Citrus Sinensis ID: 020504

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MVVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGGGRRHHGKRHHRSRSSGTKANDV
ccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccEEEEEEEccccccEEEccEEEEEEEEEEEEEEccccccEEEEEEEEccccccccccEEEEEEEccccccccEEEEEEEccccccccccEEEEcccccccccEEEEEEEccccEEEEEEcccccccccccccEEEEEEEccccccccccEEEEccccccEEEEEEcEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHcccccccEEcccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEcccccccccccEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEEcccccccEEEEEEccccEEEEEccHHccccccccccEEEEEEEccccccccccEEEEccccccEEEEEEcEEEccEEcccccccccccccccccccHHHHcccHHHHHHHHHHHHHcEEEEccccccccccccccccccHHHHHHHcccccEEEcccccccccccccccccccccccc
MVVSYEGCFLLVFSLLAVVASglyrnlpivpfdegyshlfghdnlvvhtdgksvhlsldertgsgfvshdlylhgffsasiklpadytAGVVVAFYMsngdmfeknhdeidfeflgnirgkdwriqtniygngstsigreerynlwfdpsddfhqysilwTDSQIMEFKrtasmggdfpakpmsLYATIwdgsdwatnggkyrvnykyapyvtefsdfvlhgcsfdpieqtsskcditesskvsiptgvspsqriKMENFRRKhmtysycydqirykvppfecvinpleaerlkvhdpvtfgggrrhhgkrhhrsrssgtkandv
MVVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGnirgkdwriqtniygngstsigREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTsskcditesskvsiptgvspsqrikMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVtfgggrrhhgkrhhrsrssgtkandv
MVVSYEGCfllvfsllavvasGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFgggrrhhgkrhhrsrssgTKANDV
**VSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIE*****************************NFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTF************************
******GCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSS*****************PSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKV******************************
MVVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGG**********************
*VVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQ***********KVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFG***********************
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGGGRRHHGKRHHRSRSSGTKANDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
Q38909332 Probable xyloglucan endot yes no 0.972 0.951 0.654 1e-126
Q8LDS2333 Probable xyloglucan endot no no 0.96 0.936 0.675 1e-124
Q38908343 Probable xyloglucan endot no no 0.910 0.862 0.559 4e-94
Q8L7H3357 Probable xyloglucan endot no no 0.873 0.795 0.522 8e-85
Q8LC45310 Probable xyloglucan endot no no 0.775 0.812 0.453 1e-62
Q9SV60292 Xyloglucan endotransgluco no no 0.84 0.934 0.419 4e-56
Q9SV61292 Putative xyloglucan endot no no 0.753 0.839 0.414 4e-52
Q9LJR7290 Xyloglucan endotransgluco no no 0.76 0.851 0.379 1e-47
Q9XIW1293 Probable xyloglucan endot no no 0.812 0.901 0.379 1e-46
Q8L9A9305 Probable xyloglucan endot no no 0.870 0.927 0.352 1e-45
>sp|Q38909|XTH28_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1 Back     alignment and function desciption
 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/327 (65%), Positives = 259/327 (79%), Gaps = 11/327 (3%)

Query: 9   FLLVFSLLAVVASGL-YRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFV 67
           FL+  SL   + SG   + LP++ FDEGY+ LFG  NL+VH DGKSV L+LDERTGSGFV
Sbjct: 7   FLVFMSLFTSLVSGFALQKLPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFV 66

Query: 68  SHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQT 127
           S+D+YLHGFFS+SIKLPADY+AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG++WRIQT
Sbjct: 67  SNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQT 126

Query: 128 NIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIM---------EFKRTASMGGDF 178
           NIYGNGST +GREERYNLWFDP++DFHQYSILW+ S I+         E KRTASMGGDF
Sbjct: 127 NIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDF 186

Query: 179 PAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT 238
           PAKPMSLY+TIWDGS WAT+GGKY VNYKYAPYV++F+D +LHGC+ DP E+  S C   
Sbjct: 187 PAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPS-CKDE 245

