Citrus Sinensis ID: 020462

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSRTKVIDCSKSPSLFINKMIDFQFNININ
Secondary Structure (PSIPRED)
ccHHHHHHHccHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHcHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHHHHHHHHHccHHHHHcccccccHHHHHHHcccHHHHHHHHHccccHHHHHcccccccccHHHHHHHcccHHHHHHHHHcccccHcccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEHcccHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHEEEEEEEEcc
Coil and Loop (DISEMBL)
MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGnllennplVRSLIIegdvkgntplhvlaavrpdefDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDvgrgqysdgvirgpkylvgqnddtkddykdtRASHLVVAALIATVAFAAAftipggyrsengtAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSrtkvidcskspslFINKMIDFQFNININ
Flexible Loop (DISEMBL)
mtalhlaadrgyvGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQAnfdavnkqnvSVTNILLNGYPELKEEIQKLSkdvgrgqysdgvirgpkylvgqndDTKDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSRTKVIDCSKSPSLFINKMIDFQFNININ
Low Complexity Region (SEG)
MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVeelgnllennPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHlvvaaliatvafaaaftiPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSRTKVIDCSKSPSLFINKMIDFQFNININ
Disordered region (IsUnstruct)
***LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQN*****DYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSRTKVIDCSKSPSLFINKMIDFQFNIN**
Disordered Region (DISOPRED)
MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSR**************NKMIDFQFNININ
Disordered Region (DISEMBL)
MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSRTKVIDCSKSPSLFINKMIDFQFNININ
Disordered Region (DISPRO)
MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSD*************DDTKDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSR******SKSPSLFINKMIDFQFNININ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSRTKVIDCSKSPSLFINKMIDFQFNININ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.901	0.498	0.259	5e-12
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.938	0.583	0.266	4e-11
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.702	0.430	0.258	1e-08

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 160/351 (45%), Gaps = 57/351 (16%)

Query: 3   ALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRS 62
           ALHLAA +G+V ++KA++SK+ +    +D +G   LH A+     E +  LL+ +P   +
Sbjct: 235 ALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADP---A 291

Query: 63  LIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEE 122
           ++++ D   NT LHV    +  E    ++     N + + + + +  +I   G P L EE
Sbjct: 292 IVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDI-AEGLP-LSEE 349

Query: 123 IQKLSKDVGR-GQYSDGVIRGP----KYLVGQ---------------NDDTKDDYKDTRA 162
              + + + R G      +  P    +  V Q               N +  +  K+ R 
Sbjct: 350 SSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRK 409

Query: 163 SH-----------LVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIA 211
            H            VVA L ATVAFAA FT+PGG  + +G+A++    +F+ F + +++A
Sbjct: 410 LHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALA 468

Query: 212 MVFSLSAVFTHF-LMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTF------- 263
           +  SL+ V     L+  + +A K   E +    +W  L SM    +AF+  ++       
Sbjct: 469 LFTSLAVVVVQITLVRGETKAEKRVVEVINKL-MW--LASM-CTSVAFLASSYIVVGRKN 524

Query: 264 ---AMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLS-RTKVIDCSKSPS 310
              A LV  +G  I+  ++G     + ++++K     S R KV    +S S
Sbjct: 525 EWAAELVTVVGGVIMAGVLGT----MTYYVVKSKRTRSMRKKVKSARRSGS 571

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 148/364 (40%), Gaps = 58/364 (15%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           TALH AA  G+  IVK +I K       VD +G   LH A+     E +  L+E +    
Sbjct: 161 TALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG--- 217

Query: 62  SLIIEGDVKGNTPLHVLAAVRPDEFDV--RMIRKMQANFDAVNKQNVSVTNIL-LNGYPE 118
           SLI   D KGNTPLH+  AVR +  ++   +++  + +  AVNK   +  +I    G  E
Sbjct: 218 SLINSADNKGNTPLHI--AVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHE 275

Query: 119 LKEEIQKLSKDVGRG------QYSDGVIRGPKYLVG--------QNDDTKDDYKDTRA-- 162
           +   +QK+     R           G  R  K  V         Q + T    ++ +   
Sbjct: 276 IVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIA 335

Query: 163 ----------------SHLVVAALIATVAFAAAFTIPGGYRSEN---------GTAILRR 197
                           S  +VA LIATVAFAA F +PG Y  +          G A    
Sbjct: 336 KRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAP 395

Query: 198 NTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIA 257
              F  F+V DS A+  SL+ V     + +     K    A+    +W     +    +A
Sbjct: 396 RPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMIS---VA 452

Query: 258 FVTGTFAMLVP-----SLGLAIITCLIGLSFF-FLAFWLIKLSIFLSRTKVIDCSKSPSL 311
           FV+ +F ++       ++G+  I  LI +S    + +W+I   I  S++        P L
Sbjct: 453 FVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYWVIANRIEGSKSSPASMMSDPEL 512

Query: 312 FINK 315
             +K
Sbjct: 513 ADSK 516

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 38/267 (14%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           T+LH A   G + IVKA+I K+     + D +G   LH A+    +E +  +L+ +    
Sbjct: 164 TSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADY--- 220

Query: 62  SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLN-GYPELK 120
           +++ E D KGNT LH+       +    ++       +A+N Q  +  ++     Y E  
Sbjct: 221 TILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESA 280

Query: 121 EEIQ--------KLSKDVGRGQYSDGVIRGP---KYLVG----QNDDT------------ 153
            EI         K  + +GR   +  + R     K+ V     QN+ T            
Sbjct: 281 LEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELR 340

Query: 154 ---KDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSEN---GTAILRRNTAFQAFIVA 207
              ++  ++T  S  VVA L A++AF A F +PG Y +E    G A +   T F+ F + 
Sbjct: 341 KLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLL 400

Query: 208 DSIAMVFSLSAVFTHF-LMALKIEATK 233
           ++ ++  SL+ V     L+A    A K
Sbjct: 401 NATSLFISLAVVVVQITLVAWDTRAQK 427

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
224127106	575	predicted protein [Populus trichocarpa]	0.877	0.497	0.444	2e-59
224127102	434	predicted protein [Populus trichocarpa]	0.858	0.645	0.444	7e-59
255585399	575	ankyrin repeat-containing protein, putat	0.849	0.481	0.440	3e-53
224126975	381	predicted protein [Populus trichocarpa]	0.815	0.698	0.408	1e-45
296085927	611	unnamed protein product [Vitis vinifera]	0.886	0.472	0.381	1e-44
255551947	582	ankyrin repeat-containing protein, putat	0.720	0.403	0.398	3e-44
296085925	380	unnamed protein product [Vitis vinifera]	0.874	0.75	0.399	3e-43
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.874	0.447	0.390	4e-42
359478095	720	PREDICTED: ankyrin repeat-containing pro	0.828	0.375	0.387	7e-41
298205141	645	unnamed protein product [Vitis vinifera]	0.776	0.392	0.371	2e-40

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/308 (44%), Positives = 193/308 (62%), Gaps = 22/308 (7%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           TALH+AA +G+V  +K I+S+   C +LVDNRGWN LHYA+ S   +     L+   L R
Sbjct: 267 TALHIAAIQGHVDAMKEIVSRCPACCDLVDNRGWNALHYAVASKDTKVFKECLKIPELAR 326

Query: 62  SLIIEGDVKGNTPLHVLAAVRPDEFDVRMI--------RKMQANFDAVNKQNVSVTNILL 113
            L  E D KGNTP H++AA+  ++ + R +        RK Q     +NK+ +SV +I  
Sbjct: 327 -LQTEKDDKGNTPFHLIAALAHEQPEWRYVLFNDSNGYRKWQ--IYGLNKRKLSVNDIYE 383

Query: 114 NGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIAT 173
             + E+++EI +   D G G              G+N + +D     R SHLVVAALIAT
Sbjct: 384 EDFGEIQKEILESLNDGGSGPLGRRRK---VLRRGRNKEGEDALSKARESHLVVAALIAT 440

Query: 174 VAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMAL----KI 229
           V FAAAFT+PGGY+S+ GTAIL +  AF  F+V+D+++MV S+SAVF HFL++L    ++
Sbjct: 441 VTFAAAFTLPGGYKSDRGTAILAKKAAFIVFVVSDAMSMVLSISAVFIHFLISLIHAFEM 500

Query: 230 EATKDFDEA----LFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFF 285
           E +KD  E     LF  +  FT+  MG M+IAF+TGT+A+L PSLGLAI +CLIGLSFFF
Sbjct: 501 EKSKDISEEAAIKLFGVATLFTMIGMGIMIIAFITGTYAVLEPSLGLAISSCLIGLSFFF 560

Query: 286 LAFWLIKL 293
           + + + ++
Sbjct: 561 IVYLVFRI 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127102|ref|XP_002329396.1| predicted protein [Populus trichocarpa] gi|222870446|gb|EEF07577.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 137/308 (44%), Positives = 186/308 (60%), Gaps = 28/308 (9%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           TALH+AA +G+V  +K I+S+   C ELVDNRGWN LHYA+ +   E     +E   L R
Sbjct: 104 TALHIAAIQGHVNAMKEIVSRRPACCELVDNRGWNALHYAVATKDREVFKECMEIPELAR 163

Query: 62  SLIIEGDVKGNTPLHVLAAVRPDEFDVRMI--------------RKMQANFDAVNKQNVS 107
            L  + D KGNTP H++AA+  ++   R +                 +     +N+Q +S
Sbjct: 164 -LKTKKDDKGNTPFHLIAALAHEKKQWRRVLYKYCYNKRVVCGKSPYKREVCGLNEQKLS 222

Query: 108 VTNILLNGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVV 167
           V +I    + E+++EI K  +DVG     +G +   K L GQN+  K+     R SHLVV
Sbjct: 223 VNDIYEGKFGEIQKEILKSLEDVG-----NGPLGSRKVLKGQNEGEKEALSRARESHLVV 277

Query: 168 AALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMAL 227
           AALIATV FAAAFT+PGGY+++ GTAIL +  AF  F+++D+++MV S+ AVF HFL++L
Sbjct: 278 AALIATVTFAAAFTLPGGYKNDRGTAILAKKAAFIVFVISDAMSMVLSILAVFIHFLISL 337

Query: 228 --KIEATK------DFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLI 279
               E  K      D  E LF  +  FT+  MG M+IAFVTGT+A+L PSL LAI TCLI
Sbjct: 338 IHGFEMVKDKVIDEDTTEILFVVATLFTMIGMGTMIIAFVTGTYAVLEPSLELAISTCLI 397

Query: 280 GLSFFFLA 287
           GLSFF L 
Sbjct: 398 GLSFFVLG 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/295 (44%), Positives = 181/295 (61%), Gaps = 18/295 (6%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           TALHLAA +  +  ++ II K  +C +LVDNRGWN  HYA++S   + L  LL N P   
Sbjct: 281 TALHLAACQANIKSMREIIFKCPDCCKLVDNRGWNVAHYAVISKSDDALKILLAN-PSCI 339

Query: 62  SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKE 121
            L+ E D +GNTPLH+LAA++       ++   + +  AV +QN      LL+  P  K+
Sbjct: 340 YLVNEKDAQGNTPLHLLAALQ--SHPRSLMHHAKGHRFAVYRQNFLCIKELLSRSPCRKK 397

Query: 122 EIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIATVAFAAAFT 181
           EIQ+  +D+G G     VI+         DD    ++  R SH+VVAAL+ATV FAAAFT
Sbjct: 398 EIQEWMRDLGGGPLGQIVIK--------KDDFILTFERARDSHIVVAALVATVTFAAAFT 449

Query: 182 IPGGYRS-----ENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFD 236
           +PGGYRS     + G AIL +N+AF+AF++ D+IAMV S S++F HF +AL     +   
Sbjct: 450 LPGGYRSNDDEKDQGVAILGKNSAFKAFLITDAIAMVLSTSSLFIHFTLAL--HGYRQRF 507

Query: 237 EALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLI 291
             L   +    +F++ AMV+AFVTGT+A+L PS GLAI TC IGLSFF   F+++
Sbjct: 508 MWLMVYAFRCIVFAIEAMVVAFVTGTYAVLSPSQGLAISTCAIGLSFFIFVFFIL 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126975|ref|XP_002329352.1| predicted protein [Populus trichocarpa] gi|222870402|gb|EEF07533.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 169/299 (56%), Gaps = 33/299 (11%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVS----FYVEELGNLLENN 57
           TALHLA  RG V  V+AI++    C ELVDNRGWN LHYA  +    FY  +        
Sbjct: 66  TALHLAVVRGDVAAVRAIMNPCPACCELVDNRGWNVLHYAATTIKGYFYFPQW------I 119

Query: 58  PLVRSLIIEGDVKGNTPLHVLAAV------RPDEFDVRMIRKMQANFDAVNKQNVSVTNI 111
           P    L  E D  GNTPLH+ AA+      R     +   +KM      +NK+N+SV +I
Sbjct: 120 PHFEKLKYEKDNDGNTPLHLYAALGNFPQQRLSSDWIHAYKKMCG----LNKRNLSVDDI 175

Query: 112 LLNGYPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALI 171
           L   +PE K+EI +  KDV  G     +    K  +  ++   +       + ++VAAL+
Sbjct: 176 LGRNFPETKKEILESLKDVRSGPLQRPIAMMKKEYLSISERGME-------TRVLVAALV 228

Query: 172 ATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEA 231
           ATV FAAAFT+PGGY++E G A+L +N AF  F+++D+IAM+ S+SA+F HF  A  I  
Sbjct: 229 ATVTFAAAFTMPGGYKNEQGIAVLLKNAAFVVFVISDAIAMLLSISALFMHFCWA-PIGT 287

Query: 232 TKDFDEALFAASIW---FTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLA 287
               +E +     W    T+ ++ AMVIAF+TG++A+L PS  LAI TC IG +F F A
Sbjct: 288 RGQVEEDM--KGNWTSTLTICAIPAMVIAFITGSYAVLAPSSWLAITTCFIGAAFIFFA 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 185/309 (59%), Gaps = 20/309 (6%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL-- 59
           TALH+AA+R +  IVK ++S + +C E VD++G N LHYA++S      G +L  N L  
Sbjct: 303 TALHIAANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLS 362

Query: 60  VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPE- 118
           VR LI E D KG+TPLH+LA+ +   +D  +    + +  A+NK  ++  +I+     + 
Sbjct: 363 VRRLINEKDAKGDTPLHLLASYQV--YDPFLSADNRVDKMALNKDKLTALDIISRDKVKP 420

Query: 119 ---LKEEIQKLSKD-----VGRGQYSDGVIR---GPKYLVGQNDDTKDDYKDTRASHLVV 167
               KEEI++  ++     VG   + + + +     K    + D++    K    +HL+V
Sbjct: 421 RRIFKEEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSEDVEKDESISTTKREGETHLIV 480

Query: 168 AALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMAL 227
           AAL+ATV FAA FT+PGGY ++NG AIL +  AF+AFIV D++A++ S+SAVF +F M+ 
Sbjct: 481 AALVATVTFAAGFTLPGGY-NDNGMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMS- 538

Query: 228 KIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLA 287
            +   +D+ +       + T+ SMGAMV+AF+TG +A+L  S GL I+TC+I    F LA
Sbjct: 539 -VHEDEDYLDKHLIMGFFLTVLSMGAMVVAFMTGLYAVLPLSSGLPIVTCII-CCIFLLA 596

Query: 288 FWLIKLSIF 296
           F+ +   +F
Sbjct: 597 FYFVFRQLF 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/296 (39%), Positives = 164/296 (55%), Gaps = 61/296 (20%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           TALHLAA RG V I+K IISK  +C E+ D+RGWN LHYA+VS   E L  +L N+ L+ 
Sbjct: 310 TALHLAACRGNVRIMKEIISKCPDCCEIADDRGWNVLHYAVVSKNDEALQVILRNSSLI- 368

Query: 62  SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKE 121
            L+ + D +GNTPLH+LA  RP  +    +   + + +A  KQNV   + L++      E
Sbjct: 369 DLVNDRDAQGNTPLHLLAVSRP--YLPSFVFDGEDDLNAFYKQNVLSRDDLIH------E 420

Query: 122 EIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIATVAFAAAFT 181
            +Q                  PKY   +                              FT
Sbjct: 421 LLQ------------------PKYQQKRQ---------------------------XXFT 435

Query: 182 IPGGYRSE-----NGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFD 236
           +PGGYRS+      GTAIL +++AF+AFI+ D+IAMV S  +VF HF++ L     K + 
Sbjct: 436 LPGGYRSDENDPRQGTAILSKSSAFEAFIITDTIAMVLSTCSVFIHFIVMLLGYQEKYW- 494

Query: 237 EALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIK 292
             L  +++ F +F+MGAMV+AF TGT+A+L PSLGLA+ TC IGLSFF   F+++K
Sbjct: 495 -WLIRSALLFIMFAMGAMVVAFATGTYAVLSPSLGLAVATCFIGLSFFIYVFYMLK 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085925|emb|CBI31366.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/298 (39%), Positives = 180/298 (60%), Gaps = 13/298 (4%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL-- 59
           TALH+AA+R +  IVK ++S + +C E VD++G N LH A++S       ++L +N L  
Sbjct: 22  TALHIAANRNHQDIVKLLLSHSPDCCEQVDDKGNNVLHSAIMSERYHATRHILNDNSLLR 81

Query: 60  VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNIL--LNGYP 117
           VR LI E D KG++PLH+LA+ +   +D  +    + +  A+NK  ++  +I    N  P
Sbjct: 82  VRRLINEKDAKGDSPLHLLASYQ--VYDPSLSEDNRVDKMALNKDKLTALDIFSRANVKP 139

Query: 118 ELK-EEIQ-KLSKDV-GRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIATV 174
               ++I  + SK + G G+     I   + +   +D++    K    +HL+VAAL+ATV
Sbjct: 140 VFYFDQISGRNSKTIEGMGESCCWTISWQEAINKDSDESISTIKRQGETHLIVAALVATV 199

Query: 175 AFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKD 234
            FAA FT+PGGY ++NG AIL +  AF+AFIV D+IA++ S+SAVF +F M+L  +   +
Sbjct: 200 TFAAGFTLPGGY-NDNGMAILTKRAAFKAFIVTDTIAVILSVSAVFVYFFMSLHKDG--E 256

Query: 235 FDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIK 292
           F           TLFSMGAMV+AF+TG +A+L  S GL I+TC+I      LAF+ I+
Sbjct: 257 FLVKHLIMGFLLTLFSMGAMVVAFMTGLYAVLPLSSGLPIVTCII-CCIVLLAFYFIE 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/315 (39%), Positives = 173/315 (54%), Gaps = 30/315 (9%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL-- 59
           TALH+AA+R +  IVK ++S + +C E VD++G N LH A++S      GN+  +N L  
Sbjct: 318 TALHIAANRHHQDIVKRLLSHSPDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLW 377

Query: 60  VRSLIIEGDVKGNTPLHVLAAVR---PDEFDVRMIRKMQAN------FDAVNKQNVSVTN 110
           V  LI E D KG+TPLH+LA+ +   P   +   + KM  N       D +++ NV   N
Sbjct: 378 VTGLINEKDAKGDTPLHLLASYQVYDPFLSENNRVDKMALNKDKLTALDILSRANVKSGN 437

Query: 111 I----LLNGYPE----------LKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDD 156
           I    LL    E           +E I K S   G G   D         VG+ D    +
Sbjct: 438 ISREVLLKQLKEGEKVDVGPFSWQEAINKDSGSTGNGSADDNGSSSKSKDVGE-DKIISN 496

Query: 157 YKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSL 216
                 +HL+VAAL+ATV FAA FT+PGGY S+ G A L +  AF AFIV D+IA+  S+
Sbjct: 497 INRIGETHLIVAALVATVTFAAGFTLPGGYDSD-GMATLTKKAAFIAFIVTDTIAVTLSV 555

Query: 217 SAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIIT 276
           SAVF +F M+L  +  + F E       + T+F +GAM++AF+TG +A+L  S GL I+ 
Sbjct: 556 SAVFVYFFMSLHED--EGFLEKHLFTGFYLTVFGIGAMMVAFMTGLYAVLPLSSGLPIVA 613

Query: 277 CLIGLSFFFLAFWLI 291
           C+I  SFF L F+ +
Sbjct: 614 CII-CSFFLLPFYFV 627

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478095|ref|XP_002274107.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 174/289 (60%), Gaps = 19/289 (6%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL-- 59
           TALH+AA+R +  IVK ++S + +C E VD++G N LHYA++S      G +L  N L  
Sbjct: 318 TALHIAANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLS 377

Query: 60  VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG--YP 117
           VR LI E D KG+TPLH+LA+ +   +D  +    + +  A+NK  ++  +I+      P
Sbjct: 378 VRRLINEKDAKGDTPLHLLASYQV--YDPFLSADNRVDKMALNKDKLTALDIISRDKVKP 435

Query: 118 E--LKEEIQKLSKD-----VGRGQYSDGVIR---GPKYLVGQNDDTKDDYKDTRASHLVV 167
               KEEI++  ++     VG   + + + +     K    + D++    K    +HL+V
Sbjct: 436 RRIFKEEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSEDVEKDESISTTKREGETHLIV 495

Query: 168 AALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMAL 227
           AAL+ATV FAA FT+PGGY ++NG AIL +  AF+AFIV D++A++ S+SAVF +F M+ 
Sbjct: 496 AALVATVTFAAGFTLPGGY-NDNGMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMS- 553

Query: 228 KIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIIT 276
            +   +D+ +       + T+ SMGAMV+AF+TG +A+L  S GL I+T
Sbjct: 554 -VHEDEDYLDKHLIMGFFLTVLSMGAMVVAFMTGLYAVLPLSSGLPIVT 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205141|emb|CBI17200.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 164/296 (55%), Gaps = 43/296 (14%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVS-----FYVEELGNLLEN 56
           TALH+A+   +  IV+ I+S +  C E VD++G N  H+AM+      +Y+    +   N
Sbjct: 361 TALHIASFHHHTKIVEEIVSHSPGCREQVDDKGNNAFHFAMMKKGDDDYYIH---SYFRN 417

Query: 57  NPL-VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG 115
             L  R L+ E D +GNTPLH+L+  +   F  +   K+Q  F+     N S+       
Sbjct: 418 KWLRTRGLVNEKDAQGNTPLHLLSCYQIQRFSEK--GKIQEQFEWAMPGNTSMA------ 469

Query: 116 YPELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIATVA 175
              +++ ++KL K+    +Y +      KY          + +    +HL+V+ALI TV 
Sbjct: 470 ---MEKSMKKLKKETESKEYKE------KYT--------SELRKQGETHLIVSALITTVT 512

Query: 176 FAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDF 235
           FAA FT+PGGY+ ++G AIL +  AF AF+V D+IAMV SL AVF HF M ++    KD 
Sbjct: 513 FAAGFTLPGGYKEDDGKAILSKKAAFGAFVVTDTIAMVSSLCAVFLHFFMTMR----KD- 567

Query: 236 DEALFAASIW---FTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAF 288
           DE L    +W   FT+  MGAM IAF TG + +L  S GL+ ++C++  S FFL+F
Sbjct: 568 DEFLEKHLLWAFIFTMVGMGAMAIAFATGLYVVLPHSSGLSFLSCIL-CSCFFLSF 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.834	0.401	0.281	7.3e-15
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.386	0.240	0.313	1.4e-07
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.889	0.470	0.237	1.4e-06
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.371	0.222	0.272	4.2e-06
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.383	0.205	0.244	3.1e-05
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.383	0.211	0.253	3.6e-05
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.358	0.168	0.268	4.9e-05
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.392	0.193	0.314	8.1e-05
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.352	0.171	0.260	0.00083

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
 Identities = 83/295 (28%), Positives = 120/295 (40%)

Query:     4 LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVS--FYVXXXXXXXXXXPLVR 61
             +H+A   GYV I+KAI+ +  +  EL+D    N LH A  +    V              
Sbjct:   354 IHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKE 413

Query:    62 SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIR-KMQANFDAVNKQNVSVTNILLNGYPELK 120
              LI E D  GNTPLH LA        V M+    + +   +N   V+  +I         
Sbjct:   414 KLINEEDANGNTPLH-LATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEKNMDSSY 472

Query:   121 EEIQKLSKDVGRGQYSDGVIRGPKYL----VGQNDDTKDDYKDTRASHXXXXXXXXXXXX 176
                ++L+        S G  RGPK +    V QN D    YKD   +             
Sbjct:   473 TFFERLT---WMALISAGAPRGPKLILSTPVTQNSDG-GKYKDRVNTLLLVATLVATMTF 528

Query:   177 XXXXXXPGGYRSE--N-GTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATK 233
                   PGGY     N G A L + TAFQ F+V D++AM  S+  +     +AL      
Sbjct:   529 TAGFTLPGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMYCSIITI-----VALIWAQLG 583

Query:   234 DFDEALFAASIWFTLFSMG--AMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFL 286
             D    + A ++   L  +   +M IAF+ GT+A +   L + ++T    L F  L
Sbjct:   584 DLSLIMKAFNLALPLLGLALTSMSIAFMAGTYAAVYGLLIVGVLTSSY-LDFLLL 637

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 42/134 (31%), Positives = 60/134 (44%)

Query:     2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
             TALH AA  G+  IVK +I K       VD +G   LH A+                   
Sbjct:   161 TALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG--- 217

Query:    62 SLIIEGDVKGNTPLHVLAAVRPDEFDV--RMIRKMQANFDAVNKQNVSVTNIL-LNGYPE 118
             SLI   D KGNTPLH+  AVR +  ++   +++  + +  AVNK   +  +I    G  E
Sbjct:   218 SLINSADNKGNTPLHI--AVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHE 275

Query:   119 LKEEIQKLSKDVGR 132
             +   +QK+     R
Sbjct:   276 IVPLLQKIGMQNAR 289

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 73/308 (23%), Positives = 125/308 (40%)

Query:     2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
             T +H+AA  G+V I+K  +    +  EL++N+  N  H A ++                R
Sbjct:   289 TPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEGKR 348

Query:    62 SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQA-NFDAVNKQNVSVTNILLNGYPELK 120
              ++ E D+ GNTPLH LA        V M+      N  A+N +  +  +I         
Sbjct:   349 -MMNEQDINGNTPLH-LATKHRYPIVVNMLTWNDGINLRALNNEGFTALDIAETMKDNNA 406

Query:   121 EEIQKLSKDVGRGQYSDGVIRGPKYL---VGQND-DTKDDYKDTRASHXXXXXXXXXXXX 176
               + K  + +     S G   GP  +   V Q+   + + YKD+  +             
Sbjct:   407 YVLYK--RLIWMALVSAGAPHGPNLIPLTVSQSSKQSPERYKDSVNTLMVTATLVATVTF 464

Query:   177 XXXXXXPGGYRSEN---GTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATK 233
                   PGGY S     G A L     F+ F++ ++IAM  S+  V    + A   +A  
Sbjct:   465 AAGLTLPGGYMSSAPHLGMAALVNKLNFKVFLLLNNIAMCTSVVTVMA-LIWAQLGDAL- 522

Query:   234 DFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLG-LAIITCLIGLSFF-FLAFWLI 291
                +  F  ++   L ++ +M++A V G   ++V  L  L+ +   I  +F  FL   +I
Sbjct:   523 -LTKKAFRLALPLLLTAVVSMMMASVAG-LTLVVSDLPWLSHLVLAIDSAFLVFLMLLII 580

Query:   292 KLSIFLSR 299
               +   +R
Sbjct:   581 PYAFSSTR 588

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 34/125 (27%), Positives = 54/125 (43%)

Query:     2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
             TALH A+  G+V ++KA+++        +D +G   LH A+    V             R
Sbjct:   171 TALHSASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKAD---R 227

Query:    62 SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLN-GYPELK 120
             S I   D KGNT LH+ A     +    ++     +  AVN+   +  +     G PE+ 
Sbjct:   228 SSINIADTKGNTALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVA 287

Query:   121 EEIQK 125
               +QK
Sbjct:   288 LILQK 292

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 32/131 (24%), Positives = 60/131 (45%)

Query:     3 ALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVRS 62
             ALHLAA +G+V IV+ ++ K+ +     D +G   LH A+               P   +
Sbjct:   249 ALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADP---A 305

Query:    63 LIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKE- 121
             +++  D  GNT LH+    +  E    +++    N +A+ + + +  +I   G    +E 
Sbjct:   306 IVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIA-EGLTHSEET 364

Query:   122 -EIQKLSKDVG 131
              EI+++    G
Sbjct:   365 AEIKEILSRCG 375

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
 Identities = 33/130 (25%), Positives = 61/130 (46%)

Query:     3 ALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVRS 62
             ALHLAA +G+V ++KA++SK+ +    +D +G   LH A+               P   +
Sbjct:   235 ALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADP---A 291

Query:    63 LIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEE 122
             ++++ D   NT LHV    +  E    ++     N + + + + +  +I   G P L EE
Sbjct:   292 IVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIA-EGLP-LSEE 349

Query:   123 IQKLSKDVGR 132
                + + + R
Sbjct:   350 SSYIKECLAR 359

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
 Identities = 33/123 (26%), Positives = 57/123 (46%)

Query:   183 PGGYRSEN---GTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEAL 239
             PGG+ S     G A L  N     F+V D +AM  S++ +    L+  ++        +L
Sbjct:   541 PGGFNSSAPHLGRATLATNPTLFIFLVLDILAMQSSVATI--GILIWAQLGDPVLIRSSL 598

Query:   240 FAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFLSR 299
               A +   LF++  M +AF+ G    +     L +I C+I + FF  A +++   + L R
Sbjct:   599 HVA-LPLLLFALLCMPLAFLFGVVTAVGHVKWLVVIICIISVLFFSWAIFVLGPHVMLQR 657

Query:   300 TKV 302
             + V
Sbjct:   658 SYV 660

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
 Identities = 44/140 (31%), Positives = 63/140 (45%)

Query:     2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVXXXXXXXXXXPLVR 61
             TALH AA  G+V +VK++I K+       D +G   LH A+               P V 
Sbjct:   294 TALHSAARMGHVEVVKSLIGKDPSIGFRTDKKGQTALHMAVKG--QNDGIVVELVKPDVA 351

Query:    62 SLIIEGDVKGNTPLHVLAAVRPDEFD-VRMIRKMQA-NFDAVNKQN---VSVTNILLNG- 115
              L +E D KGNTPLH+  A        VR +   +  N + +NK     + V+  + N  
Sbjct:   352 VLSVE-DNKGNTPLHI--ATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAE 408

Query:   116 -YPELKEEIQKLSKDVGRGQ 134
                 LKE     +KD+G+ Q
Sbjct:   409 LVSVLKEAGAATAKDLGKPQ 428

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00083, Sum P(2) = 0.00083
 Identities = 32/123 (26%), Positives = 57/123 (46%)

Query:   183 PGGYRSEN-----GTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDE 237
             PGGY S++     G A L  N     F++ D +AM  S++ + T  L+  ++       +
Sbjct:   513 PGGYISDSKKPNLGRATLATNPTLFIFLLFDILAMQSSVATICT--LIWAQLGDLALILK 570

Query:   238 ALFAASIWFTLFSMGAMVIAFVTGTFAMLVPSLGLAIITCLIGLSFFFLAFWLIKLSIFL 297
             +L  A +   LFS+  M +AF+ G    +     L +   +I   FF  A +++   + L
Sbjct:   571 SLHVA-LPLLLFSLLCMPVAFLFGVITAIAHVKWLLVTISIISGGFFLFAIFILGPHVML 629

Query:   298 SRT 300
              R+
Sbjct:   630 QRS 632

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_120000037 hypothetical protein (575 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.001
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  106 bits (267), Expect = 1e-28
 Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 10/118 (8%)

Query: 154 KDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSEN-----GTAILRRN-TAFQAFIVA 207
            +  + TR S LVVA LIATV FAA FT PGGY  ++     GT IL      F+AF V+
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 208 DSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAM 265
           ++IA V SL AV    L+ +    ++        A +     S+ ++++AF  G++ +
Sbjct: 61  NTIAFVASLVAVI--LLLYIVPSFSR--RLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            T LHLAA  G++ +VK ++    +     DN G   LH A  + ++E +  LLE    V
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 61  RSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQN 105
            +     D  GNTPLH LAA   +   V+++ K  A+ +A +K  
Sbjct: 67  NAR----DKDGNTPLH-LAARNGNLDVVKLLLKHGADVNARDKDG 106

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            T LHLAA  G++ IVK ++ K        D  G   LH A  +  ++ +  LL++    
Sbjct: 41  RTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG--- 96

Query: 61  RSLIIEGDVKGNTPLHV 77
            + +   D  G TPLH+
Sbjct: 97  -ADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
          TALHLAA  G + IVK ++    +     D  G   LH A
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALHLA 68

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLL 54
            T LHLAA  G + +VK ++    +     D  G   LH A  + ++E +  LL
Sbjct: 74  NTPLHLAARNGNLDVVKLLLKHGADVNA-RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
           T LHLAA  G + +V+ ++   ++   L D+ G   L  A
Sbjct: 17 NTPLHLAAKYGALELVQWLLKPGVDLN-LRDSDGLTALDLA 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
PF13962	113	PGG: Domain of unknown function	99.95
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.93
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02791	284	ankyrin-like protein; Provisional	99.86
PHA02791	284	ankyrin-like protein; Provisional	99.86
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.86
PHA02875	413	ankyrin repeat protein; Provisional	99.86
PHA02859	209	ankyrin repeat protein; Provisional	99.86
PHA02875	413	ankyrin repeat protein; Provisional	99.85
PHA02878	477	ankyrin repeat protein; Provisional	99.84
PHA02878	477	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02859	209	ankyrin repeat protein; Provisional	99.83
KOG0510	929	consensus Ankyrin repeat protein [General function	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
PHA02946	446	ankyin-like protein; Provisional	99.82
PHA02874	434	ankyrin repeat protein; Provisional	99.82
PHA02874	434	ankyrin repeat protein; Provisional	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA03100	480	ankyrin repeat protein; Provisional	99.81
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.81
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.81
PHA03095	471	ankyrin-like protein; Provisional	99.81
PHA02795	437	ankyrin-like protein; Provisional	99.8
PHA03100	480	ankyrin repeat protein; Provisional	99.8
KOG0508	615	consensus Ankyrin repeat protein [General function	99.8
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.8
PHA03095	471	ankyrin-like protein; Provisional	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
PHA02876	682	ankyrin repeat protein; Provisional	99.78
PHA02876	682	ankyrin repeat protein; Provisional	99.77
PHA02946	446	ankyin-like protein; Provisional	99.76
KOG0508	615	consensus Ankyrin repeat protein [General function	99.76
PHA02989	494	ankyrin repeat protein; Provisional	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
PHA02795	437	ankyrin-like protein; Provisional	99.75
PHA02798	489	ankyrin-like protein; Provisional	99.75
PHA02743	166	Viral ankyrin protein; Provisional	99.74
PHA02989	494	ankyrin repeat protein; Provisional	99.74
PHA02798	489	ankyrin-like protein; Provisional	99.73
PHA02917	661	ankyrin-like protein; Provisional	99.72
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.72
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.72
PHA02730	672	ankyrin-like protein; Provisional	99.71
PHA02917	661	ankyrin-like protein; Provisional	99.71
KOG0510	929	consensus Ankyrin repeat protein [General function	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.7
KOG0514	452	consensus Ankyrin repeat protein [General function	99.68
PHA02730	672	ankyrin-like protein; Provisional	99.68
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
PHA02736	154	Viral ankyrin protein; Provisional	99.66
PHA02792	631	ankyrin-like protein; Provisional	99.65
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.64
PHA02884	300	ankyrin repeat protein; Provisional	99.64
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.64
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
PHA02741	169	hypothetical protein; Provisional	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.61
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.6
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.6
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.59
PHA02792	631	ankyrin-like protein; Provisional	99.55
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.53
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.53
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.44
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.4
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.4
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.38
KOG0514	452	consensus Ankyrin repeat protein [General function	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.31
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.27
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.24
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.22
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.13
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.94
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.87
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.87
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.86
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.8
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.71
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.66
PF13606	30	Ank_3: Ankyrin repeat	98.61
PF13606	30	Ank_3: Ankyrin repeat	98.58
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.58
KOG0522	560	consensus Ankyrin repeat protein [General function	98.53
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.46
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.45
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.37
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.26
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.25
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.15
KOG0511	516	consensus Ankyrin repeat protein [General function	97.9
KOG2384	223	consensus Major histocompatibility complex protein	97.81
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.77
KOG0511	516	consensus Ankyrin repeat protein [General function	97.73
KOG2384	223	consensus Major histocompatibility complex protein	97.67
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.48
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.16
KOG2505	591	consensus Ankyrin repeat protein [General function	96.7
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.5
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.35
KOG2505	591	consensus Ankyrin repeat protein [General function	95.93
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.45
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.64
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	82.63
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	81.57

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=3.1e-27  Score=184.01  Aligned_cols=109  Identities=39%  Similarity=0.598  Sum_probs=96.2

Q ss_pred             chhHHhhhhhhHHHHHHHHHHHhhhccCCCCcccCC---CceeeeccCc-cchhhHhhhHHHHHHHHHHHHHHHHhhhhh
Q 020462          154 KDDYKDTRASHLVVAALIATVAFAAAFTIPGGYRSE---NGTAILRRNT-AFQAFIVADSIAMVFSLSAVFTHFLMALKI  229 (326)
Q Consensus       154 ~~~~k~~~~s~lvVA~LIATvtF~a~~~~Pgg~~~~---~G~~~l~~~~-~f~~F~~~n~~a~~~S~~~~~~l~~~~~~~  229 (326)
                      +||+++.++++++||+|||||||+|+++||||++|+   .|+|++.+++ .|++|+++|++||++|++++++++ ..+.+
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~-~~~~~   79 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI-SGLDD   79 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhh
Confidence            479999999999999999999999999999999876   5999998877 999999999999999999999976 44422


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 020462          230 EATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAM  265 (326)
Q Consensus       230 ~~~~~~~~~~l~~~~~~~~~s~~~m~~af~~~~~~v  265 (326)
                      .  .+..++.+.++..++++++.+|++||++|+|+|
T Consensus        80 ~--~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   80 F--RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2  345556788999999999999999999999975

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.2e-26  Score=184.65  Aligned_cols=130  Identities=23%  Similarity=0.184  Sum_probs=71.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~-~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      +|||||||..|+.+++++|++. +..+ +..|..||||||+|+..|+.|+|+.|+.+   .|+++|..++.|.|+||+|+
T Consensus        39 Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia~s~g~~evVk~Ll~r---~~advna~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIAASNGNDEVVKELLNR---SGADVNATTNGGQTCLHYAA  114 (226)
T ss_pred             CceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhhhhcCcHHHHHHHhcC---CCCCcceecCCCcceehhhh
Confidence            4556666666666666665532 2222 33455566666666666666666655555   25555655556666666666


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      ..|..+++ ++|+++|+.++++|+.|+||||-|+.-   +..+++++|+..|+....++
T Consensus       115 gK~r~eIa-qlLle~ga~i~~kD~~~qtplHRAAav---Gklkvie~Li~~~a~~n~qD  169 (226)
T KOG4412|consen  115 GKGRLEIA-QLLLEKGALIRIKDKQGQTPLHRAAAV---GKLKVIEYLISQGAPLNTQD  169 (226)
T ss_pred             cCChhhHH-HHHHhcCCCCcccccccCchhHHHHhc---cchhhHHHHHhcCCCCCccc
Confidence            65555555 555566666666666666666655555   33355555555554443333

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.2e-26  Score=183.98  Aligned_cols=126  Identities=27%  Similarity=0.288  Sum_probs=118.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~-~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      |||||+||..|+.|+|+.|+.+ ++|+ +..+..|+|+||+|+..|+.|++++|++.    |+.++.+|..|.||||.|+
T Consensus        73 WtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~----ga~i~~kD~~~qtplHRAA  147 (226)
T KOG4412|consen   73 WTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEK----GALIRIKDKQGQTPLHRAA  147 (226)
T ss_pred             CchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhc----CCCCcccccccCchhHHHH
Confidence            7999999999999999999999 9998 78899999999999999999999999999    9999999999999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ..|..+.+ ++|+..|+.+|..|+.|+||||.|...   ++.+...+|.++|++..
T Consensus       148 avGklkvi-e~Li~~~a~~n~qDk~G~TpL~~al~e---~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  148 AVGKLKVI-EYLISQGAPLNTQDKYGFTPLHHALAE---GHPDVAVLLVRAGADTD  199 (226)
T ss_pred             hccchhhH-HHHHhcCCCCCcccccCccHHHHHHhc---cCchHHHHHHHhcccee
Confidence            99999999 999999999999999999999999666   35577888999998766

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=3.2e-21  Score=160.88  Aligned_cols=126  Identities=16%  Similarity=0.149  Sum_probs=111.8

Q ss_pred             CcHHHHHHHcCcH----HHHHHHHHhCCcccccccCCCccHHHHHHHcCChhH---HHHHHhcCccccccccccC-CCCC
Q 020462            1 MTALHLAADRGYV----GIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEE---LGNLLENNPLVRSLIIEGD-VKGN   72 (326)
Q Consensus         1 ~TpLh~Aa~~G~~----~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~v---v~~Ll~~~~~~g~~in~~d-~~G~   72 (326)
                      ++++|.||+.|+.    +++++|++.++++ +.+|.+|+||||+|+.+|+.+.   +++|++.    |+++|.+| ..|+
T Consensus        21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~----Gadin~~d~~~g~   95 (166)
T PHA02743         21 QNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNM----GADINARELGTGN   95 (166)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            4789999999998    5666777888876 7789999999999999998764   7899998    99999998 5899


Q ss_pred             cHHHHHHhcCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           73 TPLHVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        73 TpLH~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ||||+|+..++.+.+ ++|++ .|++++.+|.+|+||||+|...   +..+++++|++.|++..
T Consensus        96 TpLh~A~~~g~~~iv-~~Ll~~~gad~~~~d~~g~tpL~~A~~~---~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         96 TLLHIAASTKNYELA-EWLCRQLGVNLGAINYQHETAYHIAYKM---RDRRMMEILRANGAVCD  155 (166)
T ss_pred             cHHHHHHHhCCHHHH-HHHHhccCCCccCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCC
Confidence            999999999999998 99985 8999999999999999999998   55689999999987665

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.86  E-value=1.1e-21  Score=185.31  Aligned_cols=125  Identities=18%  Similarity=0.131  Sum_probs=111.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccccc-CCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVD-NRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d-~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      |+|||||.+++++++++|+++|+|+ +..+ .-|.||||+|+++|+..+|++|+++    |++++.+|.+|.||||+|++
T Consensus        80 tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLlqh----GAdpt~~D~~G~~~lHla~~  154 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLLQH----GADPTLKDKQGLTPLHLAAQ  154 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHHHc----CCCCceecCCCCcHHHHHHH
Confidence            7899999999999999999999999 5555 6789999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .++...+ -+|+.+|+|+|.+|++|+|||++|+..+..   ..+..|++-|+...
T Consensus       155 ~~~~~~v-ayll~~~~d~d~~D~~grTpLmwAaykg~~---~~v~~LL~f~a~~~  205 (600)
T KOG0509|consen  155 FGHTALV-AYLLSKGADIDLRDNNGRTPLMWAAYKGFA---LFVRRLLKFGASLL  205 (600)
T ss_pred             hCchHHH-HHHHHhcccCCCcCCCCCCHHHHHHHhccc---HHHHHHHHhccccc
Confidence            9999998 899999999999999999999999998653   33555665554433

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=2.4e-21  Score=162.24  Aligned_cols=123  Identities=18%  Similarity=0.218  Sum_probs=109.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh------CCcccccccCCCccHHHHHHHcCC----hhHHHHHHhcCccccccccccCC-
Q 020462            1 MTALHLAADRGYVGIVKAIISK------NLECYELVDNRGWNFLHYAMVSFY----VEELGNLLENNPLVRSLIIEGDV-   69 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~------~~d~~~~~d~~G~tpLh~A~~~g~----~~vv~~Ll~~~~~~g~~in~~d~-   69 (326)
                      +||||+||+.|+.++++.|++.      ++++ +.+|..|+||||+|+.+|+    .+++++|++.    |+++|.+|. 
T Consensus        22 ~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~----gadin~~~~~   96 (169)
T PHA02741         22 ENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL----GADINAQEML   96 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc----CCCCCCCCcC
Confidence            5899999999999999998653      3555 7789999999999999999    5888999998    999999985 


Q ss_pred             CCCcHHHHHHhcCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           70 KGNTPLHVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        70 ~G~TpLH~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      +|+||||+|+..++.+.+ ++|++ .|++++.+|.+|+|||++|...+   ..++++.|.+.++
T Consensus        97 ~g~TpLh~A~~~~~~~iv-~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~---~~~iv~~L~~~~~  156 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLA-EWLCCQPGIDLHFCNADNKSPFELAIDNE---DVAMMQILREIVA  156 (169)
T ss_pred             CCCCHHHHHHHcCCHHHH-HHHHhCCCCCCCcCCCCCCCHHHHHHHCC---CHHHHHHHHHHHH
Confidence            999999999999999999 99987 69999999999999999999984   5578888877554

>PHA02791 ankyrin-like protein; Provisional

Probab=99.86  E-value=4.4e-21  Score=172.68  Aligned_cols=120  Identities=17%  Similarity=-0.055  Sum_probs=78.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +..  +|+||||+|+..|+.++++.|++.    |+++|.+|.+|+||||+|+.
T Consensus        31 ~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lLL~~----Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         31 HSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFS----GMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            46777777777777777777776665 322  356777777777777777777766    66677777777777777777


Q ss_pred             cCCchHHHHHHhhcccCcccccccCc-CHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNV-SVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~-TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      .|+.+++ ++|+++|++++.+++.|. |||++|+..   +..+++++|++.+
T Consensus       104 ~g~~eiv-k~Ll~~gadin~~~~~g~~TpL~~Aa~~---g~~eivk~LL~~~  151 (284)
T PHA02791        104 SGNMQTV-KLFVKKNWRLMFYGKTGWKTSFYHAVML---NDVSIVSYFLSEI  151 (284)
T ss_pred             cCCHHHH-HHHHHCCCCcCccCCCCCcHHHHHHHHc---CCHHHHHHHHhcC
Confidence            7776666 677777777666666653 666666666   3345566665544

>PHA02791 ankyrin-like protein; Provisional

Probab=99.86  E-value=3e-21  Score=173.77  Aligned_cols=125  Identities=15%  Similarity=0.077  Sum_probs=113.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCC-cHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGN-TPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~-TpLH~Aa   79 (326)
                      +||||+|+..|+.++++.|+++|+++ +.+|..|+||||+|+.+|+.++++.|++.    |+++|.+|..|+ ||||+|+
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~----gadin~~~~~g~~TpL~~Aa  136 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAV  136 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCcCccCCCCCcHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    999999999985 9999999


Q ss_pred             hcCCchHHHHHHhhcccCccccc-ccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVN-KQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n-~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      ..|+.+++ ++|++++.+.  .| ..|.||||+|+..   +..++++.|++.|+++..
T Consensus       137 ~~g~~eiv-k~LL~~~~~~--~d~~~g~TpLh~Aa~~---g~~eiv~lLL~~gAd~n~  188 (284)
T PHA02791        137 MLNDVSIV-SYFLSEIPST--FDLAILLSCIHITIKN---GHVDMMILLLDYMTSTNT  188 (284)
T ss_pred             HcCCHHHH-HHHHhcCCcc--cccccCccHHHHHHHc---CCHHHHHHHHHCCCCCCc
Confidence            99999999 9999987543  23 3589999999999   566999999999988763

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.86  E-value=2.7e-21  Score=182.73  Aligned_cols=123  Identities=24%  Similarity=0.194  Sum_probs=112.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .|||||||++|++.+|+.|+++|+|+ +.+|.+|.||||+|++.|+.-.+-+|+..    ++++|.+|.+|+||||+|+.
T Consensus       113 stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~----~~d~d~~D~~grTpLmwAay  187 (600)
T KOG0509|consen  113 STPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSK----GADIDLRDNNGRTPLMWAAY  187 (600)
T ss_pred             CCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHh----cccCCCcCCCCCCHHHHHHH
Confidence            38999999999999999999999999 88999999999999999999999999999    89999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCccccc-ccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVN-KQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n-~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      +|+...+ +.|+.-|++++..| ++|.||||+|+..++.   ..++++++.|+
T Consensus       188 kg~~~~v-~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~---~~v~Ll~~g~~  236 (600)
T KOG0509|consen  188 KGFALFV-RRLLKFGASLLLTDDNHGNTPLHWAVVGGNL---TAVKLLLEGGA  236 (600)
T ss_pred             hcccHHH-HHHHHhcccccccccccCCchHHHHHhcCCc---ceEehhhhcCC
Confidence            9999876 99999999999998 9999999999999544   55555555444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.86  E-value=4.4e-21  Score=182.77  Aligned_cols=128  Identities=16%  Similarity=0.092  Sum_probs=104.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||.|++.|+.++++.|++.+++..+..+.+|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~----gad~~~~~~~g~tpLh~A~~  144 (413)
T PHA02875         69 ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR----GADPDIPNTDKFSPLHLAVM  144 (413)
T ss_pred             ccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHH
Confidence            36777777777777777777777666555667788888888888888888888888    88888888888899999998


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      .|+.+.+ ++|+++|++++.+|..|.||||+|+..   +..+++++|++.|+++..
T Consensus       145 ~~~~~~v-~~Ll~~g~~~~~~d~~g~TpL~~A~~~---g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        145 MGDIKGI-ELLIDHKACLDIEDCCGCTPLIIAMAK---GDIAICKMLLDSGANIDY  196 (413)
T ss_pred             cCCHHHH-HHHHhcCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCCCc
Confidence            8888888 888888888888888899999988888   456788888888887764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.86  E-value=7.6e-21  Score=164.54  Aligned_cols=126  Identities=17%  Similarity=0.171  Sum_probs=74.8

Q ss_pred             CcHHHHHHHcC--cHHHHHHHHHhCCccccccc-CCCccHHHHHHHc---CChhHHHHHHhcCccccccccccCCCCCcH
Q 020462            1 MTALHLAADRG--YVGIVKAIISKNLECYELVD-NRGWNFLHYAMVS---FYVEELGNLLENNPLVRSLIIEGDVKGNTP   74 (326)
Q Consensus         1 ~TpLh~Aa~~G--~~~iv~~Ll~~~~d~~~~~d-~~G~tpLh~A~~~---g~~~vv~~Ll~~~~~~g~~in~~d~~G~Tp   74 (326)
                      +||||+|+..+  +.++++.|+++|+++ +.+| ..|+||||+|+..   ++.+++++|++.    |+++|.+|.+|.||
T Consensus        52 ~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~----gadin~~d~~G~Tp  126 (209)
T PHA02859         52 ETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDS----GSSITEEDEDGKNL  126 (209)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHC----CCCCCCcCCCCCCH
Confidence            36666666533  566666666666666 3333 3566666665542   345666666666    66666666666666


Q ss_pred             HHHHHh--cCCchHHHHHHhhcccCcccccccCcCHHHhH-hhCCCchHHHHHHHHHHcCCCCC
Q 020462           75 LHVLAA--VRPDEFDVRMIRKMQANFDAVNKQNVSVTNIL-LNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        75 LH~Aa~--~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A-~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ||+|+.  .++.+.+ ++|++.|+|++.+|.+|.||+|.+ ...   ...+++++|++.|+++.
T Consensus       127 Lh~a~~~~~~~~~iv-~~Li~~gadin~~d~~g~t~Lh~~a~~~---~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        127 LHMYMCNFNVRINVI-KLLIDSGVSFLNKDFDNNNILYSYILFH---SDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             HHHHHHhccCCHHHH-HHHHHcCCCcccccCCCCcHHHHHHHhc---CCHHHHHHHHHcCCCCC
Confidence            666654  2345555 666666666666666666666643 333   34466666666665554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.85  E-value=7.6e-21  Score=181.18  Aligned_cols=126  Identities=22%  Similarity=0.254  Sum_probs=119.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++|+++ +.+|..|+||||+|+..|+.++++.|++.    |++++.+|..|+||||+|+.
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~TpL~~A~~  177 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDH----KACLDIEDCCGCTPLIIAMA  177 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhc----CCCCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCc-CHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNV-SVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~-TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+.+ ++|++.|++++..+.+|. ||+++|+..   +..+++++|++.|+++.
T Consensus       178 ~g~~eiv-~~Ll~~ga~~n~~~~~~~~t~l~~A~~~---~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        178 KGDIAIC-KMLLDSGANIDYFGKNGCVAALCYAIEN---NKIDIVRLFIKRGADCN  229 (413)
T ss_pred             cCCHHHH-HHHHhCCCCCCcCCCCCCchHHHHHHHc---CCHHHHHHHHHCCcCcc
Confidence            9999999 999999999999998875 789999998   56699999999998876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.84  E-value=9.1e-21  Score=183.92  Aligned_cols=126  Identities=21%  Similarity=0.222  Sum_probs=115.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|+++|+++ +.+|..|+||||+|+..|+.++++.|++.    |+++|.+|..|+||||+|+.
T Consensus       169 ~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~----ga~in~~d~~g~TpLh~A~~  243 (477)
T PHA02878        169 NTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLEN----GASTDARDKCGNTPLHISVG  243 (477)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999997


