111111111222  256677777764     358889988754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.23  E-value=2.7  Score=33.82  Aligned_cols=64  Identities=6%  Similarity=0.091  Sum_probs=36.1

Q ss_pred             cCCCEEEeecCC----CCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC------CcEEEEEccCCc
Q 020461           20 KDGDLLFSCAKD----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGA   85 (326)
Q Consensus        20 ~~~~~l~s~~~d----~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~   85 (326)
                      .++.+++.|+.+    ..+.+||..+.+....  +......-..+.+  +++.++.|+.+      ..+.+||+.+.+
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            356677777654    5667788877754322  2111111111222  56677777765      457888988764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.95  E-value=2.5  Score=35.12  Aligned_cols=57  Identities=18%  Similarity=0.090  Sum_probs=37.9

Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE--EEEe-----eccceEEEEeCCC---CCeeEE
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYV-----TERPVNAVTMSPL---LDHVVL  249 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-----~~~~~~~~~~s~~---~~~~~~  249 (326)
                      ....+++.|||..+++--..|.|++++...++..  ..+.     ...-...++++|+   ...+++
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv   99 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA   99 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence            4578999999987777665899999987655432  1111     1234678999985   344554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.27  E-value=4.3  Score=33.69  Aligned_cols=72  Identities=7%  Similarity=0.000  Sum_probs=45.5

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--eeecc---CcccceEEEEEcCC---CCeEEEEeC-C-----Cc
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR---GHNGAVWCCDVSRD---SMTLITGSA-D-----QT   75 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~~~~~---~h~~~V~~~~~~~~---~~~l~s~~~-d-----~~   75 (326)
                      ......++|.|+|+++++ ..++.|++++  +++.  +..+.   .-......++++|+   +..|+.+.. .     ..
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            445689999999996665 4568888887  4432  22221   12345788999998   555544433 2     56


Q ss_pred             EEEEEccCC
Q 020461           76 AKLWNVETG   84 (326)
Q Consensus        76 i~~wd~~~~   84 (326)
                      |..++...+
T Consensus       107 v~r~~~~~~  115 (352)
T 2ism_A          107 VVRLRHLGE  115 (352)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEeCCC
Confidence            777777643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.23  E-value=4.4  Score=33.65  Aligned_cols=110  Identities=10%  Similarity=-0.020  Sum_probs=61.6

Q ss_pred             EeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccc--cccc-cccCcceeeEEEEEcCC----CCeEEEE--eC
Q 020461          141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESD-KETGHKKTITSLAKAAD----GSHFLTG--SL  211 (326)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~-~~~~h~~~v~~v~~s~~----~~~l~s~--s~  211 (326)
                      .+.........++|.|++.++++--..|.|++++...++..  ..+. ....-......++++|+    +...++-  ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            33344455678999999998777666899999986655431  1111 11122456789999985    4333332  23


Q ss_pred             CCeEEEeecCCc----------ceE-EEEee--ccceEEEEeCCCCCeeEEe
Q 020461          212 DKSAKLWDARTL----------ELI-KTYVT--ERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       212 dg~i~iwd~~~~----------~~~-~~~~~--~~~~~~~~~s~~~~~~~~~  250 (326)
                      ++.|.-|.....          +.+ ..+..  .+....+.|.|++...+..
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~  157 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT  157 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE
Confidence            445555554431          111 11211  2245678999988544443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.23  E-value=3.8  Score=33.03  Aligned_cols=65  Identities=12%  Similarity=0.068  Sum_probs=36.1

Q ss_pred             CCcEEEEeeCC-----CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-----CeEEEeecCCcc
Q 020461          157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE  224 (326)
Q Consensus       157 ~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-----g~i~iwd~~~~~  224 (326)
                      +++.++.|+.+     ..+.+||+.+.+... +.........-.++.+  ++..++.|+.+     ..+.+||+.+.+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEee-CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            45667777664     458889987665432 1111111111122222  56677777664     458899988754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.12  E-value=4.5  Score=33.59  Aligned_cols=102  Identities=11%  Similarity=0.009  Sum_probs=54.3

Q ss_pred             cceeEEEEecCCc-EEEEeeCCCcEEEEECCCCccc---ccccc-ccCcceeeEEEEEcCC----CCeEEEEeC------
Q 020461          147 GRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLL---KESDK-ETGHKKTITSLAKAAD----GSHFLTGSL------  211 (326)
Q Consensus       147 ~~i~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~---~~~~~-~~~h~~~v~~v~~s~~----~~~l~s~s~------  211 (326)
                      .....++|.|+++ +++ +...|.|++++.. ++..   ..+.. ..........++++|+    +...++-+.      
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3456789999998 555 4567999999853 3221   11110 0111334688999995    444444332      


Q ss_pred             -CCeEEEeecCCc--c--eEEEEe---e-----ccceEEEEeCCCCCeeEEec
Q 020461          212 -DKSAKLWDARTL--E--LIKTYV---T-----ERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       212 -dg~i~iwd~~~~--~--~~~~~~---~-----~~~~~~~~~s~~~~~~~~~~  251 (326)
                       ...|..++....  .  ..+.+.   .     ......++|.|++. ++++.
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~  147 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIAL  147 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEE
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEE
Confidence             224555655422  1  111111   1     12256799999884 44443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.94  E-value=5.7  Score=34.37  Aligned_cols=58  Identities=9%  Similarity=-0.009  Sum_probs=36.2

Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE--EEEe-------eccceEEEEeCCC---CCeeEEe
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYV-------TERPVNAVTMSPL---LDHVVLG  250 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-------~~~~~~~~~~s~~---~~~~~~~  250 (326)
                      ....+++.|+|..+++-...+.|++++..+++..  ..+.       .+.-...++++|+   ...++++
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            3568999999987766554457888876554432  1211       1123458999996   5556554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.58  E-value=5.9  Score=33.85  Aligned_cols=73  Identities=15%  Similarity=0.188  Sum_probs=50.0

Q ss_pred             ccceeEEEEecCC---cEEEEeeCCCcEEEEECCCCccc-cccc------cccCcceeeEEEEEcCCCCeEEEEe--CCC
Q 020461          146 QGRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLL-KESD------KETGHKKTITSLAKAADGSHFLTGS--LDK  213 (326)
Q Consensus       146 ~~~i~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~-~~~~------~~~~h~~~v~~v~~s~~~~~l~s~s--~dg  213 (326)
                      ..+|.++.|||.+   ..|++-..|+.|++||+...... ..+.      ........+.+++|.+++-.|...+  ..|
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~G  203 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGG  203 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCC
Confidence            5789999999975   58999999999999999752211 0111      1112336788899998877666644  667


Q ss_pred             eEEEe
Q 020461          214 SAKLW  218 (326)
Q Consensus       214 ~i~iw  218 (326)
                      -|+-.
T Consensus       204 DIYAl  208 (452)
T 3pbp_A          204 DIFAF  208 (452)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            66544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.80  E-value=9.2  Score=34.66  Aligned_cols=201  Identities=8%  Similarity=-0.036  Sum_probs=108.3

Q ss_pred             CceeEEEEccCCCE-EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~~-l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      ..+..++|++.... +++-..++.|+.++.........+..-......+++.+.++.| ++-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            35678999986655 4455567888888876544333333222346678887665555 444456788888887654322


Q ss_pred             EE-ecCCCcceeeeec-CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe-e
Q 020461           89 TF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-G  165 (326)
Q Consensus        89 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~  165 (326)
                      .. ..-.....+.+.+ ...+.+.....    ..  .+.+...   +..  ....+.......+.++++++++.|+.+ .
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~----~~--~I~r~~~---dG~--~~~~l~~~~~~P~GlalD~~~~~LY~aD~  185 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGG----KP--KIDRAAM---DGS--ERTTLVPNVGRANGLTIDYAKRRLYWTDL  185 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSS----SC--EEEEEET---TSC--SCEEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCC----CC--EEEEEeC---CCC--ceEEEECCCCCcceEEEccccCEEEEEEC
Confidence            22 1112234455554 23333332110    01  1111111   111  111222234567789999987666544 5


Q ss_pred             CCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (326)
Q Consensus       166 ~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (326)
                      ..+.|...|+..... ..+...   ......+++.. +...+|-...+.|...|..+++...
T Consensus       186 ~~~~I~~~d~dG~~~-~v~~~~---l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          186 DTNLIESSNMLGLNR-EVIADD---LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             TTTEEEEEETTSCSC-EEEEEC---CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CCCEEEEEcCCCCce-EEeecc---CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence            577899999864332 222211   22345677665 4455555567888888876665433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.04  E-value=7.6  Score=31.06  Aligned_cols=63  Identities=10%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             CCCEEEeecCC-----CCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCCC-----cEEEEEccCCc
Q 020461           21 DGDLLFSCAKD-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVETGA   85 (326)
Q Consensus        21 ~~~~l~s~~~d-----~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~   85 (326)
                      ++.+++.|+.+     ..+.+||..+.+....  +......-.++.+  +++.++.|+.++     .+.+||+.+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence            56677777644     3567788877654322  2111111111222  566667777553     46677877654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=88.96  E-value=8.7  Score=31.62  Aligned_cols=52  Identities=13%  Similarity=0.168  Sum_probs=27.2

Q ss_pred             CCCEEEeecC-C---------CCeEEEecCCCCeeeeccCc-ccce-EEEEEcCCCCeEEEEeCC
Q 020461           21 DGDLLFSCAK-D---------HTPTVWFADNGERLGTYRGH-NGAV-WCCDVSRDSMTLITGSAD   73 (326)
Q Consensus        21 ~~~~l~s~~~-d---------~~v~iw~~~~~~~~~~~~~h-~~~V-~~~~~~~~~~~l~s~~~d   73 (326)
                      ++++++.|+. +         ..+.+||..+.+....-.-. ...- .++.. .+++.++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            5676666665 2         46778888877654321111 1111 11112 456777777754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.74  E-value=3.6  Score=31.67  Aligned_cols=107  Identities=12%  Similarity=0.105  Sum_probs=55.6

Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce------EEEEee--ccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLEL------IKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~  264 (326)
                      .+..++++|+|.+.+.  .+|.++-.+..+.+.      -..+-.  -....++.+.|++...++   .++. +.-.+..
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav---~dG~-iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV---SKDK-LYKASPP  115 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE---ETTE-EEEESCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe---CCCE-EEEeCCC
Confidence            5679999999875555  677777767654211      111100  011367888888766555   2222 2222211


Q ss_pred             CceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcE
Q 020461          265 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYV  312 (326)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i  312 (326)
                      .....  .|-.. ...++.  +-=..+..|.|.|+|.+.|..  |+.+
T Consensus       116 ~~~~~--~Wl~~-a~~vg~--~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          116 QSDTD--NWIAR-ATEVGS--GGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             CSTTC--CHHHH-SEEEEC--SSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             cCCCC--ceecc-ccEecc--CCCCceEEEEECCCceEEEEe--CCcE
Confidence            11100  11100 111110  001357899999999998877  7765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=88.46  E-value=20  Score=35.20  Aligned_cols=32  Identities=16%  Similarity=0.072  Sum_probs=26.4

Q ss_pred             CcceeEEEECCC------CceEEeecC-CCcEEEeecCC
Q 020461          288 FGPINALAFNPD------GKSFSSGGE-DGYVRLHHFDP  319 (326)
Q Consensus       288 ~~~v~~v~~s~d------~~~lat~s~-Dg~i~l~~~~~  319 (326)
                      ...|.|+++.|.      +.++|.|.+ |++|+|++++.
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            357999999863      468999997 99999999974

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.00  E-value=11  Score=30.37  Aligned_cols=63  Identities=10%  Similarity=0.076  Sum_probs=34.1

Q ss_pred             CCCEEEeecC----C-----CCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEeCC-----CcEEEEEccCC
Q 020461           21 DGDLLFSCAK----D-----HTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG   84 (326)
Q Consensus        21 ~~~~l~s~~~----d-----~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~   84 (326)
                      ++++++.|+.    +     ..+.+||..+.+....  +......-..+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5666666665    2     4677888877654322  1111111111222  56666666643     35778888765


Q ss_pred             c
Q 020461           85 A   85 (326)
Q Consensus        85 ~   85 (326)
                      +
T Consensus       148 ~  148 (308)
T 1zgk_A          148 E  148 (308)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.12  E-value=34  Score=34.46  Aligned_cols=129  Identities=6%  Similarity=0.063  Sum_probs=74.9

Q ss_pred             CCeEEEecCCCCeeeeccCcccceE--EEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVW--CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~--~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (326)
                      .+|.|-|+.++..+..     .++.  +.-.+|..+.++--. ..+++++|+++...+..+.++.++..-.|...+.+..
T Consensus        48 ~~vvIidl~~~~~~~r-----rpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~l  121 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL  121 (1630)
T ss_pred             ceEEEEECCCCCCccc-----ccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEE
Confidence            3566667666543311     1111  122467666665554 6789999999888888888877777777877777776


Q ss_pred             EEcCccceeceeeeeeeeccCCCCCCCceEEEeccC----ccceeEEEEecCCcEEEEe-------eCCCcEEEEECCCC
Q 020461          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP----QGRINRAVWGPLNRTIISA-------GEDAIVRIWDTETG  178 (326)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~s~-------~~d~~i~~wd~~~~  178 (326)
                      ++.....       -|.+..     ...+...+.-|    ...|.....+++.++++..       .-.|.+.+|..+.+
T Consensus       122 VT~~aVy-------HW~~~~-----~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          122 VTDNAVY-------HWSMEG-----ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             EcCCeEE-------EeccCC-----CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence            6554332       222211     11222222222    2456666677777776532       23577888887654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.10  E-value=17  Score=31.41  Aligned_cols=29  Identities=14%  Similarity=0.170  Sum_probs=22.6

Q ss_pred             eeEEEEEcCCCC-eEEEEeCCCeEEEeecC
Q 020461          193 TITSLAKAADGS-HFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       193 ~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~  221 (326)
                      ....+++.|+|. .|+.+...|.|++++..
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            357889999986 56666778999999754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=81.75  E-value=8.3  Score=31.82  Aligned_cols=31  Identities=16%  Similarity=0.190  Sum_probs=26.8

Q ss_pred             CCCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461          202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (326)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  232 (326)
                      .+..+++|+.+|.+.-.|+++|+.+.++...
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            3557899999999999999999999888644

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.21  E-value=12  Score=35.87  Aligned_cols=38  Identities=26%  Similarity=0.174  Sum_probs=33.1

Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      .+.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45667777888899999999999999999999988864

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.18  E-value=7.7  Score=37.18  Aligned_cols=37  Identities=11%  Similarity=0.148  Sum_probs=31.5

Q ss_pred             ceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccc
Q 020461          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES  184 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  184 (326)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4667777888889999999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-31
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-29
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-27
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-24
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  117 bits (294), Expect = 3e-31
 Identities = 50/312 (16%), Positives = 104/312 (33%), Gaps = 27/312 (8%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GH   +  + +  D  LL S ++D    +W +    ++      +  V  C  +    
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +  G  D    ++N++T       + +    +                           
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-------SCCRFLDDNQIVTSSGD 163

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
                   + G+      G  G +      P  R  +S   DA  ++WD   G   +   
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF- 222

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKL---WDARTLELIKTYVTERPVNAVTMSP 242
             TGH+  I ++    +G+ F TGS D + +L      + L           + +V+ S 
Sbjct: 223 --TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKS 302
               ++ G                 F    +D +  +  G + GH   ++ L    DG +
Sbjct: 281 SGRLLLAGYDD--------------FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 303 FSSGGEDGYVRL 314
            ++G  D ++++
Sbjct: 327 VATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.9 bits (229), Expect = 4e-22
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 15/194 (7%)

Query: 28  CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87
            + D T  +W  + G++  T+ GH G V    ++ D+   ++G+ D +AKLW+V  G   
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219

Query: 88  FTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145
            TF   +S   ++ F   G+  A  + D    L      + +     D            
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN----------I 269

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205
              I    +    R +++  +D    +WD              GH   ++ L    DG  
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMA 326

Query: 206 FLTGSLDKSAKLWD 219
             TGS D   K+W+
Sbjct: 327 VATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (189), Expect = 1e-16
 Identities = 25/80 (31%), Positives = 36/80 (45%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           +           +T + ++K G LL +   D    VW A   +R G   GH+  V C  V
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 61  SRDSMTLITGSADQTAKLWN 80
           + D M + TGS D   K+WN
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 8e-07
 Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 35/215 (16%)

Query: 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA 200
            L+G   +I    WG  +R ++SA +D  + IWD+ T   +            + + A A
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP---LRSSWVMTCAYA 106

Query: 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
             G++   G LD    +++ +T E       E   +   +S             +   T 
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166

Query: 261 TDHRAGKFE--------------------------------AKFFDKILQEEIGGVKGHF 288
                   +                                AK +D           GH 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 289 GPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323
             INA+ F P+G +F++G +D   RL     D   
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 4e-29
 Identities = 60/327 (18%), Positives = 108/327 (33%), Gaps = 42/327 (12%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH  P+T + ++    ++ S ++D T  VW  + G+   T +GH  +V          
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            L + SAD T KLW+ +    + T +      S    + +   +++              
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----------D 122

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-- 183
           +  +    Q G  V    G +  +           I S   D  VR+W   T +   E  
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 184 ---------------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
                          S           +      G   L+GS DK+ K+WD  T   + T
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 229 YVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287
            V  +  V  V         +L    D +              + +D   +  +  +  H
Sbjct: 243 LVGHDNWVRGVLFHS-GGKFILSCADDKT-------------LRVWDYKNKRCMKTLNAH 288

Query: 288 FGPINALAFNPDGKSFSSGGEDGYVRL 314
              + +L F+       +G  D  V++
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (268), Expect = 1e-27
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
                M GH+  ++ +    +GD + S ++D T  +W    G  + T+ GH   V     
Sbjct: 92  ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELN 119
           ++D   + + S DQT ++W V T                + +A     + I+     E  
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211

Query: 120 SAIHVKRIARDPADQG---------GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
            +          +            G  ++ L G    +   ++    + I+S  +D  +
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271

Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
           R+WD +  + +K       H+  +TSL       + +TGS+D++ K+W+
Sbjct: 272 RVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.3 bits (243), Expect = 4e-24
 Identities = 54/280 (19%), Positives = 102/280 (36%), Gaps = 22/280 (7%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106
              GH   V           +++ S D T K+W+ ETG    T    +          D 
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT----------DS 61

Query: 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166
           +  I+ D   +L ++       +    QG E +  + G    ++     P    I+SA  
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
           D  +++W+ +TG  +      TGH++ +  +    DG+   + S D++ ++W   T E  
Sbjct: 122 DKTIKMWEVQTGYCV---KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 227 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF--------EAKFFDKILQ 278
                 R V    +S   +       +   + T    + G F          K +D    
Sbjct: 179 AELREHRHVV-ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237

Query: 279 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 318
             +  + GH   +  + F+  GK   S  +D  +R+  + 
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (238), Expect = 2e-23
 Identities = 60/348 (17%), Positives = 112/348 (32%), Gaps = 45/348 (12%)

Query: 3   PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62
           P ++KGH+  +        G+ + S + D+T  VW A  G+ L T  GH G VW   +  
Sbjct: 9   PKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFN------------------FDSPARSVDFAVG 104
           + +   +                     +                   D+  R  D   G
Sbjct: 68  NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 127

Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPAD--------QGGESVLILKGPQGRINRAVWGP 156
             L V+              +R+     D        +    +  L+G   R+       
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQF 185

Query: 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216
               ++S   D  +R+WD ETG  +      TGH+   + +      +  ++G+ D + K
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGME--LKDNILVSGNADSTVK 240

Query: 217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276
           +WD +T + ++T        +       +   +    D   V   D + G+F        
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 277 LQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDG----YVRLHHFDPD 320
                    G  G +  +  +      + G  +G     + +  FD D
Sbjct: 301 S-------GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT- 231
           W     K  K      GH   + +      G+  ++GS D + K+W A T + ++T V  
Sbjct: 1   WRRGELKSPKVL---KGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56

Query: 232 ERPVNAVTMSP 242
              V +  M  
Sbjct: 57  TGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
            +S  +LKG    +   +       I+S  +D  +++W   TGK L+      GH   + 
Sbjct: 6   LKSPKVLKGHDDHVITCLQ-FCGNRIVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVW 61

Query: 196 SLAKAADGSHF 206
           S     +    
Sbjct: 62  SSQMRDNIIIS 72

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.7 bits (231), Expect = 3e-22
 Identities = 68/348 (19%), Positives = 123/348 (35%), Gaps = 66/348 (18%)

Query: 8   GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG----------------- 50
            H   +  +K++ DG+ L +   + T  V+   +G  +                      
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 51  -HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
             +  +     S D   L TG+ D+  ++W++E    +                     +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169
           ++      +          R    + G+  L L    G    AV     + I +   D  
Sbjct: 179 VSGSGDRTV----------RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228

Query: 170 VRIWDTETGKLLKESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225
           VR+WD+ETG L++  D E    TGHK ++ S+    DG   ++GSLD+S KLW+ +    
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 226 IKTYVT-------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 272
                T             +  V +V  +   D  +L G +D                 F
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGV-------------LF 334

Query: 273 FDKILQEEIGGVKGHFGPINALA------FNPDGKSFSSGGEDGYVRL 314
           +DK     +  ++GH   + ++A        P+   F++G  D   R+
Sbjct: 335 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.5 bits (207), Expect = 6e-19
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 18/233 (7%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GHE+ +  L Y   GD L S + D T  +W    G+   T    +G         D  
Sbjct: 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 218

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNF--------DSPARSVDFAV-GDKLAVITTDPFM 116
            +  GS D+  ++W+ ETG  +   +              SV F   G  +   + D  +
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +L +  +    +       G   +   G +  +        +  I+S  +D  V  WD +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 177 TGKLLKESDKETGHKKTITSLAKA------ADGSHFLTGSLDKSAKLWDARTL 223
           +G  L       GH+ ++ S+A A       + + F TGS D  A++W  + +
Sbjct: 339 SGNPLLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 3e-13
 Identities = 64/317 (20%), Positives = 105/317 (33%), Gaps = 51/317 (16%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVS 61
           H +P+     + D   +    K  T   +   N          L     H   V C   S
Sbjct: 12  HSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 71

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
            D   L TG  ++T +++ V  G+ +   + DS A                         
Sbjct: 72  NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK----------------------- 107

Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181
                      D    +          I    + P  + + +  ED ++RIWD E  K++
Sbjct: 108 -----------DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156

Query: 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241
                      ++        G   ++GS D++ ++WD RT +   T   E  V  V +S
Sbjct: 157 MILQGHEQDIYSLD---YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213

Query: 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
           P     +  G  D +       R    E  F  + L  E     GH   + ++ F  DG+
Sbjct: 214 PGDGKYIAAGSLDRAV------RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267

Query: 302 SFSSGGEDGYVRLHHFD 318
           S  SG  D  V+L +  
Sbjct: 268 SVVSGSLDRSVKLWNLQ 284

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 39/164 (23%)

Query: 160 TIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
             +    +    +++    + +  E  K   H   +  +  + DG +  TG  +K+ +++
Sbjct: 30  DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVY 88

Query: 219 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 278
                 L+                                  +D  A   + +  +    
Sbjct: 89  RVSDGSLVARL-------------------------------SDDSAANKDPENLNTS-- 115

Query: 279 EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 322
                       I ++ F+PDGK  ++G ED  +R+   +    
Sbjct: 116 ----SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 155

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 1e-17
 Identities = 55/308 (17%), Positives = 99/308 (32%), Gaps = 28/308 (9%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
               + +  L+Y  D   + S  +D+T  +W  +  E      GH G+V C     D   
Sbjct: 12  SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERV 67

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126
           +ITGS+D T ++W+V TG  L T      A          +   + D  + +        
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK 186
           I                    R    V    ++ I+SA  D  +++W+T T + ++    
Sbjct: 128 ITLRR-----------VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR---- 172

Query: 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH 246
            T +                ++GS D + +LWD      ++       +          +
Sbjct: 173 -TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---N 228

Query: 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG 306
             +  G     +   D  A          +    +     H G +  L F  D     S 
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL---VEHSGRVFRLQF--DEFQIVSS 283

Query: 307 GEDGYVRL 314
             D  + +
Sbjct: 284 SHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 3e-13
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
           D   + S + D T  VW     E + T  GH   + C         +++GS+D T +LW+
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWD 204

Query: 81  VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140
           +E GA L                  ++     D  +++     +       A  G   + 
Sbjct: 205 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV---WDLVAALDPRAPAGTLCLR 261

Query: 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
            L    GR+ R  +      I+S+  D  + IWD
Sbjct: 262 TLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 2e-11
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 23/199 (11%)

Query: 28  CAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86
           C+KD +  VW  A   +                V  D   +++ S D+T K+WN  T   
Sbjct: 111 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170

Query: 87  LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146
           + T N      +        +   ++D  + L        +      +            
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE------------ 218

Query: 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE------TGHKKTITSLAKA 200
                      N+ I+S   D  +++WD       +             H   +  L   
Sbjct: 219 --ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-- 274

Query: 201 ADGSHFLTGSLDKSAKLWD 219
            D    ++ S D +  +WD
Sbjct: 275 FDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---------LGTYRGHNGAV 55
           L               D   + S A D    VW                L T   H+G V
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270

Query: 56  WCCDVSRDSMTLITGSADQTAKLWN 80
           +   +  D   +++ S D T  +W+
Sbjct: 271 FR--LQFDEFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.5 bits (194), Expect = 3e-17
 Identities = 55/351 (15%), Positives = 102/351 (29%), Gaps = 52/351 (14%)

Query: 12  PLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLIT 69
           P++   +NKD   +  C  +H   ++        ++   + HNG V   D + DS  ++T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 70  GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129
              D+ A +W ++      T       R+                      +I       
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-- 187
           D            K  +  +    W P +  + +   D   RI+     ++ +       
Sbjct: 129 DWWVCKHIK----KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 188 -------------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP 234
                        +     +  +  +A+GS     S D +  L DA     + T  +E  
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE---------------------AKFF 273
                       +V  G      + T D  AGK                        +  
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 274 DKILQEEIGGVKG------HFGPINALAFNPDGKS----FSSGGEDGYVRL 314
           DK    E     G      H   ++ ++    GK+    F + G DG + +
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 33/203 (16%), Positives = 56/203 (27%), Gaps = 21/203 (10%)

Query: 27  SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86
                 TP       GE +       G V     S +   +   S D T  L + +    
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 87  L-FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145
           +    +   P  +V F     L     D                D         L   G 
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDC--------FPVLFTYDS----AAGKLSFGGR 283

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-- 203
                ++    L         D       +        +  ++ HK +++ ++  + G  
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAA----AGAGLDSLHKNSVSQISVLSGGKA 339

Query: 204 --SHFLTGSLDKSAKLWDARTLE 224
             S F T  +D    +WD R+LE
Sbjct: 340 KCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 29/284 (10%), Positives = 75/284 (26%), Gaps = 21/284 (7%)

Query: 46  GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFA 102
             +      + C   ++D   +     +    ++       +        +     VD+A
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 103 V-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161
              +++    TD    + +             +                   W P  +  
Sbjct: 61  PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR----------INRAARCVRWAPNEKKF 110

Query: 162 ISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
                  ++ I   E           +   + T+ SL    +      GS D   +++ A
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

Query: 221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK-----FFDK 275
              E+ +        + +    L+       G       + +     + +        D 
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 276 ILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP 319
             +  +  +     P+ A+ F  +    ++G  D +  L  +D 
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS 273

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 11/135 (8%), Positives = 29/135 (21%), Gaps = 53/135 (39%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV 247
           +   + I+  A   D +       +    ++                             
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIY----------------------------- 34

Query: 248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGG 307
                         +    K+           ++  +K H G +  + + PD     + G
Sbjct: 35  --------------EKSGNKWV----------QVHELKEHNGQVTGVDWAPDSNRIVTCG 70

Query: 308 EDGYVRLHHFDPDYF 322
            D    +       +
Sbjct: 71  TDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 11/72 (15%), Positives = 17/72 (23%), Gaps = 6/72 (8%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS----MTLITGSADQTA 76
                F        +   A  G  L +   H  +V    V            T   D   
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353

Query: 77  KLWNVETGAQLF 88
            +W+V +     
Sbjct: 354 SIWDVRSLESAL 365

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 75.3 bits (183), Expect = 7e-16
 Identities = 27/235 (11%), Positives = 60/235 (25%), Gaps = 19/235 (8%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI 68
            +                         V+  +  +        N   +      DS  L 
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLY 194

Query: 69  TGSADQTAKLWNVETG-------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
             S        +           ++ F       + +    V   +     +  +     
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN---D 251

Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181
           ++ +    +        ++ L+      +  V G        A E  ++  +D +T K+ 
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310

Query: 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YVTERPV 235
                 T  K  +T L  +AD    +    D     +     E  +T    +RP+
Sbjct: 311 ------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 67.6 bits (163), Expect = 3e-13
 Identities = 33/323 (10%), Positives = 75/323 (23%), Gaps = 28/323 (8%)

Query: 3   PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVS 61
            +L       + Y++   D  + F         +   D    +   +  + G V+   V 
Sbjct: 35  YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVD 94

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
           R+    +  +        ++ETG             + DF + D    I     ++    
Sbjct: 95  RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT-DFTISDNSRFIAYGFPLKHGET 153

Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181
                 A    D  G  +              +   ++ +      ++    D       
Sbjct: 154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 182 KESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAK-----LWDARTLELIKTYVTE 232
            E   +         +               G  D +         +    +       E
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273

Query: 233 RPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 291
             +   ++           G  +   +   D +  K                V      +
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----------------VTEVKNNL 317