Query: 239 ESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDP 298
               + + + ++ SQR KME FR+KHMTYSYCYD +RYKV   ECV+NP EA+RL+V+DP
Sbjct: 246 AVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKRLRVYDP 305

Query: 299 VTFGGGRRHHGKRHHRSRSSGTKANDV 325
           VTFGG    H +  HRSRS   +   +
Sbjct: 306 VTFGGIPHGHRRGKHRSRSRLARTESI 332
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q8LDS2|XTH27_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2 Back     alignment and function description
>sp|Q38908|XTH30_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7H3|XTH29_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1 Back     alignment and function description
>sp|Q8LC45|XTH33_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2 Back     alignment and function description
>sp|Q9SV60|XTH2_ARATH Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SV61|XTH1_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=3 SV=2 Back     alignment and function description
>sp|Q9LJR7|XTH3_ARATH Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1 Back     alignment and function description
>sp|Q9XIW1|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1 Back     alignment and function description
>sp|Q8L9A9|XTH8_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
255573236338 Xyloglucan endotransglucosylase/hydrolas 0.984 0.946 0.765 1e-141
224099595336 predicted protein [Populus trichocarpa] 0.963 0.931 0.788 1e-137
356512283338 PREDICTED: probable xyloglucan endotrans 0.901 0.866 0.763 1e-137
449504255333 PREDICTED: probable xyloglucan endotrans 0.935 0.912 0.751 1e-137
124109193336 xyloglucan endotransglycosylase/hydrolas 0.898 0.869 0.787 1e-137
118482018336 unknown [Populus trichocarpa] 0.963 0.931 0.788 1e-136
224111404336 predicted protein [Populus trichocarpa] 0.92 0.889 0.770 1e-136
449450129333 PREDICTED: probable xyloglucan endotrans 0.935 0.912 0.748 1e-136
187373000336 xyloglucan endotransglucosylase/hydrolas 0.895 0.866 0.779 1e-136
255637480333 unknown [Glycine max] 0.901 0.879 0.760 1e-135
>gi|255573236|ref|XP_002527547.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] gi|223533097|gb|EEF34856.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/337 (76%), Positives = 283/337 (83%), Gaps = 17/337 (5%)

Query: 1   MVVSY-EGCFLLV----FSLLAVVASG-LYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSV 54
           MVVSY   C  L+    F LLAV  SG     LPI+PFDEGY+HLFG DNLV+H DGK+V
Sbjct: 1   MVVSYLNSCLFLLNSSLFVLLAVSVSGSQTTTLPIIPFDEGYAHLFGDDNLVIHKDGKTV 60

Query: 55  HLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEF 114
           +L L+ERTGSGFVS DLYLHG+FSASIKLPADYTAGVVVAFYMSNGD+FEKNHDEIDFEF
Sbjct: 61  YLLLNERTGSGFVSQDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDIFEKNHDEIDFEF 120

Query: 115 LGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIM-------- 166
           LGNIRGKDWRIQTNIYGNGSTSIGREERY+LWFDPSDDFHQYSILWTDSQI+        
Sbjct: 121 LGNIRGKDWRIQTNIYGNGSTSIGREERYSLWFDPSDDFHQYSILWTDSQIIFYVDNVPI 180

Query: 167 -EFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSF 225
            E KRT SMGGDFP+KPMSLYATIWDGSDWATNGGKYRVNY+YAPYVT+FSDFVLHGC+ 
Sbjct: 181 REVKRTVSMGGDFPSKPMSLYATIWDGSDWATNGGKYRVNYRYAPYVTQFSDFVLHGCAV 240

Query: 226 DPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVI 285
           DPIEQ  SKCD  +SS+ +IPTGV+P Q+IKMENFR K+MTYSYCYD++RYK PP EC++
Sbjct: 241 DPIEQI-SKCDAAQSSQ-AIPTGVTPLQKIKMENFRTKYMTYSYCYDRVRYKNPPSECLV 298