Q ss_pred             c-CCchHHHHHHhhcccCcccccc-cCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCC
Q 020462           81 V-RPDEFDVRMIRKMQANFDAVNK-QNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus        81 ~-~~~~~v~~lLl~~g~d~~~~n~-~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      . ++.+.+ ++|+++|++++.++. .|.||||+|..     ..+++++|++.|+++...
T Consensus       244 ~~~~~~iv-~~Ll~~gadvn~~~~~~g~TpLh~A~~-----~~~~v~~Ll~~gadin~~  296 (477)
T PHA02878        244 YCKDYDIL-KLLLEHGVDVNAKSYILGLTALHSSIK-----SERKLKLLLEYGADINSL  296 (477)
T ss_pred             hcCCHHHH-HHHHHcCCCCCccCCCCCCCHHHHHcc-----CHHHHHHHHHCCCCCCCc
Confidence            6 678888 999999999999986 89999999942     347899999999988743

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2e-20  Score=181.49  Aligned_cols=132  Identities=17%  Similarity=0.201  Sum_probs=111.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcC-----------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENN-----------------------   57 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~-----------------------   57 (326)
                      .||||+|++.|+.++++.|+++|+++ +.+|.+|+||||+|+..|+.++++.|++..                       
T Consensus        38 ~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         38 FIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence            38999999999999999999999998 778999999999999887665544443210                       


Q ss_pred             -------------------------------------ccccccccccCCC-CCcHHHHHHhcCCchHHHHHHhhcccCcc
Q 020462           58 -------------------------------------PLVRSLIIEGDVK-GNTPLHVLAAVRPDEFDVRMIRKMQANFD   99 (326)
Q Consensus        58 -------------------------------------~~~g~~in~~d~~-G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~   99 (326)
                                                           ...|+++|.+|.+ |+||||+|+..|+.+.+ ++|+++|++++
T Consensus       117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv-~~Ll~~gad~n  195 (477)
T PHA02878        117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLT-ELLLSYGANVN  195 (477)
T ss_pred             HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHH-HHHHHCCCCCC
Confidence                                                 0037888889888 99999999999999998 99999999999


Q ss_pred             cccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCC
Q 020462          100 AVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus       100 ~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      .+|.+|.||||+|+..   +..++++.|++.|+++...
T Consensus       196 ~~d~~g~tpLh~A~~~---~~~~iv~~Ll~~ga~in~~  230 (477)
T PHA02878        196 IPDKTNNSPLHHAVKH---YNKPIVHILLENGASTDAR  230 (477)
T ss_pred             CcCCCCCCHHHHHHHh---CCHHHHHHHHHcCCCCCCC
Confidence            9999999999999988   5568999999988877643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=1.5e-20  Score=154.96  Aligned_cols=124  Identities=19%  Similarity=0.151  Sum_probs=103.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhC------CcccccccCCCccHHHHHHHcCCh---hHHHHHHhcCccccccccccC-CC
Q 020462            1 MTALHLAADRGYVGIVKAIISKN------LECYELVDNRGWNFLHYAMVSFYV---EELGNLLENNPLVRSLIIEGD-VK   70 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~------~d~~~~~d~~G~tpLh~A~~~g~~---~vv~~Ll~~~~~~g~~in~~d-~~   70 (326)
                      +||||+||+.|+.+  +.+...+      +.....+|.+|+||||+|+..|+.   +++++|++.    |+++|.+| .+
T Consensus        18 ~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~----gadin~~~~~~   91 (154)
T PHA02736         18 ENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW----GADINGKERVF   91 (154)
T ss_pred             CCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc----CCCccccCCCC
Confidence            59999999999843  3222221      112345689999999999999987   468889998    99999998 59


Q ss_pred             CCcHHHHHHhcCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           71 GNTPLHVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        71 G~TpLH~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      |+||||+|+..++.+.+ ++|++ .|++++.+|..|+|||++|...   +..++++.|++.|++.
T Consensus        92 g~T~Lh~A~~~~~~~i~-~~Ll~~~g~d~n~~~~~g~tpL~~A~~~---~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         92 GNTPLHIAVYTQNYELA-TWLCNQPGVNMEILNYAFKTPYYVACER---HDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCcHHHHHHHhCCHHHH-HHHHhCCCCCCccccCCCCCHHHHHHHc---CCHHHHHHHHHcCCCC
Confidence            99999999999999999 99987 5999999999999999999988   5568999999988754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.83  E-value=7.3e-20  Score=158.40  Aligned_cols=125  Identities=14%  Similarity=0.090  Sum_probs=109.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcC--ChhHHHHHHhcCccccccccccC-CCCCcHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSF--YVEELGNLLENNPLVRSLIIEGD-VKGNTPLHV   77 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g--~~~vv~~Ll~~~~~~g~~in~~d-~~G~TpLH~   77 (326)
                      .||||+|++.|+.+.|+.|++..    +..|..|.||||+|+.++  +.+++++|++.    |+++|.+| .+|.||||+
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~----gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIEN----GADVNFKTRDNNLSALHH   93 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHC----CCCCCccCCCCCCCHHHH
Confidence            58999999999999999999763    456899999999999865  88999999999    99999997 489999999


Q ss_pred             HHhc---CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           78 LAAV---RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        78 Aa~~---~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+..   ++.+++ ++|+++|+|+|.+|.+|.||||+|..... ...+++++|++.|+++.
T Consensus        94 a~~~~~~~~~eiv-~~Ll~~gadin~~d~~G~TpLh~a~~~~~-~~~~iv~~Li~~gadin  152 (209)
T PHA02859         94 YLSFNKNVEPEIL-KILIDSGSSITEEDEDGKNLLHMYMCNFN-VRINVIKLLIDSGVSFL  152 (209)
T ss_pred             HHHhCccccHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHhcc-CCHHHHHHHHHcCCCcc
Confidence            8764   367787 99999999999999999999999876421 45789999999998776

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=168.57  Aligned_cols=127  Identities=20%  Similarity=0.201  Sum_probs=116.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .||||+||++|+++.++.|+..|++. +.++.++.||||.|+.+|+.+.++.|++. + .-.++|+.|..|+||||+|++
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~-~-~~rllne~D~~g~tpLHlaa~  350 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQE-S-DTRLLNESDLHGMTPLHLAAK  350 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhC-c-CccccccccccCCCchhhhhh
Confidence            38999999999999999999999998 78899999999999999999999999992 1 257899999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcc---cccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFD---AVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~---~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      .|+.+++ ++|++.|++.+   ..|.+|.||||.|+..   +....+++|+.+|++.
T Consensus       351 ~gH~~v~-qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~---g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  351 SGHDRVV-QLLLNKGALFLNMSEADSDGNTALHLAAKY---GNTSAVQKLISHGADI  403 (929)
T ss_pred             cCHHHHH-HHHHhcChhhhcccccccCCchhhhHHHHh---ccHHHHHHHHHcCCce
Confidence            9999999 99999999888   5699999999999999   5668899999988776

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=8.2e-20  Score=164.70  Aligned_cols=110  Identities=16%  Similarity=0.068  Sum_probs=101.6

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccc----cCCCccHHHHHHHcCChhHHHHHHhcCcccccccccc-CCCCCcHHH
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELV----DNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEG-DVKGNTPLH   76 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~----d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~-d~~G~TpLH   76 (326)
                      +|||.|++.|+.++++.|+++|+|+ +.+    |..|.||||+|+..++.+++++|+++    |+++|.+ +..|+||||
T Consensus        35 ~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~----GADVN~~~~~~g~TpLh  109 (300)
T PHA02884         35 NILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY----GADVNRYAEEAKITPLY  109 (300)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCcCcccCCCCCCHHH
Confidence            5788899999999999999999998 444    46899999999999999999999999    9999986 468999999


Q ss_pred             HHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCC
Q 020462           77 VLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYP  117 (326)
Q Consensus        77 ~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~  117 (326)
                      +|+..++.+.+ ++|++.|+|++.+|.+|.||+++|.+.++
T Consensus       110 ~Aa~~~~~eiv-klLL~~GAdin~kd~~G~TpL~~A~~~~~  149 (300)
T PHA02884        110 ISVLHGCLKCL-EILLSYGADINIQTNDMVTPIELALMICN  149 (300)
T ss_pred             HHHHcCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Confidence            99999999999 99999999999999999999999988643

>PHA02946 ankyin-like protein; Provisional

Probab=99.82  E-value=1e-19  Score=174.57  Aligned_cols=123  Identities=17%  Similarity=0.096  Sum_probs=60.2

Q ss_pred             cHHHHHHH--cCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            2 TALHLAAD--RGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         2 TpLh~Aa~--~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      ++||.++.  .++.++++.|+++|+++ +.+|.+|+||||+|+..|+.++++.|+++    |+++|.+|.+|+||||+|+
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~----GAdin~~d~~g~TpLh~A~  113 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSP-NETDDDGNYPLHIASKINNNRIVAMLLTH----GADPNACDKQHKTPLYYLS  113 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHH
Confidence            34554442  23445555555555554 44455555555555555555555555555    5555555555555555554


Q ss_pred             hcCC--chHHHHHHhhcccCccc-ccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           80 AVRP--DEFDVRMIRKMQANFDA-VNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        80 ~~~~--~~~v~~lLl~~g~d~~~-~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      ..++  .+.+ ++|+++|++++. .|.+|.|||+.| ..   +..++++.|++.|++.
T Consensus       114 ~~~~~~~e~v-~lLl~~Gadin~~~d~~g~tpL~aa-~~---~~~~vv~~Ll~~gad~  166 (446)
T PHA02946        114 GTDDEVIERI-NLLVQYGAKINNSVDEEGCGPLLAC-TD---PSERVFKKIMSIGFEA  166 (446)
T ss_pred             HcCCchHHHH-HHHHHcCCCcccccCCCCCcHHHHH-HC---CChHHHHHHHhccccc
Confidence            4332  2333 555555555553 345555555422 22   2234444444444433

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.4e-19  Score=173.69  Aligned_cols=127  Identities=20%  Similarity=0.152  Sum_probs=110.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcc----------------------cccccCCCccHHHHHHHcCChhHHHHHHhcCc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLEC----------------------YELVDNRGWNFLHYAMVSFYVEELGNLLENNP   58 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~----------------------~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~   58 (326)
                      .||||.|+..|+.++++.|+++|++.                      .+.+|..|+||||+|+..|+.+++++|++.  
T Consensus        69 ~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~--  146 (434)
T PHA02874         69 PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY--  146 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC--
Confidence            37888888888888888888776542                      145688899999999999999999999998  


Q ss_pred             cccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           59 LVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        59 ~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                        |+++|.+|.+|+||||+|+..++.+++ ++|+++|++++..|.+|.||||+|+..   +..+++++|.+.|++..
T Consensus       147 --gad~n~~d~~g~tpLh~A~~~~~~~iv-~~Ll~~g~~~n~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~g~~i~  217 (434)
T PHA02874        147 --GADVNIEDDNGCYPIHIAIKHNFFDII-KLLLEKGAYANVKDNNGESPLHNAAEY---GDYACIKLLIDHGNHIM  217 (434)
T ss_pred             --CCCCCCcCCCCCCHHHHHHHCCcHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCCc
Confidence              999999999999999999999999998 999999999999999999999999998   55689999999887654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=173.19  Aligned_cols=131  Identities=18%  Similarity=0.037  Sum_probs=118.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc-------------------cc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL-------------------VR   61 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~-------------------~g   61 (326)
                      .||||.|++.|+.++++.|+++|+++ +..+..|.||||.|+..|+.+++++|++....                   .|
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g  114 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG  114 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCc
Confidence            48999999999999999999999998 67799999999999999999999999876210                   35


Q ss_pred             ccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           62 SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        62 ~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      ++++.+|.+|+||||+|+..|+.+.+ ++|+++|++++.+|.+|.||||+|+..   +..+++++|.+.|+++..
T Consensus       115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v-~~Ll~~gad~n~~d~~g~tpLh~A~~~---~~~~iv~~Ll~~g~~~n~  185 (434)
T PHA02874        115 IDVNIKDAELKTFLHYAIKKGDLESI-KMLFEYGADVNIEDDNGCYPIHIAIKH---NFFDIIKLLLEKGAYANV  185 (434)
T ss_pred             CCCCCCCCCCccHHHHHHHCCCHHHH-HHHHhCCCCCCCcCCCCCCHHHHHHHC---CcHHHHHHHHHCCCCCCC
Confidence            67888999999999999999999999 999999999999999999999999998   567899999999987653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=5e-20  Score=158.94  Aligned_cols=125  Identities=22%  Similarity=0.245  Sum_probs=111.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      +||||||+.||..+++.|+.+|+.+ +..+....||||+|+.+||.++|+.|++.    .+++|..+..||||||+||..
T Consensus        36 splhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~----kadvnavnehgntplhyacfw  110 (448)
T KOG0195|consen   36 SPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSR----KADVNAVNEHGNTPLHYACFW  110 (448)
T ss_pred             chhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHH----hcccchhhccCCCchhhhhhh
Confidence            7999999999999999999999998 67788888999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+..+. +-|+..|+.+++.|++|.||++.|...   ....+.+.-.+.|..+.
T Consensus       111 gydqia-edli~~ga~v~icnk~g~tpldkakp~---l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  111 GYDQIA-EDLISCGAAVNICNKKGMTPLDKAKPM---LKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             cHHHHH-HHHHhccceeeecccCCCCchhhhchH---HHHHHHHHHHHhCCCCC
Confidence            988887 999999999999999999999988655   44445555555665544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=1.1e-19  Score=145.90  Aligned_cols=119  Identities=18%  Similarity=0.130  Sum_probs=110.6

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCC
Q 020462            4 LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRP   83 (326)
Q Consensus         4 Lh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~   83 (326)
                      +.+|+..+.++.|+.||+..++..+.+|.+|.||||-|+.+|+.++++.|+..    |++.+.+..+|+||||.||..++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~----gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS----GANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc----cCCcccccccCccchhhhhcccc
Confidence            57899999999999999999999899999999999999999999999999999    99999999999999999999999


Q ss_pred             chHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHH
Q 020462           84 DEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKD  129 (326)
Q Consensus        84 ~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~  129 (326)
                      .+++ .+|+.+|+|+|+..+..+||||+++...  +....+++|+.
T Consensus       143 ~~va-~~LLqhgaDVnA~t~g~ltpLhlaa~~r--n~r~t~~~Ll~  185 (228)
T KOG0512|consen  143 FEVA-GRLLQHGADVNAQTKGLLTPLHLAAGNR--NSRDTLELLLH  185 (228)
T ss_pred             hhHH-HHHHhccCcccccccccchhhHHhhccc--chHHHHHHHhh
Confidence            9999 9999999999999999999999999875  44555666554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.81  E-value=1.3e-19  Score=175.86  Aligned_cols=127  Identities=21%  Similarity=0.258  Sum_probs=84.1

Q ss_pred             CcHHHHHHHcC--cHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCC------C
Q 020462            1 MTALHLAADRG--YVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKG------N   72 (326)
Q Consensus         1 ~TpLh~Aa~~G--~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G------~   72 (326)
                      +||||+|+..|  +.++++.|+++|+++ +.+|..|.||||+|+..|+.+++++|++.    |++++.+|..|      .
T Consensus       142 ~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~----ga~~~~~~~~~~~~~~~~  216 (480)
T PHA03100        142 ENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDN----GADINAGDIETLLFTIFE  216 (480)
T ss_pred             CcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHc----CCCccCCCCCCCcHHHHH
Confidence            46777777777  777777777777776 55566777777777777777777777776    66666666666      6


Q ss_pred             cHHHHHHhcCC--chHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           73 TPLHVLAAVRP--DEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        73 TpLH~Aa~~~~--~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      ||||.|+..++  .+.+ ++|++.|++++.+|..|.||||+|+..   +..+++++|++.|+++..
T Consensus       217 t~l~~a~~~~~~~~~iv-~~Ll~~g~din~~d~~g~TpL~~A~~~---~~~~iv~~Ll~~gad~n~  278 (480)
T PHA03100        217 TPLHIAACYNEITLEVV-NYLLSYGVPINIKDVYGFTPLHYAVYN---NNPEFVKYLLDLGANPNL  278 (480)
T ss_pred             hHHHHHHHhCcCcHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCc
Confidence            66666666666  5665 666666666666666666666666665   334566666666665543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.81  E-value=1.6e-19  Score=185.49  Aligned_cols=127  Identities=18%  Similarity=0.202  Sum_probs=111.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ++||.||..|+.++++.|+++|+|+ +..|.+|+||||+|+.+|+.++++.|++.    |+++|.+|.+|+||||+|+..
T Consensus       527 ~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~----gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        527 SNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKH----ACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhc----CCCCCCcCCCCCCHHHHHHHh
Confidence            6799999999999999999999998 77899999999999999999999999998    999999999999998866655


Q ss_pred             CC-------------------------------chHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           82 RP-------------------------------DEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        82 ~~-------------------------------~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                      |+                               .+.+ ++|+++|+|+|.+|.+|.||||+|+..   ++.+++++|+++
T Consensus       602 g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v-~~Ll~~Gadin~~d~~G~TpLh~A~~~---g~~~iv~~Ll~~  677 (823)
T PLN03192        602 KHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAM-KELLKQGLNVDSEDHQGATALQVAMAE---DHVDMVRLLIMN  677 (823)
T ss_pred             CCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHC---CcHHHHHHHHHc
Confidence            54                               4455 678889999999999999999999999   667999999999


Q ss_pred             CCCCCCC
Q 020462          131 GRGQYSD  137 (326)
Q Consensus       131 g~~~~~~  137 (326)
                      |+++...
T Consensus       678 GAdv~~~  684 (823)
T PLN03192        678 GADVDKA  684 (823)
T ss_pred             CCCCCCC
Confidence            9887643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.81  E-value=2.5e-19  Score=178.38  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=106.7

Q ss_pred             CcHHHHHHHcCc--HHHHHHHHHhCCcccccccCCCccHHHHH-------------------------------------
Q 020462            1 MTALHLAADRGY--VGIVKAIISKNLECYELVDNRGWNFLHYA-------------------------------------   41 (326)
Q Consensus         1 ~TpLh~Aa~~G~--~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A-------------------------------------   41 (326)
                      +||||+|++.|+  .++++.|+++|+|+ +.+|..|+||||.|                                     
T Consensus       213 ~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~A  291 (764)
T PHA02716        213 ITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITL  291 (764)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHH
Confidence            589999999885  48899999999998 77788999999865                                     


Q ss_pred             HHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh--cCCchHHHHHHhhcccCcccccccCcCHHHhHhhC----
Q 020462           42 MVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA--VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG----  115 (326)
Q Consensus        42 ~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~--~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~----  115 (326)
                      +.+|+.++++.|++.    |+++|.+|.+|+||||+|+.  .++.+.+ ++|+++|+|++.+|..|+||||+|...    
T Consensus       292 A~~g~leiVklLLe~----GAdIN~kD~~G~TPLH~Aaa~~~~~~eIV-klLLe~GADIN~kD~~G~TPLH~A~~~lav~  366 (764)
T PHA02716        292 ARNIDISVVYSFLQP----GVKLHYKDSAGRTCLHQYILRHNISTDII-KLLHEYGNDLNEPDNIGNTVLHTYLSMLSVV  366 (764)
T ss_pred             HHcCCHHHHHHHHhC----CCceeccCCCCCCHHHHHHHHhCCCchHH-HHHHHcCCCCccCCCCCCCHHHHHHHhhhhh
Confidence            345677788888887    89999999999999998764  4567787 999999999999999999999987642    


Q ss_pred             -------CCchHHHHHHHHHHcCCCCCCCCc
Q 020462          116 -------YPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus       116 -------~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                             ......+++++|+++|+++...+.
T Consensus       367 ~~ld~~~~~~~~~eVVklLL~~GADIn~kn~  397 (764)
T PHA02716        367 NILDPETDNDIRLDVIQCLISLGADITAVNC  397 (764)
T ss_pred             ccccccccccChHHHHHHHHHCCCCCCCcCC
Confidence                   011467899999999888765443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.81  E-value=3.1e-19  Score=172.75  Aligned_cols=130  Identities=21%  Similarity=0.279  Sum_probs=116.6

Q ss_pred             CcHHHHHHHcC---cHHHHHHHHHhCCcccccccCCCccHHHHHHHcC-ChhHHHHHHhcCccccccccccCCCCCcHHH
Q 020462            1 MTALHLAADRG---YVGIVKAIISKNLECYELVDNRGWNFLHYAMVSF-YVEELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         1 ~TpLh~Aa~~G---~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g-~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      +||||+|+..|   +.++++.|++.|+|+ +.+|..|+||||+|+.+| +.+++++|++.    |+++|.+|.+|+||||
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~----ga~in~~~~~g~tpLh  122 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDVIKLLIKA----GADVNAKDKVGRTPLH  122 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHHHHHHHHc----CCCCCCCCCCCCCHHH
Confidence            59999999998   999999999999998 778999999999999999 59999999999    9999999999999999


Q ss_pred             HHH--hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCC
Q 020462           77 VLA--AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus        77 ~Aa--~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      +|+  ..++.+.+ ++|+++|+|++.+|..|.||||+|...+. ...+++++|.+.|+++...
T Consensus       123 ~a~~~~~~~~~iv-~~Ll~~gad~~~~d~~g~tpL~~a~~~~~-~~~~iv~~Ll~~g~~~~~~  183 (471)
T PHA03095        123 VYLSGFNINPKVI-RLLLRKGADVNALDLYGMTPLAVLLKSRN-ANVELLRLLIDAGADVYAV  183 (471)
T ss_pred             HHhhCCcCCHHHH-HHHHHcCCCCCccCCCCCCHHHHHHHcCC-CCHHHHHHHHHcCCCCccc
Confidence            999  45567787 99999999999999999999999987752 4568899999988876643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.80  E-value=2.6e-19  Score=167.82  Aligned_cols=129  Identities=12%  Similarity=-0.054  Sum_probs=96.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccc-----cCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHH
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELV-----DNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~-----d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      ||||.|+..|+.++++.|+++|++..+..     +..|.+++|.|+.+++.|++++|+++    |+++|.+|.+|+||||
T Consensus       151 t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~----GADIN~kD~~G~TpLh  226 (437)
T PHA02795        151 NAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY----IEDINQLDAGGRTLLY  226 (437)
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC----cCCcCcCCCCCCCHHH
Confidence            55666666666666666666654332222     12355666666666666666666666    8999999999999999


Q ss_pred             HHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCc-----hHHHHHHHHHHcCCCCC
Q 020462           77 VLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPE-----LKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        77 ~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~-----~~~~i~~~L~~~g~~~~  135 (326)
                      +|+..|+.+.+ ++|+++|++++.+|.+|.||||+|+..++.     ...+++++|+++|++..
T Consensus       227 ~Aa~~g~~eiV-elLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        227 RAIYAGYIDLV-SWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             HHHHcCCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            99999999998 999999999999999999999999988642     46789999998886544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.80  E-value=3.9e-19  Score=172.52  Aligned_cols=128  Identities=18%  Similarity=0.169  Sum_probs=82.4

Q ss_pred             CcHHHHHH--HcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcC--ChhHHHHHHhcCccccccccccCCCCCcHHH
Q 020462            1 MTALHLAA--DRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSF--YVEELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         1 ~TpLh~Aa--~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g--~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      +||||+|+  ..|+.++++.|+++|+++ +..|..|+||||+|+..|  +.++++.|++.    |+++|.+|.+|+||||
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~----g~din~~d~~g~tpL~  181 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDK----GVDINAKNRYGYTPLH  181 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHC----CCCcccccCCCCCHHH
Confidence            36666666  666666666666666665 555666666666666666  66666666666    6666666666666666


Q ss_pred             HHHhcCCchHHHHHHhhcccCcccccccC------cCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           77 VLAAVRPDEFDVRMIRKMQANFDAVNKQN------VSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        77 ~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g------~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      +|+..|+.+.+ ++|+++|++++..+..|      .||+|.|+..++ ...+++++|++.|+++.
T Consensus       182 ~A~~~~~~~iv-~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~iv~~Ll~~g~din  244 (480)
T PHA03100        182 IAVEKGNIDVI-KFLLDNGADINAGDIETLLFTIFETPLHIAACYNE-ITLEVVNYLLSYGVPIN  244 (480)
T ss_pred             HHHHhCCHHHH-HHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc-CcHHHHHHHHHcCCCCC
Confidence            66666666666 66666666666666666      666666666532 11566666666665544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=8e-20  Score=166.84  Aligned_cols=117  Identities=22%  Similarity=0.195  Sum_probs=106.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      |||--||..||.|++|+|+++++|+ +..|..|.|.||+||..||.+++++|++.    |+|+|.++..|||+||.+++.
T Consensus       119 tPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~----gADvn~ks~kGNTALH~caEs  193 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQ----GADVNAKSYKGNTALHDCAES  193 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHh----CCCcchhcccCchHHHhhhhc
Confidence            8999999999999999999999998 89999999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHH
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSK  128 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~  128 (326)
                      |+.+++ ++|+.+|+.++. |..|.|||-.|...++   .++++.|.
T Consensus       194 G~vdiv-q~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~---~~iVe~L~  235 (615)
T KOG0508|consen  194 GSVDIV-QLLLKHGAKIDV-DGHGMTPLLLAAVTGH---TDIVERLL  235 (615)
T ss_pred             ccHHHH-HHHHhCCceeee-cCCCCchHHHHhhhcc---hHHHHHHh
Confidence            999999 999999987764 5669999999998854   45555555

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.80  E-value=4.3e-19  Score=176.72  Aligned_cols=132  Identities=11%  Similarity=0.058  Sum_probs=112.9

Q ss_pred             CcHHHHHHH--cCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCC--hhHHHHHHhcCccccccccccCCCCCcHHH
Q 020462            1 MTALHLAAD--RGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFY--VEELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         1 ~TpLh~Aa~--~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~--~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      +||||.|+.  .|+.+++++|+++|+++ +.+|.+|+||||+|+.+|+  .+++++|++.    |+++|.+|.+|+||||
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~----GADVN~kD~~G~TPLh  252 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKIIEL----GGDMDMKCVNGMSPIM  252 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc----CCCCCCCCCCCCCHHH
Confidence            589999875  46899999999999998 7789999999999999996  4899999999    9999999999999999


Q ss_pred             HHH-------------------------------------hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCch
Q 020462           77 VLA-------------------------------------AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPEL  119 (326)
Q Consensus        77 ~Aa-------------------------------------~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~  119 (326)
                      .|+                                     +.|+.+.+ ++|+++|++++.+|.+|+||||+|+..+. .
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiV-klLLe~GAdIN~kD~~G~TPLH~Aaa~~~-~  330 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVV-YSFLQPGVKLHYKDSAGRTCLHQYILRHN-I  330 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHH-HHHHhCCCceeccCCCCCCHHHHHHHHhC-C
Confidence            753                                     34666777 99999999999999999999999764321 3


Q ss_pred             HHHHHHHHHHcCCCCCCCCc
Q 020462          120 KEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus       120 ~~~i~~~L~~~g~~~~~~~~  139 (326)
                      ..+++++|++.|+++...+.
T Consensus       331 ~~eIVklLLe~GADIN~kD~  350 (764)
T PHA02716        331 STDIIKLLHEYGNDLNEPDN  350 (764)
T ss_pred             CchHHHHHHHcCCCCccCCC
Confidence            45899999999988764443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.79  E-value=6.3e-19  Score=170.64  Aligned_cols=129  Identities=19%  Similarity=0.159  Sum_probs=96.2

Q ss_pred             CcHHHHHHHcC--cHHHHHHHHHhCCcccccccCCCccHHHHHHHc--CChhHHHHHHhcCccccccccccCCCCCcHHH
Q 020462            1 MTALHLAADRG--YVGIVKAIISKNLECYELVDNRGWNFLHYAMVS--FYVEELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         1 ~TpLh~Aa~~G--~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~--g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      +||||.|+..+  +.++++.|+++|+++.. .|..|+||||+|+..  ++.++++.|++.    |++++.+|.+|+||||
T Consensus       153 ~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~----g~~~~~~d~~g~tpLh  227 (471)
T PHA03095        153 MTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRA----GCDPAATDMLGNTPLH  227 (471)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHHCCCcHHHHHHHHHc----CCCCcccCCCCCCHHH
Confidence            47888887765  57788888888888744 377888888887764  566778888877    7888888888888888


Q ss_pred             HHHhcCCc--hHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           77 VLAAVRPD--EFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        77 ~Aa~~~~~--~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      +|+..++.  ..+ +.|++.|+++|.+|.+|+||||+|+..   +..+++++|++.|+++...+
T Consensus       228 ~Aa~~~~~~~~~v-~~ll~~g~din~~d~~g~TpLh~A~~~---~~~~~v~~LL~~gad~n~~~  287 (471)
T PHA03095        228 SMATGSSCKRSLV-LPLLIAGISINARNRYGQTPLHYAAVF---NNPRACRRLIALGADINAVS  287 (471)
T ss_pred             HHHhcCCchHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCcccC
Confidence            88877764  234 677777888888888888888888877   45577777888777775433

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=8.4e-19  Score=130.71  Aligned_cols=89  Identities=34%  Similarity=0.396  Sum_probs=82.0

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCC
Q 020462            4 LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRP   83 (326)
Q Consensus         4 Lh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~   83 (326)
                      ||+||+.|+.++++.|++.+++. +.    |+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLEN----GADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHT----TTCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHh----cccccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999999887 22    99999999999999999999999    99999999999999999999999


Q ss_pred             chHHHHHHhhcccCccccc
Q 020462           84 DEFDVRMIRKMQANFDAVN  102 (326)
Q Consensus        84 ~~~v~~lLl~~g~d~~~~n  102 (326)
                      .+++ ++|+++|++++.+|
T Consensus        72 ~~~~-~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   72 LEIV-KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHH-HHHHHTTT-TTSS-
T ss_pred             HHHH-HHHHHcCCCCCCcC
Confidence            9999 99999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.78  E-value=4.3e-19  Score=179.38  Aligned_cols=124  Identities=21%  Similarity=0.190  Sum_probs=110.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHH--------------------------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAM--------------------------------------   42 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~--------------------------------------   42 (326)
                      .||||.|+..||.|+|+.|++.+|+.....|..|+||||+|+                                      
T Consensus        42 ~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (682)
T PHA02876         42 FTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEAC  121 (682)
T ss_pred             chHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHH
Confidence            489999999999999999999999987888999999999766                                      


Q ss_pred             --------------------------------HcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHH
Q 020462           43 --------------------------------VSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRM   90 (326)
Q Consensus        43 --------------------------------~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~l   90 (326)
                                                      ..|+.+++++|++.    |+++|.+|.+|+||||+|+..|+.+++ ++
T Consensus       122 ~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~----Gadvn~~d~~G~TpLh~Aa~~G~~~iv-~~  196 (682)
T PHA02876        122 IHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG----GADVNAKDIYCITPIHYAAERGNAKMV-NL  196 (682)
T ss_pred             HHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHHCCCHHHH-HH
Confidence                                            44677888999998    999999999999999999999999999 99


Q ss_pred             HhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           91 IRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        91 Ll~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      |+++|+|++..+.+|.||++.|...+   ..++++.|.+.+.
T Consensus       197 LL~~Gad~n~~~~~g~t~L~~A~~~~---~~~ivk~Ll~~~~  235 (682)
T PHA02876        197 LLSYGADVNIIALDDLSVLECAVDSK---NIDTIKAIIDNRS  235 (682)
T ss_pred             HHHCCCCcCccCCCCCCHHHHHHHcC---CHHHHHHHHhcCC
Confidence            99999999999999999999999884   4456666655443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.77  E-value=3e-18  Score=173.27  Aligned_cols=127  Identities=21%  Similarity=0.143  Sum_probs=82.2

Q ss_pred             cHHHHHHHc-CcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            2 TALHLAADR-GYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         2 TpLh~Aa~~-G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      ||||+|+.. ++.++++.|++.|.++ +.+|..|+||||+|+..|+.++++.|++.    |++++.+|..|.||||+|+.
T Consensus       343 TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~----gad~~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        343 TPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDY----GADIEALSQKIGTALHFALC  417 (682)
T ss_pred             cHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCccccCCCCCchHHHHHH
Confidence            556666553 3455666666666665 55566666666666666666666666666    66666666666666666666


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .++...++++|+++|+++|.+|.+|+||||+|+..+  ...+++++|++.|+++.
T Consensus       418 ~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~--~~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        418 GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN--CKLDVIEMLLDNGADVN  470 (682)
T ss_pred             cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhC--CcHHHHHHHHHCCCCCC
Confidence            554433226777777777777777777777777642  23467777777776665

>PHA02946 ankyin-like protein; Provisional

Probab=99.76  E-value=4.2e-18  Score=163.38  Aligned_cols=128  Identities=16%  Similarity=0.100  Sum_probs=114.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCC--hhHHHHHHhcCccccccccc-cCCCCCcHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFY--VEELGNLLENNPLVRSLIIE-GDVKGNTPLHV   77 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~--~~vv~~Ll~~~~~~g~~in~-~d~~G~TpLH~   77 (326)
                      +||||+||+.|+.++++.|+++|+++ +.+|.+|+||||+|+.+++  .+++++|++.    |+++|. .|.+|.|||| 
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~----Gadin~~~d~~g~tpL~-  146 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLVQY----GAKINNSVDEEGCGPLL-  146 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHc----CCCcccccCCCCCcHHH-
Confidence            59999999999999999999999998 7889999999999988764  7899999999    999995 6999999998 


Q ss_pred             HHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           78 LAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        78 Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      |+..++.+.+ ++|++.|++++.+|+.|+||||+|...++ ...+++++|++.|+++..
T Consensus       147 aa~~~~~~vv-~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~-~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        147 ACTDPSERVF-KKIMSIGFEARIVDKFGKNHIHRHLMSDN-PKASTISWMMKLGISPSK  203 (446)
T ss_pred             HHHCCChHHH-HHHHhccccccccCCCCCCHHHHHHHhcC-CCHHHHHHHHHcCCCCcc
Confidence            6667888888 99999999999999999999999987643 345789999999988764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=1.3e-18  Score=158.98  Aligned_cols=123  Identities=15%  Similarity=0.084  Sum_probs=114.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      +||--|+..||+++|+.|+++++++ +.......|||..||.-|+.|++++|+++    |+|++..|+.|+|.||+||.+
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~----gad~~IanrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEH----GADPEIANRHGHTCLMIACYK  160 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHc----CCCCcccccCCCeeEEeeecc
Confidence            5777788899999999999999998 55577788999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      |+.+++ ++|++.|+|+|.++..|.|+||.+++.   ++.++++.|+++|+.
T Consensus       161 Gh~~I~-qyLle~gADvn~ks~kGNTALH~caEs---G~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  161 GHVDIA-QYLLEQGADVNAKSYKGNTALHDCAES---GSVDIVQLLLKHGAK  208 (615)
T ss_pred             CchHHH-HHHHHhCCCcchhcccCchHHHhhhhc---ccHHHHHHHHhCCce
Confidence            999999 999999999999999999999999999   667999999986643

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.76  E-value=4e-18  Score=166.09  Aligned_cols=74  Identities=19%  Similarity=0.330  Sum_probs=35.9

Q ss_pred             cHHHHHHHc---CcHHHHHHHHHhCCcccccccCCCccHHHHHHHc--CChhHHHHHHhcCccccccccc-cCCCCCcHH
Q 020462            2 TALHLAADR---GYVGIVKAIISKNLECYELVDNRGWNFLHYAMVS--FYVEELGNLLENNPLVRSLIIE-GDVKGNTPL   75 (326)
Q Consensus         2 TpLh~Aa~~---G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~--g~~~vv~~Ll~~~~~~g~~in~-~d~~G~TpL   75 (326)
                      ||||.|+..   |+.++++.|+++|+|+++.+|..|+||||+|+..  ++.+++++|++.    |++++. .|..|.|||
T Consensus       110 tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~----Gadi~~~~~~~g~tpL  185 (494)
T PHA02989        110 SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF----GVNLFEKTSLYGLTPM  185 (494)
T ss_pred             cHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc----CCCccccccccCCChH
Confidence            555544433   3455555555555554334455555555555432  344555555554    444444 344444444


Q ss_pred             HHHH
Q 020462           76 HVLA   79 (326)
Q Consensus        76 H~Aa   79 (326)
                      |.|+
T Consensus       186 ~~a~  189 (494)
T PHA02989        186 NIYL  189 (494)
T ss_pred             HHHH
Confidence            4443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=4e-18  Score=137.03  Aligned_cols=110  Identities=25%  Similarity=0.239  Sum_probs=100.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .||||.|+++||++++++|+..|++. +.+...||||||-||.-++.+++..|+.+    |+++|.+.....||||+||.
T Consensus        98 YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~va~~LLqh----gaDVnA~t~g~ltpLhlaa~  172 (228)
T KOG0512|consen   98 YTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFEVAGRLLQH----GADVNAQTKGLLTPLHLAAG  172 (228)
T ss_pred             ccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchhHHHHHHhc----cCcccccccccchhhHHhhc
Confidence            38999999999999999999999998 88899999999999999999999999999    99999999988999999999


Q ss_pred             cCCchHHHHHH-hhcccCcccccccCcCHHHhHhhC
Q 020462           81 VRPDEFDVRMI-RKMQANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        81 ~~~~~~v~~lL-l~~g~d~~~~n~~g~TpL~~A~~~  115 (326)
                      ..+.....++| .++++++..+|+.+.||+++|.+.
T Consensus       173 ~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  173 NRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             ccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            87766543554 568899999999999999999876

>PHA02795 ankyrin-like protein; Provisional

Probab=99.75  E-value=7.9e-18  Score=157.82  Aligned_cols=126  Identities=6%  Similarity=-0.085  Sum_probs=111.4

Q ss_pred             CcHHHHHHH--cCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccc-ccc-----CCCCC
Q 020462            1 MTALHLAAD--RGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLI-IEG-----DVKGN   72 (326)
Q Consensus         1 ~TpLh~Aa~--~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~i-n~~-----d~~G~   72 (326)
                      +|+||.|+.  .|+.+++++|+++|+|+ +.  .++.||||.|+.+++.+++++|+++    |++. +..     +..|.
T Consensus       117 ~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~----Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        117 QDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNC----GIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhc----CCcccccccchhhhhhcc
Confidence            689999999  99999999999999998 44  3558999999999999999999999    7633 222     24588


Q ss_pred             cHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCC
Q 020462           73 TPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus        73 TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      |++|.|+..++.+.+ ++|+++|+|+|.+|.+|.||||+|+..   +..+++++|++.|++....
T Consensus       190 t~l~~a~~~~~~eIv-e~LIs~GADIN~kD~~G~TpLh~Aa~~---g~~eiVelLL~~GAdIN~~  250 (437)
T PHA02795        190 TRGFLVDEPTVLEIY-KLCIPYIEDINQLDAGGRTLLYRAIYA---GYIDLVSWLLENGANVNAV  250 (437)
T ss_pred             chhHHHHhcCHHHHH-HHHHhCcCCcCcCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCc
Confidence            999999999999999 999999999999999999999999999   6679999999999887743

>PHA02798 ankyrin-like protein; Provisional

Probab=99.75  E-value=9.6e-18  Score=163.25  Aligned_cols=120  Identities=21%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             cCcHHHHHHHHHhCCcccccccCCCccHHHHHHHc-----CChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcC--
Q 020462           10 RGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVS-----FYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVR--   82 (326)
Q Consensus        10 ~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~-----g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~--   82 (326)
                      .++.++++.|+++|+|+ +.+|..|.||||.|+.+     ++.++++.|++.    |+++|.+|.+|+||||+|+..+  
T Consensus        48 ~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~----GadiN~~d~~G~TpLh~a~~~~~~  122 (489)
T PHA02798         48 SPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN----GADINKKNSDGETPLYCLLSNGYI  122 (489)
T ss_pred             CCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC----CCCCCCCCCCcCcHHHHHHHcCCc
Confidence            44667777777777776 55667777777776653     456677777776    7777777777777777777654  


Q ss_pred             -CchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           83 -PDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        83 -~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                       +.+.+ ++|+++|+|++.+|.+|.||||+|.+.++....+++++|++.|+++.
T Consensus       123 ~~~~iv-~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin  175 (489)
T PHA02798        123 NNLEIL-LFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN  175 (489)
T ss_pred             ChHHHH-HHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc
Confidence             44555 67777777777777777777777776644334566777777666553

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.74  E-value=9.1e-18  Score=140.06  Aligned_cols=101  Identities=15%  Similarity=0.094  Sum_probs=92.5

Q ss_pred             CcHHHHHHHcCcHHH---HHHHHHhCCccccccc-CCCccHHHHHHHcCChhHHHHHHh-cCccccccccccCCCCCcHH
Q 020462            1 MTALHLAADRGYVGI---VKAIISKNLECYELVD-NRGWNFLHYAMVSFYVEELGNLLE-NNPLVRSLIIEGDVKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~i---v~~Ll~~~~d~~~~~d-~~G~tpLh~A~~~g~~~vv~~Ll~-~~~~~g~~in~~d~~G~TpL   75 (326)
                      +||||+||..|+.+.   ++.|+++|+++ +.+| ..|+||||+|+..|+.+++++|++ .    |++++.+|.+|+|||
T Consensus        58 ~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~----gad~~~~d~~g~tpL  132 (166)
T PHA02743         58 RQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQL----GVNLGAINYQHETAY  132 (166)
T ss_pred             CcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc----CCCccCcCCCCCCHH
Confidence            699999999998654   89999999998 6677 589999999999999999999995 6    899999999999999


Q ss_pred             HHHHhcCCchHHHHHHhhcccCcccccccCcC
Q 020462           76 HVLAAVRPDEFDVRMIRKMQANFDAVNKQNVS  107 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~T  107 (326)
                      |+|+..++.+++ ++|+++|++++.++..|..
T Consensus       133 ~~A~~~~~~~iv-~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        133 HIAYKMRDRRMM-EILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             HHHHHcCCHHHH-HHHHHcCCCCCCcccCCcc
Confidence            999999999998 9999999999999988753

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.74  E-value=1.6e-17  Score=161.91  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=79.5

Q ss_pred             cHHHHHHHc--CcHHHHHHHHHhCCcccccccCCCccHHHHHHHcC------ChhHHHHHHhcCccccccccccCCCCCc
Q 020462            2 TALHLAADR--GYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSF------YVEELGNLLENNPLVRSLIIEGDVKGNT   73 (326)
Q Consensus         2 TpLh~Aa~~--G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g------~~~vv~~Ll~~~~~~g~~in~~d~~G~T   73 (326)
                      ||||.++..  |+.++++.|+++|+|+ +.++ .|.||||.|+.++      +.+++++|++.    |+++|.+|.+|.|
T Consensus        37 t~l~~~~~~~~~~~~iv~~Ll~~GAdv-n~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~----Gadin~~d~~g~t  110 (494)
T PHA02989         37 SILLLYLKRKDVKIKIVKLLIDNGADV-NYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKF----GADINLKTFNGVS  110 (494)
T ss_pred             CHHHHHHhcCCCChHHHHHHHHcCCCc-cCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC----CCCCCCCCCCCCc
Confidence            566554433  3567777777777776 4433 4567777666543      34667777776    7777777777777


Q ss_pred             HHHHHHhc---CCchHHHHHHhhcccCc-ccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           74 PLHVLAAV---RPDEFDVRMIRKMQANF-DAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        74 pLH~Aa~~---~~~~~v~~lLl~~g~d~-~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      |||.|+..   ++.+.+ ++|+++|+|+ +.+|.+|+||||+|..... ...+++++|++.|+++..
T Consensus       111 pL~~a~~~~~~~~~eiv-~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~-~~~~iv~~Ll~~Gadi~~  175 (494)
T PHA02989        111 PIVCFIYNSNINNCDML-RFLLSKGINVNDVKNSRGYNLLHMYLESFS-VKKDVIKILLSFGVNLFE  175 (494)
T ss_pred             HHHHHHHhcccCcHHHH-HHHHHCCCCcccccCCCCCCHHHHHHHhcc-CCHHHHHHHHHcCCCccc
Confidence            77766543   455666 7777777777 6677777777776654321 345666777776666543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.73  E-value=1.3e-17  Score=162.41  Aligned_cols=131  Identities=19%  Similarity=0.131  Sum_probs=117.1

Q ss_pred             CcHHHHHHHc-----CcHHHHHHHHHhCCcccccccCCCccHHHHHHHcC---ChhHHHHHHhcCccccccccccCCCCC
Q 020462            1 MTALHLAADR-----GYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSF---YVEELGNLLENNPLVRSLIIEGDVKGN   72 (326)
Q Consensus         1 ~TpLh~Aa~~-----G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g---~~~vv~~Ll~~~~~~g~~in~~d~~G~   72 (326)
                      +||||.|+.+     ++.++++.|+++|+|+ +.+|..|+||||+|+.++   +.+++++|++.    |+++|.+|.+|.
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~  146 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIEN----GADTTLLDKDGF  146 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc----CCCccccCCCCC
Confidence            5999999864     7899999999999998 788999999999999986   68999999999    999999999999


Q ss_pred             cHHHHHHhcCC---chHHHHHHhhcccCccccc-ccCcCHHHhHhhCC-CchHHHHHHHHHHcCCCCCCC
Q 020462           73 TPLHVLAAVRP---DEFDVRMIRKMQANFDAVN-KQNVSVTNILLNGY-PELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus        73 TpLH~Aa~~~~---~~~v~~lLl~~g~d~~~~n-~~g~TpL~~A~~~~-~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      ||||+|++.++   .+.+ ++|+++|+|++.++ ..|.||+|.+.... .....+++++|.++|+.+...
T Consensus       147 tpL~~a~~~~~~~~~~vv-~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~  215 (489)
T PHA02798        147 TMLQVYLQSNHHIDIEII-KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKE  215 (489)
T ss_pred             cHHHHHHHcCCcchHHHH-HHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccC
Confidence            99999999987   7888 99999999999986 57999999988763 235789999999999988743

>PHA02917 ankyrin-like protein; Provisional

Probab=99.72  E-value=3.8e-17  Score=163.03  Aligned_cols=131  Identities=14%  Similarity=-0.004  Sum_probs=105.1

Q ss_pred             CcHHHHHHHc---CcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCCh------------------------------
Q 020462            1 MTALHLAADR---GYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYV------------------------------   47 (326)
Q Consensus         1 ~TpLh~Aa~~---G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~------------------------------   47 (326)
                      +||||+||..   |+.++++.|+++|+++ +..|..|+||||.|+..|+.                              
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~  111 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKS  111 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHh
Confidence            5999998666   8899999999999998 67799999999999887763                              


Q ss_pred             -----hHHHHHHhcCccccccccccCCCCCcHHHHHH--hcCCchHHHHHHhhcccCccccccc---C-----------c
Q 020462           48 -----EELGNLLENNPLVRSLIIEGDVKGNTPLHVLA--AVRPDEFDVRMIRKMQANFDAVNKQ---N-----------V  106 (326)
Q Consensus        48 -----~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa--~~~~~~~v~~lLl~~g~d~~~~n~~---g-----------~  106 (326)
                           |++++|++.    |+++|.+|.+|+||||.|+  ..|+.+++ ++|+++|+|++.+|.+   |           .
T Consensus       112 ~~~~~e~vk~Ll~~----Gadin~~d~~g~T~L~~~~a~~~~~~eiv-klLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~  186 (661)
T PHA02917        112 KNVDVDLIKVLVEH----GFDLSVKCENHRSVIENYVMTDDPVPEII-DLFIENGCSVLYEDEDDEYGYAYDDYQPRNCG  186 (661)
T ss_pred             hcCCHHHHHHHHHc----CCCCCccCCCCccHHHHHHHccCCCHHHH-HHHHHcCCCccccccccccccccccccccccc
Confidence                 333444444    8999999999999999654  56788998 9999999999876643   3           5


Q ss_pred             CHHHhHhhCC--------CchHHHHHHHHHHcCCCCCCC
Q 020462          107 SVTNILLNGY--------PELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus       107 TpL~~A~~~~--------~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      ||||+|+...        .....+++++|++.|++....
T Consensus       187 t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~  225 (661)
T PHA02917        187 TVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI  225 (661)
T ss_pred             cHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC
Confidence            9999997521        114679999999999887643

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.72  E-value=1.2e-17  Score=170.01  Aligned_cols=124  Identities=27%  Similarity=0.293  Sum_probs=110.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      |+||.|+..+++.+++.++++|.++ +.++.+|.||||.|+.+|+.++|++|+++    |++++.+|+.|+||||.||..
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~----gAdv~ak~~~G~TPLH~Aa~~  583 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLEH----GADVNAKDKLGYTPLHQAAQQ  583 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHhcCCchHHHHhhhC----CccccccCCCCCChhhHHHHc
Confidence            5677777777777777777777777 77789999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      |+.+++ .+|+++|+++|..|.+|.|||++|...   +..++.+.++..+..+
T Consensus       584 G~~~i~-~LLlk~GA~vna~d~~g~TpL~iA~~l---g~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  584 GHNDIA-ELLLKHGASVNAADLDGFTPLHIAVRL---GYLSVVKLLKVVTATP  632 (1143)
T ss_pred             ChHHHH-HHHHHcCCCCCcccccCcchhHHHHHh---cccchhhHHHhccCcc
Confidence            999999 999999999999999999999999999   5557888888877764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.72  E-value=1.2e-17  Score=139.04  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=103.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      |||.||+.+|++++|++|++.|+|+ +...+...++|.+|+..|..++|++|+..    +.++|.-|.+|-|||-+|++-
T Consensus       162 TpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r----~vdVNvyDwNGgTpLlyAvrg  236 (296)
T KOG0502|consen  162 TPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTR----EVDVNVYDWNGGTPLLYAVRG  236 (296)
T ss_pred             hHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhc----CCCcceeccCCCceeeeeecC
Confidence            8999999999999999999999998 77788888999999999999999999998    889999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHH
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQ  124 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~  124 (326)
                      ++.+++ +.|++.|+|++..+..|.++++.|...|......++
T Consensus       237 nhvkcv-e~Ll~sGAd~t~e~dsGy~~mdlAValGyr~Vqqvi  278 (296)
T KOG0502|consen  237 NHVKCV-ESLLNSGADVTQEDDSGYWIMDLAVALGYRIVQQVI  278 (296)
T ss_pred             ChHHHH-HHHHhcCCCcccccccCCcHHHHHHHhhhHHHHHHH
Confidence            999998 999999999999999999999999888654333333

>PHA02730 ankyrin-like protein; Provisional

Probab=99.71  E-value=4e-17  Score=160.06  Aligned_cols=126  Identities=16%  Similarity=0.047  Sum_probs=88.6

Q ss_pred             CcHHHHHHHcCc----HHHHHHHHHhCCc-ccccccCCCccHHHH---HHHcC---------ChhHHHHHHhcCcccccc
Q 020462            1 MTALHLAADRGY----VGIVKAIISKNLE-CYELVDNRGWNFLHY---AMVSF---------YVEELGNLLENNPLVRSL   63 (326)
Q Consensus         1 ~TpLh~Aa~~G~----~~iv~~Ll~~~~d-~~~~~d~~G~tpLh~---A~~~g---------~~~vv~~Ll~~~~~~g~~   63 (326)
                      +||||+|+..++    .++++.|+++|++ ..+.+|.+|+||||.   |..++         ..+++++|++.    |++
T Consensus       379 ~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~----GAD  454 (672)
T PHA02730        379 NYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY----MDD  454 (672)
T ss_pred             CcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc----ccc
Confidence            478887777764    7888888888763 125667778888873   33222         12457788877    788


Q ss_pred             ccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccc-cCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           64 IIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNK-QNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        64 in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~-~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      +|.+|..|+||||+|+..++.+.+ ++|+++|+++|.+|+ .|.||++.|..... +..++++.|+++|+
T Consensus       455 INakD~~G~TPLh~Aa~~~~~eiv-e~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~-~~~eIv~~LLs~ga  522 (672)
T PHA02730        455 IDMIDNENKTLLYYAVDVNNIQFA-RRLLEYGASVNTTSRSIINTAIQKSSYRRE-NKTKLVDLLLSYHP  522 (672)
T ss_pred             hhccCCCCCCHHHHHHHhCCHHHH-HHHHHCCCCCCCCCCcCCcCHHHHHHHhhc-CcHHHHHHHHHcCC
Confidence            888888888888888887777777 888888888888876 47888887765311 34677777777664

>PHA02917 ankyrin-like protein; Provisional

Probab=99.71  E-value=4.1e-17  Score=162.76  Aligned_cols=124  Identities=13%  Similarity=0.127  Sum_probs=105.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHH--HHcCChhHHHHHHhcCccccccccccCCC---C-----
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA--MVSFYVEELGNLLENNPLVRSLIIEGDVK---G-----   71 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A--~~~g~~~vv~~Ll~~~~~~g~~in~~d~~---G-----   71 (326)
                      +++|+|+..|+.|++++|+++|+|+ +..|.+|+||||.|  +.+|+.|++++|+++    |+++|.+|.+   |     
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~----Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIEN----GCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHc----CCCcccccccccccccccc
Confidence            3567788888999999999999999 77899999999964  457899999999999    9999876543   4     


Q ss_pred             ------CcHHHHHHh-----------cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           72 ------NTPLHVLAA-----------VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        72 ------~TpLH~Aa~-----------~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                            .||||+|+.           .++.+.+ ++|+++|+|+|.+|.+|.||||+|+..++. ..++++.|.+ |++
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv-~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~-~~eivk~Li~-g~d  255 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV-KCLINHGIKPSSIDKNYCTALQYYIKSSHI-DIDIVKLLMK-GID  255 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHH-HHHHHCCCCcccCCCCCCcHHHHHHHcCCC-cHHHHHHHHh-CCc
Confidence                  599999986           4577888 999999999999999999999999998653 3578998875 543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.71  E-value=3.6e-17  Score=158.11  Aligned_cols=127  Identities=20%  Similarity=0.191  Sum_probs=112.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccc--------------ccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECY--------------ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIE   66 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~--------------~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~   66 (326)
                      .||||.|+..|+.+.++.+|+.+....              +..|++|.||||+|++.|+.+.++.|+..    |+++|.
T Consensus       226 ~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~----Ga~I~~  301 (929)
T KOG0510|consen  226 ATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF----GASINS  301 (929)
T ss_pred             CcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc----CCcccc
Confidence            489999999999999999999876432              34689999999999999999999999999    999999