Query: 292 NALAFNPDGKSFSSGGEDGYVRL 314
             L  + D K+     +DG +  
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYT 340

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 60.6 bits (145), Expect = 5e-11
 Identities = 30/302 (9%), Positives = 66/302 (21%), Gaps = 11/302 (3%)

Query: 20  KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAK 77
            DGDL+   ++     +        L         +       D+               
Sbjct: 13  LDGDLIAFVSRGQA-FIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLG 69

Query: 78  LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
           +++  TG             ++     +    +  +   E+ +                 
Sbjct: 70  IYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128

Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
            +            A   PL            + ++D E  K        T       + 
Sbjct: 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYAP 184

Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDAS 256
           A  AD  +    S        D   L      V++   +  +  SP    +V       +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316
                +    +      D      I  ++      +          +    E G +  + 
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 317 FD 318
             
Sbjct: 305 VK 306

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 7/87 (8%), Positives = 20/87 (22%), Gaps = 4/87 (4%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           +      +   + +         +      +     +           +    +S D  T
Sbjct: 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKT 328

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFD 93
           ++    D     + +E      T   D
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERTVETD 355

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 3e-14
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           +  HE  +  LK+   G    S  KD+    W    G  +      + +V  CD+S D  
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK 319

Query: 66  TLITGSADQTAKLWNV 81
            ++TGS D+ A ++ V
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 2e-13
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
           +    +  +S G+D ++  W T  G  + +    +    ++ S   + D  + +TGS DK
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQ----SKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 214 SAKLWD 219
            A +++
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 40/318 (12%), Positives = 82/318 (25%), Gaps = 33/318 (10%)

Query: 2   RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-----YRGHNGAVW 56
           R I    H   +  +  +     +++        VW   +               +  + 
Sbjct: 43  RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101

Query: 57  CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
            C +  D  TLI G    T  +W++            S A +         + +      
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           + N A+                    +G     +          + + G D  VR WD  
Sbjct: 162 DGNIAVWDLHNQTLVRQF--------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213

Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236
                    ++      I SL     G     G    + ++      +  + ++ E  V 
Sbjct: 214 E----GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269

Query: 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296
           ++  +      V  G          D+    +   +   I Q            + +   
Sbjct: 270 SLKFAYCGKWFVSTG---------KDNLLNAWRTPYGASIFQ------SKESSSVLSCDI 314

Query: 297 NPDGKSFSSGGEDGYVRL 314
           + D K   +G  D    +
Sbjct: 315 SVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 36/317 (11%), Positives = 74/317 (23%), Gaps = 36/317 (11%)

Query: 9   HERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
             +P        DG +       D         +  ++ T   H   V    +S  +  +
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66

Query: 68  ITGSADQTAKLWNVETG------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
            TG      K+W++         +QL   N D+  RS          ++  +        
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181
           +                                   +  I          +   +     
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185

Query: 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241
                 +                   TG LD + + WD R    ++ +     + ++   
Sbjct: 186 ASCIDISNDGT------------KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233

Query: 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
           P                        +        + + +   +  H   + +L F   GK
Sbjct: 234 P---------------TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278

Query: 302 SFSSGGEDGYVRLHHFD 318
            F S G+D  +      
Sbjct: 279 WFVSTGKDNLLNAWRTP 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 2/114 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
            R +        +  L Y   G+ L    +     V   +  ++      H   V     
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKF 273

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTD 113
           +      ++   D     W    GA +F     S   S D +V    +   + D
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 286 GHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
            H   + A+  +   +   +GG  G V++           +
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.9 bits (164), Expect = 2e-13
 Identities = 33/304 (10%), Positives = 67/304 (22%), Gaps = 12/304 (3%)

Query: 23  DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTL-ITGSADQTAKLW 79
           D + + A+     V   +           +          +        T +  ++    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 80  NVETGAQLFTFNFDSPA------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
           ++ TG  L   +  +P            +   K   I   P     +   V+       D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT-ETGKLLKESDKETGHKK 192
               S         +I    W      +   G D  V   +     +       E     
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252
               LA           +        D    +          ++  T    +  V +   
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK--GHFGPINALAFNPDGKSFSSGGEDG 310
              S                 +    E+   +K         ++  + DG +   GG  G
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 311 YVRL 314
            +  
Sbjct: 302 DLAA 305

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (130), Expect = 3e-09
 Identities = 27/226 (11%), Positives = 51/226 (22%), Gaps = 18/226 (7%)

Query: 15  YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74
            +  +     L       T    +                +     +RD   L     D 
Sbjct: 97  AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL 156

Query: 75  TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--NSAIHVKRIARDPA 132
              + + E G  +      S                  +    +        K I     
Sbjct: 157 --HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214

Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTI----------ISAGEDAIVRIWDTETGKLLK 182
                 +L +    G +       ++              + G   ++  +D E    +K
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK 274

Query: 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
                     +  S+  + DGS    G        +DA TLE    
Sbjct: 275 R----VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 3/93 (3%)

Query: 4   ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
             ++  +        N      F     +    +  +    +        + +  +VS D
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTD 290

Query: 64  SMTLITGSADQTAKLWNVETGAQLFTFNFDSPA 96
             T+  G A      ++ ET  +    +    A
Sbjct: 291 GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 20/198 (10%), Positives = 40/198 (20%), Gaps = 14/198 (7%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
              +   G +  +   +     +     + +                      A      
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELN 119
            +D       +        ++ETG                      K         +E  
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
                  I R P      SV                    T+   G    +  +D ET +
Sbjct: 266 DLEKNASIKRVPLPHSYYSV-------------NVSTDGSTVWLGGALGDLAAYDAETLE 312

Query: 180 LLKESDKETGHKKTITSL 197
              + D       ++ S+
Sbjct: 313 KKGQVDLPGNASMSLASV 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (164), Expect = 2e-13
 Identities = 25/325 (7%), Positives = 81/325 (24%), Gaps = 16/325 (4%)

Query: 1   MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVW 56
           M+ + + +  +  ++ +K      LL   + D + TV+  D   +         +   + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 57  CCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
           CC+   ++   I  G+        ++           +     +          +    +
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 175
             L   I  +            +    K                  ++   ++ V+ +  
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN---NSQVQWFRL 177

Query: 176 ETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP 234
              +    + +E+G   +         +   +   S+D    +           Y + + 
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD--QGDDYNSSKR 235

Query: 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA----KFFDKILQEEIGGVKGHFGP 290
                    L    L    ++   +          +      ++   +++I         
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294

Query: 291 INALAFNPDGKSFSSGGEDGYVRLH 315
            + +              D   + +
Sbjct: 295 DSVVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
                 P+  ++++     L++   D   + W     +++  +   N       ++    
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDN 305

Query: 66  TLITGSADQTAKLWNV 81
            L   ++D T K    
Sbjct: 306 ILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 27/228 (11%), Positives = 63/228 (27%), Gaps = 52/228 (22%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA----VWCCDVSRDSMTLITGSAD 73
            + +   L     +     +     E        +G          + ++       S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215

Query: 74  QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
               +   +     +                                       ++  A 
Sbjct: 216 GRVAVEFFDDQGDDYN-------------------------------------SSKRFAF 238

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT 193
           +     L        +N   + P ++ + +AG D I+  W+ +T K +K   K   ++ +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--FNEDS 296

Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWDA--RTLELIKTYV-----TERP 234
           +  +A     +     + D + K   A  +T+EL  + +      E P
Sbjct: 297 VVKIA--CSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 7/42 (16%), Positives = 15/42 (35%)

Query: 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
           +     I+ +   P          DG + ++ FD    N+ +
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL 49

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.7 bits (158), Expect = 1e-12
 Identities = 47/362 (12%), Positives = 104/362 (28%), Gaps = 65/362 (17%)

Query: 6   MKGHERP-LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
           ++GH    +T L++  + + + + A D    V+ + N + L    GH+G VW    +   
Sbjct: 8   LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 65  MTL-------------------------------------------ITGSADQTAKLWNV 81
           + +                                           +TGS D T  +W +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 82  ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141
              + +     +     V     +    +        +            +     ++++
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
               Q +    + G  +R   +  +    R         ++  D E G          A 
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAVTMSPLLDHVVLGGGQDAS 256
            G   L+     SA    +        Y  +       ++A+T   + D++++ G ++  
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-- 303

Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH 316
                + R+GK                       I ++ F       ++  +DG   L  
Sbjct: 304 QFNIYNLRSGKLVHANI-----------LKDADQIWSVNFKGKTL-VAAVEKDGQSFLEI 351

Query: 317 FD 318
            D
Sbjct: 352 LD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (153), Expect = 4e-12
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD 105
           T RGH  +V  C +  +   +ITG+ D+  ++++      L   +  D    ++ +A G 
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165
            L   +TD  + +                             R    V     + I++  
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHN----------STVRCLDIVEYKNIKYIVTGS 115

Query: 166 EDAIVRIWDTETGKLLKESDKETGH 190
            D  + +W       + +  +E  +
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDY 140

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 7/80 (8%), Positives = 23/80 (28%), Gaps = 2/80 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCD 59
                   H   L+ +      D +     ++   ++   +G+ +          +W  +
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVN 331

Query: 60  VSRDSMTLITGSADQTAKLW 79
               ++ +     D  + L 
Sbjct: 332 FKGKTL-VAAVEKDGQSFLE 350

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 1e-11
 Identities = 36/293 (12%), Positives = 84/293 (28%), Gaps = 30/293 (10%)

Query: 41  NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD 100
           + E L T  GHN  +    V+     LI+GS D     W+  +  Q  +    +   S+D
Sbjct: 2   HDEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQDHS----NLIVSLD 53

Query: 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160
            +   + + I+ D  +++N     +  ++                       +       
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113

Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKK------------------TITSLAKAAD 202
           I S   ++           +    ++    +                     + ++ +  
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 203 GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262
            ++   G +     L+D ++ E+  +    R      +S           +    +  T 
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233

Query: 263 HRAGKFEAKFFD-KILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
                     +  K   + I  +  H   +N L +        S G D  ++ 
Sbjct: 234 SLDTN--IFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 6e-09
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 19  NKDGDLLFSCAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77
             + DL+ + + D    ++      + +     H   V        S TL++  AD   K
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK 282

Query: 78  LWNV 81
            WNV
Sbjct: 283 RWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 6e-07
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)

Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
                    + +   D  + I+  +     K       HK  + +L         ++   
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPS-TLVSSGA 277

Query: 212 DKSAKLWD 219
           D   K W+
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 5e-04
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
            +  + +  L   +  +N  +W     T++S+G DA ++ W+
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 3e-11
 Identities = 25/216 (11%), Positives = 51/216 (23%), Gaps = 33/216 (15%)

Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL---LKESDKETGHKKTI 194
           +    K     I            +S   D  +++WD +         +S     HK  +
Sbjct: 6   TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 195 TSLA-------KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-----------RPVN 236
             +         A +     T S       +     +  K  + E               
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 237 AVTMSP----LLDHVVLGGGQDASAVTTTDHRAGKFEAKF-----FDKILQEEIGGVKGH 287
           A+        LL H ++      +      H                  LQ  +      
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 288 FGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323
                ++  +  G   ++G  +G V++         
Sbjct: 184 SQFATSVDISERGL-IATGFNNGTVQISELSTLRPL 218

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 40/347 (11%), Positives = 83/347 (23%), Gaps = 49/347 (14%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDV 60
           K H+  +  +          SC+ D    VW     +      +  ++  H   +   DV
Sbjct: 11  KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 61  SR-------DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD------------- 100
            +       +   + T S       + +    +     F+                    
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 101 ----------FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150
                         D         F       +   +   P  +   +V     P     
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 151 RAVWGPLNRTIISAGEDAIVRIWD---TETGKLLKESDKETGHKKTITSLAKAADGSHFL 207
                     I +   +  V+I +          +       +  +I S+  +  GS   
Sbjct: 189 SVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 267
                 S         E  +   +       + + L +          S   + +     
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 268 FE---AKFFDKILQEEIGGVKGHFGPI----NALAFNPDGKSFSSGG 307
                 +F+D   +E I  +  H   I    + LA +  G S +  G
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 36/290 (12%), Positives = 73/290 (25%), Gaps = 58/290 (20%)

Query: 17  KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM----------- 65
           +   +  L+ + +       +     +           +   D+ + S            
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133

Query: 66  ----TLITGSADQTAKLWNVETGAQ-------------------LFTFNFDSPARSVDFA 102
                L+      T  +W     A                             A SVD +
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193

Query: 103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162
               +A    +        + +  ++        ES   +      I    + P    + 
Sbjct: 194 ERGLIATGFNNGT------VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 163 SAGEDAIV---RIWDTETGKLLKESDKETG----------HKKTITSLAKAADGSHFLTG 209
            A +        +++TE G+ +      T           H   + SL+    G    + 
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 210 SLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVVLGGGQD 254
             D   + WD +T E I T        E   + + +    D +   G  D
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 24/193 (12%), Positives = 51/193 (26%), Gaps = 20/193 (10%)

Query: 45  LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104
           + +    +      D+S   + + TG  + T ++  + T   L+ F       +   ++ 
Sbjct: 177 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 105 DKLAVIT------------TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152
                                      +    +  +        ++ L        +   
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT 208
            +     T+ SAG D  +R WD +T + +        H   I      LA    G     
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAE 352

Query: 209 GSLDKSAKLWDAR 221
             +     L    
Sbjct: 353 PGVFDVKFLKKGW 365

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.4 bits (144), Expect = 5e-11
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90
          G       GHN A+     S D  TL +  A+     W++ TG     F
Sbjct: 2  GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 50

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 4e-09
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
           W P N  + +   D  V +W+           K      ++ S+    + +  ++   D 
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDS 290

Query: 214 SAKLWD 219
           + K W+
Sbjct: 291 NIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (128), Expect = 5e-09
 Identities = 37/286 (12%), Positives = 74/286 (25%), Gaps = 37/286 (12%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS 64
             GH + +T L  + DG  LFS   +     W    G     +   H   +     +   
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTD-------- 113
                   D    +    +G            S    +  +    +AV            
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 114 -------------------PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154
                                  +       ++          S +        I    +
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
                 +++  +   V  +       L  ++  T H   +  ++ + D     TGSLD S
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 215 AKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDAS 256
             +W+          +        VN+V      +  ++  GQD++
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSN 291

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.2 bits (115), Expect = 2e-07
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           +  G    I         +T+ SA  +  +  WD  TG   +       H   IT + 
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIK 62

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (110), Expect = 1e-06
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 26  FSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81
            + + D++  VW  +      +     H  +     +  +  T+++   D   K WNV
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 6e-06
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
            GH   I AL+ + DGK+  S   +G++  
Sbjct: 9   YGHNKAITALSSSADGKTLFSADAEGHINS 38

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 29/250 (11%), Positives = 58/250 (23%), Gaps = 32/250 (12%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVS 61
                R +     + DG  +++                       T  G           
Sbjct: 84  PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM 143

Query: 62  RDSMTLITGSADQTA-------KLWNVETGAQLFTFNFDSPARSVDFAVGDKLA------ 108
              + L+  + D +           +V+TG         +  R    A            
Sbjct: 144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 203

Query: 109 ----------VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158
                         D   +  +A  +          G                 +  P +
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263

Query: 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
              I    +  +  +D +  KL+K ++       T   +A    G     G       ++
Sbjct: 264 PNQIYGVLNR-LAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

Query: 219 DARTLELIKT 228
           +  TLE +K 
Sbjct: 319 NPDTLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 29/325 (8%), Positives = 69/325 (21%), Gaps = 45/325 (13%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTL-ITGSADQTAKL 78
             + +      +   V    +     +             ++ D+ T  +  +       
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 79  WNVETGAQLFTFNF--------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR- 129
            +++T    F  N          S         G ++           +  +        
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 130 -DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET 188
              AD      +       ++            ++  +   + +   +    L   +   
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186

Query: 189 GHKKTITSL-------------------AKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
                   L                       D     T  L       D +T +     
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ- 245

Query: 230 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 289
                         L    L   +D + +    +R  K++ K    I    +        
Sbjct: 246 -------EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH------ 292

Query: 290 PINALAFNPDGKSFSSGGEDGYVRL 314
               +AF+  G     GG    + +
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAV 317

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 20/167 (11%), Positives = 44/167 (26%), Gaps = 10/167 (5%)

Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAK 216
           +  +I       + + D  +  + K        K    +   A D    ++  +      
Sbjct: 8   HEYMIVTNYPNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65

Query: 217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-----K 271
             D  T +             V  S     +   G +  + V  T      +       +
Sbjct: 66  GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125

Query: 272 FFDKILQEEIGGVKGHFGP--INALAFNPDGKSFSSGGEDGYVRLHH 316
            F      E   V+    P  +  +    DG  + +G +   + +  
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 6/99 (6%), Positives = 19/99 (19%), Gaps = 2/99 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
                             +            +    +     + +      +   +C   
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA-NLDHTYYCVAF 299

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV 99
            +    L  G       ++N +T  ++          S 
Sbjct: 300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMST 338

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 9/132 (6%)

Query: 197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQD 254
            A  A   + +  +   +  + D  +  + K+ V   +       M+P      +     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 314
              +   D    K                       + + A +PDGK   +         
Sbjct: 62  GD-IYGIDLDTCKNTFHA------NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN 114

Query: 315 HHFDPDYFNIKI 326
            H+      +++
Sbjct: 115 DHYVVKPPRLEV 126

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.6 bits (137), Expect = 4e-10
 Identities = 34/308 (11%), Positives = 70/308 (22%), Gaps = 18/308 (5%)

Query: 14  TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD 73
             L     GD +  C    +       +      Y  H+        S       +G   
Sbjct: 21  VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 74  QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
              ++W+      +        +  V          I+ D   +  +A+   R       
Sbjct: 80  GNVRIWDTTQTTHILKTTIPVFSGPVKD--------ISWDSESKRIAAVGEGRERFGHVF 131

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT 193
                                             +         G   K       H K 
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ 253
           + S+    DGS F +   D +  L++         +  +   N      +        G 
Sbjct: 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 251

Query: 254 DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALAFNPDGKSFSSGGEDGYV 312
              A  + D        K ++    +    +          L      ++  S   +G++
Sbjct: 252 KI-ASASADKT-----IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

Query: 313 RLHHFDPD 320
                +P+
Sbjct: 306 NF--VNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 32/256 (12%), Positives = 67/256 (26%), Gaps = 15/256 (5%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSR 62
           +   H    T  K +  G    S        +W       +   T    +G V       
Sbjct: 53  IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
           +S  +      +                N    AR+++        V           + 
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS-------VDFKPSRPFRIISG 165

Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
                         +           ++   + P      S G D  + +++   G    
Sbjct: 166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 225

Query: 183 ESDKETGHKKTITSL----AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVN 236
             + ++      +        + DG+   + S DK+ K+W+  TL++ KT    T     
Sbjct: 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 285

Query: 237 AVTMSPLLDHVVLGGG 252
            + +      +V    
Sbjct: 286 QLGIIWTKQALVSISA 301

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205
           +G        P    I      ++       +    +     T H    T    +  G +
Sbjct: 17  RGTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIY---TEHSHQTTVAKTSPSGYY 72

Query: 206 FLTGSLDKSAKLW 218
             +G +  + ++W
Sbjct: 73  CASGDVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 9e-05
 Identities = 8/39 (20%), Positives = 11/39 (28%)

Query: 285 KGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 323
             H         +P G   +SG   G VR+         
Sbjct: 55  TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 32/310 (10%), Positives = 71/310 (22%), Gaps = 25/310 (8%)

Query: 27  SCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCD------VSRDSMTLITGSADQTAKL 78
             A      V   + G  +G   G      V   D       S     +  G      ++
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82

Query: 79  WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR--IARDPADQGG 136
           ++  T             R   F VG    + +  P  +                  +G 
Sbjct: 83  FDPVTLLPTADIELPDAPR---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139

Query: 137 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196
               +L  P                   G  A V      T ++          +  I  
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 199

Query: 197 LAKAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254
            A +      +  +        D  +   + +                      +   + 
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259

Query: 255 ASAVTTTDHRAGKFEAKFFDKILQ-------EEIGGVKGHFGPINALAFNPDGKS--FSS 305
              +     +  ++  K   + +        E +   +     I+++  + D K   ++ 
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYAL 318

Query: 306 GGEDGYVRLH 315
              D  + +H
Sbjct: 319 STGDKTLYIH 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 27/309 (8%), Positives = 67/309 (21%), Gaps = 45/309 (14%)

Query: 19  NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-------VWCCDVSRDSMTLITGS 71
           +     +    +     V+              +          W   ++ D  TL+   
Sbjct: 65  STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 72  ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131
                 +  V+   + F    D P     F        +          A   +      
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184

Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK 191
             +           +  IN   +      ++       +   D  +G   K         
Sbjct: 185 HTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALT 238

Query: 192 KTITSLAKAADGSHFLTGSLD--------------------KSAKLWDARTLELIKTYVT 231
           +   +      G   +                         +   + DA+T E +  +  
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 298

Query: 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 291
              ++++ +S     ++         +   D  +G+            E+  V       
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE------------ELRSVNQLGHGP 346

Query: 292 NALAFNPDG 300
             +     G
Sbjct: 347 QVITTADMG 355

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 2e-08
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 212
           +    ++   + G DA +R+WD  T K +++   +            A      ++ SLD
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 213 KSAKLWD 219
            +   ++
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 8e-08
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS---RDSMTLITGSADQ 74
              D     +   D T  VW     + +  +      +    V      +  +I+ S D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 75  TAKLWNV 81
           T   + +
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 4e-07
 Identities = 32/261 (12%), Positives = 73/261 (27%), Gaps = 20/261 (7%)

Query: 9   HERPLTYLKY--NKDGDLLFSCAKDHTPTVWFADNGER--------LGTYRGHNGAVWCC 58
               +T +K+   K    L S  +     VW     +            ++   G +   
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 59  DVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
               +   L       D      + ++G  L   +  S   +       +     T    
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
                          +D+        K      +          +I+ G D  +  +D +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHH-----KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236

Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--- 233
           +G+ LK  + +    +         D   F T   D + ++WD  T + ++ +  ++   
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296

Query: 234 PVNAVTMSPLLDHVVLGGGQD 254
               V +    +  ++    D
Sbjct: 297 GNQQVGVVATGNGRIISLSLD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 9/139 (6%)

Query: 190 HKKTITSLAKAADGSHFLTGSLDKSA-KLWD--ARTLELIKTYVTER--PVNAVTMSPLL 244
            +   T L+     +         +  +  D     +  +  +       V  V  SP+ 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS 304
               L  G ++  V        K        +  E     +   GPI+ ++++ +G+   
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF----QVLAGPISDISWDFEGRRLC 131

Query: 305 SGGEDGYVRLHHFDPDYFN 323
             GE           D  N
Sbjct: 132 VVGEGRDNFGVFISWDSGN 150

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 3/80 (3%)

Query: 146 QGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLA--KAAD 202
           +       + P    I    G+ A VR  D    K+             +T++       
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 203 GSHFLTGSLDKSAKLWDART 222
             +  +G       +W    
Sbjct: 77  SQYLCSGDESGKVIVWGWTF 96

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 4/98 (4%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV----S 61
                  +  ++++ D                F         Y   +       +     
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV 99
            DS    T  AD T ++W+V T   +  +  D      
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 15/100 (15%)

Query: 231 TER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 289
           T+R     ++  P  + +    G  ++ V   D    K             +    GH  
Sbjct: 15  TQRNFTTHLSYDPTTNAIAYPCG-KSAFVRCLDDGDSK----------VPPVVQFTGHGS 63

Query: 290 -PINALAFNP--DGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
             +  + F+P    +   SG E G V +  +  D  +  +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 103

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 16/236 (6%), Positives = 50/236 (21%), Gaps = 24/236 (10%)

Query: 24  LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-------VSRDSMTLITGSADQTA 76
           LLF                      +  +               S  +    +  A   A
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197

Query: 77  KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136
               V       T   +  +++        L        ++ +       +         
Sbjct: 198 AAGIVGAQC---TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES 254

Query: 137 ESVLILKGPQGRI--------NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET 188
                     G          +  +   +  +                 G+         
Sbjct: 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----I 310

Query: 189 GHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
            +     ++  A DG+       +  +   ++DA + +   +   ++   ++++  
Sbjct: 311 SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN 366

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 20/280 (7%), Positives = 53/280 (18%), Gaps = 25/280 (8%)

Query: 14  TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL------ 67
            +   +          +     V+       +      +   +        +        
Sbjct: 78  DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137

Query: 68  --ITGSADQTAKLWNVETGAQLFTFNF--------DSPARSVDFAVGDKLAVITTDPFME 117
                     A   +V   +                + A     +    LA         
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA--- 194

Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
              A      A+    Q   S        G +  AV   + +  I A    +    D   
Sbjct: 195 -APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253

Query: 178 GKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
                ++ +  G +                       +  ++     A   +        
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313

Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 272
              +A+  +                +   D  + + ++  
Sbjct: 314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 18/309 (5%), Positives = 54/309 (17%), Gaps = 23/309 (7%)

Query: 26  FSCAKDHTPTVWF--ADNGERLGTYRGHNGAVWCCDVSRDSMTLI----------TGSAD 73
                  T   W   A  G  LG   G   ++                        G   
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRT 95

Query: 74  QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
              ++++  T   +         R         +    +   +                 
Sbjct: 96  DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT 193
                  + K              +         A   +        +  +        +
Sbjct: 156 --ASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS 213

Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ 253
             +      G      +         A    +                      ++   +
Sbjct: 214 SQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273

Query: 254 DASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-----GHFGPINALAFNPDGKS--FSSG 306
           +   +        +      +          +      +    +A+    DG S  +++ 
Sbjct: 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333

Query: 307 GEDGYVRLH 315
                + ++
Sbjct: 334 AGTEVLDIY 342

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 8e-06
 Identities = 34/296 (11%), Positives = 75/296 (25%), Gaps = 16/296 (5%)

Query: 18  YNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75
            + D + LFS          +      E          AV    +S     L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGK 84

Query: 76  AKLWNVETGAQLFTFNFD------SPARSVDFAVGDKLAVIT--TDPFMELNSAIHVKRI 127
             + ++                  S   S      DK A+      P   +     ++  
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDK 186
                 +G         P+ R+   +        I++  E   + + D      LK ++ 
Sbjct: 145 KIQS-TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 203

Query: 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-DARTLELIKTYVTERPVNAVTMSPLLD 245
                + +          +F+T +  ++  +  D +  +L+    T              
Sbjct: 204 SAE--RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV 261

Query: 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
           H   G     S +          + +       + +       G    +  +P+ +
Sbjct: 262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ 317

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 22/196 (11%), Positives = 50/196 (25%), Gaps = 16/196 (8%)

Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           V +    +       W   N   ++  +   + + D  T ++      +TG+   +    
Sbjct: 13  VHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTV--LDTGY--AVHISR 68

Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTY---VTERP---VNAVTMSPLLDHVVLGGG 252
            +A G +      D    + D    E        +         +        + + G  
Sbjct: 69  LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY 128

Query: 253 QDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF-SSGGEDG 310
                 +   +    K                       + A+  +     F  +  E G
Sbjct: 129 WPPQYVIMDGETLEPKKIQSTRGMTYD---EQEYHPEPRVAAILASHYRPEFIVNVKETG 185

Query: 311 YVRLHHFDPDYFNIKI 326
            + L  +  D  N+K 
Sbjct: 186 KILLVDYT-DLNNLKT 200

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 7/67 (10%), Positives = 16/67 (23%), Gaps = 2/67 (2%)

Query: 26  FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG 84
                 +T ++      +                V+ D   + +  S   T  + +  T 
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276

Query: 85  AQLFTFN 91
               T  
Sbjct: 277 TITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDA 220
           I+  E   + + D  + K+                   + DG+  ++  +      + D 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

Query: 221 RT 222
            T
Sbjct: 62  AT 63

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 22/176 (12%), Positives = 48/176 (27%), Gaps = 8/176 (4%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
               N   ++  +   + + D ++ K++    K       +     +A G + L    D 
Sbjct: 28  LDLPNLFSVTLRDAGQIALVDGDSKKIV----KVIDTGYAVHISRMSASGRYLLVIGRDA 83

Query: 214 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273
              + D    E  K    +  + A ++              A A           E    
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 274 DKILQEEIGGVKG----HFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 325
            +I+      V          + A+  + +   F    ++    L     D  N+ 
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.09
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.04
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.01
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.87
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.84
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.76
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.58
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.49
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.48
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.25
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.99
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.86
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.74
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.35
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.05
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.93
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.87
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.04
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.02
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.72
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.36
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.96
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.54
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.1
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.44
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.58
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.52
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	86.29
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	85.11
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.69

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.7e-42  Score=286.74  Aligned_cols=284  Identities=19%  Similarity=0.320  Sum_probs=221.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .+|+||.++|++++|+|++++|+||+.||+|+|||..+++.+..+..|..+|.+++|+|+++++++|+.|+++++|+...
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSS
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999765


Q ss_pred             CcE----EEEEecCCCccee-eeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           84 GAQ----LFTFNFDSPARSV-DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        84 ~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      ...    ...+......... ....+........+...      ....      ............+...+....+.+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC------ALWD------IETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             SCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEE------EEEE------TTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             cccccccceecccccccccccccccccccccccccccc------cccc------cccccccccccccceeEeeecccccc
Confidence            432    1122111111111 11122222222111110      0000      01122344445666778888999999


Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe---eccce
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPV  235 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~  235 (326)
                      ..+++++.|+.|++||+++++.+..+   .+|...|++++++|++.+|++|+.|+.|++||++..+.+..+.   ....+
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~---~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEE---eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCce
Confidence            99999999999999999998877654   3689999999999999999999999999999999988877764   23568