Query: 286 NPLEAERLKVHDPVTFGGGRRHHGKRHHRSRSSGTKA 322
           NP EA RLK  DPVTFGG RRH GKR  RSRS    A
Sbjct: 299 NPQEAARLKSFDPVTFGGARRHRGKRQRRSRSGHNDA 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099595|ref|XP_002311545.1| predicted protein [Populus trichocarpa] gi|222851365|gb|EEE88912.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512283|ref|XP_003524850.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Glycine max] Back     alignment and taxonomy information
>gi|449504255|ref|XP_004162296.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|124109193|gb|ABM91072.1| xyloglucan endotransglycosylase/hydrolase precursor XTH-39 [Populus tremula] Back     alignment and taxonomy information
>gi|118482018|gb|ABK92940.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111404|ref|XP_002315842.1| predicted protein [Populus trichocarpa] gi|222864882|gb|EEF02013.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450129|ref|XP_004142816.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|187373000|gb|ACD03234.1| xyloglucan endotransglucosylase/hydrolase 10 [Malus x domestica] Back     alignment and taxonomy information
>gi|255637480|gb|ACU19067.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
TAIR|locus:2006857332 XTH28 "xyloglucan endotransglu 0.849 0.831 0.699 5.9e-112
TAIR|locus:2059728333 EXGT-A3 "endoxyloglucan transf 0.849 0.828 0.706 4.8e-110
TAIR|locus:2031750343 XTH30 "xyloglucan endotransglu 0.824 0.781 0.584 2.4e-85
TAIR|locus:2117189357 XTH29 "xyloglucan endotransglu 0.621 0.565 0.608 3.5e-68
TAIR|locus:2194554310 XTH33 "xyloglucan:xyloglucosyl 0.621 0.651 0.474 4.9e-53
TAIR|locus:2123201292 XTH2 "xyloglucan endotransgluc 0.763 0.849 0.426 1.3e-52
TAIR|locus:2123281292 XTH1 "xyloglucan endotransgluc 0.750 0.835 0.428 4.6e-50
TAIR|locus:2086959290 XTH3 "xyloglucan endotransgluc 0.753 0.844 0.387 5.4e-47
TAIR|locus:2075919293 XTH31 "XYLOGLUCAN ENDOTRANSGLU 0.769 0.853 0.393 1e-45
TAIR|locus:2159118293 XTH5 "xyloglucan endotransgluc 0.750 0.832 0.380 7.1e-45
TAIR|locus:2006857 XTH28 "xyloglucan endotransglucosylase/hydrolase 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 200/286 (69%), Positives = 240/286 (83%)

Query:    25 RNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLP 84
             + LP++ FDEGY+ LFG  NL+VH DGKSV L+LDERTGSGFVS+D+YLHGFFS+SIKLP
Sbjct:    24 QKLPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLP 83

Query:    85 ADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYN 144
             ADY+AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG++WRIQTNIYGNGST +GREERYN
Sbjct:    84 ADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYN 143

Query:   145 LWFDPSDDFHQYSILWTDSQIM---------EFKRTASMGGDFPAKPMSLYATIWDGSDW 195
             LWFDP++DFHQYSILW+ S I+         E KRTASMGGDFPAKPMSLY+TIWDGS W
Sbjct:   144 LWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKW 203

Query:   196 ATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRI 255
             AT+GGKY VNYKYAPYV++F+D +LHGC+ DP E+  S C       + + + ++ SQR 
Sbjct:   204 ATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPS-CKDEAVQNLRLASEITESQRN 262