Q ss_pred             cCCCCCcHHHHHHhcCCchHHHHHHhh-cc-cCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           67 GDVKGNTPLHVLAAVRPDEFDVRMIRK-MQ-ANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        67 ~d~~G~TpLH~Aa~~~~~~~v~~lLl~-~g-~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ++.++.||||.||..|+.+++ +-|++ .| ...|..|..|.||||+|++.   ++.++++.|+..|+.-.
T Consensus       302 kn~d~~spLH~AA~yg~~ntv-~rLL~~~~~rllne~D~~g~tpLHlaa~~---gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  302 KNKDEESPLHFAAIYGRINTV-ERLLQESDTRLLNESDLHGMTPLHLAAKS---GHDRVVQLLLNKGALFL  368 (929)
T ss_pred             cCCCCCCchHHHHHcccHHHH-HHHHhCcCccccccccccCCCchhhhhhc---CHHHHHHHHHhcChhhh
Confidence            999999999999999999999 65555 43 56788899999999999988   67799999999887665

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=1.8e-16  Score=124.18  Aligned_cols=118  Identities=29%  Similarity=0.326  Sum_probs=108.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||.|++.|+.++++.|++.+++. ...|..|.+|+|.|+..++.++++.|++.    +..++..|..|.||+|.|+.
T Consensus         8 ~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~----~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           8 RTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEK----GADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCCCHHHHHHH
Confidence            58999999999999999999999987 67799999999999999999999999999    88899999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHH
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLS  127 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L  127 (326)
                      .++.+++ ++|++++.+.+..|..|.||+++|...   ...+++++|
T Consensus        83 ~~~~~~~-~~L~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVV-KLLLKHGADVNARDKDGRTPLHLAAKN---GHLEVVKLL  125 (126)
T ss_pred             cCcHHHH-HHHHHcCCCCcccCCCCCCHHHHHHhc---CCHHHHHHh
Confidence            9999998 999999999999999999999999988   445666554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.70  E-value=5.2e-17  Score=167.01  Aligned_cols=113  Identities=22%  Similarity=0.194  Sum_probs=97.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCc----------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP----------------------   58 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~----------------------   58 (326)
                      +||||+||..|+.++++.|+++|+|+ +.+|.+|+||||+|+..|+.++++.|++...                      
T Consensus       559 ~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~  637 (823)
T PLN03192        559 RTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTA  637 (823)
T ss_pred             CCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHH
Confidence            59999999999999999999999998 7889999999997777766666555433200                      


Q ss_pred             -----cccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccC-cCHHHhHhhC
Q 020462           59 -----LVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQN-VSVTNILLNG  115 (326)
Q Consensus        59 -----~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g-~TpL~~A~~~  115 (326)
                           ..|+++|.+|.+|+||||+|+..|+.+++ ++|+++|+|++..|.+| .||++++...
T Consensus       638 v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv-~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        638 MKELLKQGLNVDSEDHQGATALQVAMAEDHVDMV-RLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH-HHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence                 03899999999999999999999999999 99999999999999988 9999887543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.68  E-value=4e-17  Score=145.05  Aligned_cols=113  Identities=18%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccc--------------------------------------cCCCccHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELV--------------------------------------DNRGWNFLHYAM   42 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~--------------------------------------d~~G~tpLh~A~   42 (326)
                      +|+||||+.+++.++|+.||+.|-.-.+..                                      ...|+|+|++|+
T Consensus       269 NTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAV  348 (452)
T KOG0514|consen  269 NTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAV  348 (452)
T ss_pred             CeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhh
Confidence            589999999999999999998764222222                                      334667777777


Q ss_pred             HcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCc
Q 020462           43 VSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPE  118 (326)
Q Consensus        43 ~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~  118 (326)
                      .+|+.++|+.||..    |+|+|.||.+|-|+|+.||+.|+.+++ ++|+. .++|....|.+|.|+|.+|...++.
T Consensus       349 SHGr~d~vk~LLac----gAdVNiQDdDGSTALMCA~EHGhkEiv-klLLA~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  349 SHGRVDMVKALLAC----GADVNIQDDDGSTALMCAAEHGHKEIV-KLLLAVPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             hcCcHHHHHHHHHc----cCCCccccCCccHHHhhhhhhChHHHH-HHHhccCcccceeecCCCchhhhhHHhcCch
Confidence            77777777777777    777777777777777777777777777 55543 5677777777777777777777443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.68  E-value=2.3e-16  Score=154.71  Aligned_cols=126  Identities=11%  Similarity=-0.049  Sum_probs=111.3

Q ss_pred             CcHHHHHHHcC---cHHHHHHHHHhCCcccccccCCCccHHHHHHHcC--ChhHHHHHHhcCccccc--cccccCCCCCc
Q 020462            1 MTALHLAADRG---YVGIVKAIISKNLECYELVDNRGWNFLHYAMVSF--YVEELGNLLENNPLVRS--LIIEGDVKGNT   73 (326)
Q Consensus         1 ~TpLh~Aa~~G---~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g--~~~vv~~Ll~~~~~~g~--~in~~d~~G~T   73 (326)
                      +||||+|+..|   +.|+++.|+++|+|+ +.+|.+|+||||+|+..+  +.|++++|++.    |+  +.+..|..+.+
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~----~~~~~~~~~~~~~d~  116 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISS----YSNASNELTSNINDF  116 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhc----CCCCCcccccccCCc
Confidence            59999999997   599999999999998 778999999999999976  79999999998    65  45888988999


Q ss_pred             HHHHHHh--cCCchHHHHHHhh-cccCcccccc-----cCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           74 PLHVLAA--VRPDEFDVRMIRK-MQANFDAVNK-----QNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        74 pLH~Aa~--~~~~~~v~~lLl~-~g~d~~~~n~-----~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |||.++.  .++.+.+ ++|++ .+.|++..++     .|.+|+.++...   ...+++++|++.|+...
T Consensus       117 ~l~~y~~s~n~~~~~v-k~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~---~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        117 DLYSYMSSDNIDLRLL-KYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPN---PRPEVLLWLLKSECYST  182 (672)
T ss_pred             hHHHHHHhcCCcHHHH-HHHHHhcCCChhhhhhhhccccchhhhhHhcCC---CchHHHHHHHHcCCccc
Confidence            9999998  7888888 99986 7788887643     899999999998   67799999999998874

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.67  E-value=1.1e-15  Score=155.90  Aligned_cols=122  Identities=22%  Similarity=0.181  Sum_probs=102.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccccccc--------------CCCccHHHHHHHcCChhHHHHHHhcCccccccccc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVD--------------NRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIE   66 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d--------------~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~   66 (326)
                      +||||+||.+|+.++++.|+++|++++ .++              ..|+||||.|+..|+.+++++|++.    |+++|.
T Consensus       129 ~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~----gadin~  203 (743)
T TIGR00870       129 ITALHLAAHRQNYEIVKLLLERGASVP-ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED----PADILT  203 (743)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC----Ccchhh
Confidence            599999999999999999999999984 321              3599999999999999999999999    999999


Q ss_pred             cCCCCCcHHHHHHhcCC---------chHHHHHHhhcccC---c----ccccccCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           67 GDVKGNTPLHVLAAVRP---------DEFDVRMIRKMQAN---F----DAVNKQNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        67 ~d~~G~TpLH~Aa~~~~---------~~~v~~lLl~~g~d---~----~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                      +|..|+||||+|+..+.         ..+. +++++.+.+   .    +.+|++|.||||+|+..   ++.++.+.+++.
T Consensus       204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~-~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~---g~~~l~~lLL~~  279 (743)
T TIGR00870       204 ADSLGNTLLHLLVMENEFKAEYEELSCQMY-NFALSLLDKLRDSKELEVILNHQGLTPLKLAAKE---GRIVLFRLKLAI  279 (743)
T ss_pred             HhhhhhHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHhccCChHhhhhhcCCCCCCchhhhhhc---CCccHHHHHHHH
Confidence            99999999999999862         1233 556555444   3    77899999999999998   455788887774


Q ss_pred             C
Q 020462          131 G  131 (326)
Q Consensus       131 g  131 (326)
                      +
T Consensus       280 ~  280 (743)
T TIGR00870       280 K  280 (743)
T ss_pred             H
Confidence            4

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=2.1e-16  Score=114.10  Aligned_cols=102  Identities=19%  Similarity=0.157  Sum_probs=95.2

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCC
Q 020462            4 LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRP   83 (326)
Q Consensus         4 Lh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~   83 (326)
                      ..|+.++|..+-|+..+..+-++++.  ..|++|||+|+..|+.+++++|+..    |++++.+|+.|-|||-.|+..|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~i----GA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISI----GANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHh----ccccCCccccCCcHHHHHHHHhh
Confidence            56899999999999999999888554  3899999999999999999999999    99999999999999999999999


Q ss_pred             chHHHHHHhhcccCcccccccCcCHHHhH
Q 020462           84 DEFDVRMIRKMQANFDAVNKQNVSVTNIL  112 (326)
Q Consensus        84 ~~~v~~lLl~~g~d~~~~n~~g~TpL~~A  112 (326)
                      .+++ ++|+++|+|...+.-+|.+.++.+
T Consensus        80 ~~cV-klLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   80 RDCV-KLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHH-HHHHHcCcccceeCCCchhHHhhc
Confidence            9999 999999999999999999888755

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.66  E-value=1.6e-16  Score=130.89  Aligned_cols=94  Identities=14%  Similarity=0.052  Sum_probs=85.1

Q ss_pred             CcHHHHHHHcCcH---HHHHHHHHhCCccccccc-CCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHH
Q 020462            1 MTALHLAADRGYV---GIVKAIISKNLECYELVD-NRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         1 ~TpLh~Aa~~G~~---~iv~~Ll~~~~d~~~~~d-~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      +||||+|+..|+.   ++++.|++.|+++ +.+| ..|+||||+|+..|+.+++++|++.   .|.++|.+|..|.||||
T Consensus        56 ~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~---~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         56 KQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQ---PGVNMEILNYAFKTPYY  131 (154)
T ss_pred             CEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhC---CCCCCccccCCCCCHHH
Confidence            5899999999987   4688999999998 5666 5899999999999999999999973   28999999999999999


Q ss_pred             HHHhcCCchHHHHHHhhcccCcc
Q 020462           77 VLAAVRPDEFDVRMIRKMQANFD   99 (326)
Q Consensus        77 ~Aa~~~~~~~v~~lLl~~g~d~~   99 (326)
                      +|+..|+.+++ ++|++.|++.+
T Consensus       132 ~A~~~~~~~i~-~~Ll~~ga~~~  153 (154)
T PHA02736        132 VACERHDAKMM-NILRAKGAQCK  153 (154)
T ss_pred             HHHHcCCHHHH-HHHHHcCCCCC
Confidence            99999999998 99999998865

>PHA02792 ankyrin-like protein; Provisional

Probab=99.65  E-value=7.1e-16  Score=149.89  Aligned_cols=127  Identities=12%  Similarity=-0.071  Sum_probs=107.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCC--ccHHHHHHHcCChh---HHHHHHhcCccccccccccCCCCCcHHH
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRG--WNFLHYAMVSFYVE---ELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G--~tpLh~A~~~g~~~---vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      .++|.||..|+.++++.|+++|+++ +.+|.+|  .||||+|+.+...+   +++.|++.    |+++|.+|..|+||||
T Consensus       341 n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~----GADIN~kD~~G~TPLh  415 (631)
T PHA02792        341 NKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY----IDDINKIDKHGRSILY  415 (631)
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc----CCccccccccCcchHH
Confidence            4689999999999999999999998 6667764  69999988777654   57888888    9999999999999999


Q ss_pred             HHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhC---CCc----hHHHHHHHHHHcCCCC
Q 020462           77 VLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG---YPE----LKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        77 ~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~---~~~----~~~~i~~~L~~~g~~~  134 (326)
                      .|+..++.+.+ ++|+++|+|++.+|..|+||+++|...   ...    ...++++.+++.|.++
T Consensus       416 ~Aa~~~n~eiv-elLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        416 YCIESHSVSLV-EWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHcCCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            99999999998 999999999999999999999999762   111    2356788888877443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.65  E-value=4e-16  Score=158.94  Aligned_cols=132  Identities=22%  Similarity=0.255  Sum_probs=107.1

Q ss_pred             CcHHHHHHHcC-cHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc--------------------
Q 020462            1 MTALHLAADRG-YVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL--------------------   59 (326)
Q Consensus         1 ~TpLh~Aa~~G-~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~--------------------   59 (326)
                      +||+|+|++.| ..+....+++.+.++ +..-..|.||||+|+..|+.++++.|++....                    
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhh
Confidence            46777777777 666666666666666 55566777777777777777776666654200                    


Q ss_pred             ---------ccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           60 ---------VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        60 ---------~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                               .|++++.++.+|+||||.|+.+|+.+.| ++|+++|+|++.+++.|+||||.|+..   +..+++++|.+.
T Consensus       520 v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~V-kfLLe~gAdv~ak~~~G~TPLH~Aa~~---G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLV-KFLLEHGADVNAKDKLGYTPLHQAAQQ---GHNDIAELLLKH  595 (1143)
T ss_pred             HHHHHHHhhcCCceehhcccccchHHHHHhcCCchHH-HHhhhCCccccccCCCCCChhhHHHHc---ChHHHHHHHHHc
Confidence                     4899999999999999999999999999 999999999999999999999999999   577999999999


Q ss_pred             CCCCCCC
Q 020462          131 GRGQYSD  137 (326)
Q Consensus       131 g~~~~~~  137 (326)
                      |+.+...
T Consensus       596 GA~vna~  602 (1143)
T KOG4177|consen  596 GASVNAA  602 (1143)
T ss_pred             CCCCCcc
Confidence            9988743

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.64  E-value=1e-14  Score=141.84  Aligned_cols=122  Identities=21%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccccc--------ccC--------------CCccHHHHHHHcCChhHHHHHHhcCc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYEL--------VDN--------------RGWNFLHYAMVSFYVEELGNLLENNP   58 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~--------~d~--------------~G~tpLh~A~~~g~~~vv~~Ll~~~~   58 (326)
                      +||||+|..+.+.++|+.|++.|+|+...        .|.              -|+.||-.||.-+++|++++|+++  
T Consensus       185 qSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~--  262 (782)
T KOG3676|consen  185 QSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH--  262 (782)
T ss_pred             cchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc--
Confidence            59999999999999999999999997411        111              378899999999999999999999  


Q ss_pred             cccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccC--cccccccCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           59 LVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQAN--FDAVNKQNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        59 ~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d--~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                        |+|+|.+|..|||.||..+..-..+.- .+++++|++  ...+|++|.|||.+|++.   +++++.+.+.+.
T Consensus       263 --gAd~~aqDS~GNTVLH~lVi~~~~~My-~~~L~~ga~~l~~v~N~qgLTPLtLAakl---Gk~emf~~ile~  330 (782)
T KOG3676|consen  263 --GADPNAQDSNGNTVLHMLVIHFVTEMY-DLALELGANALEHVRNNQGLTPLTLAAKL---GKKEMFQHILER  330 (782)
T ss_pred             --CCCCCccccCCChHHHHHHHHHHHHHH-HHHHhcCCCccccccccCCCChHHHHHHh---hhHHHHHHHHHh
Confidence              999999999999999999998666666 899999999  999999999999999999   777888877765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.64  E-value=1.3e-15  Score=137.59  Aligned_cols=116  Identities=16%  Similarity=0.057  Sum_probs=97.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++|+|++...+..|.||||+|+..|+.+++++|++.    |+++|.+|.+|.||||+|++
T Consensus        71 ~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~----GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884         71 TNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSY----GADINIQTNDMVTPIELALM  146 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            58999999999999999999999999433456899999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      .++.+.+ .++.  |..   .+..+.+|.++..      ..++++.|.+++.
T Consensus       147 ~~~~~~~-~~~~--~~~---~~~~~~~~~~~~~------n~ei~~~Lish~v  186 (300)
T PHA02884        147 ICNNFLA-FMIC--DNE---ISNFYKHPKKILI------NFDILKILVSHFI  186 (300)
T ss_pred             hCChhHH-HHhc--CCc---ccccccChhhhhc------cHHHHHHHHHHHH
Confidence            8888776 5554  222   4666778888652      3578888887665

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.64  E-value=4.8e-16  Score=129.57  Aligned_cols=124  Identities=10%  Similarity=0.051  Sum_probs=114.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      ++|+.+++.+-+++.+.++.+.-   .+..|+.|.|||.||+.+|+.++|++|+++    |++++...+...|+|.+|+.
T Consensus       130 ~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~----GAdp~~lgk~resALsLAt~  202 (296)
T KOG0502|consen  130 WSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNS----GADPDALGKYRESALSLATR  202 (296)
T ss_pred             CChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHc----CCChhhhhhhhhhhHhHHhc
Confidence            57899999888888877766544   366799999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|..+++ ++|+++++|+|..|.+|-|||-+|.+.   ++.++++.|+..|+++.
T Consensus       203 ggytdiV-~lLL~r~vdVNvyDwNGgTpLlyAvrg---nhvkcve~Ll~sGAd~t  253 (296)
T KOG0502|consen  203 GGYTDIV-ELLLTREVDVNVYDWNGGTPLLYAVRG---NHVKCVESLLNSGADVT  253 (296)
T ss_pred             CChHHHH-HHHHhcCCCcceeccCCCceeeeeecC---ChHHHHHHHHhcCCCcc
Confidence            9999999 999999999999999999999999998   77899999999999887

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=2.2e-15  Score=112.16  Aligned_cols=86  Identities=27%  Similarity=0.204  Sum_probs=79.3

Q ss_pred             HHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCC
Q 020462           38 LHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYP  117 (326)
Q Consensus        38 Lh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~  117 (326)
                      ||+|+++|+.++++.|++.    +.+++.    |+||||+|+..|+.+++ ++|+++|++++.+|.+|+||||+|+..  
T Consensus         1 L~~A~~~~~~~~~~~ll~~----~~~~~~----~~~~l~~A~~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~L~~A~~~--   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK----GADINL----GNTALHYAAENGNLEIV-KLLLENGADINSQDKNGNTALHYAAEN--   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT----TSTTTS----SSBHHHHHHHTTTHHHH-HHHHHTTTCTT-BSTTSSBHHHHHHHT--
T ss_pred             CHHHHHcCCHHHHHHHHHC----cCCCCC----CCCHHHHHHHcCCHHHH-HHHHHhcccccccCCCCCCHHHHHHHc--
Confidence            7999999999999999998    777776    99999999999999999 999999999999999999999999999  


Q ss_pred             chHHHHHHHHHHcCCCCC
Q 020462          118 ELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus       118 ~~~~~i~~~L~~~g~~~~  135 (326)
                       +..+++++|.+.|.++.
T Consensus        70 -~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   70 -GNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             -THHHHHHHHHHTTT-TT
T ss_pred             -CCHHHHHHHHHcCCCCC
Confidence             77899999999998776

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02741 hypothetical protein; Provisional

Probab=99.63  E-value=1.4e-15  Score=127.24  Aligned_cols=93  Identities=14%  Similarity=0.114  Sum_probs=83.3

Q ss_pred             CcHHHHHHHcCc----HHHHHHHHHhCCcccccccC-CCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHH
Q 020462            1 MTALHLAADRGY----VGIVKAIISKNLECYELVDN-RGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa~~G~----~~iv~~Ll~~~~d~~~~~d~-~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpL   75 (326)
                      +||||+|+..|+    .++++.|+++++++ +.+|. +|+||||+|+.+++.+++++|++.   .|++++.+|.+|.|||
T Consensus        61 ~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~---~g~~~~~~n~~g~tpL  136 (169)
T PHA02741         61 QMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQ---PGIDLHFCNADNKSPF  136 (169)
T ss_pred             CcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCcCCCCCCCHH
Confidence            699999999999    58999999999998 66674 899999999999999999999973   2899999999999999


Q ss_pred             HHHHhcCCchHHHHHHhhcccCc
Q 020462           76 HVLAAVRPDEFDVRMIRKMQANF   98 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~~g~d~   98 (326)
                      |+|+..++.+++ ++|++.++..
T Consensus       137 ~~A~~~~~~~iv-~~L~~~~~~~  158 (169)
T PHA02741        137 ELAIDNEDVAMM-QILREIVATS  158 (169)
T ss_pred             HHHHHCCCHHHH-HHHHHHHHHh
Confidence            999999999998 9998876543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.61  E-value=6.8e-15  Score=126.98  Aligned_cols=122  Identities=27%  Similarity=0.257  Sum_probs=113.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCC-----hhHHHHHHhcCccccc---cccccCCCCC
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFY-----VEELGNLLENNPLVRS---LIIEGDVKGN   72 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~-----~~vv~~Ll~~~~~~g~---~in~~d~~G~   72 (326)
                      .+++|.++..|+.++++.++..+.++ +.+|..|.||||+|+.+++     .++++.|++.    |+   +.+.+|..|+
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~----g~~~~~~~~~~~~g~  148 (235)
T COG0666          74 RLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA----GADLDVNNLRDEDGN  148 (235)
T ss_pred             cCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc----CCCCCCccccCCCCC
Confidence            37899999999999999999999999 8899999999999999999     9999999999    88   7777799999


Q ss_pred             cHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           73 TPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        73 TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      ||||+|+..|+.+.+ ++|++.|++++.+|..|.|+++++...   ...++.+.+.+.+
T Consensus       149 tpl~~A~~~~~~~~~-~~ll~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIV-ELLLEAGADPNSRNSYGVTALDPAAKN---GRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHH-HHHHhcCCCCcccccCCCcchhhhccc---chHHHHHHHHhcC
Confidence            999999999999998 999999999999999999999999999   6667888777754

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.60  E-value=9.6e-16  Score=147.36  Aligned_cols=120  Identities=23%  Similarity=0.171  Sum_probs=113.6

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      |+||+||.+|+.++++.|+++.+-+ +..|.+|.+|||+|+.+|+.|+++.++.+    +..+|.+..+|.||||+|++.
T Consensus        51 Talhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~~e~vkmll~q----~d~~na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGNLEIVKMLLLQ----TDILNAVNIENETPLHLAAQH  125 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCcchHHHHHHhc----ccCCCcccccCcCccchhhhh
Confidence            8999999999999999999999887 77899999999999999999999999999    899999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                      |+.+.+ .+|+.+|+|+-.+|++++|++++|++-   +..++++.|.+.
T Consensus       126 gh~dvv-~~Ll~~~adp~i~nns~~t~ldlA~qf---gr~~Vvq~ll~~  170 (854)
T KOG0507|consen  126 GHLEVV-FYLLKKNADPFIRNNSKETVLDLASRF---GRAEVVQMLLQK  170 (854)
T ss_pred             cchHHH-HHHHhcCCCccccCcccccHHHHHHHh---hhhHHHHHHhhh
Confidence            999999 999999999999999999999999999   667888877765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.60  E-value=2.2e-15  Score=140.23  Aligned_cols=129  Identities=21%  Similarity=0.244  Sum_probs=113.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc---------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL---------------------   59 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~---------------------   59 (326)
                      .|+||-+|...+.++|++|+++++++ +..|..||||||.|+..|+..++++|+.....                     
T Consensus        74 lTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~  152 (527)
T KOG0505|consen   74 LTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATL  152 (527)
T ss_pred             chhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchh
Confidence            38999999999999999999999999 77899999999999999999999999876100                     


Q ss_pred             ----------------------------------ccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccC
Q 020462           60 ----------------------------------VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQN  105 (326)
Q Consensus        60 ----------------------------------~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g  105 (326)
                                                        .|...+.++..|-|.||.|+.+|..+.. ++|++.|.+++.+|.+|
T Consensus       153 ~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~-~lLl~ag~~~~~~D~dg  231 (527)
T KOG0505|consen  153 DVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVA-ALLLQAGYSVNIKDYDG  231 (527)
T ss_pred             HHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHH-HHHHHhccCcccccccC
Confidence                                              3566666777799999999999999998 99999999999999999


Q ss_pred             cCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462          106 VSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus       106 ~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      +||||.|+..   +..++.++|.++|++-
T Consensus       232 WtPlHAAA~W---g~~~~~elL~~~ga~~  257 (527)
T KOG0505|consen  232 WTPLHAAAHW---GQEDACELLVEHGADM  257 (527)
T ss_pred             CCcccHHHHh---hhHhHHHHHHHhhccc
Confidence            9999999999   5667777787777554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.59  E-value=4.6e-16  Score=134.53  Aligned_cols=120  Identities=18%  Similarity=0.161  Sum_probs=102.1

Q ss_pred             HHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchH
Q 020462            7 AADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEF   86 (326)
Q Consensus         7 Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~   86 (326)
                      -|+.|+.--|+.-++..-...+.-|..|.+|||+|++.|+..+++.|+..    |+.+|..+....||||+|+..|+.++
T Consensus         7 wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~r----garvn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR----GARVNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhc----ccccccccCCCCcchhhhhhcccHHH
Confidence            35566554555555444333477899999999999999999999999999    99999999988999999999999999


Q ss_pred             HHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           87 DVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        87 v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      + +.|++..+|+|+.|..|.||||+|+-.   +...|.+-|+..|+..
T Consensus        83 v-qkll~~kadvnavnehgntplhyacfw---gydqiaedli~~ga~v  126 (448)
T KOG0195|consen   83 V-QKLLSRKADVNAVNEHGNTPLHYACFW---GYDQIAEDLISCGAAV  126 (448)
T ss_pred             H-HHHHHHhcccchhhccCCCchhhhhhh---cHHHHHHHHHhcccee
Confidence            9 899999999999999999999999999   5667888888877643

>PHA02792 ankyrin-like protein; Provisional

Probab=99.55  E-value=9.9e-15  Score=142.00  Aligned_cols=125  Identities=18%  Similarity=0.110  Sum_probs=104.2

Q ss_pred             cHHHH-HHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHH-cCChhHHHHHHhcCcc--------------------
Q 020462            2 TALHL-AADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMV-SFYVEELGNLLENNPL--------------------   59 (326)
Q Consensus         2 TpLh~-Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~-~g~~~vv~~Ll~~~~~--------------------   59 (326)
                      +|+|+ |+.+|++|++++|+++|+|+ +..+..|.+|+|+|+. +++.|++++|++.+..                    
T Consensus        73 ~~~~~~~s~n~~lElvk~LI~~GAdv-N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~  151 (631)
T PHA02792         73 DIFEYLCSDNIDIELLKLLISKGLEI-NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAE  151 (631)
T ss_pred             cHHHHHHHhcccHHHHHHHHHcCCCc-ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccccc
Confidence            35654 45689999999999999999 6678889999999966 6999999999998210                    


Q ss_pred             ------------ccccccccCCCCCcHHHHHHhcC-------CchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchH
Q 020462           60 ------------VRSLIIEGDVKGNTPLHVLAAVR-------PDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELK  120 (326)
Q Consensus        60 ------------~g~~in~~d~~G~TpLH~Aa~~~-------~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~  120 (326)
                                  .+..+|.+|..|+||||+|+..+       +.+.+ ++|+++|++++.+|..|.||||+|..+.+ -.
T Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~-k~Li~~g~~~~~~d~~g~t~l~~~~~~~~-i~  229 (631)
T PHA02792        152 YYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVI-NYLISHEKEMRYYTYREHTTLYYYVDKCD-IK  229 (631)
T ss_pred             ccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHH-HHHHhCCCCcCccCCCCChHHHHHHHccc-ch
Confidence                        01235677888999999999998       78888 99999999999999999999999999852 26


Q ss_pred             HHHHHHHHH
Q 020462          121 EEIQKLSKD  129 (326)
Q Consensus       121 ~~i~~~L~~  129 (326)
                      .+++++|.+
T Consensus       230 ~ei~~~L~~  238 (631)
T PHA02792        230 REIFDALFD  238 (631)
T ss_pred             HHHHHHHHh
Confidence            678887776

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=1.9e-14  Score=144.33  Aligned_cols=105  Identities=19%  Similarity=0.067  Sum_probs=98.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcC
Q 020462            3 ALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVR   82 (326)
Q Consensus         3 pLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~   82 (326)
                      +||.|+..|+.+.++.|++.|+++ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+..|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~----Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEF----GADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHCC
Confidence            589999999999999999999998 77899999999999999999999999999    9999999999999999999999


Q ss_pred             CchHHHHHHhhc-------ccCcccccccCcCHHHhHh
Q 020462           83 PDEFDVRMIRKM-------QANFDAVNKQNVSVTNILL  113 (326)
Q Consensus        83 ~~~~v~~lLl~~-------g~d~~~~n~~g~TpL~~A~  113 (326)
                      +.+++ ++|+++       |++.+..+.+|.+|+....
T Consensus       160 ~~~iv-~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVV-QLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHH-HHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999 999988       8999999998888876554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.53  E-value=3e-14  Score=145.47  Aligned_cols=80  Identities=18%  Similarity=0.202  Sum_probs=74.2

Q ss_pred             CCCccHHHHHHHcCChhHHHHHHhcCccccccccccC--------------CCCCcHHHHHHhcCCchHHHHHHhhcccC
Q 020462           32 NRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGD--------------VKGNTPLHVLAAVRPDEFDVRMIRKMQAN   97 (326)
Q Consensus        32 ~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d--------------~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d   97 (326)
                      ..|.||||+|+.+|+.++++.|++.    |+++|.++              ..|.||||.|+..|+.+.+ ++|+++|+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~----GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv-~lLl~~gad  200 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLER----GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIV-ALLSEDPAD  200 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhC----CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHH-HHHhcCCcc
Confidence            4699999999999999999999999    99998764              3589999999999999999 999999999


Q ss_pred             cccccccCcCHHHhHhhCC
Q 020462           98 FDAVNKQNVSVTNILLNGY  116 (326)
Q Consensus        98 ~~~~n~~g~TpL~~A~~~~  116 (326)
                      ++.+|+.|+||||+|...+
T Consensus       201 in~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhh
Confidence            9999999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.53  E-value=6.5e-15  Score=137.11  Aligned_cols=110  Identities=27%  Similarity=0.303  Sum_probs=101.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccc-----------------------------------------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECY-----------------------------------------------------   27 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~-----------------------------------------------------   27 (326)
                      |||||.|+.-||..++++|+.+|++..                                                     
T Consensus       107 wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~  186 (527)
T KOG0505|consen  107 WTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN  186 (527)
T ss_pred             CCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh
Confidence            799999999999999999999987432                                                     


Q ss_pred             -----ccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCccccc
Q 020462           28 -----ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVN  102 (326)
Q Consensus        28 -----~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n  102 (326)
                           +.++..|.|.||+|+.+|..++.++|++.    |.+++.+|.+|+||||.|+..|+.+.+ ++|+++|++.+.++
T Consensus       187 ~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a----g~~~~~~D~dgWtPlHAAA~Wg~~~~~-elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  187 AGAELDARHARGATALHVAAANGYTEVAALLLQA----GYSVNIKDYDGWTPLHAAAHWGQEDAC-ELLVEHGADMDAKT  261 (527)
T ss_pred             ccccccccccccchHHHHHHhhhHHHHHHHHHHh----ccCcccccccCCCcccHHHHhhhHhHH-HHHHHhhcccchhh
Confidence                 33456699999999999999999999999    999999999999999999999999998 99999999999999


Q ss_pred             ccCcCHHHhHhhC
Q 020462          103 KQNVSVTNILLNG  115 (326)
Q Consensus       103 ~~g~TpL~~A~~~  115 (326)
                      ..|+||+++|...
T Consensus       262 ~~g~~p~dv~dee  274 (527)
T KOG0505|consen  262 KMGETPLDVADEE  274 (527)
T ss_pred             hcCCCCccchhhh
Confidence            9999999998764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=3.6e-14  Score=96.06  Aligned_cols=55  Identities=27%  Similarity=0.206  Sum_probs=18.9

Q ss_pred             HHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHH
Q 020462           20 ISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVL   78 (326)
Q Consensus        20 l~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~A   78 (326)
                      |++++...+.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~----g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN----GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC----T--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC----cCCCCCCcCCCCCHHHhC
Confidence            4444222245555555555555555555555555544    555555555555555554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=3.2e-14  Score=96.33  Aligned_cols=51  Identities=25%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             c-ccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhH
Q 020462           61 R-SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNIL  112 (326)
Q Consensus        61 g-~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A  112 (326)
                      | .++|.+|..|+||||+|+..|+.+++ ++|++.|+|++.+|++|+||+|+|
T Consensus         5 ~~~~~n~~d~~G~T~LH~A~~~g~~~~v-~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    5 GPADVNAQDKYGNTPLHWAARYGHSEVV-RLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -T--TT---TTS--HHHHHHHHT-HHHH-HHHHHCT--TT---TTS--HHHH-
T ss_pred             CcCCCcCcCCCCCcHHHHHHHcCcHHHH-HHHHHCcCCCCCCcCCCCCHHHhC
Confidence            5 89999999999999999999999999 999999999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=1.9e-13  Score=91.85  Aligned_cols=53  Identities=32%  Similarity=0.401  Sum_probs=33.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLL   54 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll   54 (326)
                      +||||+||+.|+.++++.|++++.|+ +.+|.+|+||||+|+.+|+.+++++|+
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            46777777777777777777777776 455777777777777777777777664

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=3e-13  Score=125.45  Aligned_cols=119  Identities=19%  Similarity=0.106  Sum_probs=102.5

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCC
Q 020462            4 LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRP   83 (326)
Q Consensus         4 Lh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~   83 (326)
                      |.-|+..|.+|+|+..+..-.|+ ...+..|-|+||-|++.||.++|++|++.    |+++|..|.+|+||||.|+.+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~----ganVNa~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEF----GANVNAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhc----CCcccCccCCCCchhhhhhhcCc
Confidence            56789999999999999998888 77799999999999999999999999999    99999999999999999999999


Q ss_pred             chHHHHHHhhcccCccccc-ccCcCHHHhHhhCCCchHHHHHHHHHH
Q 020462           84 DEFDVRMIRKMQANFDAVN-KQNVSVTNILLNGYPELKEEIQKLSKD  129 (326)
Q Consensus        84 ~~~v~~lLl~~g~d~~~~n-~~g~TpL~~A~~~~~~~~~~i~~~L~~  129 (326)
                      ..++ +.|.+.|+-+-+.. .++.||.+-+..... +...-.++|..
T Consensus       629 v~~c-kqLVe~GaavfAsTlSDmeTa~eKCee~ee-GY~~CsqyL~~  673 (752)
T KOG0515|consen  629 VPMC-KQLVESGAAVFASTLSDMETAAEKCEEMEE-GYDQCSQYLYG  673 (752)
T ss_pred             hHHH-HHHHhccceEEeeecccccchhhhcchhhh-hHHHHHHHHHH
Confidence            9998 99999998887765 688999887654422 34444555543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=3.3e-13  Score=90.68  Aligned_cols=54  Identities=31%  Similarity=0.300  Sum_probs=44.7

Q ss_pred             CccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHh
Q 020462           34 GWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIR   92 (326)
Q Consensus        34 G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl   92 (326)
                      |+||||+|++.|+.+++++|++.    |.++|.+|.+|+||||+|+..|+.+++ ++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~----~~din~~d~~g~t~lh~A~~~g~~~~~-~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH----GADINAQDEDGRTPLHYAAKNGNIDIV-KFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT----TSGTT-B-TTS--HHHHHHHTT-HHHH-HHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHccCHHHH-HHHC
Confidence            78999999999999999999998    999999999999999999999999998 8874

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=1.4e-12  Score=113.03  Aligned_cols=119  Identities=18%  Similarity=0.050  Sum_probs=108.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccc-cCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIE-GDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~-~d~~G~TpLH~Aa   79 (326)
                      +.||..+...|+.+-...|++.-.++ +.+|..|.++|..|+..|+.+.++.|++.    |+|+|. ++..+.||||.|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~----gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLEL----GADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHh----CCCcCcccccccccHHHHHH
Confidence            46899999999999999999886666 78899999999999999999999999999    999995 5788999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHH
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQK  125 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~  125 (326)
                      ..|+.+.. ++|++.|+.....|.-|+|+-++|+--|+.++.++++
T Consensus        88 LSGn~dvc-rllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   88 LSGNQDVC-RLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HcCCchHH-HHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            99999998 9999999999999999999999999888776666654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.40  E-value=6.1e-13  Score=129.62  Aligned_cols=125  Identities=22%  Similarity=0.225  Sum_probs=110.1

Q ss_pred             CcHHHHHHH---cCcHHHHHHHHHhCCcccccc----cCCCccHHHHHHHcCChhHHHHHHhcCcccccccccc------
Q 020462            1 MTALHLAAD---RGYVGIVKAIISKNLECYELV----DNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEG------   67 (326)
Q Consensus         1 ~TpLh~Aa~---~G~~~iv~~Ll~~~~d~~~~~----d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~------   67 (326)
                      +|.||.|..   .++.++++.|++..|...+..    .-.|+||||+|+.+.+.+.|++|++.    |+|++++      
T Consensus       144 ET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~----gADV~aRa~G~FF  219 (782)
T KOG3676|consen  144 ETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA----GADVHARACGAFF  219 (782)
T ss_pred             hhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc----CCchhhHhhcccc
Confidence            589999997   466799999999998754322    34699999999999999999999999    8888874      


Q ss_pred             ---CC--------------CCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           68 ---DV--------------KGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        68 ---d~--------------~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                         |.              .|..||-+||-.++++++ ++|+++|+|++++|.+|+|.||+....   ...++.+++++.
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eiv-rlLl~~gAd~~aqDS~GNTVLH~lVi~---~~~~My~~~L~~  295 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIV-RLLLAHGADPNAQDSNGNTVLHMLVIH---FVTEMYDLALEL  295 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHH-HHHHhcCCCCCccccCCChHHHHHHHH---HHHHHHHHHHhc
Confidence               22              377899999999999999 999999999999999999999999988   888999999999


Q ss_pred             CCC
Q 020462          131 GRG  133 (326)
Q Consensus       131 g~~  133 (326)
                      |++
T Consensus       296 ga~  298 (782)
T KOG3676|consen  296 GAN  298 (782)
T ss_pred             CCC
Confidence            988

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.40  E-value=4.1e-13  Score=129.53  Aligned_cols=125  Identities=22%  Similarity=0.188  Sum_probs=113.7

Q ss_pred             HHHHHHHcCcHHHHHHHHHhC------------CcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCC
Q 020462            3 ALHLAADRGYVGIVKAIISKN------------LECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVK   70 (326)
Q Consensus         3 pLh~Aa~~G~~~iv~~Ll~~~------------~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~   70 (326)
                      =|.-|++.|+.+.+..+|+..            ++-.+..|.+|.|.||.|+.+|+.+++++|++.    .+.++..|..
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~----ea~ldl~d~k   81 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY----EALLDLCDTK   81 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc----hhhhhhhhcc
Confidence            366799999999999999752            233477899999999999999999999999999    8999999999


Q ss_pred             CCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           71 GNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        71 G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |.+|||+|++.|+.+.+ ++++.++..+|..+..|.||||.++++   .+.+++.+|+.+|++|.
T Consensus        82 g~~plhlaaw~g~~e~v-kmll~q~d~~na~~~e~~tplhlaaqh---gh~dvv~~Ll~~~adp~  142 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIV-KMLLLQTDILNAVNIENETPLHLAAQH---GHLEVVFYLLKKNADPF  142 (854)
T ss_pred             CcceEEehhhcCcchHH-HHHHhcccCCCcccccCcCccchhhhh---cchHHHHHHHhcCCCcc
Confidence            99999999999999999 999999999999999999999999999   55589999999999886

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.38  E-value=4.1e-12  Score=99.18  Aligned_cols=96  Identities=25%  Similarity=0.245  Sum_probs=88.4

Q ss_pred             ccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHH
Q 020462           30 VDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVT  109 (326)
Q Consensus        30 ~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL  109 (326)
                      .|.+|.||||.|+..++.++++.|++.    +.+.+.+|..|.||+|.|+..++.+.+ ++|++.|++++..|..|.||+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~-~~ll~~~~~~~~~~~~~~~~l   77 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIV-KLLLEKGADVNARDKDGNTPL   77 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHH-HHHHHcCCCccccCCCCCCHH
Confidence            467899999999999999999999999    888899999999999999999999998 999999999999999999999


Q ss_pred             HhHhhCCCchHHHHHHHHHHcCCC
Q 020462          110 NILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus       110 ~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      |+|...   +..+++++|.+.+..
T Consensus        78 ~~a~~~---~~~~~~~~L~~~~~~   98 (126)
T cd00204          78 HLAARN---GNLDVVKLLLKHGAD   98 (126)
T ss_pred             HHHHHc---CcHHHHHHHHHcCCC
Confidence            999999   557999999987733

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.36  E-value=1.4e-12  Score=116.44  Aligned_cols=87  Identities=29%  Similarity=0.263  Sum_probs=81.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +|+|++|+.+|+.++|+.||..++|+ +.+|.+|.|+|+.|+++||.|++++||..   .++++...|.+|-|+|.+|-.
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~---p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAV---PSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhcc---CcccceeecCCCchhhhhHHh
Confidence            69999999999999999999999999 88899999999999999999999999988   378999999999999999999


Q ss_pred             cCCchHHHHHHh
Q 020462           81 VRPDEFDVRMIR   92 (326)
Q Consensus        81 ~~~~~~v~~lLl   92 (326)
                      .|+.++. -+|.
T Consensus       417 agh~eIa-~mlY  427 (452)
T KOG0514|consen  417 AGHREIA-VMLY  427 (452)
T ss_pred             cCchHHH-HHHH
Confidence            9999997 4443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.31  E-value=8e-12  Score=125.57  Aligned_cols=86  Identities=19%  Similarity=0.072  Sum_probs=81.8

Q ss_pred             HHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCC
Q 020462           37 FLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGY  116 (326)
Q Consensus        37 pLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~  116 (326)
                      .|+.|+.+|+.+.++.|++.    |+++|.+|.+|+||||+|+..|+.+++ ++|+++|+|++.+|.+|.||||+|... 
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~----Gadin~~d~~G~TpLh~Aa~~g~~eiv-~~LL~~Gadvn~~d~~G~TpLh~A~~~-  158 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG----GADPNCRDYDGRTPLHIACANGHVQVV-RVLLEFGADPTLLDKDGKTPLELAEEN-  158 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCcHHHHHHHCCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHC-
Confidence            48899999999999999999    999999999999999999999999999 999999999999999999999999998 


Q ss_pred             CchHHHHHHHHHHc
Q 020462          117 PELKEEIQKLSKDV  130 (326)
Q Consensus       117 ~~~~~~i~~~L~~~  130 (326)
                        +..+++++|+++
T Consensus       159 --g~~~iv~~Ll~~  170 (664)
T PTZ00322        159 --GFREVVQLLSRH  170 (664)
T ss_pred             --CcHHHHHHHHhC
Confidence              667899999887

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.27  E-value=1.3e-11  Score=106.43  Aligned_cols=90  Identities=24%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             CcHHHHHHHcCc-----HHHHHHHHHhCC--cccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCc
Q 020462            1 MTALHLAADRGY-----VGIVKAIISKNL--ECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNT   73 (326)
Q Consensus         1 ~TpLh~Aa~~G~-----~~iv~~Ll~~~~--d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~T   73 (326)
                      .||||+|+..|+     .++++.|++.++  +....+|.+|+||||+|+..|+.++++.|++.    |++++.++..|.|
T Consensus       107 ~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~----~~~~~~~~~~g~t  182 (235)
T COG0666         107 DTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA----GADPNSRNSYGVT  182 (235)
T ss_pred             CcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc----CCCCcccccCCCc
Confidence            489999999999     999999999999  67688899999999999999999999999999    9999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhhcc
Q 020462           74 PLHVLAAVRPDEFDVRMIRKMQ   95 (326)
Q Consensus        74 pLH~Aa~~~~~~~v~~lLl~~g   95 (326)
                      ++|.|+..++.+.+ ..+.+.+
T Consensus       183 ~l~~a~~~~~~~~~-~~l~~~~  203 (235)
T COG0666         183 ALDPAAKNGRIELV-KLLLDKG  203 (235)
T ss_pred             chhhhcccchHHHH-HHHHhcC
Confidence            99999999999998 8887765

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.24  E-value=6e-12  Score=125.39  Aligned_cols=126  Identities=17%  Similarity=0.117  Sum_probs=117.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcccccccccc-CCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEG-DVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~-d~~G~TpLH~Aa   79 (326)
                      +|+|-.||..||-|.+++|+.+|++. +.+|+.|.+||.+|+..||..+|+.|+++    .++++.+ |+.+.|+|-+||
T Consensus       758 ~t~LT~acaggh~e~vellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~----ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKA----HADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhh----hhhhhhhcccccCceEEEec
Confidence            58999999999999999999999998 88999999999999999999999999999    8888865 889999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .-|..+.+ ++|+..|++...+|-...|||.+|...   +..+|++.|+..|+...
T Consensus       833 sggr~~vv-elLl~~gankehrnvsDytPlsla~Sg---gy~~iI~~llS~GseIn  884 (2131)
T KOG4369|consen  833 SGGRTRVV-ELLLNAGANKEHRNVSDYTPLSLARSG---GYTKIIHALLSSGSEIN  884 (2131)
T ss_pred             CCCcchHH-HHHHHhhccccccchhhcCchhhhcCc---chHHHHHHHhhcccccc
Confidence            99999999 999999999999999999999999888   77899999999885443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.22  E-value=1.7e-11  Score=88.82  Aligned_cols=90  Identities=16%  Similarity=0.097  Sum_probs=81.4

Q ss_pred             HHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCC
Q 020462           37 FLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGY  116 (326)
Q Consensus        37 pLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~  116 (326)
                      -..|++++|..+-|+-.+..    |.++|.+- .|+||||+|+..|+.+++ ++|+..|++++.+|+.|-|||--|... 
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~----g~nVn~~~-ggR~plhyAAD~GQl~il-efli~iGA~i~~kDKygITPLLsAvwE-   77 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE----GLNVNEIY-GGRTPLHYAADYGQLSIL-EFLISIGANIQDKDKYGITPLLSAVWE-   77 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc----cccHHHHh-CCcccchHhhhcchHHHH-HHHHHhccccCCccccCCcHHHHHHHH-
Confidence            46789999999999988888    88888765 899999999999999999 999999999999999999999999988 


Q ss_pred             CchHHHHHHHHHHcCCCCC
Q 020462          117 PELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus       117 ~~~~~~i~~~L~~~g~~~~  135 (326)
                        ++.+-+++|++.|++..
T Consensus        78 --GH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   78 --GHRDCVKLLLQNGADRT   94 (117)
T ss_pred             --hhHHHHHHHHHcCcccc
Confidence              66788999999998765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.13  E-value=1.6e-10  Score=100.39  Aligned_cols=86  Identities=20%  Similarity=0.181  Sum_probs=81.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +|||..|+.+|+.+.++.|++.|+|++...+..+.||||.|+..|+.++.+.|++.    |+.....+.-|+|+-.+|+-
T Consensus        46 Ms~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlllda----Ga~~~~vNsvgrTAaqmAAF  121 (396)
T KOG1710|consen   46 MSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDA----GARMYLVNSVGRTAAQMAAF  121 (396)
T ss_pred             ccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhc----cCccccccchhhhHHHHHHH
Confidence            68999999999999999999999999888899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHH
Q 020462           81 VRPDEFDVRMI   91 (326)
Q Consensus        81 ~~~~~~v~~lL   91 (326)
                      .|+.+++ ..+
T Consensus       122 VG~H~CV-~iI  131 (396)
T KOG1710|consen  122 VGHHECV-AII  131 (396)
T ss_pred             hcchHHH-HHH
Confidence            9999998 543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.94  E-value=5e-10  Score=109.20  Aligned_cols=95  Identities=17%  Similarity=0.090  Sum_probs=86.6

Q ss_pred             HHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCC-CCcHHHHHHhcCCchHHHHHHhh
Q 020462           15 IVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVK-GNTPLHVLAAVRPDEFDVRMIRK   93 (326)
Q Consensus        15 iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~-G~TpLH~Aa~~~~~~~v~~lLl~   93 (326)
                      +-.++-+.|-+..+..|..|+|+||+|+..++.+++++|+.+    |.+++.+|.+ |.||||.|...|+.+++ -+|+.
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh----Gidv~vqD~ESG~taLHRaiyyG~idca-~lLL~  107 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH----GIDVFVQDEESGYTALHRAIYYGNIDCA-SLLLS  107 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc----CceeeeccccccchHhhHhhhhchHHHH-HHHHh
Confidence            334455667777899999999999999999999999999999    9999999975 89999999999999999 89999


Q ss_pred             cccCcccccccCcCHHHhHhh
Q 020462           94 MQANFDAVNKQNVSVTNILLN  114 (326)
Q Consensus        94 ~g~d~~~~n~~g~TpL~~A~~  114 (326)
                      +|+.+.++|++|..||+...+
T Consensus       108 ~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 KGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cCCceEEecccCCCHHHHHhh
Confidence            999999999999999998876

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.87  E-value=1.3e-08  Score=94.31  Aligned_cols=84  Identities=21%  Similarity=0.120  Sum_probs=73.6

Q ss_pred             ccCCCcc------HHHHHHHcCChhHHHHHHhcCccccccccccC-CCCCcHHHHHHhcCCchHHHHHHhhcccCccccc
Q 020462           30 VDNRGWN------FLHYAMVSFYVEELGNLLENNPLVRSLIIEGD-VKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVN  102 (326)
Q Consensus        30 ~d~~G~t------pLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d-~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n  102 (326)
                      +|.+|.+      -||..++.|+.|+.--|+..    |++.|--+ ..|+||||.|++.|+...+ ++|.-.|+|++..|
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l----GA~~N~~hpekg~TpLHvAAk~Gq~~Q~-ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL----GAQANFFHPEKGNTPLHVAAKAGQILQA-ELLAVYGADPGAQD  197 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc----ccccCCCCcccCCchhHHHHhccchhhh-hHHhhccCCCCCCC
Confidence            4666655      48999999999988888888    99999775 4699999999999999998 99999999999999


Q ss_pred             ccCcCHHHhHhhCCCc
Q 020462          103 KQNVSVTNILLNGYPE  118 (326)
Q Consensus       103 ~~g~TpL~~A~~~~~~  118 (326)
                      .+|+||+++|...||.
T Consensus       198 ~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHH  213 (669)
T ss_pred             CCCCcHHHHHHhcCch
Confidence            9999999999998776

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.87  E-value=3.8e-09  Score=98.59  Aligned_cols=92  Identities=14%  Similarity=0.095  Sum_probs=82.0

Q ss_pred             cHHHH---HHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhH
Q 020462           36 NFLHY---AMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNIL  112 (326)
Q Consensus        36 tpLh~---A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A  112 (326)
                      +||-+   |+..|..++|+..+..    -.|....+.+|-|+||-|.-.||.++| ++|++.|+|+|..|.+|+||||.|
T Consensus       549 nPLaLLLDaaLeGEldlVq~~i~e----v~DpSqpNdEGITaLHNAiCaghyeIV-kFLi~~ganVNa~DSdGWTPLHCA  623 (752)
T KOG0515|consen  549 NPLALLLDAALEGELDLVQRIIYE----VTDPSQPNDEGITALHNAICAGHYEIV-KFLIEFGANVNAADSDGWTPLHCA  623 (752)
T ss_pred             chHHHHHhhhhcchHHHHHHHHHh----hcCCCCCCccchhHHhhhhhcchhHHH-HHHHhcCCcccCccCCCCchhhhh
Confidence            56543   8899999999999987    678888899999999999999999999 999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHcCCCCC
Q 020462          113 LNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus       113 ~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      +.-   +...+.+.|.+.|+...
T Consensus       624 ASC---Nnv~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  624 ASC---NNVPMCKQLVESGAAVF  643 (752)
T ss_pred             hhc---CchHHHHHHHhccceEE
Confidence            988   66788999999886543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.86  E-value=2e-09  Score=99.30  Aligned_cols=95  Identities=17%  Similarity=0.070  Sum_probs=78.3

Q ss_pred             cccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhh-cccCcccccccCcC
Q 020462           29 LVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVS  107 (326)
Q Consensus        29 ~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~T  107 (326)
                      .++.++..++.+|++.|....++.+.-.    |.|++.+|.+.+|+||.||..|+.+.+ ++|++ .++|++.+|..|+|
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~----g~D~~~~DyD~RTaLHvAAaEG~v~v~-kfl~~~~kv~~~~kDRw~rt  575 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQ----GMDLETKDYDDRTALHVAAAEGHVEVV-KFLLNACKVDPDPKDRWGRT  575 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHh----cccccccccccchhheeecccCceeHH-HHHHHHHcCCCChhhccCCC
Confidence            3456677888999999998888887777    889999999999999999999999888 88877 57899999999999


Q ss_pred             HHHhHhhCCCchHHHHHHHHHHcC
Q 020462          108 VTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus       108 pL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      |||-|..-   .+.+++++|.+..
T Consensus       576 PlDdA~~F---~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  576 PLDDAKHF---KHKEVVKLLEEAQ  596 (622)
T ss_pred             cchHhHhc---CcHHHHHHHHHHh
Confidence            99988877   5567777777654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=1.2e-08  Score=95.94  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=102.1

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCC
Q 020462            4 LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRP   83 (326)
Q Consensus         4 Lh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~   83 (326)
                      +..|+..+++--+++.-..|.+. -.++.+..+.||+|+..|+-|+|++++++.|  ...+++.|..|.|+||.|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhcc
Confidence            45677888877777777788887 6679999999999999999999999999933  36788999999999999999999