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEe
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~  315 (326)
                      .+++++|++..+++++.+.              .+++|+....+.+..+.+|.++|++++|+||+.+|||||.||+|+||
T Consensus       274 ~~~~~s~~~~~l~~g~~dg--------------~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDF--------------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEECSSSCEEEEEETTS--------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEECCCCCEEEEEECCC--------------EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            9999999988777654332              24566666667777888999999999999999999999999999999


Q ss_pred             e
Q 020461          316 H  316 (326)
Q Consensus       316 ~  316 (326)
                      +
T Consensus       340 d  340 (340)
T d1tbga_         340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-41  Score=282.14  Aligned_cols=279  Identities=14%  Similarity=0.176  Sum_probs=220.5

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee-----eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-----~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +|...|.+++|||+|++|++|+ ||.|+|||+.++...     ....+|.+.|.+++|+|++++|++++.|++|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            7999999999999999999987 899999999765432     2345799999999999999999999999999999987


Q ss_pred             CCcEE--EEEec-CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           83 TGAQL--FTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        83 ~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      .....  ..+.. ...+..+.+.++...++.+...     ..+.++.+      ..+.......+|...+.+++|++++.
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~~~------~~~~~~~~~~~~~~~v~~l~~s~~~~  196 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDL------HNQTLVRQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEET------TTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccccccccccccccccc-----cccccccc------cccccccccccccccccccccccccc
Confidence            65433  33332 3445566677766655543321     12222222      23456667788999999999999999


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEE
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  239 (326)
                      .+++++.|+.|++||+++++.+...    .|...|.+++++|++.+|++|+.|+.+++||+++++......+...+.+++
T Consensus       197 ~~~~~~~d~~v~i~d~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~  272 (337)
T d1gxra_         197 KLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK  272 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEE
T ss_pred             ccccccccccccccccccceeeccc----ccccceEEEEEcccccccceeccccccccccccccccccccccccccceEE
Confidence            9999999999999999988776543    477889999999999999999999999999999999887777788899999


Q ss_pred             eCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       240 ~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      |+|+++.+++++. |+             .+++|+....+.+.. .+|.+.|++++|+|++++||||+.||+|+||++
T Consensus       273 ~s~~g~~l~s~s~-Dg-------------~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         273 FAYCGKWFVSTGK-DN-------------LLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSSEEEEEET-TS-------------EEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEEeC-CC-------------eEEEEECCCCCEEEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999987776543 32             234455444444433 347889999999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-40  Score=276.00  Aligned_cols=285  Identities=22%  Similarity=0.308  Sum_probs=233.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..|+||.++|++++|+|++++|+||+.|++|+|||+.+++.+.++++|.+.|.+++|+|++.++++++.++++.+|+...
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      .+....+. +......+.+.++...++....     +..+.++.+      ..+.....+.+|...+.++.++|++.+|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEV------QTGYCVKTFTGHREWVRMVRPNQDGTLIA  159 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEET------TTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccceeeeccCCCceEEeecc-----CcceeEeec------ccceeeeEEccCCCcceeeecccCCCEEE
Confidence            77655443 2344555566665544433221     122333333      23456777889999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC--------------------CCeEEEEeCCCeEEEeecCC
Q 020461          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------------------GSHFLTGSLDKSAKLWDART  222 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~--------------------~~~l~s~s~dg~i~iwd~~~  222 (326)
                      +++.|+.|++|++.+++....+   .+|...+.++.++++                    +..+++++.|+.|++||+++
T Consensus       160 ~~~~d~~v~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         160 SCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             EEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEeCCCeEEEEeeccceeeEEE---ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence            9999999999999988776554   357777888887655                    34689999999999999999


Q ss_pred             cceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCc
Q 020461          223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK  301 (326)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~  301 (326)
                      ++++..+. +...+.+++++|+++.+++++.+.              .+++|+....+.+..+.+|.++|++++|+|+++
T Consensus       237 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~  302 (317)
T d1vyhc1         237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK--------------TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP  302 (317)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSCEEEEETTT--------------EEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred             CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC--------------eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            99998886 456899999999988777654332              245666666666777889999999999999999


Q ss_pred             eEEeecCCCcEEEee
Q 020461          302 SFSSGGEDGYVRLHH  316 (326)
Q Consensus       302 ~lat~s~Dg~i~l~~  316 (326)
                      +||||+.||+|+||+
T Consensus       303 ~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         303 YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEeCCCeEEEeC
Confidence            999999999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-39  Score=276.14  Aligned_cols=285  Identities=23%  Similarity=0.378  Sum_probs=212.5

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc------------------CcccceEEEEEcCCCCeEEE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------------------GHNGAVWCCDVSRDSMTLIT   69 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~------------------~h~~~V~~~~~~~~~~~l~s   69 (326)
                      +|.+.|+|++|||||++|++|+ |++|+||++.+++.+..+.                  +|...|.+++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999986 8999999999988876653                  46677999999999999999


Q ss_pred             EeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461           70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (326)
Q Consensus        70 ~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (326)
                      |+.|++|++||...++...... +...+..+.+.+.....+.+..     ...+.+++..      ..........+...
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-----~~~i~~~d~~------~~~~~~~~~~~~~~  207 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLR------TGQCSLTLSIEDGV  207 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TTEEEEEEECSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-----ceeeeeeecc------cccccccccccccc
Confidence            9999999999999988877665 3456667777765544443322     1123333322      12233333444444


Q ss_pred             eeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccc----cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcc
Q 020461          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       149 i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      +....+.+++.+|++|+.|+.|++||..++.....+.    ...+|...|.+++++|++.+|++|+.|+.|++||+++++
T Consensus       208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence            4444445578899999999999999999877654432    234688999999999999999999999999999998754


Q ss_pred             eEEEE-------------eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcce
Q 020461          225 LIKTY-------------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI  291 (326)
Q Consensus       225 ~~~~~-------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  291 (326)
                      .....             .+...+.+++++|+++.+++++. |+             .+++|+...++.+..+.+|.+.|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg-------------~i~vwd~~~~~~~~~l~~H~~~V  353 (388)
T d1erja_         288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DR-------------GVLFWDKKSGNPLLMLQGHRNSV  353 (388)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TS-------------EEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-CC-------------EEEEEECCCCcEEEEEeCCCCCE
Confidence            33221             23456889999999887776543 32             34567766677777889999999


Q ss_pred             eEEEE------CCCCceEEeecCCCcEEEeecC
Q 020461          292 NALAF------NPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       292 ~~v~~------s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      .++++      +|++.+|||||.||+|+||+++
T Consensus       354 ~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99874      6799999999999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-39  Score=273.90  Aligned_cols=302  Identities=20%  Similarity=0.222  Sum_probs=220.5

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCC--eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      +.++|+|++|+|||++||+|+.|+.|+||+.++++  .+..+++|.++|.+++|+|++++|++|+.|++|++||+++++.
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34789999999999999999999999999998775  6778899999999999999999999999999999999987765


Q ss_pred             EEEEe---cCCCcceeeeecCCeEEEEE-cCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           87 LFTFN---FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        87 ~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      .....   +...+.++.|.+++..++++ .+..      +.++.+....  .........+.|...|.+++|+|++++|+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~------i~i~~~~~~~--~~~~~~~~~~~~~~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRV------ISICYFEQEN--DWWVCKHIKKPIRSTVLSLDWHPNSVLLA  157 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSS------EEEEEEETTT--TEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccceeecccCc------ceeeeeeccc--cccccccccccccccccccccccccccee
Confidence            44443   34567788888876655444 3332      3333332211  00112344567889999999999999999


Q ss_pred             EeeCCCcEEEEECCCCccccc---------------cccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEE
Q 020461          163 SAGEDAIVRIWDTETGKLLKE---------------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (326)
Q Consensus       163 s~~~d~~i~~wd~~~~~~~~~---------------~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (326)
                      +|+.|++|++||.........               .....+|...+.+++|+|++.+|++++.|++|++||+++++.+.
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~  237 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  237 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccccee
Confidence            999999999999865432111               11234678889999999999999999999999999999999988


Q ss_pred             EEee-ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEee-c--------------------c------ccee
Q 020461          228 TYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF-D--------------------K------ILQE  279 (326)
Q Consensus       228 ~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~--------------------~------~~~~  279 (326)
                      .+.. ..++.+++|+|++..++ +|.++...+..++..........- +                    .      ....
T Consensus       238 ~~~~~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (371)
T d1k8kc_         238 TLASETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA  316 (371)
T ss_dssp             EEECSSCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred             eeecccccceeeeecCCCCEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccc
Confidence            8764 45799999999876554 444444444444443332211000 0                    0      0000


Q ss_pred             eeccccccCcceeEEEECCCC----ceEEeecCCCcEEEeecCC
Q 020461          280 EIGGVKGHFGPINALAFNPDG----KSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       280 ~~~~~~~h~~~v~~v~~s~d~----~~lat~s~Dg~i~l~~~~~  319 (326)
                      .......|.+.|+++++.|++    ..|+|+|.||+|+||+++.
T Consensus       317 ~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         317 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            011113489999999997754    3589999999999999853

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-38  Score=263.94  Aligned_cols=282  Identities=16%  Similarity=0.184  Sum_probs=215.2

Q ss_pred             ecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE
Q 020461            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~   87 (326)
                      .+.+...+++++|+|+.|+.++ ++.|.+|++.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++..
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            3444556789999999999885 557999999999999999999999999999999999999999999999999887654


Q ss_pred             EE--Ee-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcE-EEE
Q 020461           88 FT--FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IIS  163 (326)
Q Consensus        88 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s  163 (326)
                      ..  +. +..++.++.|++++..+++......   ....++.+.      .+.....+.+|...|++++|+|++++ |++
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~---~~~~v~~~~------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s  164 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRE---RFGHVFLFD------TGTSNGNLTGQARAMNSVDFKPSRPFRIIS  164 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSS---CSEEEEETT------TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             cccccccccCcccccccccccccccccccccc---ccccccccc------cccccccccccccccccccccccceeeecc
Confidence            32  33 4567888899987776655443111   112233221      22344557889999999999999874 789


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee--------ccce
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------ERPV  235 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~  235 (326)
                      |+.|+.|++||+++++.....   .+|...|+++.++|++.++++++.|+.|++||.++++.+..+..        ...+
T Consensus       165 gs~d~~i~i~d~~~~~~~~~~---~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         165 GSDDNTVAIFEGPPFKFKSTF---GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             EETTSCEEEEETTTBEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             ccccccccccccccccccccc---ccccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999988766544   46889999999999999999999999999999999888777642        3468


Q ss_pred             EEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC---cceeEEEECCCCceEEeecCCCcE
Q 020461          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF---GPINALAFNPDGKSFSSGGEDGYV  312 (326)
Q Consensus       236 ~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~d~~~lat~s~Dg~i  312 (326)
                      .+++|+|+++.+++++. |+             .+++|+....+.+..+..|.   ..+.++.|  ++.+|++++.||.|
T Consensus       242 ~~~~~s~~~~~l~tgs~-Dg-------------~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i  305 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASA-DK-------------TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFI  305 (311)
T ss_dssp             EEEEECTTSSEEEEEET-TS-------------EEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred             cccccCCCCCEEEEEeC-CC-------------eEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEE
Confidence            99999999988776543 43             23445444444444444443   23444554  56789999999999


Q ss_pred             EEeecC
Q 020461          313 RLHHFD  318 (326)
Q Consensus       313 ~l~~~~  318 (326)
                      ++|+.|
T Consensus       306 ~~wd~d  311 (311)
T d1nr0a1         306 NFVNPE  311 (311)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.3e-38  Score=260.28  Aligned_cols=283  Identities=15%  Similarity=0.162  Sum_probs=203.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc-CcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      .++.||..+|++++|+|++++|++|+.|++|++||+++++.+..+. +|...|.+++|+|+++ +++++.|+++++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence            6899999999999999999999999999999999999999988885 6899999999999986 5678889999999986


Q ss_pred             CCcEE----EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCC
Q 020461           83 TGAQL----FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (326)
Q Consensus        83 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (326)
                      .....    ........+..+.+.++..+++......      +.++..        .......  ....+.+++++|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~------i~~~~~--------~~~~~~~--~~~~~~~~~~s~~~  148 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH------IAIYSH--------GKLTEVP--ISYNSSCVALSNDK  148 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSE------EEEEET--------TEEEEEE--CSSCEEEEEECTTS
T ss_pred             Ccccccccccccccccccccccccccccccccccccc------cccccc--------ccccccc--cccccccccccccc
Confidence            53211    1112233445556666555444433322      112211        0111111  22356788999999


Q ss_pred             cEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe----eccc
Q 020461          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERP  234 (326)
Q Consensus       159 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~  234 (326)
                      ++|++|+.|+.|++||+++++....  ....|...|++++++|++.+|++++.|+.|++||+.++.......    +..+
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~  226 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVSEV--KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  226 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEE--EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999987654332  123688899999999999999999999999999998876554432    3467


Q ss_pred             eEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeecccc-ccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-GHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       235 ~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                      +.+++|+|++..+++++.+..  +..+|.+...          ........ .|...|.++.| +++.+|+||+.||+||
T Consensus       227 v~~l~~s~~~~~l~sgs~dg~--i~iwd~~~~~----------~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~  293 (299)
T d1nr0a2         227 VACVSWSPDNVRLATGSLDNS--VIVWNMNKPS----------DHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIK  293 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSC--EEEEETTCTT----------SCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEE
T ss_pred             cccccccccccceEEEcCCCE--EEEEECCCCC----------cceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEE
Confidence            999999999988776654332  2233322211          11111122 34456666655 5678999999999999


Q ss_pred             EeecC
Q 020461          314 LHHFD  318 (326)
Q Consensus       314 l~~~~  318 (326)
                      ||++.
T Consensus       294 iWdl~  298 (299)
T d1nr0a2         294 FWNVP  298 (299)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99973

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=248.39  Aligned_cols=291  Identities=23%  Similarity=0.395  Sum_probs=198.6

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~   82 (326)
                      +.+|+||.+.|.+ +++++|++|||||.|++|+|||+.+++++.++.+|.+.|.+++|+|+  +|++++.|+++++|+..
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence            4789999999865 46778999999999999999999999999999999999999999874  89999999999999998


Q ss_pred             CCcEEEEEecCCCcceeeeecCCeEEEEEcCcccee----------------------------------ceeeeeeeec
Q 020461           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL----------------------------------NSAIHVKRIA  128 (326)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~  128 (326)
                      ..............................+....+                                  +..+.++.. 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~-  164 (342)
T d2ovrb2          86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP-  164 (342)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG-
T ss_pred             cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec-
Confidence            766544433221111111111111111111100000                                  001111111 


Q ss_pred             cCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEE
Q 020461          129 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT  208 (326)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s  208 (326)
                           ........+.+|...+..  +++++..+++|+.|+.|++||++.++.+...   .+|...+.++.+++  .+|++
T Consensus       165 -----~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~~--~~l~s  232 (342)
T d2ovrb2         165 -----ETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMELKD--NILVS  232 (342)
T ss_dssp             -----GGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEE---CCCCSCEEEEEEET--TEEEE
T ss_pred             -----ccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEe---cccccceeEEecCC--CEEEE
Confidence                 112344555666655544  4556789999999999999999988776544   46788888887765  59999


Q ss_pred             EeCCCeEEEeecCCcceEEEEee----ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc
Q 020461          209 GSLDKSAKLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV  284 (326)
Q Consensus       209 ~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  284 (326)
                      |+.|+.|++||+...+....+..    ...+.++.++  ++.++++ +.|+ .+..||.+.+.....+       .....
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~-s~Dg-~i~iwd~~tg~~i~~~-------~~~~~  301 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS-SDDG-TVKLWDLKTGEFIRNL-------VTLES  301 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE-ETTS-EEEEEETTTCCEEEEE-------EECTT
T ss_pred             EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEE-cCCC-EEEEEECCCCCEEEEE-------ecccC
Confidence            99999999999999888777653    2345555555  4455544 4443 2334444333221111       01123


Q ss_pred             cccCcceeEEEECCCCceEEeecCCCc----EEEeecCCC
Q 020461          285 KGHFGPINALAFNPDGKSFSSGGEDGY----VRLHHFDPD  320 (326)
Q Consensus       285 ~~h~~~v~~v~~s~d~~~lat~s~Dg~----i~l~~~~~~  320 (326)
                      .+|.+.|++++|+|++.+||+|+.||+    |++|+|+.+
T Consensus       302 ~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            468889999999999999999999996    999999976

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-35  Score=249.56  Aligned_cols=294  Identities=20%  Similarity=0.303  Sum_probs=206.0

Q ss_pred             CCceeeeecCCce-eEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEE
Q 020461            1 MRPILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (326)
Q Consensus         1 ~~~~~~~~h~~~i-~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~w   79 (326)
                      |+.++|+||.+.| +|++  +++++|++|+.|++|+|||+.+++++.++++|.++|.+++|+|+ .+|++|+.|++|++|
T Consensus         3 p~~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             CEEEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             CCcEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence            3457899999886 5655  56889999999999999999999999999999999999999985 589999999999999


Q ss_pred             EccCCcEEEEEecCCCcce---eeeecCCeEEEE-EcCccceecee----------------------------------
Q 020461           80 NVETGAQLFTFNFDSPARS---VDFAVGDKLAVI-TTDPFMELNSA----------------------------------  121 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~----------------------------------  121 (326)
                      +....+.............   ..+.++...++. +.+..+.+...                                  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            9988776654433222111   111222222221 11111110000                                  


Q ss_pred             ----eeee-----ee---cc-----CCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccc
Q 020461          122 ----IHVK-----RI---AR-----DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES  184 (326)
Q Consensus       122 ----~~~~-----~~---~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  184 (326)
                          +...     .+   ..     ......++.+....++...+.++.++|.+..+++++.|+.|++||.+++..+..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                0000     00   00     0001233445566677788899999999999999999999999999988876654


Q ss_pred             ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeeccc
Q 020461          185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (326)
Q Consensus       185 ~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~  264 (326)
                         .+|...|.++++++  .+|++|+.||+|++||++++................+++++. ++++++ |+         
T Consensus       240 ---~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~-d~---------  303 (355)
T d1nexb2         240 ---QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGS-EN---------  303 (355)
T ss_dssp             ---CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSS-EEEEEE-TT---------
T ss_pred             ---cccccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCC-EEEEEe-CC---------
Confidence               47899999999874  689999999999999999887766554433333344555544 444443 32         


Q ss_pred             CceeeeEeecccceeeec-cccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          265 AGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                          .+++|+...++.+. .+.+|.++|++++|+|+ .++++++.||++.||-+|
T Consensus       304 ----~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         304 ----QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             ----EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred             ----EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence                24566655555553 46789999999999986 578899999998887664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-33  Score=226.70  Aligned_cols=284  Identities=22%  Similarity=0.286  Sum_probs=197.0

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      ..+..|...|+|++  +|+++||||+.||+|+|||+.+++++.++++|.++|.+++|  ++++|++|+.|++|++|++..
T Consensus         9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             eccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            45567888898875  57999999999999999999999999999999999999987  577999999999999999999


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      +......................++........      .++....   ............|...+....+.+  ..+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~  153 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSI------AVWDMAS---PTDITLRRVLVGHRAAVNVVDFDD--KYIVS  153 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCE------EEEECSS---SSCCEEEEEECCCSSCEEEEEEET--TEEEE
T ss_pred             ccccccccccccccccccccccceeecccccce------eEeeccc---cccccccccccccccccccceecc--ccccc
Confidence            887665544333322222233344333333221      2222211   111234445567777777766654  57889


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCC
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSP  242 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~  242 (326)
                      ++.|+.|++||+++++.+..+   .+|...+..+.++  +.++++++.||+|++||+++.+.+..+... ..+.  .+++
T Consensus       154 ~s~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~  226 (293)
T d1p22a2         154 ASGDRTIKVWNTSTCEFVRTL---NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRF  226 (293)
T ss_dssp             EETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEEC
T ss_pred             ccCCCceeeecCCCCcEEEEE---cccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeee--eccc
Confidence            999999999999988876654   3566677777665  568999999999999999999988877543 2333  3445


Q ss_pred             CCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      +...+++++ .|+. +..+|.+....   .........+..+.+|.++|++++|+  +.+|+|||.||+|+||+
T Consensus       227 ~~~~l~sg~-~dg~-i~iwd~~~~~~---~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         227 DNKRIVSGA-YDGK-IKVWDLVAALD---PRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CSSEEEEEE-TTSC-EEEEEHHHHTS---TTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             cceEEEEEc-CCCE-EEEEECCCCcc---ccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            555555543 3332 22232211100   00011122345578899999999994  67899999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-33  Score=231.09  Aligned_cols=237  Identities=16%  Similarity=0.167  Sum_probs=186.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee--eeccCcccceEEEEEcCCCCeEEEEeC--CCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~~~--d~~i~~w   79 (326)
                      .++.+|.+.|++++|+|+|++||+|+.||+|+||++.++...  ..+.+|.++|.+++|+|+++++++++.  +..+++|
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~  131 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  131 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccc
Confidence            467899999999999999999999999999999999887643  567899999999999999999999886  4669999


Q ss_pred             EccCCcEEEEEec-CCCcceeeeecCCeE-EEEE-cCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           80 NVETGAQLFTFNF-DSPARSVDFAVGDKL-AVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        80 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ++++++....+.. ...+.++.|++.... ++.+ .+.      .+.+++.      ..++.....++|..+|.++.++|
T Consensus       132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~------~i~i~d~------~~~~~~~~~~~~~~~i~~v~~~p  199 (311)
T d1nr0a1         132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN------TVAIFEG------PPFKFKSTFGEHTKFVHSVRYNP  199 (311)
T ss_dssp             ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS------CEEEEET------TTBEEEEEECCCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc------ccccccc------cccccccccccccccccccccCc
Confidence            9998877655543 455777888876543 3322 222      2333433      23456777889999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccc----cccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESD----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  232 (326)
                      +++++++++.|+.|++||..+++....+.    ...+|...|++++|+|++++|++|+.||+|++||++++++++++...
T Consensus       200 ~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            99999999999999999998876654432    23578899999999999999999999999999999999999988643


Q ss_pred             c--ceEEEEeCCCCCeeEEecC
Q 020461          233 R--PVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       233 ~--~~~~~~~s~~~~~~~~~~~  252 (326)
                      .  ....+.+.+.++.+++++.
T Consensus       280 ~~~~~~~~~~~~~~~~l~s~s~  301 (311)
T d1nr0a1         280 TRIEDQQLGIIWTKQALVSISA  301 (311)
T ss_dssp             SSGGGCEEEEEECSSCEEEEET
T ss_pred             CCccceEEEEEecCCEEEEEEC
Confidence            2  2333444445556665543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-33  Score=226.67  Aligned_cols=275  Identities=15%  Similarity=0.170  Sum_probs=188.2

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccC
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~   83 (326)
                      .+|+||.++|++++|+|    |+||+.||+|++||..++     ..+|...|.+++++++ ..+++++.|+++++|++..
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~   76 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITK   76 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeeccccccccccc
Confidence            58999999999999998    999999999999998754     3589999999999875 4679999999999999764


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      .      .+......+.+.++...++.......      ..+..      ..+..+..+..+.   ...+++|++..+++
T Consensus        77 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~v  135 (287)
T d1pgua2          77 H------EFGSQPKVASANNDGFTAVLTNDDDL------LILQS------FTGDIIKSVRLNS---PGSAVSLSQNYVAV  135 (287)
T ss_dssp             E------ECSSCEEEEEECSSSEEEEEETTSEE------EEEET------TTCCEEEEEECSS---CEEEEEECSSEEEE
T ss_pred             c------ccccceeeeeeccCCceEEEeecccc------eeeec------cceeeeeeccccc---eeeeeeccCcceee
Confidence            3      22233334444555555444433211      11111      1223333333222   23456777888877


Q ss_pred             eeCCC-cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE--eeccceEEEEe
Q 020461          164 AGEDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--VTERPVNAVTM  240 (326)
Q Consensus       164 ~~~d~-~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~  240 (326)
                      ++.|+ .|++|++...+.....  ...|...+++++|+|++.+|++|+.||.|++||+++++.....  .+...+.+++|
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~  213 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDL--KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISW  213 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEEC--SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEE
T ss_pred             eccccceeeeeeccccceeeee--eeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeee
Confidence            77765 7999998765543332  2357788999999999999999999999999999988766543  24567999999


Q ss_pred             CCCCCeeEEecCCCcceeE-eecccCceeeeEeecccc-eeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeec
Q 020461          241 SPLLDHVVLGGGQDASAVT-TTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~  317 (326)
                      +|.+........++...+. ..|.     .+++|+... .+.+..+.+|.+.|++++|+|++ .|+|++.||+|++|++
T Consensus       214 ~p~~~~~~~~~~~~~~l~sgs~D~-----~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         214 KPAEKGANEEEIEEDLVATGSLDT-----NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCCC------CCSCCEEEEEETTS-----CEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cccccccccccCCCCeeEeecCCC-----eEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9876432222211111111 1111     245555432 34455677899999999999986 5889999999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-32  Score=230.19  Aligned_cols=283  Identities=14%  Similarity=0.145  Sum_probs=195.8

Q ss_pred             ceeEEEEccCCCEEEeecCCC-CeEEEecCCC--CeeeeccCcc-cceEEEEEcC--CCCeEEEEeCCCcEEEEEccCCc
Q 020461           12 PLTYLKYNKDGDLLFSCAKDH-TPTVWFADNG--ERLGTYRGHN-GAVWCCDVSR--DSMTLITGSADQTAKLWNVETGA   85 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~-~v~iw~~~~~--~~~~~~~~h~-~~V~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~   85 (326)
                      .+++++|+|+++.|+.++.+. .++.|+....  ..+..+.+|. ..|++++|+|  ++++|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            457889999999998876554 3566665433  3456777875 5799999998  56799999999999999987544


Q ss_pred             EEEE--------E-ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEec
Q 020461           86 QLFT--------F-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (326)
Q Consensus        86 ~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (326)
                      ....        + .+..++..+.|++++..+++.....   .....++..      ..+..+..+++|...|+++.|+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~---~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~  169 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR---DNFGVFISW------DSGNSLGEVSGHSQRINACHLKQ  169 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS---SCSEEEEET------TTCCEEEECCSCSSCEEEEEECS
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccc---cceEEEEee------cccccceeeeecccccccccccc
Confidence            2111        1 1345667788887665544332210   011112211      23467778899999999999999


Q ss_pred             CCcE-EEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCC-CCeEEEEeCCCeEEEeecCCcceEEEEee-cc
Q 020461          157 LNRT-IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVT-ER  233 (326)
Q Consensus       157 ~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~  233 (326)
                      +++. +++++.|+.|++||.+..+.........+|...|.+++|+|+ +.+|++++.|+.|++||+++++++..+.. ..
T Consensus       170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~  249 (325)
T d1pgua1         170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE  249 (325)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred             cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc
Confidence            9874 678999999999999887766555555678889999999997 67899999999999999999999888753 23


Q ss_pred             ceEEEEeC---CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC--cceeEEEECCC-CceEEeec
Q 020461          234 PVNAVTMS---PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF--GPINALAFNPD-GKSFSSGG  307 (326)
Q Consensus       234 ~~~~~~~s---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~d-~~~lat~s  307 (326)
                      ++..+.++   |++..+++++ .|+             .+++|+...++.+..+..|.  ..+..+++.+. ..+|++||
T Consensus       250 ~v~~~~~s~~~~dg~~l~s~s-~D~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  315 (325)
T d1pgua1         250 PVQGGIFALSWLDSQKFATVG-ADA-------------TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS  315 (325)
T ss_dssp             CCCSCEEEEEESSSSEEEEEE-TTS-------------EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             ccccceeeeeccCCCEEEEEe-CCC-------------eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEE
Confidence            34333333   4566665544 343             23455544444444333333  33445555433 34789999


Q ss_pred             CCCcEEEeec
Q 020461          308 EDGYVRLHHF  317 (326)
Q Consensus       308 ~Dg~i~l~~~  317 (326)
                      .||+|++|++
T Consensus       316 ~dg~i~vwdl  325 (325)
T d1pgua1         316 LDGTLNFYEL  325 (325)
T ss_dssp             TTSCEEEEET
T ss_pred             CCCEEEEEEC
Confidence            9999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-32  Score=227.32  Aligned_cols=279  Identities=16%  Similarity=0.217  Sum_probs=206.6

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEec-CCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE---EE
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL---FT   89 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~   89 (326)
                      ..+..+++|++.........+.-=.+ ...+.+.++ +|...|.+++|+|++++|++|+ ||.|++||+.++...   ..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~   90 (337)
T d1gxra_          13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ   90 (337)
T ss_dssp             CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred             ccccCCCCCCEEeeccCCcceecCCCCCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEE
Confidence            34566777776554443333210000 112334455 7999999999999999999987 899999999765422   12


Q ss_pred             E---ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           90 F---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        90 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      .   .+...+.++.|++++..++++..     +..+.+|++..    ........+.+|...+..+.|+|++.++++++.
T Consensus        91 ~~~~~h~~~I~~v~~s~dg~~l~s~~~-----dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  161 (337)
T d1gxra_          91 LDCLNRDNYIRSCKLLPDGCTLIVGGE-----ASTLSIWDLAA----PTPRIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEES-----SSEEEEEECCC----C--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEeec-----ccccccccccc----ccccccccccccccccccccccccccccccccc
Confidence            1   23456788899987665554432     23344554432    123455667889999999999999999999999