Query:   256 KMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTF 301
             KME FR+KHMTYSYCYD +RYKV   ECV+NP EA+RL+V+DPVTF
Sbjct:   263 KMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKRLRVYDPVTF 308
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA;ISS
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
GO:0010154 "fruit development" evidence=IMP
GO:0080086 "stamen filament development" evidence=IMP
TAIR|locus:2059728 EXGT-A3 "endoxyloglucan transferase A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031750 XTH30 "xyloglucan endotransglucosylase/hydrolase 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117189 XTH29 "xyloglucan endotransglucosylase/hydrolase 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194554 XTH33 "xyloglucan:xyloglucosyl transferase 33" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123201 XTH2 "xyloglucan endotransglucosylase/hydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123281 XTH1 "xyloglucan endotransglucosylase/hydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086959 XTH3 "xyloglucan endotransglucosylase/hydrolase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075919 XTH31 "XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159118 XTH5 "xyloglucan endotransglucosylase/hydrolase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38909XTH28_ARATH2, ., 4, ., 1, ., 2, 0, 70.65440.97230.9518yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VIII2102
SubName- Full=Putative uncharacterized protein; (337 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-130
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 7e-61
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 5e-48
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 2e-21
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 7e-21
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 3e-16
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 1e-11
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 3e-09
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 0.002
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  371 bits (954), Expect = e-130
 Identities = 123/264 (46%), Positives = 164/264 (62%), Gaps = 14/264 (5%)

Query: 30  VPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTA 89
             FDE +   +G D++ V  DG SV L+LD+ +GSGF S + YL GFFS  IKLP   +A
Sbjct: 4   ASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSA 63

Query: 90  GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 149
           G V AFY+S+      NHDEIDFEFLGN+ G+ + +QTN++ NG    GRE+R  LWFDP
Sbjct: 64  GTVTAFYLSSQG--PDNHDEIDFEFLGNVTGQPYTLQTNVFANGVG--GREQRIYLWFDP 119

Query: 150 SDDFHQYSILWTDSQIM---------EFKRTASMGGDFPA-KPMSLYATIWDGSDWATNG 199
           + DFH YSILW   QI+          FK   ++G  +P+ +PM +YA+IWDGSDWAT G
Sbjct: 120 TADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQG 179

Query: 200 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMEN 259
           G+ ++++ YAP+V  + DF L GC  DP +  SS     +    S    +S +Q+  ME 
Sbjct: 180 GRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEW 239

Query: 260 FRRKHMTYSYCYDQIRYKVPPFEC 283
            RR +M Y YC D+ RY VPP EC
Sbjct: 240 VRRNYMVYDYCDDRKRYPVPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 99.98
cd08023235 GH16_laminarinase_like Laminarinase, member of the 99.96
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 99.96
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.95
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.93
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.92
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.9
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.89
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.87
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.76
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.42
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.37
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 85.32
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.2e-79  Score=578.44  Aligned_cols=273  Identities=31%  Similarity=0.613  Sum_probs=239.7

Q ss_pred             HHHHHHHHHHhhccc-cCCCCCCCcCCCCcccccCCceEEeCCCcEEEEEEeCCCCceeEeeceeEEeEEEEEEEecCCC
Q 020504            9 FLLVFSLLAVVASGL-YRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADY   87 (325)
Q Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~~~f~~~f~~~w~~~~v~~~~~G~~l~L~ld~~sGa~~~Sk~~y~YG~fear~Klp~g~   87 (325)
                      .||.||++++++-|+ -......+|+++|...|+.+|+.+.++|..|+|+||+.+|++|+||..|+||+||||||||+|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~   82 (291)
T PLN03161          3 SLKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGN   82 (291)
T ss_pred             hHHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCC
Confidence            456666666664333 3334678899999999999999998888899999999999999999999999999999999988