Q ss_pred             chHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHH
Q 020462           84 DEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKD  129 (326)
Q Consensus        84 ~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~  129 (326)
                      ..+. ++|.+.|+.+...|..|.||-+-|.+.++.   ++..+|..
T Consensus       947 r~vc-~~lvdagasl~ktd~kg~tp~eraqqa~d~---dlaayle~  988 (1004)
T KOG0782|consen  947 RAVC-QLLVDAGASLRKTDSKGKTPQERAQQAGDP---DLAAYLES  988 (1004)
T ss_pred             hHHH-HHHHhcchhheecccCCCChHHHHHhcCCc---hHHHHHhh
Confidence            8887 999999999999999999999999988544   56666654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.80  E-value=4.2e-09  Score=105.62  Aligned_cols=126  Identities=13%  Similarity=0.072  Sum_probs=112.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      +||.+|+-.||..+|+.|+++.+++-...|+.+.|+|.+||..|+.++|+.|+..    |++-..++....|||.+|..-
T Consensus       792 ~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~----gankehrnvsDytPlsla~Sg  867 (2131)
T KOG4369|consen  792 VPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA----GANKEHRNVSDYTPLSLARSG  867 (2131)
T ss_pred             hhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHh----hccccccchhhcCchhhhcCc
Confidence            7899999999999999999999999778899999999999999999999999999    888888999999999999999


Q ss_pred             CCchHHHHHHhhcccCccccc--ccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVN--KQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n--~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |..+++ ..|+..|.++|.+.  +.|-.||.+|..++   +.+..+.|++.|.+..
T Consensus       868 gy~~iI-~~llS~GseInSrtgSklgisPLmlatmng---h~~at~~ll~~gsdiN  919 (2131)
T KOG4369|consen  868 GYTKII-HALLSSGSEINSRTGSKLGISPLMLATMNG---HQAATLSLLQPGSDIN  919 (2131)
T ss_pred             chHHHH-HHHhhcccccccccccccCcchhhhhhhcc---ccHHHHHHhcccchhc
Confidence            999998 99999998888765  67889999999995   4467777777776554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.71  E-value=4.5e-08  Score=90.85  Aligned_cols=80  Identities=18%  Similarity=0.091  Sum_probs=74.8

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCC
Q 020462            4 LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRP   83 (326)
Q Consensus         4 Lh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~   83 (326)
                      ||-.++.|+.+..-.||..|++++..--+.|.||||+|++.|+..-+++|+-.    |+|++.+|.+|.||+-+|-..|+
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY----GAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY----GADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc----cCCCCCCCCCCCcHHHHHHhcCc
Confidence            89999999999999999999999666667899999999999999999999988    99999999999999999999999


Q ss_pred             chHH
Q 020462           84 DEFD   87 (326)
Q Consensus        84 ~~~v   87 (326)
                      .+..
T Consensus       213 ~~la  216 (669)
T KOG0818|consen  213 HELA  216 (669)
T ss_pred             hHHH
Confidence            8876

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=2.6e-08  Score=93.78  Aligned_cols=88  Identities=23%  Similarity=0.252  Sum_probs=81.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCc-ccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            2 TALHLAADRGYVGIVKAIISKNLE-CYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d-~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      |-||+|++.|+-|+|+++++++|. +.+..|+.|.|+||-|+..++..++++|++.    |+.+...|..|.||-..|-+
T Consensus       901 sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda----gasl~ktd~kg~tp~eraqq  976 (1004)
T KOG0782|consen  901 SLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA----GASLRKTDSKGKTPQERAQQ  976 (1004)
T ss_pred             hHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc----chhheecccCCCChHHHHHh
Confidence            679999999999999999999986 4577799999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhc
Q 020462           81 VRPDEFDVRMIRKM   94 (326)
Q Consensus        81 ~~~~~~v~~lLl~~   94 (326)
                      .|+.+.. .+|-++
T Consensus       977 a~d~dla-ayle~r  989 (1004)
T KOG0782|consen  977 AGDPDLA-AYLESR  989 (1004)
T ss_pred             cCCchHH-HHHhhh
Confidence            9999998 777554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.69  E-value=2e-08  Score=92.75  Aligned_cols=87  Identities=21%  Similarity=0.198  Sum_probs=81.7

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcC
Q 020462            3 ALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVR   82 (326)
Q Consensus         3 pLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~   82 (326)
                      ++.+||+.|++..++.+.-.+.|. +.+|.+.+|+||+|+..|+.+++++|++.   .+.+.+.+|.+|+|||--|...+
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHH---HcCCCChhhccCCCcchHhHhcC
Confidence            578999999999999999999998 88899999999999999999999999988   57899999999999999999999


Q ss_pred             CchHHHHHHhhc
Q 020462           83 PDEFDVRMIRKM   94 (326)
Q Consensus        83 ~~~~v~~lLl~~   94 (326)
                      +.+++ ++|.+.
T Consensus       585 h~~v~-k~L~~~  595 (622)
T KOG0506|consen  585 HKEVV-KLLEEA  595 (622)
T ss_pred             cHHHH-HHHHHH
Confidence            99998 888664

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.66  E-value=2.3e-08  Score=59.68  Aligned_cols=31  Identities=32%  Similarity=0.472  Sum_probs=14.8

Q ss_pred             CCcHHHHHHhcCCchHHHHHHhhcccCccccc
Q 020462           71 GNTPLHVLAAVRPDEFDVRMIRKMQANFDAVN  102 (326)
Q Consensus        71 G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n  102 (326)
                      |+||||+|+..|+.+++ ++|+++|+|++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v-~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIV-KLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHH-HHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHH-HHHHHCcCCCCCCC
Confidence            44444444444444444 44444444444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.61  E-value=3.4e-08  Score=57.43  Aligned_cols=23  Identities=35%  Similarity=0.303  Sum_probs=13.0

Q ss_pred             CccHHHHHHHcCChhHHHHHHhc
Q 020462           34 GWNFLHYAMVSFYVEELGNLLEN   56 (326)
Q Consensus        34 G~tpLh~A~~~g~~~vv~~Ll~~   56 (326)
                      |+||||+|+.+|+.|++++|++.
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~   24 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEH   24 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHc
Confidence            55555555555555555555555

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=5.7e-08  Score=56.48  Aligned_cols=28  Identities=32%  Similarity=0.445  Sum_probs=13.6

Q ss_pred             CCcHHHHHHhcCCchHHHHHHhhcccCcc
Q 020462           71 GNTPLHVLAAVRPDEFDVRMIRKMQANFD   99 (326)
Q Consensus        71 G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~   99 (326)
                      |+||||+|++.|+.+.+ ++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v-~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIV-KYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHH-HHHHHcCCCCC
Confidence            44455555444444444 44444444443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.58  E-value=7.3e-08  Score=57.45  Aligned_cols=33  Identities=27%  Similarity=0.153  Sum_probs=24.3

Q ss_pred             CCccHHHHHHHcCChhHHHHHHhcCccccccccccCC
Q 020462           33 RGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDV   69 (326)
Q Consensus        33 ~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~   69 (326)
                      +|+||||+|+.+|+.+++++|++.    |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~----ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH----GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT----TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC----cCCCCCCCC
Confidence            477777777777777777777777    777777663

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=1.8e-07  Score=87.81  Aligned_cols=85  Identities=20%  Similarity=0.168  Sum_probs=69.8

Q ss_pred             HHHHHHHcCcHHHHHH-HHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            3 ALHLAADRGYVGIVKA-IISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         3 pLh~Aa~~G~~~iv~~-Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      |+|+++...+.+-... +...-...++.+|..|+||||+|+.-|+.+.++.|+..    |+++..+|++|++|||.|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a----~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA----GADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc----CCCccccccccccHHHHHHHc
Confidence            4899998877765555 33333445588899999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHH
Q 020462           82 RPDEFDVRMI   91 (326)
Q Consensus        82 ~~~~~v~~lL   91 (326)
                      |+..++..+|
T Consensus        99 g~~q~i~~vl  108 (560)
T KOG0522|consen   99 GNEQIITEVL  108 (560)
T ss_pred             CCHHHHHHHH
Confidence            9988773343

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=1.9e-07  Score=87.67  Aligned_cols=80  Identities=25%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             cHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhC
Q 020462           36 NFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        36 tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~  115 (326)
                      -|+|+++.....+-...++.. . ....++.+|..|+||||+|+..|+.+.+ +.|+..|+|+..+|++|++|||.|...
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~-~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a-~~Ll~a~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLA-K-VSLVIDRRDPPGRTPLHLAVRLGHVEAA-RILLSAGADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhh-h-hhceeccccCCCCccHHHHHHhcCHHHH-HHHHhcCCCccccccccccHHHHHHHc
Confidence            359999988877666554443 1 3678999999999999999999999999 999999999999999999999999998


Q ss_pred             CCc
Q 020462          116 YPE  118 (326)
Q Consensus       116 ~~~  118 (326)
                      ++.
T Consensus        99 g~~  101 (560)
T KOG0522|consen   99 GNE  101 (560)
T ss_pred             CCH
Confidence            765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.46  E-value=1.2e-07  Score=92.91  Aligned_cols=78  Identities=22%  Similarity=0.317  Sum_probs=71.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +|+||+|+..|..++++.|+++|.|+.-.-.+.|+||||-|+.+|+.+++..|+++    |.-+..+|++|..||..-++
T Consensus        53 R~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~----g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   53 RTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK----GRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc----CCceEEecccCCCHHHHHhh
Confidence            68999999999999999999999998444344799999999999999999999999    99999999999999999887


Q ss_pred             cC
Q 020462           81 VR   82 (326)
Q Consensus        81 ~~   82 (326)
                      ..
T Consensus       129 ~~  130 (1267)
T KOG0783|consen  129 VL  130 (1267)
T ss_pred             cc
Confidence            43

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.45  E-value=4.5e-07  Score=85.79  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=53.7

Q ss_pred             HHHHHHcCChhHHHHHHhcCccccccccc--cCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhC
Q 020462           38 LHYAMVSFYVEELGNLLENNPLVRSLIIE--GDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        38 Lh~A~~~g~~~vv~~Ll~~~~~~g~~in~--~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~  115 (326)
                      |.-|+.......+-.|+.+..  ...+|.  -+.+|+|+||+||+.|+.... ++|+-+|+|+..+|.+|+|||.||.+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~--~~e~~~t~~~~~grt~LHLa~~~gnVvl~-QLLiWyg~dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGS--REEVNETCGEGDGRTALHLAARKGNVVLA-QLLIWYGVDVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccC--chhhhccccCCCCcchhhhhhhhcchhHH-HHHHHhCccceecccCCchhhhhHhhc
Confidence            444555555555555665511  112222  245566777777777777666 677777777777777777777777766


Q ss_pred             CCchHHHHHHHHHHcCCC
Q 020462          116 YPELKEEIQKLSKDVGRG  133 (326)
Q Consensus       116 ~~~~~~~i~~~L~~~g~~  133 (326)
                         +..+.++.|+.+|..
T Consensus       705 ---~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  705 ---GSQECIDVLLQYGCP  719 (749)
T ss_pred             ---ccHHHHHHHHHcCCC
Confidence               444556666665543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.37  E-value=8.5e-07  Score=83.99  Aligned_cols=91  Identities=15%  Similarity=0.050  Sum_probs=78.6

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcc--cc-cccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            4 LHLAADRGYVGIVKAIISKNLEC--YE-LVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         4 Lh~Aa~~G~~~iv~~Ll~~~~d~--~~-~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      |..|+...++..+-.||.+|...  ++ .-+.+|+|+||+|+..|+....++|+..    |.|+..+|..|+|+|.+|-+
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy----g~dv~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY----GVDVMARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh----CccceecccCCchhhhhHhh
Confidence            56677888899999999988642  22 3456789999999999999999999988    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcc
Q 020462           81 VRPDEFDVRMIRKMQANFD   99 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~   99 (326)
                      .|..+++ ..|+.+|+..+
T Consensus       704 a~sqec~-d~llq~gcp~e  721 (749)
T KOG0705|consen  704 AGSQECI-DVLLQYGCPDE  721 (749)
T ss_pred             cccHHHH-HHHHHcCCCcc
Confidence            9999999 99999986543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.26  E-value=7.7e-07  Score=90.03  Aligned_cols=80  Identities=24%  Similarity=0.206  Sum_probs=75.8

Q ss_pred             cCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHH
Q 020462           31 DNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTN  110 (326)
Q Consensus        31 d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~  110 (326)
                      -..|.++||.|+..+....+++|++.    |+++|.+|..|+||||.+...|+...+ .+++++|++.++.|.+|++|++
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~----ga~vn~~d~~g~~plh~~~~~g~~~~~-~~ll~~~a~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQN----GADVNALDSKGRTPLHHATASGHTSIA-CLLLKRGADPNAFDPDGKLPLD  727 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhc----CCcchhhhccCCCcchhhhhhcccchh-hhhccccccccccCccCcchhh
Confidence            34579999999999999999999999    999999999999999999999999998 8889999999999999999999


Q ss_pred             hHhhC
Q 020462          111 ILLNG  115 (326)
Q Consensus       111 ~A~~~  115 (326)
                      +|...
T Consensus       728 ~a~~~  732 (785)
T KOG0521|consen  728 IAMEA  732 (785)
T ss_pred             HHhhh
Confidence            99777

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.25  E-value=8.5e-07  Score=89.53  Aligned_cols=112  Identities=18%  Similarity=0.120  Sum_probs=90.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~-~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      ||-+|.++..|+.-.++.+++- +... ...|.+|...+|. |..++.+..-++...   .|..++.+|..|+||||+|+
T Consensus       575 ~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~---~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  575 MLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISA---DGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             hHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEee---cccccccccCCCCcccchHh
Confidence            5679999999999999999986 5554 4568889999999 555666776666655   48899999999999999999


Q ss_pred             hcCCchHHHHHHhhcccCc------ccccccCcCHHHhHhhCCCc
Q 020462           80 AVRPDEFDVRMIRKMQANF------DAVNKQNVSVTNILLNGYPE  118 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~------~~~n~~g~TpL~~A~~~~~~  118 (326)
                      ..|+..++ .-|.+.|++.      ...+-.|.|+-++|..+++.
T Consensus       650 ~~G~e~l~-a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  650 FRGREKLV-ASLIELGADPGAVTDPSPETPGGKTAADLARANGHK  693 (975)
T ss_pred             hcCHHHHH-HHHHHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence            99999988 8888766543      33455799999999988766

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.15  E-value=2.7e-06  Score=86.09  Aligned_cols=82  Identities=22%  Similarity=0.238  Sum_probs=77.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .|+||.|+..|..-.++.|++.++++ +.+|..|+||||.+...|+...+..++++    |++.+..|.+|.+||+.|..
T Consensus       657 ~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~----~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  657 CSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKR----GADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             cchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccc----cccccccCccCcchhhHHhh
Confidence            38999999999999999999999997 88899999999999999999999999998    99999999999999999988


Q ss_pred             cCCchHH
Q 020462           81 VRPDEFD   87 (326)
Q Consensus        81 ~~~~~~v   87 (326)
                      ..+.+.+
T Consensus       732 ~~~~d~~  738 (785)
T KOG0521|consen  732 AANADIV  738 (785)
T ss_pred             hccccHH
Confidence            7777775

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.90  E-value=2.7e-05  Score=70.67  Aligned_cols=71  Identities=23%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            4 LHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         4 Lh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      |..||+.|+++.|+.|++.|.++ +.+|.....||.+|+..||.+++++|+++    |+....-..+|.-. |+++.
T Consensus        40 lceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLen----GAiC~rdtf~G~RC-~YgaL  110 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLEN----GAICSRDTFDGDRC-HYGAL  110 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHc----CCcccccccCcchh-hhhhh
Confidence            68999999999999999999998 88899999999999999999999999999    88777666666554 34443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.81  E-value=4.7e-05  Score=62.93  Aligned_cols=62  Identities=16%  Similarity=0.128  Sum_probs=46.0

Q ss_pred             ccccCCCccHHHHHHHcCChhHHHHHHhcCcccc-ccccccCCCCCcHHHHHHhcCCchHHHHHHhhc
Q 020462           28 ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR-SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKM   94 (326)
Q Consensus        28 ~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g-~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~   94 (326)
                      +.+|..|||+|+.|+..|+.+.+.+|+..    | +.+...|..|++++.+|-+.|..+.+ ..|.+.
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgr----g~a~vgv~d~ssldaaqlaek~g~~~fv-h~lfe~   68 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGR----GVAFVGVTDESSLDAAQLAEKGGAQAFV-HSLFEN   68 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhcc----CcccccccccccchHHHHHHhcChHHHH-HHHHHH
Confidence            66777777777777777777777777777    6 67777777777777777777777776 666554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.77  E-value=6e-05  Score=75.01  Aligned_cols=114  Identities=18%  Similarity=0.056  Sum_probs=88.4

Q ss_pred             HHHHHcCcHHHHHHHHHhCCc---ccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            5 HLAADRGYVGIVKAIISKNLE---CYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         5 h~Aa~~G~~~iv~~Ll~~~~d---~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ..||++|+.-.|+..++....   ..+.+|.-|+++||.|+.+.+.|+.++|++.    +...       ..+|-+|...
T Consensus        30 L~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~----~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   30 LLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT----SSEE-------GDALLLAIAV   98 (822)
T ss_pred             HHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC----cccc-------chHHHHHHHH
Confidence            468999999999999987665   2377899999999999999999999999988    3222       3477778888


Q ss_pred             CCchHHHHHHhhcccCc----------ccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           82 RPDEFDVRMIRKMQANF----------DAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~----------~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      |..+.+ ++++.+....          ...-..+.||+.+|+..   ++-||++.|++.|+.
T Consensus        99 ~~v~~V-E~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~---NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   99 GSVPLV-ELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHL---NNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHH-HHHHhcccccchhccccccCcccCCCCccHHHHHHHh---cchHHHHHHHHcCCC
Confidence            888888 8777653222          12334567899999888   667899988887754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.73  E-value=0.0001  Score=66.99  Aligned_cols=70  Identities=13%  Similarity=0.016  Sum_probs=62.2

Q ss_pred             cHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHH
Q 020462           36 NFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTN  110 (326)
Q Consensus        36 tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~  110 (326)
                      --|..||+.|..+.+++|++.    |.++|.+|...+.||.+|+..||.+.+ ++|+++|+-...-..+|...+.
T Consensus        38 ~elceacR~GD~d~v~~LVet----gvnVN~vD~fD~spL~lAsLcGHe~vv-klLLenGAiC~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET----GVNVNAVDRFDSSPLYLASLCGHEDVV-KLLLENGAICSRDTFDGDRCHY  107 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh----CCCcchhhcccccHHHHHHHcCcHHHH-HHHHHcCCcccccccCcchhhh
Confidence            358899999999999999999    999999999999999999999999999 9999999876665667765543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.67  E-value=8.2e-05  Score=61.57  Aligned_cols=55  Identities=16%  Similarity=0.080  Sum_probs=36.3

Q ss_pred             ccccccCCCCCcHHHHHHhcCCchHHHHHHhhcc-cCcccccccCcCHHHhHhhCCC
Q 020462           62 SLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQ-ANFDAVNKQNVSVTNILLNGYP  117 (326)
Q Consensus        62 ~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g-~d~~~~n~~g~TpL~~A~~~~~  117 (326)
                      .++|.+|..|+|||+.|+..|+.+.+ .||+.+| +++...|..|.++..+|.+.++
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eav-syllgrg~a~vgv~d~ssldaaqlaek~g~   58 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAV-SYLLGRGVAFVGVTDESSLDAAQLAEKGGA   58 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHH-HHHhccCcccccccccccchHHHHHHhcCh
Confidence            45666666666666666666666666 6666666 6666666666666666666633

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.48  E-value=8.4e-05  Score=75.48  Aligned_cols=101  Identities=18%  Similarity=0.114  Sum_probs=79.9

Q ss_pred             ccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcC
Q 020462           28 ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVS  107 (326)
Q Consensus        28 ~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~T  107 (326)
                      ....-.|++.+|+++..++.-.++.+++.   .+...+..|.+|...+|+++..| .+..+.+..-.|..++.+|..|+|
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hfca~lg-~ewA~ll~~~~~~ai~i~D~~G~t  643 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHFCAALG-YEWAFLPISADGVAIDIRDRNGWT  643 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcc---cccCchhhcccCCChhhHhhhcC-CceeEEEEeecccccccccCCCCc
Confidence            44566799999999999999888888885   35666777888999999966544 555424445688999999999999


Q ss_pred             HHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462          108 VTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus       108 pL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |||+|...   +++.++..|.+.|+.+.
T Consensus       644 pL~wAa~~---G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  644 PLHWAAFR---GREKLVASLIELGADPG  668 (975)
T ss_pred             ccchHhhc---CHHHHHHHHHHhccccc
Confidence            99999999   66688888887776554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.16  E-value=0.00068  Score=67.75  Aligned_cols=89  Identities=18%  Similarity=0.048  Sum_probs=70.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc--cc--c---cccccCCCCCc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL--VR--S---LIIEGDVKGNT   73 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~--~g--~---~in~~d~~G~T   73 (326)
                      +++||.|..+.+.|+++.|+++..+.        ..+|.+|+..|..+.|+.++.+ +.  .+  .   .-...-..+-|
T Consensus        63 r~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~-~~~~~~~~~~~d~~~~~ft~dit  133 (822)
T KOG3609|consen   63 RLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVH-FVDAPYLERSGDANSPHFTPDIT  133 (822)
T ss_pred             hhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhc-ccccchhccccccCcccCCCCcc
Confidence            47899999999999999999887554        4579999999999999999987 33  01  1   01112234679


Q ss_pred             HHHHHHhcCCchHHHHHHhhcccCcc
Q 020462           74 PLHVLAAVRPDEFDVRMIRKMQANFD   99 (326)
Q Consensus        74 pLH~Aa~~~~~~~v~~lLl~~g~d~~   99 (326)
                      ||.+||..++.+++ ++|+.+|+++.
T Consensus       134 PliLAAh~NnyEil-~~Ll~kg~~i~  158 (822)
T KOG3609|consen  134 PLMLAAHLNNFEIL-QCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHhcchHHH-HHHHHcCCCCC
Confidence            99999999999999 99999987653

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.70  E-value=0.0028  Score=59.85  Aligned_cols=63  Identities=16%  Similarity=0.010  Sum_probs=49.5

Q ss_pred             hhHHHHHHhcCccccccccc------cCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhh
Q 020462           47 VEELGNLLENNPLVRSLIIE------GDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLN  114 (326)
Q Consensus        47 ~~vv~~Ll~~~~~~g~~in~------~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~  114 (326)
                      +..+++|.++    +...|.      .|.---|+||+|+..|..+++ .+|++.|+|+..+|..|+||.+++..
T Consensus       404 p~~ie~lken----~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v-~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKEN----LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCV-KYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhc----CCcccccccccccccccchHHHHHHhcchHHHH-HHHHHhcCCchhcccCCCCccccccc
Confidence            4456666666    443332      344456999999999999999 88999999999999999999998863

>smart00248 ANK ankyrin repeats

Probab=96.50  E-value=0.004  Score=34.00  Aligned_cols=26  Identities=38%  Similarity=0.612  Sum_probs=21.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLEC   26 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~   26 (326)
                      +||+|+|+..|+.++++.|++.+.++
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            47888888888888888888887764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.35  E-value=0.0054  Score=33.44  Aligned_cols=23  Identities=30%  Similarity=0.270  Sum_probs=14.4

Q ss_pred             CccHHHHHHHcCChhHHHHHHhc
Q 020462           34 GWNFLHYAMVSFYVEELGNLLEN   56 (326)
Q Consensus        34 G~tpLh~A~~~g~~~vv~~Ll~~   56 (326)
                      |.||+|+|+..++.++++.|++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            55666666666666666666655

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.93  E-value=0.0084  Score=56.71  Aligned_cols=63  Identities=24%  Similarity=0.147  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhCCcccc-----cccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462           13 VGIVKAIISKNLECYE-----LVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus        13 ~~iv~~Ll~~~~d~~~-----~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      .+.+++|.+++.+.+.     ..|..-.|+||+|+..|..+++.++|+.    |+|+..+|..|.||..+++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee----g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE----GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh----cCCchhcccCCCCcccccc
Confidence            4567777777766532     2344467999999999999999999999    9999999999999999987

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.45  E-value=1.1  Score=38.63  Aligned_cols=112  Identities=7%  Similarity=-0.013  Sum_probs=70.4

Q ss_pred             HHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCC----CCcHHHHHHh
Q 020462            5 HLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVK----GNTPLHVLAA   80 (326)
Q Consensus         5 h~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~----G~TpLH~Aa~   80 (326)
                      --|+..-+.+-+..++....+        -.+++-+|..++..+++-+|+..     .....+|.-    +---+-++-.
T Consensus       158 edAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~-----f~ft~~dv~~~~~~~ydieY~LS  224 (284)
T PF06128_consen  158 EDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSK-----FNFTKQDVASMEKELYDIEYLLS  224 (284)
T ss_pred             HHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhh-----cceecchhhhcCcchhhHHHHHh
Confidence            345555555555555433322        24688889999999999999876     222222221    1112222222


Q ss_pred             -cC-CchHHHHHHhhcc-cCccc---ccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           81 -VR-PDEFDVRMIRKMQ-ANFDA---VNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        81 -~~-~~~~v~~lLl~~g-~d~~~---~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                       .+ +..++ ++.+++| +++|.   +-+.|.|-||-|.+.   +..+++..|++.|+-
T Consensus       225 ~h~a~~kvL-~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky---~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  225 EHSASYKVL-EYFINRGLVDVNKKFQKVNSGDTMLDNAMKY---KNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCCcHHHH-HHHHhccccccchhhhccCCcchHHHhHHhc---CcHHHHHHHHHcCcc
Confidence             22 23333 7777777 66664   457899999999999   777999999999873

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.64  E-value=1.4  Score=31.26  Aligned_cols=46  Identities=33%  Similarity=0.343  Sum_probs=37.1

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhc
Q 020462            3 ALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLEN   56 (326)
Q Consensus         3 pLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~   56 (326)
                      .+..|...|+.|+++.+++.+ .+    |   ...+..|+..-+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            478899999999999998765 22    1   3468999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=82.63  E-value=4.8  Score=34.88  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=61.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCC----cccccccCCCccHHHHHHH--cCChhHHHHHHhcCcccc-ccccc---cCCCC
Q 020462            2 TALHLAADRGYVGIVKAIISKNL----ECYELVDNRGWNFLHYAMV--SFYVEELGNLLENNPLVR-SLIIE---GDVKG   71 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~----d~~~~~d~~G~tpLh~A~~--~g~~~vv~~Ll~~~~~~g-~~in~---~d~~G   71 (326)
                      +++-+|..++.-+++.+|+.+-.    |+...  +.+.--+-++..  ..+..++++.+++    | .++|.   +-+.|
T Consensus       181 ~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~h~a~~kvL~~Fi~~----Glv~vN~~F~~~NSG  254 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSEHSASYKVLEYFINR----GLVDVNKKFQKVNSG  254 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhhcCCcHHHHHHHHhc----cccccchhhhccCCc
Confidence            46677788888899999987632    22221  112223444433  2355788888887    4 45554   46789


Q ss_pred             CcHHHHHHhcCCchHHHHHHhhcccC
Q 020462           72 NTPLHVLAAVRPDEFDVRMIRKMQAN   97 (326)
Q Consensus        72 ~TpLH~Aa~~~~~~~v~~lLl~~g~d   97 (326)
                      .|.|--|.+.++.+.+ .+|+++|+-
T Consensus       255 dtMLDNA~Ky~~~emi-~~Llk~GA~  279 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMI-AFLLKYGAI  279 (284)
T ss_pred             chHHHhHHhcCcHHHH-HHHHHcCcc
Confidence            9999999999999999 999999973

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.57  E-value=3.7  Score=29.44  Aligned_cols=52  Identities=25%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             hhhHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhcCC
Q 020462          202 QAFIVADSIAMVFSLSAVFTHFLMALKIEATKDFDEALFAASIWFTLFSMGAMVIAFVTGTFAMLVPS  269 (326)
Q Consensus       202 ~~F~~~n~~a~~~S~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~m~~af~~~~~~v~~~~  269 (326)
                      .+++++|.+||..|.....+-++..+.+.    -.     -|++       +|.++|..|..+.+...
T Consensus        14 pawi~f~waafg~s~~m~~~gi~~lPVD~----w~-----KGy~-------~MG~lfltgSt~tL~K~   65 (95)
T COG4298          14 PAWIMFNWAAFGASYFMLGLGIWLLPVDL----WT-----KGYW-------AMGILFLTGSTVTLVKY   65 (95)
T ss_pred             chhHhHHHHHHHHHHHHHHHHhheechHH----HH-----HHHH-------HHHHHHHhcchhhhhHH
Confidence            35788999999999888777444444433    11     1222       78888888888776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	3e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-04

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.8 bits (134), Expect = 5e-09
 Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 14/163 (8%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           T LH       + +VK ++          DN G + L  A+ S    + G       L+ 
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEA---LLD 188

Query: 62  SL---IIEGDVKGNTPLHVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYP 117
            L   +I  D    T LH +             +  +      + K+         N   
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 118 ELKEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDT 160
               +     KD               +++    + +D   DT
Sbjct: 249 SKPNDKNGERKDSILENLDLK------WIIANMLNAQDSNGDT 285

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 12/115 (10%)

Query: 2   TALHLAAD-----------RGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEEL 50
           T LH               + Y+ I+   I K                         + +
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 51  GNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQN 105
              L+   ++ +++   D  G+T L+ +AA   +   V  +    A+    NK  
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSG 316

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLEN--N 57
           T LHLA       I +A++    +    EL D RG   LH A     +  +G L ++   
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103

Query: 58  PLVRSLIIEGDVKGNTPLHVLAA 80
           P + S++   +  G+T LH LA+
Sbjct: 104 PHLHSILKATNYNGHTCLH-LAS 125

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 23/91 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELV---DNRGWNFLHYAMVSFYVEELGNLLEN 56
           T LHLA ++G +  V  +         + ++   +  G   LH A +  Y+         
Sbjct: 80  TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG-------- 131

Query: 57  NPLVRSLIIEG-------DVKGNTPLHVLAA 80
             +V  L+  G          G T LH LA 
Sbjct: 132 --IVELLVSLGADVNAQEPCNGRTALH-LAV 159

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 21/90 (23%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T LHLA+  GY+GIV+ ++S   ++   E  +  G   LH A+      +L N      
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCN--GRTALHLAV------DLQNP----D 165

Query: 59  LVRSLIIEG------DVKGNTPLHVLAAVR 82
           LV  L+  G        +G +P   L   R
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQ-LTWGR 194

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 28/92 (30%)

Query: 2  TALHLAADRGYVG----IVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLE 55
          + LHLA           +++ +      L      +N     LH A+           + 
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ---NNLQQTPLHLAV-----------IT 55

Query: 56 NNP-LVRSLIIEG------DVKGNTPLHVLAA 80
          N P +  +L+  G      D +GNTPLH LA 
Sbjct: 56 NQPEIAEALLGAGCDPELRDFRGNTPLH-LAC 86

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 17/86 (19%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            ++H  A +G +  +K  + K        D RG+  L +A  S +    G +      V
Sbjct: 3  SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAF----GEI----ETV 52

Query: 61 RSLIIEG------DVKGNTPLHVLAA 80
          R L+  G        +  + L  LA+
Sbjct: 53 RFLLEWGADPHILAKERESALS-LAS 77

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            +AL LA+  GY  IV  ++ +  ++  Y   D  G   L YA          ++     
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDINIY---DWNGGTPLLYA--VRG----NHV----K 116

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
            V +L+  G         G TP+  LA 
Sbjct: 117 CVEALLARGADLTTEADSGYTPMD-LAV 143

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 13/86 (15%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFY----VEELGNLL 54
              LH +       I   ++SK  N+   +  D+ GW   H A         V +   L 
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA--CSVGNLEVVKS--LY 92

Query: 55  ENNPLVRSLIIEGDVKGNTPLHVLAA 80
           +    ++  + +   +G T LH LA 
Sbjct: 93  DRP--LKPDLNKITNQGVTCLH-LAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.5 bits (109), Expect = 7e-06
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLEN---NP 58
             LH AA  G + +++ +           D +GW  L +A+   + +    L+E      
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE- 200

Query: 59  LVRSLIIEGDVKGNTPLHV 77
                    D KG     V
Sbjct: 201 -----YDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.5 bits (109), Expect = 7e-06
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLENNP 58
           +T LHLA  + +  + + +I          D      LH A     ++  EL  L     
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIEL--LCGLG- 163

Query: 59  LVRSLIIEGDVKGNTPLHVLAA 80
             +S +   D +G TPL   A 
Sbjct: 164 --KSAVNWQDKQGWTPLF-HAL 182

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 23/99 (23%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T LH AA +  V +   ++S   +      V+  G + +  A      E L    + + 
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTL---VNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 59  L-----------VRSLIIEG------DVKGNTPLHVLAA 80
           L           V+  +              T LH  A 
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAV 219

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 21/85 (24%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           MT LH+AA+R +  +++ +      +     +D+ G   LH A ++ +++          
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNA---LDSLGQTALHRAALAGHLQ---------- 294

Query: 59  LVRSLIIEG------DVKGNTPLHV 77
             R L+  G       ++G T   +
Sbjct: 295 TCRLLLSYGSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T LHLAA    V IV+ ++    ++      D  G   LH A    Y        E   
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNA--CSY-----GHYE--- 105

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
           +   L+  G      D+   TPLH  AA
Sbjct: 106 VTELLLKHGACVNAMDLWQFTPLH-EAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 21/83 (25%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           TALH AA  G++   + ++S   +   ++  +G+                     N  V+
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSDP-SIISLQGFTAAQMG---------------NEAVQ 325

Query: 62  SLIIEG-DVKG---NTPLHVLAA 80
            ++ E   ++    +  L   A+
Sbjct: 326 QILSESTPMRTSDVDYRLL-EAS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 25/91 (27%)

Query: 1   MTALHLAADRGYVG---IVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLE 55
            TALH A    +     + + ++ K  N+      +      LH A  +       +   
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNE---KNKDFMTPLHVA--AER----AHN-- 260

Query: 56  NNPLVRSLIIEG------DVKGNTPLHVLAA 80
              ++  L   G      D  G T LH  AA
Sbjct: 261 --DVMEVLHKHGAKMNALDSLGQTALH-RAA 288

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.4 bits (114), Expect = 8e-07
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 22/88 (25%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            ++H  A +G +  +   I +   +      D  G+  L +A  + +    G +     
Sbjct: 4  SLSVHQLAAQGEMLYLATRIEQENVINH---TDEEGFTPLMWA--AAH----GQI----A 50

Query: 59 LVRSLIIEG------DVKGNTPLHVLAA 80
          +V  L+  G           + L  LA 
Sbjct: 51 VVEFLLQNGADPQLLGKGRESALS-LAC 77

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            +AL LA  +GY  IVK ++    ++  Y   D  G   L YA          ++     
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEY---DWNGGTPLLYA--VHG----NHV----K 116

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
            V+ L+  G         G   +  LA 
Sbjct: 117 CVKMLLESGADPTIETDSGYNSMD-LAV 143

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 13/80 (16%), Positives = 18/80 (22%), Gaps = 18/80 (22%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
              +HLA       +V A++            RG             E          + 
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDERE----------VN 127

Query: 61  RSLIIEGDVKGNTPLHVLAA 80
                    KG T LH    
Sbjct: 128 EIGSHVKHCKGQTALH-WCV 146

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 30/104 (28%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN 56
           M  +H+AA +G    V+ +I    +       +  G   LH A     V+  +   L   
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSPTI---QNRFGCTALHLACKFGCVDTAKY--LASV 75

Query: 57  N----------PL-----------VRSLIIEGDVKGNTPLHVLA 79
                      P+           V +L+     +G  P  +L 
Sbjct: 76  GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLN 119

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 21/90 (23%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECY----ELVDNRGWNFLHYAMVSFYVEELGNLLEN 56
            T L  A +      +  ++           +  + +G + LH+A++  + +        
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED-------- 225

Query: 57  NPLVRSLIIEG------DVKGNTPLHVLAA 80
             +    +  G      D +   PL+ L+ 
Sbjct: 226 --VAMRFVEMGIDVNMEDNEHTVPLY-LSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 15/91 (16%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYA-------MVSFYVEELG 51
            + LH A    +  +    +    ++      DN     L+ +       +    +++  
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNM---EDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 52  NLLENNPLVR--SLIIEGDVKGNTPLHVLAA 80
             L         + ++   V     +   AA
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVP-AAA 298

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 20/91 (21%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWN----------FLHYAMVSFYVE 48
              L+L+     V + K ++ K           + G            F+  A      E
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

Query: 49  --ELGNLLENNPLVRSLIIEGDVKGNTPLHV 77
             +L  L E        ++     G      
Sbjct: 305 VLQL--LQEKL----DEVVRSLNTGAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 1   MTALHLAADRG--YVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLL 54
            TALH     G  Y+ ++K ++    +       D      L  AM     E  +L  ++
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASPTA---KDKADETPLMRAMEFRNREALDL--MM 193

Query: 55  ENNPLVRSLII-EGDVKGNTPLHVLAA 80
           +  P   SL +   + +GN+ LH  A 
Sbjct: 194 DTVPSKSSLRLDYANKQGNSHLH-WAI 219

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 9e-07
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 18/87 (20%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            + +HLAA  G+  IV  +I+K  +  +++D  G   L +A  ++      + ++     
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWA--AYR----THSVD---PT 159

Query: 61  RSLIIEG-------DVKGNTPLHVLAA 80
           R L+              NT LH  A 
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALH-WAV 185

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 17/86 (19%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           +T LH AA    + +VK  ISK     +L  +     LH+A  +      G+L     +V
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA--TRQ----GHL----SMV 92

Query: 61  RSLIIEG------DVKGNTPLHVLAA 80
             L+  G      D +G + +H LAA
Sbjct: 93  VQLMKYGADPSLIDGEGCSCIH-LAA 117

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYA 41
            TALH A   G   ++  ++    N++     + +G + L  A
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDA---QNIKGESALDLA 217

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 23/123 (18%)

Query: 1   MTALHLAADRGYVGIVKAIISKN------------------LECYELVDNRGWNFLHYAM 42
              L LAA      +V  ++                            ++   + L   M
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196

Query: 43  VSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVN 102
               ++    L     L        + +G TPL  LAA        R I + + +  A +
Sbjct: 197 YDGLLQMGARLCPTVQLEE----ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSGAAAH 251

Query: 103 KQN 105
             +
Sbjct: 252 HHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 28/131 (21%)

Query: 1   MTALHLAADRGYVGIVKAIISK------------NLECYELVDNRGWNFLHYAMVSFYVE 48
            +ALH+A ++  +  VK ++                +        G   L  A       
Sbjct: 91  HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLA-ACTKQW 149

Query: 49  ELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFD---------------VRMIRK 93
           ++   L  NP   + +   D  GNT LH L  +  +  +                  +  
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209

Query: 94  MQANFDAVNKQ 104
                +  N Q
Sbjct: 210 TVQLEEISNHQ 220

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.4 bits (109), Expect = 1e-06
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 22/88 (25%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           T LHLAA  G++ +VK ++    ++      D  G   LH A  +      G+L     
Sbjct: 3  RTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLA--ARN----GHL----E 49

Query: 59 LVRSLIIEG------DVKGNTPLHVLAA 80
          +V+ L+  G      D  G TPLH LAA
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLH-LAA 76

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
              LH AA  GY+ I + +IS+  ++     V++ G   L  A       E   + E   
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHV---GAVNSEGDTPLDIA-------EEEAMEE--- 153

Query: 59  LVRSLIIEGDVKGNTPLHVLAAVRPDEFDVR 89
           L+++ +    V            R    D R
Sbjct: 154 LLQNEVNRQGVDIEAARK--EEERIMLRDAR 182

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           +TALH A     V +VK ++    N+      DN GW  LH A    Y++          
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANINQ---PDNEGWIPLHAAASCGYLD---------- 120

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
           +   LI +G      + +G+TPL  +A 
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLD-IAE 147

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 17/83 (20%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            TALH+AA +GY  ++K +I    +   + D  GW  LH A  + +        E     
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAA--AHW-----GKEE---AC 248

Query: 61  RSLIIEG------DVKGNTPLHV 77
           R L+         +  G T   V
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 12/79 (15%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           T L +A +     +++  +++     E         +      +      N         
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN--------- 191

Query: 62  SLIIEGDVKGNTPLHVLAA 80
              +     G T LHV AA
Sbjct: 192 --DVRHAKSGGTALHV-AA 207

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
                A   G    V  ++ +  ++      +  G   LH A          + ++   +
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINY---ANVDGLTALHQA--CID-----DNVD---M 88

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
           V+ L+  G      D +G  PLH  AA
Sbjct: 89  VKFLVENGANINQPDNEGWIPLHA-AA 114

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 14/95 (14%)

Query: 1   MTALHLAADRGYVGIVKAIISK-------------NLECYELVDNRGWNFLHYAMVSFYV 47
            TALH+A +R     V+ ++ K               +        G   L  A      
Sbjct: 94  QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA-ACTNQ 152

Query: 48  EELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVR 82
             + + L  N   ++ +   D +GNT LH L A+ 
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 17/94 (18%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYEL--VDNRGWNFLHYA---------MVSFYVEEL 50
             L LAA      IV  +     +  +L   D+RG   LH              F  +  
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201

Query: 51  GNLLEN----NPLVRSLIIEGDVKGNTPLHVLAA 80
             LL       P      +  +  G +PL  +AA
Sbjct: 202 DLLLIKCAKLFPDTNLEALL-NNDGLSPLM-MAA 233

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
            AL  AA++G++  VK ++    E  +  ++ G+  L  A      E      +   +V+
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA--VGLREGNQLYQD---IVK 162

Query: 62  SLIIEG------DVKGNTPLHVLAA 80
            L+  G      D  G T +   A 
Sbjct: 163 LLMENGADQSIKDNSGRTAMD-YAN 186

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 18/90 (20%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           +    A  +G   I+  ++          +  G N L  A  +         ++    V+
Sbjct: 74  SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPA--AEK-----GHID---NVK 123

Query: 62  SLIIEG-------DVKGNTPLHVLAAVRPD 84
            L+ +G       +  G T L   A    +
Sbjct: 124 LLLEDGREDIDFQNDFGYTALI-EAVGLRE 152

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 23/88 (26%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T L++A     + I KA+I +  ++      ++   +   YA             E   +
Sbjct: 41  TPLNIAVHNNDIEIAKALIDRGADINL---QNSISDSPYLYA--GAQ-----GRTE---I 87

Query: 60  VRSLIIEG-------DVKGNTPLHVLAA 80
           +  ++          +  G   L   AA
Sbjct: 88  LAYMLKHATPDLNKHNRYGGNALI-PAA 114

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 22/87 (25%)

Query: 2  TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
            L  A  R    + + +      ++    VD  G   L+ A          N +E   +
Sbjct: 8  ALLEAANQRDTKKVKEILQDTTYQVDE---VDTEGNTPLNIA--VHN-----NDIE---I 54

Query: 60 VRSLIIEG------DVKGNTPLHVLAA 80
           ++LI  G      +   ++P    A 
Sbjct: 55 AKALIDRGADINLQNSISDSPYL-YAG 80

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           + L  A +   + +V+ ++    N+         G + LH A  S        LL    L
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGANVNA---QMYSGSSALHSA--SGR-----GLLP---L 198

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
           VR+L+  G      +   +TPL  +A 
Sbjct: 199 VRTLVRSGADSSLKNCHNDTPLM-VAR 224

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 21/89 (23%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELV---DNRGWNFLHYAMVSFYVEELGNLLENNP 58
           TA HLA +      ++A++         +   +  G   LH A+ +   E          
Sbjct: 81  TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE---------- 130

Query: 59  LVRSLIIEG------DVK-GNTPLHVLAA 80
            V+ L+  G      D+K G +PL   A 
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLI-HAV 158

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 16/86 (18%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECY---ELVDNRGWNFLHYAMVSFYVE--ELGNLLEN 56
          T LH+A  +G +  V  +++   +     ++ +N     LH A+++       L  L+  
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL--LVTA 68

Query: 57 --NPLVRSLIIEGDVKGNTPLHVLAA 80
            +       +  D  G T  H LA 
Sbjct: 69 GAS------PMALDRHGQTAAH-LAC 87

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           +TALH+A +      V+ ++ +  +   +    G + L +A          N L    +V
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA--VEN-----NSLS---MV 166

Query: 61  RSLIIEG------DVKGNTPLHVLAAVR 82
           + L+  G         G++ LH  A+ R
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHS-ASGR 193

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYEL--VDNRGWNFLHYAMVSFYVEELGN---LLE 55
            +ALH AA     G++  +++      ++  +D  G   L     +   +++ +   L+E
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259

Query: 56  N----NPLVRSLIIEGDVKGNTPLHVLAA 80
                +    +       KG T LH  AA
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALH-YAA 287

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T L LA       +V  ++    +       +    + LH A  +     +   + N+ 
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTI---YNKSERSALHQA-AANRDFGMMVYMLNST 222

Query: 59  LVRSLIIEGDVKGNTPLHVLAA 80
            ++  I E D  G T L  + A
Sbjct: 223 KLKGDIEELDRNGMTALM-IVA 243

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 22/86 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK---NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENN 57
            TALH AA    + IVK ++ +   N +     D  G   +  A  +         +E  
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDK---QDEDGKTPIMLA--AQE-----GRIE-- 327

Query: 58  PLVRSLIIEG------DVKGNTPLHV 77
            +V  LI +G      D   +T   +
Sbjct: 328 -VVMYLIQQGASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 9/84 (10%), Positives = 19/84 (22%), Gaps = 17/84 (20%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           +         G   +     +         +      LH           G+      + 
Sbjct: 62  LYPNPQGYGNGNDFLGDFNHTNLQI-PTEPEPESPIKLHTEA-------AGSY----AIT 109

Query: 61  RSLIIEG-DVK----GNTPLHVLA 79
             +  E  ++       T LH +A
Sbjct: 110 EPITRESVNIIDPRHNRTVLHWIA 133

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 24/92 (26%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECY-------ELVDNRGWNFLHYAMVSFYVEELGNLL 54
           T LH  A        + +I    +           +D      L  A+++          
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR------ 180

Query: 55  ENNPLVRSLIIEG------DVKGNTPLHVLAA 80
               LV  L+  G      +    + LH  AA
Sbjct: 181 ----LVAYLMKAGADPTIYNKSERSALH-QAA 207

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYA 41
            T + LAA  G + +V  +I +  ++E    VD         A
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQQGASVEA---VDATDHTARQLA 353

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 18/86 (20%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           +T LHL A  G+V +   +I   +   +     G+  LH A  S Y    GN+     LV
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVA--SHY----GNIK----LV 327

Query: 61  RSLIIEG------DVKGNTPLHVLAA 80
           + L+            G +PLH  AA
Sbjct: 328 KFLLQHQADVNAKTKLGYSPLH-QAA 352

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 18/86 (20%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
          +T LH+A+  G++ IVK ++ +      + + +    LH A  + + E          + 
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTE----------VA 63

Query: 61 RSLIIEG------DVKGNTPLHVLAA 80
          + L+              TPLH  AA
Sbjct: 64 KYLLQNKAKVNAKAKDDQTPLHC-AA 88

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T LH+AA  G+V  V A++ K  +  C   +  +G+  LH A  + Y    G +     
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQAC---MTKKGFTPLHVA--AKY----GKV----R 160

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
           +   L+            G TPLHV A 
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHV-AV 187

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T LH AA  G+  +VK ++    N     L    G   LH A    +VE          
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANP---NLATTAGHTPLHIAAREGHVE---------- 127

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
            V +L+ +         KG TPLH +AA
Sbjct: 128 TVLALLEKEASQACMTKKGFTPLH-VAA 154

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T LHLAA  G+  +V  ++SK  N       +  G   LH    +      G++    P+
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNL---GNKSGLTPLHLV--AQE----GHV----PV 293

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
              LI  G         G TPLHV A+
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHV-AS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 18/86 (20%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           +T LH+A     + IVK ++ +           G+  LH A     VE          + 
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVE----------VA 228

Query: 61  RSLIIEG------DVKGNTPLHVLAA 80
           RSL+  G       V+G TPLH LAA
Sbjct: 229 RSLLQYGGSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 12/82 (14%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFY-----VEELGNLLE 55
            + LH AA +G+  IV  ++       E V + G   L  A           + L  + +
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPNE-VSSDGTTPLAIA--KRLGYISVTDVLKVVTD 401

Query: 56  NNPLVRSLIIEGDVKGNTPLHV 77
                 S ++  D    +    
Sbjct: 402 ET----SFVLVSDKHRMSFPET 419

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 18/94 (19%)

Query: 2   TALHLAADRGYVGIVKAIISK----NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLE 55
           TALH+AA    +     ++        E        G   LH A+++  V       LL 
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA--LLA 96

Query: 56  ---------NNPLVRSLIIEGDVKGNTPLHVLAA 80
                       +           G  PL   AA
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLS-FAA 129

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 16/89 (17%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYA------MVSFYVEELGNL 53
             L  AA  G   IV+ +I    ++      D+ G   LH          +  +  L  L
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRA---QDSLGNTVLHILILQPNKTFACQMYNL--L 177

Query: 54  LEN--NPLVRSLIIEGDVKGNTPLHVLAA 80
           L       ++SL +  + +G TP   LA 
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFK-LAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 20/92 (21%)

Query: 2   TALHLAADRGYVGIVKAIISK------------NLECYELVDNRGWNFLHYAMVSFYVE- 48
           TALH+A     V +V+A++++                   +   G + L +A      E 
Sbjct: 77  TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136

Query: 49  -ELGNLLENNPLVRSLIIEGDVKGNTPLHVLA 79
             L  L+E+   +R      D  GNT LH+L 
Sbjct: 137 VRL--LIEHGADIR----AQDSLGNTVLHILI 162

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 2  TALHLAADRGYVGIVKAI-ISKNLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLENNP 58
          + L LAA    V  +  +   +  E ++     G   LH A +   +E   +  L+E  P
Sbjct: 5  SPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMV--LMEAAP 61

Query: 59 LVRSLII-EGDVKGNTPLHVLAA 80
           +    +     +G T LH +A 
Sbjct: 62 ELVFEPMTSELYEGQTALH-IAV 83

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.0 bits (108), Expect = 3e-06
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T LHLAA  G++ +VK ++    ++      D  G   LH A  +         LE   +
Sbjct: 37  TPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLA--ARN-----GHLE---V 83

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
           V+ L+  G      D  G TPLH LAA
Sbjct: 84  VKLLLEAGADVNAKDKNGRTPLH-LAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.9 bits (105), Expect = 7e-06
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 22/88 (25%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           T LHLAA  G++ +VK ++    ++      D  G   LH A  +      G+L     
Sbjct: 3  RTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLA--ARN----GHL----E 49

Query: 59 LVRSLIIEG------DVKGNTPLHVLAA 80
          +V+ L+  G      D  G TPLH LAA
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLH-LAA 76

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYA 41
            T LHLAA  G++ +VK ++    ++      D  G   LH A
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLA 108

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 19/89 (21%)

Query: 1   MTALHLAADRGYVGIVKAIISK---NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENN 57
            TAL  AA++G+V ++K ++ +   ++      DN G N L +A++S       +  +  
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNA---CDNMGRNALIHALLS------SDDSDVE 199

Query: 58  PLVRSLIIEG------DVKGNTPLHVLAA 80
            +   L+  G        +G TPL  LA 
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLI-LAV 227

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 16/90 (17%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN 56
            T   LAA  G V ++K  +SK  ++      D  G+     A V   V+  +   L + 
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNE---CDFYGFTAFMEAAVYGKVKALKF--LYKR 127

Query: 57  NPLV------RSLIIEGDVKGNTPLHVLAA 80
              V      +         G T L   AA
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALM-DAA 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T LH A       IV+ ++    +          G      A ++  V+          
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHGADPVL---RKKNGATPFLLAAIAGSVK---------- 86

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
           L++  + +G      D  G T     AA
Sbjct: 87  LLKLFLSKGADVNECDFYGFTAFM-EAA 113

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 17/85 (20%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
            L  A     V +V+ ++          +  GW  LH A                 +V 
Sbjct: 7  HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQM----SRE----DIVE 56

Query: 62 SLIIEG------DVKGNTPLHVLAA 80
           L+  G         G TP  + AA
Sbjct: 57 LLLRHGADPVLRKKNGATPFLL-AA 80

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
            T L LA ++ ++G+V+ ++ +        D+ G   L  A
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 21/83 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T LHLAA  G+  IVK +++K  ++         G    H A  + + E          +
Sbjct: 44  TPLHLAAKNGHAEIVKLLLAKGADVNA---RSKDGNTPEHLAKKNGHHE----------I 90

Query: 60  VRSLIIEG------DVKGNTPLH 76
           V+ L  +G          +   H
Sbjct: 91  VKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.5 bits (104), Expect = 6e-06
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 22/88 (25%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           T LH AA  G+   VK ++SK  ++         G   LH A  +          E   
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNA---RSKDGNTPLHLA--AKN-----GHAE--- 56

Query: 59 LVRSLIIEG------DVKGNTPLHVLAA 80
          +V+ L+ +G         GNTP H LA 
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEH-LAK 83

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 14/92 (15%)

Query: 1   MTALHLAADRGYVGIVKAIISK-------------NLECYELVDNRGWNFLHYAMVSFYV 47
            TALH+A +R  + +V  ++                          G   L  A      
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA-ACTNQ 160