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCe
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH  246 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  246 (326)
                      |+.|++||+++++.....   .+|...+.++++++++..+++|+.|+.+++||+++++.+..+.....+.+++++|+++.
T Consensus       162 d~~i~~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~  238 (337)
T d1gxra_         162 DGNIAVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             TSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccc---cccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccc
Confidence            999999999988765543   46888999999999999999999999999999999999999888889999999999988


Q ss_pred             eEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +++++.+..              +++|+....+.. ....|...|++++|+|++++|++|+.||+|++|+.+...
T Consensus       239 l~~~~~d~~--------------i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         239 LAVGMESSN--------------VEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEEEETTSC--------------EEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cceeccccc--------------cccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence            776544332              233333322222 245788999999999999999999999999999987653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-32  Score=222.67  Aligned_cols=265  Identities=19%  Similarity=0.275  Sum_probs=202.0

Q ss_pred             CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceece
Q 020461           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNS  120 (326)
Q Consensus        42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (326)
                      .....+++||.++|++++|+|++++|+||+.|++|++||+++++.+..+.. ...+.++.+.+....++.......    
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~----   82 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT----   82 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSC----
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccc----
Confidence            444568899999999999999999999999999999999999988877763 556777888876665554432111    


Q ss_pred             eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEc
Q 020461          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA  200 (326)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s  200 (326)
                       ...+..      ..........+|...+.++.++|++..+++++.|+.+++||+++++....+   .+|...+.+++++
T Consensus        83 -~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  152 (317)
T d1vyhc1          83 -IKLWDF------QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---TGHREWVRMVRPN  152 (317)
T ss_dssp             -CCEEET------TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEEC
T ss_pred             -cccccc------cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE---ccCCCcceeeecc
Confidence             011111      122345556788889999999999999999999999999999988776554   4688899999999


Q ss_pred             CCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecc------cCceeeeEee
Q 020461          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH------RAGKFEAKFF  273 (326)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~------~~~~~~~~~~  273 (326)
                      +++.+|++++.|+.|++|+.++++....+. +...+.+++++|.....................      ......+++|
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  232 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  232 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence            999999999999999999999999888775 345788899988766543322111110000000      0001135677


Q ss_pred             cccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          274 DKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       274 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      +....+.+..+.+|..+|.+++|+|++++|++|+.||.|+||+++..
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            77777777788899999999999999999999999999999998754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=2.8e-30  Score=212.93  Aligned_cols=248  Identities=15%  Similarity=0.156  Sum_probs=182.7

Q ss_pred             CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe--cCCCcceeeeecCCeEEEEEcCccceec
Q 020461           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELN  119 (326)
Q Consensus        42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (326)
                      |+..+.+.||.++|++++|+|++++|+||+.|++|++||+++++....+.  +...+.++.+.+++.+++++.+..    
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~----   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH----   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE----
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceee----
Confidence            55678899999999999999999999999999999999999998876653  345677888888877776665432    


Q ss_pred             eeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEE
Q 020461          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (326)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~  199 (326)
                        +.++........   ........+...+..+.++|++..+++++ ++.+++|+.....  . .    .....+.++++
T Consensus        78 --v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~--~-~----~~~~~~~~~~~  144 (299)
T d1nr0a2          78 --LKVVPAGGSGVD---SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT--E-V----PISYNSSCVAL  144 (299)
T ss_dssp             --EEEECSSSSSSC---TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE--E-E----ECSSCEEEEEE
T ss_pred             --EEEeccCCcccc---ccccccccccccccccccccccccccccc-ccccccccccccc--c-c----ccccccccccc
Confidence              233332211111   11112234567788999999998776554 5679999964321  1 1    12345788999


Q ss_pred             cCCCCeEEEEeCCCeEEEeecCCcceEE--EEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccc
Q 020461          200 AADGSHFLTGSLDKSAKLWDARTLELIK--TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL  277 (326)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  277 (326)
                      +|++.+|++|+.|+.|++||+++++...  ...+...+.+++++|++..+++++.+..              +++|+...
T Consensus       145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~--------------i~~~~~~~  210 (299)
T d1nr0a2         145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK--------------VIPYSVAN  210 (299)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC--------------EEEEEGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------cccccccc
Confidence            9999999999999999999998876543  3345678999999999988776654332              23343322


Q ss_pred             e---eeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          278 Q---EEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       278 ~---~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .   .....+.+|..+|++++|+|++++||+|+.||+|+||+++..
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCC
Confidence            1   223446789999999999999999999999999999998754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.4e-29  Score=216.08  Aligned_cols=280  Identities=21%  Similarity=0.247  Sum_probs=198.2

Q ss_pred             EEeecCCCCeEEEecCCCCee----eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec--------
Q 020461           25 LFSCAKDHTPTVWFADNGERL----GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--------   92 (326)
Q Consensus        25 l~s~~~d~~v~iw~~~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------   92 (326)
                      .+....++...+|+.......    ....+|.+.|++++|+|||++|++|+ |++|++||+.+++.+..+..        
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            446778889999987655332    22337999999999999999999986 89999999999887766532        


Q ss_pred             -----------CCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           93 -----------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        93 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                                 ...+.++.|++++..++.+..     +..+.+++.      ..+.......+|...|.++.+++++..+
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~-----dg~v~i~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~  178 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE-----DRLIRIWDI------ENRKIVMILQGHEQDIYSLDYFPSGDKL  178 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEET-----TSCEEEEET------TTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceeccc-----ccccccccc------cccccccccccccccccccccccccccc
Confidence                       123456677776655544332     122333332      2345677788999999999999999999


Q ss_pred             EEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee--------cc
Q 020461          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------ER  233 (326)
Q Consensus       162 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~  233 (326)
                      ++++.++.+++||.++........   .+...+....+.+++.+|++|+.|+.|++||.+++..+..+..        ..
T Consensus       179 ~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         179 VSGSGDRTVRIWDLRTGQCSLTLS---IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD  255 (388)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             cccccceeeeeeeccccccccccc---cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC
Confidence            999999999999998776554332   3444444455556899999999999999999999888777642        34


Q ss_pred             ceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEE
Q 020461          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVR  313 (326)
Q Consensus       234 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~  313 (326)
                      .+.+++++|++..+++++.+..  +..+|.+......................|...|.+++|+|++++|++|+.||+|+
T Consensus       256 ~v~~l~~s~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~  333 (388)
T d1erja_         256 SVYSVVFTRDGQSVVSGSLDRS--VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  333 (388)
T ss_dssp             CEEEEEECTTSSEEEEEETTSE--EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCc--EEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence            6899999999988776654432  33444443322221111112222334567889999999999999999999999999


Q ss_pred             EeecCCCc
Q 020461          314 LHHFDPDY  321 (326)
Q Consensus       314 l~~~~~~~  321 (326)
                      +|+++...
T Consensus       334 vwd~~~~~  341 (388)
T d1erja_         334 FWDKKSGN  341 (388)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            99987543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.4e-30  Score=223.30  Aligned_cols=272  Identities=14%  Similarity=0.169  Sum_probs=176.8

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCee------eeccCcccceEE------EEEcC-CCCeEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL------GTYRGHNGAVWC------CDVSR-DSMTLITG   70 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~------~~~~~h~~~V~~------~~~~~-~~~~l~s~   70 (326)
                      ...++|...|.++++++  ++|+|||.|++|+||+..+.+..      .....|...+..      +..+. +...++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            56789999999999864  69999999999999997665421      112234333222      22222 23467899


Q ss_pred             eCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcccee
Q 020461           71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (326)
Q Consensus        71 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (326)
                      +.|++|++|++...........         .                  ...   ...            ...+...+.
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~---------~------------------~~~---~~~------------~~~~~~~~~  123 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIF---------E------------------KLD---LLD------------SDMKKHSFW  123 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEE---------E------------------EEC---CSC------------TTGGGSCEE
T ss_pred             eCCCcEEEEEccCCCceeeeec---------c------------------ccc---eee------------eccCCCceE
Confidence            9999999999754321100000         0                  000   000            001122333


Q ss_pred             EEEEecC-----CcEEEEeeCCCcEEEEECCCCcccc---------------ccccccCcceeeEEEEEcCCCCeEEEEe
Q 020461          151 RAVWGPL-----NRTIISAGEDAIVRIWDTETGKLLK---------------ESDKETGHKKTITSLAKAADGSHFLTGS  210 (326)
Q Consensus       151 ~~~~~~~-----~~~l~s~~~d~~i~~wd~~~~~~~~---------------~~~~~~~h~~~v~~v~~s~~~~~l~s~s  210 (326)
                      .+.+.++     +.++++++.|+++++||+.......               .......+...+++++++|++ +|++|+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs  202 (393)
T d1sq9a_         124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF  202 (393)
T ss_dssp             EEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred             EEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEe
Confidence            4444443     4678999999999999975322110               111123445668899999997 899999


Q ss_pred             CCCeEEEeecCCcceEEEEe-------eccceEEEEeCCCCCeeEEecCCCc-ceeEeecccCceeeeEeecc-cceeee
Q 020461          211 LDKSAKLWDARTLELIKTYV-------TERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDK-ILQEEI  281 (326)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~-~~~~~~  281 (326)
                      .|++|++||+++++++..+.       +..+|++++|+|++..+++++.+.. ..+..+|...+.....+-.. ......
T Consensus       203 ~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~  282 (393)
T d1sq9a_         203 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  282 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccce
Confidence            99999999999998887764       3457999999999988777654332 23455555544332221111 111223


Q ss_pred             ccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          282 GGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       282 ~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ..+.+|.+.|++++|+||+++|||||.|++||||+++..
T Consensus       283 ~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         283 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             -CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             eeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            345689999999999999999999999999999998764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-30  Score=216.52  Aligned_cols=295  Identities=13%  Similarity=0.091  Sum_probs=193.9

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee---eccCcccceEEEEEcCCC-CeEEEEeCCCcEEEE
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG---TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW   79 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~---~~~~h~~~V~~~~~~~~~-~~l~s~~~d~~i~~w   79 (326)
                      .++++|++.|++++|+|++++||+||.|++|+|||+.++....   ...+|.++|.+++|+|++ .+|++|+.|++|++|
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            4678999999999999999999999999999999987765433   334699999999999864 579999999999999


Q ss_pred             EccCCcEEEEEecCCC-cce-eeeecCC-eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC--ccceeEEEE
Q 020461           80 NVETGAQLFTFNFDSP-ARS-VDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVW  154 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~  154 (326)
                      ++..+........... ... ....++. .++..+.+.      .+.++++....  ...........+  ........+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG------LIEVIDPRNYG--DGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS------EEEEECHHHHT--TBCEEEEESCSSSSSSCCCEEEE
T ss_pred             eccccccccccccccccccccccccccccccccccccc------ccceeeccccc--cceeeecccccccccceeeeeee
Confidence            9988776655443222 211 2222232 333333222      22233221100  000111112222  223345567


Q ss_pred             ecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEE-EcCCCCeEEEEeCCCeEEEeecCCcceEE------
Q 020461          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWDARTLELIK------  227 (326)
Q Consensus       155 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~-~s~~~~~l~s~s~dg~i~iwd~~~~~~~~------  227 (326)
                      .+.+..+++++.|+.|++||+...+..........+.....+.. ++.++..+++++.||.+.+|+........      
T Consensus       157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            78888999999999999999987765443333333444455554 44567889999999999999875432111      


Q ss_pred             EE----------eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEEC
Q 020461          228 TY----------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (326)
Q Consensus       228 ~~----------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  297 (326)
                      .+          .+...+++++|+|+++.+++++. |+             .+++|+....+.+..+..+ ..+..++|+
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~-Dg-------------~v~vWD~~~~~~l~~~~~~-~~~~~~~~s  301 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DG-------------IISCWNLQTRKKIKNFAKF-NEDSVVKIA  301 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TS-------------CEEEEETTTTEEEEECCCC-SSSEEEEEE
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccEEEEECC-CC-------------EEEEEECCCCcEEEEecCC-CCCEEEEEE
Confidence            11          11235789999999988776654 33             2445555555555444332 345567888


Q ss_pred             CCCceEEeecCCCcEEEeecCCCc
Q 020461          298 PDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       298 ~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      |++++||+++.|+++++|....+.
T Consensus       302 ~~~~~l~~a~sdd~~~~~~~~~~~  325 (342)
T d1yfqa_         302 CSDNILCLATSDDTFKTNAAIDQT  325 (342)
T ss_dssp             ECSSEEEEEEECTHHHHCSSSCTT
T ss_pred             eCCCEEEEEEcCCcEEEeeeeCCC
Confidence            899999999999999988776654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.8e-30  Score=217.04  Aligned_cols=246  Identities=14%  Similarity=0.159  Sum_probs=185.7

Q ss_pred             ccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE--EEEe-cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeec
Q 020461           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL--FTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA  128 (326)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (326)
                      ..+|.|++|+|++++|++|+.|+.|++||.++++..  ..+. +..++.++.|++++..++.++.     +..+.+|.+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~-----D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-----DRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-----TSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC-----CCeEEEEeec
Confidence            468999999999999999999999999999877643  3343 4678899999987766554432     2344555543


Q ss_pred             cCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccc-cccccCcceeeEEEEEcCCCCeEE
Q 020461          129 RDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFL  207 (326)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~  207 (326)
                      .    ........+.+|...|.++.|+|+++.|++++.|++|++|++........ .....+|...|.+++|+|++.+|+
T Consensus        82 ~----~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          82 G----RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  157 (371)
T ss_dssp             T----TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             c----cccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccccee
Confidence            2    11234556678889999999999999999999999999999876543322 122346888999999999999999


Q ss_pred             EEeCCCeEEEeecCCcc------------------eEEEE-eeccceEEEEeCCCCCeeEEecCCCcceeEeecccCcee
Q 020461          208 TGSLDKSAKLWDARTLE------------------LIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (326)
Q Consensus       208 s~s~dg~i~iwd~~~~~------------------~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~  268 (326)
                      +|+.|++|++||.....                  .+... .+...+.+++|+|+++.+++++. |+             
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~-------------  223 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DS-------------  223 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TT-------------
T ss_pred             ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-CC-------------
Confidence            99999999999976532                  22222 23456889999999988776543 32             


Q ss_pred             eeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      .+++|+......+..+.+|..+|++++|+||+++||+|+ |+.+++|.++...
T Consensus       224 ~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~  275 (371)
T d1k8kc_         224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAA  275 (371)
T ss_dssp             EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTT
T ss_pred             cceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCC
Confidence            245566555666667788999999999999999998766 8888898877643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=210.66  Aligned_cols=193  Identities=17%  Similarity=0.230  Sum_probs=148.7

Q ss_pred             cCCceeEEEEccC-----CCEEEeecCCCCeEEEecCCCC------------------eeeeccCcccceEEEEEcCCCC
Q 020461            9 HERPLTYLKYNKD-----GDLLFSCAKDHTPTVWFADNGE------------------RLGTYRGHNGAVWCCDVSRDSM   65 (326)
Q Consensus         9 h~~~i~~~~~s~~-----~~~l~s~~~d~~v~iw~~~~~~------------------~~~~~~~h~~~V~~~~~~~~~~   65 (326)
                      +...+..++|.++     ++++++++.|+++++|++....                  .......+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            3345567777765     4689999999999999974321                  111223456678999999987 


Q ss_pred             eEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccC
Q 020461           66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (326)
Q Consensus        66 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (326)
                      +|++|+.|++|++||+++++.+..+..                                              ...+.+|
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~----------------------------------------------~~~l~~h  230 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFES----------------------------------------------QHSMINN  230 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEEC----------------------------------------------CC---CC
T ss_pred             EEEEEeCCCcEEEEeeccccccccccc----------------------------------------------ccccccc
Confidence            889999999999999998876544321                                              1123578


Q ss_pred             ccceeEEEEecCCcEEEEeeCCCc---EEEEECCCCccccccc----------cccCcceeeEEEEEcCCCCeEEEEeCC
Q 020461          146 QGRINRAVWGPLNRTIISAGEDAI---VRIWDTETGKLLKESD----------KETGHKKTITSLAKAADGSHFLTGSLD  212 (326)
Q Consensus       146 ~~~i~~~~~~~~~~~l~s~~~d~~---i~~wd~~~~~~~~~~~----------~~~~h~~~v~~v~~s~~~~~l~s~s~d  212 (326)
                      ..+|++++|+|++++|++|+.|++   |++||+++++.+..+.          ...+|...|++++|+|++++|+||+.|
T Consensus       231 ~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D  310 (393)
T d1sq9a_         231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  310 (393)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             cceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence            899999999999999999999975   9999999887765442          234799999999999999999999999


Q ss_pred             CeEEEeecCCcceEEEEee-ccceE----EEEeCCCCCeeE
Q 020461          213 KSAKLWDARTLELIKTYVT-ERPVN----AVTMSPLLDHVV  248 (326)
Q Consensus       213 g~i~iwd~~~~~~~~~~~~-~~~~~----~~~~s~~~~~~~  248 (326)
                      ++|++||+++++++..+.. ...+.    .++++|++..++
T Consensus       311 ~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             CEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            9999999999999999863 33343    466777766543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5e-28  Score=202.06  Aligned_cols=239  Identities=14%  Similarity=0.181  Sum_probs=170.4

Q ss_pred             eeeecC-CceeEEEEcc--CCCEEEeecCCCCeEEEecCCCCee--------eeccCcccceEEEEEcCCCCeEEEEe--
Q 020461            5 LMKGHE-RPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGERL--------GTYRGHNGAVWCCDVSRDSMTLITGS--   71 (326)
Q Consensus         5 ~~~~h~-~~i~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~~~~--------~~~~~h~~~V~~~~~~~~~~~l~s~~--   71 (326)
                      .+.+|. ..|++++|+|  ++++|++|+.||+|+||+...++..        ..+..|.++|.+++|+++++++++++  
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            456775 6799999998  5689999999999999998765432        23456888999999999999988776  


Q ss_pred             CCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeE-EE-EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccc
Q 020461           72 ADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKL-AV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (326)
Q Consensus        72 ~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (326)
                      .++.+++|+.++++.+..+. +...+.++.+.+.... ++ ++.+..      +.++.....   ..........+|...
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~------v~~~d~~~~---~~~~~~~~~~~~~~~  207 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS------VVFYQGPPF---KFSASDRTHHKQGSF  207 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTE------EEEEETTTB---EEEEEECSSSCTTCC
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccc------ccccccccc---ccceecccccCCCCc
Confidence            47789999999998887765 3556777888876543 33 333332      222322110   000111223467788


Q ss_pred             eeEEEEecC-CcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEc---CCCCeEEEEeCCCeEEEeecCCcc
Q 020461          149 INRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA---ADGSHFLTGSLDKSAKLWDARTLE  224 (326)
Q Consensus       149 i~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~~~l~s~s~dg~i~iwd~~~~~  224 (326)
                      |.+++|+|+ +.+|++++.|+.|++||+++++.+..+.   +|...+..+.++   +++.+|++++.|++|++||+++++
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC---BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cEEeeeccccceeccccccccceeeeeecccccccccc---ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence            999999997 5789999999999999999988776653   566666555554   688999999999999999999999


Q ss_pred             eEEEEeecc---ceEEEEeCCCCCeeEEecCCCc
Q 020461          225 LIKTYVTER---PVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       225 ~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                      +++.+....   ....+++.+.++..+++++.|+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         285 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             EEEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence            998876332   2344444444443445555443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=6.9e-26  Score=189.03  Aligned_cols=255  Identities=21%  Similarity=0.288  Sum_probs=186.1

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceecee
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      +..++++||.++|++++|+|++++|+||+.||+|++||+.+++.+..+.. ..++.++.+.+++..++.+...     ..
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----~~  120 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD-----NI  120 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETT-----CC
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccc-----ce
Confidence            45678999999999999999999999999999999999999998887764 5678888898877665554321     11


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~  201 (326)
                      +..+....  ..........+.+|..........+ +..+.....|.....++..........   ..+...+....+.+
T Consensus       121 i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  194 (340)
T d1tbga_         121 CSIYNLKT--REGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTF---TGHTGDVMSLSLAP  194 (340)
T ss_dssp             EEEEESSS--SCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEE---ECCSSCEEEEEECT
T ss_pred             eecccccc--cccccccceeccccccccccccccc-ccccccccccccccccccccccccccc---cccceeEeeecccc
Confidence            22222111  1122234555667766555544444 566778888999999987765443322   34567788899999


Q ss_pred             CCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee
Q 020461          202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (326)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (326)
                      .+.++++|+.|+.|++||+++++++..+. +...+.+++++|+++.+++++.+..  +..+|.+....          ..
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~--i~~~~~~~~~~----------~~  262 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--CRLFDLRADQE----------LM  262 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTTEE----------EE
T ss_pred             ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe--EEEEeeccccc----------cc
Confidence            99999999999999999999999988876 4568999999999988776654332  22333222211          11


Q ss_pred             eccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ......|...|.+++|+|++.+|++|+.||.|++|++...
T Consensus       263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  302 (340)
T d1tbga_         263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             EECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC
Confidence            1123456678999999999999999999999999998754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=7.1e-26  Score=190.67  Aligned_cols=293  Identities=11%  Similarity=0.059  Sum_probs=191.4

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCC--CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~--~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~   81 (326)
                      ++..+|...|.+++|||||++|++++.+.  .|++|+..+++.. .+..|.+.|.+++|+|++++|++++.++.+++|++
T Consensus        36 ~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          36 VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccc
Confidence            34457999999999999999998877653  7999999887654 57789999999999999999999999999999999


Q ss_pred             cCCcEEEEEec-CCCcceeeeecCCeEEEEEc-Cccc----eeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           82 ETGAQLFTFNF-DSPARSVDFAVGDKLAVITT-DPFM----ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      .+++....+.. ......+.++++...++... ....    .....+.++...       ......+..+...+..+.|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-------~~~~~~~~~~~~~~~~~~~s  187 (360)
T d1k32a3         115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-------GRKIFAATTENSHDYAPAFD  187 (360)
T ss_dssp             TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-------TTEEEECSCSSSBEEEEEEC
T ss_pred             cccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccc-------cCceeeeccccccccccccc
Confidence            99988776654 34566788888776555432 1111    111112222221       12334445566778889999


Q ss_pred             cCCcEEEEeeCCCcEEEEECCCCcccccc----ccccCcceeeEEEEEcCCCCeEEEEeCCCe-----EEEeecCCcceE
Q 020461          156 PLNRTIISAGEDAIVRIWDTETGKLLKES----DKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELI  226 (326)
Q Consensus       156 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~-----i~iwd~~~~~~~  226 (326)
                      |+++.|++++.++.+++||..........    .....|...+..+.+++++..++++..+..     +..++...+...
T Consensus       188 pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T d1k32a3         188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR  267 (360)
T ss_dssp             TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred             CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee
Confidence            99999999999999999997654332110    001123344455567777777766654432     333444444332


Q ss_pred             EEEeeccceEEEEeCCCCCee-EEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEe
Q 020461          227 KTYVTERPVNAVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSS  305 (326)
Q Consensus       227 ~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat  305 (326)
                      .-......+..+.+.+.+... ..+.+.+            ...+++|+...++    ...|.+.|.+++|||||++|++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~~~d~~~~~----~~~~~~~v~~~~~SpDG~~l~~  331 (360)
T d1k32a3         268 MIIPLESSILIYSVPVHGEFAAYYQGAPE------------KGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMV  331 (360)
T ss_dssp             EEEECSSEEEEEECCCCCSHHHHHHCCCC------------CEEEEEEETTTCC----EEEEEEEEEEEEECTTSCEEEE
T ss_pred             EeeecCCCceEEEEEecCCCeeEEEecCC------------CCEEEEEECCCCe----EEEecCCcCEEEECCCCCEEEE
Confidence            222222333344443332211 1111111            1234555544432    2345567999999999999999


Q ss_pred             ecCCCcEEEeecCCC
Q 020461          306 GGEDGYVRLHHFDPD  320 (326)
Q Consensus       306 ~s~Dg~i~l~~~~~~  320 (326)
                      ++.||.|++|+++..
T Consensus       332 ~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         332 RKDDGKIYTFPLEKP  346 (360)
T ss_dssp             EETTSCEEEEESSCT
T ss_pred             EECCCeEEEEECCCC
Confidence            999999999998653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.2e-25  Score=184.38  Aligned_cols=266  Identities=13%  Similarity=0.101  Sum_probs=167.3

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEE----EEEecCCCcceeeeecCC-eEEEEE-cCccc
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL----FTFNFDSPARSVDFAVGD-KLAVIT-TDPFM  116 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~  116 (326)
                      +.+...++|...|++|+|+|++++|++|+.|++|++||++++...    ..+.+..++.++.|.+.+ .+++.+ .+.  
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~--   79 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG--   79 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS--
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc--
Confidence            356667899999999999999999999999999999999765432    233567788899998754 344333 222  


Q ss_pred             eeceeeeeeeeccCCCCCCCceEEEeccC-ccceeEEEEecCCcEEEEeeCCCcEEEEECCCCcccccccc-c--cCcce
Q 020461          117 ELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-E--TGHKK  192 (326)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~--~~h~~  192 (326)
                          .+.++....      .........+ ........+.+....+++++.|+++++||++++........ .  .....
T Consensus        80 ----~v~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          80 ----EILKVDLIG------SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             ----CEEEECSSS------SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             ----ceeeeeccc------ccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccc
Confidence                233333221      1222222222 33334555667788999999999999999875443322111 1  11223


Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe----eccceEEEEeCCCCCeeEEecCCCc-ceeEeecccCce
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGK  267 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~d~~~~~  267 (326)
                      ......+.+++..+++++.|+.|++||+++.+......    ......+..+.+.....++.++.++ ..+...+.....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            34556677888899999999999999998766544332    1233455555554444444333333 333333322111


Q ss_pred             eee-EeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          268 FEA-KFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       268 ~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      ... ...............+|...|++++|+|++.+||||+.||+|+||+++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence            100 00000011112234567888999999999999999999999999998864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-24  Score=181.29  Aligned_cols=244  Identities=18%  Similarity=0.283  Sum_probs=172.5

Q ss_pred             eeeccCcccce-EEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe-cCCCcceeeeecCCeEEEEEcCccceeceee
Q 020461           45 LGTYRGHNGAV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (326)
Q Consensus        45 ~~~~~~h~~~V-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (326)
                      ..+++||...| .|+++  ++++|+||+.|++|++||+.+++.+..+. +..++.++.+.+++.++.++.+..      +
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~------i   76 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT------V   76 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCC------E
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccc------c
Confidence            34689998886 56655  57899999999999999999999988886 467788899988777666555443      3


Q ss_pred             eeeeeccCCCCCCCceEEEec--cCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccc-------------
Q 020461          123 HVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-------------  187 (326)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------  187 (326)
                      .++....      ........  .+........+++++..+++++.|+.|++||+++..........             
T Consensus        77 ~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d1nexb2          77 RVWDIKK------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  150 (355)
T ss_dssp             EEEETTT------TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTC
T ss_pred             ccccccc------cccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccc
Confidence            3333221      11222222  22333455667888899999999999999999876543221100             


Q ss_pred             -------cCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe-eccceEEEEeCCCCCeeEEecCCCcceeE
Q 020461          188 -------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVT  259 (326)
Q Consensus       188 -------~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  259 (326)
                             ..|...+  ....+++..++++..|+.|++||+++++.+.... ......++.++|.+..+++++.+.     
T Consensus       151 ~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----  223 (355)
T d1nexb2         151 PYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT-----  223 (355)
T ss_dssp             TTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS-----
T ss_pred             cceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccc-----
Confidence                   0122222  2345678899999999999999999998887765 345678889999988877665432     


Q ss_pred             eecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCCC
Q 020461          260 TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~~  320 (326)
                               .+++|+...+..+..+.+|.+.|.+++|+  +++|++|+.||+|++|++...
T Consensus       224 ---------~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         224 ---------TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             ---------CEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTC
T ss_pred             ---------eEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccc
Confidence                     23455555556666778999999999997  579999999999999998754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=9.8e-22  Score=160.96  Aligned_cols=268  Identities=13%  Similarity=0.110  Sum_probs=189.8

Q ss_pred             EEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeec
Q 020461           25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV  103 (326)
Q Consensus        25 l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  103 (326)
                      +++.+.|++|.+||+++++.+.+++.. ..+..++|+|||++| ++++.+++|++||+.+++.+..+........+.+.+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc
Confidence            456788999999999999999888754 346789999999987 466688999999999999888877665566677776


Q ss_pred             CCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCcEEEEECCCCcccc
Q 020461          104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLK  182 (326)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~  182 (326)
                      +....++.....    ..+.++..      ..+.....+.. ......+.++|++..++ ++..++.+.+|+..+++...
T Consensus        84 ~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2          84 DGKQVYVTNMAS----STLSVIDT------TSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (301)
T ss_dssp             TSSEEEEEETTT----TEEEEEET------TTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccccccccc----ceeeeccc------ccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceee
Confidence            655443332211    11112211      12233444443 34567899999998764 66678899999998887665


Q ss_pred             ccccccCcceeeEEEEEcCCCCeEEEEeCC-CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCC-cceeEe
Q 020461          183 ESDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTT  260 (326)
Q Consensus       183 ~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~  260 (326)
                      .+.    +...+..+.+++++..+++++.+ +.+.+|+....+..........+..++++++++.++++.... ...   
T Consensus       153 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~---  225 (301)
T d1l0qa2         153 TVS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT---  225 (301)
T ss_dssp             EEE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE---
T ss_pred             ecc----cCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeee---
Confidence            543    33457788999999988888765 667788888887777777777788899999999887654322 122   