Q ss_pred             CCceEEEEEEeeCCCCCCCCCeeeEEEcCCcCCCCeEEEeeEEcCCcccCCcceEEecCCCCCCCcEEEEEEeCccceEE
Q 020504           88 TAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIME  167 (325)
Q Consensus        88 s~Gvv~Af~l~s~~~~~~~~dEIDiEfLG~~~g~p~~vqTNv~~~G~~~~~~e~~~~l~fDpt~dFHtYsIdWtpd~IR~  167 (325)
                      ++|+||||||++.+   +.||||||||||+++++|+++|||+|.+|.  +.++++++++|||+++||+|+|+|+|++|+|
T Consensus        83 saG~v~AFwl~s~~---~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~--g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~w  157 (291)
T PLN03161         83 SAGTVTAYYLSSTG---SRHDEIDFEFLGNVSGQPYTIHTNIYTQGN--GSREQQFRPWFDPTADFHNYTIHWNPSEVVW  157 (291)
T ss_pred             CCCeEEEEEecCCC---CCCCeEEEEecCCCCCCceEEEeceEeCCc--CCcceeccccCCCccCcEEEEEEEchhhEEE
Confidence            89999999999863   579999999999999999999999999987  6789999999999999999999999999999


Q ss_pred             Eeecc---------cCCCCCC-CCCceeEEeeccCCCCCCCCCccccCCCCCcEEEEEcEEEEeeeecCCCCCCCCccCC
Q 020504          168 FKRTA---------SMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDI  237 (325)
Q Consensus       168 ~~~~~---------~~g~~~P-~~Pm~l~lniW~gg~WAt~GG~~~id~s~aPf~a~v~~v~v~~c~~~~~~~~~~~C~~  237 (325)
                      |+|++         ..+.+|| .+||+|++|||+|++|||.||++||||+++||+|.|++|+|+||.+++... ...|..
T Consensus       158 yVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~-~~~c~~  236 (291)
T PLN03161        158 YVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVS-IKQCAD  236 (291)
T ss_pred             EECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCC-ccccCC
Confidence            99875         2356799 579999999999999999999999999999999999999999999865311 246865


Q ss_pred             C---CCCCCCCCCCCCHHHHHHHHHHhhcCeEEcccccCCCCCC-CCCcccCCh
Q 020504          238 T---ESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKV-PPFECVINP  287 (325)
Q Consensus       238 ~---~~~~~~~~~~L~~~q~~~~~~vr~~ymiYdYC~D~~R~p~-~p~EC~~~~  287 (325)
                      +   .|+....++.|+++|+++|+|||+||||||||+|++|||+ +||||.++.
T Consensus       237 ~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~  290 (291)
T PLN03161        237 PTPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKPQ  290 (291)
T ss_pred             CCccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCCc
Confidence            3   2443456789999999999999999999999999999998 899997653

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 1e-49
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 2e-49
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 2e-48
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 2e-48
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 3e-39
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 8e-10
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 1e-08
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 1e-08
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 1e-08
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 1e-08
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 1e-08
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 7e-08
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 4e-07
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 7e-07
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 1e-06
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 4e-06
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure 
Iteration: 1

 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 153/262 (58%), Gaps = 19/262 (7%)
Query: 32  FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
           FD+GY++L+G  +  V  D  S+ + LD  +GSGF S + Y  G+F A+IKL + YTAGV
Sbjct: 19  FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 76
Query: 92  VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFD 148
           + +FY+SN   +   HDEID EFLG I GK + +QTN++  GS     IGRE R +LWFD
Sbjct: 77  ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFD 136
Query: 149 PSDDFHQYSILWTDSQIMEF-------KRTASMGGDFPAKPMSLYATIWDGSDWATNGGK 201
           P+ D+H Y+I WT S+I+ F       +        FP +PM +Y ++WD S WAT  GK
Sbjct: 137 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPMWVYGSVWDASSWATENGK 196
Query: 202 YRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFR 261
           Y+ +Y+Y P+V ++ DF L  C+     + +S C+    + VS    +S  Q   ME  +
Sbjct: 197 YKADYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQ 249
Query: 262 RKHMTYSYCYDQIRYKVPPFEC 283
           + +M Y+YC D  R      EC
Sbjct: 250 KNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 4e-82
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 5e-82
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 3e-55
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 1e-54
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 9e-51
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 5e-49
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 7e-43
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 1e-42
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 1e-26
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 6e-16
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 2e-15
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 1e-06
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 3e-06
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 1e-05
3rq0_A269 Glycosyl hydrolases family protein 16; structural 2e-05
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 2e-05
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 2e-05
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 6e-05
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 1e-04
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 1e-04
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 4e-04
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
 Score =  249 bits (636), Expect = 4e-82
 Identities = 103/276 (37%), Positives = 153/276 (55%), Gaps = 23/276 (8%)