Query: 48  EELGNLLENNPLVRSLIIEGDVKGNTPLHVLA 79
             +   L  N    + I   D  GNT LH L 
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 41/120 (34%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLEC--YELVDNRGWNFLHYA---------MVSFYVEE 49
              L LAA    + IVK ++  + +       D+ G   LH              F    
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 50  LGNLLE---------------NN----PL----------VRSLIIEGDVKGNTPLHVLAA 80
              +L                N     PL          V + I++ ++      H  AA
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRH-AAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 2   TALHLAADRGYVGIVKAII------SKNLECYELVD-NRGWNFLHYAM----------VS 44
            ++  A  +     +++++       K L   E  D   G   L  AM          ++
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 45  FYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVR 82
             ++           V +   +   KG T LH +A  R
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALH-IAIER 111

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 17/86 (19%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            T LHLAA +G+  +V+ ++S         D+ GW  + +A  + Y       ++   LV
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA--TEY-----KHVD---LV 127

Query: 61  RSLIIEG------DVKGNTPLHVLAA 80
           + L+ +G      D + N  LH  AA
Sbjct: 128 KLLLSKGSDINIRDNEENICLHW-AA 152

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN 56
           + LH AA+ G+V I   ++    N++            L  A  + ++E  +   L++ 
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDT---CSEDQRTPLMEAAENNHLEAVKY--LIKA 66

Query: 57 NPLVRSLIIEGDVKGNTPLHVLAA 80
               +L+   D +G+T LH LAA
Sbjct: 67 G----ALVDPKDAEGSTCLH-LAA 85

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 13/81 (16%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN 56
              LH AA  G V I + +++   +L     V+  G + LH A      +   L   L  
Sbjct: 145 NICLHWAAFSGCVDIAEILLAAKCDLHA---VNIHGDSPLHIAARENRYDCVVL--FLSR 199

Query: 57  NPLVRSLIIEGDVKGNTPLHV 77
           +  V       + +G TPL  
Sbjct: 200 DSDVT----LKNKEGETPLQC 216

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 18/85 (21%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
               A   G +  VK  ++K  +        G   LHYA  +      G L     ++ 
Sbjct: 9  KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYA--ADC----GQL----EILE 57

Query: 62 SLIIEG------DVKGNTPLHVLAA 80
           L+++G      D    TPL   A 
Sbjct: 58 FLLLKGADINAPDKHHITPLL-SAV 81

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.9 bits (105), Expect = 6e-06
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 21/85 (24%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
              LH AAD G + I++ ++ K  ++      D      L  A   +        +    
Sbjct: 41  RKPLHYAADCGQLEILEFLLLKGADINA---PDKHHITPLLSA--VYE-----GHVS--- 87

Query: 59  LVRSLIIEG------DVKGNTPLHV 77
            V+ L+ +G         G T    
Sbjct: 88  CVKLLLSKGADKTVKGPDGLTAFEA 112

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 27/120 (22%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYEL----------VDNRGWNFLHYAMVSFYVEEL 50
            T        G   I         E  ++          +       +   + +++V+E 
Sbjct: 76  TTLFFPLFQGGGNDIT-----GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE- 129

Query: 51  GNLLENNPLVRSLIIEG-------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNK 103
               E  PL + +  +        D  G T L            ++M+      ++    
Sbjct: 130 ---NEMIPLYKLIFSQSGLQLLIKDKWGLTALE-FVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 14/86 (16%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
             +  AA  G       +  K  E  +       N L+  +         N      + 
Sbjct: 7  YRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVL------RNNNDEARYKIS 58

Query: 61 RSLIIEG------DVKGNTPLHVLAA 80
            LI +G        +G T    L  
Sbjct: 59 MFLINKGADIKSRTKEGTTLFFPLFQ 84

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.3 bits (106), Expect = 6e-06
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 22/88 (25%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           T LH+A+ +G +  V+ ++    +       D+ GW  LH A    +       L+   
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEA--CNH-----GHLK--- 57

Query: 59 LVRSLIIEG------DVKGNTPLHVLAA 80
          +V  L+           + ++PLH  AA
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLH-DAA 84

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.9 bits (97), Expect = 9e-05
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 21/84 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T LH A + G++ +V+ ++     +        +  + LH A  + +V+          +
Sbjct: 45  TPLHEACNHGHLKVVELLLQHKALVNT---TGYQNDSPLHDAAKNGHVD----------I 91

Query: 60  VRSLIIEG------DVKGNTPLHV 77
           V+ L+  G      ++ G  P+  
Sbjct: 92  VKLLLSYGASRNAVNIFGLRPVDY 115

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 17/86 (19%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
          M  +      G    V+  +          D+ G++ LH+A                 +V
Sbjct: 6  MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CRE-----GRSA---VV 55

Query: 61 RSLIIEG------DVKGNTPLHVLAA 80
            LI+ G      +   +TPLH LAA
Sbjct: 56 EMLIMRGARINVMNRGDDTPLH-LAA 80

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T LHLAA  G+  IV+ ++    ++     V+  G   LHYA   F+        +   +
Sbjct: 74  TPLHLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYA--CFW-----GQDQ---V 120

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
              L+  G      +  G  P+   A 
Sbjct: 121 AEDLVANGALVSICNKYGEMPVD-KAK 146

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           TALH AA +GY  IV+ +++K       +L +         A  +     L      +  
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGART---DLRNIEKKLAFDMATNAACASLLKKKQGTD-- 196

Query: 60  VRSLIIEGDVKGNTPLHV 77
             ++    + +       
Sbjct: 197 --AVRTLSNAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 11/79 (13%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           T       +G  G++ +                 N LH A     +  L   L+N   V 
Sbjct: 47  TNWWKGTSKGRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVN 100

Query: 62  SLIIEGDVKGNTPLHVLAA 80
                 D  G+T L+  A 
Sbjct: 101 ----GLDKAGSTALY-WAC 114

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 23/88 (26%)

Query: 2   TALHLAADRGYVGIVKAIISK---NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           TAL+ A   G+  IV+ + ++    L      +  G   LH A    Y +          
Sbjct: 108 TALYWACHGGHKDIVEMLFTQPNIELNQ---QNKLGDTALHAAAWKGYAD---------- 154

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
           +V+ L+ +G      +++       +A 
Sbjct: 155 IVQLLLAKGARTDLRNIEKKLAFD-MAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 23/88 (26%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
             LH AA RG +  ++  +     +     +D  G   L++A         G+      +
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGVNG---LDKAGSTALYWA--CHG----GHK----DI 121

Query: 60  VRSLIIEG-------DVKGNTPLHVLAA 80
           V  L  +        +  G+T LH  AA
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALH-AAA 148

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 9/80 (11%), Positives = 18/80 (22%), Gaps = 13/80 (16%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
            +  A           +  +  +    + +                  G       L+ 
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIY-ITDMSDTNWWKG------TSKGRTG----LIP 62

Query: 62 SLIIEG-DVKGNTPLHVLAA 80
          S  +       + PLH  AA
Sbjct: 63 SNYVAEQAESIDNPLH-EAA 81

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 6/87 (6%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T LH AA    V + K ++     +      D +        M   Y +    L     
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 59  LVRSLIIEGDVKGNTPLHVLAAVRPDE 85
            +       +      L        DE
Sbjct: 164 KMG----IMNKGVIYALWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 23/88 (26%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            +L               I+    ++     +      L  +  S          +   
Sbjct: 6  QVSLPPGKRTNLRKTGSERIAHGMRVK----FNPLPLALLLDS--SLE-----GEFD--- 51

Query: 59 LVRSLIIEG------DVKGNTPLHVLAA 80
          LV+ +I E       + +G T LH  A 
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALH-NAV 78

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           +  L  ++  G   +V+ II +  +     L ++ G   LH A+ + + E          
Sbjct: 38  LALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTE---------- 84

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
           +V+ L+  G      D  G TPLH  AA
Sbjct: 85  IVKFLVQFGVNVNAADSDGWTPLH-CAA 111

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 24/88 (27%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           +TALH A   G+  IVK ++    N+      D+ GW  LH A  +       N+     
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQFGVNVNA---ADSDGWTPLHCA--ASC----NNV----Q 117

Query: 59  LVRSLIIEG---------DVKGNTPLHV 77
           + + L+  G         D++       
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCE 145

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 19/87 (21%)

Query: 2  TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
          TALHLA    +   +  ++      E  +L ++ G   LH A  +               
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AIL-----GEAS---T 60

Query: 60 VRSLIIEG------DVKGNTPLHVLAA 80
          V  L   G      +  G+T LH LA 
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALH-LAC 86

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 18/85 (21%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           T LHLA +     +++ ++    +        G   L  A++               L R
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTA-RMYGGRTPLGSALLRPNPI----------LAR 242

Query: 62  SLIIEG------DVKGNTPLHVLAA 80
            L   G           +P    + 
Sbjct: 243 LLRAHGAPEPEDGGDKLSPCS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLENNP 58
            T LH+A       +V+ +     +  +     G   LH A+ +      EL  LL+   
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL--LLKAG- 215

Query: 59  LVRSLIIEGDVKGNTPLHVLAA 80
              +        G TPL   A 
Sbjct: 216 ---ADPTARMYGGRTPLG-SAL 233

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 14/115 (12%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFY-----VEEL----- 50
            TALHLAA  G    V+ + +         +  G   LH A             L     
Sbjct: 46  QTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALHLA--CRVRAHTCACVLLQPRP 102

Query: 51  -GNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQ 104
                 ++  +           + P  V +   P+  +       +   +A N  
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 16/91 (17%)

Query: 2   TALHLAADRGYVGIVKAIISKN------------LECYELVDNRGWNFLHYAMVSFYVEE 49
           TALHLA           ++                +  +   +                E
Sbjct: 80  TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139

Query: 50  LGNLLENNPLVRSLIIEGDVKGNTPLHVLAA 80
                E+  L    +   +  G+TPLH +A 
Sbjct: 140 EEPRDEDWRLQ---LEAENYDGHTPLH-VAV 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T LHLAA  G++ IV+ ++    ++     VD+ G   L  A  + +       LE   +
Sbjct: 49  TPLHLAAFNGHLEIVEVLLKNGADVNA---VDHAGMTPLRLA--ALF-----GHLE---I 95

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
           V  L+  G      D++G+TPLH LAA
Sbjct: 96  VEVLLKNGADVNANDMEGHTPLH-LAA 121

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 22/87 (25%)

Query: 2  TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
            L  AA  G    V+ +++   ++      D  GW  LH A  + ++E          +
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNA---EDASGWTPLHLAAFNGHLE----------I 62

Query: 60 VRSLIIEG------DVKGNTPLHVLAA 80
          V  L+  G      D  G TPL  LAA
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLR-LAA 88

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           MT L LAA  G++ IV+ ++    ++      D  G   LH A  + +       LE   
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADV---NANDMEGHTPLHLA--AMF-----GHLE--- 127

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
           +V  L+  G      D  G T    ++ 
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFD-ISI 154

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 21/87 (24%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           ++ LH A   G++  VK ++     +     V       L  A VS   +          
Sbjct: 93  VSPLHEACLGGHLSCVKILLKHGAQVNG---VTADWHTPLFNACVSGSWD---------- 139

Query: 59  LVRSLI-----IEGDVKGNTPLHVLAA 80
            V  L+     ++ +    +P+H  AA
Sbjct: 140 CVNLLLQHGASVQPESDLASPIH-EAA 165

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            + +H AA  G+   ++ +IS+   +     +     + LH A +  ++           
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNI---ITADHVSPLHEACLGGHLS---------- 106

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
            V+ L+  G          +TPL   A 
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLF-NAC 133

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 21/87 (24%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            + +H AA RG+V  V ++I+   N++      +     L+ A  +              
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDH---KISHLGTPLYLACENQQRA---------- 204

Query: 59  LVRSLIIEG-DV----KGNTPLHVLAA 80
            V+ L+  G DV      ++PLH    
Sbjct: 205 CVKKLLESGADVNQGKGQDSPLH-AVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 23/87 (26%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T L+LA +      VK ++    ++           + LH  + +   E          L
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVVRTASEE----------L 237

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
              L+  G      + +G  P+  L  
Sbjct: 238 ACLLMDFGADTQAKNAEGKRPVE-LVP 263

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 23/87 (26%)

Query: 2  TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
            L  AA RG +  + +++    N+      +  G   L          +LGN      +
Sbjct: 7  NELASAAARGDLEQLTSLLQNNVNVNA---QNGFGRTALQVM-------KLGNP----EI 52

Query: 60 VRSLIIEG------DVKGNTPLHVLAA 80
           R L++ G      D  G   +H  AA
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIH-DAA 78

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 23/89 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
              +H AA  G++  ++ ++    ++    + DN G   LH A  +         L    
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADV---NIEDNEGNLPLHLA--AKE-----GHLR--- 117

Query: 59  LVRSLIIEG-------DVKGNTPLHVLAA 80
           +V  L+          + KG+T    LA 
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACD-LAR 145

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 18/85 (21%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
            L  AA RG V  V+ ++ + L   + ++  G   L   M        G+      +  
Sbjct: 4  DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-------FGST----AIAL 52

Query: 62 SLIIEG------DVKGNTPLHVLAA 80
           L+ +G      D  G +P+H  AA
Sbjct: 53 ELLKQGASPNVQDTSGTSPVH-DAA 76

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 23/88 (26%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            + +H AA  G++  +K ++    ++      D  G   +H A+            E + 
Sbjct: 69  TSPVHDAARTGFLDTLKVLVEHGADVNV---PDGTGALPIHLAV-----------QEGHT 114

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
            V S +         D +G TPL  LA 
Sbjct: 115 AVVSFLAAESDLHRRDARGLTPLE-LAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 23/88 (26%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            TAL +    G   I   ++ +  +     + D  G + +H A  +         L+   
Sbjct: 37  KTALQVMM-FGSTAIALELLKQGASP---NVQDTSGTSPVHDA--ART-----GFLD--- 82

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
            ++ L+  G      D  G  P+H LA 
Sbjct: 83  TLKVLVEHGADVNVPDGTGALPIH-LAV 109

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNF-LHYAMVSFYVE--ELGNLLENN 57
            TAL+ A D G +  VK  + KN          GW    ++A++   V        L   
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSY--FLSEI 152

Query: 58  PLVRSLIIEGDVKGNTPLHVLAA 80
           P              + +H +  
Sbjct: 153 P-----STFDLAILLSCIH-ITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 24/89 (26%)

Query: 1   MTALHLAADRGYVGIVKAIISK---NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENN 57
            T+ + A     V IV   +S+     +          + +H           G++    
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFD-----LAILLSCIHIT--IKN----GHV---- 174

Query: 58  PLVRSLIIEG------DVKGNTPLHVLAA 80
            ++  L+         +     P   LA 
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAI 203

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 6/80 (7%), Positives = 29/80 (36%), Gaps = 17/80 (21%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGW-NFLHYAMVSFYVEELGNLLENN 57
           ++ +H+    G+V ++  ++    +       ++  +   +  A+ +  +E         
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNT---NNSLLFIPDIKLAIDNKDIE--------- 209

Query: 58  PLVRSLIIEGDVKGNTPLHV 77
            ++++L     +   +    
Sbjct: 210 -MLQALFKYD-INIYSANLE 227

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 16/82 (19%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
             +H AA  G++  +  +      L+     D  G   +  A      EELG+      +
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDLA------EELGHR----DV 126

Query: 60  VRSLIIEG-DVKGNTPLHVLAA 80
            R L       +G+    + AA
Sbjct: 127 ARYLRAAAGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 24/89 (26%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
             L  AA RG V  V+A++    N       ++ G   +   M       +G+      
Sbjct: 13 ADWLATAAARGRVEEVRALLEAGANPNA---PNSYGRRPIQVMM-------MGSA----R 58

Query: 59 LVRSLIIEG------DVKGNT-PLHVLAA 80
          +   L++ G      D    T P+H  AA
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVH-DAA 86

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 14/84 (16%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN-- 56
            T L LAA     G+++ +I+ + +    VD+ G + LH+A     V+   +  LL+N  
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVV--LLKNGA 149

Query: 57  NPLVRSLIIEGDVKGNTPLHVLAA 80
           N          + +  TPL  LAA
Sbjct: 150 N------KDMQNNREETPLF-LAA 166

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLENNPL 59
           TALHLAA        K ++  + +     DN G   LH A+ +      ++  L+ N   
Sbjct: 27  TALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQI--LIRNRAT 83

Query: 60  VRSLIIEGDVKGNTPLHVLAA 80
               +      G TPL  LAA
Sbjct: 84  D---LDARMHDGTTPLI-LAA 100

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 17/82 (20%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN- 56
           +ALH AA    V     ++    N +     +NR    L  A      E  ++  LL++ 
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKV--LLDHF 181

Query: 57  -NPLVRSLIIEGDVKGNTPLHV 77
            N          D     P  +
Sbjct: 182 AN------RDITDHMDRLPRDI 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 14/83 (16%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLENN 57
           T L LAA     G+++ +I+   ++     VD+ G + LH+A     V+   +  LL+N 
Sbjct: 126 TPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVV--LLKNG 180

Query: 58  PLVRSLIIEGDVKGNTPLHVLAA 80
               +     + +  TPL  LAA
Sbjct: 181 ----ANKDMQNNREETPLF-LAA 198

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 17/82 (20%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN- 56
           +ALH AA    V     ++    N +     +NR    L  A      E  ++  LL++ 
Sbjct: 159 SALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKV--LLDHF 213

Query: 57  -NPLVRSLIIEGDVKGNTPLHV 77
            N          D     P  +
Sbjct: 214 AN------RDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 17/85 (20%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           T LH A      G+ + +I       +   + G   L  A                 ++ 
Sbjct: 92  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG----------MLE 141

Query: 62  SLIIEG------DVKGNTPLHVLAA 80
            LI         D  G + LH  AA
Sbjct: 142 DLINSHADVNAVDDLGKSALH-WAA 165

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLENNPL 59
           TALHLAA        K ++  + +     DN G   LH A+ +      ++  L+ N   
Sbjct: 59  TALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQI--LIRN--- 112

Query: 60  VRSLII-EGDVKGNTPLHVLAA 80
            R+  +      G TPL  LAA
Sbjct: 113 -RATDLDARMHDGTTPLI-LAA 132

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            TALH A   G+  IV+ ++     +      D+ GW+ LH A  S   +E+   L    
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPVND---KDDAGWSPLHIA-ASAGXDEIVKALLVK- 95

Query: 59  LVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNI-LLNGYP 117
              + +   +  G TPLH  AA +       M+ +  AN DA +  + +  +     G  
Sbjct: 96  --GAHVNAVNQNGCTPLH-YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152

Query: 118 ELKEEIQKLSKDV 130
           ++   +       
Sbjct: 153 KMVHILLFYKAST 165

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 19/137 (13%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN 56
           +   +LA       + + I++           D      LH+A  + + E  E   LL+ 
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATR---TDQDSRTALHWACSAGHTEIVEF--LLQL 62

Query: 57  --NPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNI-LL 113
                    + + D  G +PLH+ AA    +  V+ +    A+ +AVN+   +  +    
Sbjct: 63  GVP------VNDKDDAGWSPLHI-AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115

Query: 114 NGYPELKEEIQKLSKDV 130
               E+   + +   + 
Sbjct: 116 KNRHEIAVMLLEGGANP 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 39/173 (22%)

Query: 11  GYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEE----LGNLLENNPLVRSLI 64
                 + ++     L  Y++  N      H + +   +      L  LL++ P    L+
Sbjct: 190 KNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 65  IEGDVKGNTPLHVLAAVRPDEFDV--RMIRKMQANFDAVNKQNVSVTNILLNG---YPEL 119
           +  +V+             + F++  +++         +  +   VT+ L      +  L
Sbjct: 249 VLLNVQ--NAKAW------NAFNLSCKIL---------LTTRFKQVTDFLSAATTTHISL 291

Query: 120 KEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDTRASHLVVAALIA 172
                 L+ D  +           KYL   +   +D  ++   ++    ++IA
Sbjct: 292 DHHSMTLTPDEVKSLLL-------KYL---DCRPQDLPREVLTTNPRRLSIIA 334

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN--N 57
            L  AA  G V  VK + +        ++ R    LH+A     V   E   LL++  +
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY--LLQHGAD 67

Query: 58 PLVRSLIIEGDVKGNTPLHVLAA 80
                +   D  G  PLH  A 
Sbjct: 68 ------VHAKDKGGLVPLH-NAC 83

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.6 bits (99), Expect = 6e-05
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 22/88 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
            T LH AA    V +V+ ++    ++      D  G   LH A    Y        E   
Sbjct: 43  STPLHFAAGYNRVSVVEYLLQHGADVHA---KDKGGLVPLHNA--CSY-----GHYE--- 89

Query: 59  LVRSLIIEG------DVKGNTPLHVLAA 80
           +   L+  G      D+   TPLH  AA
Sbjct: 90  VAELLVKHGAVVNVADLWKFTPLH-EAA 116

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
             LH A   G+  + + ++     +      D   +  LH A  +          E   +
Sbjct: 77  VPLHNACSYGHYEVAELLVKHGAVVNV---ADLWKFTPLHEA--AAK-----GKYE---I 123

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
            + L+  G      +  GNTPL  L  
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLD-LVK 149

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 22/85 (25%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
           +TALH A       IV  +I+   N+      D+ GW  LH A  +       +      
Sbjct: 55  ITALHNAICGANYSIVDFLITAGANVNS---PDSHGWTPLHCA--ASC----NDT----V 101

Query: 59  LVRSLIIEG------DVK-GNTPLH 76
           +  +L+  G       +  G T   
Sbjct: 102 ICMALVQHGAAIFATTLSDGATAFE 126

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 22/88 (25%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
          +  L  AA  G + +V+  + +  +       +  G   LH A+                
Sbjct: 22 LVLLLDAALTGELEVVQQAVKEMNDPSQ---PNEEGITALHNAICGANYS---------- 68

Query: 59 LVRSLIIEG------DVKGNTPLHVLAA 80
          +V  LI  G      D  G TPLH  AA
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLH-CAA 95

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.6 bits (99), Expect = 5e-05
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 18/85 (21%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN- 56
           + LHLAA  G+    + ++    + +            LH A    +    E+  LL++ 
Sbjct: 36  SPLHLAAQYGHFSTTEVLLRAGVSRDA---RTKVDRTPLHMAASEGHANIVEV--LLKHG 90

Query: 57  -NPLVRSLIIEGDVKGNTPLHVLAA 80
            +      +   D+   T LH  A 
Sbjct: 91  AD------VNAKDMLKMTALH-WAT 108

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.2 bits (98), Expect = 9e-05
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 18/85 (21%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN- 56
           T LH+AA  G+  IV+ ++    ++      D      LH+A    + E  EL  L++  
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNA---KDMLKMTALHWATEHNHQEVVEL--LIKYG 123

Query: 57  -NPLVRSLIIEGDVKGNTPLHVLAA 80
            +      +        T    ++ 
Sbjct: 124 AD------VHTQSKFCKTAFD-ISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 19/85 (22%)

Query: 2  TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN- 56
            L  AA  G    V+ +++           D  G + LH A    +    E+  LL   
Sbjct: 4  KKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEV--LLRAG 57

Query: 57 -NPLVRSLIIEGDVKGNTPLHVLAA 80
           +               TPLH +AA
Sbjct: 58 VS------RDARTKVDRTPLH-MAA 75

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 7e-05
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 18/85 (21%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN- 56
           T L+LA   G++ IV+ ++    ++     VD  G+  LH A    ++E  E+  LL++ 
Sbjct: 49  TPLYLATAHGHLEIVEVLLKNGADVNA---VDAIGFTPLHLAAFIGHLEIAEV--LLKHG 103

Query: 57  -NPLVRSLIIEGDVKGNTPLHVLAA 80
            +      +   D  G T    ++ 
Sbjct: 104 AD------VNAQDKFGKTAFD-ISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.8 bits (97), Expect = 8e-05
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN--N 57
            L  AA  G    V+ +++   +     D  G   L+ A    ++E  E+  LL+N  +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEV--LLKNGAD 72

Query: 58 PLVRSLIIEGDVKGNTPLHVLAA 80
                +   D  G TPLH LAA
Sbjct: 73 ------VNAVDAIGFTPLH-LAA 88

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 8e-05
 Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 17/85 (20%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           TAL   A  G    V+ +     +        G   LH A      E          +V 
Sbjct: 78  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE----------VVE 127

Query: 62  SLIIEG------DVKGNTPLHVLAA 80
           +L+  G      D +G T L  LA 
Sbjct: 128 ALVELGADIEVEDERGLTALE-LAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           T    AA +     +  ++   +++    VD  G   L +   +      G+       V
Sbjct: 46  TPWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFV--AGL----GSD----KCV 92

Query: 61  RSLIIEG------DVK-GNTPLHVLAA 80
           R L   G      D++ G T LH +AA
Sbjct: 93  RLLAEAGADLDHRDMRGGLTALH-MAA 118

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLEN 56
           +TALH+AA      +V+A++    +  E+ D RG   L  A         GN ++ 
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 10/86 (11%), Positives = 18/86 (20%), Gaps = 22/86 (25%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
               +    G+            +    V +        A             + +   
Sbjct: 15 AMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTA-----------ARKADEQA 59

Query: 61 RSLIIEG------DVKGNTPLHVLAA 80
           S ++E       D  G T L    A
Sbjct: 60 LSQLLEDRDVDAVDENGRTALL-FVA 84

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 18/85 (21%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN- 56
           TAL  A     +GI + ++SK  N+      D  G   L ++++  Y E      LLE+ 
Sbjct: 70  TALIWAVKNNRLGIAEKLLSKGSNV---NTKDFSGKTPLMWSIIFGYSEMSYF--LLEHG 124

Query: 57  -NPLVRSLIIEGDVKGNTPLHVLAA 80
            N      + + +++G TPL  +A+
Sbjct: 125 AN------VNDRNLEGETPLI-VAS 142

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T L  +   GY  +   ++    N+      +  G   L  A  S Y        E   +
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVND---RNLEGETPLIVA--SKY-----GRSE---I 149

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
           V+ L+  G      D+ G T     A 
Sbjct: 150 VKKLLELGADISARDLTGLTAEA-SAR 175

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
           T L +A   G    +  ++     L   E  D  G   L +A          N L    +
Sbjct: 37  TPLMVACMLGMENAIDKLVENFDKL---EDKDIEGSTALIWA--VKN-----NRLG---I 83

Query: 60  VRSLIIEG------DVKGNTPLHVLAA 80
              L+ +G      D  G TPL   + 
Sbjct: 84  AEKLLSKGSNVNTKDFSGKTPLM-WSI 109

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.9 bits (97), Expect = 9e-05
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 49/118 (41%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGN------ 52
              L  AA RG V  V+ ++    +      ++  G   +   M       +G+      
Sbjct: 13  DAGLATAAARGQVETVRQLLEAGADPNA---LNRFGRRPIQVMM-------MGSAQVAEL 62

Query: 53  LLEN-------------NPL-----------VRSLIIEG------DVKGNTPLHVLAA 80
           LL +              P+           +  L   G      D  G  P+  LA 
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVD-LAE 119

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 17/84 (20%)

Query: 2  TALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVE--ELGNLLEN- 56
            L  AA  G    V+ +++   ++      D  G   LH A  + ++E  +L  LLE  
Sbjct: 26 KKLLEAARAGQDDEVRILMANGADVAA---KDKNGSTPLHLAARNGHLEVVKL--LLEAG 80

Query: 57 -NPLVRSLIIEGDVKGNTPLHVLA 79
           +      +   D  G T   +  
Sbjct: 81 AD------VXAQDKFGKTAFDISI 98

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 17/85 (20%)

Query: 2   TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR 61
           TAL   A  G    V+ +     +        G   LH A      E          +V 
Sbjct: 79  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE----------VVE 128

Query: 62  SLIIEG------DVKGNTPLHVLAA 80
           +L+  G      D +G T L  LA 
Sbjct: 129 ALVELGADIEVEDERGLTALE-LAR 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 23/100 (23%)

Query: 1   MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYAMVSFYVEELGNLLEN-- 56
           +TALH+AA      +V+A++    ++   E+ D RG   L  A         GN ++   
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADI---EVEDERGLTALELAREILKTTPKGNPMQFGR 168

Query: 57  -------NPLVRSL---------IIEGDVKGNTPLHVLAA 80
                    ++            I+E   KG    +++  
Sbjct: 169 RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRW 208

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 22/87 (25%)

Query: 2   TALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           T    AA +     +  ++   +++    VD  G   L +   +      G+       V
Sbjct: 47  TPWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFV--AGL----GSD----KCV 93

Query: 61  RSLIIEG------DVK-GNTPLHVLAA 80
           R L   G      D++ G T LH +AA
Sbjct: 94  RLLAEAGADLDHRDMRGGLTALH-MAA 119

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 13/85 (15%)

Query: 2   TALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFY-----VEELGNLLE 55
            A  LAA+ G++ ++  +      E   ++    ++    A  +       +     L E
Sbjct: 130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA--AENGHLHVLNR---LCE 184

Query: 56  NNPLVRSLIIEGDVKGNTPLHVLAA 80
             P   + +I    +        A 
Sbjct: 185 LAPTEATAMI--QAENYYAFRWAAV 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.9
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
2etb_A	256	Transient receptor potential cation channel subfam	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.9
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.89
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.89
2rfa_A	232	Transient receptor potential cation channel subfa	99.89
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.89
2rfa_A	232	Transient receptor potential cation channel subfa	99.89
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.89
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.89
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.89
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.88
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.88
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.88
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.88
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.88
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.88
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.88
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.88
2etb_A	256	Transient receptor potential cation channel subfam	99.87
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.87
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.87
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.87
2pnn_A	273	Transient receptor potential cation channel subfa	99.87
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.87
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.87
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.86
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.86
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.86
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.86
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.86
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.85
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.85
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.85
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.85
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.84
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.84
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.83
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.82
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.82
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.81
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.8
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.8
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.79
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.77
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.77
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.76
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.71
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.7
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.7
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.7
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.68

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=2.1e-27  Score=197.67  Aligned_cols=129  Identities=22%  Similarity=0.199  Sum_probs=98.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ++|+.||+.|+.++|+.|+++|+|+ +.+|.+|+||||+|+..++.++++.|++.    |++++.+|.+|+||||+|+..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc----ccchhhhccCCCCHHHHHHHc
Confidence            3677888888888888888888777 66777788888888888887777777777    777777777788888888877


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      |+.+++ ++|+++|+|+|.+|.+|+||||+|+..   +..+++++|++.|+++...+.
T Consensus        81 g~~~~v-~~Ll~~gadvn~~d~~G~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A           81 GHKEVV-KLLISKGADVNAKDSDGRTPLHHAAEN---GHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHH-HHHHHCcCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCccccCC
Confidence            777777 777777777777777788888887777   445777777777776654443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=3.3e-26  Score=190.50  Aligned_cols=126  Identities=25%  Similarity=0.253  Sum_probs=117.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~----gadvn~~d~~G~TpLh~A~~  112 (169)
T 4gpm_A           38 RTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAAE  112 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 78899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++|+|++.+|.+|+|||++|+..   +..+++++|+++|++-.
T Consensus       113 ~g~~~~v-~~Ll~~gad~~~~d~~G~TpL~~A~~~---g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          113 NGHKEVV-KLLISKGADVNTSDSDGRTPLDLAREH---GNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHTC-----
T ss_pred             cCCHHHH-HHHHHcCCCccccCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCcC
Confidence            9999999 999999999999999999999999999   55689999999998654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=2.1e-26  Score=184.06  Aligned_cols=123  Identities=15%  Similarity=0.077  Sum_probs=117.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCC-CCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVK-GNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~-G~TpLH~Aa   79 (326)
                      +||||+|++.|+.++++.|+++++++ +.+|..|+||||+|+. |+.+++++|++.    |+++|.+|.+ |+||||+|+
T Consensus        13 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~   86 (136)
T 1d9s_A           13 DAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLH----GAEPNCADPATLTRPVHDAA   86 (136)
T ss_dssp             SCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH----TCCSSCCBTTTTBCHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC----CCCCCCcCCCCCCCHHHHHH
Confidence            59999999999999999999999998 7789999999999999 999999999999    9999999999 999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      ..|+.+++ ++|+++|++++.+|.+|+||||+|...   +..+++++|+++|++
T Consensus        87 ~~~~~~~v-~~Ll~~ga~~~~~d~~g~tpl~~A~~~---~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           87 REGFLDTL-VVLHRAGARLDVCDAWGRLPVDLAEEQ---GHRDIARYLHAATGD  136 (136)
T ss_dssp             HHTCHHHH-HHHHHTCCCCCCCSSSSSCHHHHHHHH---TCHHHHHHHHHHHCC
T ss_pred             HcCCHHHH-HHHHHcCCCCCccCCCCCCHHHHHHHc---CCHHHHHHHHHcCCC
Confidence            99999999 999999999999999999999999998   556899999998864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=7e-26  Score=181.02  Aligned_cols=122  Identities=22%  Similarity=0.223  Sum_probs=115.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||+.|+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN----GADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHH
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHH
Confidence            38999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      .|+.+++ ++|+++|++++.+|.+|+||+++|+..   +..+++++|++.|
T Consensus        90 ~~~~~~v-~~Ll~~g~~~~~~~~~g~tpl~~A~~~---~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIA-EVLLKHGADVNAQDKFGKTAFDISIGN---GNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHC-
T ss_pred             cCCHHHH-HHHHHcCCCCcCcCCCCCCHHHHHHHC---CCHHHHHHHHHcC
Confidence            9999999 999999999999999999999999999   5568899888764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.3e-25  Score=173.40  Aligned_cols=124  Identities=27%  Similarity=0.292  Sum_probs=118.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|++.|+.++++.|+++++++ +..|..|+||||+|+.+|+.+++++|++.    |.+++.+|..|+||||+|+.
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            3 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHc----CCCCcccCCCCCcHHHHHHH
Confidence            69999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      .++.+++ ++|+++|++++.+|.+|.||+++|...   +..+++++|.++|++
T Consensus        78 ~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~A~~~---~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARN---GHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHTCC
T ss_pred             cChHHHH-HHHHHcCCCCcccCCCCCCHHHHHHHc---CcHHHHHHHHHcCCC
Confidence            9999999 999999999999999999999999998   567999999998864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.2e-25  Score=179.70  Aligned_cols=123  Identities=20%  Similarity=0.241  Sum_probs=112.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        11 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A           11 ETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQH----KALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCGGGCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCcccCcCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||+++|...   +..++++++.+.+.
T Consensus        86 ~~~~~~v-~~Ll~~ga~~~~~~~~g~tpl~~A~~~---~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           86 NGHVDIV-KLLLSYGASRNAVNIFGLRPVDYTDDE---SMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCGGGGCCCH---HHHHHHSCC-----
T ss_pred             cCCHHHH-HHHHHcCCCCCCCCCCCCCHHHHHhhc---cHHHHHhhcccccc
Confidence            9999999 999999999999999999999999877   77788877766543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=9.8e-25  Score=182.34  Aligned_cols=126  Identities=15%  Similarity=0.111  Sum_probs=62.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||.||+.|+.++++.|++.++...+..|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+..
T Consensus         7 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR----GARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHc
Confidence            4455555555555555555543332344455555555555555555555555554    455555555555555555555


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++.
T Consensus        83 ~~~~~v-~~Ll~~g~~~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~  132 (179)
T 3f6q_A           83 GHRDIV-QKLLQYKADINAVNEHGNVPLHYACFW---GQDQVAEDLVANGALVS  132 (179)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCSS
T ss_pred             CCHHHH-HHHHHcCCCCCccCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCcc
Confidence            555544 555555555555555555555555544   22344455555444443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.92  E-value=5.1e-25  Score=182.62  Aligned_cols=130  Identities=13%  Similarity=0.061  Sum_probs=111.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .||||.|+..|+.++++.|++.+++..+.+|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW----GADPHILAKERESALSLAST   78 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHHHH
Confidence            47899999999999999999988886678888899999999999999999999988    88889889999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      .++.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++...+
T Consensus        79 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~  132 (172)
T 3v30_A           79 GGYTDIV-GLLLERDVDINIYDWNGGTPLLYAVRG---NHVKCVEALLARGADLTTEA  132 (172)
T ss_dssp             TTCHHHH-HHHHTTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCccccC
Confidence            9988888 888889999999999999999999888   55688888888887776443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=6.2e-25  Score=172.30  Aligned_cols=109  Identities=19%  Similarity=0.084  Sum_probs=104.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|++.|+.++++.|++.++++ +.+|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK----GADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHH
Confidence            38999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~  115 (326)
                      .++.+++ ++|+++|++++.+|.+|+||+++|...
T Consensus        83 ~~~~~~v-~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           83 EGHVSCV-KLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             cCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            9999999 999999999999999999999999543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.1e-25  Score=182.46  Aligned_cols=126  Identities=16%  Similarity=0.063  Sum_probs=115.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCc-HHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNT-PLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~T-pLH~Aa   79 (326)
                      +||||+|++.|+.++++.|+++++++ +.+|..|+||||+|+ +|+.+++++|++.    |+++|.+|.+|+| |||+|+
T Consensus        13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~----g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           13 ADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH----GAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT----TCCCCCCCTTTCCCHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHH
Confidence            58999999999999999999999998 778999999999985 9999999999999    9999999999999 999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      ..|+.+++ ++|+++|++++.+|.+|+||||+|+..   +..+++++|++.|+++..
T Consensus        87 ~~~~~~~v-~~Ll~~ga~~~~~d~~g~tpl~~A~~~---~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           87 REGFLDTL-VVLHRAGARLDVRDAWGRLPVDLAEEL---GHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             HHTCHHHH-HHHHHHTCCSSCCCTTCCCHHHHHHHH---TCHHHHHHHSSCC-----
T ss_pred             HCCCHHHH-HHHHHcCCCCcccCCCCCCHHHHHHHh---CHHHHHHHHHHcCCCCCc
Confidence            99999999 999999999999999999999999998   556999999999988763

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=2e-24  Score=178.19  Aligned_cols=126  Identities=13%  Similarity=0.079  Sum_probs=119.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||.|+..|+.++++.|++.++++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|..|+||||+|+.
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN----GADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHH
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHH
Confidence            58999999999999999999999987 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++.
T Consensus        79 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           79 KGYTDIV-KMLLDCGVDVNEYDWNGGTPLLYAVHG---NHVKCVKMLLESGADPT  129 (167)
T ss_dssp             HTCHHHH-HHHHHHTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHH-HHHHHCCCCCCcCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCC
Confidence            9999999 999999999999999999999999999   56689999999998776

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=1.3e-24  Score=178.96  Aligned_cols=131  Identities=21%  Similarity=0.121  Sum_probs=117.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||.|++.|+.++++.|++.++......|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc----CCCCCccCCCCCCHHHHHHH
Confidence            37999999999999999999877655577788899999999999999999999998    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++...+.
T Consensus        85 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           85 YGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAK---GKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCcHHHH-HHHHhCCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCcccCC
Confidence            9999998 999999999999999999999999998   556899999999988765444

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=1.6e-24  Score=176.43  Aligned_cols=128  Identities=18%  Similarity=0.103  Sum_probs=118.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||.|++.|+.++++.|++++++. + .|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+..
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHc
Confidence            7999999999999999999999987 3 588999999999999999999999998    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      |+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++...+.
T Consensus        78 ~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~  131 (153)
T 1awc_B           78 GHANIV-EVLLKHGADVNAKDMLKMTALHWATEH---NHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             TCHHHH-HHHHTTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCT
T ss_pred             ChHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCccccCC
Confidence            999999 999999999999999999999999998   556899999999988765544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=2.2e-24  Score=178.66  Aligned_cols=129  Identities=22%  Similarity=0.186  Sum_probs=120.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||.||+.|+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+..
T Consensus        16 ~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           16 KKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN----GADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHT
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHHc
Confidence            7999999999999999999999998 77899999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      |+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++...+.
T Consensus        91 ~~~~~~-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~  144 (169)
T 2y1l_E           91 GHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMF---GHLEIVEVLLKNGADVNAQDK  144 (169)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCCcCC
Confidence            999999 999999999999999999999999998   556899999999988765443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=3e-24  Score=177.96  Aligned_cols=126  Identities=16%  Similarity=0.111  Sum_probs=118.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  111 (172)
T 3v30_A           37 FTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLER----DVDINIYDWNGGTPLLYAVR  111 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||+|+|...   +..+++++|++.+.+..
T Consensus       112 ~~~~~~v-~~Ll~~ga~~~~~~~~g~t~l~~A~~~---~~~~~~~~L~~~~~~~~  162 (172)
T 3v30_A          112 GNHVKCV-EALLARGADLTTEADSGYTPMDLAVAL---GYRKVQQVIENHILKLF  162 (172)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred             cCCHHHH-HHHHHcCCCccccCCCCCCHHHHHHHh---CcHHHHHHHHHHHHHHh
Confidence            9999999 999999999999999999999999999   55689999998776544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=1.2e-24  Score=178.31  Aligned_cols=123  Identities=14%  Similarity=0.056  Sum_probs=113.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||.|++.|+.++++.|+++++++ +.+|..|+||||+|+. |+.+++++|++.    |++++.+|.+|+||||+|+..
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLR----GANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHc
Confidence            7999999999999999999999998 7779999999999999 999999999998    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      |+.+++ ++|+++|++++.+|.+|+||||+|+..   +..+++++|++.|+++
T Consensus        81 ~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~  129 (162)
T 1ihb_A           81 GFLDTL-QTLLEFQADVNIEDNEGNLPLHLAAKE---GHLRVVEFLVKHTASN  129 (162)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHSCCC
T ss_pred             CCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHccCCC
Confidence            999998 999999999999999999999999998   5568999999988875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.91  E-value=3.3e-24  Score=191.53  Aligned_cols=130  Identities=17%  Similarity=0.120  Sum_probs=122.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|++.++++ +.++.+|.||+|+|+..++.++++.|++.    |+++|.+|.+|+||||+|+.
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~----g~~~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS----NAKPNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      .|+.+++ ++|+++|+|+|.+|.+|.||||+|+..   +..+++++|++.|+++...+.
T Consensus       162 ~g~~~~v-~~Ll~~gadvn~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~Gad~~~~d~  216 (269)
T 4b93_B          162 GGHHELV-ALLLQHGASINASNNKGNTALHEAVIE---KHVFVVELLLLHGASVQVLNK  216 (269)
T ss_dssp             TTCGGGH-HHHHHTTCCTTCBCTTSCBHHHHHHHT---TCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCCHHHH-HHHHHCCCCCCccccCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCcCC
Confidence            9999999 999999999999999999999999999   556899999999998875443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=4.7e-24  Score=176.61  Aligned_cols=122  Identities=26%  Similarity=0.341  Sum_probs=115.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +..|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        48 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~  122 (169)
T 2y1l_E           48 WTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKN----GADVNANDMEGHTPLHLAAM  122 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHH
Confidence            58999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||+++|...   +..+++++|++.|
T Consensus       123 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~l~~A~~~---~~~~~~~~L~~~G  169 (169)
T 2y1l_E          123 FGHLEIV-EVLLKNGADVNAQDKFGKTAFDISIDN---GNEDLAEILQKLN  169 (169)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHTC-
T ss_pred             cCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHh---CCHHHHHHHHHcC
Confidence            9999999 999999999999999999999999999   5568888888754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=1.7e-24  Score=182.80  Aligned_cols=127  Identities=20%  Similarity=0.132  Sum_probs=119.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  110 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK----GSNVNTKDFSGKTPLMWSII  110 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++..
T Consensus       111 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A          111 FGYSEMS-YFLLEHGANVNDRNLEGETPLIVASKY---GRSEIVKKLLELGADISA  162 (192)
T ss_dssp             HTCHHHH-HHHHHTTCCSSCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCTTC
T ss_pred             cCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCC
Confidence            9999999 999999999999999999999999998   556899999999887763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=5.5e-24  Score=173.22  Aligned_cols=118  Identities=18%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        35 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  109 (153)
T 1awc_B           35 TSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKH----GADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHH
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLS  127 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L  127 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||+++|...+   ..+++++|
T Consensus       110 ~~~~~~v-~~Ll~~ga~~~~~~~~g~t~l~~A~~~~---~~~i~~~L  152 (153)
T 1awc_B          110 HNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNG---NEDLAEIL  152 (153)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHHH
T ss_pred             cCCHHHH-HHHHHcCCCccccCCCCCCHHHHHHHcC---CHHHHHHh
Confidence            9999999 9999999999999999999999999994   45666665

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=3.5e-24  Score=180.84  Aligned_cols=122  Identities=22%  Similarity=0.240  Sum_probs=115.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        69 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  143 (192)
T 2rfm_A           69 STALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEH----GANVNDRNLEGETPLIVASK  143 (192)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCSSCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||+++|...   +..+++++|.+.|
T Consensus       144 ~~~~~~v-~~Ll~~ga~~~~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          144 YGRSEIV-KKLLELGADISARDLTGLTAEASARIF---GRQEVIKIFTEVR  190 (192)
T ss_dssp             HTCHHHH-HHHHHTTCCTTCBCTTSCBHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             cCCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHh---CcHHHHHHHHhcc
Confidence            9999999 999999999999999999999999999   5568888888754

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=9.1e-24  Score=176.41  Aligned_cols=126  Identities=19%  Similarity=0.205  Sum_probs=121.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~A~~  114 (179)
T 3f6q_A           40 FSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQY----KADINAVNEHGNVPLHYACF  114 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||+++|...   ...+++++|.+.|+++.
T Consensus       115 ~~~~~~v-~~Ll~~ga~~~~~~~~g~tpl~~A~~~---~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          115 WGQDQVA-EDLVANGALVSICNKYGEMPVDKAKAP---LRELLRERAEKMGQNLN  165 (179)
T ss_dssp             TTCHHHH-HHHHHTTCCSSBCCTTSCCGGGGSCHH---HHHHHHHHHHHTTCCCS
T ss_pred             cCCHHHH-HHHHHCCCCcchhccCCCCcHHHHHHH---HHHHHHHHHHHhhcCcc
Confidence            9999999 999999999999999999999999887   88899999999998876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=4.7e-24  Score=175.91  Aligned_cols=124  Identities=17%  Similarity=0.131  Sum_probs=116.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +..|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  111 (167)
T 3v31_A           37 FTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDC----GVDVNEYDWNGGTPLLYAVH  111 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCCCcCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||+++|...   +..+++++|.+++.+
T Consensus       112 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~l~~A~~~---~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          112 GNHVKCV-KMLLESGADPTIETDSGYNSMDLAVAL---GYRSVQQVIESHLLK  160 (167)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHHHHHH
T ss_pred             cCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHc---CcHHHHHHHHHHHHH
Confidence            9999999 999999999999999999999999998   556888888876543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=9.4e-24  Score=173.76  Aligned_cols=122  Identities=22%  Similarity=0.214  Sum_probs=113.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  117 (165)
T 3twr_A           43 STPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKH----GAVVNVADLWKFTPLHEAAA  117 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcCcHHHHHHHHhC----CCCCCCcCCCCCCHHHHHHH
Confidence            49999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      .|+.+++ ++|+++|++++.+|.+|+||+++|.. +   ..+++++|.+.|+
T Consensus       118 ~~~~~~v-~~Ll~~ga~~~~~~~~g~t~l~~a~~-~---~~~i~~~L~~~gA  164 (165)
T 3twr_A          118 KGKYEIC-KLLLQHGADPTKKNRDGNTPLDLVKD-G---DTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCTGGGSCT-T---CHHHHHHHHTC--
T ss_pred             cCCHHHH-HHHHHcCCCCcccCCCCCChhHhHhc-C---ChHHHHHHhhccc
Confidence            9999999 99999999999999999999999876 3   3489999988764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.90  E-value=1.5e-23  Score=181.02  Aligned_cols=129  Identities=20%  Similarity=0.187  Sum_probs=90.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhC--CcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKN--LECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVL   78 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~--~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~A   78 (326)
                      +||||+|+..|+.++++.|++++  +++ +..|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|
T Consensus        73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A  147 (228)
T 2dzn_A           73 WTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIEN----GASVRIKDKFNQIPLHRA  147 (228)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHc----CCCccccCCCCCCHHHHH
Confidence            36666666666666666666666  454 45566666777777776777777766666    777777777777777777


Q ss_pred             HhcCCchHHHHHHhhcc-cCcccccccCcCHHHhHhhCCCchHHHHHHHHH-HcCCCCCCCC
Q 020462           79 AAVRPDEFDVRMIRKMQ-ANFDAVNKQNVSVTNILLNGYPELKEEIQKLSK-DVGRGQYSDG  138 (326)
Q Consensus        79 a~~~~~~~v~~lLl~~g-~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~-~~g~~~~~~~  138 (326)
                      +..|+.+++ ++|++.| ++++.+|.+|+||||+|+..   +..+++++|+ +.|+++...+
T Consensus       148 ~~~~~~~~v-~~Ll~~g~~~~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~~ga~~~~~~  205 (228)
T 2dzn_A          148 ASVGSLKLI-ELLCGLGKSAVNWQDKQGWTPLFHALAE---GHGDAAVLLVEKYGAEYDLVD  205 (228)
T ss_dssp             HHTTCHHHH-HHHHTTTCCCSCCCCTTSCCHHHHHHHT---TCHHHHHHHHHHHCCCSCCBC
T ss_pred             HHcCCHHHH-HHHHhcCcccccCcCCCCCCHHHHHHHc---CCHHHHHHHHHhcCCCCCccC
Confidence            777777777 7777777 77777777777777777777   4457777777 6676665433

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=4.4e-24  Score=190.19  Aligned_cols=126  Identities=21%  Similarity=0.183  Sum_probs=114.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccC--------------CCccHHHHHHHcCChhHHHHHHh---cCcccccc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDN--------------RGWNFLHYAMVSFYVEELGNLLE---NNPLVRSL   63 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~--------------~G~tpLh~A~~~g~~~vv~~Ll~---~~~~~g~~   63 (326)
                      +||||+|+..|+.++++.|+++|+++ +.+|.              .|+||||+|+.+|+.+++++|++   .    |++
T Consensus       102 ~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~----gad  176 (273)
T 2pnn_A          102 QTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ----PAD  176 (273)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSC----CCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccC----CCC
Confidence            59999999999999999999999998 66666              79999999999999999999999   8    999


Q ss_pred             ccccCCCCCcHHHHHHhcCC---------chHHHHHHhhcccCcc-------cccccCcCHHHhHhhCCCchHHHHHHHH
Q 020462           64 IIEGDVKGNTPLHVLAAVRP---------DEFDVRMIRKMQANFD-------AVNKQNVSVTNILLNGYPELKEEIQKLS  127 (326)
Q Consensus        64 in~~d~~G~TpLH~Aa~~~~---------~~~v~~lLl~~g~d~~-------~~n~~g~TpL~~A~~~~~~~~~~i~~~L  127 (326)
                      +|.+|.+|+||||+|+..++         .+++ ++|+++|++++       .+|.+|+||||+|+..   +..+++++|
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v-~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~---g~~~iv~~L  252 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMY-NEILILGAKLHPTLKLEEITNRKGLTPLALAASS---GKIGVLAYI  252 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH-HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT---TCHHHHHHH
T ss_pred             ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH-HHHHHhhhhcccccccccccCCCCCCHHHHHHHh---ChHHHHHHH
Confidence            99999999999999999888         5677 99999999997       5999999999999999   567999999


Q ss_pred             HHcCC-CCC
Q 020462          128 KDVGR-GQY  135 (326)
Q Consensus       128 ~~~g~-~~~  135 (326)
                      +++|+ +|.
T Consensus       253 l~~ga~dp~  261 (273)
T 2pnn_A          253 LQREIHEPE  261 (273)
T ss_dssp             HHHHTC---
T ss_pred             HHCCCCCch
Confidence            99998 555

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=4.1e-24  Score=184.72  Aligned_cols=127  Identities=17%  Similarity=0.128  Sum_probs=111.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|++.++++ +.+|..|+||||+|+.+|+.+++++|++.   .|+++|.+|.+|+||||+|+.
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHHHHHH
Confidence            58999999999999999999999998 77899999999999999999999999986   489999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++|++++.+|.+|+||+++|...   +..++++.|.+.++.+.
T Consensus       150 ~~~~~~v-~~Ll~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          150 KGYADIV-QLLLAKGARTDLRNIEKKLAFDMATNA---ACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HTCHHHH-HHHHHHTCCSCCCCTTSCCHHHHCCSH---HHHHHHC----------
T ss_pred             cCCHHHH-HHHHHcCCCCccccCCCCCHHHHhcch---hHHHHHHHHhccchhhh
Confidence            9999999 999999999999999999999999987   88899999998887655