Q ss_pred             ecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceE-EeecCCCcEEEeecCCCc
Q 020461          261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF-SSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l-at~s~Dg~i~l~~~~~~~  321 (326)
                               +++|+....+.+..+.. ...+..++|+|||++| ++++.|++|++|++...-
T Consensus       226 ---------v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         226 ---------VSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             ---------EEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ---------eeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence                     33444444333333332 3467999999999976 788899999999987654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-22  Score=165.05  Aligned_cols=229  Identities=26%  Similarity=0.400  Sum_probs=155.6

Q ss_pred             eeeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEE-----------------------
Q 020461            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV-----------------------   60 (326)
Q Consensus         4 ~~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~-----------------------   60 (326)
                      ..+.+|...|.+++|+|+  +|++|+.|+++++|+............+...+.....                       
T Consensus        51 ~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  128 (342)
T d2ovrb2          51 RTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ  128 (342)
T ss_dssp             EECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC
T ss_pred             EEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccc
Confidence            467899999999999875  9999999999999998766554443333333322221                       


Q ss_pred             ---------------cCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeec-CCeEEEEEcCccceeceeeee
Q 020461           61 ---------------SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHV  124 (326)
Q Consensus        61 ---------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  124 (326)
                                     .+....+++++.|+.|++||....+.+..+..... ....... +..++..+.+.      .+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~dg------~i~~  201 (342)
T d2ovrb2         129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQFDGIHVVSGSLDT------SIRV  201 (342)
T ss_dssp             EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEECSSEEEEEETTS------CEEE
T ss_pred             ceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc-ccccccCCCCEEEEEeCCC------eEEE
Confidence                           12334556666666666666666555544432211 1112222 22233222222      2334


Q ss_pred             eeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC
Q 020461          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS  204 (326)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  204 (326)
                      +++      ..+..+....+|...+.++.+++  ++|++++.|+.|++||+...+....+.....|...+.++.++  +.
T Consensus       202 ~d~------~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  271 (342)
T d2ovrb2         202 WDV------ETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN  271 (342)
T ss_dssp             EET------TTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred             eec------ccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CC
Confidence            433      23456777888998888877765  699999999999999998887766665555677777777765  46


Q ss_pred             eEEEEeCCCeEEEeecCCcceEEEEee------ccceEEEEeCCCCCeeEEec
Q 020461          205 HFLTGSLDKSAKLWDARTLELIKTYVT------ERPVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       205 ~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~s~~~~~~~~~~  251 (326)
                      ++++|+.||+|++||++++++++++..      ...+.+++++|++..+++++
T Consensus       272 ~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~  324 (342)
T d2ovrb2         272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS  324 (342)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEe
Confidence            899999999999999999999988753      34699999999876555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=6.1e-23  Score=172.49  Aligned_cols=285  Identities=12%  Similarity=0.018  Sum_probs=184.2

Q ss_pred             eEEEEcc-CCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCC--cEEEEEccCCcEEEEE
Q 020461           14 TYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTF   90 (326)
Q Consensus        14 ~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~   90 (326)
                      ..-.||| ||+++|+++. +.|++|+++++..+..  +|.+.|.+++|+|||++|++++.+.  .|++||.++++.....
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee
Confidence            3467999 9999998865 7999999988877653  6899999999999999998877653  7999999998877655


Q ss_pred             ecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe------
Q 020461           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA------  164 (326)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~------  164 (326)
                      .+...+..+.|+++++.++......     .+..+..      ..+.....+..|...+.+++|+|++++|+.+      
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~  151 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRF-----EIMTVDL------ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG  151 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTS-----EEEEEET------TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             CCCceEEeeeecccccccceecccc-----ccccccc------cccceeeeeecccccccchhhccceeeeeeecccccc
Confidence            6667778888998776665543321     2222222      2345666778888899999999999999854      


Q ss_pred             ----eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEEEEe
Q 020461          165 ----GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (326)
Q Consensus       165 ----~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (326)
                          ..++.+++||+.+++.....    .|...+..+.++|+|++|++++.|+.+++||........  .....+..+.+
T Consensus       152 ~~~~~~~~~~~v~d~~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~--~~~~~~~~~~~  225 (360)
T d1k32a3         152 ETDGYVMQAIHVYDMEGRKIFAAT----TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--EVVSKPFVIPL  225 (360)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECS----CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC--CSCBEEEEEES
T ss_pred             ceeeccccceeeeccccCceeeec----ccccccccccccCCCCEEEEEeCCCceEcccccccceee--ccccceEEEec
Confidence                34556999999887654322    355678889999999999999999999999987654321  11122333343


Q ss_pred             CCCCCeeEEecCCCccee--EeecccCceeeeEeecccceeeeccccccCcceeEEEECC---CCceEEeecCCCcEEEe
Q 020461          241 SPLLDHVVLGGGQDASAV--TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP---DGKSFSSGGEDGYVRLH  315 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~---d~~~lat~s~Dg~i~l~  315 (326)
                      ++.....+.-. .+....  ...+.......+..+....+ ....+..+.+.+..+.+.+   ++.++++++.++.|++|
T Consensus       226 ~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  303 (360)
T d1k32a3         226 IPGSPNPTKLV-PRSMTSEAGEYDLNDMYKRSSPINVDPG-DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY  303 (360)
T ss_dssp             STTCCCGGGCC-CGGGSCCCCCCCCTTGGGGCEECSCCCB-CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred             ccCccccceEC-CCcCcccccceeecccccceeecccCcC-ceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEE
Confidence            33222111000 000000  00000000001111111111 1112233444455555544   45578999999999999


Q ss_pred             ecCCC
Q 020461          316 HFDPD  320 (326)
Q Consensus       316 ~~~~~  320 (326)
                      ++...
T Consensus       304 d~~~~  308 (360)
T d1k32a3         304 DVKTR  308 (360)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            98654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=9.1e-23  Score=166.52  Aligned_cols=231  Identities=18%  Similarity=0.185  Sum_probs=159.1

Q ss_pred             CCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceecee
Q 020461           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        42 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      .+.++++++|.++|.+++|+|    |+||+.||+|++||+.++..    .+...+.++.+.++..++.++.+..      
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~----~h~~~V~~~~~~~~~~~~s~s~D~~------   68 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNSKAQEYSSISWDDT------   68 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC----CCCSCEEEEECCSTTCCEEEETTTE------
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC----CCCCCEEEEEecCCCeEEEEeeccc------
Confidence            357889999999999999987    89999999999999876532    3344556666666655554443332      


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~  201 (326)
                      +.++....             ......+..+.+++++..++++ .++.+.+|+..+++....+.    +...  ..++++
T Consensus        69 v~~w~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~  128 (287)
T d1pgua2          69 LKVNGITK-------------HEFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR----LNSP--GSAVSL  128 (287)
T ss_dssp             EEETTEEE-------------EECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE----CSSC--EEEEEE
T ss_pred             cccccccc-------------cccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecc----ccce--eeeeec
Confidence            22332211             0122345667788877666655 45568899998887765543    1222  345567


Q ss_pred             CCCeEEEEeCCC-eEEEeecCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccce
Q 020461          202 DGSHFLTGSLDK-SAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ  278 (326)
Q Consensus       202 ~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  278 (326)
                      ++..+++++.|+ .+++|++...+......  ....+.+++|+|++..++++..+..              +++|+....
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~--------------i~i~d~~~~  194 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK--------------ILLYDLQSR  194 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC--------------EEEEETTTT
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc--------------ccceeeccc
Confidence            778888888775 79999998766655543  3457899999999988776644332              334443333


Q ss_pred             ee-eccccccCcceeEEEECCC----------CceEEeecCCCcEEEeecCCC
Q 020461          279 EE-IGGVKGHFGPINALAFNPD----------GKSFSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       279 ~~-~~~~~~h~~~v~~v~~s~d----------~~~lat~s~Dg~i~l~~~~~~  320 (326)
                      .. ...+.+|.++|++++|+|+          +.+||||+.|++|+||+++..
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence            22 2345789999999999875          468999999999999998653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=3.5e-22  Score=172.52  Aligned_cols=254  Identities=9%  Similarity=0.024  Sum_probs=170.2

Q ss_pred             EEccCCC--EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCC
Q 020461           17 KYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (326)
Q Consensus        17 ~~s~~~~--~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~   94 (326)
                      .++.|.+  ++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||+++++++.|++|++||+.+++.......  
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i--  101 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--  101 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE--
Confidence            3455533  56889999999999999999999998875 589999999999999999999999999998875432210  


Q ss_pred             CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCcEEEE
Q 020461           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW  173 (326)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~w  173 (326)
                                                                   ....+|.+.+.++.|+|+|++++ ++..++++++|
T Consensus       102 ---------------------------------------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~  136 (426)
T d1hzua2         102 ---------------------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM  136 (426)
T ss_dssp             ---------------------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred             ---------------------------------------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEE
Confidence                                                         01123334455667889999765 55689999999


Q ss_pred             ECCCCcccccccc--------ccCcceeeEEEEEcCCCCeEEEEeC-CCeEEEeecCCcce--EEEEeeccceEEEEeCC
Q 020461          174 DTETGKLLKESDK--------ETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLEL--IKTYVTERPVNAVTMSP  242 (326)
Q Consensus       174 d~~~~~~~~~~~~--------~~~h~~~v~~v~~s~~~~~l~s~s~-dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~s~  242 (326)
                      |..+++.......        ...+......+..++++..++.... .+.+.+++......  +........+..+.++|
T Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred             cCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence            9998876543321        1112333455666777776665544 35566666555442  23344556788999999


Q ss_pred             CCCeeEEecCCCcceeEeecccCcee-----------------------------------eeEeeccc-------ceee
Q 020461          243 LLDHVVLGGGQDASAVTTTDHRAGKF-----------------------------------EAKFFDKI-------LQEE  280 (326)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~d~~~~~~-----------------------------------~~~~~~~~-------~~~~  280 (326)
                      ++..++++...+... ...+...+..                                   .+..+...       ..+.
T Consensus       217 ~g~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~  295 (426)
T d1hzua2         217 SHRYFMTAANNSNKV-AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  295 (426)
T ss_dssp             TSCEEEEEETTCSEE-EEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred             CCcEEEeeeecccce-eeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence            999887765433221 1111111111                                   00111110       1123


Q ss_pred             eccccccCcceeEEEECCCCceEE-------eecCCCcEEEeecCC
Q 020461          281 IGGVKGHFGPINALAFNPDGKSFS-------SGGEDGYVRLHHFDP  319 (326)
Q Consensus       281 ~~~~~~h~~~v~~v~~s~d~~~la-------t~s~Dg~i~l~~~~~  319 (326)
                      ...+.+|...+..++|+||+++|+       +++.|++|+||++..
T Consensus       296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence            345678999999999999999999       567799999999764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.9e-21  Score=167.86  Aligned_cols=307  Identities=9%  Similarity=-0.008  Sum_probs=175.4

Q ss_pred             eeeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeee-----eccCcccceEEEEEcCCCCeEEE-EeCCCcEEE
Q 020461            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-----TYRGHNGAVWCCDVSRDSMTLIT-GSADQTAKL   78 (326)
Q Consensus         5 ~~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~l~s-~~~d~~i~~   78 (326)
                      .+..|. .+..++|||||++|++++.|+++++||+.+++...     ...+|.+.+.+++|+|||+++++ +..++++++
T Consensus        57 ~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i  135 (426)
T d1hzua2          57 VIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  135 (426)
T ss_dssp             EEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             EEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEE
Confidence            445554 58999999999999999999999999999887432     33467778889999999998754 558999999


Q ss_pred             EEccCCcEEEEEecC-CCcceeeeecCCeEE--EEEcCcccee---ceeeeeeeeccCCCCCCCceEEEeccCccceeEE
Q 020461           79 WNVETGAQLFTFNFD-SPARSVDFAVGDKLA--VITTDPFMEL---NSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (326)
Q Consensus        79 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (326)
                      ||..+++........ ..+....+.++....  +...+.....   .....+......   ...........+...+..+
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~  212 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK---DIDNLTVTSIGAAPFLADG  212 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS---SSSSCEEEEEECCSSEEEE
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec---cccceeeEEeccCCccEee
Confidence            999998877665432 112222222222111  1111110000   000000000000   0011122233455678889


Q ss_pred             EEecCCcEEEEe-eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-e--EEEEeCCCeEEEeecCC------
Q 020461          153 VWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-H--FLTGSLDKSAKLWDART------  222 (326)
Q Consensus       153 ~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~--l~s~s~dg~i~iwd~~~------  222 (326)
                      .++|++++++.+ ..+..+.+++..+++........ .+........+...+. .  .++.+.|+.+..|+...      
T Consensus       213 ~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~  291 (426)
T d1hzua2         213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG-KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY  291 (426)
T ss_dssp             EECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS-SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT
T ss_pred             eECCCCcEEEeeeecccceeeeecccccEEEEeccC-CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccc
Confidence            999999977665 45667999999988776543221 1111112222222211 1  22333466666666443      


Q ss_pred             -cceEEEEee-ccceEEEEeCCCCCeeEEecCC-----CcceeEeecccCceeeeEeecccceeeeccccccCcceeEEE
Q 020461          223 -LELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQ-----DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (326)
Q Consensus       223 -~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  295 (326)
                       .+....+.. ...+..++++|++..+++....     ....+..+|...+.....+...   .....+..|...|..++
T Consensus       292 ~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~---~~~~~~~~~~~rv~~~~  368 (426)
T d1hzua2         292 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI---AEWADLGEGAKRVVQPE  368 (426)
T ss_dssp             BTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH---HHHHCCCSSCCCEEEEE
T ss_pred             cceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc---chhcccCCCCccEEEEE
Confidence             355566553 4568899999999998864211     1112333333222211111000   00112345667899999


Q ss_pred             ECCCCceE-Ee----ecCCCcEEEeecCC
Q 020461          296 FNPDGKSF-SS----GGEDGYVRLHHFDP  319 (326)
Q Consensus       296 ~s~d~~~l-at----~s~Dg~i~l~~~~~  319 (326)
                      |||||+++ ++    ++.||.|+||+...
T Consensus       369 fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         369 YNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             ECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             ECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            99999976 33    35689999997654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=8.8e-22  Score=170.01  Aligned_cols=295  Identities=12%  Similarity=-0.002  Sum_probs=167.7

Q ss_pred             eeecCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCe--e---eeccCcccceEEEEEcCCCCeE-EEEeCCCcEEEE
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--L---GTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLW   79 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--~---~~~~~h~~~V~~~~~~~~~~~l-~s~~~d~~i~~w   79 (326)
                      +..| ..+..++|||||++|++++.|+++++||+.+++.  +   ....+|.+.+.+.+|+|||++| ++++.+++|++|
T Consensus        58 ~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~  136 (432)
T d1qksa2          58 LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  136 (432)
T ss_dssp             EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence            4445 3589999999999999999999999999988763  2   3345677888888999999976 678889999999


Q ss_pred             EccCCcEEEEEecCC-C-----------cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEec-cCc
Q 020461           80 NVETGAQLFTFNFDS-P-----------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQ  146 (326)
Q Consensus        80 d~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  146 (326)
                      |..+++.+..+.... .           ...+.++++....++....    ...+......      ..+...... .+.
T Consensus       137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~----~~~i~~~d~~------~~~~~~~~~i~~g  206 (432)
T d1qksa2         137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----TGKILLVDYT------DLNNLKTTEISAE  206 (432)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEETT------CSSEEEEEEEECC
T ss_pred             eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc----CCeEEEEEcc------CCCcceEEEEccc
Confidence            999998877664321 1           1122233322222211110    0111111110      111111111 234


Q ss_pred             cceeEEEEecCCcEEEEeeC-CCcEEEEECCCCccccccccc--cCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCC
Q 020461          147 GRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART  222 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~  222 (326)
                      ..+..+.++|+++++++++. ++.+.++|..+++....+...  ..|............+...++.. .|+.+.+|+..+
T Consensus       207 ~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccc
Confidence            46788999999997766654 668899999877665433211  12233333444444444444443 377788887654


Q ss_pred             cceEEEEeeccceEEEEeCCCCCeeEEecCCCcc----------------eeEeecccCc-----eeeeEeecccceeee
Q 020461          223 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDAS----------------AVTTTDHRAG-----KFEAKFFDKILQEEI  281 (326)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~----------------~~~~~d~~~~-----~~~~~~~~~~~~~~~  281 (326)
                      ....   .....+....+++.+..++++...+..                .+..+|.+..     ...+++|+....   
T Consensus       287 ~~~~---~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~---  360 (432)
T d1qksa2         287 EGHP---DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW---  360 (432)
T ss_dssp             TTCT---TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH---
T ss_pred             cccc---ccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccc---
Confidence            3211   011122333333333333222222111                1222333211     012355554322   


Q ss_pred             ccccccCcceeEEEECCCCceEEeec-----CCCcEEEeec
Q 020461          282 GGVKGHFGPINALAFNPDGKSFSSGG-----EDGYVRLHHF  317 (326)
Q Consensus       282 ~~~~~h~~~v~~v~~s~d~~~lat~s-----~Dg~i~l~~~  317 (326)
                      ..+.+|...|..++|||||++++.+.     .+|.|+||+-
T Consensus       361 ~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         361 AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence            22345778899999999999875443     4688998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2.2e-21  Score=161.30  Aligned_cols=273  Identities=13%  Similarity=0.061  Sum_probs=174.3

Q ss_pred             CEEEeecCCCCeEEEecCCCCeeeeccCc--ccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecCCC----
Q 020461           23 DLLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSP----   95 (326)
Q Consensus        23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h--~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~----   95 (326)
                      +++++++.|++|.+||+++++.+.++..+  ...+..++|+|||+++ ++++.++.|.+||+.+++.+........    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            47999999999999999999999888653  4457899999999987 4667899999999999998877754322    


Q ss_pred             --cceeeeecCCeEEEEEcCcccee-------ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           96 --ARSVDFAVGDKLAVITTDPFMEL-------NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        96 --~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                        ...+.++++...++.........       .....++.      ...+.....+.. ...+..+.++|+++++++++.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD------AETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEE------TTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecc------ccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC
Confidence              23456676665544432211100       00111111      112233333333 345778999999999988865


Q ss_pred             CCcEEEEECCCCccccccccccC--------------------cceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceE
Q 020461          167 DAIVRIWDTETGKLLKESDKETG--------------------HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~--------------------h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (326)
                      +  +.+||..+++....+.....                    +...........+......++.++.+.+||..++...
T Consensus       155 ~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         155 D--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             S--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             C--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence            4  67899988765543321100                    0011111112222233334455667999999888765


Q ss_pred             EEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEE
Q 020461          227 KTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFS  304 (326)
Q Consensus       227 ~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~la  304 (326)
                      ....  .........+++++..++...+                .+++|+....+.+..+ .+...+.+++|+|||++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~  295 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGAYN----------------VLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEES----------------EEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEE
T ss_pred             EEEecCCCcceEEEEecccceEEEEccc----------------cEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEE
Confidence            5432  3345667778887776654321                2344554444444333 2456789999999999999


Q ss_pred             eecCCCcEEEeecCCCc
Q 020461          305 SGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       305 t~s~Dg~i~l~~~~~~~  321 (326)
                      +++.|++|++|+.+.-.
T Consensus       296 v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         296 LGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EESBSSEEEEEETTTCC
T ss_pred             EEeCCCcEEEEECCCCc
Confidence            99999999999987643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.4e-21  Score=154.06  Aligned_cols=239  Identities=18%  Similarity=0.282  Sum_probs=161.4

Q ss_pred             CeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec-CCCcceeeeecCCeEEEEEcCccceecee
Q 020461           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSA  121 (326)
Q Consensus        43 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      ..+....+|...|+|++|  |+++|+||+.||+|++||+++++.+..+.. ..++.++.+. +..++.++.+.      .
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~-~~~l~s~s~D~------~   76 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDS------T   76 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-SSEEEEEETTS------C
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc-cceeecccccc------c
Confidence            345566788889998765  789999999999999999999999888763 4566666552 33333333333      2


Q ss_pred             eeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcC
Q 020461          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (326)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~  201 (326)
                      +.++.+..      +........+.  .....+.+....++++..++.+.+||..+............|...+..+.+.+
T Consensus        77 i~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  148 (293)
T d1p22a2          77 VRVWDVNT------GEMLNTLIHHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  148 (293)
T ss_dssp             EEEEESSS------CCEEEEECCCC--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             cccccccc------ccccccccccc--cccccccccccceeecccccceeEeeccccccccccccccccccccccceecc
Confidence            33333321      11222222222  22234455667899999999999999987665444444456777787777654


Q ss_pred             CCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceee
Q 020461          202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (326)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (326)
                        ..+++++.|+.|++||.++++++..+... ..+..+.++  +..++++ +.|+             .+++|+......
T Consensus       149 --~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~dg-------------~i~i~d~~~~~~  210 (293)
T d1p22a2         149 --KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG-SSDN-------------TIRLWDIECGAC  210 (293)
T ss_dssp             --TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEE-ETTS-------------CEEEEETTTCCE
T ss_pred             --cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEe-cCCC-------------EEEEEeccccee
Confidence              47899999999999999999998887643 345555554  3444443 3333             234555555555


Q ss_pred             eccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          281 IGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       281 ~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      +....+|...|..  +++++.+|++|+.||.|++|++.
T Consensus       211 ~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         211 LRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHH
T ss_pred             eeeecccceeeee--ccccceEEEEEcCCCEEEEEECC
Confidence            5666778777765  45678999999999999999864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=3.4e-21  Score=166.27  Aligned_cols=246  Identities=13%  Similarity=-0.023  Sum_probs=167.8

Q ss_pred             CEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeee
Q 020461           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA  102 (326)
Q Consensus        23 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  102 (326)
                      -++++.+.|++|.|||.++++++..+..|. .+..++|+|||+++++++.|+++++||+.+++......           
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~-----------  100 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE-----------  100 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-----------
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE-----------
Confidence            346899999999999999999999998874 68999999999999999999999999998765322110           


Q ss_pred             cCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEeeCCCcEEEEECCCCccc
Q 020461          103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLL  181 (326)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~  181 (326)
                                                          +....+|.+.+.+..|+|+|++| ++++.+++|++||..+++..
T Consensus       101 ------------------------------------i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~  144 (432)
T d1qksa2         101 ------------------------------------IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  144 (432)
T ss_dssp             ------------------------------------EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             ------------------------------------EecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccce
Confidence                                                00011233344455688999975 68889999999999988776


Q ss_pred             ccccc--------ccCcceeeEEEEEcCCCCeE-EEEeCCCeEEEeecCCcceEE--EEeeccceEEEEeCCCCCeeEEe
Q 020461          182 KESDK--------ETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIK--TYVTERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       182 ~~~~~--------~~~h~~~v~~v~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~  250 (326)
                      ..+..        ...+......+.+++++..+ ++...++.|.+||..+.+...  .+.....+..++++|+++.++++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va  224 (432)
T d1qksa2         145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA  224 (432)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             eeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEe
Confidence            54321        12344556788899999876 456678999999998876543  44556678899999999988776


Q ss_pred             cCCCcceeEeecccCceeeeEe-----------------------------eccc---ceeeeccccccCcceeEEEECC
Q 020461          251 GGQDASAVTTTDHRAGKFEAKF-----------------------------FDKI---LQEEIGGVKGHFGPINALAFNP  298 (326)
Q Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~-----------------------------~~~~---~~~~~~~~~~h~~~v~~v~~s~  298 (326)
                      ...+.. +...|...+.....+                             ++..   ..........|...|....++|
T Consensus       225 ~~~~~~-v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~  303 (432)
T d1qksa2         225 ANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL  303 (432)
T ss_dssp             EGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             ccccce-EEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcC
Confidence            544332 223333222111100                             0000   0000011223445677778888


Q ss_pred             CCceEEeecCCCcEEEeec
Q 020461          299 DGKSFSSGGEDGYVRLHHF  317 (326)
Q Consensus       299 d~~~lat~s~Dg~i~l~~~  317 (326)
                      ++..+++++.|++.++|..
T Consensus       304 ~g~~~~~~s~p~~~~lw~~  322 (432)
T d1qksa2         304 GGGSLFIKTHPNSQYLYVD  322 (432)
T ss_dssp             CSCCCCEECCTTCSEEEEE
T ss_pred             CCCeEEEEecCCccceeec
Confidence            8887888888888777753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=2.8e-21  Score=161.17  Aligned_cols=279  Identities=13%  Similarity=-0.006  Sum_probs=170.2

Q ss_pred             EEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCCeE-EEEeCCCcEEEEEccCCcEEEEEecC
Q 020461           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFD   93 (326)
Q Consensus        16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~   93 (326)
                      ++|++++++|++++.|++|.+||+++++.+.+++- |...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46899999999999999999999999999998874 55668899999999987 55567899999999999888776543


Q ss_pred             CC-------cceeeeecCCeEEEEEcCcccee-------ceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           94 SP-------ARSVDFAVGDKLAVITTDPFMEL-------NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        94 ~~-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      ..       ...+.++++...+.+........       ...+.........   ....+.... ....+..+.+++++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL---EAKPVRTFP-MPRQVYLMRAADDGS  157 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG---GBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce---eeeEEEeee-ccCceEEEEecCCCE
Confidence            22       33456676655444432211000       0111111111000   000011111 112344455666666


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEc--------------------------CCCCeEEEEeCCC
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA--------------------------ADGSHFLTGSLDK  213 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s--------------------------~~~~~l~s~s~dg  213 (326)
                      .++++   +.+.+||..+++....+...    .....+.++                          .....++++..++
T Consensus       158 ~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         158 LYVAG---PDIYKMDVKTGKYTVALPLR----NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             EEEES---SSEEEECTTTCCEEEEECST----TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             EEEeC---CcceEEEccCCCEEEEEecC----CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence            55543   45889998887765543211    111122222                          2333445566677


Q ss_pred             eEEEeecCCcceEEEEe--eccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcce
Q 020461          214 SAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI  291 (326)
Q Consensus       214 ~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  291 (326)
                      .+.+||..++.......  ....+....+++.+..++.... +              .+..|+....+.+..+. +...+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~v~v~d~~~~~~~~~~~-~~~~~  294 (346)
T d1jmxb_         231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-N--------------RLAKYDLKQRKLIKAAN-LDHTY  294 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-S--------------EEEEEETTTTEEEEEEE-CSSCC
T ss_pred             eEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-C--------------eEEEEECCCCcEEEEEc-CCCCE
Confidence            78889998877655543  3345666777777666554322 1              23445544444333322 33468


Q ss_pred             eEEEECCCCceEEeecCCCcEEEeecCCCc
Q 020461          292 NALAFNPDGKSFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       292 ~~v~~s~d~~~lat~s~Dg~i~l~~~~~~~  321 (326)
                      .+++|||||++|++++.||.|++|+.+.-.
T Consensus       295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            999999999999999999999999987543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=2.5e-18  Score=145.09  Aligned_cols=295  Identities=8%  Similarity=-0.032  Sum_probs=183.9

Q ss_pred             eeecCCceeEEEEccCCCEEEeec-----CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe---------
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCA-----KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS---------   71 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~-----~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~---------   71 (326)
                      ...+..++..++++|||++++...     ..+.|.+||.++++.+.++..+..+  .++|+|||++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            346788899999999999887642     3457889999999999988776654  689999999998875         


Q ss_pred             -CCCcEEEEEccCCcEEEEEecCCCc--------ceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEE
Q 020461           72 -ADQTAKLWNVETGAQLFTFNFDSPA--------RSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLI  141 (326)
Q Consensus        72 -~d~~i~~wd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (326)
                       .++.|++||..+++.+..+......        ..+.++++++...+.. .+    .....++..      ....    
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----~~~~~~~~~------~~~~----  159 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA----GPAVGLVVQ------GGSS----  159 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC----CCceEEeec------cCCe----
Confidence             4578999999999887665432211        2223333333221111 10    000011110      0011    


Q ss_pred             eccCccceeEEEEecCCcE-EEEeeCCCcEEEEECCCCcccccccc---ccCcceeeEEEEEcCCCCeEEEEeCCCeEEE
Q 020461          142 LKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDK---ETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (326)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~i  217 (326)
                      ...+.....++.++|+++. +++.+.|+.+.+||...++.......   ..++......+.+++++ .++..+.++.+++
T Consensus       160 ~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~  238 (373)
T d2madh_         160 DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQ  238 (373)
T ss_pred             EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEE
Confidence            1122334567889999874 56888999999999987765543221   11222334455666665 4556677899999


Q ss_pred             eecCCcceEEEEee-------------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccc
Q 020461          218 WDARTLELIKTYVT-------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV  284 (326)
Q Consensus       218 wd~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  284 (326)
                      |+..+.+.......             +.....+++++++..++.........+...    ....+.+|+...++.+..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA----AAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeec----CCCeEEEEECCCCcEEEEe
Confidence            99887654322211             112345667777766665544333222111    1123556666666555544


Q ss_pred             cccCcceeEEEECCCCce--EEeecCCCcEEEeecCCCce
Q 020461          285 KGHFGPINALAFNPDGKS--FSSGGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       285 ~~h~~~v~~v~~s~d~~~--lat~s~Dg~i~l~~~~~~~~  322 (326)
                       .+...+..++|+|||+.  +++++.|++|++|+....-.
T Consensus       315 -~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         315 -SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             -cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence             35567899999999984  57899999999999876543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=3.2e-18  Score=139.66  Aligned_cols=229  Identities=11%  Similarity=0.060  Sum_probs=164.8

Q ss_pred             CceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~   88 (326)
                      ..+..++|+|||++| ++++.++.|++||+.+++.+..+..|.. +..++|+++++.++ ++..++.+.+|+..+++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeee
Confidence            456889999999977 5777899999999999999999887764 57789999998654 55577889999999998888