Query: 20  ASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSA 79
                  +  + FD+GY++L+G  +     D  S+ + LD  +GSGF S + Y  G+F A
Sbjct: 10  GYYPSSQITSLGFDQGYTNLWGPQH--QRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGA 67

Query: 80  SIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS--- 136
           +IKL + YTAGV+ +FY+SN   +   HDEID EFLG I GK + +QTN++  GS     
Sbjct: 68  NIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNI 127

Query: 137 IGREERYNLWFDPSDDFHQYSILWTDSQIM---------EFKRTASMGGDFPAKPMSLYA 187
           IGRE R +LWFDP+ D+H Y+I WT S+I+          + R +     FP +P+ +Y 
Sbjct: 128 IGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDAT--FPLRPLWVYG 185

Query: 188 TIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPT 247
           ++WD S WAT  GKY+ +Y+Y P+V ++ DF L  C+ +     +S C+    S      
Sbjct: 186 SVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVE----AASSCNPASVSPYG--- 238

Query: 248 GVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 283
            +S  Q   ME  ++ +M Y+YC D  R      EC
Sbjct: 239 QLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 99.97
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 99.97
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 99.97
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 99.97
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 99.97
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 99.97
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.96
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 99.96
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.96
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 99.96
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 99.95
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.95
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 99.94
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.9
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.89
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.85
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.67
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 96.86
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-72  Score=532.73  Aligned_cols=252  Identities=35%  Similarity=0.692  Sum_probs=228.4

Q ss_pred             CCCCCCcCCCCcccccCCceEEeCCCcEEEEEEeCCCCceeEeeceeEEeEEEEEEEecCCCCCceEEEEEEeeCCCCCC
Q 020504           26 NLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEK  105 (325)
Q Consensus        26 ~~~~~~f~~~f~~~w~~~~v~~~~~G~~l~L~ld~~sGa~~~Sk~~y~YG~fear~Klp~g~s~Gvv~Af~l~s~~~~~~  105 (325)
                      ...+.+|.++|+.+|+++||++.++|..|+|+|++.++|+|.||+.|+||+||||||+|+|+++|+||||||++++   |
T Consensus        11 ~~~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~---p   87 (278)
T 1umz_A           11 KPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQN---S   87 (278)
T ss_dssp             -CCCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSS---S
T ss_pred             cccCCcccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCC---C
Confidence            4568899999999999999999988888999999999999999999999999999999998889999999999985   7


Q ss_pred             CCCeeeEEEcCCcCCCCeEEEeeEEcCCcccCCcceEEecCCCCCCCcEEEEEEeCccceEEEeeccc---------CCC
Q 020504          106 NHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTAS---------MGG  176 (325)
Q Consensus       106 ~~dEIDiEfLG~~~g~p~~vqTNv~~~G~~~~~~e~~~~l~fDpt~dFHtYsIdWtpd~IR~~~~~~~---------~g~  176 (325)
                      .++|||||++|+++++|+++|+|+|.+|.  +++++++.+++||+++||+|+|+|+|++|+||+|++.         .+.
T Consensus        88 ~~gEIDmE~lG~~~g~~~tvhtn~~~~g~--~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~  165 (278)
T 1umz_A           88 EHDEIDFEFLGNRTGQPYILQTNVFTGGK--GDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGV  165 (278)
T ss_dssp             SCCEEEEEEECCSTTSCCEEEEEEEBTTB--CCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTC
T ss_pred             CCCeEEEEEeCCCCCCceEEEEEEecCCC--CCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCc
Confidence            89999999999999999999999999987  5788889999999999999999999999999999752         256