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.90  E-value=6.7e-24  Score=173.86  Aligned_cols=123  Identities=23%  Similarity=0.276  Sum_probs=115.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+. |+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        39 ~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  112 (162)
T 1ihb_A           39 RTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEF----QADVNIEDNEGNLPLHLAAK  112 (162)
T ss_dssp             CCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHH
Confidence            599999999 9999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccC-cccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           81 VRPDEFDVRMIRKMQAN-FDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d-~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      .|+.+++ ++|+++|++ ++.+|.+|.||+++|...   +..+++++|+++|++
T Consensus       113 ~~~~~~v-~~Ll~~g~~~~~~~~~~g~t~l~~A~~~---~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          113 EGHLRVV-EFLVKHTASNVGHRNHKGDTACDLARLY---GRNEVVSLMQANGAG  162 (162)
T ss_dssp             TTCHHHH-HHHHHHSCCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTC--
T ss_pred             cCCHHHH-HHHHHccCCCCCCcCCCCCcHHHHHHHc---CCHHHHHHHHHhCCC
Confidence            9999999 999999998 599999999999999999   567999999998864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=7.6e-24  Score=184.64  Aligned_cols=127  Identities=17%  Similarity=0.089  Sum_probs=119.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||+||+.|+.++++.|++.++++ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+..
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~----ga~~n~~d~~g~tpLh~A~~~   97 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITA----GANVNSPDSHGWTPLHCAASC   97 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHc
Confidence            7899999999999999999999998 77899999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCccccc-ccCcCHHHhH--hhCCCchHHHHHHHHHHcCCCCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVN-KQNVSVTNIL--LNGYPELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n-~~g~TpL~~A--~~~~~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      |+.+++ ++|++.|++++.++ .+|+|||++|  +..   +..+++++|++.|+++...
T Consensus        98 g~~~~v-~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~---~~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A           98 NDTVIC-MALVQHGAAIFATTLSDGATAFEKCDPYRE---GYADCATYLADVEQSMGLM  152 (229)
T ss_dssp             TCHHHH-HHHHTTTCCTTCCCSSTTCCTGGGCCTTST---THHHHHHHHHHHHHHTTTS
T ss_pred             CCHHHH-HHHHHcCCCcccccCCCCCCHHHHHHHHhc---ChHHHHHHHHHcCCCcccc
Confidence            999999 99999999999997 6999999999  777   7789999999988776643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=8.2e-24  Score=186.54  Aligned_cols=125  Identities=22%  Similarity=0.192  Sum_probs=115.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCC-------------CccHHHHHHHcCChhHHHHHHh---cCccccccc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNR-------------GWNFLHYAMVSFYVEELGNLLE---NNPLVRSLI   64 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~-------------G~tpLh~A~~~g~~~vv~~Ll~---~~~~~g~~i   64 (326)
                      +||||+|+..|+.++++.|+++|+++ +.+|..             |+||||+|+.+|+.+++++|++   .    |+++
T Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~----ga~~  165 (256)
T 2etb_A           91 HSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ----PASL  165 (256)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC----CCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc----CCCc
Confidence            59999999999999999999999998 666765             9999999999999999999999   7    9999


Q ss_pred             cccCCCCCcHHHHHHh--cCCch-------HHHHHHhhcccCc-------ccccccCcCHHHhHhhCCCchHHHHHHHHH
Q 020462           65 IEGDVKGNTPLHVLAA--VRPDE-------FDVRMIRKMQANF-------DAVNKQNVSVTNILLNGYPELKEEIQKLSK  128 (326)
Q Consensus        65 n~~d~~G~TpLH~Aa~--~~~~~-------~v~~lLl~~g~d~-------~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~  128 (326)
                      |.+|.+|+||||+|+.  .++.+       ++ ++|+++|+++       +.+|.+|+||||+|+..   +..+++++|+
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv-~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll  241 (256)
T 2etb_A          166 EATDSLGNTVLHALVMIADNSPENSALVIHMY-DGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE---GKIEIFRHIL  241 (256)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH-HHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT---TCHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHcccCCchhhHHHHHHH-HHHHHcCCCcccccccccccCCCCCCHHHHHHHh---CCHHHHHHHH
Confidence            9999999999999999  77777       77 9999999999       99999999999999999   5669999999


Q ss_pred             HcCCCC
Q 020462          129 DVGRGQ  134 (326)
Q Consensus       129 ~~g~~~  134 (326)
                      ++|..+
T Consensus       242 ~~g~~~  247 (256)
T 2etb_A          242 QREFSG  247 (256)
T ss_dssp             HHHHHH
T ss_pred             hCCCCC
Confidence            977543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=7.1e-24  Score=187.24  Aligned_cols=126  Identities=21%  Similarity=0.148  Sum_probs=115.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccccccc--------------CCCccHHHHHHHcCChhHHHHHHh---cCcccccc
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVD--------------NRGWNFLHYAMVSFYVEELGNLLE---NNPLVRSL   63 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d--------------~~G~tpLh~A~~~g~~~vv~~Ll~---~~~~~g~~   63 (326)
                      +||||+||..|+.++++.|+++|+++ +.+|              ..|+||||+|+.+|+.+++++|++   .    |++
T Consensus        94 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~----ga~  168 (260)
T 3jxi_A           94 QTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK----QAD  168 (260)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC----CCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc----CCC
Confidence            59999999999999999999999998 6666              689999999999999999999999   7    999


Q ss_pred             ccccCCCCCcHHHHHHhcCC---------chHHHHHHhhcccCc-------ccccccCcCHHHhHhhCCCchHHHHHHHH
Q 020462           64 IIEGDVKGNTPLHVLAAVRP---------DEFDVRMIRKMQANF-------DAVNKQNVSVTNILLNGYPELKEEIQKLS  127 (326)
Q Consensus        64 in~~d~~G~TpLH~Aa~~~~---------~~~v~~lLl~~g~d~-------~~~n~~g~TpL~~A~~~~~~~~~~i~~~L  127 (326)
                      +|.+|.+|+||||+|+..++         .+++ ++|+++|+++       +.+|.+|+||||+|+..   +..+++++|
T Consensus       169 ~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v-~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~---g~~~~v~~L  244 (260)
T 3jxi_A          169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMY-DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT---GKIGIFQHI  244 (260)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH-HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT---TCHHHHHHH
T ss_pred             CcccCCCCCcHHHHHHHhccCchhHHHHHHHHH-HHHHHhCcccccccchhhcccCCCCCHHHHHHHc---CCHHHHHHH
Confidence            99999999999999998877         4677 9999999999       78999999999999999   566999999


Q ss_pred             HHcCCCCC
Q 020462          128 KDVGRGQY  135 (326)
Q Consensus       128 ~~~g~~~~  135 (326)
                      +++|..+.
T Consensus       245 l~~g~~~~  252 (260)
T 3jxi_A          245 IRREIADA  252 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHhCCCcc
Confidence            99886543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.90  E-value=6.9e-24  Score=189.41  Aligned_cols=124  Identities=22%  Similarity=0.190  Sum_probs=110.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||+|.|+..|+.++++.|++.++++ +.+|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus       120 ~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~----gadvn~~~~~g~t~Lh~A~~  194 (269)
T 4b93_B          120 AVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQH----GASINASNNKGNTALHEAVI  194 (269)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHT----TCCTTCBCTTSCBHHHHHHH
T ss_pred             CCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHC----CCCCCccccCCCcHHHHHHH
Confidence            58999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      .|+.+++ ++|+++|+|++.+|.+|+||||+|.+++  ...++++.+.+.++
T Consensus       195 ~g~~~~v-~~Ll~~Gad~~~~d~~G~TpL~~A~~~~--~i~~lL~~l~~~~~  243 (269)
T 4b93_B          195 EKHVFVV-ELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELLQVVPSCVA  243 (269)
T ss_dssp             TTCHHHH-HHHHHTTCCSCCCCTTSCCSGGGSCTTC--HHHHHTTC------
T ss_pred             cCCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHhCC--cHHHHHHHHHHhch
Confidence            9999999 9999999999999999999999998764  23455555555443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=1.5e-23  Score=170.85  Aligned_cols=126  Identities=15%  Similarity=0.106  Sum_probs=111.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCC-cccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            2 TALHLAADRGYVGIVKAIISKNL-ECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~-d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      ||||.|++.|+.++++.|++..+ ++ +..|..|+||||+ +.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQ----GASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHH
Confidence            79999999999999999999832 44 7789999999999 999999999999998    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      .|+.+++ ++|+++|++++.+|.+|+||||+|+..   +..+++++|++. +++...+
T Consensus        78 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~-~~~~~~~  130 (156)
T 1bd8_A           78 TGFLDTL-KVLVEHGADVNVPDGTGALPIHLAVQE---GHTAVVSFLAAE-SDLHRRD  130 (156)
T ss_dssp             TTCHHHH-HHHHHTTCCSCCCCTTSCCHHHHHHHH---TCHHHHHHHHTT-SCTTCCC
T ss_pred             cCcHHHH-HHHHHcCCCCCCcCCCCCcHHHHHHHh---ChHHHHHHHHhc-cCCCCcC
Confidence            9999998 999999999999999999999999988   556888988887 5554433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=2.2e-23  Score=181.61  Aligned_cols=127  Identities=19%  Similarity=0.224  Sum_probs=86.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcc-----cccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCC-CCCcH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLEC-----YELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDV-KGNTP   74 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~-----~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~-~G~Tp   74 (326)
                      +||||+|+..|+.++++.|++++++.     .+..|..|+||||+|+.+|+.+++++|++.    |++++.+|. .|+||
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~~g~tp  154 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL----GADVNAQEPCNGRTA  154 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCCH
Confidence            36666666666666666666666431     244566667777777777777777777766    777777766 77777


Q ss_pred             HHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           75 LHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        75 LH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ||+|+..|+.+++ ++|+++|++++.+|.+|+||+++|...   +..+++++|++.|+++.
T Consensus       155 L~~A~~~~~~~~v-~~Ll~~ga~~~~~~~~g~tpl~~A~~~---~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          155 LHLAVDLQNPDLV-SLLLKCGADVNRVTYQGYSPYQLTWGR---PSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHHHHHTTCHHHH-HHHHTTTCCSCCCCTTCCCGGGGCTTS---SCHHHHHHHHTTSCGGG
T ss_pred             HHHHHHcCCHHHH-HHHHHcCCCCCcccCCCCCHHHHHHcc---CchHHHHHHHHcchhhh
Confidence            7777777777776 777777777777777777777777766   44567777777776554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=1e-23  Score=177.04  Aligned_cols=108  Identities=16%  Similarity=0.134  Sum_probs=103.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccC-CCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGD-VKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d-~~G~TpLH~Aa   79 (326)
                      +||||+|++.|+.++++.|++ +.++ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+| .+|+||||+|+
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCSSSSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCCHHHHHH
Confidence            489999999999999999999 8887 77899999999999999999999999999    99999998 89999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~  115 (326)
                      ..|+.+++ ++|+++|++++.+|.+|+||+|+|.+.
T Consensus       119 ~~~~~~~v-~~Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          119 GYVRPEVV-EALVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             HTTCHHHH-HHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             hcCcHHHH-HHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence            99999999 999999999999999999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.90  E-value=3.5e-23  Score=178.29  Aligned_cols=131  Identities=20%  Similarity=0.090  Sum_probs=113.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++...+..|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        59 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~  134 (223)
T 2f8y_A           59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS----HADVNAVDDLGKSALHWAAA  134 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCTTCBCTTSCBHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc----CCCCcCcCCCCCcHHHHHHH
Confidence            58999999999999999999988854477888999999999999999999999988    88999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++...+.
T Consensus       135 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~  189 (223)
T 2f8y_A          135 VNNVDAA-VVLLKNGANKDMQNNREETPLFLAARE---GSYETAKVLLDHFANRDITDH  189 (223)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCHHHH-HHHHHcCCCCCCcCCCCcCHHHHHHHc---CCHHHHHHHHHcCCCCccccc
Confidence            9998888 899999999999999999999999888   556888899998887765443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.90  E-value=7.3e-23  Score=173.45  Aligned_cols=130  Identities=18%  Similarity=0.127  Sum_probs=109.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|++.|+.++++.|+++|+++ +.+|..|+||||+|+..|+.+++++|++.   .+.+++.+|.+|+||||+|+.
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~  115 (201)
T 3hra_A           40 NTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPAAE  115 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHHHH
Confidence            58899999999999999999888887 67788888999999999999999888844   267888888889999999999


Q ss_pred             cCCchHHHHHHhhcc-cCcccccccCcCHHHhHhhCCCc--hHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQ-ANFDAVNKQNVSVTNILLNGYPE--LKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g-~d~~~~n~~g~TpL~~A~~~~~~--~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++| ++++.+|.+|+||||+|+..+..  ...+++++|++.|+++.
T Consensus       116 ~~~~~~v-~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~  172 (201)
T 3hra_A          116 KGHIDNV-KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS  172 (201)
T ss_dssp             TTCHHHH-HHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred             cCCHHHH-HHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence            9988888 8888888 88999999999999999877542  34788899988887765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=5.4e-24  Score=179.78  Aligned_cols=128  Identities=16%  Similarity=0.026  Sum_probs=65.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCCh----hHHHHHHhcCccccccccccCCCCCcHHHH
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYV----EELGNLLENNPLVRSLIIEGDVKGNTPLHV   77 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~----~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~   77 (326)
                      ++||.|++.|+.+.++.+++.+++.  ..|..|+||||+|+.+|+.    +++++|++.    |+++|.+|.+|+||||+
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINK----GADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCCTHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHC----CCCCCCCCCCCCcHHHH
Confidence            4455555555555555555554332  1124455555555555543    255555555    55555555555555555


Q ss_pred             HHhcCCc------hHHHHHHhhcccCcccccccCc-CHHHhHhhCCCc--hHHHHHHHHHH-cCCCCCC
Q 020462           78 LAAVRPD------EFDVRMIRKMQANFDAVNKQNV-SVTNILLNGYPE--LKEEIQKLSKD-VGRGQYS  136 (326)
Q Consensus        78 Aa~~~~~------~~v~~lLl~~g~d~~~~n~~g~-TpL~~A~~~~~~--~~~~i~~~L~~-~g~~~~~  136 (326)
                      |+..++.      +++ ++|+++|+|+|.+|++|. ||||+|+..+..  ...+++++|++ .|+++..
T Consensus        82 a~~~~~~~~~~~~~iv-~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~  149 (186)
T 3t8k_A           82 LFQGGGNDITGTTELC-KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI  149 (186)
T ss_dssp             HHHHCTTCHHHHHHHH-HHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred             HHHcCCcchhhHHHHH-HHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence            5555442      234 555555555555555555 555555553221  23445555555 5555443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.89  E-value=5.7e-23  Score=177.91  Aligned_cols=125  Identities=24%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.    |++++.+|..|+||||+|+..
T Consensus        75 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~  149 (231)
T 3aji_A           75 SPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG----GANPDAKDHYDATAMHRAAAK  149 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHc
Confidence            4555555555555555555555554 34455555555555555555555555555    555555555555666666555


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+.+++ ++|++.|++++.+|.+|.||||+|+..   +..+++++|++.|+++.
T Consensus       150 ~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~  199 (231)
T 3aji_A          150 GNLKMV-HILLFYKASTNIQDTEGNTPLHLACDE---ERVEEAKFLVTQGASIY  199 (231)
T ss_dssp             TCHHHH-HHHHHTTCCSCCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCSC
T ss_pred             CCHHHH-HHHHhcCCCccccCCCCCCHHHHHHHC---CCHHHHHHHHHCCCCCC
Confidence            555555 555556666666666666666666655   33455666666655543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.89  E-value=2.7e-23  Score=184.92  Aligned_cols=131  Identities=20%  Similarity=0.152  Sum_probs=116.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcc----------------------------------------------cccccCCC
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLEC----------------------------------------------YELVDNRG   34 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~----------------------------------------------~~~~d~~G   34 (326)
                      +||||+|+..|+.++++.|++++++.                                              .+..|..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            58888888888888888888877551                                              25568899


Q ss_pred             ccHHHHHHHcCChhHHHHHHhcCccccccccccCCC-CCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHh
Q 020462           35 WNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVK-GNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILL  113 (326)
Q Consensus        35 ~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~-G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~  113 (326)
                      +||||+|+.+|+.+++++|++.    |++++.+|.. |+||||+|+..|+.+++ ++|+++|+|++.+|.+|+||||+|+
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~tpL~~A~~~~~~~~v-~~Ll~~gad~~~~d~~g~tpL~~A~  233 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDA----GADLNKPEPTCGRTPLHLAVEAQAASVL-ELLLKAGADPTARMYGGRTPLGSAL  233 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCcCHHHHHHHcCCHHHH-HHHHHcCCCCcccccCCCCHHHHHH
Confidence            9999999999999999999999    9999999865 99999999999999999 9999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462          114 NGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus       114 ~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      ..   +..+++++|+++|+++...+.
T Consensus       234 ~~---~~~~~v~~Ll~~ga~~~~~~~  256 (282)
T 1oy3_D          234 LR---PNPILARLLRAHGAPEPEDGG  256 (282)
T ss_dssp             TS---SCHHHHHHHHHTTCCCCCCC-
T ss_pred             Hc---CCcHHHHHHHHcCCCcCcCCC
Confidence            99   556999999999998875443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.89  E-value=5.7e-23  Score=178.20  Aligned_cols=129  Identities=22%  Similarity=0.204  Sum_probs=79.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccc----ccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCC-------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECY----ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDV-------   69 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~----~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~-------   69 (326)
                      +||||+|+..|+.++++.|+++++++.    +.+|.+|+||||+|+.+|+.+++++|++.    |++++.+|.       
T Consensus        38 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~~~~~~~  113 (232)
T 2rfa_A           38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR----GASVSARATGSVFHYR  113 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCCSGGGSCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC----CCCCCcccCCcceeec
Confidence            356666666666666666666665542    23345666666666666666666666666    666665544       


Q ss_pred             ------CCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchH-HHHHHHHHHcCCCC
Q 020462           70 ------KGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELK-EEIQKLSKDVGRGQ  134 (326)
Q Consensus        70 ------~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~-~~i~~~L~~~g~~~  134 (326)
                            +|+||||+|+..|+.+++ ++|+++|+|++.+|.+|+||||+|+..++... .+++++|++.|+++
T Consensus       114 ~~~~~~~g~t~L~~A~~~~~~~~v-~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          114 PHNLIYYGEHPLSFAACVGSEEIV-RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             TTCSCCCCSSHHHHHHHHTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence                  566666666666666666 66666666666666666666666666644322 23446666666544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.89  E-value=4.2e-23  Score=182.01  Aligned_cols=124  Identities=22%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccc-cccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRS-LIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~-~in~~d~~G~TpLH~Aa   79 (326)
                      +||||+||+.|+.++++.|+++|+++ +.+|..|+||||+|+..|+.+++++|++.    +. +++.+|.+|+||||+|+
T Consensus        58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~L~~A~  132 (253)
T 1yyh_A           58 ETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRN----RATDLDARMHDGTTPLILAA  132 (253)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHS----TTSCTTCCCTTCCCHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCccccCCCCCcHHHHHH
Confidence            46777777777777777777776666 55566666666666666666666666665    32 44444444444444444


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      ..++.+++ ++|++.|++++.+|.+|.||||+|+..   +..+++++|++.|++
T Consensus       133 ~~~~~~~v-~~Ll~~g~~~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~  182 (253)
T 1yyh_A          133 RLAVEGML-EDLINSHADVNAVDDLGKSALHWAAAV---NNVDAAVVLLKNGAN  182 (253)
T ss_dssp             HHTCSSHH-HHHHHTTCCTTCBCTTSCBHHHHHHHH---TCHHHHHHHHHTTCC
T ss_pred             HcChHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCC
Confidence            44444444 444444444444444444444444444   223444444444433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.89  E-value=7.1e-23  Score=177.58  Aligned_cols=127  Identities=20%  Similarity=0.116  Sum_probs=117.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccc-----cccCCCCCcH
Q 020462            1 MTALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLI-----IEGDVKGNTP   74 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~-~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~i-----n~~d~~G~Tp   74 (326)
                      +||||+|++.|+.++++.|++. +.++ +.+|.+|+||||+|+.+|+.+++++|++.    |+++     +.+|.+|+||
T Consensus         4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            4 ESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEA----APELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             TCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTTCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHc----CchhccccccccCCCCcCH
Confidence            6999999999999999999998 7787 77899999999999999999999999998    7776     7788899999


Q ss_pred             HHHHHhcCCchHHHHHHhhcccCcccccc-------------cCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           75 LHVLAAVRPDEFDVRMIRKMQANFDAVNK-------------QNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        75 LH~Aa~~~~~~~v~~lLl~~g~d~~~~n~-------------~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      ||+|+..|+.+++ ++|+++|++++.++.             +|.||||+|+..   +..+++++|++.|+++..
T Consensus        79 L~~A~~~~~~~~v-~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~  149 (232)
T 2rfa_A           79 LHIAVINQNVNLV-RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV---GSEEIVRLLIEHGADIRA  149 (232)
T ss_dssp             HHHHHHTTCHHHH-HHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH---TCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHcCCHHHH-HHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCC
Confidence            9999999999999 999999999999876             799999999998   556999999999987763

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.89  E-value=8.2e-23  Score=175.97  Aligned_cols=129  Identities=21%  Similarity=0.173  Sum_probs=119.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccc-cccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRS-LIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~-~in~~d~~G~TpLH~Aa   79 (326)
                      +||||+|++.|+.++++.|+++++++ +..|..|+||||+|+..|+.+++++|++.    +. +++.+|.+|+||||+|+
T Consensus        26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           26 ETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRN----RATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHB----TTSCTTCCCTTCCCHHHHHH
T ss_pred             CchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCcHHHHHH
Confidence            58999999999999999999999998 77899999999999999999999999998    65 89999999999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      ..++.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++...+
T Consensus       101 ~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~  155 (223)
T 2f8y_A          101 RLAVEGML-EDLINSHADVNAVDDLGKSALHWAAAV---NNVDAAVVLLKNGANKDMQN  155 (223)
T ss_dssp             HHTCHHHH-HHHHHTTCCTTCBCTTSCBHHHHHHHT---TCHHHHHHHHHTTCCTTCCC
T ss_pred             HhCcHHHH-HHHHHcCCCCcCcCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCcC
Confidence            99999999 999999999999999999999999998   55689999999988876544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.89  E-value=6e-23  Score=178.78  Aligned_cols=133  Identities=20%  Similarity=0.204  Sum_probs=118.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc--ccccccccCCCCCcHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL--VRSLIIEGDVKGNTPLHVL   78 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~--~g~~in~~d~~G~TpLH~A   78 (326)
                      +||||+|+..|+.++++.|+++|+++ +.+|..|+||||+|+..|+.+++++|++....  ....++.+|..|+||||+|
T Consensus        46 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  124 (236)
T 1ikn_D           46 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA  124 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999998110  1233788899999999999


Q ss_pred             HhcCCchHHHHHHhhcccCcccccc-cCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           79 AAVRPDEFDVRMIRKMQANFDAVNK-QNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        79 a~~~~~~~v~~lLl~~g~d~~~~n~-~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      +..|+.+++ ++|+++|++++.+|. +|.||||+|+..   +..+++++|++.|+++...+
T Consensus       125 ~~~~~~~~v-~~Ll~~g~~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~~~  181 (236)
T 1ikn_D          125 SIHGYLGIV-ELLVSLGADVNAQEPCNGRTALHLAVDL---QNPDLVSLLLKCGADVNRVT  181 (236)
T ss_dssp             HHTTCHHHH-HHHHHHTCCTTCCCTTTCCCHHHHHHHT---TCHHHHHHHHTTTCCSCCCC
T ss_pred             HHcCCHHHH-HHHHHcCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCccc
Confidence            999999999 999999999999998 999999999999   55689999999998876443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.89  E-value=8.5e-23  Score=180.04  Aligned_cols=128  Identities=20%  Similarity=0.097  Sum_probs=120.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++...+.+|..|+||||+|+..|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        91 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~A~~  166 (253)
T 1yyh_A           91 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS----HADVNAVDDLGKSALHWAAA  166 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT----TCCTTCBCTTSCBHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHH
Confidence            59999999999999999999999844488899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++..
T Consensus       167 ~~~~~~v-~~Ll~~ga~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          167 VNNVDAA-VVLLKNGANKDMQNNREETPLFLAARE---GSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             HTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTC
T ss_pred             cCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHC---CCHHHHHHHHHcCCCccc
Confidence            9999999 999999999999999999999999998   556899999999987763

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=1.4e-23  Score=183.78  Aligned_cols=125  Identities=18%  Similarity=0.135  Sum_probs=92.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||.|+..|+.++++.|++.++++ +.+|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+..
T Consensus        39 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~d~~g~tpL~~A~~~  113 (239)
T 1ycs_B           39 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAASC  113 (239)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHHc
Confidence            6777777777777777777777776 66677777777777777777777777777    777777777777777777777


Q ss_pred             CCchHHHHHHhhcccCcccccccCc-CHHHhH--hhCCCchHHHHHHHHHHcCCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNV-SVTNIL--LNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~-TpL~~A--~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+.+++ ++|+++|+|++.+|.+|. ||+|+|  ...   +..+++++|++.|+++.
T Consensus       114 ~~~~~v-~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~---g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B          114 NNVQVC-KFLVESGAAVFAMTYSDMQTAADKCEEMEE---GYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCSSSCCCHHHHCCSSST---TCCCHHHHHHHHHHHTT
T ss_pred             CCHHHH-HHHHHcCCCcceecCCCCcchHHHHHHhhh---ccHHHHHHHHHhhhccc
Confidence            777777 777777777777776666 777777  333   33466677776665443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.89  E-value=9.7e-23  Score=181.29  Aligned_cols=68  Identities=18%  Similarity=0.301  Sum_probs=36.7

Q ss_pred             ccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCccccccc-CcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           64 IIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQ-NVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        64 in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~-g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ++.+|.+|+||||+|+..|+.+++ ++|+++|++++.++.. |+||||+|+..   +..+++++|++.|+++.
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~gad~~  219 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMV-RLLRDAGADLNKPEPTCGRTPLHLAVEA---QAASVLELLLKAGADPT  219 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHH-HHHHHHTCCTTCCCTTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHH-HHHHHcCCCCCCCCCCCCcCHHHHHHHc---CCHHHHHHHHHcCCCCc
Confidence            444555555555555555555555 5555555555555533 55555555555   33455555555555444

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.89  E-value=9.4e-23  Score=166.03  Aligned_cols=118  Identities=14%  Similarity=0.200  Sum_probs=111.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+ |..|+.++++.|+++|+++ +.+|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        37 ~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  110 (156)
T 1bd8_A           37 KTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEH----GADVNVPDGTGALPIHLAVQ  110 (156)
T ss_dssp             CCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHH
T ss_pred             CcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHH
Confidence            599999 9999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHH
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKD  129 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~  129 (326)
                      .|+.+++ ++|++. ++++.+|.+|.||+++|+..   +..+++++|++
T Consensus       111 ~~~~~~v-~~Ll~~-~~~~~~~~~g~t~l~~A~~~---~~~~~v~~Ll~  154 (156)
T 1bd8_A          111 EGHTAVV-SFLAAE-SDLHRRDARGLTPLELALQR---GAQDLVDILQG  154 (156)
T ss_dssp             HTCHHHH-HHHHTT-SCTTCCCTTSCCHHHHHHHS---CCHHHHHHHHT
T ss_pred             hChHHHH-HHHHhc-cCCCCcCCCCCCHHHHHHHc---CcHHHHHHHHh
Confidence            9999999 999999 99999999999999999999   45588888765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.88  E-value=1.5e-22  Score=175.34  Aligned_cols=125  Identities=21%  Similarity=0.187  Sum_probs=61.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||.|++.|+.+.++.+++.+++..+..|.+|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+..
T Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHH
T ss_pred             chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh----CCCCCCcCCCCCCHHHHHHHc
Confidence            4455555555555555555554444344445555555555555555555555554    445555555555555555555


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      |+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|.+.|.++
T Consensus        84 ~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~  132 (231)
T 3aji_A           84 GXDEIV-KALLVKGAHVNAVNQNGCTPLHYAASK---NRHEIAVMLLEGGANP  132 (231)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCT
T ss_pred             CHHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCC
Confidence            555444 555555555555555555555555544   2234444444444433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.88  E-value=2.9e-22  Score=180.22  Aligned_cols=129  Identities=22%  Similarity=0.199  Sum_probs=112.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccC------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGD------------   68 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d------------   68 (326)
                      +||||+||..|+.++++.|+++|+++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|            
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~  148 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ----GAHVGAVNSEGDTPLDIAEE  148 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHCCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CCCCCCcCCCCCCHHHHHHh
Confidence            58999999999999999999999998 77799999999999999999999999988    66665544            


Q ss_pred             ------------------------------------------------CCCCcHHHHHHhcCCchHHHHHHhhcccCccc
Q 020462           69 ------------------------------------------------VKGNTPLHVLAAVRPDEFDVRMIRKMQANFDA  100 (326)
Q Consensus        69 ------------------------------------------------~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~  100 (326)
                                                                      ..|.||||+|+..|+.+++ ++|+++|+|++.
T Consensus       149 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v-~~Ll~~g~d~~~  227 (299)
T 1s70_B          149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNI  227 (299)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHH-HHHHTTTCCTTC
T ss_pred             cchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHH-HHHHHcCCCCCC
Confidence                                                            4577888889999999998 999999999999


Q ss_pred             ccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462          101 VNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus       101 ~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      +|.+|.||||+|+..   +..+++++|++.|+++...+
T Consensus       228 ~d~~g~tpL~~A~~~---~~~~~v~~Ll~~gad~~~~d  262 (299)
T 1s70_B          228 KDYDGWTPLHAAAHW---GKEEACRILVENLCDMEAVN  262 (299)
T ss_dssp             CCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCcC
Confidence            999999999999999   55689999999998876443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.88  E-value=1e-22  Score=172.54  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=112.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcccc-ccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR-SLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g-~~in~~d~~G~TpLH~Aa   79 (326)
                      +||||+|+..|+.++++.|++.+....+..|..|+||||+|+.+|+.+++++|++.    | .+++.+|.+|+||||+|+
T Consensus        73 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~  148 (201)
T 3hra_A           73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED----GREDIDFQNDFGYTALIEAV  148 (201)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH----CCCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCcCCCCCCCCCHHHHHH
Confidence            59999999999999999999665543488899999999999999999999999999    7 899999999999999999


Q ss_pred             hcCC-----chHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           80 AVRP-----DEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        80 ~~~~-----~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      ..++     .+++ ++|+++|+|++.+|.+|+||+|+|...   +..+++++|++.|
T Consensus       149 ~~~~~~~~~~~~v-~~Ll~~ga~~~~~~~~g~t~l~~A~~~---~~~~~~~~Ll~~G  201 (201)
T 3hra_A          149 GLREGNQLYQDIV-KLLMENGADQSIKDNSGRTAMDYANQK---GYTEISKILAQYN  201 (201)
T ss_dssp             HSSCCSHHHHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHTCC
T ss_pred             HhccchhhHHHHH-HHHHHCCCCCCccCCCCCCHHHHHHHc---CCHhHHHHHHhcC
Confidence            9988     7788 999999999999999999999999999   5668999988765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.88  E-value=2.3e-22  Score=174.89  Aligned_cols=126  Identities=20%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCC----cccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccC-CCCCcHHH
Q 020462            2 TALHLAADRGYVGIVKAIISKNL----ECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGD-VKGNTPLH   76 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~----d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d-~~G~TpLH   76 (326)
                      ||||+|+..|+.++++.|++.++    ++ +..|..|+||||+|+..|+.+++++|++.    |++++.+| ..|+||||
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~~g~t~L~  155 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLER----GADIDAVDIKSGRSPLI  155 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTTCCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHc----CCCcccccccCCCcHHH
Confidence            45555555555555555555554    33 34455555555555555555555555555    66677666 66777777


Q ss_pred             HHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           77 VLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        77 ~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      +|+..|+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++..
T Consensus       156 ~A~~~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          156 HAVENNSLSMV-QLLLQHGANVNAQMYSGSSALHSASGR---GLLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             HHHHTTCHHHH-HHHHHTTCCTTCBCTTSCBHHHHHHHH---TCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCCCC
Confidence            77777777776 777777777777777777777777776   445677777777766653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.88  E-value=3.1e-22  Score=172.81  Aligned_cols=125  Identities=18%  Similarity=0.157  Sum_probs=63.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcccc--ccccc-cCCCCCcHHHHH
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVR--SLIIE-GDVKGNTPLHVL   78 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g--~~in~-~d~~G~TpLH~A   78 (326)
                      ||||+||+.|+.++++.|++.+++.....|.+|+||||+|+.+|+.+++++|++.    |  .+++. +|..|+||||+|
T Consensus         4 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK----MENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----CTTCCGGGCCCTTSCCHHHHH
T ss_pred             cHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc----cccccccccCCCCCCCHHHHH
Confidence            5555555555555555555555555444555555555555555555555555555    3  33333 444555555555


Q ss_pred             HhcCCchHHHHHHhhcc--cCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           79 AAVRPDEFDVRMIRKMQ--ANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        79 a~~~~~~~v~~lLl~~g--~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      +..|+.+++ ++|+++|  ++++.+|.+|.||||+|+..   +..+++++|++.|.++
T Consensus        80 ~~~~~~~~~-~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~  133 (228)
T 2dzn_A           80 CSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGK---KWFEVSQFLIENGASV  133 (228)
T ss_dssp             HHHCCHHHH-HHHHSSSSCCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCS
T ss_pred             HHcCCHHHH-HHHHhCCCCcccccCCcCCCCHHHHHHHc---CCHhHHHHHHHcCCCc
Confidence            555554444 4554444  44444455555555555444   2334444444444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.88  E-value=1.2e-22  Score=188.19  Aligned_cols=124  Identities=15%  Similarity=0.122  Sum_probs=117.5

Q ss_pred             CcHHHHHHHcC--cHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcccccc-----ccccCCCCCc
Q 020462            1 MTALHLAADRG--YVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSL-----IIEGDVKGNT   73 (326)
Q Consensus         1 ~TpLh~Aa~~G--~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~-----in~~d~~G~T   73 (326)
                      +||||+|+..|  +.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |++     +|.+|.+|+|
T Consensus       139 ~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~~~~~g~t  213 (364)
T 3ljn_A          139 QTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDT----VPSKSSLRLDYANKQGNS  213 (364)
T ss_dssp             CCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CSCSSSCCTTCCCTTCCC
T ss_pred             CCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhc----ccccccccccccCCCCCc
Confidence            59999999999  999999999999998 77899999999999999999999999998    777     9999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           74 PLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        74 pLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      |||+|+..|+.+++ ++|+++|+|++.+|.+|+|||++|+..   +..+++++|+++|+.
T Consensus       214 ~L~~A~~~g~~~~v-~~Ll~~gad~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          214 HLHWAILINWEDVA-MRFVEMGIDVNMEDNEHTVPLYLSVRA---AMVLLTKELLQKTDV  269 (364)
T ss_dssp             TTHHHHTTTCHHHH-HHHHTTTCCTTCCCTTSCCHHHHHHHT---CCHHHHHHHHHHSCH
T ss_pred             HHHHHHHcCCHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHh---ChHHHHHHHHHcCCc
Confidence            99999999999999 999999999999999999999999999   566899999998754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.88  E-value=3.9e-22  Score=173.32  Aligned_cols=126  Identities=23%  Similarity=0.183  Sum_probs=82.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||+|+..|+.++++.|+++++...+..|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+..
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~  154 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK----GSDINIRDNEENICLHWAAFS  154 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHC
Confidence            5666666666666666666665332355566666666666666666666666666    666777777777777777777


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+.+++ ++|++.|++++.+|.+|.||||+|+..   +..+++++|++.|+++.
T Consensus       155 ~~~~~~-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          155 GCVDIA-EILLAAKCDLHAVNIHGDSPLHIAARE---NRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             CCHHHH-HHHHTTTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHTTTCCTT
T ss_pred             CCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHh---CCHhHHHHHHHcCCCCC
Confidence            777766 777777777777777777777777766   44566777777666654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=1e-22  Score=179.03  Aligned_cols=124  Identities=15%  Similarity=0.099  Sum_probs=113.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccC-CCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGD-VKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d-~~G~TpLH~Aa   79 (326)
                      +||||+||+.|+.++++.|++ +.++ +.+|..|+||||+|+.+|+.+++++|++.    |+++|.+| .+|+||||+|+
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHT----TCCTTCCCSSSCCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc----CCCCCcCCCCCCCCHHHHHH
Confidence            489999999999999999999 8887 77899999999999999999999999999    99999998 88999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCC-------------chHHHHHHHHHHcC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYP-------------ELKEEIQKLSKDVG  131 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~-------------~~~~~i~~~L~~~g  131 (326)
                      ..|+.+++ ++|+++|++++.+|.+|.||||+|....+             .+..+++++|.+.+
T Consensus       120 ~~g~~~~v-~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          120 GYVRPEVV-EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HTTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHH-HHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            99999999 99999999999999999999999984321             15678899888753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.88  E-value=8.8e-23  Score=177.57  Aligned_cols=122  Identities=17%  Similarity=0.134  Sum_probs=111.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccccccc-CCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVD-NRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d-~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      +||||+|+..|+.++++.|+++++++ +..| ..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+
T Consensus       117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~  191 (241)
T 1k1a_A          117 LTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQH----GANVNAQMYSGSSALHSAS  191 (241)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCBCTTSCBHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHH
Confidence            58999999999999999999999998 5556 8899999999999999999999999    9999999999999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      ..|+.+++ ++|+++|+|++.+|.+|+||+++|...   +..++++.|.+.+
T Consensus       192 ~~~~~~~v-~~Ll~~ga~~~~~~~~g~tpl~~A~~~---~~~~i~~~l~~~~  239 (241)
T 1k1a_A          192 GRGLLPLV-RTLVRSGADSSLKNCHNDTPLMVARSR---RVIDILRGKATRP  239 (241)
T ss_dssp             HHTCHHHH-HHHHHTTCCTTCCCTTSCCTTTTCSSH---HHHHHHTC-----
T ss_pred             HcCCHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHhc---CcHHHHhhhccCC
Confidence            99999999 999999999999999999999999988   7888888887654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.87  E-value=6.7e-23  Score=180.64  Aligned_cols=129  Identities=16%  Similarity=0.105  Sum_probs=114.3

Q ss_pred             CcHHHHHHHc---CcHHHHHHHHHhCCcccc----------cccCCCccHHHHHHHcCChhHHHHHHhcCcccccccccc
Q 020462            1 MTALHLAADR---GYVGIVKAIISKNLECYE----------LVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEG   67 (326)
Q Consensus         1 ~TpLh~Aa~~---G~~~iv~~Ll~~~~d~~~----------~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~   67 (326)
                      +||||+|+..   |+.++++.|+++++++..          ..|..|+||||+|+.+|+.+++++|++.    |+++|.+
T Consensus        44 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~  119 (256)
T 2etb_A           44 KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN----GADVHLR  119 (256)
T ss_dssp             BCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCC
T ss_pred             CCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcc
Confidence            5999999999   999999999999987632          2347899999999999999999999999    9999999


Q ss_pred             CCC-------------CCcHHHHHHhcCCchHHHHHHhh---cccCcccccccCcCHHHhHhh--CCCch----HHHHHH
Q 020462           68 DVK-------------GNTPLHVLAAVRPDEFDVRMIRK---MQANFDAVNKQNVSVTNILLN--GYPEL----KEEIQK  125 (326)
Q Consensus        68 d~~-------------G~TpLH~Aa~~~~~~~v~~lLl~---~g~d~~~~n~~g~TpL~~A~~--~~~~~----~~~i~~  125 (326)
                      |..             |+||||+|+..|+.+++ ++|++   +|+|++.+|.+|+||||+|+.  .++.+    ..++++
T Consensus       120 ~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v-~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~  198 (256)
T 2etb_A          120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV-TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD  198 (256)
T ss_dssp             CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH-HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCHHHHHHHcCCHHHH-HHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHH
Confidence            987             99999999999999999 99999   999999999999999999998  43221    123899


Q ss_pred             HHHHcCCCC
Q 020462          126 LSKDVGRGQ  134 (326)
Q Consensus       126 ~L~~~g~~~  134 (326)
                      +|++.|+++
T Consensus       199 ~Ll~~ga~~  207 (256)
T 2etb_A          199 GLLQMGARL  207 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHcCCCc
Confidence            999988766

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.87  E-value=2.4e-22  Score=180.63  Aligned_cols=123  Identities=15%  Similarity=-0.071  Sum_probs=115.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +..  +|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~  104 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFS----GLDDSQFDDKGNTALYYAVD  104 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCcHHHHHHH
Confidence            59999999999999999999999998 443  599999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccC-cCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQN-VSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g-~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      .|+.+++ ++|+++|++++.+|.+| .||||+|+..   +..+++++|++.|...
T Consensus       105 ~g~~~~v-~~Ll~~ga~~~~~~~~g~~t~L~~A~~~---~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A          105 SGNMQTV-KLFVKKNWRLMFYGKTGWKTSFYHAVML---NDVSIVSYFLSEIPST  155 (285)
T ss_dssp             TTCHHHH-HHHHHHCGGGGGCSSSGGGSHHHHHHHT---TCHHHHHHHHTTSCTT
T ss_pred             cCCHHHH-HHHHhcCCCCCccCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCcc
Confidence            9999999 99999999999999999 8999999999   5568999999988654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=4e-22  Score=178.82  Aligned_cols=126  Identities=16%  Similarity=0.115  Sum_probs=117.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccc-----ccccCCCccHHHHHHHc---CChhHHHHHHhcCccccccccccCCCCCc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECY-----ELVDNRGWNFLHYAMVS---FYVEELGNLLENNPLVRSLIIEGDVKGNT   73 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~-----~~~d~~G~tpLh~A~~~---g~~~vv~~Ll~~~~~~g~~in~~d~~G~T   73 (326)
                      ++||.|++.|+.+.++.+++.|++++     +..|..|+||||+|+.+   |+.+++++|++.    |+++|.+|.+|+|
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~----ga~in~~d~~g~T  207 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN----SGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH----CSCTTCCCTTCCC
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC----CCCccccCCCCCC
Confidence            47999999999999999999999963     33488999999999999   899999999999    9999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           74 PLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        74 pLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |||+|+..|+.+++ ++|+++|+|++.+|.+|+||||+|...   +..+++++|++.|+++.
T Consensus       208 pLh~A~~~g~~~~v-~~Ll~~gad~~~~d~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          208 ALHYCCLTDNAECL-KLLLRGKASIEIANESGETPLDIAKRL---KHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCHHHH-HHHHHcCCCCCCccCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCC
Confidence            99999999999999 999999999999999999999999999   55689999999888765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=2.3e-22  Score=184.32  Aligned_cols=130  Identities=18%  Similarity=0.135  Sum_probs=116.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCC---hhHHHHHHhcCccccccccccCCCCCcHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFY---VEELGNLLENNPLVRSLIIEGDVKGNTPLHV   77 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~---~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~   77 (326)
                      +||||+||..|+.+++++|+++|+++ +.+|.+|+||||+|+.+|+   .++++.|++.   ..++++.+|.+|+||||+
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~---~~~~~~~~d~~g~tpLh~  207 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDY---LYPCLILEDSMNRTILHH  207 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH---HGGGGGEECTTCCCHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHh---hhccccCCCCCCCCHHHH
Confidence            59999999999999999999999998 7889999999999999998   7888899888   237899999999999999


Q ss_pred             HHh----cCCchHHHHHHhhccc---------------------------------------------CcccccccCcCH
Q 020462           78 LAA----VRPDEFDVRMIRKMQA---------------------------------------------NFDAVNKQNVSV  108 (326)
Q Consensus        78 Aa~----~~~~~~v~~lLl~~g~---------------------------------------------d~~~~n~~g~Tp  108 (326)
                      |+.    .|+.+++ ++|++.+.                                             +++.+|.+|+||
T Consensus       208 A~~~~~~~g~~~~v-~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~Tp  286 (327)
T 1sw6_A          208 IIITSGMTGCSAAA-KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  286 (327)
T ss_dssp             HHHHHTSTTCHHHH-HHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHccccccHHHH-HHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCH
Confidence            999    8899998 88887643                                             588889999999


Q ss_pred             HHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462          109 TNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus       109 L~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      ||+|+..   +..+++++|++.|+++...+
T Consensus       287 Lh~A~~~---g~~~~v~~Ll~~Gad~~~~d  313 (327)
T 1sw6_A          287 LNIAARL---GNISIVDALLDYGADPFIAN  313 (327)
T ss_dssp             HHHHHHH---CCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHc---CCHHHHHHHHHcCCCCcccC
Confidence            9999998   45699999999999886443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.87  E-value=6.3e-22  Score=187.71  Aligned_cols=127  Identities=24%  Similarity=0.239  Sum_probs=112.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|++.|+.++++.|+++++++ +..|..|+||||+|+..|+.+++++|++.    |+++|.+|..|+||||+|+.
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~  320 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKH----GVMVDATTRMGYTPLHVASH  320 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCSSCCCHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CccCCCCCCCCCCHHHHHHH
Confidence            47888888888888888888888887 67788888999999988888899888888    89999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      .|+.+++ ++|+++|+|+|.+|..|+||||+|+..   +..+++++|++.|+++..
T Consensus       321 ~g~~~~v-~~Ll~~gad~n~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          321 YGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQ---GHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             SSCSHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCSCC
T ss_pred             cCcHHHH-HHHHhcCCCCCCCCCCCCCHHHHHHHC---ChHHHHHHHHHCcCCCCC
Confidence            9999998 999999999999999999999999998   556899999999988763

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=2.7e-22  Score=179.53  Aligned_cols=127  Identities=12%  Similarity=0.111  Sum_probs=112.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHH-----HcCChhHHHHHHhcCccccccccccCCCCCcHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAM-----VSFYVEELGNLLENNPLVRSLIIEGDVKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~-----~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpL   75 (326)
                      +||||+||..|+.++++.|++.|++..+..|..|+||||+|+     ..++.++++.|++.    |.+.+.+|.+|+|||
T Consensus       112 ~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~----g~~~~~~~~~g~tpL  187 (276)
T 4hbd_A          112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL----GNINAKASQAGQTAL  187 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH----SCTTCCCTTTCCCHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc----CCCccccCCCCCCHH
Confidence            599999999999999999999999334788999999999999     56788899999998    888888899999999


Q ss_pred             HHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHH-cCCCCC
Q 020462           76 HVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKD-VGRGQY  135 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~-~g~~~~  135 (326)
                      |+|+..|+.+++ ++|+++|+|+|.+|.+|+||||+|+..   +..+++++|++ .|+++.
T Consensus       188 h~A~~~g~~~~v-~~Ll~~gad~n~~d~~G~TpLh~A~~~---g~~~iv~~Ll~~~gad~~  244 (276)
T 4hbd_A          188 MLAVSHGRVDVV-KALLACEADVNVQDDDGSTALMCACEH---GHKEIAGLLLAVPSCDIS  244 (276)
T ss_dssp             HHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHTSTTCCTT
T ss_pred             HHHHHcCCHHHH-HHHHhCCCCCCCCCCCCCCHHHHHHHC---CCHHHHHHHHhcCCCCCc
Confidence            999999999998 999999999999999999999999988   55688999988 777665

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.87  E-value=1.1e-21  Score=170.37  Aligned_cols=126  Identities=17%  Similarity=0.144  Sum_probs=117.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|+++|+++ +..|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~   86 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKA----GALVDPKDAEGSTCLHLAAK   86 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT----TCCCCCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhC----CCCCCCCCCCCCcHHHHHHH
Confidence            58999999999999999999999998 77799999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcc-cCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQ-ANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g-~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|++.| .+++..|..|.|||++|+..   +..+++++|++.|.++.
T Consensus        87 ~~~~~~~-~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~  138 (237)
T 3b7b_A           87 KGHYEVV-QYLLSNGQMDVNCQDDGGWTPMIWATEY---KHVDLVKLLLSKGSDIN  138 (237)
T ss_dssp             TTCHHHH-HHHHTTTCCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHH-HHHHhCCCCCcccCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCC
Confidence            9999998 9999988 89999999999999999998   55689999999887765

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=5.8e-22  Score=147.60  Aligned_cols=91  Identities=30%  Similarity=0.331  Sum_probs=81.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|++.|+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            3 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHH
Confidence            58999999999999999999999887 77788999999999999999999999988    89999999999999999999


Q ss_pred             cCCchHHHHHHhhcccC
Q 020462           81 VRPDEFDVRMIRKMQAN   97 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d   97 (326)
                      .|+.+++ ++|+++|++
T Consensus        78 ~~~~~~~-~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVV-KLLLEAGAY   93 (93)
T ss_dssp             TTCHHHH-HHHHHTTCC
T ss_pred             cCCHHHH-HHHHHcCCC
Confidence            9998888 899888865

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.87  E-value=1.2e-21  Score=174.03  Aligned_cols=127  Identities=19%  Similarity=0.187  Sum_probs=119.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCccHHHHHHHcCC----hhHHHHHHhcCccccccccccCCCCCcHH
Q 020462            1 MTALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFY----VEELGNLLENNPLVRSLIIEGDVKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~-~~d~~~~~d~~G~tpLh~A~~~g~----~~vv~~Ll~~~~~~g~~in~~d~~G~TpL   75 (326)
                      +||||+|+..|+.++++.|+++ +.++ +..|..|+||||+|+..++    .+++++|++.    |+++|.+|.+|+|||
T Consensus       149 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~----g~~~~~~~~~g~t~L  223 (285)
T 1wdy_A          149 ATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKTPL  223 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT----TCCSSCCCTTSCCHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHc----CCCCCCcCCCCCcHH
Confidence            4899999999999999999998 7777 7789999999999999999    8999999999    999999999999999


Q ss_pred             HHHHhcCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           76 HVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      |+|+..|+.+.+ ++|++ .|++++.+|.+|+||||+|...   +..+++++|+++|+++..
T Consensus       224 ~~A~~~~~~~~v-~~Ll~~~g~~~~~~~~~g~t~l~~A~~~---~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          224 ILAVEKKHLGLV-QRLLEQEHIEINDTDSDGKTALLLAVEL---KLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHHTTCHHHH-HHHHHSSSCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHSSCSCC
T ss_pred             HHHHHcCCHHHH-HHHHhccCCCccccCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCc
Confidence            999999999999 99998 8999999999999999999999   566999999999998874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.87  E-value=1.3e-22  Score=180.53  Aligned_cols=130  Identities=15%  Similarity=0.080  Sum_probs=115.2

Q ss_pred             CcHHHHHHHc---CcHHHHHHHHHhCCccc----------ccccCCCccHHHHHHHcCChhHHHHHHhcCcccccccccc
Q 020462            1 MTALHLAADR---GYVGIVKAIISKNLECY----------ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEG   67 (326)
Q Consensus         1 ~TpLh~Aa~~---G~~~iv~~Ll~~~~d~~----------~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~   67 (326)
                      +||||+||..   |+.++++.|++++++..          ...|..|+||||+|+.+|+.+++++|++.    |+++|.+
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~----ga~~~~~  130 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN----GADVQAA  130 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCC
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC----CCCcCcc
Confidence            5999999987   99999999999987531          12567899999999999999999999999    9999999


Q ss_pred             CC--------------CCCcHHHHHHhcCCchHHHHHHhh---cccCcccccccCcCHHHhHhhCCCch------HHHHH
Q 020462           68 DV--------------KGNTPLHVLAAVRPDEFDVRMIRK---MQANFDAVNKQNVSVTNILLNGYPEL------KEEIQ  124 (326)
Q Consensus        68 d~--------------~G~TpLH~Aa~~~~~~~v~~lLl~---~g~d~~~~n~~g~TpL~~A~~~~~~~------~~~i~  124 (326)
                      |.              +|+||||+|+..|+.+++ ++|++   .|++++.+|.+|+||||+|+..++..      ..+++
T Consensus       131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v-~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v  209 (273)
T 2pnn_A          131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV-KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY  209 (273)
T ss_dssp             BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH-HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHH-HHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH
Confidence            97              799999999999999999 99999   99999999999999999999876531      15788


Q ss_pred             HHHHHcCCCCC
Q 020462          125 KLSKDVGRGQY  135 (326)
Q Consensus       125 ~~L~~~g~~~~  135 (326)
                      ++|++.|+++.
T Consensus       210 ~~Ll~~ga~~n  220 (273)
T 2pnn_A          210 NEILILGAKLH  220 (273)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHhhhhcc
Confidence            99999887654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=176.41  Aligned_cols=125  Identities=14%  Similarity=0.042  Sum_probs=108.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKH----GAQVNGVTADWHTPLFNACV  134 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHT----TCCSSCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            58999999999999999999999887 77899999999999999999999999998    89999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|++.|++++..+ +|.|||++|+..   +..+++++|++.|.++.
T Consensus       135 ~~~~~~v-~~Ll~~g~~~~~~~-~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~  184 (285)
T 3d9h_A          135 SGSWDCV-NLLLQHGASVQPES-DLASPIHEAARR---GHVECVNSLIAYGGNID  184 (285)
T ss_dssp             HTCHHHH-HHHHHTTCCSSCSC-TTSCHHHHHHHH---TCHHHHHHHHHTTCCTT
T ss_pred             cCHHHHH-HHHHHCCCCCCCCC-CCCCHHHHHHHc---CCHHHHHHHHHCCCCCC
Confidence            9998888 88888888887644 488888888888   45578888888877654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.87  E-value=2.6e-22  Score=175.67  Aligned_cols=128  Identities=9%  Similarity=0.056  Sum_probs=91.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||.|++.|+.+.++.|+++|.++ +. +..|.||||.|+.+|+.++++.|++.    |+++|.+|.+|+||||+|+.
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ---------------------------------CHHHHHHHHHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHHHHH
T ss_pred             cccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHH
Confidence            59999999999999999999999998 43 57899999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      .|+.+++ ++|+++|+|++.+|.+|+||||+|+..   +..+++++|+++|+++...+
T Consensus        80 ~g~~~~v-~~Ll~~ga~~~~~d~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~~~  133 (239)
T 1ycs_B           80 AGHTEIV-KFLVQFGVNVNAADSDGWTPLHCAASC---NNVQVCKFLVESGAAVFAMT  133 (239)
T ss_dssp             HTCHHHH-HHHHHHTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCHHHH-HHHHHcCCCCCccCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCcceec
Confidence            9999999 999999999999999999999999999   55699999999998876443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.86  E-value=4.6e-22  Score=178.01  Aligned_cols=122  Identities=14%  Similarity=0.110  Sum_probs=114.5

Q ss_pred             CcHHHHHH-----HcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHH
Q 020462            1 MTALHLAA-----DRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa-----~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpL   75 (326)
                      +||||+|+     ..|+.++++.|++.+.+. +..|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+|||
T Consensus       146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~----gad~n~~d~~G~TpL  220 (276)
T 4hbd_A          146 YSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLAC----EADVNVQDDDGSTAL  220 (276)
T ss_dssp             CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHH
Confidence            59999999     779999999999999876 77799999999999999999999999999    999999999999999


Q ss_pred             HHHHhcCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           76 HVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      |+|+..|+.+++ ++|++ .|+|++.+|.+|+|||++|+..   +..+++++|++++
T Consensus       221 h~A~~~g~~~iv-~~Ll~~~gad~~~~d~~g~TpL~~A~~~---g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          221 MCACEHGHKEIA-GLLLAVPSCDISLTDRDGSTALMVALDA---GQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHTCHHHH-HHHHTSTTCCTTCCCTTSCCHHHHHHHH---TCHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHH-HHHHhcCCCCCcCcCCCCCCHHHHHHHc---CCHHHHHHHHhcc
Confidence            999999999999 99999 8999999999999999999999   5668999988754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=1.3e-21  Score=173.68  Aligned_cols=127  Identities=15%  Similarity=0.087  Sum_probs=119.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||.|++.|+.++++.|+++++++....|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH----GADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHH
Confidence            48999999999999999999999998555588999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++|++++.+|.+|.|||++|+..   +..+++++|.+.|.++.
T Consensus        82 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~  132 (285)
T 1wdy_A           82 AGSVKLL-KLFLSKGADVNECDFYGFTAFMEAAVY---GKVKALKFLYKRGANVN  132 (285)
T ss_dssp             HTCHHHH-HHHHHTTCCTTCBCTTCCBHHHHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHH-HHHHHcCCCCCccCcccCCHHHHHHHh---CCHHHHHHHHHhCCCcc
Confidence            9999999 999999999999999999999999999   55689999999988766

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.86  E-value=3.8e-21  Score=176.00  Aligned_cols=95  Identities=28%  Similarity=0.221  Sum_probs=57.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||+||..|+.++++.|+++|+++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+..
T Consensus        60 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~----g~~~~~~~~~g~t~L~~A~~~  134 (351)
T 3utm_A           60 TPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKH----GACVNAMDLWQFTPLHEAASK  134 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHc
Confidence            5666666666666666666666655 44555666666666666666666666665    566666666666666666666


Q ss_pred             CCchHHHHHHhhcccCccccc
Q 020462           82 RPDEFDVRMIRKMQANFDAVN  102 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n  102 (326)
                      |+.+++ ++|+++|++++..|
T Consensus       135 ~~~~~v-~~Ll~~g~~~~~~~  154 (351)
T 3utm_A          135 NRVEVC-SLLLSHGADPTLVN  154 (351)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCC
T ss_pred             CCHHHH-HHHHHcCCCCcccc
Confidence            666655 66666655555433

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.86  E-value=4.5e-22  Score=175.64  Aligned_cols=130  Identities=16%  Similarity=0.124  Sum_probs=114.7

Q ss_pred             CcHHHHHH---HcCcHHHHHHHHHhCCcc----------cccccCCCccHHHHHHHcCChhHHHHHHhcCcccccccccc
Q 020462            1 MTALHLAA---DRGYVGIVKAIISKNLEC----------YELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEG   67 (326)
Q Consensus         1 ~TpLh~Aa---~~G~~~iv~~Ll~~~~d~----------~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~   67 (326)
                      +||||+|+   +.|+.++++.|++.+++.          ....|..|+||||+|+.+|+.+++++|++.    |+++|.+
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~  122 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK----GADVHAQ  122 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT----TCCTTCC
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC----CCCcCcc
Confidence            59999999   789999999999988652          134456899999999999999999999999    9999999


Q ss_pred             C--------------CCCCcHHHHHHhcCCchHHHHHHhh---cccCcccccccCcCHHHhHhhCCCch------HHHHH
Q 020462           68 D--------------VKGNTPLHVLAAVRPDEFDVRMIRK---MQANFDAVNKQNVSVTNILLNGYPEL------KEEIQ  124 (326)
Q Consensus        68 d--------------~~G~TpLH~Aa~~~~~~~v~~lLl~---~g~d~~~~n~~g~TpL~~A~~~~~~~------~~~i~  124 (326)
                      |              .+|+||||+|+..|+.+++ ++|++   +|++++.+|.+|+||||+|+..++..      ..+++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v-~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v  201 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV-HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY  201 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH-HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHH-HHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence            9              6899999999999999999 99999   99999999999999999999765431      25889


Q ss_pred             HHHHHcCCCCC
Q 020462          125 KLSKDVGRGQY  135 (326)
Q Consensus       125 ~~L~~~g~~~~  135 (326)
                      ++|++.|+++.
T Consensus       202 ~~Ll~~ga~~~  212 (260)
T 3jxi_A          202 DLLLIKCAKLF  212 (260)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHhCcccc
Confidence            99999887653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=1.6e-21  Score=185.01  Aligned_cols=126  Identities=20%  Similarity=0.165  Sum_probs=112.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|+++++++ +..|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHH
Confidence            58999999999999999999999988 67789999999999999999999999998    89999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++|++++..|..|.|||++|+..   +..+++++|++.+....
T Consensus        90 ~g~~~~v-~~Ll~~ga~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~  140 (437)
T 1n11_A           90 IGHTNMV-KLLLENNANPNLATTAGHTPLHIAARE---GHVETVLALLEKEASQA  140 (437)
T ss_dssp             HTCHHHH-HHHHHHTCCTTCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCSC
T ss_pred             CCCHHHH-HHHHhCCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCc
Confidence            9999998 999999999999999999999999988   44577777777765543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.86  E-value=1.5e-21  Score=164.75  Aligned_cols=120  Identities=12%  Similarity=-0.027  Sum_probs=106.7

Q ss_pred             CcHHHHHHHcCcH----HHHHHHHHhCCcccccccCCCccHHHHHHHcCC------hhHHHHHHhcCccccccccccCCC
Q 020462            1 MTALHLAADRGYV----GIVKAIISKNLECYELVDNRGWNFLHYAMVSFY------VEELGNLLENNPLVRSLIIEGDVK   70 (326)
Q Consensus         1 ~TpLh~Aa~~G~~----~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~------~~vv~~Ll~~~~~~g~~in~~d~~   70 (326)
                      +||||+|+..|+.    +++++|+++|+|+ +.+|.+|+||||+|+..++      .+++++|++.    |+++|.+|.+
T Consensus        39 ~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~----Gadin~~d~~  113 (186)
T 3t8k_A           39 SNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK----GADITALYKP  113 (186)
T ss_dssp             TTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT----TCCSSSCBGG
T ss_pred             CCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC----CCCCCccCCC
Confidence            6999999999975    5999999999998 7889999999999999987      5789999999    9999999999


Q ss_pred             CC-cHHHHHHhcCCc-----hHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHH
Q 020462           71 GN-TPLHVLAAVRPD-----EFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKD  129 (326)
Q Consensus        71 G~-TpLH~Aa~~~~~-----~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~  129 (326)
                      |+ ||||+|+..+..     +++ ++|++ +|+|++.+|.+|+||||+|.+.++   .+++++|.+
T Consensus       114 g~ttpLh~A~~~~~~~~~~~~iv-~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~---~~~v~~L~~  175 (186)
T 3t8k_A          114 YKIVVFKNIFNYFVDENEMIPLY-KLIFSQSGLQLLIKDKWGLTALEFVKRCQK---PIALKMMED  175 (186)
T ss_dssp             GTBCTTGGGGGCCSCHHHHHHHH-HHHHTSTTCCTTCCCTTSCCHHHHHHTTTC---HHHHHHHHH
T ss_pred             cCchHHHHHHHcCCChhhHHHHH-HHHHHhcCCCCcccCCCCCCHHHHHHHcCC---HHHHHHHHH
Confidence            99 999999996543     356 89999 999999999999999999999954   466666655

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.86  E-value=2.4e-21  Score=174.01  Aligned_cols=125  Identities=17%  Similarity=0.074  Sum_probs=115.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|.+|+||||+|+..|+.+++++|++.    |++++..+ +|+||||+|+.
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~-~g~t~L~~A~~  166 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQH----GASVQPES-DLASPIHEAAR  166 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCSSCSC-TTSCHHHHHHH
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHC----CCCCCCCC-CCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    88888644 59999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|++.|++++.+|.+|.|||++|+..   +..+++++|++.|+++.
T Consensus       167 ~g~~~~v-~~Ll~~g~~~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          167 RGHVECV-NSLIAYGGNIDHKISHLGTPLYLACEN---QQRACVKKLLESGADVN  217 (285)
T ss_dssp             HTCHHHH-HHHHHTTCCTTCCBTTTBCHHHHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHc---CcHHHHHHHHHCCCCCC
Confidence            9999999 999999999999999999999999999   55689999999887665

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=6.8e-22  Score=152.89  Aligned_cols=103  Identities=24%  Similarity=0.212  Sum_probs=95.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+||..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        10 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A           10 NTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK----GADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT----TCCTTCCCTTCCCTTHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc----CCCCcccCCCCCCHHHHHHH
Confidence            58999999999999999999999997 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHH
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVT  109 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL  109 (326)
                      .++.+++ ++|+++|+|+|.++..|.||-
T Consensus        85 ~~~~~~~-~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIV-KLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHH-HHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHH-HHHHHcCCCCCcCCccccccc
Confidence            9999998 999999999999999999884

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=1e-21  Score=178.21  Aligned_cols=124  Identities=17%  Similarity=0.120  Sum_probs=115.0

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccccc-----ccCCCccHHHHHHHc---CChhHHHHHHhcCccccccccccCCCCCc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYEL-----VDNRGWNFLHYAMVS---FYVEELGNLLENNPLVRSLIIEGDVKGNT   73 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~-----~d~~G~tpLh~A~~~---g~~~vv~~Ll~~~~~~g~~in~~d~~G~T   73 (326)
                      ++||.|+..|+.+.++.|++.+++++..     .|..|+||||+|+..   |+.+++++|++.    |+++|.+|.+|+|
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~----gadvn~~d~~G~T  228 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN----GGHLDAKAADGNT  228 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH----SSCTTCCCTTCCC
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc----CCCCCCCCCCCCC
Confidence            4699999999999999999999998442     689999999999997   899999999999    9999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           74 PLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        74 pLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      |||+|+..|+.+++ ++|+++|+|++.+|.+|+|||++|...   +..+++++|++.|++
T Consensus       229 pLh~A~~~g~~~~v-~~Ll~~gad~~~~d~~G~TpL~~A~~~---~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          229 ALHYAALYNQPDCL-KLLLKGRALVGTVNEAGETALDIARKK---HHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHHHTTCHHHH-HHHHHTTCCCSCCCTTSCCHHHHHHHH---TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHhcCC
Confidence            99999999999999 999999999999999999999999998   556889999987754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.85  E-value=8.4e-22  Score=177.07  Aligned_cols=125  Identities=16%  Similarity=0.074  Sum_probs=103.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCC-CcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKG-NTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G-~TpLH~Aa   79 (326)
                      +||||+|+..|+.++++.|+++|+++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+| .||||+|+
T Consensus        63 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~  137 (285)
T 3kea_A           63 EFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAV  137 (285)
T ss_dssp             CCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHH
Confidence            58999999999999999999999887 66788899999999999999999999988    88899888888 78888888


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ..|+.+++ ++|+++|++.... .+|.||||+|+..   +..+++++|++.|+++.
T Consensus       138 ~~~~~~~v-~~Ll~~g~~~~~~-~~g~t~L~~A~~~---g~~~~v~~Ll~~gad~n  188 (285)
T 3kea_A          138 MLNDVSIV-SYFLSEIPSTFDL-AILLSCIHITIKN---GHVDMMILLLDYMTSTN  188 (285)
T ss_dssp             HTTCHHHH-HHHHTTSCTTCCC-STHHHHHHHHHHT---TCHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHH-HHHHhCCCccccc-cCCccHHHHHHHc---ChHHHHHHHHHcCCCCC
Confidence            88888888 8888888766322 2788888888887   45578888888776655

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=1.8e-21  Score=181.12  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=114.5

Q ss_pred             cHHHHHHHc-CcHHHHHHHHHhCCccccccc--CCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHH
Q 020462            2 TALHLAADR-GYVGIVKAIISKNLECYELVD--NRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVL   78 (326)
Q Consensus         2 TpLh~Aa~~-G~~~iv~~Ll~~~~d~~~~~d--~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~A   78 (326)
                      ||||.|+.. |+.++++.|+++|+++ +..|  ..|+||||+|+..|+.+++++|++.    |+++|.+|.+|+||||+|
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~----Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQN----GANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHH
Confidence            699999999 9999999999999998 5667  8999999999999999999999999    999999999999999999


Q ss_pred             HhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           79 AAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        79 a~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      +..|+.+++ ++|+++|+|++.+|.+|.||||+|...   +..+++++|++.+.
T Consensus       276 ~~~g~~~~v-~~LL~~Gad~~~~d~~G~TpL~~A~~~---g~~~iv~lLl~~~~  325 (368)
T 3jue_A          276 TILGHTGLA-CLFLKRGADLGARDSEGRDPLTIAMET---ANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHHC
T ss_pred             HHcCcHHHH-HHHHHCcCCCCCcCCCCCCHHHHHHHC---CCHHHHHHHHHcCC
Confidence            999999999 999999999999999999999999999   55688888887664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.85  E-value=2.5e-21  Score=174.03  Aligned_cols=120  Identities=21%  Similarity=0.211  Sum_probs=113.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||.||..|+.++++.|+++|+++ +..|.+|+||||+|+..|+.+++++|++.    |+++|.+|.+|+||||+|+..
T Consensus        42 t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           42 AVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVEN----GANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHHHHHHc
Confidence            7999999999999999999999998 77899999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                      |+.+++ ++|+++|++++.+|.+|.|||++|...   ...++++.+...
T Consensus       117 g~~~~v-~~Ll~~g~~~~~~~~~g~t~l~~A~~~---~~~~~~~~ll~~  161 (299)
T 1s70_B          117 GYLDIA-EYLISQGAHVGAVNSEGDTPLDIAEEE---AMEELLQNEVNR  161 (299)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCTTSCCHHHHCCSH---HHHHHHHHHHHH
T ss_pred             CCHHHH-HHHHhCCCCCCCcCCCCCCHHHHHHhc---chHHHHHHHHhh
Confidence            999999 999999999999999999999999887   777888776653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.85  E-value=2.3e-21  Score=179.64  Aligned_cols=126  Identities=20%  Similarity=0.143  Sum_probs=109.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHHh----CCccccc-----------------ccCCCccHHHHHHHcC--ChhHHHHHHhcCc
Q 020462            2 TALHLAADRGYVGIVKAIISK----NLECYEL-----------------VDNRGWNFLHYAMVSF--YVEELGNLLENNP   58 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~----~~d~~~~-----------------~d~~G~tpLh~A~~~g--~~~vv~~Ll~~~~   58 (326)
                      ||||+|+..|+.++++.|+++    +.++ +.                 .|..|+||||+|+..|  +.+++++|++.  
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--  162 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--  162 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--
Confidence            566666666666666666666    4444 22                 7889999999999999  99999999999  


Q ss_pred             cccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccC-----cccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           59 LVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQAN-----FDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        59 ~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d-----~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                        |+++|.+|.+|+||||+|+..|+.+++ ++|+++|++     ++.+|.+|.||||+|+..   +..+++++|++.|++
T Consensus       163 --ga~~~~~d~~g~t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~gad  236 (364)
T 3ljn_A          163 --GASPTAKDKADETPLMRAMEFRNREAL-DLMMDTVPSKSSLRLDYANKQGNSHLHWAILI---NWEDVAMRFVEMGID  236 (364)
T ss_dssp             --TCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT---TCHHHHHHHHTTTCC
T ss_pred             --CCCCcccCCCCCCHHHHHHHcCCHHHH-HHHHhcccccccccccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC
Confidence              999999999999999999999999999 999999998     999999999999999999   556999999999988


Q ss_pred             CCC
Q 020462          134 QYS  136 (326)
Q Consensus       134 ~~~  136 (326)
                      +..
T Consensus       237 ~~~  239 (364)
T 3ljn_A          237 VNM  239 (364)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.85  E-value=4.7e-21  Score=175.36  Aligned_cols=130  Identities=19%  Similarity=0.085  Sum_probs=119.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||.||+.|+.+.++.++...+...+.+|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+.
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~  100 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH----GADVHAKDKGGLVPLHNACS  100 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCcHHHHHHH
Confidence            37999999999999999999874433478899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||||+|+..   +..+++++|++.|+++...+
T Consensus       101 ~g~~~iv-~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~  154 (351)
T 3utm_A          101 YGHYEVT-ELLLKHGACVNAMDLWQFTPLHEAASK---NRVEVCSLLLSHGADPTLVN  154 (351)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCcccc
Confidence            9999999 999999999999999999999999999   55689999999998876433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.85  E-value=3.3e-21  Score=179.74  Aligned_cols=125  Identities=20%  Similarity=0.174  Sum_probs=114.2

Q ss_pred             CcHHHHHHHcC---cHHHHHHHHHhCCcccc-------cccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCC
Q 020462            1 MTALHLAADRG---YVGIVKAIISKNLECYE-------LVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVK   70 (326)
Q Consensus         1 ~TpLh~Aa~~G---~~~iv~~Ll~~~~d~~~-------~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~   70 (326)
                      +||||+|+..|   +.++++.|+++++++..       ..|..|+||||+|+.+|+.+++++|++.   .++++|.+|.+
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~---~~~~~n~~d~~  312 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE---KGSNKDKQDED  312 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH---SCCCTTCCCTT
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh---cCCCccCcCCC
Confidence            58999999998   89999999999998732       2577999999999999999999999987   24999999999


Q ss_pred             CCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           71 GNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        71 G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      |+||||+|+..|+.+++ ++|+++|++++.+|.+|+|||++|...   +..+++++|.+.++
T Consensus       313 g~TpL~~A~~~g~~~iv-~~Ll~~gad~~~~d~~g~t~l~~A~~~---g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          313 GKTPIMLAAQEGRIEVV-MYLIQQGASVEAVDATDHTARQLAQAN---NHHNIVDIFDRCRP  370 (373)
T ss_dssp             CCCHHHHHHHHTCHHHH-HHHHHTTCCSSCCCSSSCCHHHHHHHT---TCHHHHHHHHTTC-
T ss_pred             CCCHHHHHHHcCCHHHH-HHHHHcCCCccCCCCCCCCHHHHHHHc---CCHHHHHHHHhcCc
Confidence            99999999999999999 999999999999999999999999999   55699999998765

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.84  E-value=8.3e-21  Score=164.42  Aligned_cols=130  Identities=17%  Similarity=0.182  Sum_probs=114.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~----~~~~~~~~~~g~t~l~~a~~  151 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAK----GQDVDMMDQNGMTPLMWAAY  151 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhc----CCCccccCCCCCcHHHHHHH
Confidence            48999999999999999999999998 77799999999999999999999999998    89999999999999999997


Q ss_pred             cCC-chHHHHHHhhcccCcccccc-cCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           81 VRP-DEFDVRMIRKMQANFDAVNK-QNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        81 ~~~-~~~v~~lLl~~g~d~~~~n~-~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      .++ .+.+ ++|++.|++++..+. +|.||||+|+..   +..+++++|++.|+++...+.
T Consensus       152 ~~~~~~~~-~~L~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~  208 (240)
T 3eu9_A          152 RTHSVDPT-RLLLTFNVSVNLGDKYHKNTALHWAVLA---GNTTVISLLLEAGANVDAQNI  208 (240)
T ss_dssp             HCCSSTTH-HHHHHTTCCTTCCCTTTCCCHHHHHHHH---TCHHHHHHHHHHTCCTTCBCT
T ss_pred             hCChHHHH-HHHHhcCCCcchhhccCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCcCC
Confidence            766 5666 899999999999887 899999999988   556889999998888765443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.84  E-value=9.7e-21  Score=173.57  Aligned_cols=126  Identities=19%  Similarity=0.188  Sum_probs=113.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCccHHHHHHHcCC----hhHHHHHHhcCccccccccccCCCCCcHH
Q 020462            1 MTALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFY----VEELGNLLENNPLVRSLIIEGDVKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~-~~d~~~~~d~~G~tpLh~A~~~g~----~~vv~~Ll~~~~~~g~~in~~d~~G~TpL   75 (326)
                      +||||+|++.|+.++++.|+++ |.++ +.+|..|+|++|.++..++    .+++++|++.    |+++|.+|.+|+|||
T Consensus       169 ~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~----gad~n~~d~~g~t~L  243 (337)
T 4g8k_A          169 ATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKTPL  243 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT----TCCTTCCCGGGCCHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC----CCCCCCcCCCCCCHH
Confidence            4899999999999999999965 7887 7889999999999877654    3578899998    999999999999999


Q ss_pred             HHHHhcCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           76 HVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+|+..|+.+.+ ++|++ .|++++.+|.+|+||||+|++.   +..+++++|+++|+++.
T Consensus       244 ~~a~~~~~~~~v-~~Ll~~~~~~vn~~d~~G~TpL~~A~~~---g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          244 ILAVEKKHLGLV-QRLLEQEHIEINDTDSDGKTALLLAVEL---KLKKIAELLCKRGASTD  300 (337)
T ss_dssp             HHHHHTTCHHHH-HHHHTSTTCCTTCBCTTSCBHHHHHHHT---TCHHHHHHHHTTSCSST
T ss_pred             HHHHHhhhhHHH-HHHHHhcCCcccCcCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCC
Confidence            999999999999 87776 5899999999999999999999   55689999999998775

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=6.7e-21  Score=141.78  Aligned_cols=92  Identities=25%  Similarity=0.246  Sum_probs=86.5

Q ss_pred             CCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhH
Q 020462           33 RGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNIL  112 (326)
Q Consensus        33 ~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A  112 (326)
                      +|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+..|+.+++ ++|+++|++++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~n~~d~~g~t~L~~A~~~~~~~~v-~~Ll~~ga~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHH-HHHHHcCCCCCccCCCCCCHHHHH
Confidence            589999999999999999999999    999999999999999999999999999 999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHcCC
Q 020462          113 LNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus       113 ~~~~~~~~~~i~~~L~~~g~  132 (326)
                      +..   +..+++++|++.|+
T Consensus        76 ~~~---~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           76 ARN---GHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHT---TCHHHHHHHHHTTC
T ss_pred             HHc---CCHHHHHHHHHcCC
Confidence            999   56689999999886

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.84  E-value=1.9e-20  Score=162.14  Aligned_cols=131  Identities=16%  Similarity=0.064  Sum_probs=118.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|++.|+.++++.|++++++.....+..|+||||+|+..|+.+++++|++.    |++++.+|..|.||||+|+.
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY----GADPSLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHH
Confidence            58999999999999999999999998777777799999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                      .|+.+++ ++|+++|++++.+|.+|.||+++|+..++  ..+++++|.+.|.++...+
T Consensus       119 ~~~~~~~-~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~~L~~~~~~~~~~~  173 (240)
T 3eu9_A          119 FGHTSIV-AYLIAKGQDVDMMDQNGMTPLMWAAYRTH--SVDPTRLLLTFNVSVNLGD  173 (240)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHHCC--SSTTHHHHHHTTCCTTCCC
T ss_pred             cCHHHHH-HHHHhcCCCccccCCCCCcHHHHHHHhCC--hHHHHHHHHhcCCCcchhh
Confidence            9999998 99999999999999999999999996543  2467888888887766443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.83  E-value=5.7e-21  Score=178.11  Aligned_cols=130  Identities=14%  Similarity=0.075  Sum_probs=120.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHH--------HhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCC
Q 020462            1 MTALHLAADRGYVGIVKAII--------SKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGN   72 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll--------~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~   72 (326)
                      +||||+||..|+.++++.|+        +.|.++ +.+|.+|+||||+|+.+|+.+++++|++.    |++++.+|.+|+
T Consensus       126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----ga~~~~~~~~g~  200 (373)
T 2fo1_E          126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKA----GADPTIYNKSER  200 (373)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHC----CCCCcccCCCCC
Confidence            59999999999998877776        789998 77899999999999999999999999999    999999999999


Q ss_pred             cHHHHHHhcCCchHHHHHHhhcc---cCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCC
Q 020462           73 TPLHVLAAVRPDEFDVRMIRKMQ---ANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus        73 TpLH~Aa~~~~~~~v~~lLl~~g---~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~  136 (326)
                      ||||+|+..|+.+++ ++|++++   ++++..|.+|.|||++|+..+.....+++++|++.|+++..
T Consensus       201 t~L~~A~~~g~~~~v-~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~  266 (373)
T 2fo1_E          201 SALHQAAANRDFGMM-VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  266 (373)
T ss_dssp             CHHHHHHHTTCHHHH-HHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             CHHHHHHHCCCHHHH-HHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence            999999999999999 9999988   89999999999999999998655588999999999987763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.82  E-value=6.7e-20  Score=167.95  Aligned_cols=126  Identities=15%  Similarity=0.113  Sum_probs=117.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccccccc-CCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVD-NRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d-~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      .||||.|+++|++++|+.||++|+|+ +.+| ..|+||||+|+.+|+.+++++|+++    |++++.+|..|.+|+|.++
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadv-n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~----ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRH----GADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcCHHHHHHHcCCHHHHHHHHHc----CCchhhhccCCCchhHHHH
Confidence            37999999999999999999999998 4445 5699999999999999999999999    9999999999999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ..+..... ..+.+.+++++.+|.+|.||+++|+..   +..++++++.+.|+++.
T Consensus       101 ~~~~~~~~-~~~~~~~~~~~~~d~~g~t~l~~A~~~---~~~~~~~~ll~~ga~~~  152 (337)
T 4g8k_A          101 IAGSVKLL-KLFLSKGADVNECDFYGFTAFMEAAVY---GKVKALKFLYKRGANVN  152 (337)
T ss_dssp             HHTCHHHH-HHHHTTTCCTTCBCTTCCBHHHHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             hcccchhh-HHhhhccchhhhhccCCCCHHHHHHHc---CcHHHHHHHHHcCCCcc
Confidence            99999998 999999999999999999999999999   55689999999998765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.82  E-value=5.2e-21  Score=156.21  Aligned_cols=105  Identities=12%  Similarity=0.142  Sum_probs=84.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCcc-HHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWN-FLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~t-pLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      +||||+|+ .|+.+++++|+++++++ +.+|..|+| |||+|+..|+.+++++|++.    |+++|.+|.+|+||||+|+
T Consensus        46 ~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~tpl~~A~  119 (156)
T 1bi7_B           46 RRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRA----GARLDVRDAWGRLPVDLAE  119 (156)
T ss_dssp             CCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTCCCHHHHHH
T ss_pred             CCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHHCCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHH
Confidence            59999986 99999999999999998 788999999 99999999999999999999    9999999999999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhH
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNIL  112 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A  112 (326)
                      ..|+.+++ ++|+++|++++.+|..|.||.+-+
T Consensus       120 ~~~~~~~v-~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          120 ELGHRDVA-RYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHH-HHHSSCC-----------------
T ss_pred             HhCHHHHH-HHHHHcCCCCCccCcCcCcccccC
Confidence            99999999 999999999999999999998743

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.81  E-value=1.8e-20  Score=171.72  Aligned_cols=110  Identities=16%  Similarity=0.122  Sum_probs=99.5

Q ss_pred             CcHHHHHHHcCc---HHHHHHHHHhCCcccccccCCCccHHHHHHH----cCChhHHHHHHhcCccccc-----------
Q 020462            1 MTALHLAADRGY---VGIVKAIISKNLECYELVDNRGWNFLHYAMV----SFYVEELGNLLENNPLVRS-----------   62 (326)
Q Consensus         1 ~TpLh~Aa~~G~---~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~----~g~~~vv~~Ll~~~~~~g~-----------   62 (326)
                      +||||+|+..|+   .++++.|++.+....+.+|..|+||||+|+.    .|+.+++++|++.    +.           
T Consensus       165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~----~~~~~~~~~~~~i  240 (327)
T 1sw6_A          165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI----LMGWIVKKQNRPI  240 (327)
T ss_dssp             CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH----HHHHHHHGGGCCE
T ss_pred             CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH----HHHHHhcccchHH
Confidence            599999999999   7888999988744348889999999999999    8999999999876    22           


Q ss_pred             ----------------------------------cccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCH
Q 020462           63 ----------------------------------LIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSV  108 (326)
Q Consensus        63 ----------------------------------~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~Tp  108 (326)
                                                        ++|.+|.+|+||||+|+..|+.+++ ++|+++|+|++.+|.+|+||
T Consensus       241 ~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v-~~Ll~~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV-DALLDYGADPFIANKSGLRP  319 (327)
T ss_dssp             EEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHH-HHHHHTTCCTTCCCTTSCCG
T ss_pred             HhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHH-HHHHHcCCCCcccCCCCCCH
Confidence                                              5899999999999999999999999 99999999999999999999


Q ss_pred             HHhHhhC
Q 020462          109 TNILLNG  115 (326)
Q Consensus       109 L~~A~~~  115 (326)
                      ||+|++.
T Consensus       320 L~~A~~~  326 (327)
T 1sw6_A          320 VDFGAGL  326 (327)
T ss_dssp             GGGTCC-
T ss_pred             HHHHHhc
Confidence            9999865

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.80  E-value=5.9e-20  Score=166.56  Aligned_cols=105  Identities=22%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             CcHHHHHHHc---CcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHH
Q 020462            1 MTALHLAADR---GYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHV   77 (326)
Q Consensus         1 ~TpLh~Aa~~---G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~   77 (326)
                      +||||+|+..   |+.+++++|+++|+++ +.+|.+|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+
T Consensus       191 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~----gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          191 ELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKG----RALVGTVNEAGETALDI  265 (301)
T ss_dssp             ECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCCSCCCTTSCCHHHH
T ss_pred             ccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHH
Confidence            4899999997   8999999999999998 77899999999999999999999999999    99999999999999999


Q ss_pred             HHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCC
Q 020462           78 LAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYP  117 (326)
Q Consensus        78 Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~  117 (326)
                      |+..++.+++ ++|++.|++      .|.||||+|+..++
T Consensus       266 A~~~~~~~iv-~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          266 ARKKHHKECE-ELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHTCHHHH-HHHHHHHHH------TTSSCCC-------
T ss_pred             HHHcCCHHHH-HHHHHhcCC------CCCChhHHHHhcCC
Confidence            9999999999 999998876      68999999998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.80  E-value=2.2e-19  Score=142.99  Aligned_cols=103  Identities=22%  Similarity=0.174  Sum_probs=95.8

Q ss_pred             cccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCH
Q 020462           29 LVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSV  108 (326)
Q Consensus        29 ~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~Tp  108 (326)
                      .+|.+|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+..|+.+++ ++|+++|++++.+|.+|.||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVV-ELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCGGGCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHHcCCHHHH-HHHHHcCCcccCcCCCCCCH
Confidence            5689999999999999999999999999    999999999999999999999999999 99999999999999999999


Q ss_pred             HHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462          109 TNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus       109 L~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      ||+|+..   +..+++++|++.|+++...+.
T Consensus        80 L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~  107 (137)
T 3c5r_A           80 LHDAAKN---GHVDIVKLLLSYGASRNAVNI  107 (137)
T ss_dssp             HHHHHHT---TCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHc---CCHHHHHHHHHcCCCCCCCCC
Confidence            9999999   556899999999988764433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.79  E-value=4.4e-20  Score=160.75  Aligned_cols=109  Identities=18%  Similarity=0.160  Sum_probs=99.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccC-CCCCcHHHHH-
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGD-VKGNTPLHVL-   78 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d-~~G~TpLH~A-   78 (326)
                      +||||+||..|+.++++.|+++|+++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+| .+|+||||+| 
T Consensus        55 ~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~g~tpL~~A~  129 (229)
T 2vge_A           55 ITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQH----GAAIFATTLSDGATAFEKCD  129 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCSSTTCCTGGGCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCcccccCCCCCCHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999997 6999999999 


Q ss_pred             -HhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhC
Q 020462           79 -AAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        79 -a~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~  115 (326)
                       +..|+.+++ ++|++.|++++.+|..|.||++.+...
T Consensus       130 a~~~~~~~~v-~~Ll~~ga~~~~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A          130 PYREGYADCA-TYLADVEQSMGLMNSGAVYALWDYSAE  166 (229)
T ss_dssp             TTSTTHHHHH-HHHHHHHHHTTTSGGGEEEESSCBCCS
T ss_pred             HHhcChHHHH-HHHHHcCCCcccccCCchHHHHHHhhc
Confidence             999999999 999999988888888888877754433

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.78  E-value=4.6e-19  Score=141.16  Aligned_cols=103  Identities=12%  Similarity=-0.011  Sum_probs=96.0

Q ss_pred             CCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCccccc
Q 020462           23 NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVN  102 (326)
Q Consensus        23 ~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n  102 (326)
                      ++++ +..|..|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+. ++.+++ ++|+++|++++.+|
T Consensus         2 ~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v-~~Ll~~g~~~~~~~   74 (136)
T 1d9s_A            2 SPGI-HMLGGSSDAGLATAAARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVA-ELLLLHGAEPNCAD   74 (136)
T ss_dssp             CCCC-SCCCCCCSCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHH-HHHHHHTCCSSCCB
T ss_pred             CCCc-cCCCCCCccHHHHHHHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHH-HHHHHCCCCCCCcC
Confidence            3555 77899999999999999999999999999    99999999999999999999 999999 99999999999999


Q ss_pred             cc-CcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462          103 KQ-NVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus       103 ~~-g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .+ |.||||+|+..   +..+++++|++.|+++.
T Consensus        75 ~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~  105 (136)
T 1d9s_A           75 PATLTRPVHDAARE---GFLDTLVVLHRAGARLD  105 (136)
T ss_dssp             TTTTBCHHHHHHHH---TCHHHHHHHHHTCCCCC
T ss_pred             CCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCC
Confidence            99 99999999998   56689999999998765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.1e-19  Score=138.76  Aligned_cols=99  Identities=24%  Similarity=0.225  Sum_probs=93.8

Q ss_pred             cccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCH
Q 020462           29 LVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSV  108 (326)
Q Consensus        29 ~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~Tp  108 (326)
                      .+|.+|+||||+|+..|+.++++.|++.    |++++.+|..|+||||+|+..++.+++ ++|+++|++++.+|.+|+||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~d~~g~t~L~~A~~~~~~~~~-~~Ll~~g~~~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIV-KLLLAKGADVNARSKDGNTP   78 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT----TCCSSCCCSSSCCTTHHHHTTTCHHHH-HHHTTTTCCTTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHH-HHHHHcCCCCcccCCCCCCH
Confidence            4689999999999999999999999999    999999999999999999999999999 99999999999999999999


Q ss_pred             HHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462          109 TNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus       109 L~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |++|+..   +..+++++|++.|+++.
T Consensus        79 l~~A~~~---~~~~~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           79 EHLAKKN---GHHEIVKLLDAKGADVN  102 (115)
T ss_dssp             THHHHTT---TCHHHHHHHHTTSSSHH
T ss_pred             HHHHHHC---CCHHHHHHHHHcCCCCC
Confidence            9999998   56689999999998765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.77  E-value=5.8e-19  Score=138.00  Aligned_cols=100  Identities=14%  Similarity=0.074  Sum_probs=90.5

Q ss_pred             ccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHH
Q 020462           30 VDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVT  109 (326)
Q Consensus        30 ~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL  109 (326)
                      .+..|.||||+|+.+|+.++++.|++.    |.++|.+|.+|+||||+|+..++.+++ ++|++.|++++.+|.+|+|||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v-~~Ll~~g~~~~~~d~~g~tpL   77 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEIL-EFLLLKGADINAPDKHHITPL   77 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHT----TCCTTSCCTTSSCHHHHHHHTTCHHHH-HHHHTTTCCTTCCCTTSCCHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHc----CCCcCccCCCCCcHHHHHHHcCCHHHH-HHHHHcCCCCCcCCCCCCCHH
Confidence            367899999999999999999999999    999999999999999999999999999 999999999999999999999


Q ss_pred             HhHhhCCCchHHHHHHHHHHcCCCCCCC
Q 020462          110 NILLNGYPELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus       110 ~~A~~~~~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      |+|+..   +..+++++|++.|+++...
T Consensus        78 ~~A~~~---~~~~~v~~Ll~~ga~~~~~  102 (123)
T 3aaa_C           78 LSAVYE---GHVSCVKLLLSKGADKTVK  102 (123)
T ss_dssp             HHHHHH---TCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHc---CCHHHHHHHHHcCCCCCCc
Confidence            999998   5569999999999877633

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.77  E-value=1.2e-18  Score=138.73  Aligned_cols=89  Identities=22%  Similarity=0.324  Sum_probs=84.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        48 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~tpl~~A~~  122 (136)
T 2jab_A           48 LTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKH----GADVNAQDKFGKTAFDISIG  122 (136)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCcCcCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcc
Q 020462           81 VRPDEFDVRMIRKMQ   95 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g   95 (326)
                      .|+.+++ ++|++.|
T Consensus       123 ~~~~~~~-~~Ll~~G  136 (136)
T 2jab_A          123 NGNEDLA-EILQKLN  136 (136)
T ss_dssp             TTCHHHH-HHHHHC-
T ss_pred             CCCHHHH-HHHHHcC
Confidence            9999999 9998865

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.76  E-value=6.2e-20  Score=171.31  Aligned_cols=121  Identities=8%  Similarity=-0.002  Sum_probs=101.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcc--cccccCCCccHHHHHHHcCChhHHHHHHhcCcccccc---ccccCCCCCcHHH
Q 020462            2 TALHLAADRGYVGIVKAIISKNLEC--YELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSL---IIEGDVKGNTPLH   76 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~--~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~---in~~d~~G~TpLH   76 (326)
                      ||||+||+.|+.++++.|+++++..  ....|..|+||||+|+.+|+.+++++|++.    |++   .+..+.+ +||||
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~----gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL----APTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS----CTTTHHHHHSHHH-HHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC----CCCccccccCCCC-CCHHH
Confidence            8999999999999999999998732  123467889999999999999999999999    754   2222333 99999


Q ss_pred             HHHhcCCchHHHHHHhhcccCccc--ccccCcCHHHhHh-hCCCchHHHHHHHHHHcC
Q 020462           77 VLAAVRPDEFDVRMIRKMQANFDA--VNKQNVSVTNILL-NGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        77 ~Aa~~~~~~~v~~lLl~~g~d~~~--~n~~g~TpL~~A~-~~~~~~~~~i~~~L~~~g  131 (326)
                      +|+..|+.+++ ++|+++|++++.  .|.+|.||||+|+ ..   ++.+++++|++.|
T Consensus       169 ~Aa~~G~~eiv-~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~---G~~eiv~~Ll~~g  222 (376)
T 2aja_A          169 LAAENGHLHVL-NRLCELAPTEATAMIQAENYYAFRWAAVGR---GHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHTTCHHHH-HHHHHSCGGGHHHHHHHHHHHHHHHHHSTT---CCHHHHHHHTTSH
T ss_pred             HHHHCCCHHHH-HHHHHcCCccchhccCCCCCCHHHHHHHHC---CCHHHHHHHHhCC
Confidence            99999999999 999999999998  9999999999999 99   5568999998865

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.76  E-value=2.5e-18  Score=133.95  Aligned_cols=91  Identities=30%  Similarity=0.331  Sum_probs=87.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        36 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~A~~  110 (126)
T 1n0r_A           36 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAAR  110 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHHc----CCCCcccCCCCCCHHHHHHH
Confidence            58999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccC
Q 020462           81 VRPDEFDVRMIRKMQAN   97 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d   97 (326)
                      .++.+++ ++|+++|+|
T Consensus       111 ~~~~~~~-~~Ll~~Gad  126 (126)
T 1n0r_A          111 NGHLEVV-KLLLEAGAY  126 (126)
T ss_dssp             TTCHHHH-HHHHHHTCC
T ss_pred             cCcHHHH-HHHHHcCCC
Confidence            9999999 999999986

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=3.5e-18  Score=131.18  Aligned_cols=92  Identities=20%  Similarity=0.177  Sum_probs=73.3

Q ss_pred             ccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcC
Q 020462           28 ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVS  107 (326)
Q Consensus        28 ~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~T  107 (326)
                      ...|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+..|+.+++ ++|+++|++++.+|.+|+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~i~~~d~~g~tpLh~A~~~~~~~~v-~~Ll~~ga~~~~~d~~g~t   92 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN----GADVAAKDKNGSTPLHLAARNGHLEVV-KLLLEAGADVXAQDKFGKT   92 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHHcCCHHHH-HHHHHcCCCccccccCCCc
Confidence            45578888888888888888888888888    888888888888888888888888888 8888888888888888888


Q ss_pred             HHHhHhhCCCchHHHHHHHH
Q 020462          108 VTNILLNGYPELKEEIQKLS  127 (326)
Q Consensus       108 pL~~A~~~~~~~~~~i~~~L  127 (326)
                      |||+|+..+   ..+++++|
T Consensus        93 pl~~A~~~~---~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNG---NEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHT---CHHHHHHH
T ss_pred             HHHHHHHcC---CHHHHHHh
Confidence            888888874   44555554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.74  E-value=4.5e-18  Score=152.41  Aligned_cols=91  Identities=23%  Similarity=0.337  Sum_probs=87.4

Q ss_pred             CcHHHHHHHc---CcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHH
Q 020462            1 MTALHLAADR---GYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHV   77 (326)
Q Consensus         1 ~TpLh~Aa~~---G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~   77 (326)
                      +||||+||..   |+.++++.|+++|+++ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+
T Consensus       170 ~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~----gad~~~~d~~g~tpL~~  244 (278)
T 1dcq_A          170 ETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRG----KASIEIANESGETPLDI  244 (278)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCccCCCCCHHHH
Confidence            5999999999   8999999999999998 77899999999999999999999999999    99999999999999999


Q ss_pred             HHhcCCchHHHHHHhhcccC
Q 020462           78 LAAVRPDEFDVRMIRKMQAN   97 (326)
Q Consensus        78 Aa~~~~~~~v~~lLl~~g~d   97 (326)
                      |+..|+.+++ ++|+++|++
T Consensus       245 A~~~~~~~~v-~~Ll~~ga~  263 (278)
T 1dcq_A          245 AKRLKHEHCE-ELLTQALSG  263 (278)
T ss_dssp             HHHTTCHHHH-HHHHHHHTT
T ss_pred             HHHcCCHHHH-HHHHHcCCC
Confidence            9999999999 999998875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=3.7e-18  Score=131.10  Aligned_cols=85  Identities=20%  Similarity=0.197  Sum_probs=81.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus        25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           25 GKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA----GADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCccccccCCCcHHHHHHH
Confidence            48999999999999999999999998 77899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHH
Q 020462           81 VRPDEFDVRMI   91 (326)
Q Consensus        81 ~~~~~~v~~lL   91 (326)
                      .|+.+++ ++|
T Consensus       100 ~~~~~~~-~~L  109 (110)
T 2zgd_A          100 NGNEDLA-EIL  109 (110)
T ss_dssp             HTCHHHH-HHH
T ss_pred             cCCHHHH-HHh
Confidence            9999998 776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.71  E-value=5.3e-19  Score=164.97  Aligned_cols=117  Identities=9%  Similarity=-0.029  Sum_probs=101.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCccc--ccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccc--cCCCCCcHHHH
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECY--ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIE--GDVKGNTPLHV   77 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~--~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~--~d~~G~TpLH~   77 (326)
                      ||||+||+.|+.+++++|+++|+|..  +..+.+ +||||+|+.+|+.+++++|++.    |++++.  +|.+|+||||+
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~----ga~~~~~~~d~~g~TpL~~  204 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL----APTEATAMIQAENYYAFRW  204 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS----CGGGHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc----CCccchhccCCCCCCHHHH
Confidence            79999999999999999999998631  222333 9999999999999999999999    999888  89999999999


Q ss_pred             HH-hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           78 LA-AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        78 Aa-~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      |+ ..|+.+++ ++|++.|+       .|.||+++|+..++   .+++++|.+.|++.
T Consensus       205 Aa~~~G~~eiv-~~Ll~~ga-------~~~taL~~Aa~~g~---~evv~lL~~~ga~~  251 (376)
T 2aja_A          205 AAVGRGHHNVI-NFLLDCPV-------MLAYAEIHEFEYGE---KYVNPFIARHVNRL  251 (376)
T ss_dssp             HHSTTCCHHHH-HHHTTSHH-------HHHHHHHCTTTTTT---TTHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHH-HHHHhCCC-------ccchHHHHHHHCCC---HHHHHHHHhcCccc
Confidence            99 99999999 99999774       38999999999954   46888888876543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.70  E-value=1e-18  Score=146.34  Aligned_cols=120  Identities=16%  Similarity=0.115  Sum_probs=100.6

Q ss_pred             HHHcCcHHHHHHHHHhCCccc----------ccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHH
Q 020462            7 AADRGYVGIVKAIISKNLECY----------ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         7 Aa~~G~~~iv~~Ll~~~~d~~----------~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      |++.|..+.++.|++.+.+..          ...|.+|+||||+|+..|+.++++.|++     |.++|.+|.+|+||||
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~   81 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALL   81 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHH
Confidence            344555566666664432221          1236789999999999999999999997     5789999999999999


Q ss_pred             HHHhcCCchHHHHHHhhcccCccccc-ccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           77 VLAAVRPDEFDVRMIRKMQANFDAVN-KQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        77 ~Aa~~~~~~~v~~lLl~~g~d~~~~n-~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      +|+..|+.+++ ++|+++|++++.+| .+|+||||+|+..   +..+++++|++.|+++.
T Consensus        82 ~A~~~~~~~~v-~~Ll~~ga~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~  137 (183)
T 3deo_A           82 FVAGLGSDKCV-RLLAEAGADLDHRDMRGGLTALHMAAGY---VRPEVVEALVELGADIE  137 (183)
T ss_dssp             HHHHHTCHHHH-HHHHHTTCCTTCCCSSSSCCHHHHHHHT---TCHHHHHHHHHHTCCTT
T ss_pred             HHHHcCCHHHH-HHHHHcCCCCCcCCCCCCCCHHHHHHhc---CcHHHHHHHHHcCCCCc
Confidence            99999999999 99999999999998 8999999999999   55689999999998775

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.70  E-value=2.6e-17  Score=153.09  Aligned_cols=109  Identities=15%  Similarity=0.113  Sum_probs=85.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+.
T Consensus       236 ~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~LL~~----Gad~~~~d~~G~TpL~~A~~  310 (368)
T 3jue_A          236 ATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKR----GADLGARDSEGRDPLTIAME  310 (368)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCcHHHHHHHHHC----cCCCCCcCCCCCCHHHHHHH
Confidence            59999999999999999999999998 78899999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcc---cCcccccccCcCHHHhHhhC
Q 020462           81 VRPDEFDVRMIRKMQ---ANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g---~d~~~~n~~g~TpL~~A~~~  115 (326)
                      .++.+++ ++|++.+   .+....+..+.|+++++...
T Consensus       311 ~g~~~iv-~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          311 TANADIV-TLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             TTCHHHH-HHHHHHHC----------------------
T ss_pred             CCCHHHH-HHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9999999 9998765   45556677888999887654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.70  E-value=6.4e-18  Score=145.64  Aligned_cols=100  Identities=18%  Similarity=0.138  Sum_probs=79.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~-~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      +||||+||..|+.++++.|+++ +.++ +.+|..|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||+|+
T Consensus       107 ~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~g~t~l~~A~  181 (222)
T 3ehr_A          107 STALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAK----GARTDLRNIEKKLAFDMAT  181 (222)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH----TCCSCCCCTTSCCHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCccccCCCCCHHHHhc
Confidence            5999999999999999999999 8887 78899999999999999999999999999    9999999999999999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCc
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNV  106 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~  106 (326)
                      ..++.+++ +.|++.|++.+..|.+|.
T Consensus       182 ~~~~~~~l-~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          182 NAACASLL-KKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             SHHHHHHH-C-----------------
T ss_pred             chhHHHHH-HHHhccchhhhccchhhh
Confidence            99999998 999999999988887664

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.68  E-value=1.4e-18  Score=152.44  Aligned_cols=98  Identities=16%  Similarity=0.154  Sum_probs=90.3

Q ss_pred             cCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCccccc-ccCcCHH
Q 020462           31 DNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVN-KQNVSVT  109 (326)
Q Consensus        31 d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n-~~g~TpL  109 (326)
                      +.+|+||||+|+..|+.++++.|++     |+++|.+|.+|+||||+|+..|+.+++ ++|+++|++++.+| .+|.|||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v-~~Ll~~ga~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCV-RLLAEAGADLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHHHTCHHHH-HHHHHTTCCTTCCCSSSCCCHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHCCCHHHH-HHHHHcCCCCCcCCCCCCCCHH
Confidence            5689999999999999999999987     478999999999999999999999999 99999999999999 8899999


Q ss_pred             HhHhhCCCchHHHHHHHHHHcCCCCCCC
Q 020462          110 NILLNGYPELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus       110 ~~A~~~~~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      |+|+..   +..+++++|++.|+++...
T Consensus       116 ~~A~~~---g~~~~v~~Ll~~ga~~~~~  140 (244)
T 3ui2_A          116 HMAAGY---VRPEVVEALVELGADIEVE  140 (244)
T ss_dssp             HHHHHT---TCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHc---CCHHHHHHHHHCCCCCCCC
Confidence            999999   5568999999999887633

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 6e-09
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
          +T LH+A+  G++ IVK ++ +      + + +    LH A  + + E    LL+N   V
Sbjct: 1  LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 61 RSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQAN 97
           +          TPLH  AA       V+++ +  AN
Sbjct: 60 NAK----AKDDQTPLH-CAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 32/167 (19%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           +T LHLAA  G+  +V  ++SK      L +  G   LH      +V     L+++  +V
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

Query: 61  RSLIIEG-----------------------------DVKGNTPLHVLAAVRPDEFDVRMI 91
            +    G                                G +PLH  AA +     V ++
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDIVTLL 349

Query: 92  RKMQANFDAVNKQNVSVTNI-LLNGYPELKEEIQKLSKDVGRGQYSD 137
            K  A+ + V+    +   I    GY  + + ++ ++ +      SD
Sbjct: 350 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 19/126 (15%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            T LH+A+  G + +VK ++             G++ LH A    + + +  LL+N    
Sbjct: 298 YTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 356

Query: 61  RSLIIEGDVKGNTPLHVLAAVRPDEFDV----RMIRKMQANFDAVNKQNVSVTNILLNGY 116
                E    G TPL +  A R     V    +++    +     +K  +S        +
Sbjct: 357 N----EVSSDGTTPLAI--AKRLGYISVTDVLKVVTDETSFVLVSDKHRMS--------F 402

Query: 117 PELKEE 122
           PE  +E
Sbjct: 403 PETVDE 408

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 7e-09
 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 8/161 (4%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            T LH       + +VK ++          DN G + L  A+ S    + G        +
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 166

Query: 61  RSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIR-KMQANFDAVNKQNVSVTNILLNGYPEL 119
              +I  D    T LH +             +  +      + K+         N     
Sbjct: 167 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 120 KEEIQKLSKDVGRGQYSDGVIRGPKYLVGQNDDTKDDYKDT 160
                  +   G  + S       K+++    + +D   DT
Sbjct: 227 ------PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
            T L++AA  G + IV A++    +   + +  G   + + 
Sbjct: 260 DTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 14/117 (11%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECY------------ELVDNRGWNFLHYAMVSFYVE 48
            T LH       +    A     L+              +   N   +  +        +
Sbjct: 178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-NGERKD 236

Query: 49  ELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQN 105
            +   L+   ++ +++   D  G+T L+ +AA   +   V  +    A+    NK  
Sbjct: 237 SILENLDLKWIIANMLNAQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSG 292

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRG---WNFLHYAMVSFYVEELGNLLENN 57
            TAL  AA++G+V ++K ++ +        DN G         +     VE + +LL ++
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 58  PLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQ 104
               + +     +G TPL +    +      R++ +     +  +  
Sbjct: 209 ---GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLEN 56
            T L LA ++ ++G+V+ ++ +        D+ G   L  A+     +    L + 
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLEC---YELVDNRGWNFLHYAM 42
           T LH+A  +G +  V  +++   +     ++ +N     LH A+
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 48

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 1  MTALHLAADRGYVGIVKAIISK--NLECYELVDNRGWNFLHYA 41
           TALHLA    +   +  ++      E  +L ++ G   LH A
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 8e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
            T + LAA  G + +V  +I +     E VD         A
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
            TALH AA    + IVK ++ +     +  D  G   +  A     +E +  L++    V
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 61  RSLIIEGDVKGNTPLHVLAA 80
            ++    D   +T    LA 
Sbjct: 248 EAV----DATDHTARQ-LAQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 11/129 (8%)

Query: 2   TALHLA-ADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLV 60
           + + L     G   I + I  +++   +         LH+   +   E+  +L+ +    
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHE--A 57

Query: 61  RSLIIEG------DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLN 114
           +  I  G      D   NTPL +    R       +++           +  ++     N
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 117

Query: 115 GYPELKEEI 123
               +   +
Sbjct: 118 RDFGMMVYM 126

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 9e-05
 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 1  MTALHLAADRGYVGIVKAIISKNLECYELV---DNRGWNFLHYAMVSFY 46
           + LHLA       +   +I +       +   +N     LH A+++  
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 2  TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYA 41
            LH A        V+ ++          D  G   LH++
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 11/128 (8%), Positives = 32/128 (25%), Gaps = 5/128 (3%)

Query: 1   MTALHLAADRGYVGIVKAIIS--KNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP 58
                +AA  G    +  +     + E  +++    +     A  + ++  L  L E  P
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 59  LVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPE 118
               ++     +      + A        +  + ++         Q  +           
Sbjct: 151 --TEIMAMIQAENYHAFRLAAENGHLHV-LNRLCELAPTEATAMIQAENYYAFRWAAVGR 207