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCC-
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-  167 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-  167 (326)
                      .+........+.+.++...+.+.....    .....+..      ........+.. ...+..+.++|++..+++++.+ 
T Consensus       111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         111 TVKTGKSPLGLALSPDGKKLYVTNNGD----KTVSVINT------VTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTT----TEEEEEET------TTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTT
T ss_pred             eccccccceEEEeecCCCeeeeeeccc----cceeeeec------cccceeeeccc-CCCceEEEeeccccceeeecccc
Confidence            777666666777777665544332211    11111111      11223333333 3457788999999888776655 


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC---CCeEEEeecCCcceEEEEeeccceEEEEeCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  244 (326)
                      +.+.+|+....+......    ....+..+++++++..++.++.   +++|++||.++++.+..+.....+..++++|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg  255 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG  255 (301)
T ss_dssp             TEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred             cccccccccceeeeeccc----ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCC
Confidence            567777776655443322    3345778899999998876643   468999999999999888877788999999999


Q ss_pred             CeeEEecCCCc
Q 020461          245 DHVVLGGGQDA  255 (326)
Q Consensus       245 ~~~~~~~~~~~  255 (326)
                      +.++++++.+.
T Consensus       256 ~~l~va~~~~~  266 (301)
T d1l0qa2         256 KKVYVALSFCN  266 (301)
T ss_dssp             SEEEEEETTTT
T ss_pred             CEEEEEECCCC
Confidence            98876655443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.4e-17  Score=136.44  Aligned_cols=279  Identities=11%  Similarity=0.102  Sum_probs=167.1

Q ss_pred             EEEeecCCCCeEEEecCCCCeeee--ccCcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCCcEEE----EEecCCCc
Q 020461           24 LLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLF----TFNFDSPA   96 (326)
Q Consensus        24 ~l~s~~~d~~v~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~----~~~~~~~~   96 (326)
                      .+++++.|++|++|++.+...+..  ...|.+.|..++|+|||++|++++ .|+.|++|++.......    ........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            467888999999999875543322  236788999999999999986555 58999999997654322    22233445


Q ss_pred             ceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CCCcEEEEEC
Q 020461           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDT  175 (326)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d~~i~~wd~  175 (326)
                      ..+.++++++.+++......    .+..+....    ...........+...+.++.++|++++++.++ .+..|.+|+.
T Consensus        86 ~~l~~spDg~~l~v~~~~~~----~v~~~~~~~----~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAG----NVSVTRLED----GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTT----EEEEEEEET----TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             eEEEEcCCCCEEeecccCCC----ceeeecccc----ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            56788887766555432111    111111111    00112223344556678899999999877665 4567999998


Q ss_pred             CCCccccccc---cccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcc----eEEEEe-------eccceEEEEe
Q 020461          176 ETGKLLKESD---KETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE----LIKTYV-------TERPVNAVTM  240 (326)
Q Consensus       176 ~~~~~~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~----~~~~~~-------~~~~~~~~~~  240 (326)
                      ..........   ...........+++++++..++... ..+...+|+.....    ......       .......+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            6543322110   1122334567899999998877655 55667777754321    111111       1123556788


Q ss_pred             CCCCCeeEEecCCCc-ceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEee-cCCCcEEEeecC
Q 020461          241 SPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSG-GEDGYVRLHHFD  318 (326)
Q Consensus       241 s~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~-s~Dg~i~l~~~~  318 (326)
                      +++++.+++....+. ..+...+.....           ........+...+..++|+|||++|+++ +.+++|++|++|
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSV-----------LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCC-----------EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCCE-----------EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            999988776654332 222111111111           1111112233457889999999987655 567999999888


Q ss_pred             CCc
Q 020461          319 PDY  321 (326)
Q Consensus       319 ~~~  321 (326)
                      .+.
T Consensus       307 ~~t  309 (333)
T d1ri6a_         307 GEQ  309 (333)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.4e-18  Score=141.64  Aligned_cols=217  Identities=15%  Similarity=0.093  Sum_probs=150.3

Q ss_pred             cCCceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCccc-----ceEEEEEcCCCCeEEEEe-----------
Q 020461            9 HERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGS-----------   71 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~l~s~~-----------   71 (326)
                      +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..     .+..++|+|+++++++++           
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            34457899999999987 5677899999999999999887766543     356789999999988876           


Q ss_pred             -CCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCcccee--ceeeeeeeeccC----------------CC
Q 020461           72 -ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--NSAIHVKRIARD----------------PA  132 (326)
Q Consensus        72 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------------~~  132 (326)
                       .+..+.+||..+++....+........+.++++.+.+++........  ............                ..
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeecc
Confidence             46788899999998887777666666777776665444433211000  000000000000                00


Q ss_pred             C----------------------------------CCCc-eEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCC
Q 020461          133 D----------------------------------QGGE-SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET  177 (326)
Q Consensus       133 ~----------------------------------~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~  177 (326)
                      .                                  ..+. .......+...+..+.++|++.+++.+  ++.|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~  269 (337)
T d1pbyb_         192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCC
Confidence            0                                  0000 111122334455667788888877655  58899999999


Q ss_pred             CccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee
Q 020461          178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       178 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (326)
                      ++.+..+.    +...+.+++++|||++|++++.|++|++||.++++.+.++..
T Consensus       270 ~~~~~~~~----~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         270 NASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CcEEEEEc----CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            98876653    456688999999999999999999999999999999888753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=6.5e-16  Score=129.00  Aligned_cols=281  Identities=13%  Similarity=0.052  Sum_probs=168.8

Q ss_pred             EEEccCCCEEEee-----cCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEe----------CCCcEEEEE
Q 020461           16 LKYNKDGDLLFSC-----AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWN   80 (326)
Q Consensus        16 ~~~s~~~~~l~s~-----~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~----------~d~~i~~wd   80 (326)
                      .+.+||+++++..     +.+..|.+||..+++.+.++..+..+  .++|+||+++|+.++          .|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            3558999988764     34667999999999999888765444  689999999887654          478999999


Q ss_pred             ccCCcEEEEEecCC--------CcceeeeecCCeEEEEEc-CccceeceeeeeeeeccCCCCCCCceEEEeccCc-----
Q 020461           81 VETGAQLFTFNFDS--------PARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQ-----  146 (326)
Q Consensus        81 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  146 (326)
                      ..+++.+..+....        ....+.++++...+.+.. ...    ....++..      ..++.+..+..+.     
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA----PAVGVVDL------EGKAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS----CEEEEEET------TTTEEEEEEECCSEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC----ceeeeeec------CCCcEeeEEecCCcceEe
Confidence            99998877664321        123455666555443322 110    01111111      1122222222221     


Q ss_pred             --cceeEEEEecCCcEEE-EeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCc
Q 020461          147 --GRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (326)
Q Consensus       147 --~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (326)
                        .....+.++++++.++ ....++.+.+++......        .+...+....+++++..++.++.++.+++|++..+
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP--------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC--------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc--------eecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence              2233455666666544 334455566665543322        23334556677888889999999999999999876


Q ss_pred             ceEEE--Eee-----------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcc
Q 020461          224 ELIKT--YVT-----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP  290 (326)
Q Consensus       224 ~~~~~--~~~-----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~  290 (326)
                      +....  ...           +.....+++++++..+++.........    .......+..|+....+.+..+. +...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~v~v~d~~t~~~~~~~~-~~~~  301 (355)
T d2bbkh_         227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR----HKTASRFVVVLDAKTGERLAKFE-MGHE  301 (355)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC----TTSCEEEEEEEETTTCCEEEEEE-EEEE
T ss_pred             cEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee----ecCCCCeEEEEeCCCCcEEEEec-CCCC
Confidence            54211  110           011234677777777665433221110    01112245566655555444433 3356


Q ss_pred             eeEEEECCCCc--eEEeecCCCcEEEeecCCCc
Q 020461          291 INALAFNPDGK--SFSSGGEDGYVRLHHFDPDY  321 (326)
Q Consensus       291 v~~v~~s~d~~--~lat~s~Dg~i~l~~~~~~~  321 (326)
                      +.+++|+|||+  ++++++.|++|++|+....-
T Consensus       302 ~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            88999999998  46788889999999986543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=3.8e-16  Score=130.42  Aligned_cols=261  Identities=10%  Similarity=0.012  Sum_probs=159.0

Q ss_pred             eEEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCccc-------ceEEEEEcCCCCeEEEEe--CCC
Q 020461           14 TYLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHNG-------AVWCCDVSRDSMTLITGS--ADQ   74 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h~~-------~V~~~~~~~~~~~l~s~~--~d~   74 (326)
                      ..++|||||++|+.++          .|+.|++||..+++.+..+..+..       ....++|++++++++.++  .+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            4789999999887643          478999999999998877654322       234678999999877765  567


Q ss_pred             cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEE----eccCcccee
Q 020461           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI----LKGPQGRIN  150 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~  150 (326)
                      .+.+|+..+++.+..+......... .......+..+.+.....      .....    ........    ...+...+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~------v~~~~----~~~~~~~~~~~~~~~~~~~~~  198 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIF-PTAPDTFFMHCRDGSLAK------VAFGT----EGTPEITHTEVFHPEDEFLIN  198 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEE-EEETTEEEEEETTSCEEE------EECCS----SSCCEEEECCCCSCTTSCBCS
T ss_pred             eeeeeecCCCcEeeEEecCCcceEe-ecCCcceEEEcCCCCEEE------EEecC----CCeEEEEecccccceecceee
Confidence            8899999998877665432211110 001111111111110000      00000    00000000    012233455


Q ss_pred             EEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCc----------ceeeEEEEEcCCCCeEEEEeCC--------
Q 020461          151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH----------KKTITSLAKAADGSHFLTGSLD--------  212 (326)
Q Consensus       151 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h----------~~~v~~v~~s~~~~~l~s~s~d--------  212 (326)
                      ...+.+.+..++.++.++.+.+|++..++... +.....+          ......+++++++..++..+.+        
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  277 (355)
T d2bbkh_         199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF-LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  277 (355)
T ss_dssp             CCEEETTTTEEEEEBTTSEEEEEECTTSSCEE-CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             eccccCCCCeEEEecCCCeEEEEecCCCcEEE-EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence            56778888889999999999999998765421 1111111          1223457888999888776544        


Q ss_pred             --CeEEEeecCCcceEEEEeeccceEEEEeCCCCCee-EEecCCCcceeEeecccCceeeeEeecccceeeeccccccCc
Q 020461          213 --KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG  289 (326)
Q Consensus       213 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~  289 (326)
                        ..|.+||..+++.+..+..+..+.+++++|+++.+ +++++.+.             .+.+|+..+++.+..+.++..
T Consensus       278 ~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~-------------~i~v~D~~tg~~~~~i~~~G~  344 (355)
T d2bbkh_         278 ASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK-------------TLYIHDAESGEELRSVNQLGH  344 (355)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTT-------------EEEEEETTTCCEEEEECCCCS
T ss_pred             CCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCC-------------EEEEEECCCCCEEEEEeCcCC
Confidence              36999999999999988877788999999999864 44444332             244555555555555555544


Q ss_pred             ceeEEEECCC
Q 020461          290 PINALAFNPD  299 (326)
Q Consensus       290 ~v~~v~~s~d  299 (326)
                      .-..+.+.++
T Consensus       345 ~p~~i~~~d~  354 (355)
T d2bbkh_         345 GPQVITTADM  354 (355)
T ss_dssp             SCCEEECCCC
T ss_pred             CccEEEeCCC
Confidence            4455555544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=7.4e-16  Score=127.80  Aligned_cols=220  Identities=12%  Similarity=0.054  Sum_probs=138.3

Q ss_pred             ecCCceeEEEEccCCCEE-EeecCCCCeEEEecCCCCeeeeccCc------ccceEEEEEcCCCCeEEEEe---------
Q 020461            8 GHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMTLITGS---------   71 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l-~s~~~d~~v~iw~~~~~~~~~~~~~h------~~~V~~~~~~~~~~~l~s~~---------   71 (326)
                      .|...+.+++|+|||+++ ++++.++.|++||+.+++.+..+...      ...+..++|+|||+++++++         
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            345567899999999976 56678899999999999888766432      22456789999999887765         


Q ss_pred             ---CCCcEEEEEccCCcEEEEE---ecCCCcceeeeecCCeEEEEEcCcc-ceece-----ee-----------------
Q 020461           72 ---ADQTAKLWNVETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPF-MELNS-----AI-----------------  122 (326)
Q Consensus        72 ---~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~-----------------  122 (326)
                         .+..+.+|+..+++....+   ............++..+.+...... .....     .+                 
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  196 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccE
Confidence               4677889988776543211   1111111122222222222111000 00000     00                 


Q ss_pred             -----------eeee--------------------eccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461          123 -----------HVKR--------------------IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (326)
Q Consensus       123 -----------~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  171 (326)
                                 ....                    +.................+...+..+.+++++..++.... +.|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~  275 (346)
T d1jmxb_         197 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLA  275 (346)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEE
T ss_pred             EEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEE
Confidence                       0000                    0000000001112233445566777888888887776654 5699


Q ss_pred             EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec
Q 020461          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (326)
Q Consensus       172 ~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  232 (326)
                      +||..+++.+..+.    +...+.+++++|||++|++++.|+.|++||.++++.+.++..+
T Consensus       276 v~d~~~~~~~~~~~----~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         276 KYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEECCCCcEEEEEc----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            99999988776543    3346889999999999999999999999999999999887643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.2e-13  Score=113.67  Aligned_cols=244  Identities=9%  Similarity=0.074  Sum_probs=148.4

Q ss_pred             ecCCceeEEEEccCCCEEE-eecCCCCeEEEecCCCCeeeeccC---cccceEEEEEcCCCCeEEEEeC-CCcEEEEEcc
Q 020461            8 GHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRG---HNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVE   82 (326)
Q Consensus         8 ~h~~~i~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~~~-d~~i~~wd~~   82 (326)
                      .|...+..++|||||++|+ ++..|+.|++|++.......++..   +...+..++|+|||++|++++. ++++++|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            6788899999999999885 555689999999887654433332   3345678999999999988885 6789999887


Q ss_pred             CCcEEEEEe---cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           83 TGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        83 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      .........   ......++.++++...........    ..+..+..........................++|++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             cccceecccccCCCccceEEEeeecceeeecccccc----ceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            665443332   233455566777665544332211    1111111111100000000111112234457789999988


Q ss_pred             EEEE-eeCCCcEEEEECCCCcccc----c---cccccCcceeeEEEEEcCCCCeEEEE-eCCCeEEEeecCCcceEEEE-
Q 020461          160 TIIS-AGEDAIVRIWDTETGKLLK----E---SDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTY-  229 (326)
Q Consensus       160 ~l~s-~~~d~~i~~wd~~~~~~~~----~---~~~~~~h~~~v~~v~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~-  229 (326)
                      .++. ....+...+|+........    .   .............+++++++++++.. ..++.+.+|++......... 
T Consensus       190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (333)
T d1ri6a_         190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  269 (333)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE
Confidence            7654 4566778888864322111    0   11111223445678899999876655 55789999988754333222 


Q ss_pred             ---eeccceEEEEeCCCCCeeEEecCCCc
Q 020461          230 ---VTERPVNAVTMSPLLDHVVLGGGQDA  255 (326)
Q Consensus       230 ---~~~~~~~~~~~s~~~~~~~~~~~~~~  255 (326)
                         .....+..++|+|+++.+++++..+.
T Consensus       270 ~~~~~~~~p~~~a~spDGk~l~va~~~~~  298 (333)
T d1ri6a_         270 GFQPTETQPRGFNVDHSGKYLIAAGQKSH  298 (333)
T ss_dssp             EEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             EEeCCCCCeeEEEEeCCCCEEEEEECCCC
Confidence               22345678999999999888765443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=1.1e-12  Score=109.88  Aligned_cols=256  Identities=7%  Similarity=-0.067  Sum_probs=154.2

Q ss_pred             eEEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCcccce-------EEEEEcCCCCeEEEEe--CCC
Q 020461           14 TYLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHNGAV-------WCCDVSRDSMTLITGS--ADQ   74 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h~~~V-------~~~~~~~~~~~l~s~~--~d~   74 (326)
                      ..++|||||++|++++          .++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence            3789999999998875          45789999999999988887766544       3467888888665544  456


Q ss_pred             cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEE--EcCccceeceeeeeeeeccCCCCCCCceEEEe------ccCc
Q 020461           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI--TTDPFMELNSAIHVKRIARDPADQGGESVLIL------KGPQ  146 (326)
Q Consensus        75 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  146 (326)
                      .+.+|+....+......   ...++.+.++.....+  ..+..      +.++....      +......      .+..
T Consensus       149 ~~~~~~~~~~~~~~~~~---~~~~~~~s~~g~~~~v~~~~dg~------~~~~~~~~------~~~~~~~~~~~~~~~~~  213 (373)
T d2madh_         149 AVGLVVQGGSSDDQLLS---SPTCYHIHPGAPSTFYLLCAQGG------LAKTDHAG------GAAGAGLVGAMLTAAQN  213 (373)
T ss_pred             ceEEeeccCCeEEEEec---cceeEEEecCCCcEEEEEcCCCe------EEEEEcCC------ceeeEEEeeeccccCcc
Confidence            78899988766544332   1233344443332221  11111      11111110      1111111      1111


Q ss_pred             cceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCc----------ceeeEEEEEcCCCCe----------E
Q 020461          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH----------KKTITSLAKAADGSH----------F  206 (326)
Q Consensus       147 ~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h----------~~~v~~v~~s~~~~~----------l  206 (326)
                      .......+++++ .++..+.++.+.+|+..+........ ...+          ......+++++++..          +
T Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  291 (373)
T d2madh_         214 LLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAP-IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             ceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEe-eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence            222334445544 44556678889999887654321110 0000          112233445555444          4


Q ss_pred             EEEeCCCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeE-EecCCCcceeEeecccCceeeeEeecccceeeecccc
Q 020461          207 LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVV-LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (326)
Q Consensus       207 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  285 (326)
                      ++...++.+.+||..+++.+..+.....+..++|+|+++.++ ++++.+.             .+++|+..+++.++.+.
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~-------------~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTE-------------VLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCC-------------eEEEEECCCCCEEEEEC
Confidence            556667889999999999999988888899999999998754 4443332             34567777777777777


Q ss_pred             ccCcceeEEEECCC
Q 020461          286 GHFGPINALAFNPD  299 (326)
Q Consensus       286 ~h~~~v~~v~~s~d  299 (326)
                      ++....+.+++.++
T Consensus       359 ~~g~~P~~l~~~~~  372 (373)
T d2madh_         359 ELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCCCcEEEEecC
Confidence            77667777777543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1e-12  Score=110.21  Aligned_cols=244  Identities=9%  Similarity=-0.041  Sum_probs=144.8

Q ss_pred             eEEEEccCCCEEEeec----------CCCCeEEEecCCCCeeeeccCcccc-------eEEEEEcCCCCeEEEEe-CCCc
Q 020461           14 TYLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHNGA-------VWCCDVSRDSMTLITGS-ADQT   75 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~h~~~-------V~~~~~~~~~~~l~s~~-~d~~   75 (326)
                      ..++|+|||++|+..+          .|+.|++||..+++.+..+..+...       ...++|+|||++++.++ .++.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            3589999999888654          4778999999999988877644322       34689999999988776 5799


Q ss_pred             EEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        76 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      +.+||+.+++.+..........                                         .              ..
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~-----------------------------------------~--------------~~  172 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFH-----------------------------------------I--------------HP  172 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCC-----------------------------------------C--------------EE
T ss_pred             EEEEECCCCcEeEEeeccCcce-----------------------------------------E--------------cc
Confidence            9999999887665432211000                                         0              00


Q ss_pred             cCCcEEEEeeCCCcEEEEECCCCcccccc---ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee-
Q 020461          156 PLNRTIISAGEDAIVRIWDTETGKLLKES---DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-  231 (326)
Q Consensus       156 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-  231 (326)
                      .....++..+.||++.+|+..........   .....+...+..+.+.+++..+.+.+  +.+++++....+....... 
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~~~~~~~~  250 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGATMKAAID  250 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCEEECCCC
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC--CCEEEEeecCCceEEEeecc
Confidence            00123444555666666665433221110   11123344455667777776665544  4455666554433222110 


Q ss_pred             ------------ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCC
Q 020461          232 ------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (326)
Q Consensus       232 ------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d  299 (326)
                                  ......+++++++..+++....+...     .......+..|+..+.+.+..+. +...+..++||||
T Consensus       251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~-----~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spD  324 (368)
T d1mdah_         251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS-----CLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQD  324 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC-----TTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCS
T ss_pred             cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCce-----eecCCceEEEEECCCCcEeEEec-CCCceeEEEECCC
Confidence                        01123466777777665543222110     01122345566666665555443 3357899999999


Q ss_pred             Cce--EEeecCCCcEEEeecCCC
Q 020461          300 GKS--FSSGGEDGYVRLHHFDPD  320 (326)
Q Consensus       300 ~~~--lat~s~Dg~i~l~~~~~~  320 (326)
                      |+.  +++++.|++|++|+....
T Consensus       325 G~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         325 GASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSSC
T ss_pred             CCEEEEEEeCCCCeEEEEECCCC
Confidence            973  578888999999987654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=9.3e-12  Score=107.73  Aligned_cols=82  Identities=6%  Similarity=-0.087  Sum_probs=67.2

Q ss_pred             eeecCCceeEEEEccCCCEEEeecC---------CCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcE
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA   76 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~~~---------d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i   76 (326)
                      +..|...|.++.|||||++|+.++.         ++.+.|||+++++. ..+..|.+.+..+.|||||+.++.. .++.+
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l  134 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccc
Confidence            4456678999999999999998753         56788999998874 4678889999999999999998875 56789


Q ss_pred             EEEEccCCcEEEE
Q 020461           77 KLWNVETGAQLFT   89 (326)
Q Consensus        77 ~~wd~~~~~~~~~   89 (326)
                      .+|+..+++....
T Consensus       135 ~~~~~~~g~~~~~  147 (470)
T d2bgra1         135 YVKIEPNLPSYRI  147 (470)
T ss_dssp             EEESSTTSCCEEC
T ss_pred             eEEECCCCceeee
Confidence            9999988876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.41  E-value=4.3e-12  Score=106.86  Aligned_cols=290  Identities=13%  Similarity=0.047  Sum_probs=162.7

Q ss_pred             cCCceeEEEEccCCCEEEe-ecCCCCeEEEecCCCCeeeeccC-cccceEEEEEcCCCC--eEEEEeCCC----------
Q 020461            9 HERPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSM--TLITGSADQ----------   74 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s-~~~d~~v~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~--~l~s~~~d~----------   74 (326)
                      |.....+..++|||++|+. ...+.+|.++|+.++++...+.- +......++|+|+++  +++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            5555666777899998855 45788999999999988776543 456788999999998  444444332          


Q ss_pred             -------cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCcc
Q 020461           75 -------TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (326)
Q Consensus        75 -------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (326)
                             .+..+|..+.+.............+.++++.+.+++..........   .......    ....+....    
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~---id~~t~~----~~d~i~v~n----  218 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVD---LAGTMRN----DRDWVVVFN----  218 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSS---HHHHTCS----SBCEEEEEE----
T ss_pred             ccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEE---EeccCcc----eEEEEEeCC----
Confidence                   1244777777776666655566677788877766654322110000   0000000    000111111    


Q ss_pred             ceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEE-EEeCCCeEEEeecCCcceE
Q 020461          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLELI  226 (326)
Q Consensus       148 ~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~  226 (326)
                      .-....+.|+|+++.. +.++.+.+++....+....+..    ......+.++|||++++ ++..+++|.+||+++.+..
T Consensus       219 ~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPv----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         219 VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPV----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECC----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeC----CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH
Confidence            1112335678886654 4467787887666555544321    23356789999999875 5678999999998763321


Q ss_pred             --------EEEeec----cceEEEEeCCCCCeeEEecCCCcceeEeecccCc------eeeeEeecccceeeeccccccC
Q 020461          227 --------KTYVTE----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG------KFEAKFFDKILQEEIGGVKGHF  288 (326)
Q Consensus       227 --------~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~~~~~~~~~~~~~~h~  288 (326)
                              ..+..+    --..-.+|.+.+... ++..-|.. +..|+....      .....+++   ...++.-.||.
T Consensus       294 ~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y-ts~~~ds~-v~kw~~~~~~~~~~~~~~~~v~~---~~~v~y~~GH~  368 (441)
T d1qnia2         294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY-TTLFIDSQ-VCKWNIADAIKHYNGDRVNYIRQ---KLDVQYQPGHN  368 (441)
T ss_dssp             TTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE-EEETTTTE-EEEEEHHHHHHHHTTCCCCCEEE---EEECSSCEEEE
T ss_pred             hhccCCcceEEEeecccccCcccceecCCceEE-Ecccccce-EEEeccchhhhhhccCCCceeEe---ccccccCCCCC
Confidence                    001110    112234566655432 22222211 222221000      00000111   11223335898


Q ss_pred             cceeEEEECCCCceEEee---cCCCcEEEeecCC
Q 020461          289 GPINALAFNPDGKSFSSG---GEDGYVRLHHFDP  319 (326)
Q Consensus       289 ~~v~~v~~s~d~~~lat~---s~Dg~i~l~~~~~  319 (326)
                      ..+.+.+|+|||++|+++   |.|..+-+=-+.|
T Consensus       369 ~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~  402 (441)
T d1qnia2         369 HASLTESRDADGKWLVVLSKFSKDRFLPVGPLHP  402 (441)
T ss_dssp             EETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCC
T ss_pred             ccccccccCCCCcEEEecCccccccCcCCCCCCC
Confidence            899999999999999999   6665554433333

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=1.9e-11  Score=105.69  Aligned_cols=149  Identities=9%  Similarity=0.145  Sum_probs=104.3

Q ss_pred             eEEEEccCCCEEEeecCCCCeEEEecCCCCeee-----eccCcccceEEEEEcCCCCeEEEEeC---------CCcEEEE
Q 020461           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-----TYRGHNGAVWCCDVSRDSMTLITGSA---------DQTAKLW   79 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~l~s~~~---------d~~i~~w   79 (326)
                      ..+.|.++++++..  .|+.+.+||..+++...     ++..|...|.++.||||+++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            45789999988764  47789999999998754     34556678999999999999988764         3445566


Q ss_pred             EccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCc
Q 020461           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      |+.+++.                                                     ..+..+...+..+.|||+|+
T Consensus        98 d~~~~~~-----------------------------------------------------~~l~~~~~~~~~~~~SPDG~  124 (470)
T d2bgra1          98 DLNKRQL-----------------------------------------------------ITEERIPNNTQWVTWSPVGH  124 (470)
T ss_dssp             ETTTTEE-----------------------------------------------------CCSSCCCTTEEEEEECSSTT
T ss_pred             ECCCCcc-----------------------------------------------------cccccCCccccccccccCcc
Confidence            6655432                                                     11234456677889999999


Q ss_pred             EEEEeeCCCcEEEEECCCCcccccccccc---------------CcceeeEEEEEcCCCCeEEEEeCCCe-EEEe
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKET---------------GHKKTITSLAKAADGSHFLTGSLDKS-AKLW  218 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------------~h~~~v~~v~~s~~~~~l~s~s~dg~-i~iw  218 (326)
                      .++... ++.+.+|+..+++..+......               ........+.|||||++|+....|.+ +..|
T Consensus       125 ~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         125 KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             eeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence            999854 6679999998876544221100               01223456789999999999876544 4433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=1.3e-10  Score=97.67  Aligned_cols=281  Identities=10%  Similarity=-0.010  Sum_probs=137.5

Q ss_pred             EEeecCCCCeEEEecCCCCeeeecc------------------------------CcccceEEEEEcCCCCeEEEEe-CC
Q 020461           25 LFSCAKDHTPTVWFADNGERLGTYR------------------------------GHNGAVWCCDVSRDSMTLITGS-AD   73 (326)
Q Consensus        25 l~s~~~d~~v~iw~~~~~~~~~~~~------------------------------~h~~~V~~~~~~~~~~~l~s~~-~d   73 (326)
                      ++|++.+|.|++|++.+++.+.++.                              .|........++|||++|+... .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            6688899999999999887665531                              2444555666788999886665 78


Q ss_pred             CcEEEEEccCCcEEEEEec--CCCcceeeeecCCe--EEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccce
Q 020461           74 QTAKLWNVETGAQLFTFNF--DSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (326)
Q Consensus        74 ~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (326)
                      .+|.++|+.+++.......  ......+.+.++.+  .++...+....+......  +..   .........+......+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~--~~~---~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD--FSL---DNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCG---GGEEEEEEEEETTTCSE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc--ccc---ccccceEEeecCcccee
Confidence            8999999999987766543  23344556665433  222211110000000000  000   00000011111111111


Q ss_pred             -eEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCc-cee------eEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          150 -NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKT------ITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       150 -~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h-~~~------v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                       ..+..... ..-+..+-||.-........+....+...... ...      ...+.++++|+++..+ .++.+.+++..
T Consensus       169 ~~qI~v~~~-p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~  246 (441)
T d1qnia2         169 AWQVIVDGN-LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-DSKVPVVDGRG  246 (441)
T ss_dssp             EEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT-TCCCCEEECSS
T ss_pred             eEEEecCCC-ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC-CCCcEEEEccc
Confidence             11111111 11122222332221111100000000000000 000      0111233455544332 24567777777