Q ss_pred             CCC-CCCceeEEeeccCCCCCCCCCccccCCCCCcEEEEEcEEEEeeeecCCCCCCCCccCCC--CCCCCCCCCCCCHHH
Q 020504          177 DFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT--ESSKVSIPTGVSPSQ  253 (325)
Q Consensus       177 ~~P-~~Pm~l~lniW~gg~WAt~GG~~~id~s~aPf~a~v~~v~v~~c~~~~~~~~~~~C~~~--~~~~~~~~~~L~~~q  253 (325)
                      .|| ++||+|++|+|+||+||+.||++++||+++||+++|+.++|+||.+++.   .+.|...  .|+....+++|+++|
T Consensus       166 ~~Pf~~P~~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~~~---~~~c~~~~~~~~~~~~~~~l~~~~  242 (278)
T 1umz_A          166 KFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVE---AKFCATQGARWWDQKEFQDLDAFQ  242 (278)
T ss_dssp             CCSCSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSS---SCCCTTTTCSGGGSGGGSSCCHHH
T ss_pred             cCcCCCceEEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCCCC---CCccCCCcccccccCccccCCHHH
Confidence            799 9999999999999999999998889999999999999999999997532   2369653  244344567899999


Q ss_pred             HHHHHHHhhcCeEEcccccCCCCCCCCCcccC
Q 020504          254 RIKMENFRRKHMTYSYCYDQIRYKVPPFECVI  285 (325)
Q Consensus       254 ~~~~~~vr~~ymiYdYC~D~~R~p~~p~EC~~  285 (325)
                      +++|+|||+||||||||+|++|||++||||.+
T Consensus       243 ~~~~~~~~~~~~~y~yc~d~~r~~~~~~ec~~  274 (278)
T 1umz_A          243 YRRLSWVRQKYTIYNYCTDRSRYPSMPPECKR  274 (278)
T ss_dssp             HHHHHHHHHHTEEEEGGGCTTTCSSCCTHHHH
T ss_pred             HHHHHHHHHCCeEEecCCCCCcCCCCCcccCC
Confidence            99999999999999999999999999999974
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 2e-77
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 7e-33
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 4e-14
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 1e-13
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 9e-09
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 1e-04
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  235 bits (601), Expect = 2e-77
 Identities = 89/267 (33%), Positives = 131/267 (49%), Gaps = 16/267 (5%)

Query: 30  VPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTA 89
           V F   Y   +  D++     G  + L LD+ TG+GF S   YL G FS  +KL    +A
Sbjct: 4   VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 63

Query: 90  GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 149
           G V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP
Sbjct: 64  GTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKG--DREQRIYLWFDP 118

Query: 150 SDDFHQYSILWTDSQI---------MEFKRTASMGG-DFPAKPMSLYATIWDGSDWATNG 199
           + +FH YS+LW    I           FK    +G      +PM +Y+++W+  DWAT G
Sbjct: 119 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRG 178

Query: 200 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMEN 259
           G  + ++  AP++  +  F + GC     E                   +   Q  ++  
Sbjct: 179 GLEKTDWSKAPFIASYRSFHIDGCEASV-EAKFCATQGARWWDQKEFQDLDAFQYRRLSW 237

Query: 260 FRRKHMTYSYCYDQIRYKVPPFECVIN 286
            R+K+  Y+YC D+ RY   P EC  +
Sbjct: 238 VRQKYTIYNYCTDRSRYPSMPPECKRD 264
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 99.97
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.94
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.92
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.92
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.9
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 85.0
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=5.2e-75  Score=544.28  Aligned_cols=251  Identities=35%  Similarity=0.698  Sum_probs=229.4