Query: 119 LKEEIQKL 126
               +   
Sbjct: 208 GHHNVINF 215

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 16/126 (12%), Positives = 35/126 (27%), Gaps = 6/126 (4%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLEC-YELVDNRGWNFLHYAMVSFYVEELGNLLENNPL 59
             A  LAA+ G++ ++  +          ++    ++    A  + ++  L  L E  P 
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 186

Query: 60  VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRK----MQANFDAVNKQNVSVTNILLNG 115
             + +I+                       ++        A           V   +   
Sbjct: 187 EATAMIQ-AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 245

Query: 116 YPELKE 121
              LKE
Sbjct: 246 VNRLKE 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 1   MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLE 55
            T LH AA  G     + ++    +  E V+  G      A      E++   LE
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVA-----DEDILGYLE 281

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.85
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.85
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.83
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.83
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.82
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.82
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.8
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.8
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.79
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.79
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.79
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.79
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.73
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.67
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.64
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.61
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.6
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.57
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.49

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=4.2e-27  Score=182.33  Aligned_cols=107  Identities=20%  Similarity=0.100  Sum_probs=103.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      |||++|+++|+.++++.|+++|+|+ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+..
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~----g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK----GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHS----SCTTTCCSSSCSCHHHHHHTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccc----cceeeecccccccchhhhhhc
Confidence            8999999999999999999999998 77899999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhh
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLN  114 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~  114 (326)
                      |+.+.+ ++|+++|+|++.+|++|+||+|+|..
T Consensus        79 ~~~~~v-~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          79 GHVSCV-KLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TCCHHH-HHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             Cchhhh-hhhhcccccceeeCCCCCCHHHHHhH
Confidence            999999 99999999999999999999999843

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-25  Score=173.92  Aligned_cols=119  Identities=15%  Similarity=0.046  Sum_probs=110.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCC-cHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGN-TPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~-TpLH~Aa   79 (326)
                      .++||+||+.|+.++++.|+++|+|+ +.+|.+|+||||+|+ .|+.+++++|++.    |+++|.+|..|. ||||+|+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH----GAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT----TCCCCCCCTTTCCCHHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccc----cccccccccccccccccccc
Confidence            37899999999999999999999998 788999999999775 7999999999999    999999999886 6999999


Q ss_pred             hcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHH
Q 020462           80 AVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKD  129 (326)
Q Consensus        80 ~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~  129 (326)
                      +.|+.+++ ++|+++|+|++.+|.+|+||+|+|++.   +..+++++|++
T Consensus        78 ~~g~~~~v-~~Ll~~ga~~~~~d~~G~T~l~~A~~~---g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTL-VVLHRAGARLDVRDAWGRLPVDLAEEL---GHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHH-HHHHHHTCCSSCCCTTCCCHHHHHHHH---TCHHHHHHHSS
T ss_pred             cccccccc-ccccccccccccccCCCCCHHHHHHHc---CCHHHHHHHHh
Confidence            99999999 999999999999999999999999999   55688888865

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.8e-25  Score=172.63  Aligned_cols=122  Identities=18%  Similarity=0.107  Sum_probs=109.2

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ++||.||..|+.++++.|+++|+|+ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~----g~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccc----ccccccccccCcccccccchh
Confidence            5799999999999999999999998 78899999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHHhhcccCcccccc-cCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           82 RPDEFDVRMIRKMQANFDAVNK-QNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~-~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                      |+.+++ ++|+++|+|++.++. +|+||++++..... +..+++++|.+.
T Consensus        78 g~~~~v-~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~-g~~eiv~~L~~~  125 (130)
T d1ycsb1          78 NNVQVC-KFLVESGAAVFAMTYSDMQTAADKCEEMEE-GYTQCSQFLYGV  125 (130)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCSSSCCCHHHHCCSSST-TCCCHHHHHHHH
T ss_pred             hHHHHH-HHHHHcCCCcccccCCCCCCHHHHHHHHHc-ChHHHHHHHHhH
Confidence            999999 999999999998875 68999887753321 335778887764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.1e-24  Score=171.75  Aligned_cols=120  Identities=18%  Similarity=0.114  Sum_probs=107.6

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc----------------------
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL----------------------   59 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~----------------------   59 (326)
                      ||||.||+.|+.++++.|+++|++. + .|..|+||||+|+..++.+.++.++.....                      
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            8999999999999999999999987 3 599999999999999999999887765211                      


Q ss_pred             -------ccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHH
Q 020462           60 -------VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLS  127 (326)
Q Consensus        60 -------~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L  127 (326)
                             .+.+.+.+|.+|+||||+|+..|+.+++ ++|++.|+|++.+|++|.||||+|+..+   ..+++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv-~~ll~~gad~~~~d~~g~Tpl~~A~~~g---~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNG---NEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhhee-eeccccccCCcccCCCCCCHHHHHHHcC---CHHHHHhC
Confidence                   5778899999999999999999999999 9999999999999999999999999994   45777765

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.9e-23  Score=175.03  Aligned_cols=133  Identities=23%  Similarity=0.201  Sum_probs=108.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .++++.|+..|+.++++.|+++++++ +.+|.+|+||||+|+.+|+.+++++|++.    |++++.+|.+|.||||+|+.
T Consensus        71 ~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~----g~d~~~~~~~~~t~L~~a~~  145 (223)
T d1uoha_          71 WSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG----GANPDAKDHYEATAMHRAAA  145 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCccchhhhh
Confidence            36788888888888888888888887 67788888888888888888888888887    88888888888888888888


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCcccC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGVIRG  142 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~  142 (326)
                      .++.+.. ++|.+.+.+++.+|.+|+||||+|+..   +..+++++|++.|+++...+...+
T Consensus       146 ~~~~~~~-~~L~~~~~~i~~~d~~g~TpL~~Aa~~---g~~~~v~~LL~~Gad~~~~d~~g~  203 (223)
T d1uoha_         146 KGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDE---ERVEEAKLLVSQGASIYIENKEEK  203 (223)
T ss_dssp             TTCHHHH-HHHHHTTCCSCCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             cCCcchh-hhhccccceeeeccCCCCceecccccc---CcHHHHHHHHHCCCCCCCCCCCCC
Confidence            8888877 888888888888888888888888888   455788888888887776554443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.1e-22  Score=176.75  Aligned_cols=133  Identities=22%  Similarity=0.226  Sum_probs=102.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCc----------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNP----------------------   58 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~----------------------   58 (326)
                      +||||+||..|+.++++.|+++|+++ +..|.+|+||||+|+..++.++++.|++...                      
T Consensus        46 ~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (255)
T d1oy3d_          46 QTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS  124 (255)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------
T ss_pred             CCccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccch
Confidence            59999999999999999999999998 6778899999999999999998888865310                      


Q ss_pred             ---------------------cccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccc-cccCcCHHHhHhhCC
Q 020462           59 ---------------------LVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAV-NKQNVSVTNILLNGY  116 (326)
Q Consensus        59 ---------------------~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~-n~~g~TpL~~A~~~~  116 (326)
                                           ..+.+++.+|.+|.||||+|+..++.+++ ++|++.+++.+.. +..|.||||+|++. 
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v-~~Ll~~~~~~~~~~~~~g~TpL~~A~~~-  202 (255)
T d1oy3d_         125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV-RLLRDAGADLNKPEPTCGRTPLHLAVEA-  202 (255)
T ss_dssp             -------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHHTCCTTCCCTTTCCCHHHHHHHT-
T ss_pred             HHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccc-cchhcccccccccccccccccccccccc-
Confidence                                 03556677788888888888888777777 7777777776653 46677777777777 


Q ss_pred             CchHHHHHHHHHHcCCCCCCCC
Q 020462          117 PELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus       117 ~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                        +..+++++|+++|+++...+
T Consensus       203 --~~~~~v~~Ll~~gadin~~d  222 (255)
T d1oy3d_         203 --QAASVLELLLKAGADPTARM  222 (255)
T ss_dssp             --TCHHHHHHHHHTTCCTTCCC
T ss_pred             --cHHHHHHHHHHCCCCCCCCC
Confidence              44567777777776665443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.9e-22  Score=163.04  Aligned_cols=125  Identities=17%  Similarity=0.126  Sum_probs=111.4

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcccc-----cccCCCccHHHHHHHc---CChhHHHHHHhcCccccccccccCCCCCcH
Q 020462            3 ALHLAADRGYVGIVKAIISKNLECYE-----LVDNRGWNFLHYAMVS---FYVEELGNLLENNPLVRSLIIEGDVKGNTP   74 (326)
Q Consensus         3 pLh~Aa~~G~~~iv~~Ll~~~~d~~~-----~~d~~G~tpLh~A~~~---g~~~vv~~Ll~~~~~~g~~in~~d~~G~Tp   74 (326)
                      .|+.|++.++++.+..++..+.|...     ..+..|+||||+|+..   ++.+++++|++.    |+++|.+|.+|+||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~----gadin~~d~~g~Tp   84 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN----SGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH----CSCTTCCCTTCCCH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc----CCChhhhhhhhccc
Confidence            46688899999999999999887532     2377899999999975   677999999999    99999999999999


Q ss_pred             HHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           75 LHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        75 LH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      ||+|+..|+.+++ ++|+++|+|++.+|.+|+||||+|.+.   +..+++++|.+.++++.
T Consensus        85 Lh~A~~~~~~~~v-~~Ll~~gad~~~~d~~g~tpL~~A~~~---~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          85 LHYCCLTDNAECL-KLLLRGKASIEIANESGETPLDIAKRL---KHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHHTTCC
T ss_pred             ccccccccccccc-ccccccCccccccCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCCC
Confidence            9999999999999 999999999999999999999999999   55689999999776655

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.6e-23  Score=164.15  Aligned_cols=121  Identities=14%  Similarity=0.043  Sum_probs=94.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      +|||+||..|+.++++.|+++|+|+ +.+|.+|+||||+|+ .|+.|++++|++.    |++++.++.+|.++++.++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~----~a~~~~~~~~~~~~l~~~~~~   76 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLR----GANPDLKDRTGFAVIHDAARA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccc----ccccccccccCcccccccccc
Confidence            6999999999999999999999998 788999999999886 7899999999998    677777777777777777666


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGR  132 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~  132 (326)
                      ++.+.+ +.|++.+.+++..|..|.+|+++|...   ...++++.|++++.
T Consensus        77 ~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          77 GFLDTL-QTLLEFQADVNIEDNEGNLPLHLAAKE---GHLRVVEFLVKHTA  123 (156)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHSC
T ss_pred             cccccc-ccccccccccccccccccccccccccc---cccccccccccccc
Confidence            666666 666666666666666666666666666   33455666665554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.6e-22  Score=168.16  Aligned_cols=134  Identities=16%  Similarity=0.032  Sum_probs=115.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc---------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL---------------------   59 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~---------------------   59 (326)
                      +||||+||.+|+.+.++.|++.+++..+.+|.+|+||||+|+..|+.+++++|++....                     
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            58999999999999999999988877789999999999999999999999999875100                     


Q ss_pred             ----------------------------------------------ccccccccCCCCCcHHHHHHhcCCchHHHHHHhh
Q 020462           60 ----------------------------------------------VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRK   93 (326)
Q Consensus        60 ----------------------------------------------~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~   93 (326)
                                                                    .+...+.+|.+|+||||+|+..|+.+++ ++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI-ELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHH-HHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccc-ccccc
Confidence                                                          3455666788999999999999999998 88888


Q ss_pred             cc-cCcccccccCcCHHHhHhhCCCchHHHHHHHHHH-cCCCCCCCC
Q 020462           94 MQ-ANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKD-VGRGQYSDG  138 (326)
Q Consensus        94 ~g-~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~-~g~~~~~~~  138 (326)
                      .+ .+++.+|.+|+||||+|+..   +..+++++|++ .|+++...+
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~---~~~~~v~~Ll~~~gad~~~~d  203 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAE---GHGDAAVLLVEKYGAEYDLVD  203 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHT---TCHHHHHHHHHHHCCCSCCCC
T ss_pred             cccccccccccccCCchhhhccc---ccHHHHHHHHHhcCCCCCCcC
Confidence            76 78899999999999999999   56689999886 587776433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=6.9e-22  Score=166.39  Aligned_cols=119  Identities=23%  Similarity=0.222  Sum_probs=95.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccc-----------------------------------------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECY-----------------------------------------------------   27 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~-----------------------------------------------------   27 (326)
                      +||||+||+.|+.++++.|++.+++++                                                     
T Consensus        24 ~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
T d1ot8a_          24 ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE  103 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            599999999999999999999887542                                                     


Q ss_pred             -------------ccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhc
Q 020462           28 -------------ELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKM   94 (326)
Q Consensus        28 -------------~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~   94 (326)
                                   +.+|..|+||||+++.+++.++++.+++.    +.++|.+|.+|+||||+|+..|+.+++ ++|+++
T Consensus       104 ~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~----~~~~~~~d~~g~TpL~~A~~~g~~~~v-~~Ll~~  178 (209)
T d1ot8a_         104 GMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH----HANRDAQDDKDETPLFLAAREGSYEAS-KALLDN  178 (209)
T ss_dssp             THHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTTCHHHH-HHHHHT
T ss_pred             hhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc----cccccccccccccccchhccccHHHHH-HHHHHC
Confidence                         34566777888888888888888777777    777888888888888888888888887 888888


Q ss_pred             ccCcccccccCcCHHHhHhhCCCchHHHHHHHH
Q 020462           95 QANFDAVNKQNVSVTNILLNGYPELKEEIQKLS  127 (326)
Q Consensus        95 g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L  127 (326)
                      |+|++.+|.+|+||||+|++.+   +.+++++|
T Consensus       179 gad~n~~d~~g~Tpl~~A~~~~---~~~iv~lL  208 (209)
T d1ot8a_         179 FANREITDHMDRLPRDVASERL---HHDIVRLL  208 (209)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTT---CHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcC---CHHHHhhc
Confidence            8888888888888888888884   34666654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.6e-22  Score=167.74  Aligned_cols=134  Identities=15%  Similarity=0.091  Sum_probs=102.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHH----hCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc-----------------
Q 020462            1 MTALHLAADRGYVGIVKAIIS----KNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL-----------------   59 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~----~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~-----------------   59 (326)
                      +||||+||+.|+.++++.|++    .+.++ +.+|.+|+||||+|+.+|+.++++.|++....                 
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~   82 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE   82 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccccccccccccccccccc
Confidence            699999999999999999885    67777 77899999999999999999999999986100                 


Q ss_pred             --------------------------------------------------ccccccccCCCCCcHHHHHHhcCCchHHHH
Q 020462           60 --------------------------------------------------VRSLIIEGDVKGNTPLHVLAAVRPDEFDVR   89 (326)
Q Consensus        60 --------------------------------------------------~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~   89 (326)
                                                                        ........+..|++|||.|+..+..+.. +
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-~  161 (228)
T d1k1aa_          83 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV-Q  161 (228)
T ss_dssp             TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH-H
T ss_pred             cccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh-h
Confidence                                                              0011112334567777777777777776 7


Q ss_pred             HHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           90 MIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        90 lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      .+++.|.+.+.+|.+|.|||++|+..   +..+++++|++.|+++...+.
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~Gad~n~~d~  208 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGR---GLLPLVRTLVRSGADSSLKNC  208 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHH---TCHHHHHHHHHTTCCTTCCCT
T ss_pred             hhhhhccccccccccCcchHHHHHHc---CCHHHHHHHHHCCCCCCCCCC
Confidence            77788888888888888888888887   445778888888877664433

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-21  Score=166.00  Aligned_cols=108  Identities=27%  Similarity=0.289  Sum_probs=52.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      ||||+||..|+.++++++++.+.+. ...+..+.++++.++..++.+++++|++.    |.+++.+|.+|+||||+|+..
T Consensus        39 TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~----~~d~~~~d~~g~tpL~~A~~~  113 (223)
T d1uoha_          39 TALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGK----GAQVNAVNQNGCTPLHYAASK  113 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccchhHHHhcc----CceeEeeCCCCCchhhHHHHc
Confidence            4455555555555555444444443 23344444444444444444444444444    444444444445555555444


Q ss_pred             CCchHHHHHHhhcccCcccccccCcCHHHhHhhC
Q 020462           82 RPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        82 ~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~  115 (326)
                      |+.+.+ ++|+++|+|++.+|.+|.|||+++...
T Consensus       114 ~~~e~~-~~Ll~~g~d~~~~~~~~~t~L~~a~~~  146 (223)
T d1uoha_         114 NRHEIA-VMLLEGGANPDAKDHYEATAMHRAAAK  146 (223)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHH-HHHHHCCCCCCCcCCCCCccchhhhhc
Confidence            444444 444444444444444444555444444

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.5e-22  Score=158.80  Aligned_cols=122  Identities=15%  Similarity=0.108  Sum_probs=84.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhC-CcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            2 TALHLAADRGYVGIVKAIISKN-LECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~-~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      ++||.||.+|+.++|+.|++.+ .++ +..|..|+||||+|+ .|+.+++++|++.    +.+++.++.+|.+|++.++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~----~~~~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMM-FGSTAIALELLKQ----GASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSC-TTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCccccccc-ccccccccccccc----cccccccccccccccccccc
Confidence            3688888888888888888764 454 677888888888876 4777888888877    66666666666666666666


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      .++.+.. ++++++|++++.+|.+|.||||+|+..   +..+++++|. .|+++
T Consensus        78 ~~~~~~~-~~~l~~~~~~n~~~~~~~t~L~~A~~~---~~~~i~~~L~-~~~~~  126 (156)
T d1bd8a_          78 TGFLDTL-KVLVEHGADVNVPDGTGALPIHLAVQE---GHTAVVSFLA-AESDL  126 (156)
T ss_dssp             TTCHHHH-HHHHHTTCCSCCCCTTSCCHHHHHHHH---TCHHHHHHHH-TTSCT
T ss_pred             ccccccc-ccccccccccccccCCCCeeecccccc---cccccccccc-ccccc
Confidence            6666666 666666666666666666666666665   3335555554 34443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.6e-21  Score=167.85  Aligned_cols=127  Identities=19%  Similarity=0.217  Sum_probs=111.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcc--cccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLEC--YELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVL   78 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~--~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~A   78 (326)
                      +||||+||+.|+.+++++|++++++.  .+..|.+|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+|
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~----ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA----GAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCSSCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc----cccccccccccchhhhhh
Confidence            59999999999999999999998663  367789999999999999999999999999    999999999999999999


Q ss_pred             HhcCCchHHHHHHhhcc-----------------------------------------------cCcccccccCcCHHHh
Q 020462           79 AAVRPDEFDVRMIRKMQ-----------------------------------------------ANFDAVNKQNVSVTNI  111 (326)
Q Consensus        79 a~~~~~~~v~~lLl~~g-----------------------------------------------~d~~~~n~~g~TpL~~  111 (326)
                      +..++.+++ ++|++.+                                               .+++.+|.+|.||||+
T Consensus        86 ~~~~~~~~~-~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          86 CRVRAHTCA-CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             TTTTCHHHH-HHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hccCchHHH-HHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            999988887 6664422                                               3456788999999999


Q ss_pred             HhhCCCchHHHHHHHHHHcCCCCC
Q 020462          112 LLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus       112 A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+..   +..+++++|++.+..+.
T Consensus       165 A~~~---~~~~~v~~Ll~~~~~~~  185 (255)
T d1oy3d_         165 AVIH---KDAEMVRLLRDAGADLN  185 (255)
T ss_dssp             HHHT---TCHHHHHHHHHHTCCTT
T ss_pred             cccc---cccccccchhccccccc
Confidence            9999   55689999999887655

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.9e-21  Score=176.18  Aligned_cols=129  Identities=19%  Similarity=0.177  Sum_probs=114.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .||||.|++.|+.++++.|+++|+++ +..+..+.||||.++..++.++++.+++.    |+++|.+|.+|+||||+|++
T Consensus       265 ~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~~----g~~in~~d~~G~T~Lh~A~~  339 (408)
T d1n11a_         265 LTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQH----QADVNAKTKLGYSPLHQAAQ  339 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             CChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeeccc----cccccccCCCCCCHHHHHHH
Confidence            47999999999999999999999998 67788999999999999999999999998    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      .|+.+++ ++|+++|+|++.+|++|+||||+|.+.++....++++.+.+.+....
T Consensus       340 ~g~~~iv-~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~  393 (408)
T d1n11a_         340 QGHTDIV-TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL  393 (408)
T ss_dssp             TTCHHHH-HHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC
T ss_pred             cCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccc
Confidence            9999999 99999999999999999999999999976644455555555554443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.3e-21  Score=173.43  Aligned_cols=76  Identities=24%  Similarity=0.209  Sum_probs=55.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCCh---hHHHHHHhcCccccccccccCCCCCcHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYV---EELGNLLENNPLVRSLIIEGDVKGNTPLHV   77 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~---~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~   77 (326)
                      +||||+||..|+.++|+.|+++|+++ +.+|..|+||||.|+..++.   +.++.+++.   ....++.+|..|+||||.
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~---l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDY---LYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH---HGGGGGEECTTCCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHH---HhhhhhhcccccCCHHHH
Confidence            59999999999999999999999998 78899999999999987652   222233322   123344555666666665


Q ss_pred             HHh
Q 020462           78 LAA   80 (326)
Q Consensus        78 Aa~   80 (326)
                      ++.
T Consensus       184 ~~~  186 (301)
T d1sw6a_         184 III  186 (301)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.2e-21  Score=163.64  Aligned_cols=127  Identities=22%  Similarity=0.223  Sum_probs=103.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc---------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL---------------------   59 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~---------------------   59 (326)
                      +||||+||..|+.++++.|+++|+|+ +.+|.+|+||||.|+.+++.++++.|++....                     
T Consensus        40 ~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a  118 (221)
T d1iknd_          40 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA  118 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH
T ss_pred             Cccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHH
Confidence            68999999999999999999999988 77788899999999988888888877754100                     


Q ss_pred             --------------cccccccc-CCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHH
Q 020462           60 --------------VRSLIIEG-DVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQ  124 (326)
Q Consensus        60 --------------~g~~in~~-d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~  124 (326)
                                    .|..++.+ |.+|+||||+|++.|+.+++ ++|+++|+|++.+|.+|+||+|+|+..   ...+++
T Consensus       119 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v-~~Ll~~gad~~~~~~~G~tpl~~A~~~---~~~~~~  194 (221)
T d1iknd_         119 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV-SLLLKCGADVNRVTYQGYSPYQLTWGR---PSTRIQ  194 (221)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH-HHHHTTTCCSCCCCTTCCCGGGGCTTS---SCHHHH
T ss_pred             hhcCChhheeeecccCcccccccccCCCCccccccccccHHHH-HHHHhcCCcccccCCCCCCHHHHHHHC---CCHHHH
Confidence                          24455544 45789999999999999888 999999999999999999999998888   456777


Q ss_pred             HHHHHcCC
Q 020462          125 KLSKDVGR  132 (326)
Q Consensus       125 ~~L~~~g~  132 (326)
                      ++|.+.+.
T Consensus       195 ~~l~~~~~  202 (221)
T d1iknd_         195 QQLGQLTL  202 (221)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHcCC
Confidence            77777554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.4e-20  Score=160.54  Aligned_cols=122  Identities=20%  Similarity=0.204  Sum_probs=112.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .||++.++..++.++++.|++.+.+. ...|.+|+||||+|+.+|+.++++.|++.   .+.++|.+|.+|+||||+|+.
T Consensus       106 ~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~---~~~~in~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         106 VTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGL---GKSAVNWQDKQGWTPLFHALA  181 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT---TCCCSCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccccccccc---ccccccccccccCCchhhhcc
Confidence            48999999999999999999999987 77799999999999999999999999998   237899999999999999999


Q ss_pred             cCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCC
Q 020462           81 VRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRG  133 (326)
Q Consensus        81 ~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~  133 (326)
                      .|+.+++ ++|++ .|+|++.+|++|+||||+|...      +++++|+++|++
T Consensus       182 ~~~~~~v-~~Ll~~~gad~~~~d~~g~t~l~~A~~~------~~~~~Ll~~g~d  228 (229)
T d1ixva_         182 EGHGDAA-VLLVEKYGAEYDLVDNKGAKAEDVALNE------QVKKFFLNNVVD  228 (229)
T ss_dssp             TTCHHHH-HHHHHHHCCCSCCCCTTSCCTGGGCSCH------HHHHHHHHHCCC
T ss_pred             cccHHHH-HHHHHhcCCCCCCcCCCCCCHHHHHhhH------HHHHHHHHcCCC
Confidence            9999999 99886 5999999999999999999743      688999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=3.3e-20  Score=163.93  Aligned_cols=133  Identities=17%  Similarity=0.102  Sum_probs=114.6

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc----------------------
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL----------------------   59 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~----------------------   59 (326)
                      ||||.||+.|+.++|+.|+++|+|+ +.+|.+|+||||+|+.+|+.+++++|++....                      
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~  120 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD  120 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccc
Confidence            7899999999999999999999998 78899999999999999999999999876210                      


Q ss_pred             -------cc------------------------------------------------------------ccccccCCCCC
Q 020462           60 -------VR------------------------------------------------------------SLIIEGDVKGN   72 (326)
Q Consensus        60 -------~g------------------------------------------------------------~~in~~d~~G~   72 (326)
                             .|                                                            .+....+..|.
T Consensus       121 ~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  200 (291)
T d1s70b_         121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG  200 (291)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred             hhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCC
Confidence                   00                                                            11233567788


Q ss_pred             cHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           73 TPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        73 TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      ||||.|+..|+.+.+ ++|++.|+|++.+|.+|+||||+|+..   +..+++++|+++|+++...+.
T Consensus       201 t~L~~a~~~~~~~~~-~~Ll~~g~din~~~~~g~TpL~~A~~~---g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         201 TALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAAAHW---GKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             CHHHHHHHHTCHHHH-HHHHTTTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCT
T ss_pred             ChhhHHHHcCChhhh-cccccceecccccccCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCcCC
Confidence            999999999999998 999999999999999999999999999   556899999999998775443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=2.3e-20  Score=163.31  Aligned_cols=124  Identities=16%  Similarity=0.109  Sum_probs=97.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcC-----------------------
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENN-----------------------   57 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~-----------------------   57 (326)
                      +||||+|++.|+.+++++|+++|+|+ +.+|.+|+||||+|+..++.++++.+....                       
T Consensus        75 ~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (277)
T d2fo1e1          75 NTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN  153 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred             Ceeecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhc
Confidence            59999999999999999999999998 778999999999999999987776654420                       


Q ss_pred             ------------------------------------c------------------cccccccccCCCCCcHHHHHHhcCC
Q 020462           58 ------------------------------------P------------------LVRSLIIEGDVKGNTPLHVLAAVRP   83 (326)
Q Consensus        58 ------------------------------------~------------------~~g~~in~~d~~G~TpLH~Aa~~~~   83 (326)
                                                          +                  ..+.+.+.+|..|+||||+|++.|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (277)
T d2fo1e1         154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR  233 (277)
T ss_dssp             CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence                                                0                  0345566677777788888888777


Q ss_pred             chHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHH
Q 020462           84 DEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKD  129 (326)
Q Consensus        84 ~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~  129 (326)
                      .+++ ++|+++|+|++.+|.+|+||||+|++.   +..+++++|.+
T Consensus       234 ~~iv-~~Ll~~gadin~~d~~G~T~L~~A~~~---~~~~iv~lL~~  275 (277)
T d2fo1e1         234 IEVV-MYLIQQGASVEAVDATDHTARQLAQAN---NHHNIVDIFDR  275 (277)
T ss_dssp             HHHH-HHHHHTTCCSSCCCSSSCCHHHHHHHT---TCHHHHHHHHT
T ss_pred             HHHH-HHHHHCcCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHH
Confidence            7777 777777888888888888888888777   44567776654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.1e-20  Score=171.26  Aligned_cols=82  Identities=24%  Similarity=0.262  Sum_probs=77.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      .||||+||..|+.++|+.|+++|+++ +.+|.+|+||||+|+.+|+.+++++|+++    |+++|.+|.+|+||||+|+.
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHHH
Confidence            59999999999999999999999998 77899999999999999999999999999    99999999999999999998


Q ss_pred             cCCchHH
Q 020462           81 VRPDEFD   87 (326)
Q Consensus        81 ~~~~~~v   87 (326)
                      .|+.+.+
T Consensus        76 ~g~~~~~   82 (408)
T d1n11a_          76 IGHTNMV   82 (408)
T ss_dssp             HTCHHHH
T ss_pred             cCCHHHH
Confidence            8776654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=1.2e-20  Score=165.17  Aligned_cols=127  Identities=14%  Similarity=0.054  Sum_probs=106.3

Q ss_pred             CcHHHHHHHcCcHHHHHHH--------HHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCC
Q 020462            1 MTALHLAADRGYVGIVKAI--------ISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGN   72 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~L--------l~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~   72 (326)
                      +||||+||..|+.++++.|        ++.|+|+ +.+|.+|+||||+|+.+|+.+++++|++.    |+++|.+|.+|+
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~----Gad~n~~~~~g~  108 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKA----GADPTIYNKSER  108 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTCC
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeecccccccccccccccccc----cccccccccccc
Confidence            6999999999999988776        4568888 77899999999999999999999999999    999999999999


Q ss_pred             cHHHHHHhcCCchHH-----------------------------------------------------------------
Q 020462           73 TPLHVLAAVRPDEFD-----------------------------------------------------------------   87 (326)
Q Consensus        73 TpLH~Aa~~~~~~~v-----------------------------------------------------------------   87 (326)
                      ||||+|...++.+..                                                                 
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            999998776654333                                                                 


Q ss_pred             ---------------HHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462           88 ---------------VRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus        88 ---------------~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                                     ..++...+.+.+.+|..|+||||+|+..   +..+++++|++.|+++.
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~---g~~~iv~~Ll~~gadin  248 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE---GRIEVVMYLIQQGASVE  248 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCSS
T ss_pred             CccccccccccccccccccccccccccccCCCCCCHHHHHHHc---CCHHHHHHHHHCcCCCC
Confidence                           0123344567777889999999999988   45689999999998765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-19  Score=146.68  Aligned_cols=119  Identities=14%  Similarity=0.209  Sum_probs=109.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+ .|+.++++.|++++.++ +..+.+|.+|++.++..++.++++.+++.    |.++|.+|.+|+||||+|++
T Consensus        37 ~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~----~~~~n~~~~~~~t~L~~A~~  110 (156)
T d1bd8a_          37 KTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEH----GADVNVPDGTGALPIHLAVQ  110 (156)
T ss_dssp             CCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHH
T ss_pred             Cccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccc----ccccccccCCCCeeeccccc
Confidence            59999987 48899999999999998 77789999999999999999999999999    99999999999999999999


Q ss_pred             cCCchHHHHHHhhcccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHc
Q 020462           81 VRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDV  130 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~  130 (326)
                      .|+.+++ ++|+ .|+|++.+|.+|+||||+|+..   +..+++++|+++
T Consensus       111 ~~~~~i~-~~L~-~~~~~~~~d~~G~TpL~~A~~~---g~~~iv~~Ll~h  155 (156)
T d1bd8a_         111 EGHTAVV-SFLA-AESDLHRRDARGLTPLELALQR---GAQDLVDILQGH  155 (156)
T ss_dssp             HTCHHHH-HHHH-TTSCTTCCCTTSCCHHHHHHHS---CCHHHHHHHHTT
T ss_pred             ccccccc-cccc-ccccccccCCCCCCHHHHHHHc---CCHHHHHHHHhh
Confidence            9999998 8887 6899999999999999999999   456888988764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.6e-19  Score=157.15  Aligned_cols=128  Identities=19%  Similarity=0.190  Sum_probs=113.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCccHHHHHHHcC----ChhHHHHHHhcCccccccccccCCCCCcHH
Q 020462            1 MTALHLAADRGYVGIVKAIISK-NLECYELVDNRGWNFLHYAMVSF----YVEELGNLLENNPLVRSLIIEGDVKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~-~~d~~~~~d~~G~tpLh~A~~~g----~~~vv~~Ll~~~~~~g~~in~~d~~G~TpL   75 (326)
                      +||||+|++.|+.++++.|+++ +.++ +..|..|.++++.+...+    ..++++.|++.    |+++|.+|.+|+|||
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~----ga~~n~~~~~g~t~L  223 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKTPL  223 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT----TCCSSCCCTTSCCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHC----CCCCCccCCCCCCcc
Confidence            5899999999999999999976 6666 778999999888765543    34689999999    999999999999999


Q ss_pred             HHHHhcCCchHHHHHHhh-cccCcccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCC
Q 020462           76 HVLAAVRPDEFDVRMIRK-MQANFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSD  137 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~-~g~d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~  137 (326)
                      |.|++.|+.+++ ++|++ .|+|++.+|.+|.||||+|++.   +..+++++|+++|+++...
T Consensus       224 ~~a~~~~~~~~v-~~lL~~~g~din~~d~~G~TpL~~A~~~---~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         224 ILAVEKKHLGLV-QRLLEQEHIEINDTDSDGKTALLLAVEL---KLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHTTCHHHH-HHHHHSSSCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHSSCSCCS
T ss_pred             chhhhcCcHHHH-HHHHHcCCCCCcCCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCcc
Confidence            999999999998 88886 5999999999999999999999   5679999999999998743

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=8e-20  Score=140.70  Aligned_cols=98  Identities=15%  Similarity=0.083  Sum_probs=90.7

Q ss_pred             ccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhh
Q 020462           35 WNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLN  114 (326)
Q Consensus        35 ~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~  114 (326)
                      .|||++|+++|+.++++.|++.    |+++|.+|.+|+||||+|+..|+.+.+ ++|+++|+|++.+|.+|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~----g~d~n~~~~~g~t~lh~A~~~~~~~~~-~~ll~~g~din~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEIL-EFLLLKGADINAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT----TCCCCCCSSSSCCTTHHHHHHSTTTHH-HHHHHSSCTTTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh----hhccccccccccccccccccccccccc-cccccccceeeecccccccchhhhhh
Confidence            5899999999999999999999    999999999999999999999999999 99999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHcCCCCCCCCcc
Q 020462          115 GYPELKEEIQKLSKDVGRGQYSDGVI  140 (326)
Q Consensus       115 ~~~~~~~~i~~~L~~~g~~~~~~~~~  140 (326)
                      .+   ..+++++|++.|+++...+..
T Consensus        78 ~~---~~~~v~~Ll~~Gad~~~~d~~  100 (118)
T d1myoa_          78 EG---HVSCVKLLLSKGADKTVKGPD  100 (118)
T ss_dssp             TT---CCHHHHHHHTTCCCSSSSSSS
T ss_pred             cC---chhhhhhhhcccccceeeCCC
Confidence            94   458999999999888754443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.4e-19  Score=145.95  Aligned_cols=90  Identities=23%  Similarity=0.339  Sum_probs=84.7

Q ss_pred             CcHHHHHHHc---CcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHH
Q 020462            1 MTALHLAADR---GYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHV   77 (326)
Q Consensus         1 ~TpLh~Aa~~---G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~   77 (326)
                      +||||+|++.   |+.+++++|+++|+++ +.+|.+|+||||+|+.+|+.+++++|++.    |++++.+|.+|+||||+
T Consensus        46 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~----gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          46 ETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRG----KASIEIANESGETPLDI  120 (154)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccccccccccccccccccc----CccccccCCCCCCHHHH
Confidence            5899999974   7899999999999998 78899999999999999999999999999    99999999999999999


Q ss_pred             HHhcCCchHHHHHHhhccc
Q 020462           78 LAAVRPDEFDVRMIRKMQA   96 (326)
Q Consensus        78 Aa~~~~~~~v~~lLl~~g~   96 (326)
                      |++.|+.+++ ++|++.+.
T Consensus       121 A~~~~~~~i~-~~L~~~~~  138 (154)
T d1dcqa1         121 AKRLKHEHCE-ELLTQALS  138 (154)
T ss_dssp             HHHTTCHHHH-HHHHHHHT
T ss_pred             HHHcCCHHHH-HHHHHhCC
Confidence            9999999999 99988654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-19  Score=154.54  Aligned_cols=129  Identities=17%  Similarity=0.114  Sum_probs=101.5

Q ss_pred             CcHHHHHHHcCcHHH----HHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHH
Q 020462            1 MTALHLAADRGYVGI----VKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLH   76 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~i----v~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH   76 (326)
                      +||||+|+..|+.++    ++.+...+.++ +.+|.+|+||||+|+..|+.+++++|++.    |++++.+|.+|.||||
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~----g~d~~~~d~~g~t~l~   77 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGA----GCDPELRDFRGNTPLH   77 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSC----CCCSCCCCTTCCCHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccc----cccccccccccccccc
Confidence            599999999999655    45555677777 78899999999999999999999999998    9999999999988888


Q ss_pred             HHHhcCCchHHHHH---------------------------------------HhhcccCccccc-ccCcCHHHhHhhCC
Q 020462           77 VLAAVRPDEFDVRM---------------------------------------IRKMQANFDAVN-KQNVSVTNILLNGY  116 (326)
Q Consensus        77 ~Aa~~~~~~~v~~l---------------------------------------Ll~~g~d~~~~n-~~g~TpL~~A~~~~  116 (326)
                      .++..++.+.+ +.                                       |.+.|.+.+..+ .+|.||||+|+.. 
T Consensus        78 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~-  155 (221)
T d1iknd_          78 LACEQGCLASV-GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL-  155 (221)
T ss_dssp             HHHHHTCHHHH-HHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-
T ss_pred             ccccccccccc-chhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccc-
Confidence            88877766655 43                                       444455555544 5799999999998 


Q ss_pred             CchHHHHHHHHHHcCCCCCCCC
Q 020462          117 PELKEEIQKLSKDVGRGQYSDG  138 (326)
Q Consensus       117 ~~~~~~i~~~L~~~g~~~~~~~  138 (326)
                        +..+++++|++.|+++...+
T Consensus       156 --g~~~~v~~Ll~~gad~~~~~  175 (221)
T d1iknd_         156 --QNPDLVSLLLKCGADVNRVT  175 (221)
T ss_dssp             --TCHHHHHHHHTTTCCSCCCC
T ss_pred             --ccHHHHHHHHhcCCcccccC
Confidence              55689999999998876443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.79  E-value=2.3e-19  Score=158.42  Aligned_cols=80  Identities=28%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             ccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHH
Q 020462           30 VDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVT  109 (326)
Q Consensus        30 ~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL  109 (326)
                      .+..|.||||.|+..|+.++++.|++.    |+++|.+|.+|+||||+|+..|+.+++ ++|+++|+|++.+|++|+|||
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~----g~din~~~~~g~TpL~~A~~~g~~~iv-~lLl~~Gadv~~~d~~G~TaL  269 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQA----RYDVNIKDYDGWTPLHAAAHWGKEEAC-RILVENLCDMEAVNKVGQTAF  269 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCTT
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccc----eecccccccCCCCHHHHHHHcCCHHHH-HHHHHCCCCCCCcCCCCCCHH
Confidence            345677888888888888888888888    999999999999999999999999999 999999999999999999999


Q ss_pred             HhHhh
Q 020462          110 NILLN  114 (326)
Q Consensus       110 ~~A~~  114 (326)
                      |+|.+
T Consensus       270 ~~A~e  274 (291)
T d1s70b_         270 DVADE  274 (291)
T ss_dssp             TSCCS
T ss_pred             HHHHH
Confidence            99975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.79  E-value=3.9e-21  Score=175.46  Aligned_cols=125  Identities=8%  Similarity=-0.005  Sum_probs=105.1

Q ss_pred             CcHHHHHHHcCcHHHHHH---HHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccC--CCCCcHH
Q 020462            1 MTALHLAADRGYVGIVKA---IISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGD--VKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~---Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d--~~G~TpL   75 (326)
                      +||||+||++||.++++.   |++.++++ +.+|.+|+||||+|+++|+.++|++|++.    |++++.+|  .+|+|||
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~----g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCEL----APTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHS----CTTTHHHHHSHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHc----CCCccccccccCCCChh
Confidence            489999999999877665   78899998 77899999999999999999999999999    99998876  4699999


Q ss_pred             HHHHhcCCchHHHHHHhhcccCc---ccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCC
Q 020462           76 HVLAAVRPDEFDVRMIRKMQANF---DAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQ  134 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~~g~d~---~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~  134 (326)
                      |+|++.|+.+++ ++|++.|++.   +..+.+|.||++.|+.++   +.+++++|++.|++.
T Consensus       166 ~~Aa~~g~~~iv-~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g---~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         166 RLAAENGHLHVL-NRLCELAPTEATAMIQAENYYAFRWAAVGRG---HHNVINFLLDCPVML  223 (346)
T ss_dssp             HHHHHTTCHHHH-HHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC---CHHHHHHHTTSHHHH
T ss_pred             HHHHHHhhHHHH-HHHHHcCCcccccccccCCCcchhhHHhhcC---HHHHHHHHHhCCCCc
Confidence            999999999999 9999998765   445567888999998884   458999999877543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-18  Score=135.18  Aligned_cols=93  Identities=11%  Similarity=0.088  Sum_probs=87.8

Q ss_pred             cHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHhHhhC
Q 020462           36 NFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNILLNG  115 (326)
Q Consensus        36 tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~A~~~  115 (326)
                      ++||.|+..|+.++++.|++.    |+++|.+|.+|+||||+|+..++.+++ ++|++.|++++.+|.+|+||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~----g~d~n~~d~~g~t~Lh~A~~~~~~~~~-~~ll~~g~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIV-KFLVQFGVNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHHHHHHTCHHHH-HHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc----CCCcccccccccccccccccccccccc-ccccccccccccccccCcccccccchh
Confidence            579999999999999999999    999999999999999999999999999 999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHcCCCCCC
Q 020462          116 YPELKEEIQKLSKDVGRGQYS  136 (326)
Q Consensus       116 ~~~~~~~i~~~L~~~g~~~~~  136 (326)
                         ++.+++++|+++|+++..
T Consensus        78 ---g~~~~v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          78 ---NNVQVCKFLVESGAAVFA   95 (130)
T ss_dssp             ---TCHHHHHHHHHTTCCTTC
T ss_pred             ---hHHHHHHHHHHcCCCccc
Confidence               556899999999988763

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=4e-18  Score=142.93  Aligned_cols=119  Identities=21%  Similarity=0.151  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCcc---------------------------------
Q 020462           13 VGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPL---------------------------------   59 (326)
Q Consensus        13 ~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~---------------------------------   59 (326)
                      .|+|+.|+++|+|++...|.+|+||||+||.+|+.|++++|++....                                 
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            48999999999998555799999999999999999999999985100                                 


Q ss_pred             ------------------------------ccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHH
Q 020462           60 ------------------------------VRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVT  109 (326)
Q Consensus        60 ------------------------------~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL  109 (326)
                                                    .+.+++.+|..|+||||.++..+..+.+ +.+++.+.+++.+|.+|.|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~-~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAV-NILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTCCCHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceee-eeecccccccccccccccccc
Confidence                                          4677888999999999999999999998 999999999999999999999


Q ss_pred             HhHhhCCCchHHHHHHHHHHcCCCCC
Q 020462          110 NILLNGYPELKEEIQKLSKDVGRGQY  135 (326)
Q Consensus       110 ~~A~~~~~~~~~~i~~~L~~~g~~~~  135 (326)
                      |+|+..   +..++++.|++.|+++.
T Consensus       161 ~~A~~~---g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         161 FLAARE---GSYEASKALLDNFANRE  183 (209)
T ss_dssp             HHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             chhccc---cHHHHHHHHHHCCCCCC
Confidence            999999   56689999999998775

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-17  Score=128.86  Aligned_cols=86  Identities=14%  Similarity=0.164  Sum_probs=78.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCc-cHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGW-NFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLA   79 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~-tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa   79 (326)
                      +||||.| ..|+.++++.|+++|+++ +.+|..|. ||||+|+++|+.+++++|++.    |+++|.+|.+|+||||+|+
T Consensus        37 ~t~l~~a-~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~----ga~~~~~d~~G~T~l~~A~  110 (125)
T d1bi7b_          37 RRPIQVM-MMGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRA----GARLDVRDAWGRLPVDLAE  110 (125)
T ss_dssp             CCTTTSS-CTTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTCCCHHHHHH
T ss_pred             ccccccc-cccccccccccccccccc-cccccccccccccccccccccccccccccc----ccccccccCCCCCHHHHHH
Confidence            5899866 479999999999999998 66677765 699999999999999999999    9999999999999999999


Q ss_pred             hcCCchHHHHHHhh
Q 020462           80 AVRPDEFDVRMIRK   93 (326)
Q Consensus        80 ~~~~~~~v~~lLl~   93 (326)
                      +.|+.+++ ++|++
T Consensus       111 ~~g~~~~v-~~Lls  123 (125)
T d1bi7b_         111 ELGHRDVA-RYLRA  123 (125)
T ss_dssp             HHTCHHHH-HHHSS
T ss_pred             HcCCHHHH-HHHHh
Confidence            99999999 98875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.2e-16  Score=140.63  Aligned_cols=110  Identities=20%  Similarity=0.134  Sum_probs=85.5

Q ss_pred             CCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCc------hHHHHHHh----
Q 020462           23 NLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPD------EFDVRMIR----   92 (326)
Q Consensus        23 ~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~------~~v~~lLl----   92 (326)
                      +.|++...|.+|+||||+|+..|+.+++++|++.    |++++.+|.+|+||||.|+..++.      +.+++++.    
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~----gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~  171 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  171 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhh
Confidence            4455334589999999999999999999999999    999999999999999999975531      11112211    


Q ss_pred             --------------------------------------hccc-------------------------------------C
Q 020462           93 --------------------------------------KMQA-------------------------------------N   97 (326)
Q Consensus        93 --------------------------------------~~g~-------------------------------------d   97 (326)
                                                            ..+.                                     .
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence                                                  1111                                     1


Q ss_pred             cccccccCcCHHHhHhhCCCchHHHHHHHHHHcCCCCCCCCc
Q 020462           98 FDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVGRGQYSDGV  139 (326)
Q Consensus        98 ~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g~~~~~~~~  139 (326)
                      +|.+|.+|+||||+|++.   ++.+++++|++.|+++...+.
T Consensus       252 in~~D~~G~TpLh~A~~~---g~~~iv~~Ll~~GAd~~~~n~  290 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARL---GNISIVDALLDYGADPFIANK  290 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHH---CCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccCCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCCCC
Confidence            578899999999999999   556899999999998874443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.3e-16  Score=136.97  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             cCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHH
Q 020462           10 RGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVR   89 (326)
Q Consensus        10 ~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~   89 (326)
                      .+..++++.|+++|+++ +.+|..|+||||+|+..|+.+++++|++.   .|.++|.+|.+|+||||+|++.|+.+++ +
T Consensus       196 ~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~---~g~din~~d~~G~TpL~~A~~~~~~eiv-~  270 (285)
T d1wdya_         196 SDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIA-E  270 (285)
T ss_dssp             TTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHH-H
T ss_pred             hHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHc---CCCCCcCCCCCCCCHHHHHHHcCCHHHH-H
Confidence            34567999999999998 77899999999999999999999999975   3899999999999999999999999999 9


Q ss_pred             HHhhcccCcccccc
Q 020462           90 MIRKMQANFDAVNK  103 (326)
Q Consensus        90 lLl~~g~d~~~~n~  103 (326)
                      +|+++|+|+|.+|.
T Consensus       271 ~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         271 LLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHSSCSCCSSC
T ss_pred             HHHHCCCCCCcccC
Confidence            99999999999874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.60  E-value=3.1e-17  Score=149.24  Aligned_cols=103  Identities=9%  Similarity=0.003  Sum_probs=87.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCccccccc--CCCccHHHHHHHcCChhHHHHHHhcCcccccc---ccccCCCCCcHH
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVD--NRGWNFLHYAMVSFYVEELGNLLENNPLVRSL---IIEGDVKGNTPL   75 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d--~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~---in~~d~~G~TpL   75 (326)
                      +||||+||++||.++|++|+++|+++ +..|  .+|+||||+|+.+|+.+++++|++.    |+.   .+.++.+|.||+
T Consensus       127 ~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~----~~~~~~~~~~~~~~~t~l  201 (346)
T d2ajaa1         127 YQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCEL----APTEATAMIQAENYYAFR  201 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHS----CGGGHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHc----CCcccccccccCCCcchh
Confidence            48999999999999999999999997 4444  5699999999999999999999998    654   345566778899


Q ss_pred             HHHHhcCCchHHHHHHhhcccCcccccccCcCHH
Q 020462           76 HVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVT  109 (326)
Q Consensus        76 H~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL  109 (326)
                      |.|+..|+.+++ ++|++.|++++..+..+.++.
T Consensus       202 ~~A~~~g~~~iv-~~Ll~~ga~~~~~~~~~~~~~  234 (346)
T d2ajaa1         202 WAAVGRGHHNVI-NFLLDCPVMLAYAEIHEFEYG  234 (346)
T ss_dssp             HHHSTTCCHHHH-HHHTTSHHHHHHHHHCTTTTT
T ss_pred             hHHhhcCHHHHH-HHHHhCCCCcchHHHHHHHcC
Confidence            999999999999 999999998876655544433

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.7e-15  Score=118.46  Aligned_cols=84  Identities=18%  Similarity=0.219  Sum_probs=70.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhc
Q 020462            2 TALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAV   81 (326)
Q Consensus         2 TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~   81 (326)
                      +++|.++...+.+.++.+++++.+. ..+|.+|+||||+|+..|+.+++++|++.    |+++|.+|.+|+||||+|+..
T Consensus        69 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~----gad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          69 TPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKY----GADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeecccc----ccCCcccCCCCCCHHHHHHHc
Confidence            3445555555555566666666666 66799999999999999999999999999    999999999999999999999


Q ss_pred             CCchHHHHHH
Q 020462           82 RPDEFDVRMI   91 (326)
Q Consensus        82 ~~~~~v~~lL   91 (326)
                      |+.+++ ++|
T Consensus       144 g~~eiv-~lL  152 (153)
T d1awcb_         144 GNEDLA-EIL  152 (153)
T ss_dssp             TCHHHH-HHH
T ss_pred             CCHHHH-HhC
Confidence            999998 876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=120.58  Aligned_cols=94  Identities=15%  Similarity=0.071  Sum_probs=81.5

Q ss_pred             CCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHhcCCchHHHHHHhhcccCcccccccCcCHHHh
Q 020462           32 NRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAAVRPDEFDVRMIRKMQANFDAVNKQNVSVTNI  111 (326)
Q Consensus        32 ~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~~~~~~~v~~lLl~~g~d~~~~n~~g~TpL~~  111 (326)
                      ++|+||||+|+.+|+.++++.|++.....|+++|.+|.+|+||||+|+..|+.+++ ++|+++|++.+..+.+|.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv-~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV-RLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccc-ccccccccccccccccccccccc
Confidence            46999999999999999999998632224899999999999999999999999999 99999999999999999999999


Q ss_pred             HhhCCCchHHHHHHHHHH
Q 020462          112 LLNGYPELKEEIQKLSKD  129 (326)
Q Consensus       112 A~~~~~~~~~~i~~~L~~  129 (326)
                      |....+   .+.++....
T Consensus        80 a~~~~~---~~~~~~~~~   94 (228)
T d1k1aa_          80 ACEHRS---PTCLRALLD   94 (228)
T ss_dssp             HHHTTC---HHHHHHHHH
T ss_pred             cccccc---ccchhhhhh
Confidence            998844   345555444

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.5e-14  Score=111.88  Aligned_cols=121  Identities=23%  Similarity=0.277  Sum_probs=112.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCcccccccCCCccHHHHHHHcCChhHHHHHHhcCccccccccccCCCCCcHHHHHHh
Q 020462            1 MTALHLAADRGYVGIVKAIISKNLECYELVDNRGWNFLHYAMVSFYVEELGNLLENNPLVRSLIIEGDVKGNTPLHVLAA   80 (326)
Q Consensus         1 ~TpLh~Aa~~G~~~iv~~Ll~~~~d~~~~~d~~G~tpLh~A~~~g~~~vv~~Ll~~~~~~g~~in~~d~~G~TpLH~Aa~   80 (326)
                      +||||+|+ .|+.|+++.|+++++++ +.++.+|.++++.++.+++.+.++.|++.    +.+++..|..|.+|||+|+.
T Consensus        35 ~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~l~~a~~  108 (156)
T d1ihba_          35 RTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEF----QADVNIEDNEGNLPLHLAAK  108 (156)
T ss_dssp             CCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccccc-ccccccccccccccccc-ccccccCcccccccccccccccccccccc----cccccccccccccccccccc
Confidence            69999886 79999999999999998 78899999999999999999999999998    89999999999999999999


Q ss_pred             cCCchHHHHHHhhccc-CcccccccCcCHHHhHhhCCCchHHHHHHHHHHcC
Q 020462           81 VRPDEFDVRMIRKMQA-NFDAVNKQNVSVTNILLNGYPELKEEIQKLSKDVG  131 (326)
Q Consensus        81 ~~~~~~v~~lLl~~g~-d~~~~n~~g~TpL~~A~~~~~~~~~~i~~~L~~~g  131 (326)
                      .++.+.+ ++|++++. +.+.+|.+|+||||+|++.   ++.+++++|+++|
T Consensus       109 ~~~~~~~-~~Ll~~~~~~~~~~d~~g~TpL~~A~~~---~~~~iv~~Ll~~G  156 (156)
T d1ihba_         109 EGHLRVV-EFLVKHTASNVGHRNHKGDTACDLARLY---GRNEVVSLMQANG  156 (156)
T ss_dssp             TTCHHHH-HHHHHHSCCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTC
T ss_pred             ccccccc-ccccccccccccccCCCCCCHHHHHHHc---CCHHHHHHHHhcC
Confidence            9999999 99888875 8999999999999999999   5568999999876