Q ss_pred             CcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCcee--e--eEeecccceeeeccccccCcceeEEEEC
Q 020461          222 TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF--E--AKFFDKILQEEIGGVKGHFGPINALAFN  297 (326)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~--~--~~~~~~~~~~~~~~~~~h~~~v~~v~~s  297 (326)
                      ..+.+..+..+.....+.++|++..+++++..+.. +..+|.....-  +  +...+....+.-.+    . .....+|+
T Consensus       247 ~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~t-vsv~d~~k~~~~~~~~~~~~~~~~~~~~~g----l-gplh~~fd  320 (441)
T d1qnia2         247 ESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPT-VSVIAIDKLDDLFEDKIELRDTIVAEPELG----L-GPLHTTFD  320 (441)
T ss_dssp             SCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHTTTSSCGGGGEEECCBCC----S-CEEEEEEC
T ss_pred             CCceEEEEeCCCCccCceECCCCCEEEEeCCcCCc-EEEEEeehhhhHhhccCCcceEEEeecccc----c-Ccccceec
Confidence            77777777777778899999999999888766543 33333221000  0  00000000000000    0 12446899


Q ss_pred             CCCceEEeecCCCcEEEeecC
Q 020461          298 PDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       298 ~d~~~lat~s~Dg~i~l~~~~  318 (326)
                      ++|....|...|.+|..|+++
T Consensus       321 ~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         321 GRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             SSSEEEEEETTTTEEEEEEHH
T ss_pred             CCceEEEcccccceEEEeccc
Confidence            999999999999999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=3.4e-11  Score=100.72  Aligned_cols=216  Identities=6%  Similarity=-0.028  Sum_probs=122.1

Q ss_pred             eEEEEccCCCEEEeec-CCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           14 TYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        14 ~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      ..++|||||++|+.++ .++.+.+||+.+++.+..+..+......   ......+++.+.||++.+|+............
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc---cCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            3589999999888776 5799999999999988877665443221   11234667777888888887765433221110


Q ss_pred             C-------CCcceeeeecCCeEEEEEcCccceece---eeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           93 D-------SPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        93 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                      .       .......+......+............   .........   ....... ...........++++|++..++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~g~~~~a~~~~~~~~~  279 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID---GNESGRK-ADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCC---SSCTHHH-HTTEEECSSSCEEEETTTTEEE
T ss_pred             cccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecc---cccceee-eeeecCCCceeEEEcCCCCEEE
Confidence            0       001111111222221111110000000   000000000   0000000 0000011223467888887665


Q ss_pred             EeeCC---------CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCe--EEEEeCCCeEEEeecCCcceEEEEee
Q 020461          163 SAGED---------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYVT  231 (326)
Q Consensus       163 s~~~d---------~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (326)
                      ....+         ..|.+||..+++.+..+.    +...+.+++++|||+.  ++++..|++|++||..+++.+.++..
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~----~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECCE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEeEEec----CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            44222         258899999998776543    4567889999999973  46777899999999999999998876


Q ss_pred             ccceEEEEe
Q 020461          232 ERPVNAVTM  240 (326)
Q Consensus       232 ~~~~~~~~~  240 (326)
                      ....+.+++
T Consensus       356 g~~P~~l~~  364 (368)
T d1mdah_         356 DKGPESLSV  364 (368)
T ss_dssp             CSCCCEEEC
T ss_pred             CCCCCEEEE
Confidence            555555554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.23  E-value=6.4e-09  Score=86.48  Aligned_cols=270  Identities=9%  Similarity=0.089  Sum_probs=143.0

Q ss_pred             cCCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCc--ccceEEEEEcCCCCe--EEEEe-CCCcEEEEEccC
Q 020461            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMT--LITGS-ADQTAKLWNVET   83 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h--~~~V~~~~~~~~~~~--l~s~~-~d~~i~~wd~~~   83 (326)
                      ....+..|+|+|++++|+++.. +.+..|.+.....+.....+  .+....++++++++.  ++++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445678999999999887765 45777765433222222111  123345677888874  33333 245555544322


Q ss_pred             -CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE
Q 020461           84 -GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (326)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  162 (326)
                       +.....+....                    ...+...                .....+.....+.++.|+|++++++
T Consensus       117 ~~~~~~~~~~~~--------------------~~~~~~~----------------~~~~~~q~~~h~h~v~~sPdG~~l~  160 (365)
T d1jofa_         117 FAGYGNVFSVSE--------------------TGKLEKN----------------VQNYEYQENTGIHGMVFDPTETYLY  160 (365)
T ss_dssp             SCCEEEEEEECT--------------------TCCEEEE----------------EEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CCCcceeEeeee--------------------cceecCc----------------ccCcccCCCCcceEEEECCCCCEEE
Confidence             11111111000                    0000000                0000111223467899999999877


Q ss_pred             Eee-CCCcEEEEECCCCccccccc--cccCcceeeEEEEEcCCCCeEEEEe-CCCeEEEeecCCcceE--EEEee-----
Q 020461          163 SAG-EDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELI--KTYVT-----  231 (326)
Q Consensus       163 s~~-~d~~i~~wd~~~~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~--~~~~~-----  231 (326)
                      ++. ....|.+|+......+....  ...........++++|+++++.... .+++|.+|++......  .....     
T Consensus       161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~  240 (365)
T d1jofa_         161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             EeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccc
Confidence            664 35578888764322221111  1112345678999999999886555 5889999998765322  22110     


Q ss_pred             -------------ccceEEEEeCCCCCeeEEecCCCcc----eeEeeccc-CceeeeEeecccceeeeccccccCcceeE
Q 020461          232 -------------ERPVNAVTMSPLLDHVVLGGGQDAS----AVTTTDHR-AGKFEAKFFDKILQEEIGGVKGHFGPINA  293 (326)
Q Consensus       232 -------------~~~~~~~~~s~~~~~~~~~~~~~~~----~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  293 (326)
                                   ......+.++|+++.++++...+..    .+..++.. .+....       ...+.........-+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~-------~~~~~~~~~~G~~p~~  313 (365)
T d1jofa_         241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK-------QLFLSPTPTSGGHSNA  313 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE-------EEEEEECSSCCTTCCC
T ss_pred             ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceee-------EeEeeEEEcCCCCccE
Confidence                         0124568899999998876432111    12111111 111000       0011111112234577


Q ss_pred             EEECC-CCceEEe-ecCCCcEEEeecCCCce
Q 020461          294 LAFNP-DGKSFSS-GGEDGYVRLHHFDPDYF  322 (326)
Q Consensus       294 v~~s~-d~~~lat-~s~Dg~i~l~~~~~~~~  322 (326)
                      ++|+| +|++|+. +..++.|.+|+++.+.+
T Consensus       314 i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         314 VSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             EEecCCCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence            99998 8897654 46789999999988764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=1e-07  Score=76.90  Aligned_cols=233  Identities=9%  Similarity=-0.029  Sum_probs=135.7

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      .+..++++|||+++++...+++|..|+.. ++ ...+....+.+.+++|+++++++++...++.+..|+.......... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~-  105 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET-  105 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE-
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee-
Confidence            46789999999999999999988888743 43 3344455678999999999998888878888877775432211000 


Q ss_pred             cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  171 (326)
                                                                      ..........+.+++.++++++++-+.++.+.
T Consensus       106 ------------------------------------------------~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1         106 ------------------------------------------------LLTLPDAIFLNGITPLSDTQYLTADSYRGAIW  137 (302)
T ss_dssp             ------------------------------------------------EEECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ------------------------------------------------ccccCCccccceeEEccCCCEEeeccccccce
Confidence                                                            00001122355677788888888877888888


Q ss_pred             EEECCCCcccccc-------ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEE---EeeccceEEEEeC
Q 020461          172 IWDTETGKLLKES-------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT---YVTERPVNAVTMS  241 (326)
Q Consensus       172 ~wd~~~~~~~~~~-------~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~s  241 (326)
                      .+|...+......       ............+.++. +..+++.+..+.|..++.........   +........+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d  216 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD  216 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB
T ss_pred             eeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEEC
Confidence            8887655321100       00011122344555544 34566667788888888765432222   2223456678999


Q ss_pred             CCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEE---CCCCceEEeecCC
Q 020461          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF---NPDGKSFSSGGED  309 (326)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---s~d~~~lat~s~D  309 (326)
                      ++++..++......  +..++.. +.          ...+..........++++|   ++|++.|..++..
T Consensus       217 ~dG~l~va~~~~~~--V~~i~p~-G~----------~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         217 VEGNLYGATHIYNS--VVRIAPD-RS----------TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TTCCEEEECBTTCC--EEEECTT-CC----------EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCEEEEEcCCCc--EEEECCC-CC----------EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            98864443322222  1111111 00          1111112222345789999   7788877655443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=8.1e-08  Score=75.66  Aligned_cols=237  Identities=8%  Similarity=-0.033  Sum_probs=131.2

Q ss_pred             cCCceeEEEEccCCCEEEe-ecCCCCeEEEecCCCCee-eeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcE
Q 020461            9 HERPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s-~~~d~~v~iw~~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~   86 (326)
                      +......++++++|++.++ .+.++.+..++....... ..+.+. .....++++++++++++....+.+++++-.+...
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            4456689999999996665 455566666654433322 222222 2346788888888766655555555443322211


Q ss_pred             EEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeC
Q 020461           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (326)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  166 (326)
                      +..                                                     .........+++++++.++++-..
T Consensus        91 ~~~-----------------------------------------------------~~~~~~p~~iavd~~g~i~v~d~~  117 (260)
T d1rwia_          91 VLP-----------------------------------------------------FDGLNYPEGLAVDTQGAVYVADRG  117 (260)
T ss_dssp             ECC-----------------------------------------------------CCSCCSEEEEEECTTCCEEEEEGG
T ss_pred             eee-----------------------------------------------------eeeeeecccccccccceeEeeccc
Confidence            100                                                     000123455677777777766666


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE-eeccceEEEEeCCCCC
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLD  245 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~  245 (326)
                      +..+..++........ . ...+ ......+++++++..+++...++.|..+|.......... .....+..+++.++++
T Consensus       118 ~~~~~~~~~~~~~~~~-~-~~~~-~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~  194 (260)
T d1rwia_         118 NNRVVKLAAGSKTQTV-L-PFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT  194 (260)
T ss_dssp             GTEEEEECTTCSSCEE-C-CCCS-CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC
T ss_pred             cccccccccccceeee-e-eecc-cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeee
Confidence            6667777664432211 1 1111 234568899999998888888899999998765433221 1224567889988876


Q ss_pred             eeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      ..++... ... +..++....           ...+.. ...-.....|+++++|.++++-..+++|+.+.
T Consensus       195 l~vsd~~-~~~-i~~~~~~~~-----------~~~~~~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         195 VYVTEHN-TNQ-VVKLLAGST-----------TSTVLP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EEEEETT-TTE-EEEECTTCS-----------CCEECC-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eeeeecC-CCE-EEEEeCCCC-----------eEEEEc-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            4433222 111 111111100           000000 11123457899999999888877777776544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=4.8e-07  Score=71.20  Aligned_cols=225  Identities=12%  Similarity=0.049  Sum_probs=117.6

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecCC-CC--eEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC-CCcEEE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD-HT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKL   78 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~d-~~--v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~~i~~   78 (326)
                      ++.+..+...+..-+|||||+.||-.... +.  +.+.+...+.. ..+..+.+......|+|+++.++.... ++...+
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccce
Confidence            44555567778889999999998865433 32  44445555443 344456777888999999998766553 333333


Q ss_pred             EEccCC--cEEEEEecCCCcceeeeecCC-eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEe
Q 020461           79 WNVETG--AQLFTFNFDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (326)
Q Consensus        79 wd~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (326)
                      +.....  ................+.... ..........     ...+......     ......+...........|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         110 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG-----RPQVYKVNIN-----GGAPQRITWEGSQNQDADVS  179 (269)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS-----SCEEEEEETT-----SSCCEECCCSSSEEEEEEEC
T ss_pred             eecccccccceeeeeccccccccccccccccceecccccC-----CceEeeeecc-----cccceeeecccccccccccc
Confidence            332221  111111111111111222222 2222211100     0011111100     01112223344556778899


Q ss_pred             cCCcEEEEeeCCC-cEE--EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeC---CCeEEEeecCCcceEEEE
Q 020461          156 PLNRTIISAGEDA-IVR--IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTY  229 (326)
Q Consensus       156 ~~~~~l~s~~~d~-~i~--~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~  229 (326)
                      |++..++..+.++ ...  +.|...+..  ...   .+........|||||+.|+-.+.   ...|.++++..+...+-.
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~---~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt  254 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATGGV--QVL---SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  254 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCE--EEC---CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             cccceeEEEeecCCceeeeEeecccccc--eEe---ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEe
Confidence            9999887655544 444  445444332  211   12334566789999999875543   346889999876654433


Q ss_pred             eeccceEEEEeCCC
Q 020461          230 VTERPVNAVTMSPL  243 (326)
Q Consensus       230 ~~~~~~~~~~~s~~  243 (326)
                      .....+...+|||-
T Consensus       255 ~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         255 ATDGQVKFPAWSPY  268 (269)
T ss_dssp             CSSSEEEEEEECCC
T ss_pred             CCCCcEEeEEeCCC
Confidence            33445666778773

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=1.7e-06  Score=68.63  Aligned_cols=239  Identities=13%  Similarity=0.137  Sum_probs=138.8

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcc------cceEEEEEcCCC-CeEEEE-eCCCcEEEEEccC
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDS-MTLITG-SADQTAKLWNVET   83 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~------~~V~~~~~~~~~-~~l~s~-~~d~~i~~wd~~~   83 (326)
                      ....++++++|+++++-..++.|++|+. +|+.+..+....      ..-..+++.++. ..+++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            4689999999999988788899999985 466665553211      112233433332 233222 233344444432 


Q ss_pred             CcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEE
Q 020461           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (326)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  163 (326)
                      ++....+.                                                   .........+++.+++..+++
T Consensus       102 g~~~~~~~---------------------------------------------------~~~~~~p~~~avd~~G~i~v~  130 (279)
T d1q7fa_         102 GQFVRKFG---------------------------------------------------ATILQHPRGVTVDNKGRIIVV  130 (279)
T ss_dssp             SCEEEEEC---------------------------------------------------TTTCSCEEEEEECTTSCEEEE
T ss_pred             ccceeecC---------------------------------------------------CCcccccceeccccCCcEEEE
Confidence            22111110                                                   001122345566677777776


Q ss_pred             eeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec---cceEEEEe
Q 020461          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVNAVTM  240 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~  240 (326)
                      ....+.+.+++.. ++.+..+.. ..+......+++++++..+++....+.|++||.. ++.+.++...   ..+..+++
T Consensus       131 ~~~~~~~~~~~~~-g~~~~~~g~-~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giav  207 (279)
T d1q7fa_         131 ECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGI  207 (279)
T ss_dssp             ETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEE
T ss_pred             eeccceeeEeccC-Cceeecccc-cccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccc
Confidence            6666777777754 444433321 2344567788899999888888889999999974 5666666432   24678999


Q ss_pred             CCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecCC
Q 020461          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDP  319 (326)
Q Consensus       241 s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~~  319 (326)
                      .++++..+ +.......+..++ +.+.+...+ ..         .........|++.|||.++++ +.+++|++|++..
T Consensus       208 D~~G~i~V-ad~~~~~~v~~f~-~~G~~~~~~-~~---------~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~  273 (279)
T d1q7fa_         208 NSNGEILI-ADNHNNFNLTIFT-QDGQLISAL-ES---------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  273 (279)
T ss_dssp             CTTCCEEE-EECSSSCEEEEEC-TTSCEEEEE-EE---------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             ccCCeEEE-EECCCCcEEEEEC-CCCCEEEEE-eC---------CCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeee
Confidence            99987444 3222222233333 222221111 10         111234678999999986665 5789999999864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=2.3e-06  Score=69.08  Aligned_cols=239  Identities=8%  Similarity=0.057  Sum_probs=138.6

Q ss_pred             cCCceeEEEEccCCCEEEeecC-------CCCeEEEecCCCCeeeeccCc----ccceEEEEEcCCCCeEEEEeCCCcEE
Q 020461            9 HERPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLITGSADQTAK   77 (326)
Q Consensus         9 h~~~i~~~~~s~~~~~l~s~~~-------d~~v~iw~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~l~s~~~d~~i~   77 (326)
                      ........+|+++|+++++...       +++|..|+.+++.........    .+.-..++|.++++.++.+.....|.
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            3344578899999998776433       467888888877654332221    12245799999998888888777788


Q ss_pred             EEEccCCcEEEEEe-cCC----CcceeeeecCCeEEEEEcCcccee--------ceeeeeeeeccCCCCCCCceEEEecc
Q 020461           78 LWNVETGAQLFTFN-FDS----PARSVDFAVGDKLAVITTDPFMEL--------NSAIHVKRIARDPADQGGESVLILKG  144 (326)
Q Consensus        78 ~wd~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (326)
                      ..+.+......... .+.    ..+.+.+.++..+.+.........        ...-.++.+..     .+..... ..
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-----dg~~~~~-~~  169 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----DGQMIQV-DT  169 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----TSCEEEE-EE
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-----cCceeEe-eC
Confidence            88876654322111 111    123345555555544321110000        00001111111     1111111 11


Q ss_pred             CccceeEEEEecCCc-----EEEEeeCCCcEEEEECCCCcccccc---cc-ccCcceeeEEEEEcCCCCeEEEEeCCCeE
Q 020461          145 PQGRINRAVWGPLNR-----TIISAGEDAIVRIWDTETGKLLKES---DK-ETGHKKTITSLAKAADGSHFLTGSLDKSA  215 (326)
Q Consensus       145 ~~~~i~~~~~~~~~~-----~l~s~~~d~~i~~wd~~~~~~~~~~---~~-~~~h~~~v~~v~~s~~~~~l~s~s~dg~i  215 (326)
                      ....-+-++|+|++.     ++++-+..+.|..||+.....+...   .. ...+....-.++++++|+..++....+.|
T Consensus       170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I  249 (314)
T d1pjxa_         170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence            222335678888763     4455567888988887533222211   00 11122345678999999988888888999


Q ss_pred             EEeecCCcceEEEEeec-cceEEEEeCCCCCeeEEecCC
Q 020461          216 KLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       216 ~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~  253 (326)
                      ..||.+.++.+..+..+ ..+.+++|.|+++.++++...
T Consensus       250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence            99999988776666543 567889999988877776443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.87  E-value=7.9e-06  Score=65.98  Aligned_cols=233  Identities=8%  Similarity=-0.013  Sum_probs=137.7

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCC----CcEEEEEccCCcEE
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETGAQL   87 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~   87 (326)
                      .+..++|+++|+++++-..++.|..|+.++++....+.........++++++|+++++...+    +.+...+..++...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            35688999999988888888999999887776665555555667899999999877665432    22334444444433


Q ss_pred             EEEecCC---CcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EE
Q 020461           88 FTFNFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-IS  163 (326)
Q Consensus        88 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s  163 (326)
                      .......   ..+.+.+.++..+.+...... .....-.+..+..     .+..+..+...-...+-++|+|+++.| ++
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~-~~~~~g~v~~~~~-----dg~~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-STNPLGGVYYVSP-----DFRTVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCB-TTBCCEEEEEECT-----TSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccc-cccCcceeEEEec-----ccceeEEEeeccceeeeeeeccccceEEEe
Confidence            3322211   122334444444444322110 0000111122211     111222222223345678999999865 55


Q ss_pred             eeCCCcEEEEECCCC-cccccc----ccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeecc-----
Q 020461          164 AGEDAIVRIWDTETG-KLLKES----DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----  233 (326)
Q Consensus       164 ~~~d~~i~~wd~~~~-~~~~~~----~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----  233 (326)
                      -+..+.|..||+... ......    ............++++++|++.++....+.|..+|. .++.+..+..+.     
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~  273 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGH  273 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTC
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCc
Confidence            567889999997532 221111    001111123567899999998888888999999996 588888776432     


Q ss_pred             --ceEEEEeCCCCCeeEEec
Q 020461          234 --PVNAVTMSPLLDHVVLGG  251 (326)
Q Consensus       234 --~~~~~~~s~~~~~~~~~~  251 (326)
                        .+.++++.+..+.++++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         274 MLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             SCBCCEEEECTTSCEEEEEE
T ss_pred             CceeeeEEEeCCCCEEEEEc
Confidence              356888888777666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.84  E-value=6.3e-07  Score=72.07  Aligned_cols=207  Identities=8%  Similarity=0.001  Sum_probs=121.3

Q ss_pred             eeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeee
Q 020461           44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (326)
Q Consensus        44 ~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (326)
                      .+..+... ..+..++++|||+++++...+++|..||....... .                                  
T Consensus        20 v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~-~----------------------------------   63 (302)
T d2p4oa1          20 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-H----------------------------------   63 (302)
T ss_dssp             EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-E----------------------------------
T ss_pred             EEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE-E----------------------------------
Confidence            34444432 25788999999999998888998877775432110 0                                  


Q ss_pred             eeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCC
Q 020461          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (326)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  203 (326)
                                         ....+.+..++++|+++++++...++.+..|+......................+++.+++
T Consensus        64 -------------------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g  124 (302)
T d2p4oa1          64 -------------------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT  124 (302)
T ss_dssp             -------------------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS
T ss_pred             -------------------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCC
Confidence                               0112346678899999988888888888888865432211111111234557889999999


Q ss_pred             CeEEEEeCCCeEEEeecCCcceEEEEeec-----------cceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEe
Q 020461          204 SHFLTGSLDKSAKLWDARTLELIKTYVTE-----------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF  272 (326)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (326)
                      .++++.+.++.+..+|...+.........           ...+.+.+  +++.++.+...... +..++.....     
T Consensus       125 ~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~-i~~~~~~~~~-----  196 (302)
T d2p4oa1         125 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNTEKML-LLRIPVDSTD-----  196 (302)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEETTTTE-EEEEEBCTTS-----
T ss_pred             CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeecCCCCe-EEeccccccc-----
Confidence            99999899999999988876533222111           12334433  33444444332222 1111111100     


Q ss_pred             ecccceeeeccccccCcceeEEEECCCCceEEeecCCCcEEEeecC
Q 020461          273 FDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD  318 (326)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~~~  318 (326)
                          ..... ...........++|++||.++++...+++|..++-+
T Consensus       197 ----~~~~~-~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         197 ----KPGEP-EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             ----CBCCC-EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             ----ccccc-ccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence                00000 000112335679999999988888888887775443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.9e-05  Score=61.71  Aligned_cols=239  Identities=12%  Similarity=0.035  Sum_probs=124.1

Q ss_pred             CeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC-CC--cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEE
Q 020461           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (326)
Q Consensus        33 ~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (326)
                      .|.|-|.. |.....+..+...+...+|||||+.||=... .+  .+.+.+...+................++++...++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            35555654 3333344455677889999999998865443 33  24455666655544444444445566776655444


Q ss_pred             EEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEeeCCCc--EEEEECCCCcccccccc
Q 020461          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAI--VRIWDTETGKLLKESDK  186 (326)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d~~--i~~wd~~~~~~~~~~~~  186 (326)
                      ...........    .....     ...................+++++..+ ++...++.  |.+.++..+.....   
T Consensus        99 ~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~---  166 (269)
T d2hqsa1          99 FALSKTGSLNL----YVMDL-----ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---  166 (269)
T ss_dssp             EEECTTSSCEE----EEEET-----TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---
T ss_pred             EeeecCCccce----eeccc-----ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee---
Confidence            32211100000    00000     001111122222333445566666644 44444554  44445544432211   


Q ss_pred             ccCcceeeEEEEEcCCCCeEEEEeCCC---eEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecc
Q 020461          187 ETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (326)
Q Consensus       187 ~~~h~~~v~~v~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~  263 (326)
                       ...........++|++..++..+.++   .+.+.+...+.. +............|+|+|+.++......         
T Consensus       167 -~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~---------  235 (269)
T d2hqsa1         167 -TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQG---------  235 (269)
T ss_dssp             -CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEET---------
T ss_pred             -ecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCC---------
Confidence             23445667788999999988776654   345555555443 3333344566788999999887543221         


Q ss_pred             cCceeeeEeecccceeeeccccccCcceeEEEECC
Q 020461          264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (326)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  298 (326)
                        +...++.++...... ..+....+.+...+|||
T Consensus       236 --~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         236 --MGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             --TEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             --CCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence              222334444332222 22334456788889998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.58  E-value=9.8e-06  Score=66.74  Aligned_cols=178  Identities=7%  Similarity=0.055  Sum_probs=98.4

Q ss_pred             ceeEEEEccCCCEEEeecC-CCCeEEEecCC-CCee--eecc--CcccceEEEEEcCCCCeEEEEe-CCCcEEEEEccCC
Q 020461           12 PLTYLKYNKDGDLLFSCAK-DHTPTVWFADN-GERL--GTYR--GHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETG   84 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~-d~~v~iw~~~~-~~~~--~~~~--~h~~~V~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~   84 (326)
                      .+.++.|+|||++++++.. ...|.+|+... +...  ....  ........+.|+|++++++... .+++|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4679999999998887753 45677776543 3322  1111  2233467789999999875555 6889999998765


Q ss_pred             cEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEe
Q 020461           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (326)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  164 (326)
                      +........    ..              +....  .    ......         ....+......+.++|++++++++
T Consensus       226 ~~~~~~~~~----~~--------------~~~~~--~----~~~~~~---------~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         226 THMPVYTHH----SF--------------PLIPP--G----IPDRDP---------ETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             TCCEEEEEE----EE--------------ESSCT--T----CCCBCT---------TTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEee----ee--------------ccccc--c----cccccc---------ccccccCCccceEECCCCCEEEEE
Confidence            432111000    00              00000  0    000000         001122334567899999988765


Q ss_pred             eC-CC-----cEEEEECCCCccccc---cccccCcceeeEEEEEcC-CCCeEEEE-eCCCeEEEeecCC
Q 020461          165 GE-DA-----IVRIWDTETGKLLKE---SDKETGHKKTITSLAKAA-DGSHFLTG-SLDKSAKLWDART  222 (326)
Q Consensus       165 ~~-d~-----~i~~wd~~~~~~~~~---~~~~~~h~~~v~~v~~s~-~~~~l~s~-s~dg~i~iwd~~~  222 (326)
                      .. +.     .|..|++.....+..   +............++++| +|++|+++ ..++.|.+|+++.
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            32 22     366776643221111   111111223456788997 78877666 4679999998754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=0.00011  Score=62.28  Aligned_cols=92  Identities=10%  Similarity=0.077  Sum_probs=58.5

Q ss_pred             EEEccCCCEEEeecCCCCeEEEecCCCCeeeeccC---cccceEEEEEcCCCCeEEEEe---------CCCcEEEEEccC
Q 020461           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG---HNGAVWCCDVSRDSMTLITGS---------ADQTAKLWNVET   83 (326)
Q Consensus        16 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~   83 (326)
                      ..|.+++.++. -..+|.+.+|++++++....+..   ..-.+....||||+++++...         ..+...++|+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            46788887665 45678999999988865333322   223566778999999876653         346678889988


Q ss_pred             CcEEEEEecC---CCcceeeeecCCeEE
Q 020461           84 GAQLFTFNFD---SPARSVDFAVGDKLA  108 (326)
Q Consensus        84 ~~~~~~~~~~---~~~~~~~~~~~~~~~  108 (326)
                      ++........   .......|+|+++.+
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~i  128 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQL  128 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCE
T ss_pred             CceeeccCccCCccccceeeeccCCceE
Confidence            7654332221   223345677755433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.48  E-value=1.8e-05  Score=62.46  Aligned_cols=160  Identities=15%  Similarity=0.132  Sum_probs=105.7

Q ss_pred             CceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeec--cCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEE
Q 020461           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (326)
Q Consensus        11 ~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~   88 (326)
                      .....+++.++|+++++....+.+.+++. +++.+..+  ..+......+++.++++.+++....+.|++||... +.+.
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~  191 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLR  191 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEE
T ss_pred             cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ceee
Confidence            34567888888988888777777777764 55666555  33455677888888888888877888888888643 3222


Q ss_pred             EEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEee-CC
Q 020461           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED  167 (326)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d  167 (326)
                      .+..                                                  .+.......++++|+++.+++-. .+
T Consensus       192 ~~g~--------------------------------------------------~g~~~~P~giavD~~G~i~Vad~~~~  221 (279)
T d1q7fa_         192 QIGG--------------------------------------------------EGITNYPIGVGINSNGEILIADNHNN  221 (279)
T ss_dssp             EESC--------------------------------------------------TTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             eecc--------------------------------------------------cccccCCcccccccCCeEEEEECCCC
Confidence            1100                                                  01122345577888888666643 45


Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcce
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (326)
                      +.|.+++. +++.+..+... ........+++.++|.++ .++.++.|++|..++..+
T Consensus       222 ~~v~~f~~-~G~~~~~~~~~-~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         222 FNLTIFTQ-DGQLISALESK-VKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEECT-TSCEEEEEEES-SCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCCC
T ss_pred             cEEEEECC-CCCEEEEEeCC-CCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeecC
Confidence            57999985 46655544221 222356789999999754 456789999999876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.44  E-value=2.4e-05  Score=60.99  Aligned_cols=178  Identities=8%  Similarity=-0.011  Sum_probs=109.6

Q ss_pred             ceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEe
Q 020461           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~   91 (326)
                      ....++++++++++++...++.+++++..++..+....+ ......+++.+++++.++-.....+..++........ . 
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~-  134 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-L-  134 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-C-
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeee-e-
Confidence            346789999999988888888887776555555444333 2345788888887765544444434443332211100 0 


Q ss_pred             cCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEEEeeCCCcEE
Q 020461           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (326)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~i~  171 (326)
                                                                        ..........++++|++..+++...++.|.
T Consensus       135 --------------------------------------------------~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~  164 (260)
T d1rwia_         135 --------------------------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVV  164 (260)
T ss_dssp             --------------------------------------------------CCCSCCSCCEEEECTTCCEEEEEGGGTEEE
T ss_pred             --------------------------------------------------eecccCCcceeeecCCCCEeeecccccccc
Confidence                                                              000011234567888888888888888899


Q ss_pred             EEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe--eccceEEEEeCCCCCe
Q 020461          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDH  246 (326)
Q Consensus       172 ~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~  246 (326)
                      .+|........ ..  .........++++++|.++++....+.|..++...... ..+.  .-..+..+++++++..
T Consensus       165 ~~d~~~~~~~~-~~--~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         165 KLEAESNNQVV-LP--FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTV  237 (260)
T ss_dssp             EECTTTCCEEE-CC--CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCE
T ss_pred             ccccccceeee-ee--ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCE
Confidence            99976543222 11  12234467899999998888888888888888754432 1111  1134678888887754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.28  E-value=0.00022  Score=57.04  Aligned_cols=201  Identities=11%  Similarity=0.068  Sum_probs=106.4

Q ss_pred             eeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeeccCccc----ceEEEEEcCCCCeEEEEeCC-------------Cc
Q 020461           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWCCDVSRDSMTLITGSAD-------------QT   75 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~----~V~~~~~~~~~~~l~s~~~d-------------~~   75 (326)
                      ...+.|++++++|+.+...+.+...+...+..........+    ..+.+++.++|++.++-...             ..
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            35799999999888777766777788655433222111111    24678999999877764321             11


Q ss_pred             EEEEEcc-CCcEEEEEecCCCcceeeeecCC-----eEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEecc-Cccc
Q 020461           76 AKLWNVE-TGAQLFTFNFDSPARSVDFAVGD-----KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGR  148 (326)
Q Consensus        76 i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  148 (326)
                      =++|-+. .++.......-...+.+.+.+..     .+.+.... ..    .+....+..+......+....+.+ ....
T Consensus       153 G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~-~~----~i~~~d~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T d1pjxa_         153 GSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-TK----KLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT-TT----EEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             ceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec-cc----ceEEeeccCccccceeeEEEEcccccccc
Confidence            1333332 22322222111122344454432     12222111 00    111111110000000001111111 1223


Q ss_pred             eeEEEEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCC-eEEEEeCCCeEEEeecC
Q 020461          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       149 i~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~s~dg~i~iwd~~  221 (326)
                      ...+++.++|+..++....+.|.+||...++....+.   ......++++|.++++ .++|.+.++.|...++.
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~---~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE---CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            4568899999988888888999999988776554332   1234578999999987 55677778888777754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.25  E-value=0.0002  Score=55.76  Aligned_cols=52  Identities=13%  Similarity=0.044  Sum_probs=38.6

Q ss_pred             EEccC--CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE
Q 020461           17 KYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG   70 (326)
Q Consensus        17 ~~s~~--~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~   70 (326)
                      ..|||  |+.+|-.+. +.|.+.++.+++.. .+..+.+.+...+|||||+.|+-.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEE
Confidence            34788  998776544 45777799888764 455567778899999999987644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.00  E-value=0.00046  Score=53.60  Aligned_cols=69  Identities=12%  Similarity=0.036  Sum_probs=45.3

Q ss_pred             ceeeeecCCceeEEEEccCCCEEEeecC----C--CCeEEEecCCCCeeeecc------CcccceEEEEEcCCCCeEEEE
Q 020461            3 PILMKGHERPLTYLKYNKDGDLLFSCAK----D--HTPTVWFADNGERLGTYR------GHNGAVWCCDVSRDSMTLITG   70 (326)
Q Consensus         3 ~~~~~~h~~~i~~~~~s~~~~~l~s~~~----d--~~v~iw~~~~~~~~~~~~------~h~~~V~~~~~~~~~~~l~s~   70 (326)
                      ++.|..+.......+|||||+.||-...    +  ..+.+++..+++......      ..........|+|+++.++..
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            4556667777889999999998885432    2  236666777776543221      112345678899999987764


Q ss_pred             e
Q 020461           71 S   71 (326)
Q Consensus        71 ~   71 (326)
                      .
T Consensus       113 ~  113 (281)
T d1k32a2         113 D  113 (281)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.99  E-value=0.0022  Score=51.07  Aligned_cols=206  Identities=9%  Similarity=-0.022  Sum_probs=108.7

Q ss_pred             cceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCC
Q 020461           53 GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA  132 (326)
Q Consensus        53 ~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (326)
                      ..+..++|.++|++.++-...+.|..||.++++....+                                          
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~------------------------------------------   77 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------------------   77 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE------------------------------------------
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE------------------------------------------
Confidence            34578899888886666667777777776654332111                                          


Q ss_pred             CCCCceEEEeccCccceeEEEEecCCcEEEEeeC----CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEE
Q 020461          133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGE----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT  208 (326)
Q Consensus       133 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s  208 (326)
                                .........++++++|+++++...    .+.+...+............ ..-......+.++++|.+.++
T Consensus        78 ----------~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~nd~~~d~~G~l~vt  146 (319)
T d2dg1a1          78 ----------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFT  146 (319)
T ss_dssp             ----------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEE
T ss_pred             ----------eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC-CCcccCCcceeEEeccceeec
Confidence                      011123445778888876665433    22344444444332221111 111234677889999986666


Q ss_pred             EeC------CCeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeec
Q 020461          209 GSL------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG  282 (326)
Q Consensus       209 ~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  282 (326)
                      ...      .+.+..++............-...+.++++|+++.++++-..... +..+|............   .....
T Consensus       147 d~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~-I~~~d~~~~g~~~~~~~---~~~~~  222 (319)
T d2dg1a1         147 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFG---ATIPY  222 (319)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEE---EEEEE
T ss_pred             ccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCc-eEEEEEcCCCceecccc---ceeee
Confidence            432      233555555543332222333467899999999887766432221 22222111000000000   00001


Q ss_pred             cccccCcceeEEEECCCCceEEeecCCCcEEEee
Q 020461          283 GVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHH  316 (326)
Q Consensus       283 ~~~~h~~~v~~v~~s~d~~~lat~s~Dg~i~l~~  316 (326)
                      ...+. ..--.|++.++|++.++....+.|.+|+
T Consensus       223 ~~~~~-~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         223 YFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             ECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             ccCCc-cceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            11111 2245799999999888888888888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.5e-05  Score=65.48  Aligned_cols=159  Identities=13%  Similarity=0.063  Sum_probs=89.2

Q ss_pred             EEecCCcEEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEe---------CCCeEEEeecCCc
Q 020461          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---------LDKSAKLWDARTL  223 (326)
Q Consensus       153 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s---------~dg~i~iwd~~~~  223 (326)
                      .|.+++.++. -..+|.|.+||+.+++....+....-....+....+|||+++++...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            3666665443 45677899999987765322222222334567788999999987663         3577899999987


Q ss_pred             ceEEEEee---ccceEEEEeCCCCCeeEEecCCCcceeEeecccCceeeeEeecccceeeeccccccC---------cce
Q 020461          224 ELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF---------GPI  291 (326)
Q Consensus       224 ~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v  291 (326)
                      +...-...   ...+....|||+++.++.....+   +...+...+. .+++-..  +.+-..+.|..         +.-
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~n---l~~~~~~~~~-~~~lt~~--g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENN---IYYCAHVGKQ-AIRVVST--GKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTE---EEEESSSSSC-CEEEECC--CBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEecce---EEEEecCCCc-eEEEecc--cCcceeeccccchhhhhhhcccc
Confidence            75432211   23455678999999887654322   2222222111 1111110  00000001111         112


Q ss_pred             eEEEECCCCceEEeecC-CCcEEEeecC
Q 020461          292 NALAFNPDGKSFSSGGE-DGYVRLHHFD  318 (326)
Q Consensus       292 ~~v~~s~d~~~lat~s~-Dg~i~l~~~~  318 (326)
                      ..+.|||||++||.... +..|..+.+.
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             ceEEECCCCCeEEEEEecccccceeecc
Confidence            56889999999998764 4556665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.74  E-value=0.0057  Score=47.98  Aligned_cols=225  Identities=14%  Similarity=0.052  Sum_probs=130.8

Q ss_pred             eEEEEccC-CCEEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEec
Q 020461           14 TYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (326)
Q Consensus        14 ~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~   92 (326)
                      ..-.|++. +.++.+=-..+.|..|+.++++.. .+. ....+.++++.+++++++ ++.++ +.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~v-a~~~g-l~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLI-ASDDG-LFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEE-EETTE-EEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEE-EEeCc-cEEeecccceeeEEeee
Confidence            45567764 555555556788888998887543 222 244678888888887665 45554 78899998876544433


Q ss_pred             CCC-----cceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE-EEeeC
Q 020461           93 DSP-----ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGE  166 (326)
Q Consensus        93 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~  166 (326)
                      ...     .+...+.+...+.+....... ......+.++.      .+. ...+.......+.+.|+++++.+ ++-+.
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~-~~~~g~l~~~~------~g~-~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKA-ETGAGSIYHVA------KGK-VTKLFADISIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTC-CTTCEEEEEEE------TTE-EEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccc-cccceeEeeec------CCc-EEEEeeccCCcceeeecCCCceEEEeecc
Confidence            221     122333344444433211000 00001111111      111 11122222345678899998855 45666


Q ss_pred             CCcEEEEECCCCccc--c---ccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeec-cceEEEEe
Q 020461          167 DAIVRIWDTETGKLL--K---ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTM  240 (326)
Q Consensus       167 d~~i~~wd~~~~~~~--~---~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~  240 (326)
                      .+.|..+++......  .   .+....+.....-.++++++|.+.++.-..+.|..||. .++.+..+..+ ..+.+++|
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEE
Confidence            888988887422111  1   01111223345778899999987777777889999997 57788887654 46888888


Q ss_pred             C-CCCCeeEEec
Q 020461          241 S-PLLDHVVLGG  251 (326)
Q Consensus       241 s-~~~~~~~~~~  251 (326)
                      - ++.+.++++.
T Consensus       248 GG~d~~~LyvTt  259 (295)
T d2ghsa1         248 IGPDASRLLVTS  259 (295)
T ss_dssp             ESTTSCEEEEEE
T ss_pred             eCCCCCEEEEEE
Confidence            5 6777777653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.35  E-value=0.005  Score=50.21  Aligned_cols=95  Identities=11%  Similarity=-0.063  Sum_probs=67.3

Q ss_pred             cCCcEEEE-eeCCCcEEEEECCCCccccccccccCcceeeEEEEE--cCCCCeEEEEeCCC------------------e
Q 020461          156 PLNRTIIS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDK------------------S  214 (326)
Q Consensus       156 ~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~--s~~~~~l~s~s~dg------------------~  214 (326)
                      +||++++. -..+.+|.+.|+.+.+....+..  .....+..+..  .|+..|++.++.+.                  .
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~i--Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI--PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEec--CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            46787765 45688999999998876442221  22233454544  45666788777632                  3


Q ss_pred             EEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEecC
Q 020461          215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (326)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  252 (326)
                      +...|..+.+...+.........+.+++++..++++..
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence            67789999998888887778889999999999888653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.05  E-value=0.053  Score=43.66  Aligned_cols=73  Identities=12%  Similarity=0.177  Sum_probs=47.8

Q ss_pred             eeEEEEccCCCEEEeecCCC-----------CeEEEecCCCCeeee--c-cCcccceEEEEEcCCCCeEEEEeCC-CcEE
Q 020461           13 LTYLKYNKDGDLLFSCAKDH-----------TPTVWFADNGERLGT--Y-RGHNGAVWCCDVSRDSMTLITGSAD-QTAK   77 (326)
Q Consensus        13 i~~~~~s~~~~~l~s~~~d~-----------~v~iw~~~~~~~~~~--~-~~h~~~V~~~~~~~~~~~l~s~~~d-~~i~   77 (326)
                      +.......+|++++-|+.+.           .+.+||..++.....  . ..|........+.+++++++.|+.+ .++.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            34445567889888777431           266899998865432  1 1233333455678899988888755 6789


Q ss_pred             EEEccCCc
Q 020461           78 LWNVETGA   85 (326)
Q Consensus        78 ~wd~~~~~   85 (326)
                      +||..+..
T Consensus       102 ~yd~~~~~  109 (387)
T d1k3ia3         102 LYDSSSDS  109 (387)
T ss_dssp             EEEGGGTE
T ss_pred             EecCccCc
Confidence            99987653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.93  E-value=0.056  Score=42.03  Aligned_cols=188  Identities=14%  Similarity=0.067  Sum_probs=107.1

Q ss_pred             CCceeEEEEccCCCEEEeecCCCCeEEEecCCCCeeeecc--Cc--ccceEEEEEcCCCCeEEEEeC----CCcEEEEEc
Q 020461           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GH--NGAVWCCDVSRDSMTLITGSA----DQTAKLWNV   81 (326)
Q Consensus        10 ~~~i~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--~h--~~~V~~~~~~~~~~~l~s~~~----d~~i~~wd~   81 (326)
                      ...+.++++.++|.+++++ .+ -+.++|.++++......  ..  ...++.+.+.|+|++.++...    .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            3457889999999877764 44 47788998887543221  11  224778889999987665432    234467777


Q ss_pred             cCCcEEEEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCc--eEEEeccCccceeEEEEecCCc
Q 020461           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE--SVLILKGPQGRINRAVWGPLNR  159 (326)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~  159 (326)
                      ..++.......-...+.+.++++...+.......    ..+....+........++  ......+..+....++++++|+
T Consensus       136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~----~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKV----NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTT----CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             cCCcEEEEeeccCCcceeeecCCCceEEEeeccc----ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence            6665544433223345566666554333222111    111111111111111111  1223344556677888999998


Q ss_pred             EEEEeeCCCcEEEEECCCCccccccccccCcceeeEEEEEc-CCCCeEE
Q 020461          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFL  207 (326)
Q Consensus       160 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~~~l~  207 (326)
                      +.++.-..+.|..||. +++.+..+...   ...+++++|- +|.+.|.
T Consensus       212 lWva~~~~g~V~~~dp-~G~~~~~i~lP---~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         212 IWNARWGEGAVDRYDT-DGNHIARYEVP---GKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEECS---CSBEEEEEEESTTSCEEE
T ss_pred             EEeeeeCCCceEEecC-CCcEeeEecCC---CCceEEEEEeCCCCCEEE
Confidence            7777777888999995 57766655321   2357888885 4554443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.87  E-value=0.039  Score=47.42  Aligned_cols=76  Identities=17%  Similarity=0.030  Sum_probs=47.5

Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEE--EEeCCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLLD  245 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~s~~~~  245 (326)
                      |.|.-+|+++++..-+...    .....+=..+-.+..+++|+.||.++-+|.++++.+-++..+..+.+  +.+..+++
T Consensus       444 G~l~AiD~~TG~~~W~~~~----~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWE----KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE----SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCC----CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            5688888888876533221    11111111122355777899999999999999999998875543332  44445666


Q ss_pred             ee
Q 020461          246 HV  247 (326)
Q Consensus       246 ~~  247 (326)
                      +.
T Consensus       520 qY  521 (571)
T d2ad6a1         520 QY  521 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.04  E-value=0.27  Score=42.00  Aligned_cols=75  Identities=17%  Similarity=0.068  Sum_probs=45.0

Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceEE--EEeCCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLLD  245 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~s~~~~  245 (326)
                      |.|.-||+.+++.+-.....    .+...=..+-.+..+++|+.||.++.+|.++++.+-++.....+.+  +.+..+++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~----~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCC----CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            35666777766654332211    1111111223566888899999999999999999999875433222  33444565


Q ss_pred             e
Q 020461          246 H  246 (326)
Q Consensus       246 ~  246 (326)
                      +
T Consensus       533 Q  533 (573)
T d1kb0a2         533 Q  533 (573)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.02  E-value=0.24  Score=39.58  Aligned_cols=103  Identities=18%  Similarity=0.229  Sum_probs=62.4

Q ss_pred             EEEEecCCcEEEEeeCCC-----------cEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCC-CeEEEe
Q 020461          151 RAVWGPLNRTIISAGEDA-----------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKLW  218 (326)
Q Consensus       151 ~~~~~~~~~~l~s~~~d~-----------~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~d-g~i~iw  218 (326)
                      ..+...+++.++.|+.+.           .+.+||..+++..........|.......++.++|..++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            344455677777777431           36799998876543211112233333456788999999988765 579999


Q ss_pred             ecCCcceEEEE--eeccceEEEEeCCCCCeeEEecCC
Q 020461          219 DARTLELIKTY--VTERPVNAVTMSPLLDHVVLGGGQ  253 (326)
Q Consensus       219 d~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~  253 (326)
                      |..+..-...-  .........+..+++..+++++..
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             cCccCcccccccccccccccceeeecCCceeeecccc
Confidence            99876543211  112234466777777777766543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.72  E-value=0.35  Score=41.17  Aligned_cols=75  Identities=11%  Similarity=0.106  Sum_probs=47.3

Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceE--EEEeCCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPLLD  245 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~s~~~~  245 (326)
                      |.|.-||+.+++..-.....    ....+-.+.-.+.++++|+.||.++-+|.++++.+-++.....+.  -+.+..+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~----~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCC----CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            56778888888765433211    111111223345678889999999999999999999887543322  233445565


Q ss_pred             e
Q 020461          246 H  246 (326)
Q Consensus       246 ~  246 (326)
                      +
T Consensus       514 q  514 (560)
T d1kv9a2         514 Q  514 (560)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.36  E-value=0.47  Score=37.42  Aligned_cols=59  Identities=10%  Similarity=0.223  Sum_probs=37.4

Q ss_pred             eeeEEEEEcCCCCeEEE-EeCCCeEEEeecCCcceEEE---EeeccceEEEEeCCCCCeeEEe
Q 020461          192 KTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKT---YVTERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       192 ~~v~~v~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~  250 (326)
                      .....++++||+++|+. -+..+.|+.|++.....+..   ...+..+..+.+.+....+.++
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            34678999999987655 45678899998875432222   2234456677776654444444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.96  E-value=0.92  Score=38.64  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=49.9

Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceE--EEEeCCCC
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPLL  244 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~s~~~  244 (326)
                      .|.|.-+|+.+++..-+...    ..++..-..+..+..+++|+.||.++-+|.++|+.+-++..+..+.  -+.+..++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~----~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKE----HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE----SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CCeEEEEcCCCCcEEeecCC----CCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            46788888888876543321    1122222233456678889999999999999999999987554322  24455666


Q ss_pred             Ce
Q 020461          245 DH  246 (326)
Q Consensus       245 ~~  246 (326)
                      .+
T Consensus       541 ~q  542 (582)
T d1flga_         541 EQ  542 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.62  E-value=1.2  Score=38.15  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=47.7

Q ss_pred             CcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEeeccceE--EEEeCCCCC
Q 020461          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPLLD  245 (326)
Q Consensus       168 ~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~s~~~~  245 (326)
                      |.|.-||+.+++..-...    +......=.++..+.+++.|+.||.++-+|.++++.+-++.....+.  -+.+..+++
T Consensus       453 G~l~A~D~~TG~~~W~~~----~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM----ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE----ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccC----CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence            578888888887643321    11112221223346678889999999999999999999987543221  233444666


Q ss_pred             e
Q 020461          246 H  246 (326)
Q Consensus       246 ~  246 (326)
                      +
T Consensus       529 Q  529 (596)
T d1w6sa_         529 Q  529 (596)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.54  E-value=0.92  Score=36.69  Aligned_cols=206  Identities=13%  Similarity=0.056  Sum_probs=111.2

Q ss_pred             EEEEc---cCCCEEEeec-CCCCeEEEecCCCCeeeeccCc-ccceEEEEEc--CCCCeEEEEeCCC-------------
Q 020461           15 YLKYN---KDGDLLFSCA-KDHTPTVWFADNGERLGTYRGH-NGAVWCCDVS--RDSMTLITGSADQ-------------   74 (326)
Q Consensus        15 ~~~~s---~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~h-~~~V~~~~~~--~~~~~l~s~~~d~-------------   74 (326)
                      .++|.   +||++|+... .+..|-+-|+++.++.....-- ...+..+...  |+..+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            45555   4899877655 6788888899988875533221 2234555544  4455777766643             


Q ss_pred             -----cEEEEEccCCcEEEEEecCCCcceeeeecCCeEEEEEcCcc---c---eece----eeeeeeecc----------
Q 020461           75 -----TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF---M---ELNS----AIHVKRIAR----------  129 (326)
Q Consensus        75 -----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~----~~~~~~~~~----------  129 (326)
                           ++.+.|..+++.............+.++++.+.+++.....   .   ....    .+.+....+          
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                 24567888887776665555555666777666665543210   0   0000    000000000          


Q ss_pred             ---------CCCC-CCCceEEEeccCccceeEEEEecCCcEEE-EeeCCCcEEEEECCCCcccc--------ccccccCc
Q 020461          130 ---------DPAD-QGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLK--------ESDKETGH  190 (326)
Q Consensus       130 ---------~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~--------~~~~~~~h  190 (326)
                               +... .....+..+... .....+..+|+|++++ ++.-+.++-++|+++-....        .+......
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             EEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                     0000 000111111111 1234578999999876 55669999999986421110        00001111


Q ss_pred             ceeeEEEEEcCCCCeEEEEeCCCeEEEeecC
Q 020461          191 KKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (326)
Q Consensus       191 ~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~  221 (326)
                      .-.....+|+..|.-..|--.|..|--|++.
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecc
Confidence            2234566788888544444579999999985

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.10  E-value=0.75  Score=39.15  Aligned_cols=29  Identities=17%  Similarity=0.264  Sum_probs=24.5

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccc
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESD  185 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  185 (326)
                      .+.+++.|..|+.++.+|.++|+.+-++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            46778889999999999999999876554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.44  E-value=1.1  Score=33.67  Aligned_cols=211  Identities=9%  Similarity=0.001  Sum_probs=115.6

Q ss_pred             eeecCCceeEEEEccCCCEEEee-cCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEE-EEeCCCcEEEEEccC
Q 020461            6 MKGHERPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVET   83 (326)
Q Consensus         6 ~~~h~~~i~~~~~s~~~~~l~s~-~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~d~~i~~wd~~~   83 (326)
                      +..+...+..++|++..+.|+-+ ..++.|+..++..+.....+..-...+..+++..-++.|+ +-...+.|.+.+++.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33344457789999887766654 4567787777766554444443345678888876555555 445667899999876


Q ss_pred             CcEEEEEecC-CCcceeeeecCCeEEEEE-cCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEE
Q 020461           84 GAQLFTFNFD-SPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (326)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  161 (326)
                      .......... .....+.+.+....+... .+..     ...+.+...   +.... .............+++++.++.|
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~-----~~~I~r~~~---dG~~~-~~i~~~~~~~P~glaiD~~~~~l  181 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD-----NPKIETSHM---DGTNR-RILAQDNLGLPNGLTFDAFSSQL  181 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS-----SCEEEEEET---TSCCC-EEEECTTCSCEEEEEEETTTTEE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCC-----CcEEEEecC---CCCCc-eeeeeecccccceEEEeecCcEE
Confidence            6543333221 223444454433332222 1110     001111111   11111 22222333456788998877766


Q ss_pred             EEe-eCCCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEe
Q 020461          162 ISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (326)
Q Consensus       162 ~s~-~~d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (326)
                      +-+ ...+.|...|+..... ..+.....|   ..++++. ++....|-...+.|...|..+++.+..+.
T Consensus       182 Yw~d~~~~~I~~~~~~g~~~-~~v~~~~~~---P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         182 CWVDAGTHRAECLNPAQPGR-RKVLEGLQY---PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEETTTTEEEEEETTEEEE-EEEEECCCS---EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEeCCCCEEEEEECCCCCe-EEEECCCCC---cEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            544 5677898888864432 222221122   3466665 34444555567788888888877665553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.58  E-value=0.76  Score=37.41  Aligned_cols=62  Identities=11%  Similarity=0.101  Sum_probs=43.2

Q ss_pred             CcceeeEEEEEcCCCCeEEEE-eCC----CeEEEeecCCcceEEEEeeccceEEEEeCCCCCeeEEe
Q 020461          189 GHKKTITSLAKAADGSHFLTG-SLD----KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG  250 (326)
Q Consensus       189 ~h~~~v~~v~~s~~~~~l~s~-s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  250 (326)
                      ++.-.+..+++||++++++-+ +.+    ..|++.|+.+++.+...........++|++++..++..
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEE
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEE
Confidence            344455667889999988733 223    36999999999887654433334678899988877654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.89  E-value=2.6  Score=34.08  Aligned_cols=58  Identities=14%  Similarity=0.121  Sum_probs=38.5

Q ss_pred             ceeEEEEccCCCEEEe-----ecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEE
Q 020461           12 PLTYLKYNKDGDLLFS-----CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG   70 (326)
Q Consensus        12 ~i~~~~~s~~~~~l~s-----~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~   70 (326)
                      .+...++|||+++++-     |+....++++|+.+++.+...-. ......+.|.+|++.|+-.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEE
Confidence            3456788999998773     33456788999999987642111 1112467899999876543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.48  E-value=1.9  Score=36.36  Aligned_cols=29  Identities=7%  Similarity=0.212  Sum_probs=24.1

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCccccccc
Q 020461          157 LNRTIISAGEDAIVRIWDTETGKLLKESD  185 (326)
Q Consensus       157 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  185 (326)
                      .+.+++.|+.||.++.+|.++|+.+-+..
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            35677789999999999999999876554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.41  E-value=3.8  Score=30.56  Aligned_cols=165  Identities=11%  Similarity=-0.057  Sum_probs=82.9

Q ss_pred             CceeEEEEccCCC-EEEeecCCCCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeC--CCcEEEEEccCCcEE
Q 020461           11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWNVETGAQL   87 (326)
Q Consensus        11 ~~i~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~   87 (326)
                      ..+..+++.+.+. +..+-...+.|.+.++........+.........++++|...+++-...  .+.|.-.++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            3456778876444 4555556677888887655544444444455667777775544443322  122222222211110


Q ss_pred             EEEecCCCcceeeeecCCeEEEEEcCccceeceeeeeeeeccCCCCCCCceEEEeccCccceeEEEEecCCcEEE-EeeC
Q 020461           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGE  166 (326)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~  166 (326)
                                                                          ......-...+.+++++.++.|+ +-..
T Consensus       157 ----------------------------------------------------~l~~~~~~~p~gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         157 ----------------------------------------------------SLVTENIQWPNGITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             ----------------------------------------------------EEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             ----------------------------------------------------cccccccceeeEEEeeccccEEEEecCC
Confidence                                                                00011112345566777665554 3355


Q ss_pred             CCcEEEEECCCCccccccccccCcceeeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEE
Q 020461          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (326)
Q Consensus       167 d~~i~~wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (326)
                      .+.|...|+..... ..+...........++++.. +....+-..++.|.-.+..+++....+
T Consensus       185 ~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         185 LHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             TTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             cCEEEEEECCCCCE-EEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEEEECCCCcceEEE
Confidence            67788888754322 22211111223345666663 334445456677777777666554443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.52  E-value=1  Score=38.32  Aligned_cols=63  Identities=17%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             CCeEEEecCCCCeeeeccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCC
Q 020461           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP   95 (326)
Q Consensus        32 ~~v~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~   95 (326)
                      |.+.=+|+.+|+.+=..+.+. +++.-.++..+.++++|+.|+.++.+|.++|+.+..++....
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~  528 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC
Confidence            344445666666543333221 222212234567888899999999999999999998876544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.29  E-value=5.6  Score=30.30  Aligned_cols=78  Identities=8%  Similarity=0.110  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCCCeee--eccCcccceEEEEEcCCCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcceeeeecCCeEE
Q 020461           31 DHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (326)
Q Consensus        31 d~~v~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (326)
                      ...|.|-|+.++..+.  .+.+ .    +.-.+|..+.++.-+ ..+++++|+++.+.+..+.++.++..-.|...+.+.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~A-d----sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~  117 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA  117 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECCC-S----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEE
T ss_pred             CceEEEEECCCCCcceecccch-h----hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEE
Confidence            3466667776554321  1111 1    223578777777666 458999999999999999998888888888888777


Q ss_pred             EEEcCc
Q 020461          109 VITTDP  114 (326)
Q Consensus       109 ~~~~~~  114 (326)
                      .+....
T Consensus       118 lVT~ta  123 (327)
T d1utca2         118 LVTDNA  123 (327)
T ss_dssp             EECSSE
T ss_pred             EEcCCc
Confidence            766543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.11  E-value=2.1  Score=36.18  Aligned_cols=44  Identities=16%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             CCCeEEEEeCCCcEEEEEccCCcEEEEEecCCCcce--eeeecCCe
Q 020461           63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS--VDFAVGDK  106 (326)
Q Consensus        63 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~  106 (326)
                      .+.+++.++.|+.++.+|.++|+.+..+........  +.+..+.+
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            456788899999999999999999988876544332  34443443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.69  E-value=13  Score=30.08  Aligned_cols=51  Identities=10%  Similarity=0.066  Sum_probs=35.6

Q ss_pred             eeEEEEEcCCCCeEEEEeCCCeEEEeecCCcceEEEEee---------ccceEEEEeCCC
Q 020461          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---------ERPVNAVTMSPL  243 (326)
Q Consensus       193 ~v~~v~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~s~~  243 (326)
                      ..+++++.||+..+++--.+|.|++++.++++.......         +.-...++++|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            467999999998888775679999999877654332211         122357888875