Q ss_pred             CCCcCCCCcccccCCceEEeCCCcEEEEEEeCCCCceeEeeceeEEeEEEEEEEecCCCCCceEEEEEEeeCCCCCCCCC
Q 020504           29 IVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHD  108 (325)
Q Consensus        29 ~~~f~~~f~~~w~~~~v~~~~~G~~l~L~ld~~sGa~~~Sk~~y~YG~fear~Klp~g~s~Gvv~Af~l~s~~~~~~~~d  108 (325)
                      .++|+++|.++|+.+||++.++|..|+|+||+.+||+|+||+.|+||+||||||||+|+++|++++|||+++   ++.+|
T Consensus         3 ~~~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~---~~~~d   79 (267)
T d1umza_           3 DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQ---NSEHD   79 (267)
T ss_dssp             CCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECS---SSSCC
T ss_pred             cccCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCC---CCCCC
Confidence            578999999999999999999999999999999999999999999999999999999988999999999987   47899


Q ss_pred             eeeEEEcCCcCCCCeEEEeeEEcCCcccCCcceEEecCCCCCCCcEEEEEEeCccceEEEeecc---------cCCCCCC
Q 020504          109 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEFKRTA---------SMGGDFP  179 (325)
Q Consensus       109 EIDiEfLG~~~g~p~~vqTNv~~~G~~~~~~e~~~~l~fDpt~dFHtYsIdWtpd~IR~~~~~~---------~~g~~~P  179 (325)
                      |||||++|++.++++++|||+|.+|.  +++++++.+++||+++||+|+|+|+|++|+||+|+.         ..+.++|
T Consensus        80 EIDiE~lG~~~~~~~~v~tn~~~~g~--g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p  157 (267)
T d1umza_          80 EIDFEFLGNRTGQPYILQTNVFTGGK--GDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFP  157 (267)
T ss_dssp             EEEEEEECCSTTSCCEEEEEEEBTTB--CCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCS
T ss_pred             eEEEEEecccCCcccEEEeeEeCCCC--CCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCC
Confidence            99999999999999999999999998  678999999999999999999999999999999875         3456777


Q ss_pred             -CCCceeEEeeccCCCCCCCCCccccCCCCCcEEEEEcEEEEeeeecCCCCCCCCccCC--CCCCCCCCCCCCCHHHHHH
Q 020504          180 -AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDI--TESSKVSIPTGVSPSQRIK  256 (325)
Q Consensus       180 -~~Pm~l~lniW~gg~WAt~GG~~~id~s~aPf~a~v~~v~v~~c~~~~~~~~~~~C~~--~~~~~~~~~~~L~~~q~~~  256 (325)
                       ++||+|++|||+||+|||.||+.+|||+++||+|.|++|+|+||.+++..   ..|..  ..|++...++.|+.+|+++
T Consensus       158 ~~~pm~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (267)
T d1umza_         158 FNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEA---KFCATQGARWWDQKEFQDLDAFQYRR  234 (267)
T ss_dssp             CSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSS---CCCTTTTCSGGGSGGGSSCCHHHHHH
T ss_pred             cceEEEEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCCCC---cccCCCCCccccccccccCCHHHHHH
Confidence             89999999999999999999999999999999999999999999987542   23433  2344455678999999999


Q ss_pred             HHHHhhcCeEEcccccCCCCCCCCCcccCCh
Q 020504          257 MENFRRKHMTYSYCYDQIRYKVPPFECVINP  287 (325)
Q Consensus       257 ~~~vr~~ymiYdYC~D~~R~p~~p~EC~~~~  287 (325)
                      |+|||+||||||||+|++|||.+||||.++.
T Consensus       235 ~~~~~~~~~~y~yC~d~~r~~~~p~EC~~~~  265 (267)
T d1umza_         235 LSWVRQKYTIYNYCTDRSRYPSMPPECKRDR  265 (267)
T ss_dssp             HHHHHHHTEEEEGGGCTTTCSSCCTHHHHHT
T ss_pred             HHHHHHCCcEEccCCCCCcCCCCCcccCCCC
Confidence            9999999999999999999999999998654
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure