Citrus Sinensis ID: 020520

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MAAFLPSNPSTSCCSFKFSNLPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAISGS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEccccccccccccEEEccccEEEEEccccccHHHHHHHHHcccccEEEEEEEEEcccccccccHHHHHHcccEEccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHcccccccccccHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEccHHHHccccccEEEEEcccEEEEcccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEHEcccccEEEEEEEEEEEccccEEEEEccccccHHHHHHHHccHccccccccEEEEcccEccccccHHHHHHHHcHEEccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHccccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccEEEEEcccEEEEEEccEEEEEccHHHHHccccccEEEEccc
Coil and Loop (DISEMBL)
maaflpsnpstsccsfkfsnlpskshvftlpalpllcrrsnyhrhhlSLNRVTAALSavdsplksssdgqdeksqpllqvTGLTAVIAESKQEILKGVNLLVNEGEVHaimgkngsgkstLSKVLvghpdyevtegsvvfkgenllemepeERSLAGlfmsfqspveipgvnnidFLHMAYNARrrklgqpeigpieFYAYLYPKLERLSMKTDFLNRnvnegfsggerkrNEILQLAVLGADLAILDeidsgldvDALRDVAKAVNglltpknsLLMITHYRRLLEFIkptfihimedgriiktgDASIATVLEeggykaisgs
Flexible Loop (DISEMBL)
maaflpsnpstsCCSFKFSNLPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKsssdgqdeksqplLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAimgkngsgksTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRklgqpeigpIEFYAYLYPKLERLSMKTDFLNRNVNegfsggerkrNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAvnglltpknslLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVleeggykaisgs
Low Complexity Region (SEG)
MAAFLPSNPSTSCCSFKFSNLPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAISGS
Disordered region (IsUnstruct)
************CCSFKFSNLPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAAL*********************LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNG***STLSKVLVGHPDYEVTEGSVVFKGENLLE******SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG*******
Disordered Region (DISOPRED)
*****************************************************************************LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYN************PIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAISG*
Disordered Region (DISEMBL)
***********SCCSFKFSNLPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALS******************PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAISGS
Disordered Region (DISPRO)
********PSTSCCSFKFSNLPSKSHVFTLPALPLLCR***********************************SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAFLPSNPSTSCCSFKFSNLPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAISGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q9CAF5	338	ABC transporter I family	yes	no	0.790	0.760	0.809	1e-119
P48255	259	Probable ATP-dependent tr	N/A	no	0.766	0.961	0.583	1e-80
O78474	253	Probable ATP-dependent tr	yes	no	0.747	0.960	0.555	4e-79
Q1XDP6	251	Probable ATP-dependent tr	N/A	no	0.763	0.988	0.552	9e-79
P51241	251	Probable ATP-dependent tr	N/A	no	0.769	0.996	0.543	3e-77
Q55791	256	Probable ATP-dependent tr	N/A	no	0.750	0.953	0.560	2e-76
Q00830	251	Probable ATP-dependent tr	N/A	no	0.753	0.976	0.514	1e-75
Q02856	251	Probable ATP-dependent tr	N/A	no	0.741	0.960	0.526	3e-75
P35020	257	Probable ATP-dependent tr	N/A	no	0.772	0.976	0.511	1e-73
Q9TLX1	254	Probable ATP-dependent tr	N/A	no	0.772	0.988	0.482	4e-66

>sp|Q9CAF5|AB6I_ARATH ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/257 (80%), Positives = 237/257 (92%)

Query: 68  DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
           D  D    PLL+V  L AVIAES+QEILKGVNL+V EGEVHA+MGKNGSGKST SKVLVG
Sbjct: 82  DRDDVGRIPLLEVRDLRAVIAESRQEILKGVNLVVYEGEVHAVMGKNGSGKSTFSKVLVG 141

Query: 128 HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187
           HPDYEVT GS+VFKG+NLL+MEPE+RSLAGLFMSFQSPVEIPGV+N+DFL+MA+NAR+RK
Sbjct: 142 HPDYEVTGGSIVFKGQNLLDMEPEDRSLAGLFMSFQSPVEIPGVSNMDFLNMAFNARKRK 201

Query: 188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAIL 247
           LGQPE+ PI+FY++L  KLE ++MKTDFLNRNVNEGFSGGERKRNEILQLAVLGA+LAIL
Sbjct: 202 LGQPELDPIQFYSHLVSKLEVVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAELAIL 261

Query: 248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           DEIDSGLDVDAL+DVAKAVNGLLTPKNS+LMITHY+RLL++IKPT IHIME+GRIIKTGD
Sbjct: 262 DEIDSGLDVDALQDVAKAVNGLLTPKNSVLMITHYQRLLDYIKPTLIHIMENGRIIKTGD 321

Query: 308 ASIATVLEEGGYKAISG 324
            S+A +LE+ GYKAISG
Sbjct: 322 NSLAKLLEKEGYKAISG 338

Essential protein. Required during embryo development, especially at early stages. Involved in chloroplast differentiation.
Arabidopsis thaliana (taxid: 3702)

>sp|P48255|ABCX_CYAPA Probable ATP-dependent transporter ycf16 OS=Cyanophora paradoxa GN=ycf16 PE=3 SV=1

 Score =  300 bits (768), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/252 (58%), Positives = 195/252 (77%), Gaps = 3/252 (1%)

Query: 72  EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY 131
           EK++ +L+V  L A +  +  EILKGVNL +N GE+HAIMG NGSGKST SK+L GHP Y
Sbjct: 4   EKTK-ILEVKNLKAQVDGT--EILKGVNLTINSGEIHAIMGPNGSGKSTFSKILAGHPAY 60

Query: 132 EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP 191
           +VT G ++FK +NLLE+EPEER+ AG+F++FQ P+EI GV+NIDFL +AYN RR++ G  
Sbjct: 61  QVTGGEILFKNKNLLELEPEERARAGVFLAFQYPIEIAGVSNIDFLRLAYNNRRKEEGLT 120

Query: 192 EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251
           E+ P+ FY+ +  KL  + M   FLNRNVNEGFSGGE+KRNEILQ+A+L   LAILDE D
Sbjct: 121 ELDPLTFYSIVKEKLNVVKMDPHFLNRNVNEGFSGGEKKRNEILQMALLNPSLAILDETD 180

Query: 252 SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA 311
           SGLD+DALR VA+ VN L   +NS+++ITHY+RLL++I P +IH+M++GRI+KTG A +A
Sbjct: 181 SGLDIDALRIVAEGVNQLSNKENSIILITHYQRLLDYIVPDYIHVMQNGRILKTGGAELA 240

Query: 312 TVLEEGGYKAIS 323
             LE  GY  ++
Sbjct: 241 KELEIKGYDWLN 252

Cyanophora paradoxa (taxid: 2762)

>sp|O78474|ABCX_GUITH Probable ATP-dependent transporter ycf16 OS=Guillardia theta GN=ycf16 PE=3 SV=1

 Score =  295 bits (754), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 136/245 (55%), Positives = 188/245 (76%), Gaps = 2/245 (0%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
           + +L+VT L A + E K  I+KG+NL+VN GE+HAIMGKNGSGKST +K++ GHPDY +T
Sbjct: 3   KKILEVTNLHAAVNEIK--IVKGLNLVVNAGEIHAIMGKNGSGKSTFAKIIAGHPDYTIT 60

Query: 135 EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIG 194
            G + ++  ++LE+ PE+R+  G+F+SFQ P+EIPGV N DFL +A NARR   G PE+ 
Sbjct: 61  NGDITYQHTSILELTPEDRAKRGIFLSFQYPIEIPGVTNADFLRLACNARRIYQGLPEME 120

Query: 195 PIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254
           P+EF+ Y+  KL  + +K  FL R+VNEGFSGGE+KRNEILQ+++L   LA+LDE DSGL
Sbjct: 121 PLEFFEYINSKLPLVDLKPSFLTRDVNEGFSGGEKKRNEILQMSILDTKLAVLDETDSGL 180

Query: 255 DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVL 314
           D+DALR VA  +  L    N++++ITHY+RLL++IKP F+H+M++G+IIKTG AS+A  L
Sbjct: 181 DIDALRTVANGIKSLANDGNAIILITHYQRLLDYIKPDFVHVMQEGKIIKTGSASLALDL 240

Query: 315 EEGGY 319
           E+ GY
Sbjct: 241 EKYGY 245

Guillardia theta (taxid: 55529)

>sp|Q1XDP6|ABCX_PORYE Probable ATP-dependent transporter ycf16 OS=Porphyra yezoensis GN=ycf16 PE=3 SV=1

 Score =  293 bits (751), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 138/250 (55%), Positives = 190/250 (76%), Gaps = 2/250 (0%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           SQ +L++  L A + E+   ILKGVNL +  GE+HAIMG NGSGKSTLSKV+ GHP Y +
Sbjct: 2   SQTILEIKDLYASVGETT--ILKGVNLSIRAGEIHAIMGPNGSGKSTLSKVIAGHPAYSL 59

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
             G ++F G+++LE+EP+ER+ AG+F++FQ PVEIPGV+N DFL +A NARR+  G  E 
Sbjct: 60  ISGDILFFGQSILEIEPDERAKAGIFLAFQYPVEIPGVSNSDFLRIALNARRKFQGLSEF 119

Query: 194 GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSG 253
            P+EF+  +  K++ + M+  FL RNVNEGFSGGE+KRNEILQ+A+L + ++ILDE DSG
Sbjct: 120 SPLEFFQLITEKIDLVGMQESFLTRNVNEGFSGGEKKRNEILQMALLDSKISILDETDSG 179

Query: 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV 313
           LD+DALR VAK +N L    NS+++ITHY+RLL++I P F+HIM +G+I+KTG  ++A  
Sbjct: 180 LDIDALRVVAKGINTLAKSTNSIILITHYQRLLDYIIPDFVHIMSNGQIVKTGSVTLAQD 239

Query: 314 LEEGGYKAIS 323
           LE+ GY  I+
Sbjct: 240 LEKHGYDWIT 249

Porphyra yezoensis (taxid: 2788)

>sp|P51241|ABCX_PORPU Probable ATP-dependent transporter ycf16 OS=Porphyra purpurea GN=ycf16 PE=3 SV=1

 Score =  288 bits (738), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/252 (54%), Positives = 191/252 (75%), Gaps = 2/252 (0%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           S  +L++  L A + +    ILKGVNL +  GE+HAIMG NGSGKSTLSKV+ GHP Y +
Sbjct: 2   SDYILEIKDLHASVNDVP--ILKGVNLSIKPGEIHAIMGPNGSGKSTLSKVIAGHPAYSL 59

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
             G ++F G ++L+MEP+ER+ AG+F++FQ PVEIPGV+N DFL +A NARR+    PE+
Sbjct: 60  LNGDILFYGRSILKMEPDERARAGIFLAFQYPVEIPGVSNADFLRIALNARRKFRELPEL 119

Query: 194 GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSG 253
            P+EF+  +  K+  + MK  FL+RNVNEGFSGGE+KRNEILQ+A+L ++L+ILDE DSG
Sbjct: 120 SPLEFFQLITEKINLVGMKESFLSRNVNEGFSGGEKKRNEILQMALLESNLSILDETDSG 179

Query: 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV 313
           LD+DAL+ +A+ +N L T  NS+++ITHY+RLL++I P F+HIM DG+I+KTG+ ++A  
Sbjct: 180 LDIDALKIIAQGINTLATSTNSIVLITHYQRLLDYIIPNFVHIMSDGKIVKTGNVNLAQD 239

Query: 314 LEEGGYKAISGS 325
           LE+ GY  I  +
Sbjct: 240 LEKHGYDWIKST 251

Porphyra purpurea (taxid: 2787)

>sp|Q55791|Y075_SYNY3 Probable ATP-dependent transporter slr0075 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0075 PE=3 SV=1

 Score =  286 bits (732), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 186/246 (75%), Gaps = 2/246 (0%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           SQ +L +  LTA +     +ILKGVNL +  GEVHAIMG+NGSGKSTLSKV+ GHPDYE+
Sbjct: 2   SQTILSIKNLTASV--DGNQILKGVNLEIKAGEVHAIMGRNGSGKSTLSKVITGHPDYEI 59

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
           T G ++++G++L  +EP ER+LAG+F++FQ P+EIPGV+N+DFL +AYNA+R+ LG  E+
Sbjct: 60  TGGEIIYQGQDLSALEPHERALAGIFLAFQYPLEIPGVSNLDFLRIAYNAKRKHLGLEEL 119

Query: 194 GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSG 253
              +F   +  KL+ + M   FL R++NEGFSGGE+KRNEILQ+A+L   L+ILDEIDSG
Sbjct: 120 DTFDFEDLIQEKLDVVKMNPAFLERSLNEGFSGGEKKRNEILQMAILEPTLSILDEIDSG 179

Query: 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV 313
           LD+DALR V++ VN L  P N+ L+ITHY+RLL +I P  IH+M DG+I+ +G   +A  
Sbjct: 180 LDIDALRIVSEGVNFLKNPDNATLVITHYQRLLNYIIPDHIHVMYDGKIVMSGGKELALE 239

Query: 314 LEEGGY 319
           LEE GY
Sbjct: 240 LEEKGY 245

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q00830|ABCX_ODOSI Probable ATP-dependent transporter ycf16 OS=Odontella sinensis GN=ycf16 PE=3 SV=1

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 127/247 (51%), Positives = 190/247 (76%), Gaps = 2/247 (0%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
           P+L++  L A I E+  EILK +NL +++GE+HAIMG NGSGKST SKVL GHP Y +  
Sbjct: 6   PILEIKNLKACINEN--EILKDLNLKIHKGEIHAIMGPNGSGKSTFSKVLAGHPAYNILS 63

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
           G ++FKG ++L ++PEERS  G+F++FQ P+EIPGV+N DFL +AYN++++ L + E+ P
Sbjct: 64  GDILFKGSSILNLDPEERSHMGIFLAFQYPIEIPGVSNEDFLRLAYNSKQKFLNKDEVDP 123

Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
           I F+  +  KL+ + M   FL+RNVNEGFSGGE+KRNEILQ+ +L ++L+ILDE DSGLD
Sbjct: 124 ISFFTIINEKLKLVDMSPVFLSRNVNEGFSGGEKKRNEILQMILLDSELSILDETDSGLD 183

Query: 256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE 315
           +DAL+ ++K +N  +    ++++ITHY+RLL++++P ++H+M++G+IIKTG A +A  LE
Sbjct: 184 IDALKIISKGINTFMNQNKAIILITHYQRLLDYVQPNYVHVMQNGKIIKTGTADLAKELE 243

Query: 316 EGGYKAI 322
             GY+ +
Sbjct: 244 SKGYEWL 250

Odontella sinensis (taxid: 2839)

>sp|Q02856|ABCX_ANTSP Probable ATP-dependent transporter ycf16 OS=Antithamnion sp. GN=ycf16 PE=3 SV=1

 Score =  281 bits (720), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 128/243 (52%), Positives = 185/243 (76%), Gaps = 2/243 (0%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
           LL +  L   I E+  +IL  +NL +  GE+HAIMGKNGSGKSTL+KV+ GHP Y++T G
Sbjct: 6   LLNIKNLDVTIGET--QILNSLNLSIKPGEIHAIMGKNGSGKSTLAKVIAGHPSYKITNG 63

Query: 137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
            ++F+ +++ E+EPE+RS  G+F++FQ PVEIPGV N DFL +AYNA+R    + E+ P+
Sbjct: 64  QILFENQDVTEIEPEDRSHLGIFLAFQYPVEIPGVTNADFLRIAYNAKRAFDNKEELDPL 123

Query: 197 EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
            F++++  K+  + + + FL+RNVNEGFSGGE+K+NEILQ+++L + LAILDE DSGLD+
Sbjct: 124 SFFSFIENKISNIDLNSTFLSRNVNEGFSGGEKKKNEILQMSLLNSKLAILDETDSGLDI 183

Query: 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316
           DAL+ +AK +N L T +NS+++ITHY+RLL++IKP +IH+M+ G II TG +  A  LE+
Sbjct: 184 DALKTIAKQINSLKTQENSIILITHYQRLLDYIKPDYIHVMQKGEIIYTGGSDTAMKLEK 243

Query: 317 GGY 319
            GY
Sbjct: 244 YGY 246

Antithamnion sp (taxid: 2767)

>sp|P35020|ABCX_GALSU Probable ATP-dependent transporter ycf16 OS=Galdieria sulphuraria GN=ycf16 PE=3 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/254 (51%), Positives = 189/254 (74%), Gaps = 3/254 (1%)

Query: 73  KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE 132
           K + LLQ+  L   +A +++ IL G+NL VN+GE+HAIMG NGSGKSTLSKV+ GH  Y+
Sbjct: 2   KHKSLLQIKNLHVKLANTEEYILNGINLNVNQGEIHAIMGPNGSGKSTLSKVIAGHSLYK 61

Query: 133 VTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
           V +G ++F+ +NLL    E+R+  G+F++FQ P+EI GVNNIDFL +AYN++ +   +  
Sbjct: 62  VVKGEIIFQDQNLLNYTIEDRANLGIFLAFQYPLEIAGVNNIDFLRLAYNSKLKFNQRNP 121

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
           + P++F   +YPKL+ + +   FL R VNEGFSGGE+K+NEILQ+++L A LAILDE DS
Sbjct: 122 VDPLKFLEIVYPKLKLVGLDESFLYRKVNEGFSGGEKKKNEILQMSLLDAKLAILDETDS 181

Query: 253 GLDVDALRDVAKAVNGLLTP---KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
           GLD+DAL+D++ A+  +L     K S+++ITHY+R+L +I+P +IH+M  G+IIKTGDAS
Sbjct: 182 GLDIDALQDISNAIKSILKMSQFKQSIIIITHYQRILNYIQPDYIHVMYKGKIIKTGDAS 241

Query: 310 IATVLEEGGYKAIS 323
           +A  LE  GY+ ++
Sbjct: 242 LANQLESQGYEWLA 255

Galdieria sulphuraria (taxid: 130081)

>sp|Q9TLX1|ABCX_CYACA Probable ATP-dependent transporter ycf16 OS=Cyanidium caldarium GN=ycf16 PE=3 SV=1

 Score =  251 bits (642), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 170/253 (67%), Gaps = 2/253 (0%)

Query: 73  KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE 132
           K   +L +  L A + E   E+L  +NL +   E H IMG NGSGKS+L KV+ GHP Y+
Sbjct: 2   KETSVLTIQNLKACVNEF--EVLHNINLQIKTNETHVIMGPNGSGKSSLLKVIAGHPSYK 59

Query: 133 VTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
           V EG +  +  ++ +  PEERS  G+F+ FQ P+EI GVNN DFL   YN +R+K G  +
Sbjct: 60  VIEGKIFVENIDITQATPEERSNLGVFLGFQYPIEITGVNNADFLRAVYNQKRKKQGLKD 119

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
           + P+EF   L P L+ +SM   FL+RN+NEGFSGGE+KRNEILQ+ +    LAILDE DS
Sbjct: 120 LDPLEFLEILSPILDLVSMDQTFLHRNLNEGFSGGEKKRNEILQMILSKPRLAILDEPDS 179

Query: 253 GLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIAT 312
           GLD+DALR +++ +N L   K  +L+ITHY+ LL+++ P  +HIM+ G+I++TGD ++A 
Sbjct: 180 GLDIDALRSISEVINKLRNQKQCMLIITHYQNLLDYVIPDKVHIMDHGKIVETGDVTLAI 239

Query: 313 VLEEGGYKAISGS 325
            L+  GYK I  S
Sbjct: 240 QLKRKGYKWIKQS 252

Cyanidium caldarium (taxid: 2771)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
255565291	326	abc transporter, putative [Ricinus commu	1.0	0.996	0.726	1e-127
449457167	329	PREDICTED: ABC transporter I family memb	0.92	0.908	0.760	1e-125
224097506	327	white-brown-complex ABC transporter fami	0.932	0.926	0.751	1e-123
225464033	321	PREDICTED: ABC transporter I family memb	0.938	0.950	0.724	1e-122
15228351	338	ABC transporter I family member 6 [Arabi	0.790	0.760	0.809	1e-117
21537227	338	putative ABC transporter ATPase [Arabido	0.790	0.760	0.809	1e-117
297833848	338	ATNAP7 [Arabidopsis lyrata subsp. lyrata	0.766	0.736	0.823	1e-117
116792273	332	unknown [Picea sitchensis]	0.932	0.912	0.652	1e-107
357520651	285	ABC transporter I family member [Medicag	0.763	0.870	0.741	1e-104
147839171	217	hypothetical protein VITISV_019393 [Viti	0.655	0.981	0.854	1e-103

>gi|255565291|ref|XP_002523637.1| abc transporter, putative [Ricinus communis] gi|223537089|gb|EEF38723.1| abc transporter, putative [Ricinus communis]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/326 (72%), Positives = 268/326 (82%), Gaps = 1/326 (0%)

Query: 1   MAAFLPSNPSTSCCSFKFSNLPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVD 60
           MAA   S  S S  S +F +      + T PA P L   S ++R      R    ++A  
Sbjct: 1   MAALHLSFLSQSPPSLQFKSSSLDLQLSTYPAAPTLRFPSIHNRRRRCCWRSLHLVNATL 60

Query: 61  SPLKSSSDGQDEKSQ-PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKS 119
           S    + DG   + + PLL+V  LTAVIAESKQEILKGVNL+V+EGEVHA+MGKNGSGKS
Sbjct: 61  SAAVETIDGTASREKTPLLEVKDLTAVIAESKQEILKGVNLVVHEGEVHAVMGKNGSGKS 120

Query: 120 TLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHM 179
           T SKVLVGHPDYEVT GSVVFKGENLL+MEPEERSLAGLFMSFQSPVEIPGVNNIDFL+M
Sbjct: 121 TFSKVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSFQSPVEIPGVNNIDFLNM 180

Query: 180 AYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239
           AYNARR+KLG PE+GPIEFYAYL+PKLE ++MK+DFLNRNVNEGFSGGE+KRNEILQLAV
Sbjct: 181 AYNARRKKLGLPELGPIEFYAYLFPKLELVNMKSDFLNRNVNEGFSGGEKKRNEILQLAV 240

Query: 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299
           LGADLAILDEIDSGLD+DAL+DVAKAVNG+LTPKNS+LMITHY RLLEFI PT+IHIMED
Sbjct: 241 LGADLAILDEIDSGLDIDALKDVAKAVNGILTPKNSVLMITHYLRLLEFIHPTYIHIMED 300

Query: 300 GRIIKTGDASIATVLEEGGYKAISGS 325
           GRI+KTGD SIA VLE+ GYKAI+ S
Sbjct: 301 GRIVKTGDISIAKVLEKEGYKAITPS 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457167|ref|XP_004146320.1| PREDICTED: ABC transporter I family member 6, chloroplastic-like [Cucumis sativus] gi|449523329|ref|XP_004168676.1| PREDICTED: ABC transporter I family member 6, chloroplastic-like [Cucumis sativus]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/305 (76%), Positives = 259/305 (84%), Gaps = 6/305 (1%)

Query: 21  LPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQV 80
           LPS S +  +     L  R N  R   S+   TA+LSAV+SP  S SD Q      LL+V
Sbjct: 31  LPSNSTLSMMTTFSHLPFRFNLRR---SVRIATASLSAVNSPSTSFSDSQ---KSLLLEV 84

Query: 81  TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF 140
             LTAVIAE+KQEILKGVNL+V EGEVHAIMGKNGSGKST +KVLVGHPDYEVT GS+VF
Sbjct: 85  KDLTAVIAETKQEILKGVNLVVYEGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSIVF 144

Query: 141 KGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA 200
           KG +LLEMEPEERSLAGLFMSFQSPVEIPGV+NIDFL+MAYNARRRKLG  E+GPIEFYA
Sbjct: 145 KGSDLLEMEPEERSLAGLFMSFQSPVEIPGVSNIDFLNMAYNARRRKLGLAELGPIEFYA 204

Query: 201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
           Y++PKL+ ++MKTDFLNRNVNEGFSGGERKRNEILQLAVLGA++AILDEIDSGLDVDALR
Sbjct: 205 YIFPKLDLVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAEMAILDEIDSGLDVDALR 264

Query: 261 DVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320
           DVAKAVNGLLTP NS+LMITHY RLLEFIKP+ IH+MEDG+I+KTGD SIA +LEE GYK
Sbjct: 265 DVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRIHVMEDGKIVKTGDISIAKLLEEEGYK 324

Query: 321 AISGS 325
           AIS S
Sbjct: 325 AISTS 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097506|ref|XP_002310964.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222850784|gb|EEE88331.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/310 (75%), Positives = 262/310 (84%), Gaps = 7/310 (2%)

Query: 16  FKFSNLPSKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQ 75
            K S LP  S++FT  A      RS   R    L  VTA++ AV++   + +D    K +
Sbjct: 25  LKLSTLPLNSNLFTYSA-----TRSLRLRSTRRLPAVTASVPAVETTGTTGTDSG--KKR 77

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
           PLL+V  LTAVIAESKQEILKGVN+++ EGEVHAIMGKNGSGKST SKVL GHPDYEVT 
Sbjct: 78  PLLEVKDLTAVIAESKQEILKGVNVVLYEGEVHAIMGKNGSGKSTFSKVLAGHPDYEVTG 137

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
           GSVVFKGENLL+MEPEERSLAGLFMSFQSPVEIPGVNNIDFL+MAYNARRRKLG PE+GP
Sbjct: 138 GSVVFKGENLLDMEPEERSLAGLFMSFQSPVEIPGVNNIDFLNMAYNARRRKLGLPELGP 197

Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
           IEFYAYL+PKLE ++MK+DFLNRNVNEGFSGGERKRNEILQLAVLGA+LAILDEIDSGLD
Sbjct: 198 IEFYAYLFPKLELVNMKSDFLNRNVNEGFSGGERKRNEILQLAVLGAELAILDEIDSGLD 257

Query: 256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE 315
           +DAL+DVAKAVNG+LTP N++LMITHY RLLEFIKPT IHIME+GRI+KTGD SIA  LE
Sbjct: 258 IDALQDVAKAVNGMLTPNNAVLMITHYLRLLEFIKPTCIHIMENGRIVKTGDISIAKTLE 317

Query: 316 EGGYKAISGS 325
           + GYKAIS S
Sbjct: 318 KEGYKAISAS 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464033|ref|XP_002267203.1| PREDICTED: ABC transporter I family member 6, chloroplastic [Vitis vinifera] gi|296087808|emb|CBI35064.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/319 (72%), Positives = 261/319 (81%), Gaps = 14/319 (4%)

Query: 13  CCSFKFSNLP--------SKSHVFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLK 64
           CC+    + P        S    FT  A  LL  R+   R  LSL   TA L+ V S   
Sbjct: 5   CCACSPQSSPLTFIPKSSSNFRAFTCSATRLLSIRTP-SRRPLSL---TATLATVHSAEA 60

Query: 65  SSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKV 124
           S  D +D+K   LL+V  LTAVI+ESKQ+ILKGVNL+V EGEVHA+MGKNGSGKST SKV
Sbjct: 61  SGVDSRDKKL--LLEVKDLTAVISESKQQILKGVNLVVYEGEVHAVMGKNGSGKSTFSKV 118

Query: 125 LVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR 184
           LVGHPDYEVT G+VVFKGENLL+M+PEER+LAGLFMSFQSPVEIPGV+NIDFL+MAYNA+
Sbjct: 119 LVGHPDYEVTGGTVVFKGENLLDMDPEERALAGLFMSFQSPVEIPGVSNIDFLNMAYNAQ 178

Query: 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
           RRKLG PE+GPIEFY Y+ PKL+ ++MK DFLNRNVNEGFSGGERKRNEILQLAVLGADL
Sbjct: 179 RRKLGLPELGPIEFYGYISPKLDIVNMKIDFLNRNVNEGFSGGERKRNEILQLAVLGADL 238

Query: 245 AILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304
           AILDEIDSGLD+DAL+DVAKAVNGLLTP NS+L+ITHY RLLEFIKPT+IH+MEDGRI+K
Sbjct: 239 AILDEIDSGLDIDALKDVAKAVNGLLTPVNSVLIITHYLRLLEFIKPTYIHVMEDGRIVK 298

Query: 305 TGDASIATVLEEGGYKAIS 323
           TGD SIA VLEE GYKAIS
Sbjct: 299 TGDISIAKVLEEEGYKAIS 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228351|ref|NP_187678.1| ABC transporter I family member 6 [Arabidopsis thaliana] gi|75333645|sp|Q9CAF5.1|AB6I_ARATH RecName: Full=ABC transporter I family member 6, chloroplastic; Short=ABC transporter ABCI.6; Short=AtABCI6; AltName: Full=ABC transporter ATPase; AltName: Full=Non-intrinsic ABC protein 7; Short=AtNAP7; AltName: Full=Plastid SufC-like protein; Flags: Precursor gi|12322801|gb|AAG51398.1|AC011560_30 putative ABC transporter ATPase; 10053-12032 [Arabidopsis thaliana] gi|14334904|gb|AAK59630.1| putative ABC transporter ATPase [Arabidopsis thaliana] gi|21281251|gb|AAM44965.1| putative ABC transporter ATPase [Arabidopsis thaliana] gi|51173055|tpg|DAA05587.1| TPA_exp: plastid SufC-like protein [Arabidopsis thaliana] gi|332641420|gb|AEE74941.1| ABC transporter I family member 6 [Arabidopsis thaliana]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/257 (80%), Positives = 237/257 (92%)

Query: 68  DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
           D  D    PLL+V  L AVIAES+QEILKGVNL+V EGEVHA+MGKNGSGKST SKVLVG
Sbjct: 82  DRDDVGRIPLLEVRDLRAVIAESRQEILKGVNLVVYEGEVHAVMGKNGSGKSTFSKVLVG 141

Query: 128 HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187
           HPDYEVT GS+VFKG+NLL+MEPE+RSLAGLFMSFQSPVEIPGV+N+DFL+MA+NAR+RK
Sbjct: 142 HPDYEVTGGSIVFKGQNLLDMEPEDRSLAGLFMSFQSPVEIPGVSNMDFLNMAFNARKRK 201

Query: 188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAIL 247
           LGQPE+ PI+FY++L  KLE ++MKTDFLNRNVNEGFSGGERKRNEILQLAVLGA+LAIL
Sbjct: 202 LGQPELDPIQFYSHLVSKLEVVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAELAIL 261

Query: 248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           DEIDSGLDVDAL+DVAKAVNGLLTPKNS+LMITHY+RLL++IKPT IHIME+GRIIKTGD
Sbjct: 262 DEIDSGLDVDALQDVAKAVNGLLTPKNSVLMITHYQRLLDYIKPTLIHIMENGRIIKTGD 321

Query: 308 ASIATVLEEGGYKAISG 324
            S+A +LE+ GYKAISG
Sbjct: 322 NSLAKLLEKEGYKAISG 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537227|gb|AAM61568.1| putative ABC transporter ATPase [Arabidopsis thaliana]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/257 (80%), Positives = 237/257 (92%)

Query: 68  DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
           D  D    PLL+V  L AVIAES+QEILKGVNL+V EGEVHA+MGKNGSGKST SKVLVG
Sbjct: 82  DRDDVGRIPLLEVRDLRAVIAESRQEILKGVNLVVYEGEVHAVMGKNGSGKSTFSKVLVG 141

Query: 128 HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187
           HPDYEVT GS+VFKG+NLL+MEPE+RSLAGLFMSFQSPVEIPGV+N+DFL+MA+NAR+RK
Sbjct: 142 HPDYEVTGGSIVFKGQNLLDMEPEDRSLAGLFMSFQSPVEIPGVSNMDFLNMAFNARKRK 201

Query: 188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAIL 247
           LGQPE+ PI+FY++L  KLE ++MKTDFLNRNVNEGFSGGERKRNEILQLAVLGA+LAIL
Sbjct: 202 LGQPELDPIQFYSHLVSKLEVVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAELAIL 261

Query: 248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           DEIDSGLDVDAL+DVAKAVNGLLTPKNS+LMITHY+RLL++IKPT IHIME+GRIIKTGD
Sbjct: 262 DEIDSGLDVDALQDVAKAVNGLLTPKNSVLMITHYQRLLDYIKPTLIHIMENGRIIKTGD 321

Query: 308 ASIATVLEEGGYKAISG 324
            S+A +LE+ GYKAISG
Sbjct: 322 NSLAKLLEKEGYKAISG 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833848|ref|XP_002884806.1| ATNAP7 [Arabidopsis lyrata subsp. lyrata] gi|297330646|gb|EFH61065.1| ATNAP7 [Arabidopsis lyrata subsp. lyrata]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/249 (82%), Positives = 235/249 (94%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
           PLL+V  L AVIAES+QEILKGVNL++ EGEVHA+MGKNGSGKST SKVLVGHPDYEVT 
Sbjct: 90  PLLEVRDLRAVIAESRQEILKGVNLVIYEGEVHAVMGKNGSGKSTFSKVLVGHPDYEVTG 149

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
           GS+VFKG+NLL+MEPE+RSLAGLFMSFQSPVEIPGV+N+DFL+MA+NAR+RKLGQPE+ P
Sbjct: 150 GSIVFKGQNLLDMEPEDRSLAGLFMSFQSPVEIPGVSNMDFLNMAFNARKRKLGQPELDP 209

Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
           I+FY++L  KLE ++MKTDFLNRNVNEGFSGGERKRNEILQLAVLGA+LAILDEIDSGLD
Sbjct: 210 IQFYSHLVSKLEVVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAELAILDEIDSGLD 269

Query: 256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE 315
           VDAL+DVAKAVNGLLTPKNS+LMITHY+RLL++IKPT IHIME+GRIIKTGD S+A +LE
Sbjct: 270 VDALQDVAKAVNGLLTPKNSVLMITHYQRLLDYIKPTLIHIMENGRIIKTGDNSLAKLLE 329

Query: 316 EGGYKAISG 324
           + GYKAISG
Sbjct: 330 KEGYKAISG 338

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116792273|gb|ABK26299.1| unknown [Picea sitchensis]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/314 (65%), Positives = 246/314 (78%), Gaps = 11/314 (3%)

Query: 15  SFKFSNLPSKSHVFTLPALPLLCRR-----SNYHRHHLSLNRVTAALSAVDSPLKSSSDG 69
           S   S+LP  S V T       C R       + R   S+    AA +AVD   +++S  
Sbjct: 23  SSSVSSLPRISCVVTRK---WRCWRMGQSQPTHTRKKNSMQLPRAAAAAVDIEPQNASTS 79

Query: 70  QDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP 129
               S  LL+V GLTAV+ ES+QEILKG++L++++GEVHAIMGKNGSGKST SKVLVGHP
Sbjct: 80  N---SNVLLEVKGLTAVVTESRQEILKGIDLIIHQGEVHAIMGKNGSGKSTFSKVLVGHP 136

Query: 130 DYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG 189
           DYEVT G+V+FKGENLL+ EPE R  +GLFMSFQSPVEIPGV+N+DFL MA NARR  LG
Sbjct: 137 DYEVTGGTVIFKGENLLDKEPEVRCHSGLFMSFQSPVEIPGVSNMDFLRMACNARRSTLG 196

Query: 190 QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDE 249
             E+GP+EFY +L PKL  L+M   FL+RNVNEGFSGGE+KRNEILQLAVL ADLAILDE
Sbjct: 197 LTELGPLEFYGFLSPKLAMLNMDPKFLDRNVNEGFSGGEKKRNEILQLAVLEADLAILDE 256

Query: 250 IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
           IDSGLDVDAL+DVAKAVNGLLT KN++LMITHY+RLL+ IKPT++HIME+GRI+KTG+AS
Sbjct: 257 IDSGLDVDALQDVAKAVNGLLTTKNAVLMITHYQRLLDSIKPTYVHIMENGRIVKTGNAS 316

Query: 310 IATVLEEGGYKAIS 323
           +A  LEEGGY+AI+
Sbjct: 317 LAKQLEEGGYRAIA 330

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520651|ref|XP_003630614.1| ABC transporter I family member [Medicago truncatula] gi|355524636|gb|AET05090.1| ABC transporter I family member [Medicago truncatula]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/248 (74%), Positives = 214/248 (86%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
           PLLQV  L A I ES  EIL+GVNL +N GE+HAIMGKNGSGKST +KVLVGHPDYEVT 
Sbjct: 35  PLLQVNDLRAKIVESNAEILRGVNLTINRGEIHAIMGKNGSGKSTFAKVLVGHPDYEVTS 94

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
           GSVVFKGENLLEMEPEER+L GLFMSFQSPV IPGV+N  FL MAYNARR+KLG PE+GP
Sbjct: 95  GSVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLVMAYNARRKKLGLPELGP 154

Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
           +E ++YL  KL+ ++MK DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD
Sbjct: 155 LECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 214

Query: 256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE 315
           VDALRDVA AVN +LTP+NSLLMITHYRR+L+ +KP+ +H+M++G+I +TGD S+   +E
Sbjct: 215 VDALRDVASAVNKILTPENSLLMITHYRRILDLLKPSHVHVMDNGKIARTGDLSMVDAIE 274

Query: 316 EGGYKAIS 323
             GY+ +S
Sbjct: 275 ADGYEPVS 282

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839171|emb|CAN61388.1| hypothetical protein VITISV_019393 [Vitis vinifera]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/213 (85%), Positives = 201/213 (94%)

Query: 111 MGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG 170
           MGKNGSGKST SKVLVGHPDYEVT G+VVFKGENLL+M+PEER+LAGLFMSFQSPVEIPG
Sbjct: 1   MGKNGSGKSTFSKVLVGHPDYEVTGGTVVFKGENLLDMDPEERALAGLFMSFQSPVEIPG 60

Query: 171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230
           V+NIDFL+MAYNA+RRKLG PE+GPIEFY Y+ PKL+ ++MK DFLNRNVNEGFSGGERK
Sbjct: 61  VSNIDFLNMAYNAQRRKLGLPELGPIEFYGYISPKLDIVNMKIDFLNRNVNEGFSGGERK 120

Query: 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK 290
           RNEILQLAVLGADLAILDEIDSGLD+DAL+DVAKAVNGLLTP NS+L+ITHY RLLEFIK
Sbjct: 121 RNEILQLAVLGADLAILDEIDSGLDIDALKDVAKAVNGLLTPVNSVLIITHYLRLLEFIK 180

Query: 291 PTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS 323
           PT+IH+MEDGRI+KTGD SIA VLEE GYKAIS
Sbjct: 181 PTYIHVMEDGRIVKTGDISIAKVLEEEGYKAIS 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2075880	338	NAP7 "non-intrinsic ABC protei	0.935	0.899	0.714	2.6e-109
TIGR_CMR|SPO_2018	251	SPO_2018 "FeS assembly ATPase	0.756	0.980	0.536	6e-64
TIGR_CMR|CBU_1359	244	CBU_1359 "ABC transporter, ATP	0.741	0.987	0.518	5.4e-63
GENEDB_PFALCIPARUM|PF14_0133	347	PF14_0133 "ATP-dependent trans	0.796	0.746	0.461	7.9e-62
UNIPROTKB|Q8ILW0	347	PF14_0133 "SufC ATPase, putati	0.796	0.746	0.461	7.9e-62
UNIPROTKB|P77499	248	sufC "SufC component of SufBCD	0.716	0.939	0.542	2.7e-61
TIGR_CMR|BA_5217	261	BA_5217 "FeS assembly ATPase S	0.695	0.865	0.557	2.7e-61
UNIPROTKB|O53154	266	Rv1463 "PROBABLE CONSERVED ATP	0.713	0.872	0.460	5.8e-50
TIGR_CMR|DET_0815	251	DET_0815 "FeS assembly ATPase	0.704	0.912	0.353	9.5e-34
UNIPROTKB|P77279	225	ybbL "predicted transporter su	0.596	0.862	0.284	1.9e-14

TAIR|locus:2075880 NAP7 "non-intrinsic ABC protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 223/312 (71%), Positives = 266/312 (85%)

Query:    21 LPSKS-HVFTLPALPLLCR-RSNYHRHHL--SLNR-VTAALSAVDSPLKSSS--DGQDEK 73
             LP++   + T P+  LLC  R+N     +  +  R V  + S+V S + S S  + +D+ 
Sbjct:    27 LPTQRVRLGTSPSRVLLCNLRANSAAAPILRTTRRSVIVSASSVSSAVDSDSLVEDRDDV 86

Query:    74 SQ-PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE 132
              + PLL+V  L AVIAES+QEILKGVNL+V EGEVHA+MGKNGSGKST SKVLVGHPDYE
Sbjct:    87 GRIPLLEVRDLRAVIAESRQEILKGVNLVVYEGEVHAVMGKNGSGKSTFSKVLVGHPDYE 146

Query:   133 VTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
             VT GS+VFKG+NLL+MEPE+RSLAGLFMSFQSPVEIPGV+N+DFL+MA+NAR+RKLGQPE
Sbjct:   147 VTGGSIVFKGQNLLDMEPEDRSLAGLFMSFQSPVEIPGVSNMDFLNMAFNARKRKLGQPE 206

Query:   193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
             + PI+FY++L  KLE ++MKTDFLNRNVNEGFSGGERKRNEILQLAVLGA+LAILDEIDS
Sbjct:   207 LDPIQFYSHLVSKLEVVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAELAILDEIDS 266

Query:   253 GLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIAT 312
             GLDVDAL+DVAKAVNGLLTPKNS+LMITHY+RLL++IKPT IHIME+GRIIKTGD S+A 
Sbjct:   267 GLDVDALQDVAKAVNGLLTPKNSVLMITHYQRLLDYIKPTLIHIMENGRIIKTGDNSLAK 326

Query:   313 VLEEGGYKAISG 324
             +LE+ GYKAISG
Sbjct:   327 LLEKEGYKAISG 338

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0016226 "iron-sulfur cluster assembly" evidence=IGI;RCA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TIGR_CMR|SPO_2018 SPO_2018 "FeS assembly ATPase SufC" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 132/246 (53%), Positives = 168/246 (68%)

Query:    77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
             +L++  L   + E  ++ILKGV+L V  G+VHAIMG NGSGKSTLS VL G   YEVTEG
Sbjct:     1 MLEIKNLHVKLEEEDKQILKGVDLTVEAGKVHAIMGPNGSGKSTLSYVLSGRDGYEVTEG 60

Query:   137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
                  G +LLEMEPEER+ AGLF++FQ PVEIPGV N+ FL  A NA+R+  G+ E+   
Sbjct:    61 GATLSGADLLEMEPEERAAAGLFLAFQYPVEIPGVGNMTFLRTAVNAQRKARGEEELSAA 120

Query:   197 EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
             +F   +  K + L +  D L R VN GFSGGE+KRNEILQ+A+L   + ILDE DSGLDV
Sbjct:   121 DFLKEVRAKAKALKIDADMLKRPVNVGFSGGEKKRNEILQMAMLEPKMCILDETDSGLDV 180

Query:   257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316
             DA++ VA+ VN L       L+ITHY+RLL+ IKP  +HIM DGRI+K+G   +A  +E 
Sbjct:   181 DAMKLVAEGVNALRDAGRGFLVITHYQRLLDHIKPDVVHIMADGRIVKSGGPELALEVEN 240

Query:   317 GGYKAI 322
              GY  I
Sbjct:   241 NGYADI 246

GO:0005524 "ATP binding" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

TIGR_CMR|CBU_1359 CBU_1359 "ABC transporter, ATP-binding protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 126/243 (51%), Positives = 172/243 (70%)

Query:    77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
             +L +  L A +  +  +IL+GVNL +N GEVHAIMG NGSGKSTL+ VL G  DY + +G
Sbjct:     1 MLTIKNLHASVHNN--QILRGVNLTINAGEVHAIMGPNGSGKSTLASVLAGREDYAIVDG 58

Query:   137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
              V +  E+L E+ PE+R+  GLF++FQ PVEIPGVNN+ FL  A N+ R+  G+     I
Sbjct:    59 DVRYFDEDLFELSPEDRAAKGLFLAFQYPVEIPGVNNLYFLKTAVNSIRKTRGEAPFDAI 118

Query:   197 EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
             +    +  KL  + M   FL R+VNEGFSGGE+KRNEILQ+ +L   LAILDE DSGLD+
Sbjct:   119 DLMGLVKEKLALVDMDDKFLKRSVNEGFSGGEKKRNEILQMLMLDPRLAILDETDSGLDI 178

Query:   257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316
             DAL+ VAK VN L   + ++L++THY+RLL++IKP F+H++ +GRI+ +GD S+A  LE+
Sbjct:   179 DALQTVAKGVNSLRNKERAILLVTHYQRLLDYIKPDFVHVLVNGRIVLSGDQSLALELEK 238

Query:   317 GGY 319
              GY
Sbjct:   239 KGY 241

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GENEDB_PFALCIPARUM|PF14_0133 PF14_0133 "ATP-dependent transporter, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 120/260 (46%), Positives = 177/260 (68%)

Query:    60 DSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKS 119
             +S + +  +G D K+ PLL++  L A+  E ++EILKG+NL +  GE H IMG+NGSGKS
Sbjct:    83 ESKIITEGEGWD-KTHPLLEIKDLHAIEIEGEKEILKGINLEIYLGEKHTIMGRNGSGKS 141

Query:   120 TLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHM 179
             TL+KV+ GHP Y++T+G + +KG +L+ +    RSL G+F++FQ PVE+P V N +FL  
Sbjct:   142 TLAKVIAGHPYYKITKGIIKYKGLDLINLPVNVRSLCGIFLAFQYPVELPMVKNNEFLRA 201

Query:   180 AYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239
             A N+ RR   + EI   EF   +  +++++ + ++FL+R VN GFSGGE+KRNEILQ+ +
Sbjct:   202 ALNSHRRHRNEEEISVSEFNLMMIEEIKKVGLSSEFLDRPVNYGFSGGEKKRNEILQMLI 261

Query:   240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299
             L     ILDE DSGLDVD+ +  +  +       NS L++THY++LLE +KP FIHIM  
Sbjct:   262 LKPTFCILDETDSGLDVDSFKLTSNVITNFSNDNNSFLIVTHYKKLLELLKPNFIHIMHQ 321

Query:   300 GRIIKTGDASIATVLEEGGY 319
             G+II++GD S+   +E  GY
Sbjct:   322 GKIIESGDFSLVDKIENKGY 341

GO:0020011 "apicoplast" evidence=IDA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

UNIPROTKB|Q8ILW0 PF14_0133 "SufC ATPase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 120/260 (46%), Positives = 177/260 (68%)

Query:    60 DSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKS 119
             +S + +  +G D K+ PLL++  L A+  E ++EILKG+NL +  GE H IMG+NGSGKS
Sbjct:    83 ESKIITEGEGWD-KTHPLLEIKDLHAIEIEGEKEILKGINLEIYLGEKHTIMGRNGSGKS 141

Query:   120 TLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHM 179
             TL+KV+ GHP Y++T+G + +KG +L+ +    RSL G+F++FQ PVE+P V N +FL  
Sbjct:   142 TLAKVIAGHPYYKITKGIIKYKGLDLINLPVNVRSLCGIFLAFQYPVELPMVKNNEFLRA 201

Query:   180 AYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239
             A N+ RR   + EI   EF   +  +++++ + ++FL+R VN GFSGGE+KRNEILQ+ +
Sbjct:   202 ALNSHRRHRNEEEISVSEFNLMMIEEIKKVGLSSEFLDRPVNYGFSGGEKKRNEILQMLI 261

Query:   240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299
             L     ILDE DSGLDVD+ +  +  +       NS L++THY++LLE +KP FIHIM  
Sbjct:   262 LKPTFCILDETDSGLDVDSFKLTSNVITNFSNDNNSFLIVTHYKKLLELLKPNFIHIMHQ 321

Query:   300 GRIIKTGDASIATVLEEGGY 319
             G+II++GD S+   +E  GY
Sbjct:   322 GKIIESGDFSLVDKIENKGY 341

GO:0020011 "apicoplast" evidence=IDA

UNIPROTKB|P77499 sufC "SufC component of SufBCD Fe-S cluster scaffold complex" [Escherichia coli K-12 (taxid:83333)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 127/234 (54%), Positives = 166/234 (70%)

Query:    86 VIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145
             V  E K  IL+G++L V+ GEVHAIMG NGSGKSTLS  L G  DYEVT G+V FKG++L
Sbjct:     9 VSVEDKA-ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67

Query:   146 LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
             L + PE+R+  G+FM+FQ PVEIPGV+N  FL  A NA R   GQ  +   +F   +  K
Sbjct:    68 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 127

Query:   206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
             +  L M  D L R+VN GFSGGE+KRN+ILQ+AVL  +L ILDE DSGLD+DAL+ VA  
Sbjct:   128 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187

Query:   266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
             VN L   K S +++THY+R+L++IKP ++H++  GRI+K+GD ++   LEE GY
Sbjct:   188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGY 241

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|BA_5217 BA_5217 "FeS assembly ATPase SufC" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 127/228 (55%), Positives = 164/228 (71%)

Query:    92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
             +EILKGVNL V  GE+HAIMG NG+GKSTLS  ++GHP YEVTEGS++  GE++LEME +
Sbjct:    18 KEILKGVNLEVKGGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTEGSIIIDGEDVLEMEVD 77

Query:   152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
             ER+ AGLF++ Q P EI GV N DFL  A NARR + G  EI  ++F   L   +E L M
Sbjct:    78 ERAQAGLFLAMQYPSEISGVTNADFLRSAINARREE-GD-EISLMKFIRKLDKNMEFLEM 135

Query:   212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
               +   R +NEGFSGGE+KRNEILQL ++   +AILDEIDSGLD+DAL+ V+K +N +  
Sbjct:   136 DPEMAQRYLNEGFSGGEKKRNEILQLMMIEPKIAILDEIDSGLDIDALKVVSKGINEMRG 195

Query:   272 PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
              +   LMITHY+RLL +I P F+H+M +GRI+K+G   +A  LE  GY
Sbjct:   196 EEFGCLMITHYQRLLNYITPDFVHVMMNGRIVKSGGPELAQRLEAEGY 243

GO:0005524 "ATP binding" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

UNIPROTKB|O53154 Rv1463 "PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 110/239 (46%), Positives = 156/239 (65%)

Query:    88 AESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145
             AE+  EI  L+GV+L V  GE HA+MG NGSGKSTLS  + GHP Y VT G++   G ++
Sbjct:    17 AEADHEIPILRGVDLTVKSGETHALMGPNGSGKSTLSYAIAGHPKYHVTSGTITLDGADV 76

Query:   146 LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
             L M  +ER+ AGLF++ Q PVE+PGV+  +FL  A  A R +   P++    +   +   
Sbjct:    77 LAMSIDERARAGLFLAMQYPVEVPGVSMSNFLRSAATAIRGE--PPKLR--HWVKEVKAA 132

Query:   206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
             +  L +   F  R+VNEGFSGGE+KR+EILQL +L   +AILDE DSGLDVDALR V++ 
Sbjct:   133 MAALDIDPAFAERSVNEGFSGGEKKRHEILQLELLKPKIAILDETDSGLDVDALRVVSEG 192

Query:   266 VNGLLTPKNS-LLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS 323
             VN     ++  +L+ITHY R+L +I P ++H+   GRI+++G + +A  L++ GY   S
Sbjct:   193 VNRYAESQHGGILLITHYTRILRYIHPEYVHVFVGGRIVESGGSELADELDQNGYVRFS 251

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|DET_0815 DET_0815 "FeS assembly ATPase SufC, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 89/252 (35%), Positives = 145/252 (57%)

Query:    77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
             LL+V  L   +    +EIL GV+L++  GE H I G NGSGK+TL   L+G P Y++T+G
Sbjct:     6 LLEVKDLHVEV--DGREILHGVDLVLPAGETHVIFGPNGSGKTTLLMTLMGFPRYKITQG 63

Query:   137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
              ++F G+++  +  +ER+  G+ +SFQ P   P V  +    M  ++ R K    + G I
Sbjct:    64 QLIFNGKDITHVPIDERARLGIGISFQRP---PVVRGVKLREMVRSSLRTK---EDSGLI 117

Query:   197 EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
             +       +L + +  TDFL R+VN GFSGGE KR+E+LQL   G D+ +LDE +SG+D+
Sbjct:   118 D-------ELAKKAHMTDFLERDVNHGFSGGEIKRSELLQLLAQGPDMVLLDEPESGVDL 170

Query:   257 DALRDVAKAVNGLLTPKNSL-------LMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA- 308
             + +  +   +N LL  K+ +       L+ITH   +L+++     +++  GRI  TGD  
Sbjct:   171 ENIALIGSLINDLLEKKHPIRERKRGGLVITHTGHILDYVNARTGYVLCHGRINCTGDPR 230

Query:   309 SIATVLEEGGYK 320
              +   +++ GY+
Sbjct:   231 DMLETIKQNGYQ 242

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

UNIPROTKB|P77279 ybbL "predicted transporter subunit: ATP-binding component of ABC superfamily" [Escherichia coli K-12 (taxid:83333)]

 Score = 188 (71.2 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 60/211 (28%), Positives = 108/211 (51%)

Query:    72 EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY 131
             +++ PLLQ+  +  +  ++K  IL  +N  +  GE   I G +G GKSTL K++      
Sbjct:     2 QENSPLLQLQNVGYLAGDAK--ILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASL--I 57

Query:   132 EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP 191
               T G+++F+GE++  ++PE       + + Q+P  + G    D L   +  R R   QP
Sbjct:    58 SPTSGTLLFEGEDVSTLKPEIYRQQVSYCA-QTPT-LFGDTVYDNLIFPWQIRNR---QP 112

Query:   192 EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251
             +  P  F  +L    ER ++    L +N+ E  SGGE++R  +++       + +LDEI 
Sbjct:   113 D--PAIFLDFL----ERFALPDSILTKNIAE-LSGGEKQRISLIRNLQFMPKVLLLDEIT 165

Query:   252 SGLDVDALRDVAKAVNGLLTPKN-SLLMITH 281
             S LD     +V + ++  +  +N ++L +TH
Sbjct:   166 SALDESNKHNVNEMIHRYVREQNIAVLWVTH 196

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O78474	ABCX_GUITH	No assigned EC number	0.5551	0.7476	0.9604	yes	no
P80866	V296_BACSU	No assigned EC number	0.5238	0.7046	0.8773	yes	no
Q9CAF5	AB6I_ARATH	No assigned EC number	0.8093	0.7907	0.7603	yes	no
P0CZ43	Y208_STRPQ	No assigned EC number	0.5086	0.7076	0.8984	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00080101	white-brown-complex ABC transporter family (328 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_IV000050	hypothetical protein (554 aa)	•		•	•	•	•	•		0.997
	gw1.29.403.1	hypothetical protein (456 aa)	•		•	•	•		•		0.976
	gw1.IX.3183.1	selenocysteine lyase/cysteine desulfurase (EC-2.8.1.7) (468 aa)	•		•	•			•		0.971
	estExt_fgenesh4_pg.C_1180029	hypothetical protein (259 aa)	•		•	•	•	•	•		0.949
	eugene3.00150565	SubName- Full=Putative uncharacterized protein; (165 aa)	•						•		0.770
	estExt_Genewise1_v1.C_LG_VII0255	cysteine desulfurase/transaminase (EC-2.8.1.7) (452 aa)	•						•		0.765
	estExt_fgenesh4_pm.C_LG_XII0286	SubName- Full=Putative uncharacterized protein; (163 aa)	•						•		0.756
	gw1.I.2355.1	hypothetical protein (120 aa)	•						•		0.620
	DHQS6	SubName- Full=Putative uncharacterized protein; (375 aa)	•								0.517
	gw1.2025.1.1	hypothetical protein (223 aa)							•		0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	1e-135
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-123
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-121
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-111
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	1e-99
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-25
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-25
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	4e-25
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-22
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	3e-22
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-20
COG4987	573	COG4987, CydC, ABC-type transport system involved	2e-20
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-20
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	4e-20
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	9e-20
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-18
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-18
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	7e-18
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-17
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	4e-17
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	6e-17
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	8e-17
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	1e-16
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	1e-16
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-16
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-16
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-15
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-15
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-15
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	2e-15
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-15
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	3e-15
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-15
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-15
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-15
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	6e-15
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	8e-15
COG4988	559	COG4988, CydD, ABC-type transport system involved	3e-14
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	3e-14
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	4e-14
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	4e-14
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	8e-14
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-13
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-13
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-13
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-13
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-13
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-13
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-13
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	4e-13
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	4e-13
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	4e-13
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	6e-13
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	6e-13
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	7e-13
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	7e-13
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	8e-13
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	9e-13
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	1e-12
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-12
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-12
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-12
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-12
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	4e-12
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	5e-12
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	5e-12
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	6e-12
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	8e-12
pfam00005	119	pfam00005, ABC_tran, ABC transporter	1e-11
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-11
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-11
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-11
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-11
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-11
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-11
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-11
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	2e-11
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-11
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-11
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	3e-11
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	4e-11
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	4e-11
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	4e-11
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-11
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	6e-11
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	7e-11
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	8e-11
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	9e-11
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-10
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-10
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-10
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-10
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-10
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-10
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	4e-10
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-10
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	7e-10
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	7e-10
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	8e-10
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	8e-10
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	8e-10
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	9e-10
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	1e-09
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-09
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	1e-09
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-09
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-09
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-09
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-09
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-09
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-09
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-09
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	3e-09
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	4e-09
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	4e-09
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	4e-09
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	5e-09
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	6e-09
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	7e-09
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	9e-09
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-08
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-08
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-08
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	1e-08
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-08
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-08
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-08
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	2e-08
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-08
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	2e-08
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	2e-08
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	3e-08
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	3e-08
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-08
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	4e-08
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	4e-08
COG5265	497	COG5265, ATM1, ABC-type transport system involved	5e-08
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	7e-08
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	7e-08
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	8e-08
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	8e-08
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	9e-08
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	9e-08
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	1e-07
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-07
COG4133	209	COG4133, CcmA, ABC-type transport system involved	1e-07
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-07
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-07
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-07
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-07
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	3e-07
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-07
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	3e-07
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-07
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	5e-07
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	5e-07
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	5e-07
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	5e-07
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	5e-07
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	5e-07
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	5e-07
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	6e-07
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	6e-07
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	6e-07
COG4598	256	COG4598, HisP, ABC-type histidine transport system	8e-07
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	9e-07
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	1e-06
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-06
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-06
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	1e-06
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-06
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	2e-06
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	2e-06
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	2e-06
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	2e-06
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-06
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	3e-06
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	3e-06
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	3e-06
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	3e-06
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-06
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	4e-06
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	4e-06
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	5e-06
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	5e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-06
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	6e-06
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	6e-06
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	6e-06
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	6e-06
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	6e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	8e-06
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	9e-06
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	9e-06
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	9e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	9e-06
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	9e-06
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	1e-05
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	1e-05
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	1e-05
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-05
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	1e-05
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	2e-05
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-05
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	2e-05
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	2e-05
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-05
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-05
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-05
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	3e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	3e-05
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	3e-05
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	3e-05
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	4e-05
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	4e-05
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	4e-05
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	4e-05
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-05
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	4e-05
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	4e-05
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	5e-05
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	6e-05
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	7e-05
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	7e-05
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	8e-05
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	9e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-04
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-04
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	1e-04
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-04
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	1e-04
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-04
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	1e-04
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	1e-04
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	1e-04
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-04
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-04
pfam13304	256	pfam13304, AAA_21, AAA domain	2e-04
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-04
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	2e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-04
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	3e-04
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-04
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	3e-04
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	3e-04
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	3e-04
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	3e-04
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-04
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	3e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-04
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	4e-04
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	4e-04
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	4e-04
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	4e-04
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	4e-04
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	4e-04
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	4e-04
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	5e-04
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	5e-04
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	6e-04
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	7e-04
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	8e-04
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	8e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	0.001
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	0.001
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	0.001
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	0.001
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	0.001
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	0.002
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	0.002
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	0.002
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	0.002
pfam13207	114	pfam13207, AAA_17, AAA domain	0.002
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	0.002
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	0.002
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	0.003
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	0.003
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	0.003
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	0.004
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	0.004

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score =  383 bits (986), Expect = e-135
 Identities = 142/250 (56%), Positives = 205/250 (82%), Gaps = 2/250 (0%)

Query: 73  KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE 132
           K++P+L++  L A + E+  EILKG+NL +N+GE+HAIMG NGSGKSTLSKV+ GHP Y+
Sbjct: 3   KNKPILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK 60

Query: 133 VTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
           + EG ++FKGE++L++EPEER+  G+F++FQ P+EIPGV+N DFL +AYN++R+  G PE
Sbjct: 61  ILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPE 120

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
           + P+EF   +  KL+ + M   FL+RNVNEGFSGGE+KRNEILQ+A+L ++LAILDE DS
Sbjct: 121 LDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDS 180

Query: 253 GLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIAT 312
           GLD+DAL+ +A+ +N L+T +NS+++ITHY+RLL++IKP ++H+M++G+IIKTGDA +A 
Sbjct: 181 GLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAK 240

Query: 313 VLEEGGYKAI 322
            LE+ GY  +
Sbjct: 241 ELEKKGYDWL 250

Length = 252

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score =  352 bits (905), Expect = e-123
 Identities = 138/248 (55%), Positives = 176/248 (70%), Gaps = 5/248 (2%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
           +L++  L   +   K+EILKGVNL V EGEVHAIMG NGSGKSTL+  ++GHP YEVTEG
Sbjct: 3   MLEIKDLHVEVEG-KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG 61

Query: 137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
            ++F GE++LE+ P+ER+ AG+F++FQ PVEIPGV N DFL  A NARR   G       
Sbjct: 62  EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILP---- 117

Query: 197 EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
           EF   L  K E L +  +FL R VNEGFSGGE+KRNEILQL +L   LAILDE DSGLD+
Sbjct: 118 EFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177

Query: 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316
           DAL+ VA+ +N L      +L+ITHY+RLL++IKP  +H++ DGRI+K+GD  +A  LEE
Sbjct: 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEE 237

Query: 317 GGYKAISG 324
            GY  +  
Sbjct: 238 KGYDWLKE 245

Length = 251

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score =  347 bits (892), Expect = e-121
 Identities = 141/245 (57%), Positives = 186/245 (75%), Gaps = 2/245 (0%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L++  L   + +  +EILKGVNL V +GE+HAIMG NGSGKSTLSK + GHP YEVT G+
Sbjct: 1   LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGT 58

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
           ++FKG++LLE+EP+ER+ AGLF++FQ P EIPGV+N++FL  A NARR   G+  +  ++
Sbjct: 59  ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD 118

Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257
           F   L  KL  L M  +FLNR+VNEGFSGGE+KRNEILQ+A+L   LAILDEIDSGLD+D
Sbjct: 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178

Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317
           AL+ VA+ +N L  P  S L+ITHY+RLL +IKP ++H++ DGRI+K+GD  +A  LEE 
Sbjct: 179 ALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELEEK 238

Query: 318 GYKAI 322
           GY  +
Sbjct: 239 GYDWV 243

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score =  319 bits (821), Expect = e-111
 Identities = 120/242 (49%), Positives = 158/242 (65%), Gaps = 42/242 (17%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L++  L   +    +EILKGVNL + +GEVHA+MG NGSGKSTL+K ++GHP YEVTEG 
Sbjct: 1   LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE 58

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
           ++FKGE++ ++ PEER+  G+F++FQ P EIPGV N DFL                    
Sbjct: 59  ILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL-------------------- 98

Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257
                               R VNEGFSGGE+KRNEILQL +L  DLAILDE DSGLD+D
Sbjct: 99  --------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138

Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317
           ALR VA+ +N L     S+L+ITHY+RLL++IKP  +H++ DGRI+K+GD  +A  +E+ 
Sbjct: 139 ALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKK 198

Query: 318 GY 319
           GY
Sbjct: 199 GY 200

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score =  293 bits (751), Expect = 1e-99
 Identities = 126/228 (55%), Positives = 164/228 (71%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
           + IL+G+NL V  GEVHAIMG NGSGKSTLS  L G  DYEVT G+V FKG++LLE+ PE
Sbjct: 14  KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
           +R+  G+FM+FQ PVEIPGV+N  FL  A NA R   GQ  +   +F   +  K+  L M
Sbjct: 74  DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM 133

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
             D L R+VN GFSGGE+KRN+ILQ+AVL  +L ILDE DSGLD+DAL+ VA  VN L  
Sbjct: 134 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD 193

Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
            K S +++THY+R+L++IKP ++H++  GRI+K+GD ++   LEE GY
Sbjct: 194 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGY 241

Length = 248

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  102 bits (256), Expect = 3e-25
 Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 26/240 (10%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
            +++V  LT      K   L GV+  V  GE+  ++G NG+GK+TL K+L G    + T 
Sbjct: 3   EVIEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG--LLKPTS 59

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN---NIDFLHMAYNARRRKLGQPE 192
           G ++  G ++++   + R   G ++  Q P   P +    N++F    Y           
Sbjct: 60  GEILVLGYDVVKEPAKVRRRIG-YV-PQEPSLYPELTVRENLEFFARLYG---------- 107

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
           +   E    +   LE   +  D  N+ V    SGG ++R  I    +   +L ILDE  S
Sbjct: 108 LSKEEAEERIEELLELFGL-EDKANKKV-RTLSGGMKQRLSIALALLHDPELLILDEPTS 165

Query: 253 GLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTF--IHIMEDGRIIKTGDAS 309
           GLD ++ R++ + +  L      ++L+ TH    LE  +     + I+ DG+II  G   
Sbjct: 166 GLDPESRREIWELLRELAKEGGVTILLSTHI---LEEAEELCDRVIILNDGKIIAEGTPE 222

Length = 293

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  100 bits (251), Expect = 4e-25
 Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 44/228 (19%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
             +  L  ++L + +GE   I+G NGSGKSTL ++L G      T G V+  G++L ++ 
Sbjct: 12  GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL--LGPTSGEVLVDGKDLTKLS 69

Query: 150 PEERSL-AGLFMSFQSP----------VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF 198
            +E     G  + FQ+P           E+           A+      L + EI     
Sbjct: 70  LKELRRKVG--LVFQNPDDQFFGPTVEEEV-----------AFGLENLGLPEEEIEERVE 116

Query: 199 YAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA---VLGADLAILDEIDSGLD 255
            A     LE + ++    +R+     SGG+++R   + +A    +  D+ +LDE  +GLD
Sbjct: 117 EA-----LELVGLE-GLRDRSPFT-LSGGQKQR---VAIAGVLAMDPDILLLDEPTAGLD 166

Query: 256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF--IHIMEDGR 301
               R++ + +  L     +++++TH    L+ +      + ++EDG+
Sbjct: 167 PAGRRELLELLKKLKAEGKTIIIVTHD---LDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  100 bits (252), Expect = 4e-25
 Identities = 64/251 (25%), Positives = 110/251 (43%), Gaps = 44/251 (17%)

Query: 77  LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
           LL+V  L+          + L  V+  + +GE   ++G++GSGKSTL++ ++G    + T
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--LKPT 58

Query: 135 EGSVVFKGENLLEMEPEERSLAGLFMS--FQSPVEIPGVNNIDFLHMAYNARRR------ 186
            GS++F G++LL++    R +    +   FQ P+             + N R        
Sbjct: 59  SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS------------SLNPRMTIGEQIA 106

Query: 187 ---KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI-LQLAVLGA 242
              ++             +   L  + +  + LNR  +E  SGG+R+R  I   LA L  
Sbjct: 107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHE-LSGGQRQRVAIARALA-LNP 164

Query: 243 DLAILDEIDSGLDV-------DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
            L I DE  S LDV       D L+ + + +        +LL ITH   ++  I    + 
Sbjct: 165 KLLIADEPTSALDVSVQAQILDLLKKLQEELG------LTLLFITHDLGVVAKIA-DRVA 217

Query: 296 IMEDGRIIKTG 306
           +M  G+I++ G
Sbjct: 218 VMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 97.3 bits (243), Expect = 2e-22
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 27/252 (10%)

Query: 73  KSQPLLQVTGLTAVIA--ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--H 128
              PLL+V  LT   A    +   ++ V+  V  GE+  I+G++GSGKSTL+  L+G   
Sbjct: 1   MMSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60

Query: 129 PDYEVTEGSVVFKGENLLEM-EPEERSLAG--LFMSFQSPV----EIPGVNNIDFLHMAY 181
               +T G V+  G +LL + E E R L G  + M FQ P+     +  + +     +  
Sbjct: 61  EGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD----QIRE 116

Query: 182 NARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI-LQLAVL 240
             R    G       E        LE++ +             SGG R+R  I + LA L
Sbjct: 117 ALRLHGKGSRA----EARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALA-L 171

Query: 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPT--FIHIM 297
              L I DE  + LDV     +   +  L      ++L ITH    L  +      + +M
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH---DLGVVAELADRVVVM 228

Query: 298 EDGRIIKTGDAS 309
             G I++TG   
Sbjct: 229 YKGEIVETGPTE 240

Length = 539

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 90.8 bits (226), Expect = 3e-22
 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 64/211 (30%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
            +  L  V+L +  GE+ A++G NGSGKSTL + + G    + T G ++           
Sbjct: 11  GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--LKPTSGEILI---------- 58

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
                                +  D   +     RR++G           Y+ P+L    
Sbjct: 59  ---------------------DGKDIAKLPLEELRRRIG-----------YV-PQL---- 81

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
                         SGG+R+R  + +  +L  DL +LDE  SGLD  +   + + +  L 
Sbjct: 82  --------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA 127

Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301
               +++++TH   L E      + +++DG+
Sbjct: 128 EEGRTVIIVTHDPELAELA-ADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 89.2 bits (222), Expect = 1e-20
 Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 34/248 (13%)

Query: 75  QPLLQVTGLTAVIA--ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPD 130
             LL V  L+ V    +     L  V+L +  GE   I+G++GSGKSTL+++L G   P 
Sbjct: 1   MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60

Query: 131 YEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEI--PGVNNIDFLHMAYNARRRKL 188
                GS++  G+ L   +  +     + M FQ P     P       L           
Sbjct: 61  ----SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK 116

Query: 189 GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILD 248
            Q  I  +         L+++ +   FL+R  +E  SGG+R+R  I +  +    L ILD
Sbjct: 117 SQQRIAEL---------LDQVGLPPSFLDRRPHE-LSGGQRQRIAIARALIPEPKLLILD 166

Query: 249 EIDSGLDV-------DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301
           E  S LDV       + L ++ K          + L I+H   L+E +      +M++G+
Sbjct: 167 EPTSALDVSVQAQILNLLLELKKERG------LTYLFISHDLALVEHMCDRIA-VMDNGQ 219

Query: 302 IIKTGDAS 309
           I++ G   
Sbjct: 220 IVEIGPTE 227

Length = 252

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 78/283 (27%), Positives = 127/283 (44%), Gaps = 29/283 (10%)

Query: 44  RHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVN 103
           +   S  R+   L     P  +  D Q   +   L++  ++      + + LK  NL + 
Sbjct: 305 QVIASARRLNDILDQ--KPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLA 362

Query: 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQ 163
           +GE  AI+G++GSGKSTL ++L G   ++  +GS+   G  +  +  E+     + +  Q
Sbjct: 363 QGEKVAILGRSGSGKSTLLQLLAG--AWDPQQGSITLNGVEIASL-DEQALRETISVLTQ 419

Query: 164 SPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYP-KLERLSMK-TDFLNRN 219
                 G   +N+            +L  P+    E +A L    LE+L     D LN  
Sbjct: 420 RVHLFSGTLRDNL------------RLANPDASDEELWAALQQVGLEKLLESAPDGLNTW 467

Query: 220 VNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL 276
           + EG    SGGER+R  + +  +  A L +LDE   GLD    R V   +      K +L
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGK-TL 526

Query: 277 LMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
           LM+TH  R LE +    I ++++G+II+ G    A +L   G 
Sbjct: 527 LMVTHRLRGLERMDR--IIVLDNGKIIEEGTH--AELLANNGR 565

Length = 573

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 91.1 bits (227), Expect = 3e-20
 Identities = 71/265 (26%), Positives = 115/265 (43%), Gaps = 45/265 (16%)

Query: 70  QDEKSQPLLQVTGLTA-------VIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKST 120
              +++PLL V  L+        +    + E+  +  V+  + EGE   ++G++GSGKST
Sbjct: 273 GPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKST 332

Query: 121 LSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL-AGLFMSFQSPVEIPGVNNIDFLHM 179
           L+++L G      + GS++F G++L     E R L   + M FQ P              
Sbjct: 333 LARILAGL--LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS------------ 378

Query: 180 AYNARRRKLGQPEIGPIEFYAYLYPK---------LERLSMKTDFLNRNVNEGFSGGERK 230
           + N  R  +G     P+  +               LE + +  +FL+R  +E  SGG+R+
Sbjct: 379 SLN-PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE-LSGGQRQ 436

Query: 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-----SLLMITHYRRL 285
           R  I +   L   L ILDE  S LDV     V      LL         + L I+H   +
Sbjct: 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLN----LLKDLQEELGLTYLFISHDLAV 492

Query: 286 LEFIKPTFIHIMEDGRIIKTGDASI 310
           + +I    + +M DGRI++ G    
Sbjct: 493 VRYI-ADRVAVMYDGRIVEEGPTEK 516

Length = 539

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 86.7 bits (216), Expect = 4e-20
 Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 29/239 (12%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L+V  L A   +S  +IL GV+L V EGE+ A++G+NG+GK+TL K ++G        GS
Sbjct: 1   LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGS 56

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
           + F G ++  + P ER+ AG+    +     P +   + L +   ARRR   +  +    
Sbjct: 57  IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE--R 114

Query: 198 FYAYLYPKL-ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV-----LGADLAILDEID 251
            Y  L+P+L ER       L        SGGE++      LA+         L +LDE  
Sbjct: 115 VYE-LFPRLKERRKQLAGTL--------SGGEQQ-----MLAIARALMSRPKLLLLDEPS 160

Query: 252 SGLDVDALRDVAKAVNGLLTPKNSLLMITHY-RRLLEFIKPTFIHIMEDGRIIKTGDAS 309
            GL    + ++ +A+  L     ++L++    R  LE       +++E GR++  G A+
Sbjct: 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIA--DRAYVLERGRVVLEGTAA 217

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 86.9 bits (216), Expect = 9e-20
 Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 69/249 (27%)

Query: 74  SQPLLQVTGLT---AVIAESKQE----ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV 126
            +PLL+V  L     V     ++     + GV+  + EGE   ++G++G GKSTL ++++
Sbjct: 1   MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60

Query: 127 GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186
           G    E T G ++F+G+++ ++  EER                                 
Sbjct: 61  GL--EEPTSGEILFEGKDITKLSKEER--------------------------------- 85

Query: 187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAI 246
                     E    L   LE++ +  +FL R  +E  SGG+R+R  I +   L   L +
Sbjct: 86  ---------RERVLEL---LEKVGLPEEFLYRYPHE-LSGGQRQRIGIARALALNPKLIV 132

Query: 247 LDEIDSGLDV-------DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED 299
            DE  S LDV       + L+D+ + +        + L I+H   ++ +I    I +M  
Sbjct: 133 ADEPVSALDVSVQAQILNLLKDLQEELG------LTYLFISHDLSVVRYIS-DRIAVMYL 185

Query: 300 GRIIKTGDA 308
           G+I++ G  
Sbjct: 186 GKIVEIGPT 194

Length = 268

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 82.9 bits (206), Expect = 1e-18
 Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 21/233 (9%)

Query: 82  GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK 141
           GL A+           V+  V  GE+H ++G NG+GK+TL  ++ G      T GSV+F 
Sbjct: 12  GLVAL---------DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--LRPTSGSVLFD 60

Query: 142 GENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK---LGQPEIGPIEF 198
           GE++  + P E +  G+  +FQ P   P +  ++ + +A  AR      L +      E 
Sbjct: 61  GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA 120

Query: 199 YAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
                  LER+ +  D  +R      S G+++R EI +       L +LDE  +GL+ + 
Sbjct: 121 RERAEELLERVGL-ADLADRPA-GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178

Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP--TFIHIMEDGRIIKTGDAS 309
             ++A+ +  L     ++L++ H    ++ +      + +++ GR+I  G   
Sbjct: 179 TEELAELIRELRERGITVLLVEH---DMDVVMSLADRVTVLDQGRVIAEGTPD 228

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 84.5 bits (210), Expect = 3e-18
 Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 42/254 (16%)

Query: 70  QDEKSQPLLQVTGLT----AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL 125
               + PLL++ G++     V A      L GV+L V  GEVHA++G+NG+GKSTL K+L
Sbjct: 1   MTMSTPPLLELRGISKSFGGVKA------LDGVSLTVRPGEVHALLGENGAGKSTLMKIL 54

Query: 126 VGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN---NIDFLHMAYN 182
            G   Y    G ++  G+ +    P +   AG+    Q    +P ++   NI FL     
Sbjct: 55  SG--VYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENI-FLG---R 108

Query: 183 ARRRKLGQPEIGPIEFYAYLYPK----LERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
              R+ G      +     +  +    L RL +  D  +  V +  S  +R+  EI +  
Sbjct: 109 EPTRRFG------LIDRKAMRRRARELLARLGLDID-PDTLVGD-LSIAQRQMVEIARAL 160

Query: 239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF----- 293
              A + ILDE  + L V     +   +  L     +++ I+H  RL E     F     
Sbjct: 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH--RLDEV----FEIADR 214

Query: 294 IHIMEDGRIIKTGD 307
           I ++ DGR++ T  
Sbjct: 215 ITVLRDGRVVGTRP 228

Length = 500

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 81.1 bits (201), Expect = 7e-18
 Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 24/220 (10%)

Query: 74  SQPLLQVTGLT----AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP 129
           + PLL+V GL+     + A      +  V+L V  GE+  ++G NG+GK+TL  ++ G  
Sbjct: 1   TTPLLEVRGLSKRFGGLTA------VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF- 53

Query: 130 DYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG 189
            Y+ + G+V+F+G ++  + P   +  G+  +FQ     PG+  ++ + +  +AR    G
Sbjct: 54  -YKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSG 112

Query: 190 QPEIGPI-----EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
                       E        LE + +  +  +R      S G+++R EI +       L
Sbjct: 113 LLGRPRARKEEREARERARELLEFVGL-GELADRPA-GNLSYGQQRRLEIARALATQPKL 170

Query: 245 AILDEIDSGLDVDALRDVAKAVNGLLTPKN---SLLMITH 281
            +LDE  +GL+ +   ++A+ +  L        ++L+I H
Sbjct: 171 LLLDEPAAGLNPEETEELAELIREL--RDRGGVTILLIEH 208

Length = 250

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 79.8 bits (198), Expect = 2e-17
 Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 39/193 (20%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
            P+L+V  L+A   +   + L+GV+L V  GE+ A++G+NG+GK+TL K ++G       
Sbjct: 1   APMLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV--RPR 56

Query: 135 EGSVVFKGENLLEMEPEERSLAGLFMSFQSP-------VEIPGVNNIDFLHMAYNARRRK 187
            G ++F GE++  + P ER+  G+    +         VE       + L +   ARR K
Sbjct: 57  SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVE-------ENLLLGAYARRDK 109

Query: 188 LGQPEIGPIEFYAYLYPKL-ERLSMKTDFLNRNVNEGFSGGERKRNEILQLA-----VLG 241
             Q E    E Y  L+P+L ER + +   L        SGGE++      LA     +  
Sbjct: 110 EAQ-ERDLEEVYE-LFPRLKERRNQRAGTL--------SGGEQQ-----MLAIARALMSR 154

Query: 242 ADLAILDEIDSGL 254
             L +LDE   GL
Sbjct: 155 PKLLLLDEPSEGL 167

Length = 237

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 22/221 (9%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
             E+LK VNL + +GE   ++G +G GKSTL +++ G    E T G ++  G ++ ++ P
Sbjct: 15  SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--EEPTSGEILIDGRDVTDLPP 72

Query: 151 EERSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
           E+R +A   M FQ+    P   V    + ++A+  + R + + EI        +    + 
Sbjct: 73  EKRGIA---MVFQNYALYPHMTV----YENIAFGLKLRGVPKAEI-----DKRVKEVAKL 120

Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
           L +    LNR   +  SGG+R+R  + +  V    + +LDE  S LD   LR + ++   
Sbjct: 121 LGL-EHLLNRKPLQ-LSGGQRQRVALARALVRKPKVFLLDEPLSNLD-AKLRVLMRSEIK 177

Query: 269 LL--TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
            L      + + +TH +     +    + +M DGRI + G 
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMTLADRIV-VMNDGRIQQVGT 217

Length = 338

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 78.1 bits (193), Expect = 6e-17
 Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 26/223 (11%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
             LK V+L + +GE   ++G NGSGKSTL K+L G    + T G V+  G +    +   
Sbjct: 18  AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--LKPTSGEVLVDGLDTSSEKSLL 75

Query: 153 --RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
             R   G  + FQ+P +           +A+      L + EI      A     LE + 
Sbjct: 76  ELRQKVG--LVFQNP-DDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA-----LELVG 127

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLA---VLGADLAILDEIDSGLDVDALRDVAKAVN 267
           +  + L+R      SGG+++R   + +A    +G ++ +LDE  +GLD    R++ + + 
Sbjct: 128 L-EELLDRPPFN-LSGGQKQR---VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182

Query: 268 GL-LTPKNSLLMITHYRRLLEFIKP--TFIHIMEDGRIIKTGD 307
            L      +++++TH    LE +      + +++DG+I+  GD
Sbjct: 183 KLKEEGGKTIIIVTHD---LELVLEYADRVVVLDDGKILADGD 222

Length = 235

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 80.7 bits (200), Expect = 8e-17
 Identities = 64/247 (25%), Positives = 115/247 (46%), Gaps = 37/247 (14%)

Query: 74  SQPLLQVTGLT----AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP 129
            +P L++ G+T     V+A         V+L V +GE+HA++G+NG+GKSTL K+L G  
Sbjct: 1   MEPALEMRGITKRFPGVVA------NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL- 53

Query: 130 DYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG 189
            Y+   G +   G+ +    P +    G+ M  Q  + +P +   + + +          
Sbjct: 54  -YQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGL-------- 104

Query: 190 QPEIGPIEFYAYLYPKLERLSMKTDF---LNRNVNEGFSGGERKRNEILQLAVLGADLAI 246
           +P  G +        +++ LS +       +  V    S GE++R EIL+    GA L I
Sbjct: 105 EPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-ADLSVGEQQRVEILKALYRGARLLI 163

Query: 247 LDEIDSGL---DVDALRDVAK--AVNGLLTPKNSLLMITHYRRLLEFIKPT-FIHIMEDG 300
           LDE  + L   + D L ++ +  A  G      +++ ITH  +L E +     + ++  G
Sbjct: 164 LDEPTAVLTPQEADELFEILRRLAAEGK-----TIIFITH--KLKEVMAIADRVTVLRRG 216

Query: 301 RIIKTGD 307
           +++ T D
Sbjct: 217 KVVGTVD 223

Length = 501

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 42/249 (16%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
              +++V  ++     S+   LK V+  +NEGE  AI+G NGSGKST+SK+L G    + 
Sbjct: 4   KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--LKP 61

Query: 134 TEGSVVFKG-----ENLLEMEPEERSLAGLFMSFQSP--------VEIPGVNNIDFLHMA 180
             G +   G     ENL E+    R   G+   FQ+P        VE    ++I     A
Sbjct: 62  QSGEIKIDGITISKENLKEI----RKKIGII--FQNPDNQFIGATVE----DDI-----A 106

Query: 181 YNARRRKLGQPEIGP-IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239
           +    +K+   ++   I+  A      +++ M+ D+L++   +  SGG+++R  I  +  
Sbjct: 107 FGLENKKVPPKKMKDIIDDLA------KKVGME-DYLDKE-PQNLSGGQKQRVAIASVLA 158

Query: 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIME 298
           L  ++ I DE  S LD    R++ K +  L  T K +L+ ITH   + E I    + +  
Sbjct: 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH--DMDEAILADKVIVFS 216

Query: 299 DGRIIKTGD 307
           +G++I  G 
Sbjct: 217 EGKLIAQGK 225

Length = 271

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 28/249 (11%)

Query: 77  LLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG---HPDY 131
           LL+V  L+         +  + GV+  + +GE+  I+G++GSGKS L+K ++G    P+ 
Sbjct: 1   LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60

Query: 132 EVTEGSVVFKGENLLEMEPEE-RSLAG--LFMSFQS------PVEIPGVNNIDFLHMAYN 182
            +  G ++F G++LL +  +E R + G  + M FQ       PV   G    + L +   
Sbjct: 61  RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120

Query: 183 ARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDF--LNRNVNEGFSGGERKRNEILQLAVL 240
              +K         E        LE + +      L    +E  SGG R+R  I     L
Sbjct: 121 GLSKK---------EAKERAIELLELVGIPDPERRLKSYPHE-LSGGMRQRVMIAMALAL 170

Query: 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMED 299
              L I DE  + LDV     +   +  L   K  +L++ITH   ++  I    + +M  
Sbjct: 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIA-DRVAVMYA 229

Query: 300 GRIIKTGDA 308
           GRI++ G  
Sbjct: 230 GRIVEEGPV 238

Length = 316

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 44/250 (17%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYEV 133
            +L+V  L+       + IL  ++  + +GE+  I+G NGSGKSTL K L G   P    
Sbjct: 1   MMLEVENLS--FGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK--- 55

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFMSF--QSPVEIPGVNNIDFL------HMAYNARR 185
             G V+  G+++  + P+E +     +++  QSP    G+   + +      H+    R 
Sbjct: 56  -SGEVLLDGKDIASLSPKELAKK---LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRP 111

Query: 186 RKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLA 245
            K  +  +            LE L +     +R V+E  SGGER+R  I +       + 
Sbjct: 112 SKEDEEIVEEA---------LELLGL-EHLADRPVDEL-SGGERQRVLIARALAQETPIL 160

Query: 246 ILDEIDSGLDV-------DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME 298
           +LDE  S LD+       + LRD+ +          +++M+ H   L        + +++
Sbjct: 161 LLDEPTSHLDIAHQIEVLELLRDLNR------EKGLTVVMVLHDLNLA-ARYADHLILLK 213

Query: 299 DGRIIKTGDA 308
           DG+I+  G  
Sbjct: 214 DGKIVAQGTP 223

Length = 258

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 47/227 (20%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
             EIL  ++L +  GE+ A+ GKNG+GK+TL+K+L G    + + GS++  G+ +     
Sbjct: 12  GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--IKESSGSILLNGKPI--KAK 67

Query: 151 EERSLAGLFMS------FQSPVE---IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY 201
           E R   G  M       F   V    + G+  +D    A N +   +             
Sbjct: 68  ERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETV------------- 110

Query: 202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV---LGADLAILDEIDSGLDVDA 258
               L+ L +      R+     SGG+++R   L +A     G DL I DE  SGLD   
Sbjct: 111 ----LKDLDL-YALKERHPLS-LSGGQKQR---LAIAAALLSGKDLLIFDEPTSGLDYKN 161

Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP--TFIHIMEDGRII 303
           +  V + +  L     ++++ITH     EF+      + ++ +G I+
Sbjct: 162 MERVGELIRELAAQGKAVIVITHD---YEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 74.1 bits (183), Expect = 1e-15
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 33/213 (15%)

Query: 79  QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEG 136
           +V  LT  ++     +L+ V+  V  GE  AI+G NG+GKSTL K ++G   P    T G
Sbjct: 1   EVEDLT--VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP----TSG 54

Query: 137 SVVFKGENLLEMEPEERSLAG-----LFMSFQSPVEIPGVNNIDFLHMAYNARR---RKL 188
           S+   G+ L     +ER   G       +    P+ +      D + M     +   R+L
Sbjct: 55  SIRVFGKPL----EKERKRIGYVPQRRSIDRDFPISV-----RDVVLMGLYGHKGLFRRL 105

Query: 189 GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILD 248
            + +   ++  A     LER+ + ++  +R + E  SGG+++R  + +  V   DL +LD
Sbjct: 106 SKADKAKVD-EA-----LERVGL-SELADRQIGE-LSGGQQQRVLLARALVQDPDLLLLD 157

Query: 249 EIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
           E  +G+D     D+ + +  L     ++L++TH
Sbjct: 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 41/288 (14%)

Query: 46  HLSLNRVTAALSAVDSPLKSSSDGQDEKSQPL---LQVTGLTAVIAESKQEILKGVNLLV 102
            ++L R+      +D+P +   D        L   ++   ++         +L+ ++L +
Sbjct: 440 KVALERLG---DILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEI 496

Query: 103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-RSLAGL--- 158
             GE  AI+G++GSGKSTL K+L+G   Y+  +G ++  G +L +++    R   G    
Sbjct: 497 PPGEKVAIVGRSGSGKSTLLKLLLGL--YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554

Query: 159 --FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERLSM 211
             F+   S  E     NI             LG PE    E       A  +  +E L M
Sbjct: 555 DPFLFSGSIRE-----NIA------------LGNPEATDEEIIEAAQLAGAHEFIENLPM 597

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
             D          SGG+R+R  + +  +    + +LDE  S LD +    + + +  +L 
Sbjct: 598 GYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ 657

Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
              ++++I H  RL        I +++ G+I++ G  S   +L +GG 
Sbjct: 658 -GRTVIIIAH--RLSTIRSADRIIVLDQGKIVEQG--SHEELLAQGGL 700

Length = 709

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 37/231 (16%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
             +   L  V+L +  GE  AI+G+ GSGKSTL K+L G   Y+ T GSV+  G ++ ++
Sbjct: 14  NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--YKPTSGSVLLDGTDIRQL 71

Query: 149 EPEE-RSLAGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
           +P + R   G     Q      G   +NI             LG P              
Sbjct: 72  DPADLRRNIGYVP--QDVTLFYGTLRDNI------------TLGAPLADDERILRAA--- 114

Query: 206 LERLSMKTDFLNRNVN----------EGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
              L+  TDF+N++ N           G SGG+R+   + +  +    + +LDE  S +D
Sbjct: 115 --ELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172

Query: 256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           +++   + + +  LL  K +L++ITH   LL+ +    I +M+ GRI+  G
Sbjct: 173 MNSEERLKERLRQLLGDK-TLIIITHRPSLLDLV--DRIIVMDSGRIVADG 220

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 51/250 (20%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG-HPDYEVTEG 136
           L+V+ L     +S   IL+GV+L V +GEV  ++G+NG GK+TL K L+G  P   V  G
Sbjct: 1   LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSG 55

Query: 137 SVVFKGENLLEMEPEERSLAGLF------MSF-QSPVEIPGVNNIDFLHMAYNARRRKLG 189
           S+   GE++ ++ P ER+ AG+         F +  VE     N+    +A   RR +  
Sbjct: 56  SIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE----ENLL-TGLAALPRRSR-- 108

Query: 190 QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG--FSGGERKRNEILQLA-----VLGA 242
             +I P E Y  L+P L+      + L R    G   SGG+++     QLA     V   
Sbjct: 109 --KI-PDEIYE-LFPVLK------EMLGR---RGGDLSGGQQQ-----QLAIARALVTRP 150

Query: 243 DLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIK--PTFIHIMED 299
            L +LDE   G+    ++D+ + +  L      ++L++  Y   L+F +      ++ME 
Sbjct: 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY---LDFARELADRYYVMER 207

Query: 300 GRIIKTGDAS 309
           GR++ +G   
Sbjct: 208 GRVVASGAGD 217

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 35/230 (15%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
             K+ +LK ++  +  GE  AI+G +GSGKSTL K+L+    Y+ T G ++  G ++ ++
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL--YDPTSGEILIDGIDIRDI 396

Query: 149 EPEE--RSLAGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFY----- 199
             +   + +    +  Q P+   G    NI              G+P+    E       
Sbjct: 397 SLDSLRKRIG---IVSQDPLLFSGTIRENIAL------------GRPDATDEEIEEALKL 441

Query: 200 AYLYPKLERLSMKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
           A  +  +  L    D  +  V E     SGG+R+R  I +  +    + ILDE  S LD 
Sbjct: 442 ANAHEFIANLP---DGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498

Query: 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           +    +  A+  LL  + + L+I H  RL        I ++++GRI++ G
Sbjct: 499 ETEALIQDALKKLLKGR-TTLIIAH--RLSTIKNADRIIVLDNGRIVERG 545

Length = 567

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 72.0 bits (178), Expect = 3e-15
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 58/228 (25%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           ++V  L+      K+  L  ++L V +GE++ ++G NG+GK+TL K+++G    +   G 
Sbjct: 1   IEVRNLSKRYG--KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG--LLKPDSGE 56

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG-QPEIGPI 196
           +   G+++                 + P E+                +R++G  PE    
Sbjct: 57  IKVLGKDI----------------KKEPEEV----------------KRRIGYLPE---- 80

Query: 197 EFYAYLYPKLERLSMKT--DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254
                LY  L      T  + L        SGG ++R  + Q  +   +L ILDE  SGL
Sbjct: 81  --EPSLYENL------TVRENLK------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126

Query: 255 DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302
           D ++ R+  + +  L     ++L+ +H     E +    + I+ +GRI
Sbjct: 127 DPESRREFWELLRELKKEGKTILLSSHILEEAERLC-DRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 31/221 (14%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
            +L+   ++    +  + +LK ++  ++ G+  AI+G NG+GKSTL K+L G  +     
Sbjct: 320 LVLEFENVSKGY-DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLS 376

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
           G+V   GE + ++   ++    L      P +      ++ L           G P+   
Sbjct: 377 GTVKV-GETV-KIGYFDQHRDELD-----PDKTV----LEELS---------EGFPDGDE 416

Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
            E  AYL     R     +   + V    SGGE+ R  + +L +   +L +LDE  + LD
Sbjct: 417 QEVRAYL----GRFGFTGEDQEKPVGV-LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471

Query: 256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI 296
           +++L  + +A   LL  + ++L+++H R  L+ +      +
Sbjct: 472 IESLEALEEA---LLDFEGTVLLVSHDRYFLDRVATRIWLV 509

Length = 530

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 51/229 (22%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L +  ++    E +Q++LK ++L + +GE  A++G++GSGKSTL ++L G  D +  +G 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG--DLKPQQGE 58

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
           +   G  + ++E    SL  +    Q P                                
Sbjct: 59  ITLDGVPVSDLEKALSSLISVLN--QRP-------------------------------- 84

Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257
              YL+            L  N+   FSGGER+R  + ++ +  A + +LDE   GLD  
Sbjct: 85  ---YLF---------DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPI 132

Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             R +   +  +L  K +L+ ITH+   +E +    I  +E+G+II  G
Sbjct: 133 TERQLLSLIFEVLKDK-TLIWITHHLTGIEHMDK--ILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 57/240 (23%), Positives = 97/240 (40%), Gaps = 62/240 (25%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEM 148
               L  ++L V  GE  A++G +G GK+TL +++ G   PD     G ++  G ++  +
Sbjct: 12  SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD----SGEILIDGRDVTGV 67

Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHM------AYNARRRKLGQPEIGPIEFYAYL 202
            PE R++    M FQ     P        H+      A+  + R + + EI      A +
Sbjct: 68  PPERRNIG---MVFQDYALFP--------HLTVAENIAFGLKLRGVPKAEIR-----ARV 111

Query: 203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
              LE + +    LNR  +E  SGG+++R  + +       L +LDE  S LD   LR+ 
Sbjct: 112 RELLELVGL-EGLLNRYPHE-LSGGQQQRVALARALAREPSLLLLDEPLSALDAK-LREE 168

Query: 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH----------------IMEDGRIIKTG 306
                          +    + L   +  T I+                +M +GRI++ G
Sbjct: 169 ---------------LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 71.3 bits (176), Expect = 6e-15
 Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 76/231 (32%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
            + +L  ++L +  GE+  I+G NG+GKSTL K L G    + + G ++  G++L  + P
Sbjct: 11  GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--LKPSSGEILLDGKDLASLSP 68

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           +E                              AR+              AY+   LE L 
Sbjct: 69  KEL-----------------------------ARKI-------------AYVPQALELLG 86

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV-------DALRDVA 263
           +     +R  NE  SGGER+R  + +       + +LDE  S LD+       + LR +A
Sbjct: 87  L-AHLADRPFNE-LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144

Query: 264 KAVNGLLTPKNSLLMITH-----YR---RLLEFIKPTFIHIMEDGRIIKTG 306
           +          +++M+ H      R   R++         +++DGRI+  G
Sbjct: 145 RERG------KTVVMVLHDLNLAARYADRVI---------LLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 72.2 bits (178), Expect = 8e-15
 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 38/229 (16%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLL 146
             K E LK VNL +  GE  AI+G +GSGKSTL  +L G   P    T G V+  G++L 
Sbjct: 15  GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP----TSGEVLINGKDLT 70

Query: 147 EMEPEERSLA-----GLFMSFQSPVEIPGVN---NIDFLHMAYNARRRKLGQPEIGPIEF 198
           ++  +E +       G F+ FQ+   +P +    N++ L +    +            + 
Sbjct: 71  KLSEKELAKLRRKKIG-FV-FQNFNLLPDLTVLENVE-LPLLIAGKSAGR-------RKR 120

Query: 199 YAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
            A     LE L ++   L +  +E  SGG+++R  I +  +    + + DE    LD   
Sbjct: 121 AAEEL--LEVLGLEDRLLKKKPSE-LSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177

Query: 259 LRDVAKAVNGLLT-----PKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302
               AK V  LL         +++M+TH   L ++        ++DG+I
Sbjct: 178 ----AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI--ELKDGKI 220

Length = 226

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 66/280 (23%), Positives = 121/280 (43%), Gaps = 33/280 (11%)

Query: 53  TAALSAVDSPLKSSSDGQDEKSQPL--------LQVTGLTAVIAESKQEILKGVNLLVNE 104
            AA   + + L+S         +          + +  L+       +  L  +NL +  
Sbjct: 288 EAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLS-FRYPDGKPALSDLNLTIKA 346

Query: 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS 164
           G++ A++G +G+GKSTL  +L+G      T+G +   G +L ++ PE       ++S Q+
Sbjct: 347 GQLTALVGASGAGKSTLLNLLLGF--LAPTQGEIRVNGIDLRDLSPEAWRKQISWVS-QN 403

Query: 165 PVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE 222
           P    G    NI       +         EI      A L   +     K D L+  + E
Sbjct: 404 PYLFAGTIRENILLARPDASDE-------EIIAALDQAGLLEFVP----KPDGLDTVIGE 452

Query: 223 ---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI 279
              G SGG+ +R  + +  +  A L +LDE  + LD +  + + +A+  L   K ++L+I
Sbjct: 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQK-TVLVI 511

Query: 280 THYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
           TH  RL +      I ++++GR+++ G      + E+ G 
Sbjct: 512 TH--RLEDAADADRIVVLDNGRLVEQGTHE--ELSEKQGL 547

Length = 559

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 47/236 (19%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
             +   L  V+L +  GE  AI+G+ GSGKSTL K+L+G   Y+ TEGSV+  G ++ ++
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL--YQPTEGSVLLDGVDIRQI 532

Query: 149 EPEE-RSLAGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
           +P + R   G     Q P    G   +NI             LG P     E        
Sbjct: 533 DPADLRRNIGYVP--QDPRLFYGTLRDNIA------------LGAPYADDEEILRAA--- 575

Query: 206 LERLSMKTDFLNRN-------VNEG---FSGGERK-----RNEILQLAVLGADLAILDEI 250
              L+  T+F+ R+       + E     SGG+R+     R  +    +L     +LDE 
Sbjct: 576 --ELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL-----LLDEP 628

Query: 251 DSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            S +D  +       +   L  K +L+++TH   LL+ +    I +M++GRI+  G
Sbjct: 629 TSAMDNRSEERFKDRLKRWLAGK-TLVLVTHRTSLLDLV--DRIIVMDNGRIVADG 681

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 42/252 (16%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           ++V  L+      K+  LK V+L +N GE  A++G +G+GKSTL + L G    E T GS
Sbjct: 1   IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--VEPTSGS 57

Query: 138 VVFKGENLLEMEPEE----RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
           V+  G ++ +++ +     R   G  M FQ        N I+ L +  N    +LG+   
Sbjct: 58  VLIDGTDINKLKGKALRQLRRQIG--MIFQQF------NLIERLSVLENVLSGRLGR--R 107

Query: 194 GPIEFYAYLYPK---------LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
                   L+PK         LER+ +  D   +  ++  SGG+++R  I +  +    L
Sbjct: 108 STWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQ-LSGGQQQRVAIARALMQQPKL 165

Query: 245 AILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT-----HYRRLLEFIKPTFIHI--M 297
            + DE  + LD  +    ++ V  LL   N    IT     H    ++  +     I  +
Sbjct: 166 ILADEPVASLDPAS----SRQVMDLLKRINREEGITVIVSLH---QVDLAREYADRIVGL 218

Query: 298 EDGRIIKTGDAS 309
           +DGRI+  G  +
Sbjct: 219 KDGRIVFDGPPA 230

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 69.8 bits (172), Expect = 4e-14
 Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 25/220 (11%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEM 148
           K + LKGV+L + +GE  AI+G +GSGKSTL  +L G   P    T G V   G ++ ++
Sbjct: 16  KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP----TSGEVRVDGTDISKL 71

Query: 149 EPEERSL-----AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLY 203
             +E +       G    FQS   +P +  ++ + +          +      E    L 
Sbjct: 72  SEKELAAFRRRHIGFV--FQSFNLLPDLTALENVELPLLLAGVPKKERR----ERAEEL- 124

Query: 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263
             LER+ +  D LN   +E  SGG+++R  I +       + + DE    LD +  ++V 
Sbjct: 125 --LERVGLG-DRLNHYPSE-LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180

Query: 264 KAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRI 302
           + +  L      +++++TH   L E+        + DG+I
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYADRII--ELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 67.8 bits (167), Expect = 8e-14
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 12/93 (12%)

Query: 78  LQVTGLT----AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           L++ G+T     V A      L GV+L V  GEVHA++G+NG+GKSTL K+L G   Y+ 
Sbjct: 1   LELRGITKRFGGVKA------LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG--LYKP 52

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPV 166
             G ++  G+ +    P +   AG+ M +Q  V
Sbjct: 53  DSGEILVDGKEVSFASPRDARRAGIAMVYQLSV 85

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 29/224 (12%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
           + +LK V+  +  G+  AI+G +GSGKST+ ++L     Y+V+ GS++  G+++ E+  +
Sbjct: 14  RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF--YDVSSGSILIDGQDIREVTLD 71

Query: 152 E-RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPK 205
             R   G+      P +    N+     + YN R    G+P+    E       A ++ K
Sbjct: 72  SLRRAIGVV-----PQDTVLFNDT----IGYNIR---YGRPDATDEEVIEAAKAAQIHDK 119

Query: 206 LERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
           + R     D +   V E     SGGE++R  I +  +    + +LDE  S LD    R++
Sbjct: 120 IMRFPDGYDTI---VGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176

Query: 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             A+  +   + + ++I H  RL   +    I +++DGRI++ G
Sbjct: 177 QAALRDVSKGRTT-IVIAH--RLSTIVNADKIIVLKDGRIVERG 217

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 63/274 (22%), Positives = 109/274 (39%), Gaps = 45/274 (16%)

Query: 53  TAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMG 112
           ++    +  P +       E ++PL+++  ++  +  + ++IL  ++  VN GE  AI+G
Sbjct: 7   SSRGVELPEPKEPKKRHPIEINEPLIELKNVS--VRRNGKKILGDLSWQVNPGEHWAIVG 64

Query: 113 KNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL--EMEPEERSLAGLFMSFQSPVEIPG 170
            NG+GK+TL  +L G  ++  + G V   G      E   E R   GL  S         
Sbjct: 65  PNGAGKTTLLSLLTG--EHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSS--------- 113

Query: 171 VNNIDFLHMAYNARRRKLGQPEI------GPIEFYAYLYPKLERLSMK--------TDFL 216
                 LH  +   R +    ++        I  Y       +  + +            
Sbjct: 114 -----ELHERF---RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165

Query: 217 NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNS- 275
           +R      S GE++R  I +  V   +L ILDE   GLD+ A   +   +  L     + 
Sbjct: 166 DRPF-GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAP 224

Query: 276 -LLMITHYRRLLEFIKPTFIHIME--DGRIIKTG 306
            LL +TH+    E I P F H +   +G ++  G
Sbjct: 225 ALLFVTHH---AEEIPPCFTHRLLLKEGEVVAQG 255

Length = 257

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 45/266 (16%)

Query: 59  VDSPLKSSSDGQDEKSQPLLQVTG------LTAVIAESKQEILKGVNLLVNEGEVHAIMG 112
           +DSP       +D  ++ + +  G      +T       +  L  ++L++  GE  A++G
Sbjct: 311 LDSP-----PEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVG 365

Query: 113 KNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEMEPEERSLAGL----------FMS 161
           ++GSGKSTL  ++   P  YE   G ++  G +L      + +LA L           + 
Sbjct: 366 RSGSGKSTLVNLI---PRFYEPDSGQILLDGHDL-----ADYTLASLRRQVALVSQDVVL 417

Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
           F   +     NNI     AY  R  +  + EI      AY    +++L +  D      N
Sbjct: 418 FNDTI----ANNI-----AY-GRTEQADRAEIERALAAAYAQDFVDKLPLGLDT-PIGEN 466

Query: 222 EG-FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
               SGG+R+R  I +  +  A + ILDE  S LD ++ R V  A+  L+    + L+I 
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIA 525

Query: 281 HYRRLLEFIKPTFIHIMEDGRIIKTG 306
           H  RL    K   I +M+DGRI++ G
Sbjct: 526 H--RLSTIEKADRIVVMDDGRIVERG 549

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 23/224 (10%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           + K+ +LK +N  +  GE  AI+G  G+GK+TL  +L+    Y+  +G ++  G ++ ++
Sbjct: 13  DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--YDPQKGQILIDGIDIRDI 70

Query: 149 EPEE-RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
             +  RS+ G  +  Q      G  + NI                 E G  +F       
Sbjct: 71  SRKSLRSMIG--VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDF------- 121

Query: 206 LERLSMKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
           + +L    +  +  + E     S GER+   I +  +    + ILDE  S +D +  + +
Sbjct: 122 IMKL---PNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178

Query: 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            +A+  L+  + S ++I H  RL        I +++DG+II+ G
Sbjct: 179 QEALEKLMKGRTS-IIIAH--RLSTIKNADKILVLDDGKIIEEG 219

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 39/229 (17%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
           Q  L G+NL V  GE  A++G +G+GKSTL ++L+    Y+   G ++  G +L +++P 
Sbjct: 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF--YDPQSGRILLDGVDLRQLDPA 410

Query: 152 E-RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
           E R+   L    Q PV      + NI +            G+P+    E  A       R
Sbjct: 411 ELRARMALVP--QDPVLFAASVMENIRY------------GRPDATDEEVEA-----AAR 451

Query: 209 LSMKTDFLNRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257
            +   +F++  + EG+           SGG+R+R  I +  +  A + +LDE  S LD +
Sbjct: 452 AAHAHEFISA-LPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510

Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           + + V +A+  L+  + +L+ I H  RL   +K   I +M+ GRI+  G
Sbjct: 511 SEQLVQQALETLMKGRTTLI-IAH--RLATVLKADRIVVMDQGRIVAQG 556

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 49/227 (21%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDY 131
             P+++V  LT       + +L+ ++L V +GE+ A++G NG+GKSTL K ++G   P  
Sbjct: 1   MMPMIEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-- 56

Query: 132 EVTEGSVVFKGENLLEMEPEER-----SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186
             + G +   G+ + +     R       + +  SF   V+       D + +    ++ 
Sbjct: 57  --SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVK-------DVVLLGRYGKKG 107

Query: 187 KLGQPEIGPIE--FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
              +      E    A     LER+ M+ D  +R + E  SGG+++R  + +      DL
Sbjct: 108 WFRRLNKKDKEKVDEA-----LERVGME-DLRDRQIGE-LSGGQKQRVLLARALAQNPDL 160

Query: 245 AILDEIDSGLDV----------DALRDVAKAVNGLLTPKNSLLMITH 281
            +LDE  +G+DV            LR   K V          LM+TH
Sbjct: 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTV----------LMVTH 197

Length = 254

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 35/246 (14%)

Query: 73  KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE 132
             +P L++  ++   +      +  ++L + +GE   ++G +G GK+TL +++ G    +
Sbjct: 1   MPKPALEIRNVS--KSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--EQ 56

Query: 133 VTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN---NIDF-LHMAYNARRRKL 188
            + G ++  GE++ ++ PE+R +    M FQS    P +    N+ F L +     R+KL
Sbjct: 57  PSSGEILLDGEDITDVPPEKRPIG---MVFQSYALFPHMTVEENVAFGLKV-----RKKL 108

Query: 189 GQPEIGP-IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA---VLGADL 244
            + EI   +E        LE + ++  F +R  ++  SGG+++R   + LA   V    +
Sbjct: 109 KKAEIKARVEEA------LELVGLE-GFADRKPHQ-LSGGQQQR---VALARALVPEPKV 157

Query: 245 AILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPT-FIHIMEDGRI 302
            +LDE  S LD      + K +  L      + + +TH +   E +  +  I +M DGRI
Sbjct: 158 LLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE--EALAMSDRIAVMNDGRI 215

Query: 303 IKTGDA 308
            + G  
Sbjct: 216 EQVGTP 221

Length = 352

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 21/195 (10%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEP 150
           E+LKG+N     GEV A++G NG+GKSTL   L G   P      G+V+  GE    ++ 
Sbjct: 6   EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP----QSGAVLIDGE---PLDY 58

Query: 151 EERSLAGL----FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
             + L        + FQ P +     ++D   +A+      LG  E    E    +   L
Sbjct: 59  SRKGLLERRQRVGLVFQDPDDQLFAADVD-QDVAFGP--LNLGLSE---AEVERRVREAL 112

Query: 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266
             +   +    R  +   SGGE+KR  I     +  D+ +LDE  +GLD      +   +
Sbjct: 113 TAVGA-SGLRERPTHC-LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170

Query: 267 NGLLTPKNSLLMITH 281
             L     ++++ TH
Sbjct: 171 RRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 67.2 bits (164), Expect = 4e-13
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 23/210 (10%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEV 133
            LL++  +         +IL  ++L V  GE  AI G +G GKSTL K++     P    
Sbjct: 2   MLLELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--- 56

Query: 134 TEGSVVFKGENLLEMEPEE-RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
             G+++F+GE++  ++PE  R         Q+P         D L   +  R R+     
Sbjct: 57  -SGTLLFEGEDVSTLKPEAYRQQVSYCA--QTPALFGDTVE-DNLIFPWQIRNRRP-DRA 111

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
              ++        L R ++    L +N+ E  SGGE++R  +++       + +LDEI S
Sbjct: 112 AA-LDL-------LARFALPDSILTKNITE-LSGGEKQRIALIRNLQFMPKILLLDEITS 162

Query: 253 GLDVDALRDVAKAVNGLLTPKN-SLLMITH 281
            LD    R++ + ++  +  +N ++L ITH
Sbjct: 163 ALDESNKRNIEEMIHRYVREQNVAVLWITH 192

Length = 223

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 36/224 (16%)

Query: 72  EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HP 129
              +PL++V G+T    +    IL GV+L V  GE+ AI+G +GSGKSTL ++++G   P
Sbjct: 3   ASPEPLIEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60

Query: 130 DYEVTEGSVVFKGENLLEMEPEERSLAGLFMS--FQSPVEIPGVN---NIDFLHMAYNAR 184
           D    +G ++  GE++ ++  EE       M   FQ       +    N+ F    +   
Sbjct: 61  D----KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKL 116

Query: 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
              L       I     +  KLE + ++    +   +E  SGG RKR  + +   L  +L
Sbjct: 117 PESL-------IRELVLM--KLELVGLRGAAADLYPSE-LSGGMRKRVALARAIALDPEL 166

Query: 245 AILDEIDSGLD-------VDALRDVAKAVNGLLTPKNSLLMITH 281
             LDE  SGLD        + +R++  A+   LT    ++M+TH
Sbjct: 167 LFLDEPTSGLDPISAGVIDELIRELNDALG--LT----VIMVTH 204

Length = 263

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 67.5 bits (165), Expect = 6e-13
 Identities = 58/236 (24%), Positives = 116/236 (49%), Gaps = 37/236 (15%)

Query: 88  AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENL 145
           A+ +  +L  V+L + EGE   ++G++G GKSTL+++L+G   P     +G+V F+G++L
Sbjct: 20  AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP----AQGTVSFRGQDL 75

Query: 146 LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR---RRKLGQP-----EIGPIE 197
            +++ ++R       +F+  V++   ++      A N R   R+ +G+P      +   E
Sbjct: 76  YQLDRKQRR------AFRRDVQLVFQDSPS----AVNPRMTVRQIIGEPLRHLTSLDESE 125

Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD-- 255
             A +   L+ + ++++  ++   +  SGG+ +R  I +   +   L +LDE  S LD  
Sbjct: 126 QKARIAELLDMVGLRSEDADKLPRQ-LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184

Query: 256 ----VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
               +  L    +   G      + L ITH  RL++        +M+ G+I++  D
Sbjct: 185 LQAVILELLRKLQQAFGT-----AYLFITHDLRLVQSFCQRVA-VMDKGQIVEECD 234

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 68.6 bits (168), Expect = 6e-13
 Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 75/256 (29%)

Query: 89  ESKQEILK---------GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV 139
           +SK EILK           +L V EGE+  IMG +GSGKSTL ++L      E T G ++
Sbjct: 29  KSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--IEPTRGEIL 86

Query: 140 FKGENLLEMEPEE------RSLAGLFMSFQS---------------PVEIPGVNNIDFLH 178
             G+++ ++   E      + ++   M FQS                +E+ GV   +   
Sbjct: 87  VDGKDIAKLSAAELRELRRKKIS---MVFQSFALLPHRTVLENVAFGLEVQGVPKAE--- 140

Query: 179 MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
                  R L   E+  +E YA  YP                NE  SGG ++R  + +  
Sbjct: 141 ----REERALEALELVGLEGYADKYP----------------NE-LSGGMQQRVGLARAL 179

Query: 239 VLGADLAILDEIDSGLD-------VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK- 290
               D+ ++DE  S LD        D L ++   +      K +++ ITH   L E ++ 
Sbjct: 180 ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL------KKTIVFITH--DLDEALRI 231

Query: 291 PTFIHIMEDGRIIKTG 306
              I IM+DG I++ G
Sbjct: 232 GDRIAIMKDGEIVQVG 247

Length = 386

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 66.4 bits (163), Expect = 7e-13
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 29/236 (12%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           LQ+  LT    +  +  +  ++L V +GE+  ++G NG+GK+T  K+L G  +   T G+
Sbjct: 1   LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG--ELRPTSGT 58

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR---RRKLGQPEIG 194
               G ++       R   G     Q       +   +  H+ + AR     K    E  
Sbjct: 59  AYINGYSIRTDRKAARQSLG--YCPQFDALFDELTVRE--HLRFYARLKGLPKSEIKEEV 114

Query: 195 PIEFYAY-LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL---GADLAILDEI 250
            +      L  K  + +              SGG +++   L LA+    G  + +LDE 
Sbjct: 115 ELLLRVLGLTDKANKRART-----------LSGGMKRK---LSLAIALIGGPSVLLLDEP 160

Query: 251 DSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            SGLD  + R +   +   +    S+++ TH     E +    I IM DG++   G
Sbjct: 161 TSGLDPASRRAIWDLILE-VRKGRSIILTTHSMDEAEALC-DRIAIMSDGKLRCIG 214

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 68.7 bits (169), Expect = 7e-13
 Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 40/271 (14%)

Query: 49  LNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH 108
           +N +T     V  P    +       Q  L +  ++    +  Q +LKG++L +  GE  
Sbjct: 314 INEITEQKPEVTFP----TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKV 369

Query: 109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM-EPEERSLAGLFMSFQSP-V 166
           A++G+ G GKSTL ++L     ++  +G ++  G+ + +  E   R      +S  S  V
Sbjct: 370 ALLGRTGCGKSTLLQLLTRA--WDPQQGEILLNGQPIADYSEAALRQA----ISVVSQRV 423

Query: 167 EIPGVNNIDFLHMAYNARRR---KLGQPEIGPIEFYAYLYP-KLERLSMKTDFLNRNVNE 222
            +            ++A  R    L  P          L    LE+L      LN  + E
Sbjct: 424 HL------------FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGE 471

Query: 223 G---FSGGERKRNEILQLA-VL--GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL 276
           G    SGGE++R   L +A  L   A L +LDE   GLD +  R + + +      K ++
Sbjct: 472 GGRQLSGGEQRR---LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK-TV 527

Query: 277 LMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           LMITH  RL    +   I +M++G+II+ G 
Sbjct: 528 LMITH--RLTGLEQFDRICVMDNGQIIEQGT 556

Length = 574

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 27/255 (10%)

Query: 44  RHHLSLNRVTAA------LSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKG 97
           ++H   + V AA      L A   PL   +        P L+ +G++ V    ++  L+ 
Sbjct: 283 QYHARADGVAAAEALFAVLDAAPRPLAGKAP-VTAAPAPSLEFSGVS-VAYPGRRPALRP 340

Query: 98  VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157
           V+  V  GE  A++G +G+GKSTL  +L+G    + TEGS+   G  L + + +      
Sbjct: 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGF--VDPTEGSIAVNGVPLADADADSWRDQI 398

Query: 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF-----YAYLYPKLERLSMK 212
            ++  Q P    G        +A N R   L +P+    E       A L   +  L   
Sbjct: 399 AWVP-QHPFLFAGT-------IAENIR---LARPDASDAEIREALERAGLDEFVAALPQG 447

Query: 213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272
            D        G SGG+ +R  + +  +  A L +LDE  + LD +   +V +A+  L   
Sbjct: 448 LDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQG 507

Query: 273 KNSLLMITHYRRLLE 287
           + ++L++TH   L  
Sbjct: 508 R-TVLLVTHRLALAA 521

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 66.3 bits (162), Expect = 9e-13
 Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 19/210 (9%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           + PLLQ+  +  +  ++K  IL  ++  +  GE   I G +G GKSTL K++        
Sbjct: 4   NSPLLQLQNVGYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL--ISP 59

Query: 134 TEGSVVFKGENLLEMEPEE-RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
           T G+++F+GE++  ++PE  R         Q+P  + G    D L   +  R +   QP+
Sbjct: 60  TSGTLLFEGEDISTLKPEIYRQQVS--YCAQTPT-LFGDTVYDNLIFPWQIRNQ---QPD 113

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
             P  F       LER ++    L +N+ E  SGGE++R  +++       + +LDEI S
Sbjct: 114 --PAIFLD----DLERFALPDTILTKNIAE-LSGGEKQRISLIRNLQFMPKVLLLDEITS 166

Query: 253 GLDVDALRDVAKAVNGLLTPKN-SLLMITH 281
            LD     +V + ++  +  +N ++L +TH
Sbjct: 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTH 196

Length = 225

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 40/219 (18%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLE 147
            SK  ILK  + +V  GE+  ++G+ GSG STL K L    +     EG + + G    E
Sbjct: 17  RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76

Query: 148 M-EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
             E     +                 + + +H      R  L        +F        
Sbjct: 77  FAEKYPGEII--------------YVSEEDVHFPTLTVRETL--------DF-------- 106

Query: 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266
             L  K    N  V  G SGGERKR  I +  V  A +   D    GLD     ++ K +
Sbjct: 107 -ALRCKG---NEFV-RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI 161

Query: 267 NGLLTPKNSLLMITHYRRLLEFIKPTF--IHIMEDGRII 303
             +     +   ++ Y+   E I   F  + ++ +GR I
Sbjct: 162 RTMADVLKTTTFVSLYQASDE-IYDLFDKVLVLYEGRQI 199

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 56/221 (25%), Positives = 106/221 (47%), Gaps = 29/221 (13%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEM 148
           K+ +L  ++L V +GE++  +G NG+GK+T  K+++G   PD     G + F G++  + 
Sbjct: 12  KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD----SGEITFDGKSYQKN 67

Query: 149 EPEERSLAGLFMSFQSPVEIPGVNN--IDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
               R +  L       +E PG         ++   AR   + +  I  +         L
Sbjct: 68  IEALRRIGAL-------IEAPGFYPNLTARENLRLLARLLGIRKKRIDEV---------L 111

Query: 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA-DLAILDEIDSGLDVDALRDVAKA 265
           + + +K     +   +GFS G ++R  I  LA+LG  DL ILDE  +GLD D ++++ + 
Sbjct: 112 DVVGLKDS--AKKKVKGFSLGMKQRLGI-ALALLGNPDLLILDEPTNGLDPDGIKELREL 168

Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           +  L     ++L+ +H    ++ +      I+  G++I+ G
Sbjct: 169 ILSLRDQGITVLISSHLLSEIQKVADRIG-IINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 60/231 (25%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L++  ++    +    +L  V+L +  GE+ A++G +GSGKSTL + + G    E   GS
Sbjct: 1   LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL--EEPDSGS 56

Query: 138 VVFKGENLLEME----PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
           ++  GE+L ++E    P  R +    M FQ                              
Sbjct: 57  ILIDGEDLTDLEDELPPLRRRIG---MVFQDFA--------------------------- 86

Query: 194 GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSG 253
                   L+P L  L         N+  G SGG+++R  + +   +  D+ +LDE  S 
Sbjct: 87  --------LFPHLTVLE--------NIALGLSGGQQQRVALARALAMDPDVLLLDEPTSA 130

Query: 254 LDV---DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR 301
           LD      +R + K++   L    +++++TH       +    + ++ DG+
Sbjct: 131 LDPITRREVRALLKSLQAQL--GITVVLVTHDLDEAARLADR-VVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 24/199 (12%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKV---LVGHPDYEVTEGSVVFKGENLLEME 149
             LK ++L + +GE+ A++G +G GKSTL ++   L         EG V+  G+++ +++
Sbjct: 14  HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73

Query: 150 PEERSL-AGLFMSFQSPVEIPG--VNNIDFLHMAYNAR-RRKLGQPEIGPIEFYAYLYPK 205
            +   L   + M FQ P   PG   +N+     AY  R      + E+      A     
Sbjct: 74  VDVLELRRRVGMVFQKPNPFPGSIYDNV-----AYGLRLHGIKLKEELDERVEEA----- 123

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLA---VLGADLAILDEIDSGLDVDALRDV 262
           L + ++  +  +R    G SGG+++R   L LA       ++ +LDE  S LD  +   +
Sbjct: 124 LRKAALWDEVKDRLHALGLSGGQQQR---LCLARALANEPEVLLLDEPTSALDPISTAKI 180

Query: 263 AKAVNGLLTPKNSLLMITH 281
            + +  L   + +++++TH
Sbjct: 181 EELIAELKK-EYTIVIVTH 198

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 16/166 (9%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
               L  +NL + +GE   ++G +G GK+T  +++ G    E T G +   G ++ ++ P
Sbjct: 12  NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--EEPTSGRIYIGGRDVTDLPP 69

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP-IEFYAYLYPKLERL 209
           ++R +A   M FQ+    P +   D  ++A+  + RK+ + EI   +   A L  ++E L
Sbjct: 70  KDRDIA---MVFQNYALYPHMTVYD--NIAFGLKLRKVPKDEIDERVREVAELL-QIEHL 123

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
                 L+R   +  SGG+R+R  + +  V    + ++DE  S LD
Sbjct: 124 ------LDRKPKQ-LSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 63.2 bits (155), Expect = 4e-12
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
              + +LK V+L +  GE  AI+G +GSGKSTL K+L+    Y+ T G ++  G +L ++
Sbjct: 12  GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDPTSGEILIDGVDLRDL 69

Query: 149 EPEE 152
           + E 
Sbjct: 70  DLES 73

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 64.1 bits (157), Expect = 5e-12
 Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 35/241 (14%)

Query: 71  DEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD 130
              S  L ++  L       +   LK V+  V  GE   ++G+NG+GKSTL ++L G   
Sbjct: 14  KGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-- 71

Query: 131 YEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ 190
           Y    G+V  +G           SL GL   F    E+ G  NI          R+++ +
Sbjct: 72  YPPDSGTVTVRG--------RVSSLLGLGGGFNP--ELTGRENIYLNGRLLGLSRKEIDE 121

Query: 191 --PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV---LGADLA 245
              EI  IEF           S   DF++  V   +S G + R   L  A+   L  D+ 
Sbjct: 122 KIDEI--IEF-----------SELGDFIDLPVKT-YSSGMKAR---LAFAIATALEPDIL 164

Query: 246 ILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305
           ++DE+ +  D        + +  LL    ++++++H    ++ +    + ++E G+I   
Sbjct: 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRAL-VLEKGKIRFD 223

Query: 306 G 306
           G
Sbjct: 224 G 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 21/218 (9%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           E ++GV+  V  GE+  ++G NG+GK+T  K+L      + T G     G +++    E 
Sbjct: 14  EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--LKPTSGRATVAGHDVVREPREV 71

Query: 153 RSLAGLFMSFQSPV---EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
           R   G+   FQ      E+ G  N+      Y     +  +     ++F   L       
Sbjct: 72  RRRIGIV--FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL------- 122

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
               +  +R V   +SGG R+R EI +  V   ++  LDE   GLD      V + +  L
Sbjct: 123 ----EAADRLVKT-YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177

Query: 270 LTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
                 ++L+ THY    E +    + I++ GRII  G
Sbjct: 178 KEEFGMTILLTTHYMEEAEQLCDR-VAIIDHGRIIAEG 214

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 65.7 bits (161), Expect = 6e-12
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 19/223 (8%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
             ++ +  L+       + +L+ V+L +N GE   ++G+NG+GKSTL K+L G  + E  
Sbjct: 1   MSMITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG--ELEPD 56

Query: 135 EGSVVFKG---ENLL----EMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA-YNARRR 186
            G V          L     ++PE+  L  +   F    E+       +  +A  +    
Sbjct: 57  SGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELL 116

Query: 187 KLGQPEIGPIEFYAYLYPKLERLSMKTDF--LNRNVNEGFSGGERKRNEILQLAVLGADL 244
              +  +  ++ +     + E   +   F   +R V+   SGG R+R  + +  +   DL
Sbjct: 117 AELEALLEELDGWTLEA-RAEEALLGLGFPDEDRPVSS-LSGGWRRRVALARALLEEPDL 174

Query: 245 AILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLE 287
            +LDE  + LD+++   +    + L     ++++++H R  L+
Sbjct: 175 LLLDEPTNHLDLES---IEWLEDYLKRYPGTVIVVSHDRYFLD 214

Length = 530

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 43/209 (20%)

Query: 63  LKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLS 122
           LK   D +D K         L AV          GV L + EGE   ++G++G GKST +
Sbjct: 14  LKVHFDIKDGKQWFWQPPKTLKAV---------DGVTLRLYEGETLGVVGESGCGKSTFA 64

Query: 123 KVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA--GLFMSFQSPVEIPGVNNIDFLHMA 180
           + ++G    + T+G V + G++LL M+ +E       + M FQ P             +A
Sbjct: 65  RAIIGL--VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP-------------LA 109

Query: 181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-------------DFLNRNVNEGFSGG 227
               R  +G+    P+  Y   +PKL R  +K              + +NR  +E FSGG
Sbjct: 110 SLNPRMTIGEIIAEPLRTY---HPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE-FSGG 165

Query: 228 ERKRNEILQLAVLGADLAILDEIDSGLDV 256
           + +R  I +  +L   L I DE  S LDV
Sbjct: 166 QCQRIGIARALILEPKLIICDEPVSALDV 194

Length = 331

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 119 STLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLH 178
           STL K++ G    + T G+++  GE+   +   +     + + FQ P   P +   + L 
Sbjct: 1   STLLKLITGL--LQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58

Query: 179 MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
                +               A     LER+ +  DFL+R      SGG+++R  I +  
Sbjct: 59  FGLRDKEAD------------ARAEEALERVGL-PDFLDREPVGTLSGGQKQRVAIARAL 105

Query: 239 VLGADLAILDE 249
           +    L +LDE
Sbjct: 106 LKKPKLLLLDE 116

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 53/246 (21%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEME-PE 151
           +L+ ++L +  GE  A++G +GSGKSTL  ++   P  Y+V  G ++  G ++ +     
Sbjct: 17  VLRDISLDIPAGETVALVGPSGSGKSTLVNLI---PRFYDVDSGRILIDGHDVRDYTLAS 73

Query: 152 ERSLAGL-----FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP--IEFYAYLYP 204
            R   GL     F+ F   V      NI     AY       G+P      +E  A    
Sbjct: 74  LRRQIGLVSQDVFL-FNDTVA----ENI-----AY-------GRPGATREEVEEAA---- 112

Query: 205 KLERLSMKTDFLNRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSG 253
              R +   +F+   + EG+           SGG+R+R  I +  +    + ILDE  S 
Sbjct: 113 ---RAANAHEFI-MELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSA 168

Query: 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV 313
           LD ++ R V  A+  L+  + + + I H  RL        I ++EDG+I++ G  +   +
Sbjct: 169 LDTESERLVQAALERLMKNRTTFV-IAH--RLSTIENADRIVVLEDGKIVERG--THEEL 223

Query: 314 LEEGGY 319
           L +GG 
Sbjct: 224 LAQGGV 229

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 16/178 (8%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           LQ+  LT      K+  L GV+L +  G ++ ++G NG+GK+TL ++L        + G+
Sbjct: 1   LQLENLTKRYG--KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL--TPPSSGT 55

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
           +   G+++L+   + R   G ++  Q     P     +FL   Y A  +      I   E
Sbjct: 56  IRIDGQDVLKQPQKLRRRIG-YLP-QEFGVYPNFTVREFL--DYIAWLK-----GIPSKE 106

Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
             A +   LE +++  D   + +    SGG R+R  I Q  V    + I+DE  +GLD
Sbjct: 107 VKARVDEVLELVNL-GDRAKKKIG-SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 41/252 (16%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYE 132
           +PLLQV+GL+      K    + V+  +  GEV  I+G++GSGKSTL   L G   PD  
Sbjct: 1   KPLLQVSGLSKSYGGGKG--CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD-- 56

Query: 133 VTEGSVVF--KGENLLEM----EPEERSLAGLFMSF--QSPVEIPGVNNIDFLHMAYNA- 183
              G+  +  +    LE+    E E R L      F  Q+P         D L M  +A 
Sbjct: 57  --HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR--------DGLRMRVSAG 106

Query: 184 -----RRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
                R   +G    G I   A  +  LE + +    ++ ++   FSGG ++R +I +  
Sbjct: 107 ANIGERLMAIGARHYGNIRATAQDW--LEEVEIDPTRID-DLPRAFSGGMQQRLQIARNL 163

Query: 239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITH---YRRLLEFIKPTFI 294
           V    L  +DE   GLDV     +   + GL+     +++++TH     RLL       +
Sbjct: 164 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA----QRL 219

Query: 295 HIMEDGRIIKTG 306
            +M+ GR++++G
Sbjct: 220 LVMQQGRVVESG 231

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 17/221 (7%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           LK VNL V  GE+HA++G+NG+GKSTL KVL G   +E T+G++     N  +++ +  +
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--HEPTKGTITINNINYNKLDHKLAA 78

Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNAR---RRKLGQPEIGPIEFYAYLYPKLERLSM 211
             G+ + +Q   E+  ++ +  L   Y  R   ++  G   I   E        L R+ +
Sbjct: 79  QLGIGIIYQ---ELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL---DVDALRDVAKAVNG 268
           K D L+  V    S   ++  EI +  +L A + I+DE  S L   +VD L  +   +N 
Sbjct: 136 KVD-LDEKVAN-LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI---MNQ 190

Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
           L     +++ I+H    +  I   +  +M+DG  + +G  S
Sbjct: 191 LRKEGTAIVYISHKLAEIRRICDRYT-VMKDGSSVCSGMVS 230

Length = 510

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 53/221 (23%)

Query: 88  AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147
            E +  ILKGV L+V  GE  AI+G +GSGKSTL  VL G  D   + G V   G+ L +
Sbjct: 19  GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHK 76

Query: 148 MEPEER------SLAGLFMSFQ------------SPVEIPGVNNIDFLHMAYNARRRKLG 189
           ++ + R       +  +F SF              P+E+ G ++ D    +    +  L 
Sbjct: 77  LDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD----SRAGAKALLE 132

Query: 190 QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDE 249
              +G            +RL+     L        SGGE++R  + +      D+   DE
Sbjct: 133 AVGLG------------KRLTHYPAQL--------SGGEQQRVALARAFAGRPDVLFADE 172

Query: 250 IDSGLDVDALRDVAKAVNGLLTPKN-----SLLMITHYRRL 285
               LD    R     +  LL   N     +L+++TH  +L
Sbjct: 173 PTGNLD----RATGDKIADLLFALNRERGTTLVLVTHDPQL 209

Length = 228

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 45/207 (21%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPE 151
           +LKGV+L V  GE+ AI+G +GSGKSTL +++VG   PD     G V+  GE++  +   
Sbjct: 15  VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD----SGEVLIDGEDISGLSEA 70

Query: 152 ERSLAGLFMS--FQSP-------VEIPGVNNIDF-LHMAYNARRRKLGQPEIGPIEFYAY 201
           E       M   FQS        V      N+ F L         +L + EI  I     
Sbjct: 71  ELYRLRRRMGMLFQSGALFDSLTVF----ENVAFPLRE-----HTRLSEEEIREIVLE-- 119

Query: 202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD------ 255
              KLE + ++    +    E  SGG +KR  + +   L  +L + DE  +GLD      
Sbjct: 120 ---KLEAVGLR-GAEDLYPAE-LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174

Query: 256 -VDALRDVAKAVNGLLTPKNSLLMITH 281
             D +R + K +        + +M+TH
Sbjct: 175 IDDLIRSLKKELG------LTSIMVTH 195

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 38/228 (16%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE-------NL 145
           E LKG+N    +GE+ A++G NG+GKSTL     G    + T G V+ KGE       +L
Sbjct: 16  EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG--ILKPTSGEVLIKGEPIKYDKKSL 73

Query: 146 LEMEPEERSLAGLFMSFQSP---VEIPGV-NNIDFLHMAYNARRRKLGQPEIGPIEFYAY 201
           LE+    R   G+   FQ+P   +  P V  ++ F  +        LG  +    E    
Sbjct: 74  LEV----RKTVGIV--FQNPDDQLFAPTVEEDVAFGPL-------NLGLSK---EEVEKR 117

Query: 202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261
           +   L+ + M+  F N+      SGG++KR  I  +  +  ++ +LDE  SGLD      
Sbjct: 118 VKEALKAVGME-GFENK-PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175

Query: 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF---IHIMEDGRIIKTG 306
           + K +  L     ++++ TH   L+    P +   +++M DG+IIK G
Sbjct: 176 IMKLLYDLNKEGITIIISTHDVDLV----PVYADKVYVMSDGKIIKEG 219

Length = 275

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 37/201 (18%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYEVTEGSVVFKGENLLEMEPE 151
           +L  VN  + +GE+  +MG +G GKSTL   ++G     +  T G +    E  L+M P 
Sbjct: 17  LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT-GELWL-NEQRLDMLPA 74

Query: 152 ERSLAGLFMSFQSPVEIPGVN---NIDFL---HMAYNARRRKLGQPEIGPIEFYAYLYPK 205
            +   G  + FQ  +  P ++   N+ F     +  NARR                    
Sbjct: 75  AQRQIG--ILFQDALLFPHLSVGQNLLFALPATLKGNARRNA--------------ANAA 118

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD---- 261
           LER  +     +++     SGG+R R  +L+  +      +LDE  S LDV ALRD    
Sbjct: 119 LERSGL-DGAFHQD-PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV-ALRDQFRQ 175

Query: 262 -VAKAVNGLLTPKNSLLMITH 281
            V   V     P    + +TH
Sbjct: 176 WVFSEVRAAGIP---TVQVTH 193

Length = 213

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 30/241 (12%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L V  +T V    K+  L+G++  +  GE  AI+G +GSGKSTL++++VG   +  T GS
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGS 374

Query: 138 VVFKGENLLEMEPEE--RSLAGLFMSFQSPVEI---PGV--NNIDFLHMAYNARRRKLGQ 190
           V   G +L + + E   + +  L      P ++   PG    NI        AR  +   
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYL------PQDVELFPGTVAENI--------ARFGENAD 420

Query: 191 PE-IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI-LQLAVLGAD-LAIL 247
           PE I      A ++  + RL    D +        SGG+R+R  I L  A+ G   L +L
Sbjct: 421 PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR--IALARALYGDPKLVVL 478

Query: 248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           DE +S LD +  + +A A+  L     ++++ITH   LL  +    I +++DGRI + G+
Sbjct: 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVD--KILVLQDGRIARFGE 536

Query: 308 A 308
            
Sbjct: 537 R 537

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 27/236 (11%)

Query: 77  LLQVTGLTAVIAESKQE--ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
           LL+   L     E K +  +LKGV+L + +GE+ AI+G +GSGKSTL  +L G  +   T
Sbjct: 1   LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PT 58

Query: 135 EGSVVFKGENLLEMEPEERS-LAGLFMSF--QSPVEIPGVNNIDFLHMAYNARRRKLGQP 191
            G V+F G++L ++   ER+ L    + F  Q    +P    ++ + M     ++ + + 
Sbjct: 59  SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA 118

Query: 192 EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251
           +          Y  LE++ ++   +N   +E  SGGER+R  I +  V    L + DE  
Sbjct: 119 K-------ERAYEMLEKVGLE-HRINHRPSE-LSGGERQRVAIARALVNQPSLVLADEPT 169

Query: 252 SGLDVDALRDVAKAVNGLLTPKN-----SLLMITHYRRLLEFIKPTFIHIMEDGRI 302
             LD     + AK +  L+   N     S L++TH   L + +       M+DG++
Sbjct: 170 GNLD----NNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVL--EMKDGQL 219

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 65/254 (25%), Positives = 103/254 (40%), Gaps = 48/254 (18%)

Query: 48  SLNRVTAALSAVDSPLKSSSDGQDEKS---QPLLQVTGLTAVIAESKQEILKGVNLLVNE 104
           +  R+   L A   P+   S          +P L++  L+A    +   +L GV+L +  
Sbjct: 303 AAERIVEVLDA-AGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGA-PPVLDGVSLDLPP 360

Query: 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM-EPEERSLAGLFMS-- 161
           GE  AI+G +GSGKSTL   L G  D    +G V   G  +  + + E R    +     
Sbjct: 361 GERVAILGPSGSGKSTLLATLAGLLD--PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDA 418

Query: 162 --FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERLSMKTD 214
             F + V      N+            +L +P+    E +       L   L  L    D
Sbjct: 419 HLFDTTVR----ENL------------RLARPDATDEELWAALERVGLADWLRALP---D 459

Query: 215 FLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKAVN 267
            L+  + EG    SGGER+R  + +  +  A + +LDE    LD +     L D+  A++
Sbjct: 460 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS 519

Query: 268 GLLTPKNSLLMITH 281
           G        ++ITH
Sbjct: 520 GRTV-----VLITH 528

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 32/228 (14%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           K++++ GV+L V +GE+  ++G NG+GK+T   ++VG    +   G ++  G+++ ++  
Sbjct: 12  KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--VKPDSGKILLDGQDITKLPM 69

Query: 151 EERSLAGLFMSFQSP-------VEIPGVNNID-FLHMAYNARRRKLGQPEIGPIEFYAYL 202
            +R+  G+    Q         VE     NI   L +   +++ +  + E         L
Sbjct: 70  HKRARLGIGYLPQEASIFRKLTVE----ENILAVLEIRGLSKKEREEKLE--------EL 117

Query: 203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
              LE   +    L ++     SGGER+R EI +         +LDE  +G+D  A++D+
Sbjct: 118 ---LEEFHITH--LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172

Query: 263 AKAVNGLLTPKNSLLMIT--HYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
            K +  +L  +   ++IT  + R  L        +I+ +G+++  G  
Sbjct: 173 QKII-KILKDRGIGVLITDHNVRETLSITDR--AYIIYEGKVLAEGTP 217

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 79/277 (28%), Positives = 110/277 (39%), Gaps = 89/277 (32%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDY 131
            QPLL V GLT +    K    + V+  +  GEV  I+G++GSGK+TL   L     PD 
Sbjct: 3   DQPLLSVRGLTKLYGPRKG--CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD- 59

Query: 132 EVTEGSVVFKGE-----NLLEM-EPEERSLA-------------GLFMSFQSPVEIPGVN 172
               G V ++       +L  + E E R L              GL M     V   G  
Sbjct: 60  ---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQ----VSAGG-- 110

Query: 173 NIDFLHMAYNAR-----RRK----LGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG 223
           NI    MA  AR     R      L + EI              R+    D L       
Sbjct: 111 NIGERLMAVGARHYGDIRATAGDWLERVEIDA-----------ARI----DDLPTT---- 151

Query: 224 FSGGERKRNEILQLA---VLGADLAILDEIDSGLDV-------DALRDVAKAVNGLLTPK 273
           FSGG ++R   LQ+A   V    L  +DE   GLDV       D LR       GL+   
Sbjct: 152 FSGGMQQR---LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR-------GLVREL 201

Query: 274 N-SLLMITH---YRRLLEFIKPTFIHIMEDGRIIKTG 306
             +++++TH     RLL       + +M+ GR++++G
Sbjct: 202 GLAVVIVTHDLAVARLL----AHRLLVMKQGRVVESG 234

Length = 258

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 19/232 (8%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
            IL  ++L +  GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   +P  
Sbjct: 16  VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--YVPENGRVLVDGHDLALADPAW 73

Query: 153 -RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
            R   G+ +  Q  V       +NI       +  R        G  +F + L       
Sbjct: 74  LRRQVGVVL--QENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISEL-----PE 126

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
              T    +    G SGG+R+R  I +  +    + I DE  S LD ++   + + ++ +
Sbjct: 127 GYDTIVGEQGA--GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI 184

Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA 321
              + ++++I H  RL        I +ME GRI++ G  S   +L E G  A
Sbjct: 185 CAGR-TVIIIAH--RLSTVKNADRIIVMEKGRIVEQG--SHDELLAENGLYA 231

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 34/250 (13%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVT 134
           +L+VT LT     SK + ++ V+    EGE+  ++G+NG+GK+TL +++     PD    
Sbjct: 1   MLEVTDLTKSY-GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---- 55

Query: 135 EGSVVFKGENLLEMEPEE--RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
            G V   G + +  +P    R +  LF        +    N+ +        R       
Sbjct: 56  SGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSR------- 107

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
               E  A +    +RL +  ++L+R V E FS G +++  I +  V    + +LDE  S
Sbjct: 108 ---KEIKARIAELSKRLQLL-EYLDRRVGE-FSTGMKQKVAIARALVHDPSILVLDEPTS 162

Query: 253 GLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIAT 312
           GLD+   R     +  L     +++  +H  + +E +    I       ++  G      
Sbjct: 163 GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI-------VLHKG-----E 210

Query: 313 VLEEGGYKAI 322
           V+ EG  +A+
Sbjct: 211 VVLEGSIEAL 220

Length = 245

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 30/220 (13%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEE 152
           + GVN  V EGEV   +G NG+GK+T  ++L     P      G+    G +++  EP +
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT----SGTARVAGYDVVR-EPRK 63

Query: 153 -RSLAGLFMSFQSPVEI-PGVNNI----DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
            R   G+   + S  E   G  N+        +  +    +         E        L
Sbjct: 64  VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA-------EEL-------L 109

Query: 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266
           E   +  +  +R V   +SGG R+R +I    +   D+  LDE  +GLD    R +   +
Sbjct: 110 ELFEL-GEAADRPV-GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI 167

Query: 267 NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             L     ++L+ THY    + +    I I++ GRII  G
Sbjct: 168 RALKEEGVTILLTTHYMEEADKLC-DRIAIIDHGRIIAEG 206

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 34/230 (14%)

Query: 89  ESKQEI-LKGVNLLVNEGEVHAIMGKNGSGKSTLSK----VLVGHPDYEVTEGSVVFKGE 143
           ES +++ L  VNL V +GE   I+G+NGSGKST++K    +L+  P    +EG V   G 
Sbjct: 19  ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--P----SEGKVYVDGL 72

Query: 144 NLLEMEP--EERSLAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPE---IGPIE 197
           +  + E   + R+ AG  M FQ+P  +I  V  I    +A+         PE   I P E
Sbjct: 73  DTSDEENLWDIRNKAG--MVFQNPDNQI--VATIVEEDVAFG--------PENLGIPPEE 120

Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257
               +   L+++ M      R+     SGG+++R  I  +  +  +  I DE  + LD  
Sbjct: 121 IRERVDESLKKVGMYE--YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178

Query: 258 ALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             R+V   +  L      ++++ITHY  + E ++   I +M+ G+++  G
Sbjct: 179 GRREVVNTIKELNKKYGITIILITHY--MEEAVEADRIIVMDSGKVVMEG 226

Length = 280

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 76/247 (30%), Positives = 115/247 (46%), Gaps = 42/247 (17%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-- 132
           + +++V  ++    ++    LK V+  V EGE  AI+G NGSGKSTL+K+L G    E  
Sbjct: 3   EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62

Query: 133 -VTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP--------VE---IPGVNNIDFLHMA 180
            +T G +V   E + ++    R   G  M FQ+P        V+     G+ NI      
Sbjct: 63  TITVGGMVLSEETVWDV----RRQVG--MVFQNPDNQFVGATVQDDVAFGLENI------ 110

Query: 181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL 240
                   G P    +E    +   L ++ M  DFLNR  +   SGG+++R  I  +  L
Sbjct: 111 --------GVPREEMVE---RVDQALRQVGM-EDFLNREPHR-LSGGQKQRVAIAGVLAL 157

Query: 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMED 299
             D+ ILDE  S LD    R+V + V  L   K  ++L ITH   L E  +   + +M  
Sbjct: 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH--DLDEAAQADRVIVMNK 215

Query: 300 GRIIKTG 306
           G I++ G
Sbjct: 216 GEILEEG 222

Length = 279

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 60.6 bits (148), Expect = 9e-11
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
             +E+LKG++L V +GEV  I+G +GSGKSTL + L G    E   GS+   GE++ + +
Sbjct: 13  GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDKK 70

Query: 150 --PEERSLAGLFMSFQS 164
              + R   G  M FQ 
Sbjct: 71  DILKLRRKVG--MVFQQ 85

Length = 240

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 70/261 (26%), Positives = 116/261 (44%), Gaps = 47/261 (18%)

Query: 74  SQPLLQVTGLTAVI--AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG---H 128
           + PLL +  L+          E +KG++  +  GE  A++G++GSGKS  +  ++G    
Sbjct: 3   TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62

Query: 129 PDYEVTEGSVVFKGENLLEM-EPEERSLAG--LFMSFQSP-VEIPGVNNID-------FL 177
           P      GS++F GE+LL   E + R + G  + M FQ P   +  ++ I         L
Sbjct: 63  PAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL 122

Query: 178 HMAYN---ARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234
           H   +   AR R L   E+  I       P+ E+       L+   +E  SGG+R+R  I
Sbjct: 123 HRGLSRAAARARALELLELVGI-------PEPEK------RLDAYPHE-LSGGQRQRVMI 168

Query: 235 LQLAVLGADLAILDEIDSGLDV-------DALRDVAKAVNGLLTPKNSLLMITHYRRLLE 287
                   DL I DE  + LDV       D L+++   +        ++L ITH   ++ 
Sbjct: 169 AMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG------MAILFITHDLGIVR 222

Query: 288 FIKPTFIHIMEDGRIIKTGDA 308
                 +++M+ G I++TG  
Sbjct: 223 KFA-DRVYVMQHGEIVETGTT 242

Length = 534

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 62/252 (24%), Positives = 98/252 (38%), Gaps = 51/252 (20%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
           +++   L+  +A   + +L GV+L +  GEV AI+G NG+GKSTL K L G  +     G
Sbjct: 1   MIRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG--ELSPDSG 56

Query: 137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP-GVNNI-DFLHMAYNARRRKLGQPEIG 194
            V   G  L    PEE +     +   S +  P  V  +     + + + R       I 
Sbjct: 57  EVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERI- 115

Query: 195 PIEFYAYLYPKLERLSMKTD---FLNRNVNEGFSGGERKRNEILQLA---------VLGA 242
                        +    TD      R+     SGGE++R   +QLA         V   
Sbjct: 116 -----------AAQALAATDLSGLAGRDYRT-LSGGEQQR---VQLARVLAQLWPPVPSG 160

Query: 243 DLAILDEIDSGLDV-------DALRDVAKAVNGLLTPKNSLLMITHY-RRLLEFIKPTFI 294
               LDE  S LD+          R +A+    +L   + L +   Y  R++        
Sbjct: 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIV-------- 212

Query: 295 HIMEDGRIIKTG 306
            ++  GR+I +G
Sbjct: 213 -LLHQGRVIASG 223

Length = 259

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 28/220 (12%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-R 153
           LK V+  + +G+  +I+G NGSGKST++K+++G    +V  G + +  + + +   E+ R
Sbjct: 25  LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE--KVKSGEIFYNNQAITDDNFEKLR 82

Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
              G+   FQ+P +   V +I    +A+              +E +A  Y ++ R   + 
Sbjct: 83  KHIGIV--FQNP-DNQFVGSIVKYDVAFG-------------LENHAVPYDEMHRRVSEA 126

Query: 214 ----DFLNRNVNE--GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN 267
               D L R   E    SGG+++R  I  +  L   + ILDE  S LD DA +++   V 
Sbjct: 127 LKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR 186

Query: 268 GLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            + +  N +++ ITH   L E ++   + +M  G + K G
Sbjct: 187 KVKSEHNITIISITH--DLSEAMEADHVIVMNKGTVYKEG 224

Length = 269

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 33/194 (17%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEV 133
           PLL++  LT       Q  +  V+L + +GE+ A++G +G GKSTL ++L G   P    
Sbjct: 18  PLLEIRNLTKSF--DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP---- 71

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHM------AYNARRRK 187
           T G ++  G +L  + P +R +    M FQS    P        HM      A+  ++ K
Sbjct: 72  TAGQIMLDGVDLSHVPPYQRPIN---MMFQSYALFP--------HMTVEQNIAFGLKQDK 120

Query: 188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAIL 247
           L + EI      + +   L  + M+ +F  R  ++  SGG+R+R  + +       L +L
Sbjct: 121 LPKAEIA-----SRVNEMLGLVHMQ-EFAKRKPHQ-LSGGQRQRVALARSLAKRPKLLLL 173

Query: 248 DEIDSGLDVDALRD 261
           DE    LD   LRD
Sbjct: 174 DEPMGALD-KKLRD 186

Length = 377

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 41/253 (16%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PD- 130
            +PLL V+GL+ +    K    + V+  +  GEV  I+G++GSGK+TL K + G   PD 
Sbjct: 3   DKPLLSVSGLSKLYGPGKG--CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA 60

Query: 131 ----YEVTEGSVVFKGENLLEM-EPEERSLAGLFMSF--QSPVEIPGVNNIDFLHMAYNA 183
               Y + +G       +L  M E E R L      F  Q+P         D L M  +A
Sbjct: 61  GTVTYRMRDGQPR----DLYTMSEAERRRLLRTEWGFVHQNPR--------DGLRMQVSA 108

Query: 184 ------RRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL 237
                 R   +G    G I   A  +  LE + +  D ++ ++   FSGG ++R +I + 
Sbjct: 109 GGNIGERLMAIGARHYGNIRAEAQDW--LEEVEIDLDRID-DLPRTFSGGMQQRLQIARN 165

Query: 238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITH---YRRLLEFIKPTF 293
            V    L  +DE   GLDV     +   + GL+     +++++TH     RLL       
Sbjct: 166 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA----DR 221

Query: 294 IHIMEDGRIIKTG 306
           + +M+ G+++++G
Sbjct: 222 LMVMKQGQVVESG 234

Length = 258

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 34/215 (15%)

Query: 104 EGEVHAIMGKNGSGKSTLSKVLVG--HPD--YEVTEGSVVFKGENLLEMEPEERSLAGLF 159
             EV  I G +G+GKSTL + + G   PD    V  G+V+F     + + P++R +  +F
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81

Query: 160 MSFQSPVEIPGVNNIDFLHM------AYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
                           F H+      A+  +R++  +  I   E    L   L+ L    
Sbjct: 82  Q-----------QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLL--GLDHL---- 124

Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD-VAKAVNGLLTP 272
             LNR   +  SGGE++R  + +      +L +LDE  S LD  ALR  +   +  +   
Sbjct: 125 --LNRYPAQ-LSGGEKQRVALARALAAQPELLLLDEPFSALD-RALRLQLLPELKQIKKN 180

Query: 273 KN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            N  ++ +TH     E++    I +MEDGR+   G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADR-IVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 20/166 (12%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
            L GV+L + EGE   ++G +G GK+TL +++ G      T G ++  G+++  + P +R
Sbjct: 15  ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE--TPTSGEILLDGKDITNLPPHKR 72

Query: 154 SLAGLFMSFQSPVEIPGVN---NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
               +   FQ+    P +    NI     A+  R +KL + EI        L   L +L 
Sbjct: 73  ---PVNTVFQNYALFPHLTVFENI-----AFGLRLKKLPKAEIKE-RVAEAL--DLVQLE 121

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
               + NR  ++  SGG+++R  I +  V    + +LDE    LD+
Sbjct: 122 ---GYANRKPSQ-LSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 39/239 (16%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTE 135
           L+V  +T          L  ++  V +GE+  ++G NG+GK+T  ++++G   PD     
Sbjct: 1   LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD----S 54

Query: 136 GSVVFKGENLLEME-------PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL 188
           G V+F G+ L           PEER   GL+         P +  ID L   Y A+ + L
Sbjct: 55  GEVLFDGKPLDIAARNRIGYLPEER---GLY---------PKMKVIDQL--VYLAQLKGL 100

Query: 189 GQPEIGP-IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAIL 247
            + E    I+ +      LERL + +++ N+ V E  S G +++ + +   +   +L IL
Sbjct: 101 KKEEARRRIDEW------LERLEL-SEYANKRVEE-LSKGNQQKVQFIAAVIHDPELLIL 152

Query: 248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           DE  SGLD   +  +   +  L     ++++ TH   L+E +    + ++  GR +  G
Sbjct: 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVL-LLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEE 152
           L  ++L V+ GE+  I+G NG+GK+T+  V+ G   PD    EGSV+F G +L  +   +
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD----EGSVLFGGTDLTGLPEHQ 73

Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186
            + AG+   FQ P     +   + L +A    + 
Sbjct: 74  IARAGIGRKFQKPTVFENLTVFENLELALPRDKS 107

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 46/244 (18%)

Query: 82  GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH-PDYEVTEGSVVF 140
           GL A        IL  V+L V  G+V AI+G +GSGK+TL   + G       T G ++F
Sbjct: 10  GLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF 69

Query: 141 KGENLLEMEPEE--RSLAGLFMSFQSPVEIPGVNNIDFLH-MAYNARRRKLGQPEIGPIE 197
            G+     +P++  + +A +    Q  + +PG+   + L   A     RK          
Sbjct: 70  NGQ---PRKPDQFQKCVAYV---RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123

Query: 198 FYAYLYPKLERLSMK----TDFLNRNVNEGFSGGERKRNEI-LQLAVLGADLAILDEIDS 252
                    E + ++    T      V +G SGGER+R  I +QL      L ILDE  S
Sbjct: 124 ---------EDVLLRDLALTRIGGNLV-KGISGGERRRVSIAVQLLWDPKVL-ILDEPTS 172

Query: 253 GLD-------VDALRDVAKAVNGLLTPKNSLLMIT-HYRRLLEFIKPTFIHI--MEDGRI 302
           GLD       V  L  +A+        +N ++++T H  R   F    F  I  +  G I
Sbjct: 173 GLDSFTALNLVSTLSQLAR--------RNRIVILTIHQPRSDLF--RLFDRILLLSSGEI 222

Query: 303 IKTG 306
           + +G
Sbjct: 223 VYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 35/226 (15%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           +   LK ++  + +GE   I+G NG+GKSTL K++ G   Y+ T G V   G        
Sbjct: 39  EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI--YKPTSGKVKVTG-------- 88

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ--PEIGPIEFYAYLYPKLER 208
           +   L  L   F    E+ G  NI    +     R+++ +   EI  IEF A L      
Sbjct: 89  KVAPLIELGAGFDP--ELTGRENIYLRGLILGLTRKEIDEKVDEI--IEF-AEL------ 137

Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAV---LGADLAILDEIDSGLDVDALRDVAKA 265
                DF+++ V   +S G   R   L  +V   +  D+ +LDE+ +  D        + 
Sbjct: 138 ----GDFIDQPVK-TYSSGMYAR---LAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189

Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA 311
           +N L+    ++++++H    ++      I  +E G+I   G     
Sbjct: 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAI-WLEHGQIRMEGSPEEV 234

Length = 249

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 21/203 (10%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
           + +++V  L+       Q  LK VNL +N+GE+ AI+G +G+GKSTL + L G  D   T
Sbjct: 1   EMMIEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PT 57

Query: 135 EGSVVFKGENLLEMEPEE--RSLAGLFMSFQSPVEIPG---VNNIDFLHMAYNARRRKL- 188
            G ++F G  + +++ +E  +    + M FQ    +P    + N+    + Y +  R L 
Sbjct: 58  SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLF 117

Query: 189 GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILD 248
           G       E  A     LER+ +      R      SGG+++R  I +  V    + + D
Sbjct: 118 GLF---SKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQQPKIILAD 172

Query: 249 EIDSGLD-------VDALRDVAK 264
           E  + LD       +D L+D+ +
Sbjct: 173 EPVASLDPESAKKVMDILKDINQ 195

Length = 258

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 16/79 (20%)

Query: 74  SQPLLQVTGLT----AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG-- 127
            + LL++  +T     V A      L  V+L V  GE+ ++ G+NG+GKSTL KVL G  
Sbjct: 2   MEYLLEMKNITKTFGGVKA------LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY 55

Query: 128 -HPDYEVTEGSVVFKGENL 145
            H  Y   EG ++F+GE L
Sbjct: 56  PHGTY---EGEIIFEGEEL 71

Length = 506

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 56/262 (21%)

Query: 74  SQPLLQVTGLT-------AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV 126
           SQPLL V+GL        AV           VNL V E E+ +++G NG+GK+T+   L 
Sbjct: 2   SQPLLSVSGLMMRFGGLLAV---------NNVNLEVREQEIVSLIGPNGAGKTTVFNCLT 52

Query: 127 GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPV----EIPGVNNI-------- 174
           G   Y+ T G+++ +G+++  +   + +  G+  +FQ  V    E+  + N+        
Sbjct: 53  GF--YKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQH-VRLFREMTVIENLLVAQHQQL 109

Query: 175 --DFLH--MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230
                   +   A RR     E   ++  A     LER+ +  +  NR      + G+++
Sbjct: 110 KTGLFSGLLKTPAFRRA----ESEALDRAATW---LERVGL-LEHANRQAGN-LAYGQQR 160

Query: 231 RNEILQLAVLGADLAILDEIDSGL------DVDALRDVAKAVNGLLTPKNSLLMITHYRR 284
           R EI +  V   ++ +LDE  +GL      ++D L    +  + +     ++L+I H  +
Sbjct: 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNV-----TVLLIEHDMK 215

Query: 285 LLEFIKPTFIHIMEDGRIIKTG 306
           L+  I    I+++  G  +  G
Sbjct: 216 LVMGISDR-IYVVNQGTPLANG 236

Length = 255

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 22/208 (10%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L+V GL+       +  L  V+  V  G   A++G NG+GKSTL  +L     Y   EG 
Sbjct: 2   LEVAGLS--FRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRL--YVAQEGQ 57

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIG 194
           +   G +L    P   +LA L + FQ P   +++    N+ + H A +   R   +  I 
Sbjct: 58  ISVAGHDLRR-AP-RAALARLGVVFQQPTLDLDLSVRQNLRY-HAALHGLSRAEARARIA 114

Query: 195 PIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254
            +         L RL +  +  +  V E  +GG R+R EI +  +    L +LDE   GL
Sbjct: 115 EL---------LARLGL-AERADDKVRE-LNGGHRRRVEIARALLHRPALLLLDEPTVGL 163

Query: 255 DVDALRDVAKAVNGLLTPKN-SLLMITH 281
           D  +   +   V  L   +  S+L  TH
Sbjct: 164 DPASRAAITAHVRALARDQGLSVLWATH 191

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 31/200 (15%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEP 150
           E LKG++  + +GE+   +G NG+GK+T  K+L G   P    T G V   G    +   
Sbjct: 35  EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP----TSGEVRVAGLVPWKRRK 90

Query: 151 EERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
           +     G+    ++ +  ++P +++   L   Y+          + P  F      +L+ 
Sbjct: 91  KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYD----------LPPARFKK----RLDE 136

Query: 209 LS--MK-TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV---DALRDV 262
           LS  +   + L+  V +  S G+R R EI    +   ++  LDE   GLDV   + +R+ 
Sbjct: 137 LSELLDLEELLDTPVRQ-LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNF 195

Query: 263 AKAVNGLLTPKNSLLMITHY 282
            K  N       ++L+ +HY
Sbjct: 196 LKEYNRE--RGTTVLLTSHY 213

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 34/230 (14%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEM 148
           K++++  V+L VN GE+  ++G NG+GK+T   ++VG   PD     G ++   E++ ++
Sbjct: 16  KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD----SGKILLDDEDITKL 71

Query: 149 EPEERSLAGLFMSFQSP-------VEIPGVNNID-FLHMAYNARRRKLGQPEIGPIEFYA 200
              +R+  G+    Q         VE    +NI   L +     ++   + E+  +    
Sbjct: 72  PMHKRARLGIGYLPQEASIFRKLTVE----DNIMAVLEIREKDLKKAERKEELDAL---- 123

Query: 201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
                LE   +    L  +     SGGER+R EI +         +LDE  +G+D  A+ 
Sbjct: 124 -----LEEFHITH--LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176

Query: 261 DVAKAVNGLLTPKNSLLMITHY--RRLLEFIKPTFIHIMEDGRIIKTGDA 308
           D+ + +   L  +   ++IT +  R  L+       +I+ DG+++  G  
Sbjct: 177 DIQRII-KHLKDRGIGVLITDHNVRETLDICDR--AYIISDGKVLAEGSP 223

Length = 243

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 25/222 (11%)

Query: 97  GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEERS 154
            +NL +  GEV A++G++GSGKS     ++G     +  T G ++  G  LL +    R 
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63

Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARR--RKLGQPEIGPIE-----FYAYLYPKLE 207
           +A      Q+P      N +    M  +A    R LG+              A   P  E
Sbjct: 64  IA---TIMQNP--RTAFNPL--FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPE 116

Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN 267
            +  K  F         SGG  +R  I    +L     I DE  + LDV     V K + 
Sbjct: 117 EVLKKYPFQ-------LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169

Query: 268 GLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
            L       +L+ITH   ++  I    + +M+DGRI++ G  
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIA-DEVAVMDDGRIVERGTV 210

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 54/245 (22%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L+ +N  +  G+  A++G++GSGKST++ +L     Y++ EG ++  G +L      + +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF--YDIDEGEILLDGHDL-----RDYT 411

Query: 155 LAGL-----FMS-----FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYP 204
           LA L      +S     F   +     NNI     AY AR  +  + +I           
Sbjct: 412 LASLRNQVALVSQNVHLFNDTI----ANNI-----AY-ARTEQYSREQI----------E 451

Query: 205 KLERLSMKTDFLNRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSG 253
           +  R++   DF+N+ ++ G            SGG+R+R  I +  +  + + ILDE  S 
Sbjct: 452 EAARMAYAMDFINK-MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510

Query: 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV 313
           LD ++ R +  A++ L   + SL+ I H  RL    K   I ++EDG I++ G  + A +
Sbjct: 511 LDTESERAIQAALDELQKNRTSLV-IAH--RLSTIEKADEILVVEDGEIVERG--THAEL 565

Query: 314 LEEGG 318
           L + G
Sbjct: 566 LAQNG 570

Length = 582

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
            +L+   L+  +    + +L  V+L +  GEV AI+G NG+GKSTL + L G  +     
Sbjct: 1   AMLEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG--ELSPDS 56

Query: 136 GSVVFKGENLLEMEPEERS 154
           G V   G  L +  P E +
Sbjct: 57  GEVRLNGRPLADWSPAELA 75

Length = 258

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 62/222 (27%)

Query: 110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP 169
           ++G +G GK+TL ++L G    +   GS++  GE++  + P  R +    M FQS    P
Sbjct: 1   LLGPSGCGKTTLLRLLAGFE--QPDSGSIMLDGEDVTNVPPHLRHIN---MVFQSYALFP 55

Query: 170 GVNNIDFLHM------AYNARRRKLGQPEIGPIEFYAYLYPKLERLSM--KTDFLNRNVN 221
                   HM      A+  + RK+ + EI P          LE L +    +F +R  +
Sbjct: 56  --------HMTVEENVAFGLKMRKVPRAEIKP--------RVLEALRLVQLEEFADRKPH 99

Query: 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
           +  SGG+++R  + +  V    + +LDE  S LD   LRD                M   
Sbjct: 100 Q-LSGGQQQRVALARALVFKPKILLLDEPLSALDKK-LRD---------------QMQLE 142

Query: 282 YRRLLEFIKPTF----------------IHIMEDGRIIKTGD 307
            + + E +  TF                I IM  G+I + G 
Sbjct: 143 LKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGT 184

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 33/197 (16%)

Query: 75  QPLLQVTGL-------TAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
           + LL+V  L       T +      E +K V+  + EG+  AI+G+NGSGKSTL+K+L G
Sbjct: 2   ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG 61

Query: 128 HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK 187
               E T G ++     L   +   RS   + M FQ P            + + N R R 
Sbjct: 62  M--IEPTSGEILINDHPLHFGDYSFRS-KRIRMIFQDP------------NTSLNPRLR- 105

Query: 188 LGQPEIGPIEFYAYLYPK---------LERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
           +GQ    P+     L P+         L  + +  D  N   +   + G+++R  + +  
Sbjct: 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHM-LAPGQKQRVALARAL 164

Query: 239 VLGADLAILDEIDSGLD 255
           +L   + I DE  + LD
Sbjct: 165 ILRPKIIIADEALASLD 181

Length = 267

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 15/216 (6%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
           +L  ++L +  GE+ A++GK+G GK+TL + + G        G +     +L    P +R
Sbjct: 20  VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79

Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
            LA   + FQ+    P +   D  ++A+  R +K+ + +I      A    KL  L    
Sbjct: 80  GLA---LLFQNYALFPHLKVED--NVAFGLRAQKMPKADIAERVADAL---KLVGLG--- 128

Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL--LT 271
           D       +  SGG ++R  I +   +  D+ +LDE  S LD +   ++ + +  L    
Sbjct: 129 DAAAHLPAQ-LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187

Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           P+ ++L +TH  +           IM+DGR+   G+
Sbjct: 188 PELTILCVTH-DQDDALTLADKAGIMKDGRLAAHGE 222

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE 143
           L  ++     G+VHA+MG+NG+GKSTL K+L G  +Y+   GS++  G+
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSG--NYQPDAGSILIDGQ 66

Length = 501

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 19/124 (15%)

Query: 76  PLLQVTGLTAVIAESKQ----EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HP 129
           PLL    +      SKQ    E+LKG++  ++ GEVHA++G NG+GKSTL K++ G   P
Sbjct: 10  PLLCARSI------SKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP 63

Query: 130 DYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN---NIDFLHMAYNARRR 186
           D     G++   G     + P +    G+++  Q P+  P ++   NI F      A  +
Sbjct: 64  D----SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQ 119

Query: 187 KLGQ 190
           K+ Q
Sbjct: 120 KMKQ 123

Length = 510

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 20/210 (9%)

Query: 100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVFKGENLLEMEPEERSLAGL 158
           L   +GE+ AI+G +GSGKSTL  ++ G   +E    G V+  G ++    P +R ++ L
Sbjct: 19  LTFAQGEITAIVGPSGSGKSTLLNLIAG---FETPQSGRVLINGVDVTAAPPADRPVSML 75

Query: 159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR 218
           F        +    N+  L ++   +     +  I        L    +RL         
Sbjct: 76  FQENNLFAHLTVEQNVG-LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-------- 126

Query: 219 NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR-DVAKAVNGLLTP-KNSL 276
                 SGGER+R  + ++ V    + +LDE  + LD  ALR ++   V  L    K ++
Sbjct: 127 ---GELSGGERQRVALARVLVRDKPVLLLDEPFAALD-PALRAEMLDLVLDLHAETKMTV 182

Query: 277 LMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           LM+TH     + +    + + ++GRI   G
Sbjct: 183 LMVTHQPEDAKRLAQRVVFL-DNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 58/232 (25%), Positives = 113/232 (48%), Gaps = 23/232 (9%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
            IL  ++L +       I+G +GSGKSTL+K+LVG   ++   G ++  G +L ++   +
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDI---D 542

Query: 153 RSLAGLFMSF--QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           R     F+++  Q P    G + ++ L +     +  + Q EI      A +   +E + 
Sbjct: 543 RHTLRQFINYLPQEPYIFSG-SILENLLL---GAKENVSQDEIWAACEIAEIKDDIENMP 598

Query: 211 M--KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
           +  +T+      +   SGG+++R  + +  +  + + ILDE  S LD    +   K VN 
Sbjct: 599 LGYQTELSEEGSS--ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK---KIVNN 653

Query: 269 LLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
           LL  ++ +++ + H  RL    +   I +++ G+II+ G  S   +L+  G+
Sbjct: 654 LLNLQDKTIIFVAH--RLSVAKQSDKIIVLDHGKIIEQG--SHDELLDRNGF 701

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 54/226 (23%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L+V  ++     ++  +L+ V+  +  GE  AI+G +GSGKSTL+++             
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARL------------- 47

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
                            + GL       V + G + I       N     +G        
Sbjct: 48  -----------------ILGLLRPTSGRVRLDGAD-ISQWDP--NELGDHVG-------- 79

Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA-DLAILDEIDSGLDV 256
              YL    E  S     +  N+    SGG+R+R   L  A+ G   + +LDE +S LDV
Sbjct: 80  ---YLPQDDELFS---GSIAENI---LSGGQRQR-LGLARALYGNPRILVLDEPNSHLDV 129

Query: 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302
           +  R + +A+  L     + ++I H    L       I ++EDGR+
Sbjct: 130 EGERALNQAIAALKAAGATRIVIAHRPETLASADR--ILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 67/246 (27%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL-----EME 149
           + G++L +  G+   ++G++GSGKSTL   L+       ++G + F G+++      EM 
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLR---LIPSQGEIRFDGQDIDGLSRKEMR 359

Query: 150 PEERSLAGLFMSFQSP-------------------VEIPGVNNIDFLHMAYNARRRKLGQ 190
           P  R +    + FQ P                   V  P ++  +       A       
Sbjct: 360 PLRRRMQ---VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA------- 409

Query: 191 PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250
                          LE + +     NR  +E FSGG+R+R  I +  +L  +L +LDE 
Sbjct: 410 ---------------LEEVGLDPATRNRYPHE-FSGGQRQRIAIARALILKPELILLDEP 453

Query: 251 DSGLD-------VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303
            S LD       +D LRD+ +  +GL     S L I+H   ++  +    I +M DG+I+
Sbjct: 454 TSALDRSVQAQVLDLLRDLQQK-HGL-----SYLFISHDLAVVRALCHRVI-VMRDGKIV 506

Query: 304 KTGDAS 309
           + G   
Sbjct: 507 EQGPTE 512

Length = 534

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 49/263 (18%)

Query: 74  SQPLLQVTGLTAVIAESKQE--ILKGVNLLVNEGEVHAIMGKNGSGKS--TLSKV-LVGH 128
           +QPLL +  L+    + +    ++  V+L +  GE  A++G++GSGKS   LS + L+  
Sbjct: 2   TQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61

Query: 129 PDYEVTEGSVVFKGENLLEM-EPEERSLAG--LFMSFQSP-VEIPGVNNID-------FL 177
           P      G + F GE+LL   E   R + G  + M FQ P V +  ++ ++        L
Sbjct: 62  PPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSL 121

Query: 178 HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK------TDFLNRNVNEGFSGGERKR 231
           H      RR+  + EI            L+R+ ++      TD+ ++      SGGER+R
Sbjct: 122 H---RGMRREAARGEI---------LNCLDRVGIRQAAKRLTDYPHQ-----LSGGERQR 164

Query: 232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITH----YRRLL 286
             I    +   +L I DE  + LDV     + + +  L    N  LL ITH     R+L 
Sbjct: 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLA 224

Query: 287 EFIKPTFIHIMEDGRIIKTGDAS 309
           + +      +M++GR ++   A+
Sbjct: 225 DRVA-----VMQNGRCVEQNRAA 242

Length = 529

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 28/187 (14%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
            PL+++ G++       +E++  ++L +N GE   ++G +G GK+T+ +++ G       
Sbjct: 12  SPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE--TPD 67

Query: 135 EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHM------AYNARRRKL 188
            G ++  G+++  +  E R +  +F S+             F HM      A+  R +K 
Sbjct: 68  SGRIMLDGQDITHVPAENRHVNTVFQSYAL-----------FPHMTVFENVAFGLRMQKT 116

Query: 189 GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILD 248
              EI P    A    +LE      +F  R  ++  SGG+++R  I +  V    + +LD
Sbjct: 117 PAAEITPRVMEALRMVQLE------EFAQRKPHQ-LSGGQQQRVAIARAVVNKPKVLLLD 169

Query: 249 EIDSGLD 255
           E  S LD
Sbjct: 170 ESLSALD 176

Length = 375

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 38/203 (18%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
              E+L+ +NL V +GE  AI+G +G GKSTL +++ G      T G V+  G  +    
Sbjct: 14  GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPVTGPG 71

Query: 150 PEERSLAGLFMSFQSPVEIP---GVNNIDF-LHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
           P+          FQ    +P    ++N+   L +   ++     +               
Sbjct: 72  PDIG------YVFQEDALLPWLTVLDNVALGLELRGKSKAEARER-------AKEL---- 114

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV-------DA 258
           LE + +   F ++  ++  SGG R+R  I +       L +LDE    LD        D 
Sbjct: 115 LELVGLA-GFEDKYPHQ-LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172

Query: 259 LRDVAKAVNGLLTPKNSLLMITH 281
           L  + +        + ++L++TH
Sbjct: 173 LLRLWE------ETRKTVLLVTH 189

Length = 248

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 44/228 (19%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEE 152
           LK V+L V  G+   I+G  GSGKS L + + G   PD     G ++  G+++  + PE+
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD----SGKILLNGKDITNLPPEK 70

Query: 153 RSLAGLFMSFQSPVEIPGVN---NIDFLHMAYNARRRKLGQPEIGP--IEFYAYLYPKLE 207
           R ++ +    Q+    P +    NI     AY  ++RK+ + EI    +E    L   ++
Sbjct: 71  RDISYV---PQNYALFPHMTVYKNI-----AYGLKKRKVDKKEIERKVLEIAEML--GID 120

Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV----DALRDVA 263
            L      LNR   E  SGGE++R  I +  V+   + +LDE  S LDV        ++ 
Sbjct: 121 HL------LNRKP-ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173

Query: 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTF----IHIMEDGRIIKTGD 307
           K           +L +TH     +F +       + IM +G++I+ G 
Sbjct: 174 KIRKEFGVT---VLHVTH-----DFEEAWALADKVAIMLNGKLIQVGK 213

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 71/263 (26%)

Query: 77  LLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYE 132
           ++++  ++ V  ++  ++  LK V+L V +GE+  I+G++G+GKSTL + + G   P   
Sbjct: 1   MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--- 57

Query: 133 VTEGSVVFKGENLLEMEPEERSLA----GLFMSFQS---------------PVEIPGVNN 173
            T GSV+  G +L  +  +E   A    G  M FQ                P+EI GV  
Sbjct: 58  -TSGSVLVDGTDLTLLSGKELRKARRRIG--MIFQHFNLLSSRTVFENVALPLEIAGVP- 113

Query: 174 IDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233
                 A    R                   +L  L  K D     +    SGG+++R  
Sbjct: 114 -----KAEIEER--------------VLELLELVGLEDKADAYPAQL----SGGQKQRVG 150

Query: 234 ILQLAVLGADLAILDEIDSGLD-------VDALRDVAKAVNGLLTPKNSLLMITHYRRLL 286
           I +       + + DE  S LD       +  LRD+ + +   LT    +++ITH    +
Sbjct: 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELG--LT----IVLITHE---M 201

Query: 287 EFIKP--TFIHIMEDGRIIKTGD 307
           E +K     + +ME G +++ G 
Sbjct: 202 EVVKRICDRVAVMEKGEVVEEGT 224

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 57/249 (22%)

Query: 87  IAESKQEILKG---------VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
             +SK+EILK          V+L V EGE+  IMG +GSGKSTL + +      E T G 
Sbjct: 23  KGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--IEPTSGK 80

Query: 138 VVFKGENLLEMEPEE-RSLAG--LFMSFQS---------------PVEIPGVNNIDFLHM 179
           V+  G+++  M  +E R L    + M FQS                +E+ GV        
Sbjct: 81  VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPR------ 134

Query: 180 AYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239
               R  +  +               LE + ++  + ++  +E  SGG ++R  + +   
Sbjct: 135 --AEREERAAE--------------ALELVGLE-GWEHKYPDE-LSGGMQQRVGLARALA 176

Query: 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIK-PTFIHIM 297
           +  D+ ++DE  S LD    R++   +  L    + +++ ITH   L E ++    I IM
Sbjct: 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH--DLDEALRLGDRIAIM 234

Query: 298 EDGRIIKTG 306
           +DGR+++ G
Sbjct: 235 KDGRLVQVG 243

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 56/259 (21%)

Query: 76  PLLQVTGLT-------AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG- 127
            LL V+GL+              Q +L  V+L +  GE  A++G++G GKSTL+++LVG 
Sbjct: 2   TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61

Query: 128 -HPDYEVTEGSVVFKGENLLEMEPEERSLAGLF-----MSFQSPVEIPGVNNIDFLHMAY 181
             P    ++G+V ++GE L ++    R+    F     M FQ                A 
Sbjct: 62  ESP----SQGNVSWRGEPLAKL---NRAQRKAFRRDIQMVFQDS---IS---------AV 102

Query: 182 NAR---RRKLGQP-----EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233
           N R   R  + +P      +   E  A     L  + +    L++   +  SGG+ +R  
Sbjct: 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ-LSGGQLQRVC 161

Query: 234 ILQLAVLGADLAILDEIDSGLDV----DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI 289
           + +   +   L ILDE  S LD+      +R + K      T   + L ITH  RL+E  
Sbjct: 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT---ACLFITHDLRLVER- 217

Query: 290 KPTFIH---IMEDGRIIKT 305
              F     +M++G+I++T
Sbjct: 218 ---FCQRVMVMDNGQIVET 233

Length = 268

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
              +LKG++L V +GEV  I+G +GSGKSTL + +      E   G+++  G  L + + 
Sbjct: 12  DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE--EPDSGTIIIDGLKLTDDKK 69

Query: 151 EERSL-AGLFMSFQS 164
               L   + M FQ 
Sbjct: 70  NINELRQKVGMVFQQ 84

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 41/236 (17%)

Query: 88  AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147
              K+  L G++L + EG+   ++G NG+GKSTL   + G  D + T G ++  G ++ +
Sbjct: 16  PLEKR-ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG--DLKPTSGQILIDGVDVTK 72

Query: 148 MEPEERSLAGLFMS--FQSPV-----EIPGVNNIDF---------LHMAYNARRRKLGQP 191
               +R      ++  FQ P+     E+    N+           L  A N RRR   + 
Sbjct: 73  KSVAKR---ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRE 129

Query: 192 EIGPIEFYAYLYPKLE-RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250
            +      A L   LE RLS +   L        SGG+R+   +L   +    + +LDE 
Sbjct: 130 RL------ARLGLGLENRLSDRIGLL--------SGGQRQALSLLMATLHPPKILLLDEH 175

Query: 251 DSGLDVDALRDVAKAVNGLLTPKN-SLLMITHY-RRLLEFIKPTFIHIMEDGRIIK 304
            + LD      V +    ++     + LM+TH     L++       ++  G+I+ 
Sbjct: 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI--MLHSGKIVL 229

Length = 263

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 35/229 (15%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
             +E L  +N +       A++G NG+GKSTL +   G    + T GSV+ +GE + +  
Sbjct: 15  GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG--ILKPTSGSVLIRGEPITKEN 72

Query: 150 PEE-RSLAGLFMSFQSP---VEIPGV-NNIDFLHMAYNARRRKLGQPEIGPI------EF 198
             E R   GL   FQ+P   +  P V  +I F                 GPI      E 
Sbjct: 73  IREVRKFVGLV--FQNPDDQIFSPTVEQDIAF-----------------GPINLGLDEET 113

Query: 199 YAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
            A+       +    +  +R V    SGGE+KR  I  +  +   + +LDE  +GLD   
Sbjct: 114 VAHRVSSALHMLGLEELRDR-VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172

Query: 259 LRDVAKAVNGL-LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           ++++   +N L  T   +++  TH   L+  +   +I++M+ GRI+  G
Sbjct: 173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMA-DYIYVMDKGRIVAYG 220

Length = 277

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 35/223 (15%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           +  +L + G++      K   L  ++  V+ GE+  ++G NG+GK+TL  V+ G      
Sbjct: 2   NPIILYLDGVSVSFGGFKA--LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RP 57

Query: 134 TEGSVVFKG-ENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
            EG V+F G  +L ++     + AG+   FQ P     +   + L +A N  +       
Sbjct: 58  QEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKS------ 111

Query: 193 IGPIEFYAYLYPKLE--------------RLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
                 +A L+ +L                L  + D L   +    S G+++  EI  L 
Sbjct: 112 -----VFASLFARLRAEERRRIDELLATIGLGDERDRLAALL----SHGQKQWLEIGMLL 162

Query: 239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
                L +LDE  +G+        A+ +   L  K+S+L++ H
Sbjct: 163 AQDPKLLLLDEPVAGMTDAETEKTAELLKS-LAGKHSILVVEH 204

Length = 249

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 73  KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE 132
             Q  L V  LTA     K+ ILKG++  +  GE   I+G +GSGKSTL+++LVG   + 
Sbjct: 330 APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG--IWP 387

Query: 133 VTEGSVVFKGENLLEMEPEE 152
            T GSV   G +L + + E+
Sbjct: 388 PTSGSVRLDGADLRQWDREQ 407

Length = 580

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 23/197 (11%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
              +EILK +++    G ++ I+G +G+GKSTL K++  +   + TEGS++  G ++  +
Sbjct: 13  SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTI 70

Query: 149 EP-EERSLAGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
           +  + R   G  M FQ P    G   +NI++  M         G+  +  +E+Y      
Sbjct: 71  DVIDLRRKIG--MVFQQPHLFEGTVKDNIEYGPMLK-------GEKNVD-VEYY------ 114

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
           L  + +  ++  R+V    SGGE +R  I +      ++ +LDE  S LD  +   + + 
Sbjct: 115 LSIVGLNKEYATRDVKN-LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173

Query: 266 VNGLLTPKN-SLLMITH 281
           +  L    N +++ ITH
Sbjct: 174 IVKLKNKMNLTVIWITH 190

Length = 241

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 21/240 (8%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG---HPDYEV 133
           LL++ G+       K   L G++L V  GE   + G+NG+GKSTL K+L G   H  +  
Sbjct: 1   LLEMKGIVKTFGGVKA--LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW-- 56

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
            +G + + G  L      +   AG+ +  Q    +P ++  + + +       ++  P  
Sbjct: 57  -DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG-----NEITLP-- 108

Query: 194 GPIEFYAYLYPK----LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDE 249
           G    Y  +Y +    L  L +  D + R V + + GG+++  EI +     A L ILDE
Sbjct: 109 GGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD-YGGGQQQLVEIAKALNKQARLLILDE 167

Query: 250 IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
             S L       +   +  L     + + I+H    ++ +  T I ++ DG+ + T D S
Sbjct: 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDT-ICVIRDGQHVATKDMS 226

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 23/229 (10%)

Query: 83  LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
           L  V  E +   ++  +L V +GE+ AIMG +G+GKSTL  ++ G    E   GS+    
Sbjct: 3   LDKVRYEYEHLPME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGF--IEPASGSIKVND 59

Query: 143 ENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYL 202
           ++   + P +R ++ LF            NN+ F H+     R+ +G      ++  A  
Sbjct: 60  QSHTGLAPYQRPVSMLFQE----------NNL-FAHLTV---RQNIGLGLHPGLKLNAEQ 105

Query: 203 YPKLERLSMKT---DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
             K+   + +    D+L+R   +  SGG+R+R  + +  V    + +LDE  S LD    
Sbjct: 106 QEKVVDAAQQVGIADYLDRLPEQ-LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164

Query: 260 RDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
            ++   V  L + +  +LLM+TH+      I  + I ++  G+I    D
Sbjct: 165 EEMLALVKQLCSERQRTLLMVTHHLSDARAIA-SQIAVVSQGKIKVVSD 212

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 74  SQPLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY 131
           ++ LLQ   L     E     ++L  V+  + EGE+ AI+G +GSGKSTL  +L G    
Sbjct: 2   NKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-- 59

Query: 132 EVTEGSVVFKGENLLEM 148
             T G V+F G+ + ++
Sbjct: 60  TPTSGDVIFNGQPMSKL 76

Length = 233

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 29/209 (13%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTE 135
           L    L     E  + + +G++  +N GE   + G NG GK+TL ++L G   PD     
Sbjct: 1   LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD----S 54

Query: 136 GSVVFKGENLLEMEPE-ERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPE 192
           G V + G  L E   E  R++  L++     +  E+  + N+ F    +   +R +    
Sbjct: 55  GEVRWNGTALAEQRDEPHRNI--LYLGHLPGLKPELSALENLHFWAAIHGGAQRTIED-- 110

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
                        L  + + T F +    +  S G+++R  + +L +  A L ILDE  +
Sbjct: 111 ------------ALAAVGL-TGFEDLPAAQ-LSAGQQRRLALARLWLSRAPLWILDEPTT 156

Query: 253 GLDVDALRDVAKAVNGLLTPKNSLLMITH 281
            LD   +  +A  +   L     +L+ TH
Sbjct: 157 ALDKAGVALLAGLLRAHLARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 7/97 (7%)

Query: 76  PLLQVTGLTAVIAESKQ--EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDY 131
           PLL +  LT     S+   + +  V++ +NEGE+  ++G++GSGKS ++K + G    ++
Sbjct: 2   PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNW 61

Query: 132 EVTEGSVVFKGENLLEMEPEE-RSLAG--LFMSFQSP 165
            VT   + F   +LL + P E R L G  + M FQ P
Sbjct: 62  RVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98

Length = 330

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE 143
           L  VNL V    +HA+MG+NG+GKSTL K L G   Y+   GS++F+G+
Sbjct: 14  LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG--IYQKDSGSILFQGK 60

Length = 491

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 21/233 (9%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
            IL G++  +  G+  AI+G++G+GKST+ ++L     Y+V  GS+   G+++ ++  + 
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF--YDVNSGSITIDGQDIRDVTQQS 334

Query: 153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
            R   G+      P +    N+    ++ Y   R      E+G     A ++  ++ L  
Sbjct: 335 LRRAIGIV-----PQDTVLFNDTIAYNIKYG--RPDATAEEVGAAAEAAQIHDFIQSLP- 386

Query: 212 KTDFLNRNVNE-GF--SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
             +  +  V E G   SGGE++R  I +  +    + ILDE  S LD    + +  A+  
Sbjct: 387 --EGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR- 443

Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA 321
            ++   + L+I H  RL   I    I ++++GRI++ G      +L  GG  A
Sbjct: 444 EVSAGRTTLVIAH--RLSTIIDADEIIVLDNGRIVERGTH--EELLAAGGLYA 492

Length = 497

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 50.5 bits (122), Expect = 7e-08
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           +++  L+       + +LK ++L +N G+   ++G+NG+GKSTL K++ G  + E  EG 
Sbjct: 1   IELENLS--KTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG--ELEPDEGI 56

Query: 138 V 138
           V
Sbjct: 57  V 57

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 74  SQPLLQVTGLTAVIAESKQE--ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY 131
           ++ +++V  L   + + + E  IL GV L+V  GE  A++G++GSGKSTL  +L G  D 
Sbjct: 3   AENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD- 61

Query: 132 EVTEGSVVFKGENLLEMEPEERSL---AGLFMSFQSPVEIPGVN 172
             + G V   G+ L +M+ E R+      +   FQS + IP +N
Sbjct: 62  -GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN 104

Length = 228

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
           V  GE+  ++G NG+GKSTL   + G        GS+ F G+ L      E +    ++S
Sbjct: 19  VRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLS 75

Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
            Q          +             L QP+    E  A    ++       D L R+VN
Sbjct: 76  QQQTPPF----AMPVFQYL------TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVN 125

Query: 222 EGFSGGERKR----NEILQL---AVLGADLAILDEIDSGLDV 256
           +  SGGE +R      +LQ+         L +LDE  + LDV
Sbjct: 126 Q-LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166

Length = 248

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 54/194 (27%), Positives = 72/194 (37%), Gaps = 44/194 (22%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           +S +++LK V+     GE+ AIMG +G+GKSTL   L G        G V+  G  L + 
Sbjct: 19  KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR 78

Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
               R + G                 D +       R  L         F A    KL  
Sbjct: 79  SF--RKIIGYVPQ-------------DDILHPTLTVRETL--------MFAA----KLRG 111

Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEI-LQLAVLGADLAILDEIDSGLDVDALRDVAKAVN 267
           LS               GGERKR  I L+L V    L  LDE  SGLD  +   V   + 
Sbjct: 112 LS---------------GGERKRVSIALEL-VSNPSLLFLDEPTSGLDSSSALQVMSLLR 155

Query: 268 GLLTPKNSLLMITH 281
            L     +++   H
Sbjct: 156 RLADTGRTIICSIH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 46/226 (20%)

Query: 99  NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVFKGENLLEMEPEERSLAG 157
           +L V  GE+ AI+G +G+GKSTL  ++ G   +E    G ++  G +     P ER ++ 
Sbjct: 19  DLTVPAGEIVAILGPSGAGKSTLLNLIAG---FETPASGEILINGVDHTASPPAERPVS- 74

Query: 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL-----ERLSMK 212
             M FQ        NN+ F H+   A+   LG            L P L     +R  ++
Sbjct: 75  --MLFQE-------NNL-FAHLTV-AQNIGLG------------LSPGLKLNAEQREKVE 111

Query: 213 T--------DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264
                     FL R   E  SGG+R+R  + +  V    + +LDE  S LD  ALR    
Sbjct: 112 AAAAQVGLAGFLKRLPGE-LSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEML 169

Query: 265 A-VNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
           A V+ L    K +LLM+TH+      I    +  +++GRI   G  
Sbjct: 170 ALVSQLCDERKMTLLMVTHHPEDAARIADRVV-FLDNGRIAAQGST 214

Length = 231

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 15/217 (6%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
             ++++L  +NL +N GE+  + G +GSGK+TL  ++ G     V EGS+   G+ L   
Sbjct: 15  SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL--RSVQEGSLKVLGQELYGA 72

Query: 149 EPEERSLA--GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
             +E       +   FQ        N + FL    N +     QP +   E        L
Sbjct: 73  SEKELVQLRRNIGYIFQ------AHNLLGFLTARQNVQMALELQPNLSYQEARERARAML 126

Query: 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266
           E + +  D L+       SGG+++R  I +  V    L + DE  + LD  + RDV + +
Sbjct: 127 EAVGLG-DHLDYY-PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184

Query: 267 NGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRI 302
             L   +  ++L++TH  R+L+ +    +H MEDG++
Sbjct: 185 QKLAREQGCTILIVTHDNRILD-VADRIVH-MEDGKL 219

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 22/241 (9%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVV-FKGENLLEMEPE 151
           ILK ++ L+  GE+  ++G+ GSG STL K +  + D + +    V+ + G    E++  
Sbjct: 76  ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG-QPEIGPIEFYAYLYPKLERLS 210
            R    +  + ++ V  P +   + L  A  AR +    +P+    E YA     +  + 
Sbjct: 136 YR--GDVVYNAETDVHFPHLTVGETLDFA--ARCKTPQNRPDGVSREEYA---KHIADVY 188

Query: 211 MKTDFL----NRNV-NE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
           M T  L    N  V N+   G SGGERKR  I + ++ GA +   D    GLD     + 
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248

Query: 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTF--IHIMEDGRIIKTGDASIA-TVLEEGGY 319
            +A+       ++  ++  Y +  +     F  + ++ +G  I  G A  A    E+ G+
Sbjct: 249 IRALKTSANILDTTPLVAIY-QCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF 307

Query: 320 K 320
           K
Sbjct: 308 K 308

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
           Q LLQ+ G+       K   L G  L V  G V A++G+NG+GKST+ KVL G   Y   
Sbjct: 2   QALLQLKGIDKAFPGVKA--LSGAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRD 57

Query: 135 EGSVVFKGENLLEMEPEERSLAGL 158
            GS+++ G+ +    P+    AG+
Sbjct: 58  AGSILYLGKEVTFNGPKSSQEAGI 81

Length = 501

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL---VGHPDYEVTEGSVVFKGENLLE 147
            +  LK +NL + + +V A++G +G GKSTL + L            EG V+  G+N+ +
Sbjct: 19  DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78

Query: 148 ME---PEERSLAGLFMSFQSPVEIP 169
            +    E R   G  M FQ P   P
Sbjct: 79  PKVDVVELRRRVG--MVFQKPNPFP 101

Length = 253

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 24/167 (14%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPE 151
           +   ++  +N GE   I G NG+GK+TL ++L G   PD     G V ++GE +     E
Sbjct: 17  LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD----AGEVYWQGEPIQN-VRE 71

Query: 152 ERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
               A L++  Q  +  E+  + N+ F    +               E  A +   L   
Sbjct: 72  SYHQALLYLGHQPGIKTELTALENLHFWQRFHG------SGNAATIWEALAQV--GL--- 120

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
                  +  V +  S G+++R  + +L +  A L ILDE  + LD 
Sbjct: 121 ---AGLEDLPVGQ-LSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163

Length = 209

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 46/231 (19%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-- 152
           +   +L + +GE+  IMG +GSGKST  ++L  +   E T G +   GEN+++  P E  
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRML--NRLIEPTAGQIFIDGENIMKQSPVELR 66

Query: 153 ----RSLAGLFMSFQSPVEIPGVNNIDFLH--MAYNARRRK---LGQPEIGPIEFYAYLY 203
               + +  +F  F     +  + N       + +  + RK   L   ++  +E Y + Y
Sbjct: 67  EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY 126

Query: 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD-------V 256
           P                 +  SGG ++R  + +      D+ ++DE  S LD        
Sbjct: 127 P-----------------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQ 169

Query: 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK-PTFIHIMEDGRIIKTG 306
           D L+ +   +        +++ ITH   L E I+    I IM+ G I++ G
Sbjct: 170 DELKKLQATLQ------KTIVFITH--DLDEAIRIGDRIVIMKAGEIVQVG 212

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 24/236 (10%)

Query: 77  LLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYE 132
           ++    LT    + K+ +  + GV+  V  GEV  ++G NG+GK+T  ++L G   PD  
Sbjct: 1   MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-- 58

Query: 133 VTEGSVVFKGENLLEMEPEE--RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ 190
              G     G ++++ EP E  R L  +  S      +    N+++    Y  +      
Sbjct: 59  --AGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD---- 111

Query: 191 PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250
                 E  A L    +RL M+ + L+R V  GFS G R++  I +  V    + +LDE 
Sbjct: 112 ------ELTARLEELADRLGME-ELLDRRV-GGFSTGMRQKVAIARALVHDPPVLLLDEP 163

Query: 251 DSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            +GLDV A R + + +  L      +L  TH  + +E +    + ++  GR++  G
Sbjct: 164 TTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVV-VLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 57/252 (22%)

Query: 79  QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV 138
             TG   V A      L  V+L + +GE+  I+G +G+GKSTL +++        T GSV
Sbjct: 12  GQTGTGTVTA------LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE--RPTSGSV 63

Query: 139 VFKGENLLEMEPEE----RSLAGLFMSFQSP-------VEIPGVNNIDF-LHMAYNARRR 186
              G++L  +   E    R   G  M FQ         V      N+ F L +A   +  
Sbjct: 64  FVDGQDLTALSEAELRQLRQKIG--MIFQHFNLLSSRTVF----ENVAFPLELAGVPKA- 116

Query: 187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAI 246
                     E    +   LE + + +D  +R   +  SGG+++R  I +       + +
Sbjct: 117 ----------EIKQRVAELLELVGL-SDKADRYPAQ-LSGGQKQRVAIARALANNPKILL 164

Query: 247 LDEIDSGLD-------VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP--TFIHIM 297
            DE  S LD       ++ L+D+ + +   LT    +++ITH    +E +K     + ++
Sbjct: 165 CDEATSALDPETTQSILELLKDINRELG--LT----IVLITHE---MEVVKRICDRVAVL 215

Query: 298 EDGRIIKTGDAS 309
           + GR+++ G  S
Sbjct: 216 DQGRLVEEGTVS 227

Length = 339

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF 140
           E+LK ++  + EGEV  I+G++G+GKS L  VL G   YE T G +++
Sbjct: 14  EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 50/218 (22%), Positives = 88/218 (40%), Gaps = 13/218 (5%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPE 151
           I+ GV++    G +  ++G NGSGKSTL ++L G   PD     G+V   G +L  +   
Sbjct: 16  IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD----AGTVDLAGVDLHGLSRR 71

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
            R+     +   S   +P +   D + +     R                    L R  +
Sbjct: 72  ARARRVALVEQDSDTAVP-LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA---LARTEL 127

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
            +   +R+++   SGGER+R  + +       L +LDE  + LDV A  +    V  L  
Sbjct: 128 -SHLADRDMST-LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185

Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
              +++   H   L        + +++ GR++  G   
Sbjct: 186 TGVTVVAALHDLNLAASYCDHVV-VLDGGRVVAAGPPR 222

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 53/247 (21%)

Query: 89  ESKQEILK---------GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG-HPDYEVTEGSV 138
           ++++EIL            +L + EGE+  +MG +GSGKSTL + + G +P   V+ GSV
Sbjct: 25  KTREEILDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNP---VSRGSV 81

Query: 139 VFK-GENLLEM----EPEERSL--AGLFMSFQSPVEIPGVN---NIDF-LHMAYNA---R 184
           + K G+  +++        R L    + M FQ    +P      N+ F L M       R
Sbjct: 82  LVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAER 141

Query: 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
           R+++ +              +LE + +   + +R   E  SGG ++R  + +     A +
Sbjct: 142 RKRVDE--------------QLELVGL-AQWADRKPGE-LSGGMQQRVGLARAFATEAPI 185

Query: 245 AILDEIDSGLDVDALRDVAKAVNGLL----TPKNSLLMITHYRRLLEFIK-PTFIHIMED 299
            ++DE  S LD   +R   +  + LL      K +++ ++H   L E +K    I IME 
Sbjct: 186 LLMDEPFSALD-PLIR--TQLQDELLELQSKLKKTIVFVSH--DLDEALKIGNRIAIMEG 240

Query: 300 GRIIKTG 306
           GRII+ G
Sbjct: 241 GRIIQHG 247

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 46/221 (20%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
            +L V+ L+       +  L+ V+L +  GE+  ++G +G GK+TL  ++ G      + 
Sbjct: 2   CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SR 59

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
           GS+   G   +E    ER +      FQ+   +P +N ID  ++A+  + R +       
Sbjct: 60  GSIQLNGRR-IEGPGAERGVV-----FQNEALLPWLNVID--NVAFGLQLRGI------- 104

Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGF--------SGGERKRNEILQLAVLGADLAIL 247
                    K +R  +    L     EG         SGG R+R  I +   +   L +L
Sbjct: 105 --------EKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLL 156

Query: 248 DEIDSGLDV-------DALRDVAKAVNGLLTPKNSLLMITH 281
           DE    LD        + L D+ +           +L+ITH
Sbjct: 157 DEPFGALDALTREQMQELLLDLWQETG------KQVLLITH 191

Length = 259

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 58/224 (25%), Positives = 111/224 (49%), Gaps = 23/224 (10%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG----HPDYEVTEGSVVFKGENLLEM 148
           E+L GVNL + +  + A+MG +GSGKSTL +V       +P+  V  G V   G+++ +M
Sbjct: 17  EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV-SGEVYLDGQDIFKM 75

Query: 149 EPEE--RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
           +  E  R +    M FQ P  IP ++   F ++A   +  +L + +    E    +   L
Sbjct: 76  DVIELRRRVQ---MVFQIPNPIPNLS--IFENVALGLKLNRLVKSK---KELQERVRWAL 127

Query: 207 ERLSMKTDFLNR-NVNEG-FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264
           E+  +  +  +R +   G  SGG+++R  I +      ++ + DE  + LD +   + AK
Sbjct: 128 EKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPE---NTAK 184

Query: 265 AVNGLLTPKN--SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             +  L  K   +++++TH+ +    I   ++  +  G+I++ G
Sbjct: 185 IESLFLELKKDMTIVLVTHFPQQAARIS-DYVAFLYKGQIVEWG 227

Length = 250

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 16/215 (7%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME--PEE 152
           L+ +NL++ +GE   I+GKNGSGKSTL+  L G       +G V+  G +  +       
Sbjct: 18  LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL--LRPQKGKVLVSGIDTGDFSKLQGI 75

Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R L G+   FQ+P E   V       +A+      L   EI      A     LE+   +
Sbjct: 76  RKLVGIV--FQNP-ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR 132

Query: 213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272
           +        +  SGG+ +   +  +  +  +  I DE+ S LD D+   V + +  L   
Sbjct: 133 SP-------KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK 185

Query: 273 KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
             +++ ITH   L E      I +M+ G+I+  G+
Sbjct: 186 GKTIVYITH--NLEELHDADRIIVMDRGKIVLEGE 218

Length = 274

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 19/223 (8%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLL 146
           +SK+  L  ++  +  G   A++G NGSGKST+SK++ G   PD +     +   G  L 
Sbjct: 17  DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD-DNPNSKITVDGITLT 75

Query: 147 EMEP-EERSLAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYP 204
                + R   G+   FQ+P  +  G    D   +A+    R + +PE+  I     +  
Sbjct: 76  AKTVWDIREKVGIV--FQNPDNQFVGATVGD--DVAFGLENRAVPRPEMIKI-----VRD 126

Query: 205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264
            L  + M  D+++       SGG+++R  I  +  +   + ILDE  S LD      + K
Sbjct: 127 VLADVGM-LDYIDSE-PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184

Query: 265 AVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            +  L    N +++ ITH   + E      + +++DG+++  G
Sbjct: 185 LIRKLKKKNNLTVISITH--DIDEANMADQVLVLDDGKLLAQG 225

Length = 282

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 39/230 (16%)

Query: 97  GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK-GENLLEME---PEE 152
            V+L V EGE+  I+G +G+GK+TLSK++ G    E T G V  + G+  ++M    P+ 
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG--VLEPTSGEVNVRVGDEWVDMTKPGPDG 359

Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYN--ARRRKLGQ--PEIG---PIEF---YAYL 202
           R  A  ++                LH  Y+    R  L      IG   P E     A +
Sbjct: 360 RGRAKRYIG--------------ILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVI 405

Query: 203 YPKLERLSMK--TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
             K+     +   + L++  +E  S GER R  + Q+ +    + ILDE    +D     
Sbjct: 406 TLKMVGFDEEKAEEILDKYPDE-LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKV 464

Query: 261 DVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTF--IHIMEDGRIIKTGD 307
           DV  ++       + + ++++H    ++F+        +M DG+I+K GD
Sbjct: 465 DVTHSILKAREEMEQTFIIVSHD---MDFVLDVCDRAALMRDGKIVKIGD 511

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 27/204 (13%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
           +L+V  L+ V    KQ  LK +NL +N GE  AI+G +G+GKSTL + +      E + G
Sbjct: 1   MLEVENLSKVYPNGKQ-ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL--VEPSSG 57

Query: 137 SVVFKGENLLEMEPEE-RSL-AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG-QPEI 193
           S++ +G ++ ++  ++ R L   + M FQ        N I+ L +  N    +LG +P  
Sbjct: 58  SILLEGTDITKLRGKKLRKLRRRIGMIFQH------YNLIERLTVLENVLHGRLGYKPTW 111

Query: 194 GPI------EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAIL 247
             +      E        LER+ +  D   +  ++  SGG+++R  I +      DL + 
Sbjct: 112 RSLLGRFSEEDKERALSALERVGLA-DKAYQRADQ-LSGGQQQRVAIARALAQQPDLILA 169

Query: 248 DEIDSGLD-------VDALRDVAK 264
           DE  + LD       +D L+ + K
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINK 193

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
           I K +NL ++EGE    +G +G GKSTL +++ G  D  +T G +    + + ++ P ER
Sbjct: 18  ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAER 75

Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
              G+ M FQS    P ++  +  +M++  +     + EI           +L  L    
Sbjct: 76  ---GVGMVFQSYALYPHLSVAE--NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL---- 126

Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
             L+R      SGG+R+R  I +  V    + +LDE  S LD  ALR
Sbjct: 127 --LDRKPKA-LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALR 169

Length = 369

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 44/173 (25%)

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL-LEMEPEERSLAGLFM 160
           + +GEV  I+G NG GK+T  K+L G    +  EGS     E+L +  +P+      +  
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAG--VIKPDEGSE----EDLKVSYKPQY-----ISP 412

Query: 161 SFQSPVEIPGVNNIDFLHMAYNARRRKLG----QPEIGPIEFYAYLYPKLERLSMKTDFL 216
            +   VE       D L    +A R   G    + EI            ++ L+++ D L
Sbjct: 413 DYDGTVE-------DLL---RSAIRSAFGSSYFKTEI------------VKPLNLE-DLL 449

Query: 217 NRNVNEGFSGGERKRNEILQLAVLG--ADLAILDEIDSGLDVDALRDVAKAVN 267
            R V+E  SGGE +R  I   A L   ADL +LDE  + LDV+    VAK + 
Sbjct: 450 ERPVDE-LSGGELQRVAI--AAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499

Length = 591

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL--VGHPDY 131
           ++P+LQV+ L+  +  +K++ L  V+L     E+ A++G +GSGKSTL + +  +   + 
Sbjct: 2   TEPILQVSDLS--VYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNP 59

Query: 132 EVT-EGSVVFKGENLLEMEPEERSL-AGLFMSFQSPVEIP 169
           EVT  GS+V+ G N+     +   L   + M FQ P   P
Sbjct: 60  EVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP 99

Length = 252

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 35/227 (15%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEME--- 149
           L  ++L +  GE+ A++G +G+GKSTL +++ G   PD     G +   G  L ++    
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD----AGRIRLNGRVLFDVSNLA 73

Query: 150 PEERSLAGLFMSFQSPVEIPGVN---NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
             +R +  +   FQ     P +    NI     A+  + RK  +P    I        ++
Sbjct: 74  VRDRKVGFV---FQHYALFPHMTVADNI-----AFGLKVRKE-RPSEAEIR------ARV 118

Query: 207 ERL--SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264
           E L   ++ + L        SGG+R+R  + +   +   + +LDE    LD    +++ +
Sbjct: 119 EELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178

Query: 265 AVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHI--MEDGRIIKTGDA 308
            +  L      + + +TH     E        +  +  GRI + G  
Sbjct: 179 WLRKLHDRLGVTTVFVTHD---QEEALELADRVVVLNQGRIEQVGPP 222

Length = 345

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 70/279 (25%), Positives = 128/279 (45%), Gaps = 53/279 (18%)

Query: 52  VTAALSAV---DSPLKSSSDGQDE--KSQPL-LQVTGLTAVIAESKQEILKGVNLLVNEG 105
           V AA S V   ++PL     G+ E   + P+ ++   L  +  + K  +   +N  +  G
Sbjct: 318 VGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKT-LAGPLNFTLPAG 376

Query: 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RSLAGLFMSFQ 163
           +  A++G +G+GK++L   L+G   Y+   GS+   G  L E++PE   + L+ +    Q
Sbjct: 377 QRIALVGPSGAGKTSLLNALLGFLPYQ---GSLKINGIELRELDPESWRKHLSWVG---Q 430

Query: 164 SPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERLSMKTDFL 216
           +P    G   +N+             LG P+    +       A++    E L +    L
Sbjct: 431 NPQLPHGTLRDNV------------LLGNPDASDEQLQQALENAWV---SEFLPLLPQGL 475

Query: 217 NRNVNE---GFSGGERKRNEILQLAV---LG--ADLAILDEIDSGLDVDALRDVAKAVNG 268
           +  + +   G S G+ +R     LA+   L     L +LDE  + LD  + + V +A+N 
Sbjct: 476 DTPIGDQAAGLSVGQAQR-----LALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530

Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
               + + LM+TH  +L +  +   I +M+DG+I++ GD
Sbjct: 531 ASRRQ-TTLMVTH--QLEDLAQWDQIWVMQDGQIVQQGD 566

Length = 588

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           K +++KG++L V +GE   ++G +G GKSTL +++ G     +T G +   G  + E+EP
Sbjct: 16  KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE--RITSGEIWIGGRVVNELEP 73

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHM------AYNARRRKLGQPEI 193
            +R +A   M FQ+    P        HM      AY  + R + + EI
Sbjct: 74  ADRDIA---MVFQNYALYP--------HMSVRENMAYGLKIRGMPKAEI 111

Length = 356

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 17/175 (9%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTL----SKVLVGHPDYEVTEGSVVFKGENL 145
               ++KGV+L + +  V A+MG +G GKSTL    +++L  + +  V EG V   G N+
Sbjct: 15  GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV-EGEVRLFGRNI 73

Query: 146 L--EMEP-EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYL 202
              +++P E R   G  M FQ P   P +   D + +          + E+     +A  
Sbjct: 74  YSPDVDPIEVRREVG--MVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA-- 129

Query: 203 YPKLERLSMKTDFLNR--NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
              L++ ++  +  +R  +     SGG+R+R  I +   +   + ++DE  + +D
Sbjct: 130 ---LKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANID 181

Length = 253

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 49.0 bits (118), Expect = 6e-07
 Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 53/223 (23%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
            LK +NL V +GE+ AI+G  GSGKS+L   L+G  + E   GSV   G           
Sbjct: 20  TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG--ELEKLSGSVSVPG----------- 66

Query: 154 SLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAY------LYPK 205
           S+A  ++S Q P    G    NI F    ++  R             Y        L P 
Sbjct: 67  SIA--YVS-QEPWIQNGTIRENILF-GKPFDEER-------------YEKVIKACALEPD 109

Query: 206 LERLSM--KTDFLNRNVNEGFSGGERKRNEILQLA--VLG-ADLAILDEIDSGLDVDALR 260
           LE L     T+   + +N   SGG+++R   + LA  V   AD+ +LD+  S +D    R
Sbjct: 110 LEILPDGDLTEIGEKGIN--LSGGQKQR---ISLARAVYSDADIYLLDDPLSAVDAHVGR 164

Query: 261 DVA-KAVNGLLTPKNSLLMITHYRRLLEFIKPT-FIHIMEDGR 301
            +    + GLL    + +++TH    L+ +     I ++++GR
Sbjct: 165 HIFENCILGLLLNNKTRILVTH---QLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 49/260 (18%)

Query: 72  EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LVGHP 129
           + ++  L+V  L     E   E+LKGV+L  N G+V +I+G +GSGKST  +    +  P
Sbjct: 1   DAAENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP 58

Query: 130 DYEVTEGSVVFKGENLLEMEPE-------------ERSLAGLFMSFQSPVEIPGVNNIDF 176
               + GS+   GE  + ++ +             +R    L M FQ         N+ +
Sbjct: 59  ----SAGSIRVNGEE-IRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH-------FNL-W 105

Query: 177 LHMA-----YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR-NVNEGF-SGGER 229
            HM        A    LG  +   IE       + E+   K     + +      SGG++
Sbjct: 106 SHMTVLENVIEAPVHVLGVSKAEAIE-------RAEKYLAKVGIAEKADAYPAHLSGGQQ 158

Query: 230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI 289
           +R  I +   +  ++ + DE  S LD + + +V K +  L     +++++TH    + F 
Sbjct: 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE---MGFA 215

Query: 290 KPTFIHIM--EDGRIIKTGD 307
           +    H++    G+I + G 
Sbjct: 216 RDVSSHVIFLHQGKIEEEGP 235

Length = 256

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.8 bits (116), Expect = 9e-07
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 30/205 (14%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH----PDYEVTEGSVVFKGENLL 146
           K E LKG++L  N+ E+ A++G +G GKST  + L       P   +T G+V  +G+N+ 
Sbjct: 17  KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT-GNVSLRGQNIY 75

Query: 147 EMEPEERSL-AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
               +   L   + M FQ P   P      + ++ Y  R        +  ++  A L   
Sbjct: 76  APNEDVVQLRKQVGMVFQQPNPFPFSI---YENVIYGLR--------LAGVKDKAVLDEA 124

Query: 206 LERLSMKTDFLNRNVNE-------GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
           +E  S+K   +   V +         SGG+++R  I ++  +  D+ +LDE  S LD  +
Sbjct: 125 VET-SLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPIS 183

Query: 259 LRDVAKAVNGLLTPKN--SLLMITH 281
                +  N LL  ++  +++++TH
Sbjct: 184 ---STQIENMLLELRDQYTIILVTH 205

Length = 252

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147
           K + L  V+L +N+GE+  ++G NG+GK+TL   L G P    T G +VF G+++ +
Sbjct: 17  KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP--RATSGRIVFDGKDITD 71

Length = 237

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 23/222 (10%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
             ILKG++L +  G+  A++G +G GKST+  +L     Y+ T G ++  G ++ ++   
Sbjct: 16  VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF--YDPTSGEILLDGVDIRDLNLR 73

Query: 152 E-RSLAGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
             RS  GL +S Q PV   G    NI      Y          E+      A ++  +  
Sbjct: 74  WLRSQIGL-VS-QEPVLFDGTIAENI-----RYGKPDAT--DEEVEEAAKKANIHDFIMS 124

Query: 209 LSMKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
           L    D  +  V E     SGG+++R  I +  +    + +LDE  S LD ++ + V +A
Sbjct: 125 L---PDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA 181

Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           ++  +  + + ++I H  RL        I ++++G++++ G 
Sbjct: 182 LDRAMKGRTT-IVIAH--RLSTIRNADLIAVLQNGQVVEQGT 220

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 45/229 (19%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL--LEMEPEE 152
           ++ V+     G+  AI+G  G+GKSTL  +L     ++   G ++  G ++  +      
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTVTRASLR 408

Query: 153 RSLAGLF---MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
           R++A +F     F   +E    +NI            ++G+P+    E    +    ER 
Sbjct: 409 RNIAVVFQDAGLFNRSIE----DNI------------RVGRPDATDEE----MRAAAER- 447

Query: 210 SMKTDFLNRNVNEGF-----------SGGERKRNEILQLAVL-GADLAILDEIDSGLDVD 257
           +   DF+ R  + G+           SGGER+R  I + A+L    + ILDE  S LDV+
Sbjct: 448 AQAHDFIERKPD-GYDTVVGERGRQLSGGERQRLAIAR-ALLKDPPILILDEATSALDVE 505

Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
               V  A++ L+  + + + I H  RL        I + ++GR++++G
Sbjct: 506 TEAKVKAALDELMKGRTTFI-IAH--RLSTVRNADRILVFDNGRVVESG 551

Length = 588

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 29/227 (12%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
             LKG+N+ + +GEV AI+G NG+GKSTL + L G    + + G ++F G      +P +
Sbjct: 20  HALKGININIKKGEVTAILGGNGAGKSTLFQNLNG--ILKPSSGRILFDG------KPID 71

Query: 153 RSLAGLF-------MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
            S  GL        M FQ P       ++ +  +++ A   KL + E+           +
Sbjct: 72  YSRKGLMKLRESVGMVFQDPDNQLFSASV-YQDVSFGAVNLKLPEDEV---------RKR 121

Query: 206 LERLSMKTDF--LNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263
           ++    +T    L        S G++KR  I  + V+   + +LDE  +GLD   + ++ 
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181

Query: 264 KAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
           K +  +      ++++ TH   ++         +M++GR+I  G+  
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVF-VMKEGRVILQGNPK 227

Length = 283

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 56/262 (21%), Positives = 103/262 (39%), Gaps = 54/262 (20%)

Query: 77  LLQVTGLTAVIAESKQEILKGVN---LLVNEGEVHAIMGKNGSGKSTLSKVLVGH----- 128
           +L+V  L  V  E ++  L  +N       + +++ I+G +GSGKSTL    V H     
Sbjct: 21  ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTL----VTHFNGLI 76

Query: 129 -PDY-------------EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP--------V 166
              Y             +     +       ++   E R      M FQ P        +
Sbjct: 77  KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS--MVFQFPEYQLFKDTI 134

Query: 167 EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG 226
           E     +I F  +A       LG  +    +   +    L ++ +   +L R+     SG
Sbjct: 135 E----KDIMFGPVA-------LGVKKSEAKKLAKFY---LNKMGLDDSYLERSPFG-LSG 179

Query: 227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH-YRRL 285
           G+++R  I  +  +  ++ I DE  +GLD     ++ + +        ++ +ITH    +
Sbjct: 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV 239

Query: 286 LEFIKPTFIHIMEDGRIIKTGD 307
           LE      + +M+ G+I+KTG 
Sbjct: 240 LEV--ADEVIVMDKGKILKTGT 259

Length = 320

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 34/208 (16%)

Query: 104 EGEVHAIMGKNGSGKSTLSKVLVGH-----------PDY-EVTEGSVVFKGENLLEMEPE 151
           EG+V  ++G NG GKST  K+L G            PD+ E+ +    F+G  L      
Sbjct: 25  EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILD---EFRGSELQNYF-- 79

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL--GQPEIGPIEFYAYLYPKLERL 209
            + L G       P        +D +  A   +  +L   + E G ++        +++L
Sbjct: 80  TKLLEGDVKVIVKP------QYVDLIPKAVKGKVGELLKKKDERGKLDEL------VDQL 127

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
            ++   L+RN+++  SGGE +R  I       AD    DE  S LD+    + A+ +  L
Sbjct: 128 ELR-HVLDRNIDQ-LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL 185

Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIM 297
               N +L++ H   +L+++   +IH +
Sbjct: 186 AEDDNYVLVVEHDLAVLDYLS-DYIHCL 212

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 22/226 (9%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL-E 147
           ES    L GV+  + +GE  +I+G+NGSGKST ++++ G   +E  EG V   GE L  E
Sbjct: 17  ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--FEEFEGKVKIDGELLTAE 74

Query: 148 MEPEERSLAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
                R   G  M FQ+P  +  G    D   +A+    + + + E         +  ++
Sbjct: 75  NVWNLRRKIG--MVFQNPDNQFVGATVED--DVAFGMENQGIPREE---------MIKRV 121

Query: 207 ERLSMKTDFLNRNVNEG--FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264
           +   +  + L+    E    SGG+++R  +  +  L  ++ ILDE  S LD    +++ +
Sbjct: 122 DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181

Query: 265 AVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
            ++ +      ++L ITH   L E      I +M+ G IIK    S
Sbjct: 182 VIHEIKEKYQLTVLSITH--DLDEAASSDRILVMKAGEIIKEAAPS 225

Length = 277

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 31/175 (17%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL--VGHPDYEVTEGSVVFKGENLLEMEPEE 152
           L GV+  +  G+  A++G++G GKSTL+++L  +  P    T G + ++G++LL+ +PE 
Sbjct: 31  LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP----TGGELYYQGQDLLKADPEA 86

Query: 153 RSLA--GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK----- 205
           + L    + + FQ+P            + + N  R+K+GQ    P+     L        
Sbjct: 87  QKLLRQKIQIVFQNP------------YGSLNP-RKKVGQILEEPLLINTSLSAAERREK 133

Query: 206 ----LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
               + ++ ++ +  +R  +  FSGG+R+R  I +  +L  D+ + DE  S LDV
Sbjct: 134 ALAMMAKVGLRPEHYDRYPHM-FSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187

Length = 327

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDY--EVTEGSVVFKGENLLEM-EPEERSLAG- 157
           V +GEV  I+G++GSGKS  S  ++G  DY   V    + F G++L  + E E R+L G 
Sbjct: 30  VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGA 89

Query: 158 -LFMSFQSP 165
            + M FQ P
Sbjct: 90  EVAMIFQDP 98

Length = 326

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 14/193 (7%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL---VGHPDYEVTEGSVVFKGENLLEME-P 150
           LK +NL ++E EV AI+G +G GKST  K L   V       T G ++++ +N+ +    
Sbjct: 40  LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99

Query: 151 EERSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
            E     + M FQ P   P    +N+ +    +  + +K     +      A ++ +L+ 
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK- 158

Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
                D L+ N   G SGG+++R  I +   +  D+ ++DE  S LD  +   V + V  
Sbjct: 159 -----DRLHDNA-YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212

Query: 269 LLTPKNSLLMITH 281
            L    S++++TH
Sbjct: 213 -LKKDYSIIIVTH 224

Length = 271

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 25/216 (11%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE--NLLEMEPE 151
           +L+ V+  ++ GEV A++G +GSGKST+  +L     Y+   G V+  G+  +  E +  
Sbjct: 29  VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF--YQPQGGQVLLDGKPISQYEHKYL 86

Query: 152 ERSLAGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
              ++   +  Q PV       +NI     AY      L       ++  A        +
Sbjct: 87  HSKVS---LVGQEPVLFARSLQDNI-----AYG-----LQSCSFECVKEAAQKAHAHSFI 133

Query: 210 SMKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266
           S      +  V E     SGG+++R  I +  +    + ILDE  S LD ++ + V +A+
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193

Query: 267 NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302
                 + ++L+I H    +E  +   I +++ GRI
Sbjct: 194 YDWPE-RRTVLVIAHRLSTVE--RADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 38/169 (22%)

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEERSLAGLF 159
           + EGEV  I+G NG GK+T +K+L G   PD    EG V  + +  +  +P+      + 
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD----EGEVDPELK--ISYKPQY-----IK 410

Query: 160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRN 219
             +   VE       D L    +       + EI            ++ L ++   L++N
Sbjct: 411 PDYDGTVE-------DLLRSITDDLGSSYYKSEI------------IKPLQLE-RLLDKN 450

Query: 220 VNEGFSGGERKRNEILQLAVLG--ADLAILDEIDSGLDVDALRDVAKAV 266
           V +  SGGE +R  I   A L   ADL +LDE  + LDV+    VAKA+
Sbjct: 451 VKD-LSGGELQRVAI--AACLSRDADLYLLDEPSAHLDVEQRLAVAKAI 496

Length = 590

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 23/220 (10%)

Query: 98  VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV------VFKGENLLEMEPE 151
           ++L V +G   A++G  GSGKSTL + L G    + TEG V      V       E++P 
Sbjct: 25  IDLEVKKGSYTALIGHTGSGKSTLLQHLNGL--LQPTEGKVTVGDIVVSSTSKQKEIKPV 82

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
            + +    + FQ P E           +A+  +   + + +   I        KLE + +
Sbjct: 83  RKKVG---VVFQFP-ESQLFEETVLKDVAFGPQNFGIPKEKAEKIA-----AEKLEMVGL 133

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
             +F  ++  E  SGG+ +R  I  +  +  ++ +LDE  +GLD  A  ++ +    +  
Sbjct: 134 ADEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192

Query: 272 PKNSLLMITHYRRLLEFIK--PTFIHIMEDGRIIKTGDAS 309
              +++++TH   L++ +     +++++E G II  G  S
Sbjct: 193 SGQTVVLVTH---LMDDVADYADYVYLLEKGHIISCGTPS 229

Length = 288

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 42/234 (17%)

Query: 88  AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147
           A S Q +   V+     G+  AI+G  G+GK+TL  +L     Y+ T G ++  G ++  
Sbjct: 345 ANSSQGV-FDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINT 401

Query: 148 MEPE--ERSLAGLFMS---FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYL 202
           +  E   +S+A +F     F   +      NI            +LG+      E Y   
Sbjct: 402 VTRESLRKSIATVFQDAGLFNRSIR----ENI------------RLGREGATDEEVYE-- 443

Query: 203 YPKLERLSMKTDFLNRNVN----------EGFSGGERKRNEILQLAVLGADLAILDEIDS 252
                + +   DF+ +  N             SGGER+R  I +  +  A + +LDE  S
Sbjct: 444 ---AAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATS 500

Query: 253 GLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            LDV+    V  A++ L   + + + I H  RL        +  ++ GR+I+ G
Sbjct: 501 ALDVETEARVKNAIDALRKNRTTFI-IAH--RLSTVRNADLVLFLDQGRLIEKG 551

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 32/173 (18%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-- 152
           +K  +L + EGE+  IMG +GSGKST+ ++L  +   E T G V+  G ++ ++   E  
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGVDIAKISDAELR 101

Query: 153 ----RSLAGLFMSFQSPVEIPGVNNIDF----LHMAYNARRRKL--GQPEIGPIEFYAYL 202
               + +A +F SF     +  ++N  F      +    RR K      ++G +E YA+ 
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVG-LENYAHS 160

Query: 203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
           YP                 +  SGG R+R  + +   +  D+ ++DE  S LD
Sbjct: 161 YP-----------------DELSGGMRQRVGLARALAINPDILLMDEAFSALD 196

Length = 400

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 56/236 (23%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEME 149
           + ++ G++  V  GE   ++G NG+GK+T  ++L+G  HPD     GS+   GE +    
Sbjct: 20  KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD----AGSISLCGEPVPSRA 75

Query: 150 PEERSLAGLFMSFQSPVEIPGVNNID---------------FLHMAYNARRRKLGQPEIG 194
              R   G+         +P  +N+D               F   A  AR      P + 
Sbjct: 76  RHARQRVGV---------VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL---VPPL- 122

Query: 195 PIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254
            +EF         +L  K D     V E  SGG ++R  + +  V   D+ +LDE  +GL
Sbjct: 123 -LEF--------AKLENKAD---AKVGE-LSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169

Query: 255 DVDALRDVAKAVNGLLTPKNSLLMITHY----RRLLEFIKPTFIHIMEDGRIIKTG 306
           D  A   + + +  LL    ++L+ TH+     RL +      + ++E+GR I  G
Sbjct: 170 DPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCD-----RLCVIEEGRKIAEG 220

Length = 306

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 6/67 (8%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEE 152
           L  V+L +  GE+ A++G +GSGK+TL +++ G   PD     G+++F GE+  ++  +E
Sbjct: 18  LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD----SGTILFGGEDATDVPVQE 73

Query: 153 RSLAGLF 159
           R++  +F
Sbjct: 74  RNVGFVF 80

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 84  TAVIAES--------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
              I ES        ++ +L+ +NL +  G+V A++G++G+GK+TL ++++G       E
Sbjct: 380 FQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEE 439

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
                 G+  +        + G +       E   V  ++ L       R K G      
Sbjct: 440 KYRPDSGKVEVPKNTVSALIPGEYEP-----EFGEVTILEHL-------RSKTGDLNAA- 486

Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
           +E        L R  +    L R      S G+++R ++ +L     ++ ++DE  + LD
Sbjct: 487 VEI-------LNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539

Query: 256 VDALRDVAKAVNGLLTPKNSLLM-ITHYRRLLEFIKP 291
                 VA+ ++ L       L+ +TH   +   ++P
Sbjct: 540 ELTAVRVARKISELAREAGITLIVVTHRPEVGNALRP 576

Length = 593

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF 159
           L  ++GE+  ++G NG+GK+TL + ++G       +G+V   G +        R +  + 
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGL--IPPAKGTVKVAGAS---PGKGWRHIGYVP 55

Query: 160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRN 219
              +   + P    I   H   + R   +G      +  +A +   L R+ + T+  +R 
Sbjct: 56  QRHEFAWDFP----ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL-TELADRP 110

Query: 220 VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI 279
           V E  SGG+R+R  + +       + +LDE  +GLD+     + +    L     ++LM 
Sbjct: 111 VGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169

Query: 280 TH 281
           TH
Sbjct: 170 TH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 36/225 (16%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           +LK ++  +  GE   I+G+ GSGKS+L   L      E++ GS++  G ++ ++   + 
Sbjct: 19  VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL--VELSSGSILIDGVDISKIGLHDL 76

Query: 153 RSLAGLFMSF--QSPVEIPGV--NNIDFLHMAYNARRRK-LGQPEIGPIEFYAYLYPKLE 207
           RS     +S   Q PV   G   +N+D      +    + L +           L   +E
Sbjct: 77  RSR----ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALER---------VGLKEFVE 123

Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG------ADLAILDEIDSGLDVDALRD 261
            L    D +     E  S G+R      QL  L       + + +LDE  + +D +    
Sbjct: 124 SLPGGLDTVVEEGGENLSVGQR------QLLCLARALLRKSKILVLDEATASVDPETDAL 177

Query: 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           + K +        ++L I H  RL   I    I +++ GR+++  
Sbjct: 178 IQKTIREAF-KDCTVLTIAH--RLDTIIDSDRILVLDKGRVVEFD 219

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 28/207 (13%)

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVL-------VGHPDYEVTEGSVV--FKGENLLEMEPEE 152
              G+V  I+G NG GKST  K+L       +G  +   +   V+  F+G  L       
Sbjct: 97  PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY---- 152

Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL--GQPEIGPIEFYAYLYPKLERLS 210
                L+      V  P    +D +      +  +L     E G  +         ERL 
Sbjct: 153 --FKKLYEGELRAVHKP--QYVDLIPKVVKGKVGELLKKVDERGKFDEVV------ERLG 202

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +  + L+R+V+E  SGGE +R  I    +  AD+   DE  S LD+    + A+ +  L 
Sbjct: 203 L-ENVLDRDVSE-LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA 260

Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIM 297
                ++++ H   +L+++   F+HI+
Sbjct: 261 EDGKYVIVVEHDLAVLDYLS-DFVHIL 286

Length = 591

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 50/260 (19%)

Query: 74  SQPLLQVTGLTA-------VIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV 124
            +P+LQV  L         ++    +E+  ++ V+  +  GE  +++G++GSGKST  + 
Sbjct: 310 GEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRA 369

Query: 125 LVGHPDYEVTEGSVVFKGENL-----LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHM 179
           L+     E   G ++F G+ +      +++   R +  +F   Q P              
Sbjct: 370 LLRL--VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIF---QDP-------------Y 411

Query: 180 AYNARRRKLGQPEIGPIEFYAYLYPK---------LERLSMKTDFLNRNVNEGFSGGERK 230
           A    R+ +G   + P+  +  L  K         LER+ +  +   R  +E FSGG+R+
Sbjct: 412 ASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE-FSGGQRQ 470

Query: 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL----LMITHYRRLL 286
           R  I +   L   + I DE  S LDV ++R   + +N LL  +       L I+H   ++
Sbjct: 471 RICIARALALNPKVIIADEAVSALDV-SIR--GQIINLLLDLQRDFGIAYLFISHDMAVV 527

Query: 287 EFIKPTFIHIMEDGRIIKTG 306
           E I    + +M  G+I++ G
Sbjct: 528 ERISHR-VAVMYLGQIVEIG 546

Length = 623

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           E + E+LKG++L +  GE+ AI+G +GSGKSTL  +L G  D + T G+    G+++  +
Sbjct: 18  EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLD-KPTSGTYRVAGQDVATL 75

Query: 149 EPEERSLAGL 158
           + +   LA L
Sbjct: 76  DADA--LAQL 83

Length = 648

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 19/234 (8%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV-VFKGENLLEMEPE 151
           + LKG++L + EG   A++G NG+GKSTL   L G   Y    G V V   E   E E  
Sbjct: 19  KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI--YLPQRGRVKVMGREVNAENEKW 76

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
            RS  GL   FQ P +    + + +  +A+      L + E+      A     L+ + M
Sbjct: 77  VRSKVGLV--FQDPDDQVFSSTV-WDDVAFGPVNMGLDKDEVERRVEEA-----LKAVRM 128

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
             DF ++      S G++KR  I  +  +  D+ +LDE  + LD      + + ++ L  
Sbjct: 129 W-DFRDKPPYH-LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN 186

Query: 272 PKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTGDASIAT---VLEEGGYKA 321
              ++++ TH   L  E+     + ++++GR++  GD S+ T   ++E+ G + 
Sbjct: 187 QGKTVIVATHDVDLAAEW--ADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRL 238

Length = 274

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 7/97 (7%)

Query: 76  PLLQVTGLTA--VIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDY 131
           PLL +  LT     ++   + +  V++ + EGE+  ++G++GSGKS ++K + G    ++
Sbjct: 2   PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNW 61

Query: 132 EVTEGSVVFKGENLLEMEPEER-SLAG--LFMSFQSP 165
            VT   + F   +LL + P ER  L G  + M FQ P
Sbjct: 62  RVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98

Length = 330

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 45.5 bits (109), Expect = 6e-06
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 20/99 (20%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
           P+L+V GL+   A      ++ V+  V  GE+  I G  G+G++ L++ L G        
Sbjct: 3   PVLEVRGLSVKGA------VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL--RPPAS 54

Query: 136 GSVVFKGENLLEME------------PEERSLAGLFMSF 162
           G +   G+ +                PE+R   GL +  
Sbjct: 55  GEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 36/253 (14%)

Query: 44   RHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQ---------PLLQVTGLTAVIAESKQEI 94
            +HH  L+R  A       P+    D   E+ Q          +L++  LT V + +    
Sbjct: 1897 QHHFFLSRWIA--EPAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGTSSPA 1954

Query: 95   LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
            +  + + V  GE   ++G NG+GK+T  K+L G  D  VT G     G+++L    +   
Sbjct: 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG--DTTVTSGDATVAGKSILTNISDVHQ 2012

Query: 155  LAGLFMSFQSPVEIPGVNNIDFL-----HMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
              G           P  + ID L     H+   AR R +   EI  +  ++    +   L
Sbjct: 2013 NMGY---------CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSI---QSLGL 2060

Query: 210  SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA-DLAILDEIDSGLDVDALRDVAKAVNG 268
            S+  D L       +SGG  KR     +A++G   L +LDE  +G+D  A R +   +  
Sbjct: 2061 SLYADRLAGT----YSGGN-KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115

Query: 269  LLTPKNSLLMITH 281
            ++    ++++ +H
Sbjct: 2116 IIREGRAVVLTSH 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 26/216 (12%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
            Q  + V  +T V   +    L+  +  V  G + A++G NGSGKSTL K L+G     +
Sbjct: 3   QQAGIVVNDVT-VTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--VRL 59

Query: 134 TEGSVVFKG--------ENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR 185
             G +   G        +NL+   P+   +   F      V + G     + HM +  RR
Sbjct: 60  ASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMG----RYGHMGW-LRR 114

Query: 186 RKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLA 245
            K    +I        +   L R+ M  +F +R + E  SGG++KR  + +       + 
Sbjct: 115 AKKRDRQI--------VTAALARVDM-VEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVI 164

Query: 246 ILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
           +LDE  +G+DV     +   +  L     ++L+ TH
Sbjct: 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200

Length = 272

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 85  AVIAES------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV 138
           A+  E+         + K +NLL+  GE  AI+G+NG GK+TL + LVG  + E   G+V
Sbjct: 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG--ELEPDSGTV 376

Length = 530

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.8 bits (108), Expect = 9e-06
 Identities = 48/225 (21%), Positives = 112/225 (49%), Gaps = 17/225 (7%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKV---LVGHPDYEV-TEGSVVFKGENLLE 147
           + ILK + + +    +  IMG +GSGKSTL KV   L+   D ++  +G V++ G+++ +
Sbjct: 23  KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82

Query: 148 MEP-EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
           ++  + R   G  M FQ P   P ++  D  ++AY  +   + +      E    +   L
Sbjct: 83  IDAIKLRKEVG--MVFQQPNPFPHLSIYD--NIAYPLKSHGIKEKR----EIKKIVEECL 134

Query: 207 ERLSMKTDFLNR--NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264
            ++ +  +  +R  +     SGG+++R  I +   L   + ++DE  S +D+   + + K
Sbjct: 135 RKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194

Query: 265 AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
            +   L  + ++++++H  + +  +   ++  + +G +++ G ++
Sbjct: 195 LITE-LKNEIAIVIVSHNPQQVARVA-DYVAFLYNGELVEWGSSN 237

Length = 257

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 225 SGGERKRNE---ILQLA-VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
           SGGE++ +    IL LA +    L ILDEID GLD    + +A+A+   L     +++IT
Sbjct: 79  SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVIT 138

Query: 281 HYRRLLEFIKPTFIHI 296
           H   L E      IHI
Sbjct: 139 HLPELAELAD-KLIHI 153

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 57/245 (23%), Positives = 116/245 (47%), Gaps = 25/245 (10%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTL----SKVLVGHPD 130
           +P++++   +A   E K   +K V + + + ++ AI+G +G GK+TL    +++    P 
Sbjct: 1   EPIIEIENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPG 58

Query: 131 YEVTEGSVVFKGENLLEME---PEERSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARR 185
           + V EG + FKG+++ + +    E R   G  M FQ P   P    +N+ F    +  + 
Sbjct: 59  FRV-EGKIYFKGQDIYDPQLDVTEYRKKVG--MVFQKPTPFPMSIYDNVAFGPRIHGVKS 115

Query: 186 RKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLA 245
           +      +      A L+ +++        LN+      SGG+++R  I +   +  ++ 
Sbjct: 116 KHKLDRIVEESLKKAALWDEVKSE------LNKPGTR-LSGGQQQRLCIARALAVEPEVI 168

Query: 246 ILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT-FIHIMEDGRIIK 304
           +LDE  S LD  A + + K +   L+   +++++TH   + + I+   +I  M  G +I+
Sbjct: 169 LLDEPTSALDPIATQRIEKLLEE-LSENYTIVIVTH--NIGQAIRIADYIAFMYRGELIE 225

Query: 305 TGDAS 309
            G   
Sbjct: 226 YGPTR 230

Length = 250

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 42/202 (20%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEP 150
             L+ ++L V EGE  A++G +G GKSTL +++ G   P    T G V+  GE       
Sbjct: 18  TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP----TSGEVLVDGE-----PV 68

Query: 151 EERSLAGLFMSFQSPVEIPGVN---NIDF-LHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
                   ++ FQ    +P +    N+   L +    +     + E         L  +L
Sbjct: 69  TGPGPDRGYV-FQQDALLPWLTVLDNVALGLELQGVPKAEARERAE-------ELL--EL 118

Query: 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV-------DAL 259
             LS    F N   ++  SGG R+R  + +   +  D+ +LDE  S LD        + L
Sbjct: 119 VGLS---GFENAYPHQ-LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174

Query: 260 RDVAKAVNGLLTPKNSLLMITH 281
            D+            ++L++TH
Sbjct: 175 LDI------WRETGKTVLLVTH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN 144
            IL  +NL + +G+++AI+G++GSGKSTL  ++     ++   G V   G+ 
Sbjct: 12  VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD--SGQVYLNGQE 61

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 27/192 (14%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPE 151
           +  G++  +  GE   + G NGSGK+TL ++L G   P      G V+  G  L      
Sbjct: 15  LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGGPLDFQRDS 70

Query: 152 ERSLAGLFMSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
                 L++     ++  +  + N+ F H A ++                  +   L R+
Sbjct: 71  IAR-GLLYLGHAPGIKTTLSVLENLRFWH-ADHSD---------------EQVEEALARV 113

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
            +   F +R V +  S G+++R  + +L + G  L ILDE  + LD   +   A+A+ G 
Sbjct: 114 GL-NGFEDRPVAQ-LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171

Query: 270 LTPKNSLLMITH 281
                 +++ TH
Sbjct: 172 CARGGMVVLTTH 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
             ++ +  VNL + EGE   ++G +GSGK+T  K++      E T G ++  GE++ +++
Sbjct: 12  GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--IEPTSGEILIDGEDISDLD 69

Query: 150 PEE 152
           P E
Sbjct: 70  PVE 72

Length = 309

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 57/195 (29%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
           +LK ++  +  G+   I G +G+GKS+L                  F            R
Sbjct: 16  LLKDLSFEIKPGDRLLITGPSGTGKSSL------------------F------------R 45

Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
           +LAGL+      + +P   ++ FL      +R  L     G +     +YP  + LS   
Sbjct: 46  ALAGLWPWGSGRIGMPEGEDLLFL-----PQRPYLPL---GTLR-EQLIYPWDDVLS--- 93

Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK 273
                       GGE++R    +L +       LDE  S LD ++   + + +  L    
Sbjct: 94  ------------GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI-- 139

Query: 274 NSLLMITHYRRLLEF 288
            +++ + H   L +F
Sbjct: 140 -TVISVGHRPSLWKF 153

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
               +LKG+   ++ GEV A++G +GSGKST++ +L     Y+ T G V+  G  L++ +
Sbjct: 492 PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPLVQYD 549

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 49/212 (23%), Positives = 96/212 (45%), Gaps = 18/212 (8%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME----P 150
           L G+N+ ++ GE   ++G +G+GKSTL K++    +   T G++   G+++ ++     P
Sbjct: 17  LDGINISISAGEFVFLVGPSGAGKSTLLKLIYK--EELPTSGTIRVNGQDVSDLRGRAIP 74

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
             R   G  + FQ    +P  N  + +  A       L    + P E    +   LE + 
Sbjct: 75  YLRRKIG--VVFQDFRLLPDRNVYENVAFA-------LEVTGVPPREIRKRVPAALELVG 125

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +     +R +    SGGE++R  I +  V    + I DE    LD D   ++   +  + 
Sbjct: 126 LSHK--HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183

Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302
               ++++ TH + L++  +   I + E G++
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIAL-ERGKL 214

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 32/162 (19%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-R 153
           +  +NL +  GE+  ++G NGSGKSTL+ +L G   Y+   G ++  G+ +   +PE+ R
Sbjct: 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL--YQPQSGEILLDGKPVTAEQPEDYR 396

Query: 154 SL-AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK-LERLSM 211
            L + +F  F             F  +        LG PE  P      L  K LERL M
Sbjct: 397 KLFSAVFTDFHL-----------FDQL--------LG-PEGKPAN--PALVEKWLERLKM 434

Query: 212 --KTDFL-NRNVNEGFSGGERKRNEILQLAVL-GADLAILDE 249
             K +    R  N   S G++KR  +L LA+    D+ +LDE
Sbjct: 435 AHKLELEDGRISNLKLSKGQKKRLALL-LALAEERDILLLDE 475

Length = 547

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 74/255 (29%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL--VGHPDYEVTEGSVVFKGENLLEM 148
           + E+LKGV+L  N G+V +I+G +GSGKST  + +  +  P    +EGS+V  G+ +  +
Sbjct: 17  EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP----SEGSIVVNGQTINLV 72

Query: 149 EPEERSL------------AGLFMSFQ----------------SPVEIPGVNNIDFLHMA 180
             ++  L              L M FQ                +P+++ G++  +     
Sbjct: 73  RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQE----- 127

Query: 181 YNARRR------KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI 234
             AR R      K+G  E    ++  +L                      SGG+++R  I
Sbjct: 128 --ARERAVKYLAKVGIDERAQGKYPVHL----------------------SGGQQQRVSI 163

Query: 235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI 294
            +   +  ++ + DE  S LD + + +V + +  L     +++++TH    + F +    
Sbjct: 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE---MGFARHVSS 220

Query: 295 HI--MEDGRIIKTGD 307
           H+  +  G+I + G 
Sbjct: 221 HVIFLHQGKIEEEGA 235

Length = 257

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
           KQ  +  ++L V +  V+ ++G NG+GKSTL K++ G      T G ++F G
Sbjct: 12  KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--LRPTSGEIIFDG 61

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 24/219 (10%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEE 152
           L  VNL V  G + A++G +GSGKSTL +++ G   PD     G +   G++   +   +
Sbjct: 16  LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD----SGRIRLNGQDATRVHARD 71

Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI-GPIEFYAYLYPKLERLSM 211
           R +  +F  +     +   +NI     A+    RK  + +I   +E       +L  L  
Sbjct: 72  RKIGFVFQHYALFKHLTVRDNI-----AFGLEIRKHPKAKIKARVE-------ELLELVQ 119

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
                +R  N+  SGG+R+R  + +   +   + +LDE    LD    +++   +  L  
Sbjct: 120 LEGLGDRYPNQ-LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178

Query: 272 P-KNSLLMITH-YRRLLEFIKPTFIHIMEDGRIIKTGDA 308
               + + +TH     +E      I +M +G+I + G  
Sbjct: 179 EVHVTTVFVTHDQEEAMEVADR--IVVMSNGKIEQIGSP 215

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 49/189 (25%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENL 145
           K   LK +NL + + +V A +G +G GKSTL +    +  YE+      EG ++  GEN+
Sbjct: 25  KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF--NRMYELYPEQRAEGEILLDGENI 82

Query: 146 LEMEPEERSL-AGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYL 202
           L  + +   L A + M FQ P   P    +NI     A+  R                 L
Sbjct: 83  LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI-----AFGVR-----------------L 120

Query: 203 YPKLERLSMK----------------TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAI 246
           + KL R  M                  D L+++     SGG+++R  I +   +  ++ +
Sbjct: 121 FEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGY-SLSGGQQQRLCIARGIAIRPEVLL 179

Query: 247 LDEIDSGLD 255
           LDE  S LD
Sbjct: 180 LDEPCSALD 188

Length = 260

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 39/193 (20%)

Query: 68  DGQDEKSQPLLQVTGLTAVIAESKQEI---LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV 124
           D    ++ P  +   L  V   + Q+    +  +NL +  GE+  ++G NGSGKSTL+ +
Sbjct: 310 DFPRPQAFPDWKTLELRNVRF-AYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAML 368

Query: 125 LVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR 184
           L G   Y+   G ++  G+ +   + E+     LF +  S   +            ++  
Sbjct: 369 LTGL--YQPQSGEILLDGKPVSAEQLEDYR--KLFSAVFSDYHL------------FDQL 412

Query: 185 RRKLGQPEIGPIEFYAYLYPKLERLSM--KTDFLNRN-VNEGFSGGERKRNEILQLAVLG 241
               G+     IE +      L+RL +  KT   +    N   S G++KR     LA+L 
Sbjct: 413 LGPEGKASPQLIEKW------LQRLELAHKTSLNDGRFSNLKLSTGQKKR-----LALLL 461

Query: 242 A-----DLAILDE 249
           A     D+ +LDE
Sbjct: 462 ALLEERDILVLDE 474

Length = 546

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 70/259 (27%), Positives = 104/259 (40%), Gaps = 62/259 (23%)

Query: 86  VIAESKQEILKGVNLL-------VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV 138
           +I  S  +I +GV +L       +N G+   ++GKNG GKSTL  +L    +     GS 
Sbjct: 1   MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN--EISADGGSY 58

Query: 139 VFKG-------------------ENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLH- 178
            F G                   E +++ + E R L           E    + I  +H 
Sbjct: 59  TFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEA---QLHDANERNDGHAIATIHG 115

Query: 179 -----MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE 233
                 A+  R R             A L   L  L    + L R V++ FSGG R R  
Sbjct: 116 KLDAIDAWTIRSRA------------ASL---LHGLGFSNEQLERPVSD-FSGGWRMRLN 159

Query: 234 ILQLAVLGADLAILDEIDSGLDVDA---LRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK 290
           + Q  +  +DL +LDE  + LD+DA   L    K+  G      +L++I+H R  L+ I 
Sbjct: 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG------TLILISHDRDFLDPIV 213

Query: 291 PTFIHIMEDGRIIKTGDAS 309
              IHI +      TG+ S
Sbjct: 214 DKIIHIEQQSLFEYTGNYS 232

Length = 638

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 16/85 (18%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL---VGHPDYEVTEGSVVFKGEN--- 144
           ++E LK +NL + + +V A++G +G GKSTL + L            EG V+F G++   
Sbjct: 13  EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72

Query: 145 ----LLEMEPEERSLAGLFMSFQSP 165
               ++E+    R   G  M FQ P
Sbjct: 73  KKIDVVEL----RRRVG--MVFQKP 91

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTL 121
           Q +L G++L V  GEV AI+G +GSGK+TL
Sbjct: 16  QTVLHGIDLEVKPGEVVAIIGPSGSGKTTL 45

Length = 250

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 49/244 (20%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKST----LSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           L  V++ +N+GE  AI+G+ GSGK+T    L+ +L+  PD     G++ +  ++      
Sbjct: 23  LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PD----TGTIEWIFKD-----E 71

Query: 151 EERSLAGLFMSFQSPVEI--PGVNNIDFLHMAYNARRRKLG---------------QPEI 193
           + +            + I       I  +       RR++G               + +I
Sbjct: 72  KNKKKTKEKEKVLEKLVIQKTRFKKIKKI----KEIRRRVGVVFQFAEYQLFEQTIEKDI 127

Query: 194 --GPIEF-----YAYLYPK--LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
             GP+        A       +E + +   +L R+  E  SGG+++R  +  +  +  D 
Sbjct: 128 IFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE-LSGGQKRRVALAGILAMEPDF 186

Query: 245 AILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH-YRRLLEFIKPTFIHIMEDGRII 303
            + DE  +GLD   ++++ +  + L     +++++TH    +LE+ K T     +DG+II
Sbjct: 187 LVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI--FFKDGKII 244

Query: 304 KTGD 307
           K GD
Sbjct: 245 KDGD 248

Length = 305

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 35/213 (16%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
            +L+   L  V     + +  G++  +  GE   + G NGSGK+TL +++ G        
Sbjct: 1   MMLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--LPPAA 56

Query: 136 GSVVFKGENLLEMEPEERS--LAGL-FM-SFQSPVEIPGVNNIDFLHMAYNARRRKLGQP 191
           G++   G ++ + +  E    L     M    +  E     N++F           LG  
Sbjct: 57  GTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE-----NLEFW-------AAFLGGE 104

Query: 192 EIGP---IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILD 248
           E+     +E    L P          +L        S G+++R  + +L V    + ILD
Sbjct: 105 ELDIAAALEAVG-LAPLAHL---PFGYL--------SAGQKRRVALARLLVSNRPIWILD 152

Query: 249 EIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
           E  + LD  A+   A+ +   L     ++  TH
Sbjct: 153 EPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185

Length = 207

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 23/233 (9%)

Query: 83  LTAVIAESKQEILKG------VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
           +  + A++  +  KG      V+L VN GE+  ++G NG+GK+T   ++VG    +   G
Sbjct: 1   MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AG 58

Query: 137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG--QPEIG 194
           +++   E++  +    R+  G+    Q       ++  D L MA    R  L   Q E  
Sbjct: 59  NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNL-MAVLQIRDDLSAEQREDR 117

Query: 195 PIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254
             E        +E   +  + L  ++ +  SGGER+R EI +         +LDE  +G+
Sbjct: 118 ANEL-------MEEFHI--EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGV 168

Query: 255 DVDALRDVAKAVNGLLTPKNSLLMITH-YRRLLEFIKPTFIHIMEDGRIIKTG 306
           D  ++ D+ + +  L      +L+  H  R  L   +  +  I+  G +I  G
Sbjct: 169 DPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAY--IVSQGHLIAHG 219

Length = 241

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 16/196 (8%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH----PDYEVTEGSVVFKGENLLEM 148
           E L G++L   E E+ A++G +G GKST  + L        + ++T G + F+G+N+   
Sbjct: 18  EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT-GEIKFEGQNIYGS 76

Query: 149 EPEERSL-AGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
           + +   L   + M FQ P   P    +N+ +       + ++L    +      A ++ +
Sbjct: 77  KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE 136

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
            +      D L+RN  + FSGG+++R  I +   +   + +LDE  S LD  +  ++ + 
Sbjct: 137 TK------DNLDRNA-QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189

Query: 266 VNGLLTPKNSLLMITH 281
           +   L  + + +M+TH
Sbjct: 190 LME-LKHQYTFIMVTH 204

Length = 251

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 59/277 (21%), Positives = 96/277 (34%), Gaps = 64/277 (23%)

Query: 60  DSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKS 119
           +S +           Q + ++ G        K  +LK V+ +   GE+ A+MG +G+GK+
Sbjct: 7   NSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKH-LLKNVSGVAKPGELLAVMGSSGAGKT 65

Query: 120 TLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFL-- 177
           TL   L        +   V   G  LL   P +        ++    ++     I  L  
Sbjct: 66  TLMNALAFR-----SPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL----FIPTLTV 116

Query: 178 --HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR--------------NVN 221
             H+ + A  R + +              K E+     + L                   
Sbjct: 117 REHLMFQAHLR-MPRR-----------VTKKEKRERVDEVLQALGLRKCANTRIGVPGRV 164

Query: 222 EGFSGGERKR----NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLL 277
           +G SGGERKR    +E+L        L   DE  SGLD      V + + GL     +++
Sbjct: 165 KGLSGGERKRLAFASELLTDPP----LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTII 220

Query: 278 MITHYRRLLEFIKPT------FIHI--MEDGRIIKTG 306
              H        +P+      F  I  M +GR+   G
Sbjct: 221 CTIH--------QPSSELFELFDKIILMAEGRVAYLG 249

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 30/222 (13%)

Query: 73  KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL----VGH 128
             Q + Q+ G+     +     LK +NL + E EV AI+G +G GKST  K L       
Sbjct: 8   MKQEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMV 65

Query: 129 PDYEVTEGSVVFKGENLLEME---PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR- 184
           P+ ++T G + + G N+L+ +    E R   G  M FQ     P   +I F ++AY  R 
Sbjct: 66  PNVKLT-GEMNYNGSNILKGKVDLVELRKNIG--MVFQKGNPFP--QSI-FDNVAYGPRI 119

Query: 185 -----RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV 239
                ++KL +     ++  A      +RL  +            SGG+++R  I +   
Sbjct: 120 HGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA--------LSLSGGQQQRLCIARALA 171

Query: 240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
              D+ ++DE  S LD  + R + + +   L  K +++++TH
Sbjct: 172 TNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTH 212

Length = 259

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 55/228 (24%), Positives = 85/228 (37%), Gaps = 53/228 (23%)

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTE---GSVVFKGENLLEMEPEERSLA 156
           ++E EV  I+G NG GK+T  K+L G   PD    E    +V +K +    ++ +     
Sbjct: 22  ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQ---YIKAD----- 73

Query: 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS--MKTD 214
                ++  V        D L               I    FY + Y K E         
Sbjct: 74  -----YEGTVR-------DLLS-------------SITKD-FYTHPYFKTEIAKPLQIEQ 107

Query: 215 FLNRNVNEGFSGGERKRNEILQLAVLG--ADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272
            L+R V E  SGGE +R  I   A L   AD+ +LDE  + LDV+     +K +      
Sbjct: 108 ILDREVPE-LSGGELQRVAI--AACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164

Query: 273 KNSLLMITHYRRLLEFIKPTFIH---IMEDGRIIKTGDASIATVLEEG 317
                 +  +    + I   ++    I+ +G     G A+    L  G
Sbjct: 165 NEKTAFVVEH----DIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSG 208

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 43/182 (23%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE----NLLEME 149
           +L+ V+L VN GE   + G +GSGKSTL + L    +Y   EG ++ + E    +L+  E
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA--NYLPDEGQILVRHEGEWVDLVTAE 83

Query: 150 PEE-----RSLAGLFMSFQSPVEIPGVNNIDFL-----------HMAYNARRRKLGQPEI 193
           P E     R+  G    F     IP V+ +D +            +A       L +  +
Sbjct: 84  PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNL 141

Query: 194 GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSG 253
                      +L  L+  T          FSGGE++R  I +  ++   + +LDE  + 
Sbjct: 142 P---------ERLWSLAPAT----------FSGGEQQRVNIARGFIVDYPILLLDEPTAS 182

Query: 254 LD 255
           LD
Sbjct: 183 LD 184

Length = 235

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 224 FSGGERKRNEILQLA---VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
            SGG+R+R   + +A   +    + ILDE  S LD +    + +A+  L   K ++++I 
Sbjct: 97  LSGGQRQR---IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGK-TVIVIA 152

Query: 281 HYRRLLEFIKPTFIHIMEDGR 301
           H  RL        I +++DGR
Sbjct: 153 H--RLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 41.7 bits (99), Expect = 7e-05
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYR 283
            SGGE+ R  + +L +   +L +LDE  + LD+++   +      L     ++++++H R
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES---IEALEEALKEYPGTVILVSHDR 127

Query: 284 RLLEFIKPTFIHIMEDGR 301
             L+ +    I + EDG+
Sbjct: 128 YFLDQVATKIIEL-EDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 27/203 (13%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP--- 150
           +L G+N  V  GE  A++G +GSGKST+ ++L+      + EG +  +GE L  M     
Sbjct: 15  VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGRNG 72

Query: 151 -----EERSLAGLF----MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY 201
                +E+ L  +     M FQS    P    +D +     A    LG       E    
Sbjct: 73  PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE---APVLVLGMA---RAEAEKR 126

Query: 202 LYPKLERLSM--KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
               L+ + +  K D +   +    SGG+++R  I +   +   + + DE+ S LD + +
Sbjct: 127 AMELLDMVGLADKADHMPAQL----SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182

Query: 260 RDVAKAVNGLLTPKN-SLLMITH 281
            +V   +  L +  + ++L++TH
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTH 205

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 43.6 bits (104), Expect = 8e-05
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 14/93 (15%)

Query: 79  QVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LVGHPDYEVT 134
           ++  ++ V  +  + I  L  V+L +  GE+  ++G +G+GKSTL +   L+  P    T
Sbjct: 3   ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP----T 58

Query: 135 EGSVVFKGENLLEMEPEERSLA----GLFMSFQ 163
            G V+  G++L  +  +E   A    G  M FQ
Sbjct: 59  SGRVLVDGQDLTALSEKELRKARRQIG--MIFQ 89

Length = 343

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 87  IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146
           +A   + IL+ ++L +  G V A++G+NG+GKSTL K L G              G+  L
Sbjct: 9   VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68

Query: 147 EMEP 150
             EP
Sbjct: 69  NGEP 72

Length = 272

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 19/176 (10%)

Query: 87  IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146
           I + K+ IL  V+  V  G + A+MG +G+GK+TL  VL       VT G V+  G+ L+
Sbjct: 771 IKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE----RVTTG-VITGGDRLV 825

Query: 147 EMEPEERSLA---GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI-EFYAYL 202
              P + S     G     Q  + +P     + L   ++A  R   QP+     E   Y+
Sbjct: 826 NGRPLDSSFQRSIGYVQ--QQDLHLPTSTVRESLR--FSAYLR---QPKSVSKSEKMEYV 878

Query: 203 YPKLERLSMKT--DFLNRNVNEGFSGGERKRNEI-LQLAVLGADLAILDEIDSGLD 255
              ++ L M++  D +     EG +  +RKR  I ++L      L  LDE  SGLD
Sbjct: 879 EEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 28/190 (14%)

Query: 78  LQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
           +++  LT +  E    +++ L  VN+ + +GE   ++G  GSGKSTL + L G    + T
Sbjct: 3   IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--LKPT 60

Query: 135 EGSVVFKGENLLEME---PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP 191
            G ++  G ++ + +    + R   GL   FQ P E           +A+      L + 
Sbjct: 61  SGKIIIDGVDITDKKVKLSDIRKKVGLV--FQYP-EYQLFEETIEKDIAFGPINLGLSEE 117

Query: 192 EIGPIEFYAYLYPKLERLSMKT------DFLNRNVNEGFSGGERKRNEILQLAVLGADLA 245
           EI           +++R +M        D+ +++  E  SGG+++R  I  +  +   + 
Sbjct: 118 EI---------ENRVKR-AMNIVGLDYEDYKDKSPFE-LSGGQKRRVAIAGVVAMEPKIL 166

Query: 246 ILDEIDSGLD 255
           ILDE  +GLD
Sbjct: 167 ILDEPTAGLD 176

Length = 287

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 47/246 (19%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           E+L  +NL +  GE   I+G +GSGKSTL+K+L     Y    G V+  G +L   +P  
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHGQVLVDGVDLAIADPAW 528

Query: 153 -RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
            R   G+ +  Q  V       +NI             L  P   P E   +      +L
Sbjct: 529 LRRQMGVVL--QENVLFSRSIRDNI------------ALCNPGA-PFEHVIH----AAKL 569

Query: 210 SMKTDFL-------NRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA- 258
           +   DF+       N  V E     SGG+R+R  I +  V    + I DE  S LD ++ 
Sbjct: 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629

Query: 259 ---LRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE 315
              +R++ +   G      ++++I H  RL        I ++E G+I ++G      +L 
Sbjct: 630 ALIMRNMREICRG-----RTVIIIAH--RLSTVRACDRIIVLEKGQIAESG--RHEELLA 680

Query: 316 EGGYKA 321
             G  A
Sbjct: 681 LQGLYA 686

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 37/222 (16%)

Query: 51  RVTAALSAVDSPLKSSS---DGQDEKSQPLLQVTG-LTAVIAE-----SKQEILKGVNLL 101
           R +AA S + + L  +    DG    S+P+ +  G L   I +     +    L+ VN  
Sbjct: 282 RGSAAYSRIRAMLAEAPVVKDG----SEPVPEGRGELDVNIRQFTYPQTDHPALENVNFT 337

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-RSLAGLFM 160
           +  G++  I G  GSGKSTL  ++  H  ++V+EG + F    L +++ +  RS   +  
Sbjct: 338 LKPGQMLGICGPTGSGKSTLLSLIQRH--FDVSEGDIRFHDIPLTKLQLDSWRSRLAV-- 393

Query: 161 SFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP--IEFYAYL---YPKLERL--SMKT 213
                     V+   FL     A    LG+P+     IE  A L   +  + RL     T
Sbjct: 394 ----------VSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDT 443

Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
           +   R V    SGG+++R  I +  +L A++ ILD+  S +D
Sbjct: 444 EVGERGVM--LSGGQKQRISIARALLLNAEILILDDALSAVD 483

Length = 569

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVT 134
           +L+   L     E    +  G++  +N GE+  I G NG+GK++L ++L G   PD    
Sbjct: 1   MLEARNLACERDERI--LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---- 54

Query: 135 EGSVVFKGENLLEMEPE 151
            G V+++GE +     E
Sbjct: 55  AGEVLWQGEPIRRQRDE 71

Length = 204

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 45/290 (15%)

Query: 28  FTLPALPLLCRRSNYHRHHLSLNRVTAALS----AVDS-PLKSSSDGQDEKSQPLLQVTG 82
           F L  LP++   S+  +  +SL R+   LS      DS   ++   G+       + V  
Sbjct: 588 FPLNILPMVI--SSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNS----ITVHN 641

Query: 83  LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
            T   A      L G+   + EG + A++G+ G GKS+L   L+   + +  EG V  KG
Sbjct: 642 ATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA--EMDKVEGHVHMKG 699

Query: 143 ENLLEMEPEERSLAGLFMSFQSPVEIPGV-NNIDFLHMAYNARRRKLGQPEIGPIEFYAY 201
                      S+A  ++  Q+ ++   +  NI F         +++       +E  A 
Sbjct: 700 -----------SVA--YVPQQAWIQNDSLRENILFGKALNEKYYQQV-------LEACA- 738

Query: 202 LYPKLERLSM--KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
           L P LE L    +T+   + VN   SGG+++R  + +     AD+ + D+  S +D    
Sbjct: 739 LLPDLEILPSGDRTEIGEKGVN--LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796

Query: 260 RDVAKAV---NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           + + + V    G+L  K  +L +TH    L   +   I +M  G+I + G
Sbjct: 797 KHIFEHVIGPEGVLKNKTRIL-VTHGISYLP--QVDVIIVMSGGKISEMG 843

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 53/241 (21%), Positives = 84/241 (34%), Gaps = 54/241 (22%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           ++V  L+   A     +LK V+  V  GE   I+G+ G+GKSTL   L      E  EG 
Sbjct: 7   IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF--LEAEEGK 64

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
           +                                ++ ID   +     R  L      P  
Sbjct: 65  IE-------------------------------IDGIDISTIPLEDLRSSLTIIPQDPTL 93

Query: 198 FYAYLYPKLERLSMKTD---FLNRNVNEG---FSGGERKRNEILQLAVLG------ADLA 245
           F   +   L+     +D   +    V+EG    S G+R      QL  L         + 
Sbjct: 94  FSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQR------QLLCLARALLKRPRVL 147

Query: 246 ILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT 305
           +LDE  + +D      + K +    T  +++L I H  RL   I    I +M+ G + + 
Sbjct: 148 VLDEATASIDYATDALIQKTIREEFT-NSTILTIAH--RLRTIIDYDKILVMDAGEVKEY 204

Query: 306 G 306
            
Sbjct: 205 D 205

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE-GSVVFKGENLLEME 149
           IL  V+L +  GE  AI+G +GSGKSTL ++L+G   +E  E GSV + G++L  ++
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG---FETPESGSVFYDGQDLAGLD 521

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 38/217 (17%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDY 131
           + PLL    L    + +++ +   ++  V+ GE   + G NG+GK+TL +VL G  H + 
Sbjct: 8   APPLLAAHALA--FSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE- 64

Query: 132 EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN-------NIDFLHMAYNAR 184
                     G+  ++ +   R     FM++     +PG+        N+ FL   +  R
Sbjct: 65  ---------SGQIQIDGKTATRGDRSRFMAYLG--HLPGLKADLSTLENLHFLCGLHGRR 113

Query: 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
            +++    +  +    Y            D L R +    S G++KR  + +L +  A L
Sbjct: 114 AKQMPGSALAIVGLAGY-----------EDTLVRQL----SAGQKKRLALARLWLSPAPL 158

Query: 245 AILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
            +LDE  + LD++ +  V + ++  L    + L+ TH
Sbjct: 159 WLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195

Length = 214

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 48/230 (20%)

Query: 71  DEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD 130
           +   +P+L+V  L+          ++ V+  V  GE+  I G  G+G++ L++ L G   
Sbjct: 257 EGIGEPVLEVRNLSG------GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR- 309

Query: 131 YEVTEGSVVFKGENLLEMEP------------EERSLAGLFMSFQSPVEIPGVNNIDFLH 178
              + G ++  G+ +    P            E+R   GL +     +      NI    
Sbjct: 310 -PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM--SIA----ENITLAS 362

Query: 179 MAYNARR--------RKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK 230
           +   +RR        R L +  I              RL +KT    + +    SGG ++
Sbjct: 363 LRRFSRRGLIDRRKERALAERYI-------------RRLRIKTPSPEQPIGT-LSGGNQQ 408

Query: 231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT 280
           +  + +       + ILDE   G+DV A  ++ + +  L     ++LMI+
Sbjct: 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458

Length = 500

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 30/203 (14%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           + ++  L  V+  V +GE  +I+G NGSGKST  +++ G    E   G ++  G+ L E 
Sbjct: 17  DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--LEAESGQIIIDGDLLTEE 74

Query: 149 EP-EERSLAGLFMSFQSP--------VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY 199
              + R   G  M FQ+P        VE      ++   + +   + ++ +         
Sbjct: 75  NVWDIRHKIG--MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNE--------- 123

Query: 200 AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
                 LE + M  DF  R      SGG+++R  I     +   + ILDE  S LD +  
Sbjct: 124 -----ALELVGM-QDFKEREPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176

Query: 260 RDVAKAVNGLLTPKN-SLLMITH 281
            ++ K + G+      +++ ITH
Sbjct: 177 LELIKTIKGIRDDYQMTVISITH 199

Length = 279

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 186 RKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD-- 243
           R L   E+  ++    L+ + + L +    +      G S G ++   +L   +      
Sbjct: 157 RNLRNIELKLLDLVKRLFLESDLLRLLKLLIK-----GISDGTKRLLALLLALLSALPKG 211

Query: 244 -LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLE 287
            L ++DE ++GL    LR + + +  L      L+  TH   LL+
Sbjct: 212 SLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLLLD 256

Length = 256

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145
           +E L+ V+  + +GE   + G +G+GKSTL K++ G  +   T G ++  G +L
Sbjct: 15  REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG--EERPTRGKILVNGHDL 66

Length = 223

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 28/203 (13%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-EVT--EGSVVFKGENLLEM 148
           + +L  +NL +   +V A +G +G GKST  + L    D  E T  EG + F G N    
Sbjct: 95  KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154

Query: 149 EP---EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
           +    E R+  G+     +P E+   +N+     AY  R   +   +I           K
Sbjct: 155 KISSLELRTRIGMVFQKPTPFEMSIFDNV-----AYGPRNNGINDRKI---------LEK 200

Query: 206 LERLSMKTDFLNRNVNE-------GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
           +   S+K+  L   V +         SGG+++R  I +   L  ++ ++DE  S LD  A
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260

Query: 259 LRDVAKAVNGLLTPKNSLLMITH 281
              + + +   L  K S++++TH
Sbjct: 261 TAKIEELILE-LKKKYSIIIVTH 282

Length = 329

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 34/223 (15%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPE 151
           ++  ++  +  GE   ++G NG+GKST++++L+G   PD     G +   GE      P 
Sbjct: 19  VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD----RGKITVLGEP----VPS 70

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR------RKLGQPEIGPIEFYAYLYPK 205
              LA         V I  V   D L   +  R       R  G   +   E  A +   
Sbjct: 71  RARLA--------RVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSL 119

Query: 206 LE--RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263
           LE  RL  K D     +    SGG ++R  + +  +    L ILDE  +GLD  A   + 
Sbjct: 120 LEFARLESKADVRVALL----SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175

Query: 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           + +  LL    ++L+ TH+    E +      ++E GR I  G
Sbjct: 176 ERLRSLLARGKTILLTTHFMEEAERLCDRLC-VLESGRKIAEG 217

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 39/245 (15%)

Query: 50  NRVTAALSAVDSP-----LKSSSDGQ----DEKSQPLLQVTGLTAVIAESKQEILK---G 97
           NR     SA   P     L S   G      E + PLL V  L  V    ++ ILK    
Sbjct: 239 NRAATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQL-QVAFPIRKGILKRTVD 297

Query: 98  VNLLVNE-------GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL----- 145
            N++V         GE   ++G++GSGKST    L+       ++G + F G+ L     
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL---RLINSQGEIWFDGQPLHNLNR 354

Query: 146 LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
            ++ P    +  +F    S +  P +N +  +         ++ QP +   +    +   
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLN-PRLNVLQII-----EEGLRVHQPTLSAAQREQQVIAV 408

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
           +E + +  +  +R   E FSGG+R+R  I +  +L   L ILDE  S LD    + V   
Sbjct: 409 MEEVGLDPETRHRYPAE-FSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQ 463

Query: 266 VNGLL 270
           +  LL
Sbjct: 464 ILALL 468

Length = 529

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           E +K ++  + EG+  AI+G+NGSGKSTL+K+L G    E T G ++     L   +   
Sbjct: 27  EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGELLIDDHPLHFGDYSY 84

Query: 153 RSLAGLFMSFQSP 165
           RS   + M FQ P
Sbjct: 85  RS-QRIRMIFQDP 96

Length = 267

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 34/232 (14%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
           + +L+ V++ V  G++  ++G  GSGKSTL + L+    +E++EG V             
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS--QFEISEGRVW-----------A 719

Query: 152 ERSLAGLFMSFQSPVEIPGV-NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           ERS+A  ++  Q+ +    V  NI F      AR     +         + L   L +L 
Sbjct: 720 ERSIA--YVPQQAWIMNATVRGNILFFDEEDAARLADAVR--------VSQLEADLAQLG 769

Query: 211 --MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD-ALRDVAKAVN 267
             ++T+   + VN   SGG++ R  + +      D+ +LD+  S LD     R V +   
Sbjct: 770 GGLETEIGEKGVN--LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827

Query: 268 GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS--IATVLEEG 317
           G L  K  +L  TH   ++   +  ++  + DGR+  +G ++  + T L   
Sbjct: 828 GALAGKTRVLA-THQVHVVP--RADYVVALGDGRVEFSGSSADFMRTSLYAT 876

Length = 1560

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 77  LLQVTGLTAVIAESKQ-----EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY 131
           LL+V  L+      +Q      +LK V+L VN GE  A+ G +G+GKSTL K L    +Y
Sbjct: 1   LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA--NY 58

Query: 132 EVTEGSV 138
               G +
Sbjct: 59  LPDSGRI 65

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 27/259 (10%)

Query: 72  EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HP 129
            K   L           E   E ++ ++  + +GE+   +G NG+GKST  K+L G   P
Sbjct: 17  IKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP 76

Query: 130 DYEVTEGSVVFKG-ENLLEMEPEERSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRK 187
               T G V   G +     E   RS+  +         ++P +++++ L + Y      
Sbjct: 77  ----TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY------ 126

Query: 188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAIL 247
               EI   EF   L    E L ++  FL   V +  S G+R R E+    +    +  L
Sbjct: 127 ----EIPDDEFAERLDFLTEILDLE-GFLKWPVRK-LSLGQRMRAELAAALLHPPKVLFL 180

Query: 248 DEIDSGLDV---DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304
           DE   GLDV     +R+  K  N     + ++L+ TH    +  +    + +++ G+++ 
Sbjct: 181 DEPTVGLDVNAQANIREFLKEYN--EERQATVLLTTHIFDDIATL-CDRVLLIDQGQLVF 237

Query: 305 TGDASIATVLEEGGYKAIS 323
            G  +     + G YK  S
Sbjct: 238 DGTLA-QLQEQFGPYKEFS 255

Length = 325

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 52/234 (22%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDY---EVTEGSVVFKGENLLE 147
           + +  VN    +G+ +AI+G+ GSGKSTL + +     P      V + ++  K ++   
Sbjct: 21  QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKD-KY 79

Query: 148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF--------- 198
           + P  + +    M FQ P      + ++          R++     GP  F         
Sbjct: 80  IRPVRKRIG---MVFQFPESQLFEDTVE----------REI---IFGPKNFKMNLDEVKN 123

Query: 199 YAYLYPKLERLSMKTDFLNRNVNE----GFSGGERKRNEILQLAVLGADLAILDEIDSGL 254
           YA+      RL M   F +R+V        SGG+ ++  I+ +  +  D+ +LDE  +GL
Sbjct: 124 YAH------RLLMDLGF-SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176

Query: 255 DVDALRDVAKAVNGLLTPKN-SLLMITH----YRRLLEFIKPTFIHIMEDGRII 303
           D  + R V + +  L T +N ++++++H      R  + +      +M++G I+
Sbjct: 177 DPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVI-----VMKEGSIV 225

Length = 286

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 59/255 (23%), Positives = 98/255 (38%), Gaps = 82/255 (32%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE- 151
           + L  + L   +GE   ++G +G+GKS+L +VL                  NLLEM P  
Sbjct: 16  QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------------------NLLEM-PRS 56

Query: 152 -ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY-LYPK---- 205
              ++AG    F      P    I  L       RR +G      + F  Y L+P     
Sbjct: 57  GTLNIAGNHFDFSKT---PSDKAIREL-------RRNVG------MVFQQYNLWPHLTVQ 100

Query: 206 -------------------------LERLSMKTDFLNRNVNEGF----SGGERKRNEILQ 236
                                    LERL +   + +R     F    SGG+++R  I +
Sbjct: 101 QNLIEAPCRVLGLSKDQALARAEKLLERLRL-KPYADR-----FPLHLSGGQQQRVAIAR 154

Query: 237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI 296
             ++   + + DE  + LD +    +   +  L     + +++TH    +E  + T   +
Sbjct: 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE---VEVARKTASRV 211

Query: 297 --MEDGRIIKTGDAS 309
             ME+G I++ GDAS
Sbjct: 212 VYMENGHIVEQGDAS 226

Length = 242

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 14/211 (6%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE--- 132
           P ++V  L+     SK   ++G+++ +   +V AI+G +G GKST  K L    + E   
Sbjct: 6   PAIKVKDLSFYYNTSKA--IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPV 63

Query: 133 VTEGSVVFKGENLLEMEPE-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR-RRKLGQ 190
             EG V F G+N+ +      R    + M FQ P   P   +I + ++AY  R   KL Q
Sbjct: 64  KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP--MSI-YENVAYGVRISAKLPQ 120

Query: 191 PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250
            ++  I   A     L       D LN++   G SGG+++R  I +   +   + ++DE 
Sbjct: 121 ADLDEIVESALKGAAL--WQEVKDKLNKSA-LGLSGGQQQRLCIARALAIKPKVLLMDEP 177

Query: 251 DSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
            S LD  A   V + ++ L + + ++ ++TH
Sbjct: 178 CSALDPIATMKVEELIHSLRS-ELTIAIVTH 207

Length = 259

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYEVT 134
           L+ + G++       + I   ++L V  G++ AIMG +G GK+TL +++ G   PD    
Sbjct: 7   LVDMRGVS--FTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---- 60

Query: 135 EGSVVFKGENLLEMEPEERSLAGLFMS--FQS 164
            G ++F GEN+  M           MS  FQS
Sbjct: 61  HGEILFDGENIPAMSRSRLYTVRKRMSMLFQS 92

Length = 269

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 72  EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY 131
              + +L+V  L+ V        +K V+  V  GE+  I G  G+G+S L + + G    
Sbjct: 252 TPGEVVLEVEDLS-VKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG--LR 308

Query: 132 EVTEGSVVFKGENLLEME-PEERSLAGL 158
           +   G ++  G+++L    P ER   GL
Sbjct: 309 KPASGRILLNGKDVLGRLSPRERRRLGL 336

Length = 501

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 16/76 (21%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV---LVGHPDYEVTEGSVVFKGENLLEMEPE 151
           +  +NL + +GE   ++G +GSGK+T  K+   L+     E T G +   GE++ E +P 
Sbjct: 17  VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-----EPTSGEIFIDGEDIREQDPV 71

Query: 152 E--RSL------AGLF 159
           E  R +       GLF
Sbjct: 72  ELRRKIGYVIQQIGLF 87

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 52/269 (19%), Positives = 93/269 (34%), Gaps = 49/269 (18%)

Query: 48  SLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQ---VTGLT----AVIAESKQEILKGVNL 100
           +L R+     A+++    +        +         G+T    ++     Q +L  +N 
Sbjct: 355 TLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNF 414

Query: 101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFM 160
            V  GE   I G++G+GK++L + L G   +          G   + M  +      LF+
Sbjct: 415 EVRPGERLLITGESGAGKTSLLRALAGLWPW----------GSGRISMPADSAL---LFL 461

Query: 161 SFQSPVEIPGV---------NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
             Q P    G             DF      A   K+G            L  +L+    
Sbjct: 462 P-QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG---------DLAERLDEEDR 511

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
               L        SGGE++R    +L +       LDE  S LD +    + + +   L 
Sbjct: 512 WDRVL--------SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL- 562

Query: 272 PKNSLLMITHYRRLLEFIKPTFIHIMEDG 300
           P  +++ + H   L  F     + +++D 
Sbjct: 563 PDATVISVGHRPTLWNFHSR-QLELLDDA 590

Length = 604

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           LKGVNL + +GE  +++G +G GKSTL  ++ G    + T G V+ +G+ + E  P+   
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA--QPTSGGVILEGKQITEPGPDR-- 56

Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
                + FQ+   +P +   + + +A +     L + E
Sbjct: 57  ----MVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE 90

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 29/223 (13%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-- 152
           L  VNL + +G   A +G  GSGKST+ ++L G   +  T+GSV      +      +  
Sbjct: 23  LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--HVPTQGSVRVDDTLITSTSKNKDI 80

Query: 153 ---RSLAGLFMSFQSP----VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
              R   GL   FQ P     E   + ++ F    +           +   E  A    K
Sbjct: 81  KQIRKKVGLV--FQFPESQLFEETVLKDVAFGPQNFG----------VSQEEAEALAREK 128

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
           L  + +      +N  E  SGG+ +R  I  +  +   + +LDE  +GLD    +++   
Sbjct: 129 LALVGISESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL 187

Query: 266 VNGLLTPKNSLLMITHYRRLLEFIK--PTFIHIMEDGRIIKTG 306
              L     +++++TH   L++ +     F++++E G+++ +G
Sbjct: 188 FKKLHQSGMTIVLVTH---LMDDVANYADFVYVLEKGKLVLSG 227

Length = 280

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 43/203 (21%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
             L++ G+T    + K   +  ++  V  GE+  ++G NG+GK+T  ++++G    E TE
Sbjct: 1   MALEIEGVTKSFGDKK--AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--LEPTE 56

Query: 136 GSVVFKGENLLEME-------PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR---- 184
           G + + G  L +         PEER L             P +   D L   Y A     
Sbjct: 57  GEITWNGGPLSQEIKNRIGYLPEERGL------------YPKMTVEDQL--KYLAELKGM 102

Query: 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL 244
            +   Q ++            LERL +      + + E  S G +++ + +   +   +L
Sbjct: 103 PKAEIQKKLQ------AW---LERLEI-VGKKTKKIKE-LSKGNQQKIQFISAVIHEPEL 151

Query: 245 AILDEIDSGLD---VDALRDVAK 264
            ILDE  SGLD   V+ L+D   
Sbjct: 152 LILDEPFSGLDPVNVELLKDAIF 174

Length = 300

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 58/250 (23%), Positives = 101/250 (40%), Gaps = 41/250 (16%)

Query: 43  HRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLV 102
                 + R    +S   + +  S       S   + + G++    +  + ++ G++  V
Sbjct: 13  RLELSPIERKHQGISEAKASIPGS------MSTVAIDLAGVSKSYGD--KAVVNGLSFTV 64

Query: 103 NEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFM 160
             GE   ++G NG+GKST++++++G   PD     G +   G       P    LA    
Sbjct: 65  ASGECFGLLGPNGAGKSTIARMILGMTSPD----AGKITVLGVP----VPARARLA---- 112

Query: 161 SFQSPVEIPGVNNIDFLHMAYNARR------RKLGQPEIGPIEFYAYLYPKLE--RLSMK 212
                  I  V   D L + +  R       R  G   +   E  A +   LE  RL  K
Sbjct: 113 ----RARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESK 165

Query: 213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272
            D     V++  SGG ++R  + +  +    L ILDE  +GLD  A   + + +  LL  
Sbjct: 166 AD---ARVSD-LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221

Query: 273 KNSLLMITHY 282
             ++L+ TH+
Sbjct: 222 GKTILLTTHF 231

Length = 340

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 26/200 (13%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV------LVGHPDYEVTEGSVVF--KGENLL 146
           LK +N++V+E +V A++G +G GKST  +       L     Y   EG ++      N+L
Sbjct: 32  LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY---EGEIILHPDNVNIL 88

Query: 147 --EMEPEERSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYL 202
             E++P E  +  + M FQ P   P     N+ +       +RR + +  +      A L
Sbjct: 89  SPEVDPIEVRMR-ISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAAL 147

Query: 203 YPKL-ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261
           + ++ +RL         ++    SGG+++R  I +      ++ + DE  S LD  A   
Sbjct: 148 WDEVKDRLG--------DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATAS 199

Query: 262 VAKAVNGLLTPKNSLLMITH 281
           + + ++  L  K ++L++TH
Sbjct: 200 IEELISD-LKNKVTILIVTH 218

Length = 265

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 22/222 (9%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEME 149
           + +LKG+NL  +   V  ++G NG GKSTL   L G   P     +G+V+++G+ L   +
Sbjct: 14  EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ----KGAVLWQGKPL---D 66

Query: 150 PEERSLAGLFMS----FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
             +R L  L       FQ P +     +ID   +A++ R   + + EI           +
Sbjct: 67  YSKRGLLALRQQVATVFQDPEQQIFYTDIDS-DIAFSLRNLGVPEAEI------TRRVDE 119

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
              L     F ++ + +  S G++KR  I    VL A   +LDE  +GLD      +   
Sbjct: 120 ALTLVDAQHFRHQPI-QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178

Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           +  ++   N +++ +H   L+  I    ++++  G+I+  G 
Sbjct: 179 IRRIVAQGNHVIISSHDIDLIYEISDA-VYVLRQGQILTHGA 219

Length = 271

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 19/107 (17%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE-NLLEMEPEER 153
           L  ++L   EG+V  ++G NGSGKSTLS ++ G      T G V   GE +++ +     
Sbjct: 40  LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG--SLSPTVGKVDRNGEVSVIAIS---- 93

Query: 154 SLAGLFMSFQSPVEIPGVNNIDF--LHMAYNARRRKLGQPEIGPIEF 198
             AGL        ++ G+ NI+F  L M +  +  K   P+I  IEF
Sbjct: 94  --AGL------SGQLTGIENIEFKMLCMGFKRKEIKAMTPKI--IEF 130

Length = 264

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 28/202 (13%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEME 149
            ILK VNL + +  V A++G +G GKST  + L    D       EG +   G ++ +  
Sbjct: 17  HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76

Query: 150 ---PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
               E R   G  M FQ P   P   +I F ++AY  R    G+ +   IE       + 
Sbjct: 77  VDVVELRKKVG--MVFQKPNPFP--KSI-FDNVAYGLRIH--GEDDEDFIE-------ER 122

Query: 207 ERLSMKTDFLNRNVNE-------GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
              S+K   L   V +       G SGG+++R  I +   +  ++ ++DE  S LD  + 
Sbjct: 123 VEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST 182

Query: 260 RDVAKAVNGLLTPKNSLLMITH 281
             +   ++  L    +++++TH
Sbjct: 183 TKIEDLIHK-LKEDYTIVIVTH 203

Length = 250

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 71/241 (29%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYEVTEGSVVFKGENLLEM 148
            Q  L  V+    +G +   +G NG+GKST  K++ G+  PD     GSV   GE++L  
Sbjct: 14  TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD----SGSVQVCGEDVL-- 67

Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP----------IEF 198
                         Q+P E+    NI +L             PE  P          ++F
Sbjct: 68  --------------QNPKEVQ--RNIGYL-------------PEHNPLYLDMYVREYLQF 98

Query: 199 YAYLYPKLERLSMKTDFLNRNVNE----------------GFSGGERKRNEILQLAVLGA 242
            A +Y       MK   L + V E                  S G R+R  + Q  +   
Sbjct: 99  IAGIY------GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152

Query: 243 DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI 302
            + ILDE  +GLD + L ++   +  +   K ++++ TH  + +E I    I I+  G+I
Sbjct: 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDK-TIILSTHIMQEVEAICDRVI-IINKGKI 210

Query: 303 I 303
           +
Sbjct: 211 V 211

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 84  TAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG 142
           T  +   K+++L  ++  V  G + A+MG++G+GK+TL  VL G     V  G ++  G
Sbjct: 12  TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING 70

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 37/168 (22%)

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
           V  GE+  ++G NG+GKSTL   + G        GS+ F G+ L      E +    ++S
Sbjct: 22  VRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLS 78

Query: 162 ------FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDF 215
                 F  PV         + ++        L QP+    E    +   L  L    D 
Sbjct: 79  QQQTPPFAMPV---------WHYLT-------LHQPDKTRTELLNDVAGAL-AL---DDK 118

Query: 216 LNRNVNEGFSGGERKRNEI----LQL---AVLGADLAILDEIDSGLDV 256
           L R+ N+  SGGE +R  +    LQ+   A     L +LDE  + LDV
Sbjct: 119 LGRSTNQ-LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV 165

Length = 248

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 57/241 (23%)

Query: 59  VDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGK 118
           VD+P   S    +    PLL++  ++A   +    IL  + L +  G    ++G+NG+GK
Sbjct: 294 VDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRI--ILDSIKLNLVPGSRIGLLGRNGAGK 351

Query: 119 STLSKVLVGHPDYEVTEGSV-VFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFL 177
           STL K+L G  +     G + + KG  L           G F   Q          ++FL
Sbjct: 352 STLIKLLAG--ELAPVSGEIGLAKGIKL-----------GYFAQHQ----------LEFL 388

Query: 178 HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN---------RNVNEGFSGGE 228
                       + +  P++  A L P+     ++ D+L                FSGGE
Sbjct: 389 ------------RADESPLQHLARLAPQELEQKLR-DYLGGFGFQGDKVTEETRRFSGGE 435

Query: 229 RKRNEILQLAVL---GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL 285
           + R   L LA++     +L +LDE  + LD+D  + + +A   L+  + +L++++H R L
Sbjct: 436 KAR---LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEA---LIDFEGALVVVSHDRHL 489

Query: 286 L 286
           L
Sbjct: 490 L 490

Length = 638

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 46/237 (19%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE- 151
           + L  + L   EGE   ++G +G+GKS+L +VL                  NLLEM    
Sbjct: 16  QALFDITLDCPEGETLVLLGPSGAGKSSLLRVL------------------NLLEMPRSG 57

Query: 152 ERSLAGLFMSF-QSPVEIPGVN---NIDFLHMAYN-------------ARRRKLGQPEIG 194
             ++AG    F ++P +    +   N+  +   YN             A  R LG  +  
Sbjct: 58  TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKD- 116

Query: 195 PIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254
             +  A     L+RL +K  + +R      SGG+++R  I +  ++   + + DE  + L
Sbjct: 117 --QALARAEKLLKRLRLK-PYADR-YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172

Query: 255 DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI--MEDGRIIKTGDAS 309
           D +    +   +  L     + +++TH    +E  + T   +  ME+G I++ GDAS
Sbjct: 173 DPEITAQIVSIIKELAETGITQVIVTHE---VEVARKTASRVVYMENGHIVEQGDAS 226

Length = 242

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 28/200 (14%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEME-- 149
           L  ++L   + +V A++G +G GKST  + L    D       EG ++  GEN+ +    
Sbjct: 22  LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81

Query: 150 -PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
             E R   G  M FQ P   P   +I F ++AY  R        +  ++  AYL  ++ER
Sbjct: 82  VVELRRRVG--MVFQKPNPFP--KSI-FENVAYGLR--------VNGVKDKAYLAERVER 128

Query: 209 LSMKTDFLNRNVNE-------GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261
            S++   L   V +       G SGG+++R  I +   +  ++ ++DE  S LD  A + 
Sbjct: 129 -SLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQK 187

Query: 262 VAKAVNGLLTPKNSLLMITH 281
           + + ++  L  + +++++TH
Sbjct: 188 IEELIH-ELKARYTIIIVTH 206

Length = 253

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 49/254 (19%)

Query: 77  LLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LVGHPDYE 132
           +++++ +T V  +  + I  L  V+L V  G+++ ++G +G+GKSTL +   L+  P   
Sbjct: 1   MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--- 57

Query: 133 VTEGSVVFKGENLLEM-EPE---ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL 188
            T GSV+  G++L  +   E    R   G  M FQ              H    + R   
Sbjct: 58  -TSGSVIVDGQDLTTLSNSELTKARRQIG--MIFQ--------------HFNLLSSRTVF 100

Query: 189 GQPEIGPIEFYAYLYPKLER----------LSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
           G   + P+E       +++R          L  K D    N+    SGG+++R  I +  
Sbjct: 101 GNVAL-PLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL----SGGQKQRVAIARAL 155

Query: 239 VLGADLAILDEIDSGLD---VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
                + + DE  S LD     ++ ++ K +N  L    ++L+ITH   +++ I    + 
Sbjct: 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL--TILLITHEMDVVKRICDC-VA 212

Query: 296 IMEDGRIIKTGDAS 309
           ++ +G +I+ G  S
Sbjct: 213 VISNGELIEQGTVS 226

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG 127
           P++ V+ L+    +    +L GV+L V EG +  ++G NG+GK+TL + + G
Sbjct: 2   PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING 51

Length = 402

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 8/51 (15%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKG 142
           L  ++  V EGE+  I+G NGSGKSTLS ++ G     VT   +G+V  KG
Sbjct: 40  LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAG-----VTMPNKGTVDIKG 85

Length = 549

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 21/175 (12%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLE 147
           K ++LK +N+   E ++ AI+G +G GKSTL + L    D       EG+V+   EN+  
Sbjct: 16  KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75

Query: 148 MEPEERSLAG-LFMSFQSPVEIPG--VNNIDF----LHMAYNARRRKLGQPEIGPIEFYA 200
              +  +L   + M FQ P   P    +N+ F    L     +R  ++ +  +     + 
Sbjct: 76  PNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD 135

Query: 201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
            +   L +  +             SGG+++R  I ++  +  ++ ++DE  S LD
Sbjct: 136 EVKDNLHKSGL-----------ALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179

Length = 251

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH----PDYEVTEGSVVFKGENLLE 147
           ++ +K VNL V  G V+A++G +G GK+T  + +       P   VT G ++  G+++  
Sbjct: 17  KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT-GRILLDGQDIYG 75

Query: 148 --MEP-EERSLAGLFMSFQSPVEIPGV----NNIDFLHMAYNARRRKLGQPEIGPIEFYA 200
             ++P   R   G  M FQ P   P +    N +  L +A    R  L +     +   A
Sbjct: 76  PRVDPVAMRRRVG--MVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133

Query: 201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
                 +RL             G SGG+++R  I +   +  ++ ++DE  S LD
Sbjct: 134 LWDEVKDRLKTPA--------TGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180

Length = 252

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE 143
           L  ++L + +G++  I+G+NG GKSTL+K+  G   Y   EG ++  G 
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--YIPQEGEILLDGA 404

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           +  I G  GSGKSTL+K L       V     + + E L E++  E  
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELD 48

Length = 114

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 21/201 (10%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH----PDYEVTEGSVVFKGENLL 146
           K   +K V++   E  V AI+G +G GKST+ + +       P   VT G ++    ++ 
Sbjct: 16  KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVT-GKILLDDTDIY 74

Query: 147 EMEPEERSL-AGLFMSFQSPVEIPGVNNIDFLHMAY--NARRRKLGQPEIGPIEFYAYLY 203
           +   +  S+   + M FQ P   P ++  D +   Y  N R  +    EI        + 
Sbjct: 75  DRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI--------VE 126

Query: 204 PKLERLSM---KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
             L+R+++     D L  N  E  SGG+++R  I +   +  ++ ++DE  S LD  +  
Sbjct: 127 SSLKRVALWDEVKDRLKSNAME-LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTL 185

Query: 261 DVAKAVNGLLTPKNSLLMITH 281
            + + +   L  K +++++TH
Sbjct: 186 KIEELIEE-LKEKYTIIIVTH 205

Length = 252

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL--VGHPDYEV-TEGSVVFKGENLLE 147
           Q+IL+GV++ + + +V AI+G +G GKST  K L  +   + EV  EG V F  +N+ E
Sbjct: 20  QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE 78

Length = 261

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 24/192 (12%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           +QP ++V  L     E  ++ LK V++ + +  V A++G +G GKST  + L    D   
Sbjct: 9   AQPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66

Query: 134 T---EGSVVFKGENLLEME---PEERSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARR 185
               EG V  +GE++ E +    E R   G  M FQ P   P    +N+ +    + A +
Sbjct: 67  NCRIEGKVSIEGEDIYEPDVDVVELRKNVG--MVFQKPNPFPMSIYDNVAYGPRIHGANK 124

Query: 186 RKLGQPEIGPIEFYAYLYPKLERLS--MKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD 243
           + L     G +E         +  S  +K+  L+       SGG+++R  I +   +   
Sbjct: 125 KDLD----GVVENALRSAALWDETSDRLKSPALS------LSGGQQQRLCIARTLAVKPK 174

Query: 244 LAILDEIDSGLD 255
           + + DE  S LD
Sbjct: 175 IILFDEPTSALD 186

Length = 258

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           ++L  ++L +  G++ A++G +GSGK+TL +++ G      T G + F G ++  +   +
Sbjct: 16  QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVSRLHARD 73

Query: 153 RSLAGLF 159
           R +  +F
Sbjct: 74  RKVGFVF 80

Length = 353

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 14/29 (48%), Positives = 23/29 (79%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTL 121
           ++L  ++L +++GEV  I+G +GSGKSTL
Sbjct: 15  QVLHNIDLNIDQGEVVVIIGPSGSGKSTL 43

Length = 240

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
           +ERL ++   L+R+++E  SGGE +R  I    +  AD    DE  S LD+    +VA+ 
Sbjct: 197 VERLGLEN-ILDRDISE-LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARL 254

Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM 297
           +   L     +L++ H   +L+++    +HI 
Sbjct: 255 IRE-LAEGKYVLVVEHDLAVLDYLADN-VHIA 284

Length = 590

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 47/190 (24%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGE-------N 144
           LKGV++ + E  V A++G +G GKST  + L    D       +GSV   G+       N
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120

Query: 145 LLEMEPEERSLAGLFMSFQSPVEIPGV--NNIDFLHMAYNARR----------RKLGQPE 192
           L+E+    R   G  M FQSP   P     NI     +Y  R+          R LG+ +
Sbjct: 121 LVEL----RKRVG--MVFQSPNPFPKSIRENI-----SYGPRKHGDINTGLLARLLGRDD 169

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNE-------GFSGGERKRNEILQLAVLGADLA 245
               +       +L   S++   L   VN+       G SGG+++R  I +   +  ++ 
Sbjct: 170 KDAED-------ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVI 222

Query: 246 ILDEIDSGLD 255
           ++DE  S LD
Sbjct: 223 LMDEPASALD 232

Length = 305

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.98
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.97
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.97
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.97
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.97
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.97
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.97
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.96
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.96
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.96
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.96
COG4178	604	ABC-type uncharacterized transport system, permeas	99.96
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.96
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.95
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.95
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.95
KOG0062	582	consensus ATPase component of ABC transporters wit	99.95
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.95
KOG0062	582	consensus ATPase component of ABC transporters wit	99.95
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.95
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.95
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.94
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.94
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.93
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.93
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.9
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.9
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.9
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.89
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.89
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.88
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.87
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.87
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.86
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.86
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.85
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.84
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.83
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.83
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.82
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.82
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.81
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.81
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.81
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.74
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.69
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.69
PRK00064	361	recF recombination protein F; Reviewed	99.68
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.65
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.65
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.64
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.62
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.58
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.58
cd01128	249	rho_factor Transcription termination factor rho is	99.55
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.53
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.53
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.52
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.5
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.49
PRK10869	553	recombination and repair protein; Provisional	99.47
PHA02562	562	46 endonuclease subunit; Provisional	99.47
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.45
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.44
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.43
PRK13695	174	putative NTPase; Provisional	99.41
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.39
PRK03918	880	chromosome segregation protein; Provisional	99.39
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.38
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.38
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.38
COG3910	233	Predicted ATPase [General function prediction only	99.37
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.36
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.34
PRK01156	895	chromosome segregation protein; Provisional	99.33
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.3
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.27
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.26
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.24
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.22
PRK02224	880	chromosome segregation protein; Provisional	99.14
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.13
PRK06067	234	flagellar accessory protein FlaH; Validated	99.03
TIGR00611	365	recf recF protein. All proteins in this family for	98.98
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.96
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.94
smart00382	148	AAA ATPases associated with a variety of cellular	98.93
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.92
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.89
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.88
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.88
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.84
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.82
PRK14079	349	recF recombination protein F; Provisional	98.8
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.76
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.75
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.71
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.7
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.68
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.67
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.65
TIGR00767	415	rho transcription termination factor Rho. Members	98.6
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.55
PRK09825	176	idnK D-gluconate kinase; Provisional	98.54
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.53
PRK08149	428	ATP synthase SpaL; Validated	98.5
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.48
PRK06315	442	type III secretion system ATPase; Provisional	98.47
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.45
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.45
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.44
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	98.44
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.43
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.4
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.36
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.36
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.35
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.35
PRK00300	205	gmk guanylate kinase; Provisional	98.34
PRK09862	506	putative ATP-dependent protease; Provisional	98.34
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.31
PRK09099	441	type III secretion system ATPase; Provisional	98.28
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.28
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.25
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.24
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.21
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.2
PLN02796	347	D-glycerate 3-kinase	98.19
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.18

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-61  Score=419.51  Aligned_cols=222  Identities=24%  Similarity=0.376  Sum_probs=194.9

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++||+|+|++  ..+|++||++|++||+++|+||||||||||||||.||  ..|++|+|.++|+++.......+-+
T Consensus         1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L--E~~~~G~I~i~g~~~~~~~~~~~~R   76 (240)
T COG1126           1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL--EEPDSGSITVDGEDVGDKKDILKLR   76 (240)
T ss_pred             CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC--cCCCCceEEECCEeccchhhHHHHH
Confidence            47999999999974  7899999999999999999999999999999999998  6799999999998775432222223


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+++|||++.+||.+|+.+|+..+....   .   ...+++..+.+.++|+++|+. +..+.++.+ ||||||||||||
T Consensus        77 ~~vGmVFQ~fnLFPHlTvleNv~lap~~v---~---~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~q-LSGGQqQRVAIA  148 (240)
T COG1126          77 RKVGMVFQQFNLFPHLTVLENVTLAPVKV---K---KLSKAEAREKALELLEKVGLA-DKADAYPAQ-LSGGQQQRVAIA  148 (240)
T ss_pred             HhcCeecccccccccchHHHHHHhhhHHH---c---CCCHHHHHHHHHHHHHHcCch-hhhhhCccc-cCcHHHHHHHHH
Confidence            45889999999999999999987764321   1   234567778889999999997 567888875 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+.+|+++|+|||||+|||+...++++.+++++++|.|+|+|||++.++..+ +|||++|++|+|+++|+++.
T Consensus       149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V-adrviFmd~G~iie~g~p~~  222 (240)
T COG1126         149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV-ADRVIFMDQGKIIEEGPPEE  222 (240)
T ss_pred             HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh-hheEEEeeCCEEEEecCHHH
Confidence            999999999999999999999999999999999999999999999999999998 79999999999999997753

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-56  Score=405.91  Aligned_cols=221  Identities=21%  Similarity=0.349  Sum_probs=198.5

Q ss_pred             cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ||++++|+|.|+..   ...+|+||||+|++||++||+|.||||||||+|+|.+|  ..|++|+|.++|+++..++....
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L--e~PtsG~v~v~G~di~~l~~~~L   78 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL--ERPTSGSVFVDGQDLTALSEAEL   78 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCceEEEcCEecccCChHHH
Confidence            68999999999752   24699999999999999999999999999999999998  68999999999999998887543


Q ss_pred             h--hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          154 S--LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       154 ~--~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                      +  +..|+|+||++.++...|+.+|+.++....    +   ..+.+...++.++++.+|+. +..++++.+ ||||||||
T Consensus        79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia----g---~~k~ei~~RV~elLelVgL~-dk~~~yP~q-LSGGQKQR  149 (339)
T COG1135          79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA----G---VPKAEIKQRVAELLELVGLS-DKADRYPAQ-LSGGQKQR  149 (339)
T ss_pred             HHHHhhccEEeccccccccchHHhhhhhhHhhc----C---CCHHHHHHHHHHHHHHcCCh-hhhccCchh-cCcchhhH
Confidence            2  346999999999999999999998876542    1   33567788999999999997 678888875 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+|||||+.+|+|||+|||||+|||++.+.|+++|+++.++ |.||++|||.|+.+..+ |||++||++|++++.|+..
T Consensus       150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~i-c~rVavm~~G~lvE~G~v~  227 (339)
T COG1135         150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRI-CDRVAVLDQGRLVEEGTVS  227 (339)
T ss_pred             HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHH-hhhheEeeCCEEEEeccHH
Confidence            99999999999999999999999999999999999999765 99999999999999998 6999999999999999864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2.8e-56  Score=402.40  Aligned_cols=223  Identities=27%  Similarity=0.398  Sum_probs=196.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +++++||+++|+  ++++|+|+||+|++||+++|+||||||||||||+|+|+  .+|.+|+|.++|+++..++.+++++.
T Consensus         2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~--l~p~~G~V~l~g~~i~~~~~kelAk~   77 (258)
T COG1120           2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL--LKPKSGEVLLDGKDIASLSPKELAKK   77 (258)
T ss_pred             eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCCEEEECCCchhhcCHHHHhhh
Confidence            689999999997  47899999999999999999999999999999999998  67999999999999999988877654


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                       ++|+||.+.....+++.+.+.++..+....++.   ..++..+.+.++++.+++. ++.+|.+.+ |||||||||.|||
T Consensus        78 -ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~---~~~~D~~~v~~aL~~~~~~-~la~r~~~~-LSGGerQrv~iAr  151 (258)
T COG1120          78 -LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR---PSKEDEEIVEEALELLGLE-HLADRPVDE-LSGGERQRVLIAR  151 (258)
T ss_pred             -EEEeccCCCCCCCcEEeehHhhcCCcccccccC---CCHhHHHHHHHHHHHhCcH-HHhcCcccc-cChhHHHHHHHHH
Confidence             889999987777899999988775443222221   1233345688889999996 788888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+++|++|||||||++||..++.+++++++++.+ +|.|||+|+||++++..+ ||++++|++|++++.|+++.
T Consensus       152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry-ad~~i~lk~G~i~a~G~p~e  225 (258)
T COG1120         152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY-ADHLILLKDGKIVAQGTPEE  225 (258)
T ss_pred             HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEECCeEEeecCcch
Confidence            99999999999999999999999999999999984 589999999999999998 79999999999999999863

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-56  Score=393.08  Aligned_cols=220  Identities=19%  Similarity=0.303  Sum_probs=199.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      |++++||||+|+  ++.+++|+||+|++||+++++|||||||||+||+|.+|  ..|++|+|+++|+++..++..+.++ 
T Consensus         1 MI~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--iept~G~I~i~g~~i~~~d~~~LRr-   75 (309)
T COG1125           1 MIEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--IEPTSGEILIDGEDISDLDPVELRR-   75 (309)
T ss_pred             CceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--cCCCCceEEECCeecccCCHHHHHH-
Confidence            689999999997  47899999999999999999999999999999999998  7899999999999999998876554 


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      .+||+-|...+||.+|+.+|+.......    ++   .+++..+++.++++.+++++ ++.+|++.+ |||||+|||.+|
T Consensus        76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~----~w---~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e-LSGGQQQRVGv~  147 (309)
T COG1125          76 KIGYVIQQIGLFPHLTVAENIATVPKLL----GW---DKERIKKRADELLDLVGLDPSEYADRYPHE-LSGGQQQRVGVA  147 (309)
T ss_pred             hhhhhhhhcccCCCccHHHHHHhhhhhc----CC---CHHHHHHHHHHHHHHhCCCHHHHhhcCchh-cCcchhhHHHHH
Confidence            4788899999999999999998765431    22   34667788999999999976 588999876 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+.+|++||||||+++|||.++..+.+.+.++.++ |+|||+||||++++..+ +|||++|++|+|++.++|+.
T Consensus       148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kL-adri~vm~~G~i~Q~~~P~~  222 (309)
T COG1125         148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL-ADRIAVMDAGEIVQYDTPDE  222 (309)
T ss_pred             HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhh-hceEEEecCCeEEEeCCHHH
Confidence            9999999999999999999999999999999999866 99999999999999988 79999999999999998763

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.2e-55  Score=382.55  Aligned_cols=224  Identities=27%  Similarity=0.413  Sum_probs=199.0

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .+.|++++|+++|++  +.+++|+||+|++||+++|+||||||||||+|+|.|+  .+|++|+|+++|+++..++..++.
T Consensus         6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl--l~P~~GeI~i~G~~i~~ls~~~~~   81 (263)
T COG1127           6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL--LRPDKGEILIDGEDIPQLSEEELY   81 (263)
T ss_pred             cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc--CCCCCCeEEEcCcchhccCHHHHH
Confidence            678999999999964  7899999999999999999999999999999999998  789999999999999988875542


Q ss_pred             --hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          155 --LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       155 --~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                        +..++++||+..+|..+|+.||+.+......      ...+....+.+..-|+.+|+.....+..+.+ |||||++|+
T Consensus        82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~------~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE-LSGGM~KRv  154 (263)
T COG1127          82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHT------KLPESLIRELVLMKLELVGLRGAAADLYPSE-LSGGMRKRV  154 (263)
T ss_pred             HHHhheeEEeeccccccccchhHhhheehHhhc------cCCHHHHHHHHHHHHHhcCCChhhhhhCchh-hcchHHHHH
Confidence              3458999999999999999999987654321      1234555566777789999986657788875 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +||||++.+|+||++||||+||||.+...+-++|+++++. |.|+|+||||++.+..+ |||++++.+|+|++.|+++.
T Consensus       155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i-~Drv~~L~~gkv~~~Gt~~e  232 (263)
T COG1127         155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI-ADRVAVLADGKVIAEGTPEE  232 (263)
T ss_pred             HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhh-hceEEEEeCCEEEEeCCHHH
Confidence            9999999999999999999999999999999999999876 89999999999999887 79999999999999999874

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4.2e-54  Score=381.27  Aligned_cols=215  Identities=24%  Similarity=0.365  Sum_probs=183.2

Q ss_pred             cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--
Q 020520           77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--  152 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--  152 (325)
                      +++++||++.|+.+.  ..+|+++||+|++||+++|+|||||||||||++|.|+  ..|++|.|.++|+++..++...  
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l--d~pt~G~v~i~g~d~~~l~~~~~~   78 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL--DKPTSGEVLINGKDLTKLSEKELA   78 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCceEEECCEEcCcCCHHHHH
Confidence            478999999996533  3699999999999999999999999999999999998  5789999999999999887644  


Q ss_pred             -HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       153 -~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                       .++..++++||+..+++.+|+.+|+.++.....    ..   ......++.++++.+|+.....++++. +||||||||
T Consensus        79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~----~~---~~~~~~~~~~l~~~lgl~~~~~~~~p~-eLSGGqqQR  150 (226)
T COG1136          79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG----KS---AGRRKRAAEELLEVLGLEDRLLKKKPS-ELSGGQQQR  150 (226)
T ss_pred             HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC----CC---hhHHHHHHHHHHHhcCChhhhccCCch-hcCHHHHHH
Confidence             334569999999999999999999987653321    11   113345677788999997444436665 499999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      |||||||+.+|++||.||||.+||.++.+.|+++|+++.++ |+||||||||.+.+..  |||++.|++|++.
T Consensus       151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~--~dr~i~l~dG~~~  221 (226)
T COG1136         151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY--ADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh--CCEEEEEeCCeee
Confidence            99999999999999999999999999999999999999765 8999999999988874  6999999999954

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-54  Score=382.64  Aligned_cols=221  Identities=29%  Similarity=0.417  Sum_probs=187.1

Q ss_pred             CcEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           76 PLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ++++++|+++.|+...  .++|++|||+|.+||++||+|+||||||||.|+|+|+  .+|++|+|.++|+++........
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl--~~p~~G~I~~~G~~~~~~~~~~~   79 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL--EKPSSGSILLDGKPLAPKKRAKA   79 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCceEEECCcccCccccchh
Confidence            5799999999997521  1499999999999999999999999999999999998  67999999999988765433222


Q ss_pred             hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                      ....+.+|||||.  +-|..++.+.+..++..    .+.     .+...++.++++.+|+...++++++.+ |||||+||
T Consensus        80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~----~~~-----~~~~~~i~~~L~~VgL~~~~l~R~P~e-LSGGQ~QR  149 (252)
T COG1124          80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP----HGL-----SKSQQRIAELLDQVGLPPSFLDRRPHE-LSGGQRQR  149 (252)
T ss_pred             hccceeEEecCCccccCcchhHHHHHhhhhcc----CCc-----cHHHHHHHHHHHHcCCCHHHHhcCchh-cChhHHHH
Confidence            2345889999986  45666776665544322    111     122344888999999998999999986 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||||+.+|++||||||||+||...+.+|+++|.+++++ +.|+|+||||+..+..+ ||||+||++|++++.++..
T Consensus       150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~-cdRi~Vm~~G~ivE~~~~~  227 (252)
T COG1124         150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM-CDRIAVMDNGQIVEIGPTE  227 (252)
T ss_pred             HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH-hhheeeeeCCeEEEeechh
Confidence            99999999999999999999999999999999999999865 78999999999999998 6999999999999998765

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.2e-54  Score=387.28  Aligned_cols=221  Identities=23%  Similarity=0.342  Sum_probs=187.2

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++|++++|++.  ++|+||||+|++|++++|+||||||||||+|+|+|+  .+|++|+|.++|++.....    .
T Consensus         2 ~~~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~~~g~~~~~~~----~   73 (254)
T COG1121           2 MPMIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL--LKPSSGEIKIFGKPVRKRR----K   73 (254)
T ss_pred             CcEEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CcCCcceEEEccccccccc----c
Confidence            4589999999999742  699999999999999999999999999999999998  6899999999998765432    2


Q ss_pred             hccEEEeccCCccC--CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          155 LAGLFMSFQSPVEI--PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      ...|+||||...+-  ...|+.+++.++...+...++..   ..+.++.+.++|+++|+. ++.++.+++ |||||+|||
T Consensus        74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~---~~~d~~~v~~aL~~Vgm~-~~~~r~i~~-LSGGQ~QRV  148 (254)
T COG1121          74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRL---NKKDKEKVDEALERVGME-DLRDRQIGE-LSGGQKQRV  148 (254)
T ss_pred             CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccc---cHHHHHHHHHHHHHcCch-hhhCCcccc-cCcHHHHHH
Confidence            34599999976332  23689999887643322222222   223367789999999996 789999986 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      .|||||+++|++|||||||+|+|+.++..|+++|++++++|+||++||||+..+..+ +|+|+.| ++++++.|+++.
T Consensus       149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~-~D~vi~L-n~~~~~~G~~~~  224 (254)
T COG1121         149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY-FDRVICL-NRHLIASGPPEE  224 (254)
T ss_pred             HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh-CCEEEEE-cCeeEeccChhh
Confidence            999999999999999999999999999999999999998899999999999999987 6999877 578889998864

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-54  Score=378.96  Aligned_cols=226  Identities=26%  Similarity=0.340  Sum_probs=195.6

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh-
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS-  154 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~-  154 (325)
                      .+|+++||++.|++ ++.+|++|||+|++||+++|+|+||||||||||+|.|+  .+|++|+|.++|.++..+..++.+ 
T Consensus         2 ~~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl--~d~t~G~i~~~g~~i~~~~~k~lr~   78 (258)
T COG3638           2 MMIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL--VDPTSGEILFNGVQITKLKGKELRK   78 (258)
T ss_pred             ceEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc--cCCCcceEEecccchhccchHHHHH
Confidence            47999999999974 57899999999999999999999999999999999998  789999999999999887765432 


Q ss_pred             -hccEEEeccCCccCCCcchHHHHHHHHHHH----hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          155 -LAGLFMSFQSPVEIPGVNNIDFLHMAYNAR----RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       155 -~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                       +..++|+||++.+.+.+++.+|+..+....    ...++..   .++.+..+.++|+++|+. +....+.. +|||||+
T Consensus        79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglf---sk~dk~~Al~aLervgi~-~~A~qra~-~LSGGQQ  153 (258)
T COG3638          79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF---SKEDKAQALDALERVGIL-DKAYQRAS-TLSGGQQ  153 (258)
T ss_pred             HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCC---CHHHHHHHHHHHHHcCcH-HHHHHHhc-cCCcchh
Confidence             346899999999999999999987654211    1122322   244456778899999996 45556665 4999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+|||||+++|+++|.|||+|+|||.+.+.+++.|+++.+ +|.|||+..|+++++..+ |+||+-|++|+|+++|++
T Consensus       154 QRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y-~~Riigl~~G~ivfDg~~  232 (258)
T COG3638         154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKY-ADRIIGLKAGRIVFDGPA  232 (258)
T ss_pred             HHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHH-HhhheEecCCcEEEeCCh
Confidence            999999999999999999999999999999999999999975 489999999999999998 699999999999999998


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       233 ~e  234 (258)
T COG3638         233 SE  234 (258)
T ss_pred             hh
Confidence            64

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-54  Score=405.34  Aligned_cols=220  Identities=24%  Similarity=0.417  Sum_probs=198.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .+.++++||+++|+  +..+++|+||+|++||+++|+||||||||||||+|+|+  ..|++|+|.++|+++..+++..| 
T Consensus         3 ~~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf--e~p~~G~I~l~G~~i~~lpp~kR-   77 (352)
T COG3842           3 KPALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--EQPSSGEILLDGEDITDVPPEKR-   77 (352)
T ss_pred             CceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChhhc-
Confidence            45799999999997  47899999999999999999999999999999999999  68999999999999999988754 


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                        .+++|||+..+||.+|+.+|+.++.....      ....++..+++.++++.+++. ++.++++.+ |||||+|||||
T Consensus        78 --~ig~VFQ~YALFPHltV~~NVafGLk~~~------~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~q-LSGGQqQRVAL  147 (352)
T COG3842          78 --PIGMVFQSYALFPHMTVEENVAFGLKVRK------KLKKAEIKARVEEALELVGLE-GFADRKPHQ-LSGGQQQRVAL  147 (352)
T ss_pred             --ccceeecCcccCCCCcHHHHhhhhhhhcC------CCCHHHHHHHHHHHHHHcCch-hhhhhChhh-hChHHHHHHHH
Confidence              48899999999999999999988764211      112345667899999999997 688888875 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|+||||.+++..+ +|||+||++|+|.+.|+|+.
T Consensus       148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~m-sDrI~Vm~~G~I~Q~gtP~e  223 (352)
T COG3842         148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAM-SDRIAVMNDGRIEQVGTPEE  223 (352)
T ss_pred             HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhh-ccceEEccCCceeecCCHHH
Confidence            99999999999999999999999999999999999755 99999999999999887 79999999999999999864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-54  Score=381.34  Aligned_cols=209  Identities=25%  Similarity=0.382  Sum_probs=183.0

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+++++++++.|++  ..+|+|+||+|.+||+++|+||||||||||||+|+|+  .+|++|+|.++|+++..-.      
T Consensus         2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL--~~p~~G~V~~~g~~v~~p~------   71 (248)
T COG1116           2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL--EKPTSGEVLLDGRPVTGPG------   71 (248)
T ss_pred             ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCcccCCCC------
Confidence            46899999999975  7899999999999999999999999999999999998  6899999999999874322      


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|+||++.++|..|+.+|+.++.....       ....+..+++.++++.+|+. ++.++++.+ |||||||||+||
T Consensus        72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-------~~~~e~~~~a~~~L~~VgL~-~~~~~~P~q-LSGGMrQRVaiA  142 (248)
T COG1116          72 PDIGYVFQEDALLPWLTVLDNVALGLELRG-------KSKAEARERAKELLELVGLA-GFEDKYPHQ-LSGGMRQRVAIA  142 (248)
T ss_pred             CCEEEEeccCcccchhhHHhhheehhhccc-------cchHhHHHHHHHHHHHcCCc-chhhcCccc-cChHHHHHHHHH
Confidence            247899999999999999999987754321       12344456788999999996 688888875 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEE
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIK  304 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~  304 (325)
                      |||+.+|++||||||+++||..++..+.+.|.++. +.++||++||||++++-.+ +|||++|.+  |+|..
T Consensus       143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~L-sdRivvl~~~P~~i~~  213 (248)
T COG1116         143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYL-ADRVVVLSNRPGRIGE  213 (248)
T ss_pred             HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhh-hCEEEEecCCCcceee
Confidence            99999999999999999999999999999999975 4588999999999999887 799999998  55543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-53  Score=399.37  Aligned_cols=218  Identities=26%  Similarity=0.395  Sum_probs=197.2

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+|+++||++.|++.  .+++++||+|+.||+++|+||||||||||||+|+||  ..|++|+|.++|++++.+++..|  
T Consensus         2 ~~i~l~~v~K~yg~~--~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL--e~~~~G~I~i~g~~vt~l~P~~R--   75 (338)
T COG3839           2 AELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--EEPTSGEILIDGRDVTDLPPEKR--   75 (338)
T ss_pred             cEEEEeeeEEEcCCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChhHC--
Confidence            369999999999742  299999999999999999999999999999999998  68999999999999999988764  


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                       +++||||++.+||.+|+.+|+.++...+       .....+..+++.++.+.+++. +++++.+.+ ||||||||||||
T Consensus        76 -~iamVFQ~yALyPhmtV~~Niaf~Lk~~-------~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~-LSGGQrQRVAla  145 (338)
T COG3839          76 -GIAMVFQNYALYPHMTVYENIAFGLKLR-------GVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQ-LSGGQRQRVALA  145 (338)
T ss_pred             -CEEEEeCCccccCCCcHHHHhhhhhhhC-------CCchHHHHHHHHHHHHHcCCh-hHHhcCccc-CChhhHHHHHHH
Confidence             5899999999999999999998775432       123456678899999999996 789999875 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+++|+++|||||+|+||...+..+...|+++.++ |.|+|+||||..++..+ +|||++|++|+|.+.|++..
T Consensus       146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtl-adri~Vm~~G~i~Q~g~p~e  220 (338)
T COG3839         146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL-ADRIVVMNDGRIQQVGTPLE  220 (338)
T ss_pred             HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhh-CCEEEEEeCCeeeecCChHH
Confidence            9999999999999999999999999999999998765 88999999999999888 79999999999999998864

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.2e-53  Score=362.67  Aligned_cols=218  Identities=22%  Similarity=0.328  Sum_probs=192.6

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~  154 (325)
                      ||+++||++.|+++ +.+|+||||+|++||++-|+||||||||||+|+|++.  .+|++|+|.++|.++..++..+  .-
T Consensus         1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~--e~pt~G~i~~~~~dl~~l~~~~iP~L   77 (223)
T COG2884           1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE--ERPTRGKILVNGHDLSRLKGREIPFL   77 (223)
T ss_pred             CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh--hcCCCceEEECCeecccccccccchh
Confidence            68999999999875 7799999999999999999999999999999999997  6899999999999998876543  12


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..|++|||+..+++..|+.+|+.++....    +   ....++..++.+.|+.+|+. +..+..+. +|||||+|||+|
T Consensus        78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~----G---~~~~~i~~rV~~~L~~VgL~-~k~~~lP~-~LSGGEQQRvaI  148 (223)
T COG2884          78 RRQIGVVFQDFRLLPDRTVYENVALPLRVI----G---KPPREIRRRVSEVLDLVGLK-HKARALPS-QLSGGEQQRVAI  148 (223)
T ss_pred             hheeeeEeeeccccccchHhhhhhhhhhcc----C---CCHHHHHHHHHHHHHHhccc-hhhhcCcc-ccCchHHHHHHH
Confidence            345889999999999999999998775432    2   23566778899999999997 44555565 499999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      |||++++|++||.||||.+|||....+|++++.++...|+||||+|||.+++..+ ..|++.+++|+++.+..
T Consensus       149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~-~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM-RHRVLALEDGRLVRDES  220 (223)
T ss_pred             HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc-cCcEEEEeCCEEEeccc
Confidence            9999999999999999999999999999999999998899999999999999987 58899999999987643

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=2.6e-52  Score=425.34  Aligned_cols=277  Identities=22%  Similarity=0.333  Sum_probs=229.9

Q ss_pred             eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020520           27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE  106 (325)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge  106 (325)
                      -|+.|+.++.+++..|+....+..|+.++++.+++............-...++++||+|+|+..+..+|+|+||+|++||
T Consensus       421 ~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge  500 (709)
T COG2274         421 YFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGE  500 (709)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCC
Confidence            36789999999999999999999999999987766544332122223455799999999998765679999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      ++||+|+||||||||+|+|+|+  |.|++|+|++||.|+...+....++ .+++++|++.+|.+ |+.||+...      
T Consensus       501 ~vaIvG~SGsGKSTL~KLL~gl--y~p~~G~I~~dg~dl~~i~~~~lR~-~ig~V~Q~~~Lf~g-SI~eNi~l~------  570 (709)
T COG2274         501 KVAIVGRSGSGKSTLLKLLLGL--YKPQQGRILLDGVDLNDIDLASLRR-QVGYVLQDPFLFSG-SIRENIALG------  570 (709)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEeHHhcCHHHHHh-heeEEcccchhhcC-cHHHHHhcC------
Confidence            9999999999999999999998  8999999999999999998877654 58899999988875 777776543      


Q ss_pred             hcCCCCCChHHHH-----HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          187 KLGQPEIGPIEFY-----AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                         .++.+.++..     +.+.+.+..+.++.+..-..-+.+||||||||++|||||+++|+|||||||||+||+++++.
T Consensus       571 ---~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~  647 (709)
T COG2274         571 ---NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAI  647 (709)
T ss_pred             ---CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHH
Confidence               3333333333     33556677777765555555566799999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCeec
Q 020520          262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA  321 (325)
Q Consensus       262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~~  321 (325)
                      |.+.|.++. +|+|+|+|||++..+..  ||+|+||++|+|+++|+.+  ++++.+|+|+
T Consensus       648 I~~~L~~~~-~~~T~I~IaHRl~ti~~--adrIiVl~~Gkiv~~gs~~--ell~~~g~y~  702 (709)
T COG2274         648 ILQNLLQIL-QGRTVIIIAHRLSTIRS--ADRIIVLDQGKIVEQGSHE--ELLAQGGLYA  702 (709)
T ss_pred             HHHHHHHHh-cCCeEEEEEccchHhhh--ccEEEEccCCceeccCCHH--HHHHhcChHH
Confidence            999999986 46899999999988875  6999999999999999764  6677777653

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.9e-53  Score=371.53  Aligned_cols=229  Identities=26%  Similarity=0.443  Sum_probs=203.8

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .+++++++|+++|++  -.+++||||++++||+++||||||||||||+++|+|+  |+|++|+|.++|+++..+++.++.
T Consensus         2 ~~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~--~~P~~G~v~~~G~~it~l~p~~ia   77 (250)
T COG0411           2 TPLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF--YKPSSGTVIFRGRDITGLPPHRIA   77 (250)
T ss_pred             CceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc--ccCCCceEEECCcccCCCCHHHHH
Confidence            357999999999974  7899999999999999999999999999999999998  899999999999999999999988


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHh---hhcCCCC--CChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARR---RKLGQPE--IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      +.|++..||.+.+|+++|+.+|+..+.....   ..+..+.  ....+..+++.++|+.+|+. +..++..+. ||+||+
T Consensus        78 r~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~-LsyG~q  155 (250)
T COG0411          78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGN-LSYGQQ  155 (250)
T ss_pred             hccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhc-CChhHh
Confidence            8999999999999999999999987643221   0111111  12455667888999999996 677887765 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      +|+.|||||+.+|++|+||||.+||.+....++.++|+++.++ |.||++|.||++++..+ ||||+||+.|+++++|+|
T Consensus       156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l-~dri~Vl~~G~~IAeG~P  234 (250)
T COG0411         156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGL-ADRIVVLNYGEVIAEGTP  234 (250)
T ss_pred             HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhh-ccEEEeccCCcCcccCCH
Confidence            9999999999999999999999999999999999999999874 69999999999999998 699999999999999999


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       235 ~e  236 (250)
T COG0411         235 EE  236 (250)
T ss_pred             HH
Confidence            75

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.3e-52  Score=392.16  Aligned_cols=221  Identities=21%  Similarity=0.305  Sum_probs=191.1

Q ss_pred             cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-
Q 020520           77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER-  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~-  153 (325)
                      ||+++||+++|+++  .+++|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++..++.... 
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl--~~p~~G~I~i~G~~i~~~~~~~l~   78 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTSGSVIVDGQDLTTLSNSELT   78 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHH
Confidence            58999999999632  24799999999999999999999999999999999998  68999999999999987765432 


Q ss_pred             -hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          154 -SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       154 -~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                       .+..++|+||++.+++..|+.+++.+....    .+   ....+..+++.++++.+++. +..++.+.+ |||||||||
T Consensus        79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~----~~---~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~-LSgGqkQRV  149 (343)
T TIGR02314        79 KARRQIGMIFQHFNLLSSRTVFGNVALPLEL----DN---TPKDEIKRKVTELLALVGLG-DKHDSYPSN-LSGGQKQRV  149 (343)
T ss_pred             HHhcCEEEEECCccccccCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence             234699999999999989999998765321    11   12334456778899999996 567788765 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||++||+.+++.++++|+++.++ |.|||+||||++.+..+ ||+|++|++|++++.|+++
T Consensus       150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~-~d~v~vl~~G~iv~~g~~~  226 (343)
T TIGR02314       150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQGTVS  226 (343)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHH
Confidence            9999999999999999999999999999999999999765 89999999999999887 6999999999999999864

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-51  Score=369.16  Aligned_cols=220  Identities=26%  Similarity=0.421  Sum_probs=188.3

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC-CCHHHHh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE-MEPEERS  154 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~-~~~~~~~  154 (325)
                      ++++++|++++|+++ ..+|+++||+|++||+++|+|+||||||||+++++|+  ++|++|+|.++|.++.. .+....+
T Consensus         2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL--l~p~~G~v~~~g~~~~~~~~~~~~~   78 (235)
T COG1122           2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--LKPTSGEVLVDGLDTSSEKSLLELR   78 (235)
T ss_pred             ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc--CcCCCCEEEECCeeccchhhHHHhh
Confidence            478999999999865 6899999999999999999999999999999999998  78999999999998763 2233332


Q ss_pred             hccEEEeccCCcc-CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSPVE-IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ..++++||+|.. +..-|+.+.+.++..  +  .+   ...++...++.++++.+++. +++++.+.+ |||||||||+
T Consensus        79 -~~vG~VfQnpd~q~~~~tV~~evafg~~--n--~g---~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~-LSGGqkqRva  148 (235)
T COG1122          79 -QKVGLVFQNPDDQLFGPTVEDEVAFGLE--N--LG---LPREEIEERVAEALELVGLE-ELLDRPPFN-LSGGQKQRVA  148 (235)
T ss_pred             -cceEEEEECcccccccCcHHHHHhhchh--h--cC---CCHHHHHHHHHHHHHHcCch-hhccCCccc-cCCcceeeHH
Confidence             348899999953 334467666655432  1  12   23456778899999999996 678888875 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||.+|+.+|++||||||||+||+.+++.++++++++.++ |+|||++|||++++..+ ||++++|++|+++.+|++.
T Consensus       149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~-ad~v~vl~~G~i~~~g~p~  224 (235)
T COG1122         149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEY-ADRVVVLDDGKILADGDPA  224 (235)
T ss_pred             hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhh-CCEEEEEECCEEeecCCHH
Confidence            999999999999999999999999999999999999877 68999999999999987 7999999999999999864

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=6.9e-51  Score=369.36  Aligned_cols=240  Identities=59%  Similarity=0.992  Sum_probs=192.2

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+..++|++|+|.++|+++...+...+.+.+
T Consensus         1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   78 (243)
T TIGR01978         1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG   78 (243)
T ss_pred             CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence            478999999963  579999999999999999999999999999999999732368999999999998776654443446


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++.+++.+++...................+...++.+.++.+++.....++.+...|||||||||+||||
T Consensus        79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a  158 (243)
T TIGR01978        79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM  158 (243)
T ss_pred             eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence            88999999999888998887654322110000001112233456778899999964455666643499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhC
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG  317 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~  317 (325)
                      |+.+|++|||||||++||+.+++.+.++|++++++|.|||+||||++++..++||++++|++|++++.|+++.......+
T Consensus       159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~  238 (243)
T TIGR01978       159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELEEK  238 (243)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhcccccc
Confidence            99999999999999999999999999999999767889999999999998764699999999999999987654444444


Q ss_pred             Ce
Q 020520          318 GY  319 (325)
Q Consensus       318 ~~  319 (325)
                      +|
T Consensus       239 ~~  240 (243)
T TIGR01978       239 GY  240 (243)
T ss_pred             Cc
Confidence            43

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=6.9e-51  Score=381.80  Aligned_cols=220  Identities=23%  Similarity=0.321  Sum_probs=189.3

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++||+++|++  +.+|+|+||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|.++.......  
T Consensus         5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl--~~p~~G~v~i~G~~~~~~~~~~--   78 (306)
T PRK13537          5 VAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL--THPDAGSISLCGEPVPSRARHA--   78 (306)
T ss_pred             CceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEecccchHHH--
Confidence            468999999999964  6799999999999999999999999999999999998  6899999999999986543322  


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|+||++.+++.+|+.+++.+....    .+   ....+...++.++++.+++. +..++.+.. ||||||||++|
T Consensus        79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~l  149 (306)
T PRK13537         79 RQRVGVVPQFDNLDPDFTVRENLLVFGRY----FG---LSAAAARALVPPLLEFAKLE-NKADAKVGE-LSGGMKRRLTL  149 (306)
T ss_pred             HhcEEEEeccCcCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hHhcCchhh-CCHHHHHHHHH
Confidence            34588999999999989999988653221    11   12233445677889999996 567777764 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+++|++|||||||+|||+.+++.++++|++++++|+|||++||+++++..+ ||+|++|++|++++.|+++.
T Consensus       150 a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~-~d~i~il~~G~i~~~g~~~~  224 (306)
T PRK13537        150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-CDRLCVIEEGRKIAEGAPHA  224 (306)
T ss_pred             HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999999999999999999977789999999999999888 69999999999999998764

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.2e-52  Score=374.87  Aligned_cols=219  Identities=19%  Similarity=0.309  Sum_probs=192.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE---eCCCCCHHHH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE---NLLEMEPEER  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~---~i~~~~~~~~  153 (325)
                      +|+++|+++.|+.  ..+++|||++|+.||++||+||||||||||||+|+||  ..|++|+|.++|+   |.+.....  
T Consensus         2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL--e~p~~G~I~~~~~~l~D~~~~~~~--   75 (345)
T COG1118           2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL--ETPDAGRIRLNGRVLFDVSNLAVR--   75 (345)
T ss_pred             ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc--CCCCCceEEECCEeccchhccchh--
Confidence            5889999999974  6799999999999999999999999999999999998  6899999999999   55443332  


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ...||++||++.+|+.+|+.+|+.++...+     .....+.+...++.++|+.+.++ .+.++++.+ ||||||||||
T Consensus        76 -~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-----~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~Q-LSGGQrQRVA  147 (345)
T COG1118          76 -DRKVGFVFQHYALFPHMTVADNIAFGLKVR-----KERPSEAEIRARVEELLRLVQLE-GLADRYPAQ-LSGGQRQRVA  147 (345)
T ss_pred             -hcceeEEEechhhcccchHHhhhhhccccc-----ccCCChhhHHHHHHHHHHHhccc-chhhcCchh-cChHHHHHHH
Confidence             235899999999999999999998876433     11123456677889999999996 678888875 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+.+|++||||||+++||...+.++..-|+++.++ |.|.|+||||.+++..+ +|||++|++|+|...|+++.
T Consensus       148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~l-adrvvvl~~G~Ieqvg~p~e  224 (345)
T COG1118         148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL-ADRVVVLNQGRIEQVGPPDE  224 (345)
T ss_pred             HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhh-cceEEEecCCeeeeeCCHHH
Confidence            999999999999999999999999999999999999876 89999999999999998 69999999999999998864

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-51  Score=388.19  Aligned_cols=218  Identities=23%  Similarity=0.339  Sum_probs=191.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...++..   .
T Consensus         3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl--~~p~~G~I~~~g~~i~~~~~~~---r   76 (356)
T PRK11650          3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL--ERITSGEIWIGGRVVNELEPAD---R   76 (356)
T ss_pred             EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC--CCCCceEEEECCEECCCCCHHH---C
Confidence            6999999999942 36799999999999999999999999999999999998  6799999999999998766543   3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+++.+|+.+.....       .....+...++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-------~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGq~QRvalAR  147 (356)
T PRK11650         77 DIAMVFQNYALYPHMSVRENMAYGLKIR-------GMPKAEIEERVAEAARILELE-PLLDRKPRE-LSGGQRQRVAMGR  147 (356)
T ss_pred             CEEEEeCCccccCCCCHHHHHHhHHhhc-------CCCHHHHHHHHHHHHHHcCCh-hHhhCChhh-CCHHHHHHHHHHH
Confidence            6899999999999999999987654211       112334456678899999996 678888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++.
T Consensus       148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l-~D~i~vl~~G~i~~~g~~~~  221 (356)
T PRK11650        148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTL-ADRVVVMNGGVAEQIGTPVE  221 (356)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCEEEEECCHHH
Confidence            999999999999999999999999999999998765 89999999999999887 69999999999999998753

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-50  Score=385.79  Aligned_cols=219  Identities=21%  Similarity=0.368  Sum_probs=192.3

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...++..  
T Consensus         4 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~~~g~~i~~~~~~~--   77 (351)
T PRK11432          4 KNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL--EKPTEGQIFIDGEDVTHRSIQQ--   77 (351)
T ss_pred             CcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC--CCCCceEEEECCEECCCCCHHH--
Confidence            458999999999963  6799999999999999999999999999999999998  6899999999999998765432  


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                       ..++|+||++.+|+.+|+.+|+.+.....    +   ....+...++.++++.+++. ++.++.+.+ |||||||||+|
T Consensus        78 -r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~----~---~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~-LSgGq~QRVaL  147 (351)
T PRK11432         78 -RDICMVFQSYALFPHMSLGENVGYGLKML----G---VPKEERKQRVKEALELVDLA-GFEDRYVDQ-ISGGQQQRVAL  147 (351)
T ss_pred             -CCEEEEeCCcccCCCCCHHHHHHHHHhHc----C---CCHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHH
Confidence             35899999999999999999987764321    1   12344456788899999996 577888765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||++||+..++++.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++.
T Consensus       148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l-aD~i~vm~~G~i~~~g~~~~  223 (351)
T PRK11432        148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV-SDTVIVMNKGKIMQIGSPQE  223 (351)
T ss_pred             HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999765 89999999999999887 69999999999999998763

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.7e-50  Score=365.51  Aligned_cols=219  Identities=27%  Similarity=0.395  Sum_probs=184.5

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH--HHhh
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE--ERSL  155 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~--~~~~  155 (325)
                      |+++||++.|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+..  ...+
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~~~   76 (235)
T cd03261           1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL--LRPDSGEVLIDGEDISGLSEAELYRLR   76 (235)
T ss_pred             CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccChhhHHHHh
Confidence            478999999963  5799999999999999999999999999999999998  679999999999998765432  1123


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|++|++.+++.+++.+++.......    .  .....+...++.++++.+++. +..++.+.+ |||||||||+||
T Consensus        77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~ia  148 (235)
T cd03261          77 RRMGMLFQSGALFDSLTVFENVAFPLREH----T--RLSEEEIREIVLEKLEAVGLR-GAEDLYPAE-LSGGMKKRVALA  148 (235)
T ss_pred             cceEEEccCcccCCCCcHHHHHHHHHhhc----c--CCCHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHHH
Confidence            46889999999888889998876542210    0  112233345677789999995 456777764 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+.+|++|||||||+|||+.+++.+++.|+++.++ |+|||+||||++++..+ ||++++|++|++++.|+++
T Consensus       149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~-~d~v~~l~~G~i~~~g~~~  222 (235)
T cd03261         149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAI-ADRIAVLYDGKIVAEGTPE  222 (235)
T ss_pred             HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh-cCEEEEEECCeEEEecCHH
Confidence            9999999999999999999999999999999998764 88999999999998877 6999999999999998765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1e-50  Score=362.31  Aligned_cols=214  Identities=22%  Similarity=0.343  Sum_probs=179.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~  154 (325)
                      ||+++|++++|+++.+.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...  ..
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI--EKPTRGKIRFNGQDLTRLRGREIPFL   78 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEehhhcChhHHHHH
Confidence            5899999999964334699999999999999999999999999999999998  6799999999999886554322  11


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|++|++.+++..++.+++......    .+   ....+...++.++++.+++. +..++.+.+ |||||||||+|
T Consensus        79 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~l  149 (216)
T TIGR00960        79 RRHIGMVFQDHRLLSDRTVYDNVAFPLRI----IG---VPPRDANERVSAALEKVGLE-GKAHALPMQ-LSGGEQQRVAI  149 (216)
T ss_pred             HHhceEEecCccccccccHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHHHHH
Confidence            23588999999888888999887654321    11   11223345677889999996 566777764 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      ||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||+||||++++..+ ||++++|++|++
T Consensus       150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~-~d~i~~l~~G~i  216 (216)
T TIGR00960       150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY-RHRTLTLSRGRL  216 (216)
T ss_pred             HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEeCCcC
Confidence            9999999999999999999999999999999999976688999999999999877 699999999975

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-51  Score=353.15  Aligned_cols=219  Identities=22%  Similarity=0.339  Sum_probs=193.2

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||++.+++++|+. ...+++||||+++.||++||+|||||||||+||+|+++  +.|++|.|+++|.+....+...+++.
T Consensus         1 Ml~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl--L~P~~G~v~idg~d~~~~p~~vrr~I   77 (245)
T COG4555           1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL--LIPDSGKVTIDGVDTVRDPSFVRRKI   77 (245)
T ss_pred             CeeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh--ccCCCceEEEeecccccChHHHhhhc
Confidence            6899999999985 34599999999999999999999999999999999998  67999999999999888776666654


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                        +.++-...+|..+|+.+++.+.....       .....+..+++.++.+.+++. +.+++++++ ||.||||||+|||
T Consensus        78 --GVl~~e~glY~RlT~rEnl~~Fa~L~-------~l~~~~~kari~~l~k~l~l~-~~~~rRv~~-~S~G~kqkV~iAR  146 (245)
T COG4555          78 --GVLFGERGLYARLTARENLKYFARLN-------GLSRKEIKARIAELSKRLQLL-EYLDRRVGE-FSTGMKQKVAIAR  146 (245)
T ss_pred             --ceecCCcChhhhhhHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHhChH-HHHHHHHhh-hchhhHHHHHHHH
Confidence              45565556788899999987654332       123455677888999999996 789999986 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+++|++++|||||+|||..+.+.+.+.+++++++|++||++||++++++.+ ||+|+++++|+++..|+.+.
T Consensus       147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eveal-CDrvivlh~Gevv~~gs~~~  219 (245)
T COG4555         147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEAL-CDRVIVLHKGEVVLEGSIEA  219 (245)
T ss_pred             HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHh-hheEEEEecCcEEEcCCHHH
Confidence            99999999999999999999999999999999998899999999999999988 69999999999999998764

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-50  Score=385.28  Aligned_cols=217  Identities=22%  Similarity=0.350  Sum_probs=191.5

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...++..   
T Consensus         3 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl--~~p~~G~I~i~g~~~~~~~~~~---   75 (353)
T TIGR03265         3 PYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL--ERQTAGTIYQGGRDITRLPPQK---   75 (353)
T ss_pred             cEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--CCCCceEEEECCEECCCCCHHH---
Confidence            47999999999964  6799999999999999999999999999999999998  6799999999999997766542   


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|+||++.+|+.+++.+|+.+.....       .....+...++.++++.+++. +++++.+.+ |||||||||+||
T Consensus        76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-------~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~-LSgGq~QRvaLA  146 (353)
T TIGR03265        76 RDYGIVFQSYALFPNLTVADNIAYGLKNR-------GMGRAEVAERVAELLDLVGLP-GSERKYPGQ-LSGGQQQRVALA  146 (353)
T ss_pred             CCEEEEeCCcccCCCCcHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHcCCC-chhhCChhh-CCHHHHHHHHHH
Confidence            35899999999999999999987764321       112334456788899999996 678888865 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++
T Consensus       147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l-~d~i~vl~~G~i~~~g~~~  220 (353)
T TIGR03265       147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSM-ADRIVVMNHGVIEQVGTPQ  220 (353)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEEcCHH
Confidence            9999999999999999999999999999999998765 88999999999999887 6999999999999999875

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.8e-50  Score=376.29  Aligned_cols=220  Identities=26%  Similarity=0.360  Sum_probs=189.2

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ..++++||+++|++ ++.+|+||||+|++||++||+||||||||||+|+|+|+  ..|++|+|.++|.+........+  
T Consensus         3 ~~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl--~~p~~G~i~i~G~~~~~~~~~~~--   77 (293)
T COG1131           3 EVIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL--LKPTSGEILVLGYDVVKEPAKVR--   77 (293)
T ss_pred             ceeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEEcCEeCccCHHHHH--
Confidence            36889999999972 36899999999999999999999999999999999998  68999999999998765422222  


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|++|++.+++.+|+.+++.+......    ..   .....+++.++++.+++.. ..++.+. +||+|||||++||
T Consensus        78 ~~igy~~~~~~~~~~lT~~e~l~~~~~l~~----~~---~~~~~~~~~~~l~~~~L~~-~~~~~~~-~lS~G~kqrl~ia  148 (293)
T COG1131          78 RRIGYVPQEPSLYPELTVRENLEFFARLYG----LS---KEEAEERIEELLELFGLED-KANKKVR-TLSGGMKQRLSIA  148 (293)
T ss_pred             hheEEEccCCCCCccccHHHHHHHHHHHhC----CC---hhHHHHHHHHHHHHcCCch-hhCcchh-hcCHHHHHHHHHH
Confidence            348899999999999999999887654321    11   1233456888999999974 3456665 4999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC-cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK-NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +||+++|++|||||||+|||+.++..++++|++++++| .||+++||.++.+..+ ||+|++|++|++++.|+++.
T Consensus       149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~-~d~v~il~~G~~~~~g~~~~  223 (293)
T COG1131         149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL-CDRVIILNDGKIIAEGTPEE  223 (293)
T ss_pred             HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh-CCEEEEEeCCEEEEeCCHHH
Confidence            99999999999999999999999999999999999876 7999999999999998 79999999999999997654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=6e-50  Score=378.83  Aligned_cols=227  Identities=26%  Similarity=0.409  Sum_probs=191.2

Q ss_pred             CCCcEEEEEEEEEECCC-----------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC
Q 020520           74 SQPLLQVTGLTAVIAES-----------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG  142 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~-----------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g  142 (325)
                      .+++|+++||+++|+..           ...+++|+||+|++||++||+|+||||||||+++|+|+  .+|++|+|.++|
T Consensus         5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl--~~p~~G~I~~~G   82 (331)
T PRK15079          5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL--VKATDGEVAWLG   82 (331)
T ss_pred             CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--CCCCCcEEEECC
Confidence            45789999999999631           24699999999999999999999999999999999998  678999999999


Q ss_pred             EeCCCCCHHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccc
Q 020520          143 ENLLEMEPEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR  218 (325)
Q Consensus       143 ~~i~~~~~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  218 (325)
                      +++...+....  .+..++|+||++  .+++.+++.+++........     ......+...++.++++.+++..+.+++
T Consensus        83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~~vgl~~~~~~~  157 (331)
T PRK15079         83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-----PKLSRQEVKDRVKAMMLKVGLLPNLINR  157 (331)
T ss_pred             EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHcCCChHHhcC
Confidence            99987765431  224699999998  47778899888765432110     0122344456677889999995456778


Q ss_pred             cCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          219 NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       219 ~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      .+.+ |||||+|||+|||||+.+|++||+||||++||+.++.+++++|+++.++ |.|||+||||++++..+ ||+|++|
T Consensus       158 ~p~~-LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~-~dri~vl  235 (331)
T PRK15079        158 YPHE-FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHI-SDRVLVM  235 (331)
T ss_pred             Cccc-CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            8775 9999999999999999999999999999999999999999999999764 89999999999999887 6999999


Q ss_pred             eCCEEEEEcCcc
Q 020520          298 EDGRIIKTGDAS  309 (325)
Q Consensus       298 ~~G~iv~~g~~~  309 (325)
                      ++|+|++.|+.+
T Consensus       236 ~~G~ive~g~~~  247 (331)
T PRK15079        236 YLGHAVELGTYD  247 (331)
T ss_pred             ECCEEEEEcCHH
Confidence            999999999764

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-50  Score=350.46  Aligned_cols=242  Identities=57%  Similarity=0.919  Sum_probs=221.8

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+|+++||+++..+ .+.+|++|||+|++||+++|+||||||||||.++|+|.+.|.+++|+|.++|+++..+++.+|++
T Consensus         2 ~~L~I~dLhv~v~~-~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr   80 (251)
T COG0396           2 MMLEIKDLHVEVEG-KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR   80 (251)
T ss_pred             ceeEEeeeEEEecC-chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence            47999999999863 25899999999999999999999999999999999999889999999999999999999999999


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      .|+.+.||.|.-+++.++.+++..+++......+   . ..++...+.+.++.+++.+.+++|.+..++|||||+|..|+
T Consensus        81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~---~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Eil  156 (251)
T COG0396          81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARG---I-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEIL  156 (251)
T ss_pred             cCCEEeecCCccCCCeeHHHHHHHHHHhhhcccc---c-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHH
Confidence            9999999999999999999999888765432211   2 34566778889999999888999999999999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE  315 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~  315 (325)
                      .+++.+|++.|||||-||||..+-+.+.+.+++++.+|.++++|||..+++..+..|++.||.+|+|+..|.++..+.++
T Consensus       157 Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~el~~~le  236 (251)
T COG0396         157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELE  236 (251)
T ss_pred             HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHHHHHHHH
Confidence            99999999999999999999999999999999999889999999999999998888999999999999999998888899


Q ss_pred             hCCeecc
Q 020520          316 EGGYKAI  322 (325)
Q Consensus       316 ~~~~~~~  322 (325)
                      +.||..+
T Consensus       237 ~~gy~~~  243 (251)
T COG0396         237 EKGYDWL  243 (251)
T ss_pred             HhchHHh
Confidence            9998654

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=3.8e-50  Score=385.31  Aligned_cols=221  Identities=21%  Similarity=0.396  Sum_probs=192.8

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      ...++|+++|++++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...++..
T Consensus        10 ~~~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl--~~p~~G~I~~~g~~i~~~~~~~   85 (375)
T PRK09452         10 SLSPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF--ETPDSGRIMLDGQDITHVPAEN   85 (375)
T ss_pred             cCCceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHH
Confidence            34668999999999964  5799999999999999999999999999999999998  6799999999999997766543


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                         ..++|+||++.+|+.+++.+|+.+.....    +   ....+...++.++++.+++. +++++.+.+ |||||||||
T Consensus        86 ---r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~-LSgGq~QRV  153 (375)
T PRK09452         86 ---RHVNTVFQSYALFPHMTVFENVAFGLRMQ----K---TPAAEITPRVMEALRMVQLE-EFAQRKPHQ-LSGGQQQRV  153 (375)
T ss_pred             ---CCEEEEecCcccCCCCCHHHHHHHHHhhc----C---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence               35899999999999999999987654311    1   12234445678889999996 678888865 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +|||||+.+|++|||||||++||...++.+.+.|+++.++ |.|+|+||||++++..+ +|+|++|++|++++.|+++.
T Consensus       154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~l-aDri~vl~~G~i~~~g~~~~  231 (375)
T PRK09452        154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTM-SDRIVVMRDGRIEQDGTPRE  231 (375)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999999765 89999999999998887 69999999999999998753

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=6.5e-50  Score=379.69  Aligned_cols=221  Identities=22%  Similarity=0.317  Sum_probs=188.8

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++||+++|++  +.+|+|+||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|+++.....  .
T Consensus        38 ~~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl--~~p~~G~i~i~G~~~~~~~~--~  111 (340)
T PRK13536         38 STVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM--TSPDAGKITVLGVPVPARAR--L  111 (340)
T ss_pred             CceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCceEEEECCEECCcchH--H
Confidence            3468999999999964  5799999999999999999999999999999999998  68999999999999865432  2


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      .+..++++||++.+++.+++.+++.+....    .+   ....+....+.++++.+++. +..++.+.. |||||||||+
T Consensus       112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~-LS~G~kqrv~  182 (340)
T PRK13536        112 ARARIGVVPQFDNLDLEFTVRENLLVFGRY----FG---MSTREIEAVIPSLLEFARLE-SKADARVSD-LSGGMKRRLT  182 (340)
T ss_pred             HhccEEEEeCCccCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhCCChhh-CCHHHHHHHH
Confidence            234689999999998889999987653211    11   11223344566788999996 567777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+||+++|++|||||||+|||+.+++.++++|++++++|+|||++||+++++..+ ||+|++|++|++++.|+++.
T Consensus       183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~-~d~i~il~~G~i~~~g~~~~  258 (340)
T PRK13536        183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-CDRLCVLEAGRKIAEGRPHA  258 (340)
T ss_pred             HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999977789999999999999988 69999999999999998764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-50  Score=380.05  Aligned_cols=221  Identities=22%  Similarity=0.354  Sum_probs=188.5

Q ss_pred             cEEEEEEEEEECC--CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-
Q 020520           77 LLQVTGLTAVIAE--SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER-  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~--~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~-  153 (325)
                      ||+++||+++|+.  .++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...+ 
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl--~~p~~G~I~~~g~~i~~~~~~~~~   78 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL--ERPTSGRVLVDGQDLTALSEKELR   78 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCcCCHHHHH
Confidence            5899999999972  135799999999999999999999999999999999998  67999999999999877664432 


Q ss_pred             -hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          154 -SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       154 -~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                       .+..++|+||++.+++.+++.+++.+....    .+   ....+...++.++++.+++. +..++.+.+ |||||||||
T Consensus        79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGq~qRv  149 (343)
T PRK11153         79 KARRQIGMIFQHFNLLSSRTVFDNVALPLEL----AG---TPKAEIKARVTELLELVGLS-DKADRYPAQ-LSGGQKQRV  149 (343)
T ss_pred             HHhcCEEEEeCCCccCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence             234689999999988889999988664321    11   12233445677889999996 567777765 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||+|||+.+++.++++|+++.++ |+|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~-~d~v~~l~~G~i~~~g~~~  226 (343)
T PRK11153        150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRI-CDRVAVIDAGRLVEQGTVS  226 (343)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHH
Confidence            9999999999999999999999999999999999999754 88999999999999887 6999999999999998764

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.5e-51  Score=352.31  Aligned_cols=223  Identities=23%  Similarity=0.327  Sum_probs=199.7

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|.++||.|+|++  ++++++|||+|++||++||+|||||||||.+.++.|+  .+|++|+|.++|.+++.++...|++
T Consensus         3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl--v~~d~G~i~ld~~diT~lPm~~RAr   78 (243)
T COG1137           3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL--VRPDSGKILLDDEDITKLPMHKRAR   78 (243)
T ss_pred             cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE--EecCCceEEECCcccccCChHHHhh
Confidence            47899999999964  7899999999999999999999999999999999998  7899999999999999999999999


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      .|++|.||++..|..+|+.+|+.........     +....+...++.++|+.|.+. +..+.+.. +||||||+|+.||
T Consensus        79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-----d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~-sLSGGERRR~EIA  151 (243)
T COG1137          79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREK-----DLKKAERKEELDALLEEFHIT-HLRDSKAY-SLSGGERRRVEIA  151 (243)
T ss_pred             cCcccccccchHhhcCcHHHHHHHHHhhhhc-----chhHHHHHHHHHHHHHHhchH-HHhcCccc-ccccchHHHHHHH
Confidence            9999999999999999999999877654321     111233445677899999996 56666655 5999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+.+|+++|||||+||+||.+...|.++++.|+..|..|+++-|+.++...+ |||.+++.+|++.++|+++.
T Consensus       152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i-~dRaYIi~~G~vla~G~p~e  225 (243)
T COG1137         152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDI-CDRAYIISDGKVLAEGSPEE  225 (243)
T ss_pred             HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhh-hheEEEEecCeEEecCCHHH
Confidence            999999999999999999999999999999999998899999999999988888 69999999999999999863

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=7.3e-50  Score=381.97  Aligned_cols=217  Identities=22%  Similarity=0.361  Sum_probs=190.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc--cEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE--GSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~--G~I~~~g~~i~~~~~~~~~  154 (325)
                      .|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++  |+|.++|+++...++..  
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~~~G~i~~~g~~~~~~~~~~--   78 (362)
T TIGR03258         5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF--VKAAGLTGRIAIADRDLTHAPPHK--   78 (362)
T ss_pred             EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCCEEEEECCEECCCCCHHH--
Confidence            5899999999964  5799999999999999999999999999999999998  67999  99999999987665432  


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                       ..++|+||++.+|+.+|+.+|+.+.....    +   ....+...++.++++.+++. ++.++.+.+ |||||||||+|
T Consensus        79 -r~ig~vfQ~~~l~p~~tv~enl~~~l~~~----~---~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~-LSgGq~QRvaL  148 (362)
T TIGR03258        79 -RGLALLFQNYALFPHLKVEDNVAFGLRAQ----K---MPKADIAERVADALKLVGLG-DAAAHLPAQ-LSGGMQQRIAI  148 (362)
T ss_pred             -CCEEEEECCcccCCCCcHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHhcCCC-chhhCChhh-CCHHHHHHHHH
Confidence             35899999999999999999987764321    1   12334456688899999996 678888875 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC--CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP--KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||++||+..++++.+.|+++.++  |.|+|+||||++++..+ +|+|++|++|++++.|+++.
T Consensus       149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l-~dri~vl~~G~i~~~g~~~~  225 (362)
T TIGR03258       149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTL-ADKAGIMKDGRLAAHGEPQA  225 (362)
T ss_pred             HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999765  78999999999999887 69999999999999998753

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1.7e-49  Score=362.35  Aligned_cols=243  Identities=58%  Similarity=1.041  Sum_probs=194.0

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||++.|++  +.+|+|+||+|++||++||+|+||||||||+++|+|+..++|++|+|.++|.++...+...+.
T Consensus         5 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (252)
T CHL00131          5 KPILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA   82 (252)
T ss_pred             CceEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence            458999999999963  579999999999999999999999999999999999732468999999999998776654444


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ..++++++|++.+++..++.+++...+...............+....+.++++.+++.....++.+.+.|||||+|||+|
T Consensus        83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l  162 (252)
T CHL00131         83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI  162 (252)
T ss_pred             eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence            44688899999888888888876554321100000111112233355677889999853355666653499999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVL  314 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~  314 (325)
                      ||||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+.+|++++|++|++++.|+++....+
T Consensus       163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  242 (252)
T CHL00131        163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKEL  242 (252)
T ss_pred             HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhhhhh
Confidence            99999999999999999999999999999999998766889999999999887654699999999999999988755545


Q ss_pred             HhCCe
Q 020520          315 EEGGY  319 (325)
Q Consensus       315 ~~~~~  319 (325)
                      +..+|
T Consensus       243 ~~~~~  247 (252)
T CHL00131        243 EKKGY  247 (252)
T ss_pred             cccCc
Confidence            54444

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-50  Score=351.96  Aligned_cols=221  Identities=28%  Similarity=0.412  Sum_probs=192.3

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++||+..|+.  .++|++|||++++||+++|+|+||+|||||+|+|+|+  .++.+|+|.|+|+|+...++.++.+
T Consensus         2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl--~~~~~G~I~~~G~dit~~p~~~r~r   77 (237)
T COG0410           2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--VRPRSGRIIFDGEDITGLPPHERAR   77 (237)
T ss_pred             CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeeEEECCeecCCCCHHHHHh
Confidence            58999999999975  6899999999999999999999999999999999998  6788999999999999999999999


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      .+++||||....|+.+|+.||+..+.......        ......++++.+.|..-.+..++..+. |||||+|.++||
T Consensus        78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~--------~~~~~~~e~v~~lFP~Lker~~~~aG~-LSGGEQQMLAia  148 (237)
T COG0410          78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDK--------EAQERDLEEVYELFPRLKERRNQRAGT-LSGGEQQMLAIA  148 (237)
T ss_pred             CCeEeCcccccchhhCcHHHHHhhhhhccccc--------ccccccHHHHHHHChhHHHHhcCcccC-CChHHHHHHHHH
Confidence            99999999999999999999998764322110        000111445556665433556666664 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+.+|++|+|||||.||-|.-.++|.+.|++++++ |.||++|.++..++..+ +||.+||++|+|+.+|+.+.
T Consensus       149 RALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~i-aDr~yvle~Griv~~G~~~e  223 (237)
T COG0410         149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEI-ADRGYVLENGRIVLSGTAAE  223 (237)
T ss_pred             HHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHh-hCEEEEEeCCEEEEecCHHH
Confidence            9999999999999999999999999999999999865 78999999999999988 79999999999999998764

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.1e-49  Score=360.22  Aligned_cols=224  Identities=28%  Similarity=0.447  Sum_probs=186.2

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++||+++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+...+.+.+
T Consensus         1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (236)
T cd03219           1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--LRPTSGSVLFDGEDITGLPPHEIARLG   76 (236)
T ss_pred             CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCceEEECCEECCCCCHHHHHhcC
Confidence            478999999963  5799999999999999999999999999999999998  678999999999998776654433356


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCC----CCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP----EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      ++|++|++.+++.+++.+++......... ....    .....+....+.++++.+++. +..++.+.+ |||||||||+
T Consensus        77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~  153 (236)
T cd03219          77 IGRTFQIPRLFPELTVLENVMVAAQARTG-SGLLLARARREEREARERAEELLERVGLA-DLADRPAGE-LSYGQQRRLE  153 (236)
T ss_pred             EEEEecccccccCCCHHHHHHHHHhhccc-cccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhh-CCHHHHHHHH
Confidence            89999999999889999988654321100 0000    001223345677889999996 556777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+++.|++++++|+|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  228 (236)
T cd03219         154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSL-ADRVTVLDQGRVIAEGTPD  228 (236)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEeCCEEEeecCHH
Confidence            99999999999999999999999999999999999876788999999999999887 6999999999999988765

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=1.2e-49  Score=379.64  Aligned_cols=221  Identities=18%  Similarity=0.314  Sum_probs=189.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+..   +.
T Consensus         2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~i~g~~i~~~~~~---~r   74 (353)
T PRK10851          2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL--EHQTSGHIRFHGTDVSRLHAR---DR   74 (353)
T ss_pred             EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHH---HC
Confidence            4899999999964  5799999999999999999999999999999999998  689999999999998765442   23


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+++.+|+.+......   ........+...++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LSgGq~QRvalAr  149 (353)
T PRK10851         75 KVGFVFQHYALFRHMTVFDNIAFGLTVLP---RRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQ-LSGGQKQRVALAR  149 (353)
T ss_pred             CEEEEecCcccCCCCcHHHHHHhhhhhcc---cccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHHHHHH
Confidence            58999999999999999999876542110   000112334456788899999996 677888865 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus       150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~-~Dri~vl~~G~i~~~g~~~~  223 (353)
T PRK10851        150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV-ADRVVVMSQGNIEQAGTPDQ  223 (353)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999999765 88999999999999887 69999999999999998753

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=7.9e-50  Score=355.84  Aligned_cols=212  Identities=25%  Similarity=0.405  Sum_probs=179.1

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+..   +..
T Consensus         1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~---~~~   73 (213)
T cd03259           1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL--ERPDSGEILIDGRDVTGVPPE---RRN   73 (213)
T ss_pred             CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcCcCchh---hcc
Confidence            478999999964  5799999999999999999999999999999999998  679999999999988654321   235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++..++.+++......    .+   ....+....+.++++.+++. +..++.+.+ ||||||||++||||
T Consensus        74 i~~v~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrl~la~a  144 (213)
T cd03259          74 IGMVFQDYALFPHLTVAENIAFGLKL----RG---VPKAEIRARVRELLELVGLE-GLLNRYPHE-LSGGQQQRVALARA  144 (213)
T ss_pred             EEEEcCchhhccCCcHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hhhhcChhh-CCHHHHHHHHHHHH
Confidence            88999999888888998887654321    11   11223334567789999996 556777664 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+.+|++|||||||+|||+.+++.+++.|+++++ .|.|||++|||++++..+ ||++++|++|++++.|
T Consensus       145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~v~~l~~G~i~~~g  213 (213)
T cd03259         145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALAL-ADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh-cCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999875 488999999999998887 6999999999998754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.4e-49  Score=358.61  Aligned_cols=218  Identities=23%  Similarity=0.350  Sum_probs=184.8

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...+...+.+..
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~   76 (232)
T cd03218           1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--VKPDSGKILLDGQDITKLPMHKRARLG   76 (232)
T ss_pred             CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccCCHhHHHhcc
Confidence            478999999963  5799999999999999999999999999999999998  679999999999988765544433346


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++.+++.+++......    .+   ....+....+.++++.+++. +..++.+. .||||||||++||||
T Consensus        77 i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~la~a  147 (232)
T cd03218          77 IGYLPQEASIFRKLTVEENILAVLEI----RG---LSKKEREEKLEELLEEFHIT-HLRKSKAS-SLSGGERRRVEIARA  147 (232)
T ss_pred             EEEecCCccccccCcHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChh-hCCHHHHHHHHHHHH
Confidence            88999999888888999887654321    11   11223334567788999986 55677765 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+.+|++|||||||+|||+.+++.+.++|+++.+++.|||++|||++.+..+ ||++++|++|++++.|+.+
T Consensus       148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  218 (232)
T cd03218         148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSI-TDRAYIIYEGKVLAEGTPE  218 (232)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCeEEEEeCHH
Confidence            9999999999999999999999999999999876788999999999988887 6999999999999988765

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-49  Score=387.33  Aligned_cols=268  Identities=24%  Similarity=0.384  Sum_probs=209.1

Q ss_pred             chHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCC--CCCCCC--cEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020520           31 PALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQ--DEKSQP--LLQVTGLTAVIAESKQEILKGVNLLVNEGE  106 (325)
Q Consensus        31 ~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~--~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge  106 (325)
                      =..|+|.+++.||.+..+....+.+....+.+........  .....+  .++++|+++.|+++ +++++|+||++++|+
T Consensus       270 ff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g-~~~l~~l~~t~~~g~  348 (559)
T COG4988         270 FFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG-KPALSDLNLTIKAGQ  348 (559)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC-CcccCCceeEecCCc
Confidence            3579999999999999996666555544444443222221  122323  45556999999865 489999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      .+||+|+||||||||+++|+|+  .+|++|+|.+||.++.+++...+++ .+.|++|+|.+|++ |..+|+.++      
T Consensus       349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G~I~vng~~l~~l~~~~~~k-~i~~v~Q~p~lf~g-TireNi~l~------  418 (559)
T COG4988         349 LTALVGASGAGKSTLLNLLLGF--LAPTQGEIRVNGIDLRDLSPEAWRK-QISWVSQNPYLFAG-TIRENILLA------  418 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHhCc--CCCCCceEEECCccccccCHHHHHh-HeeeeCCCCccccc-cHHHHhhcc------
Confidence            9999999999999999999998  7889999999999999998877664 48899999998875 677776543      


Q ss_pred             hcCCCCCChHHHHHhHHHHHHhcCCc-----cccccccC---CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHH
Q 020520          187 KLGQPEIGPIEFYAYLYPKLERLSMK-----TDFLNRNV---NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA  258 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~---~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~  258 (325)
                         .++.++++..    +++++.++.     ++-+|..+   +..|||||+|||++||||+++++++|||||||+||.++
T Consensus       419 ---~~~~s~e~i~----~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et  491 (559)
T COG4988         419 ---RPDASDEEII----AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET  491 (559)
T ss_pred             ---CCcCCHHHHH----HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence               2333344433    334444332     11223222   33599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCeec
Q 020520          259 LRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA  321 (325)
Q Consensus       259 ~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~~  321 (325)
                      ++.|.+.|.++.++ +|+|+|||++..+..  +|+|++|++|++++.|.++  ++.++.|+|+
T Consensus       492 E~~i~~~l~~l~~~-ktvl~itHrl~~~~~--~D~I~vld~G~l~~~g~~~--~L~~~~~~y~  549 (559)
T COG4988         492 EQIILQALQELAKQ-KTVLVITHRLEDAAD--ADRIVVLDNGRLVEQGTHE--ELSEKQGLYA  549 (559)
T ss_pred             HHHHHHHHHHHHhC-CeEEEEEcChHHHhc--CCEEEEecCCceeccCCHH--HHhhcCcHHH
Confidence            99999999999765 899999999988876  6999999999999999765  5666777543

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=1.4e-49  Score=383.77  Aligned_cols=224  Identities=23%  Similarity=0.345  Sum_probs=191.2

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+....+ 
T Consensus         2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl--l~p~sG~I~l~G~~i~~~~~~~~~-   76 (402)
T PRK09536          2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT--LTPTAGTVLVAGDDVEALSARAAS-   76 (402)
T ss_pred             ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--CCCCCcEEEECCEEcCcCCHHHHh-
Confidence            47999999999964  6899999999999999999999999999999999998  689999999999999877655443 


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+++++|++.+++.+++.+++.+........+..  . ..+..+++.++++.+++. ++.++.+.+ |||||||||+||
T Consensus        77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~--~-~~~~~~~v~~~le~vgl~-~~~~~~~~~-LSgGerQRv~IA  151 (402)
T PRK09536         77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDT--W-TETDRAAVERAMERTGVA-QFADRPVTS-LSGGERQRVLLA  151 (402)
T ss_pred             cceEEEccCCCCCCCCCHHHHHHhccchhcccccC--C-CHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHHH
Confidence            35889999998888899999887643211001110  1 123345678889999996 677787765 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+++|++|||||||+|||+.++.+++++|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~-adrii~l~~G~iv~~G~~~e  225 (402)
T PRK09536        152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARY-CDELVLLADGRVRAAGPPAD  225 (402)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEecCHHH
Confidence            999999999999999999999999999999999986788999999999999887 69999999999999998763

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-49  Score=380.26  Aligned_cols=220  Identities=25%  Similarity=0.394  Sum_probs=191.7

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++|++++|++  +.+|+++||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...++.. 
T Consensus        16 ~~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~i~g~~i~~~~~~~-   90 (377)
T PRK11607         16 LTPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF--EQPTAGQIMLDGVDLSHVPPYQ-   90 (377)
T ss_pred             CCceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHH-
Confidence            4568999999999963  5799999999999999999999999999999999998  6799999999999987765432 


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                        ..++|+||++.+|+.+++.+|+.+.....       .....+...++.++++.+++. ++.++.+.+ |||||||||+
T Consensus        91 --r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-------~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~-LSgGq~QRVa  159 (377)
T PRK11607         91 --RPINMMFQSYALFPHMTVEQNIAFGLKQD-------KLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQ-LSGGQRQRVA  159 (377)
T ss_pred             --CCEEEEeCCCccCCCCCHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHH
Confidence              35899999999999999999987654321       112344456778899999996 677888765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+.+|++|||||||++||+..++.+.+.|+++.++ |.|+|+||||++++..+ +|++++|++|++++.|+++.
T Consensus       160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l-aDri~vl~~G~i~~~g~~~~  236 (377)
T PRK11607        160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTM-AGRIAIMNRGKFVQIGEPEE  236 (377)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCEEEEEeCCEEEEEcCHHH
Confidence            999999999999999999999999999999999988654 88999999999998887 69999999999999998753

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-49  Score=356.68  Aligned_cols=220  Identities=26%  Similarity=0.354  Sum_probs=184.2

Q ss_pred             CCcEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           75 QPLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      .++++++||++.|+++.  +++|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~i~~~~~~~   80 (233)
T PRK11629          3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL--DTPTSGDVIFNGQPMSKLSSAA   80 (233)
T ss_pred             CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCCHHH
Confidence            35899999999996422  4699999999999999999999999999999999998  6799999999999987766543


Q ss_pred             H---hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          153 R---SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       153 ~---~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      +   +...++|++|++.+++.+++.+++.......    +   ....+...++.++++.+++. +..++.+. +||||||
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgG~~  151 (233)
T PRK11629         81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG----K---KKPAEINSRALEMLAAVGLE-HRANHRPS-ELSGGER  151 (233)
T ss_pred             HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCc-hhhhCChh-hCCHHHH
Confidence            2   2246899999998888889999876543210    1   11223345677889999996 55666665 4999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +|.|||++|||++++...  +++++|++|++++.++
T Consensus       152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~--~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM--SRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh--CEEEEEECCEEEEEec
Confidence            999999999999999999999999999999999999999865 488999999999998764  5888999999998875

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-49  Score=373.78  Aligned_cols=225  Identities=26%  Similarity=0.390  Sum_probs=188.2

Q ss_pred             CCcEEEEEEEEEECCC--------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020520           75 QPLLQVTGLTAVIAES--------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL  146 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~--------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~  146 (325)
                      .++|+++||++.|+..        ...+|+||||+|++||++||+|+||||||||+++|+|+  ++|++|+|.++|+++.
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl--~~p~~G~i~~~g~~l~   80 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI--ETPTGGELYYQGQDLL   80 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCcEEEECCEEcC
Confidence            4589999999999631        24699999999999999999999999999999999998  6789999999999998


Q ss_pred             CCCHHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020520          147 EMEPEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE  222 (325)
Q Consensus       147 ~~~~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  222 (325)
                      .++....  .+..++|+||++  .+.+.+++.+++.......   .   .....+...++.++++.+++....+++.+.+
T Consensus        81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~---~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~  154 (327)
T PRK11308         81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN---T---SLSAAERREKALAMMAKVGLRPEHYDRYPHM  154 (327)
T ss_pred             cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc---c---CCCHHHHHHHHHHHHHHCCCChHHhcCCCcc
Confidence            7765431  224689999998  4667778777665432211   0   1123344567888999999964567777765


Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                       |||||+|||+|||||+.+|++||+||||++||..++.+++++|++++++ |.|||+||||+.++..+ ||+|++|++|+
T Consensus       155 -LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~-adrv~vm~~G~  232 (327)
T PRK11308        155 -FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHI-ADEVMVMYLGR  232 (327)
T ss_pred             -CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCE
Confidence             9999999999999999999999999999999999999999999999764 89999999999999887 69999999999


Q ss_pred             EEEEcCcc
Q 020520          302 IIKTGDAS  309 (325)
Q Consensus       302 iv~~g~~~  309 (325)
                      |++.|+.+
T Consensus       233 ive~g~~~  240 (327)
T PRK11308        233 CVEKGTKE  240 (327)
T ss_pred             EEEECCHH
Confidence            99999764

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=2e-49  Score=371.68  Aligned_cols=219  Identities=22%  Similarity=0.319  Sum_probs=185.4

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+|+++||+++|++  +.+|+++||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|+++.... .. .+
T Consensus         3 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~-~~-~~   76 (303)
T TIGR01288         3 VAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM--ISPDRGKITVLGEPVPSRA-RL-AR   76 (303)
T ss_pred             cEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECcccH-HH-Hh
Confidence            47999999999964  5799999999999999999999999999999999998  6799999999999875432 22 23


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|++|++.+++.+++.+++......    .+   ....+...++.++++.+++. +..++.+.. |||||||||+||
T Consensus        77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~-LSgG~~qrv~la  147 (303)
T TIGR01288        77 VAIGVVPQFDNLDPEFTVRENLLVFGRY----FG---MSTREIEAVIPSLLEFARLE-SKADVRVAL-LSGGMKRRLTLA  147 (303)
T ss_pred             hcEEEEeccccCCcCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCh-hHhcCchhh-CCHHHHHHHHHH
Confidence            4588999999888889999887643211    11   11223334566788999986 556777764 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+.+|++|||||||+|||+.+++.+++.|++++++|.|||++|||++++..+ ||++++|++|+++..|+++.
T Consensus       148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~  221 (303)
T TIGR01288       148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-CDRLCVLESGRKIAEGRPHA  221 (303)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999999977789999999999999887 69999999999999998653

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-50  Score=397.46  Aligned_cols=270  Identities=19%  Similarity=0.261  Sum_probs=219.4

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCE
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEV  107 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~  107 (325)
                      ...+..+..+.+.......+.+|+.+.++..+..... +..........|+++||+|.|+.. +.++|+|+||+|++||+
T Consensus       418 g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~  496 (716)
T KOG0058|consen  418 GSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEV  496 (716)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCE
Confidence            3556677777788888888899999998876665444 221111345689999999999863 35699999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +|||||||+||||++++|..+  |.|++|+|.+||+|+.+++...++ ..|++|-|+|.+|.. ++.||+.++.      
T Consensus       497 vALVGPSGsGKSTiasLL~rf--Y~PtsG~IllDG~~i~~~~~~~lr-~~Ig~V~QEPvLFs~-sI~eNI~YG~------  566 (716)
T KOG0058|consen  497 VALVGPSGSGKSTIASLLLRF--YDPTSGRILLDGVPISDINHKYLR-RKIGLVGQEPVLFSG-SIRENIAYGL------  566 (716)
T ss_pred             EEEECCCCCCHHHHHHHHHHh--cCCCCCeEEECCeehhhcCHHHHH-HHeeeeeccceeecc-cHHHHHhcCC------
Confidence            999999999999999999998  999999999999999999988766 458999999999875 7888876543      


Q ss_pred             cCCCCCChHHHH-----HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFY-----AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                         ...+.++..     +.+++.+..+..+.+..-.+-+.+||||||||+||||||+++|.||||||.||+||.+++..+
T Consensus       567 ---~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV  643 (716)
T KOG0058|consen  567 ---DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV  643 (716)
T ss_pred             ---CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH
Confidence               233334333     334556777766544443444457999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhC
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG  317 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~  317 (325)
                      .+.|.++.++ +|||+|.|.+..++.  +|+|+|+++|++++.|+.  .+++++.
T Consensus       644 q~aL~~~~~~-rTVlvIAHRLSTV~~--Ad~Ivvi~~G~V~E~G~h--~eLl~~~  693 (716)
T KOG0058|consen  644 QEALDRLMQG-RTVLVIAHRLSTVRH--ADQIVVIDKGRVVEMGTH--DELLSKP  693 (716)
T ss_pred             HHHHHHhhcC-CeEEEEehhhhHhhh--ccEEEEEcCCeEEecccH--HHHhhCc
Confidence            9999998654 899999999988876  699999999999999954  5677776

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.9e-49  Score=355.15  Aligned_cols=216  Identities=25%  Similarity=0.356  Sum_probs=182.4

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++.... ... +..
T Consensus         1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~-~~~-~~~   74 (220)
T cd03265           1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--LKPTSGRATVAGHDVVREP-REV-RRR   74 (220)
T ss_pred             CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecCcCh-HHH-hhc
Confidence            578999999964  5799999999999999999999999999999999998  6799999999999876432 222 235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.+++.+++.+++......    .+   ....+....+.++++.+++. +..++.+.+ |||||||||+||||
T Consensus        75 i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qr~~la~a  145 (220)
T cd03265          75 IGIVFQDLSVDDELTGWENLYIHARL----YG---VPGAERRERIDELLDFVGLL-EAADRLVKT-YSGGMRRRLEIARS  145 (220)
T ss_pred             EEEecCCccccccCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCH-HHhhCChhh-CCHHHHHHHHHHHH
Confidence            88999999888888998887654221    11   11223345677889999996 556777764 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+.+|++|||||||++||+.+++.+.+.|+++.++ |.|||++|||++++..+ +|++++|++|++++.|+++
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  217 (220)
T cd03265         146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQL-CDRVAIIDHGRIIAEGTPE  217 (220)
T ss_pred             HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCEEEEeCChH
Confidence            99999999999999999999999999999999765 88999999999999887 6999999999999888754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.4e-50  Score=347.37  Aligned_cols=221  Identities=24%  Similarity=0.366  Sum_probs=181.0

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCC--
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEME--  149 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~--  149 (325)
                      .+.++++||++.|+  ++.+|+|||++|++++++||+||||||||||||++..+...-|   .+|+|.++|+++....  
T Consensus         5 ~~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d   82 (253)
T COG1117           5 IPAIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD   82 (253)
T ss_pred             cceeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence            46799999999997  4789999999999999999999999999999999999733222   4699999999997653  


Q ss_pred             HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020520          150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG  226 (325)
Q Consensus       150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg  226 (325)
                      ....+ ..++||||.|.-|| ++.++|+..+....    +..   ..+..+.++..|+...+-.   +.+++... +|||
T Consensus        83 ~~~lR-r~vGMVFQkPnPFp-~SIydNVayG~r~~----g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~-~LSG  152 (253)
T COG1117          83 VVELR-RRVGMVFQKPNPFP-MSIYDNVAYGLRLH----GIK---DKELDEIVESSLKKAALWDEVKDRLHKSAL-GLSG  152 (253)
T ss_pred             HHHHH-HHheeeccCCCCCC-chHHHHHHHhHHhh----ccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCCcc-CCCh
Confidence            33333 34889999999998 89999988775432    111   1333444555555554421   33444554 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+||++|||||+.+|+|||||||||+|||.+...|.++|.+|+ +.-|||+|||++..+.++ .|+.+++..|++++.|
T Consensus       153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRv-SD~taFf~~G~LvE~g  230 (253)
T COG1117         153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARV-SDYTAFFYLGELVEFG  230 (253)
T ss_pred             hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHH-hHhhhhhcccEEEEEc
Confidence            99999999999999999999999999999999999999999997 457999999999999998 6999999999999999


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +.+
T Consensus       231 ~T~  233 (253)
T COG1117         231 PTD  233 (253)
T ss_pred             CHH
Confidence            865

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-49  Score=379.54  Aligned_cols=217  Identities=24%  Similarity=0.355  Sum_probs=188.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...   .
T Consensus         3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl--~~p~~G~I~~~g~~i~~~~~~~---~   75 (369)
T PRK11000          3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--EDITSGDLFIGEKRMNDVPPAE---R   75 (369)
T ss_pred             EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCHhH---C
Confidence            5899999999964  5799999999999999999999999999999999998  6799999999999987655432   3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+|+.+++.+.....    +   ....+...++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~----~---~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~-LSgGq~QRvaLAr  146 (369)
T PRK11000         76 GVGMVFQSYALYPHLSVAENMSFGLKLA----G---AKKEEINQRVNQVAEVLQLA-HLLDRKPKA-LSGGQRQRVAIGR  146 (369)
T ss_pred             CEEEEeCCcccCCCCCHHHHHHhHHhhc----C---CCHHHHHHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHHHH
Confidence            5899999999999999999987653211    1   12233445678889999996 567787765 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|+|+||||++++..+ ||++++|++|++++.|+++.
T Consensus       147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~-~d~i~vl~~G~i~~~g~~~~  220 (369)
T PRK11000        147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL-ADKIVVLDAGRVAQVGKPLE  220 (369)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999998764 88999999999998887 69999999999999998653

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-49  Score=372.38  Aligned_cols=225  Identities=26%  Similarity=0.325  Sum_probs=184.3

Q ss_pred             cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC--CCCccEEEECCEeCCCCCHHH
Q 020520           77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY--EVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~--~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      +|+++||++.|+...  ..+|+||||+|++||++||+|+||||||||+++|+|+...  .|++|+|.++|+++..++...
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            699999999996422  3699999999999999999999999999999999998321  148999999999998777654


Q ss_pred             Hhh---ccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCCCCCC
Q 020520          153 RSL---AGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVNEGFS  225 (325)
Q Consensus       153 ~~~---~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LS  225 (325)
                      ++.   ..++|+||++.  +.+.+++.+.+.......   .+   ....+..+++.++++.+++..  ..+++.+.+ ||
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~---~~---~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~-LS  155 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH---QG---GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ-LS  155 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHCCCCChHHHHhCCchh-CC
Confidence            322   35899999984  566677665544332111   01   123344566788999999953  345677765 99


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |||+|||+|||||+.+|++||+||||++||+.++..++++|+++++ .|.|+|+||||++++..+ +|+|++|++|+|++
T Consensus       156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~-adri~vm~~G~ive  234 (326)
T PRK11022        156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEA-AHKIIVMYAGQVVE  234 (326)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999976 488999999999999887 69999999999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+++
T Consensus       235 ~g~~~  239 (326)
T PRK11022        235 TGKAH  239 (326)
T ss_pred             ECCHH
Confidence            99764

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=3.7e-49  Score=352.59  Aligned_cols=216  Identities=27%  Similarity=0.378  Sum_probs=181.3

Q ss_pred             cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      +++++|++++|++..  .++|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++... .... 
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~-~~~~-   76 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL--LEPDAGFATVDGFDVVKE-PAEA-   76 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCceEEECCEEcccC-HHHH-
Confidence            578999999997421  1699999999999999999999999999999999998  679999999999988643 2222 


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..+++++|++.+++..++.+++......    .+   ....+...++.++++.+++. +..++.+.. ||||||||++|
T Consensus        77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~l  147 (218)
T cd03266          77 RRRLGFVSDSTGLYDRLTARENLEYFAGL----YG---LKGDELTARLEELADRLGME-ELLDRRVGG-FSTGMRQKVAI  147 (218)
T ss_pred             HhhEEEecCCcccCcCCCHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCH-HHHhhhhhh-cCHHHHHHHHH
Confidence            24588999999888888999887654221    11   11233345677889999995 566777764 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||+||||++++..+ +|++++|++|++++.|
T Consensus       148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~-~d~i~~l~~G~i~~~~  218 (218)
T cd03266         148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERL-CDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-cCEEEEEECCEEeecC
Confidence            9999999999999999999999999999999999976688999999999998877 6999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=4e-49  Score=355.94  Aligned_cols=221  Identities=23%  Similarity=0.378  Sum_probs=185.0

Q ss_pred             cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--
Q 020520           77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--  152 (325)
Q Consensus        77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--  152 (325)
                      ||+++|++++|++.  .+++|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...  
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~   78 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL--ERPTSGSVLVDGTDLTLLSGKELR   78 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcccCCHHHHH
Confidence            58899999999642  02799999999999999999999999999999999998  6799999999999987654332  


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      ..+..++|++|++.+++.+++.+++......    .+   ....+....+.++++.+++. +..++.+.. |||||||||
T Consensus        79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv  149 (233)
T cd03258          79 KARRRIGMIFQHFNLLSSRTVFENVALPLEI----AG---VPKAEIEERVLELLELVGLE-DKADAYPAQ-LSGGQKQRV  149 (233)
T ss_pred             HHHhheEEEccCcccCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCh-hhhhcChhh-CCHHHHHHH
Confidence            1234688999999988888998887654321    11   11223344567889999996 556777664 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++..+ +|++++|++|++++.|+++
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  226 (233)
T cd03258         150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRI-CDRVAVMEKGEVVEEGTVE  226 (233)
T ss_pred             HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEecCHH
Confidence            9999999999999999999999999999999999998765 88999999999998877 6999999999999998754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-49  Score=363.82  Aligned_cols=226  Identities=27%  Similarity=0.381  Sum_probs=187.0

Q ss_pred             cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH
Q 020520           77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~  151 (325)
                      +|+++||++.|....  ..+++||||+|++||++||||+|||||||+.+.|+|+++.+   -.+|+|.|+|+++..++.+
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            478999999996432  46999999999999999999999999999999999984311   3679999999999998876


Q ss_pred             HH---hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc--cccccCCCCC
Q 020520          152 ER---SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD--FLNRNVNEGF  224 (325)
Q Consensus       152 ~~---~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~L  224 (325)
                      ++   +...|+++||+|.  +.|.+++.+.+........   ..  ...++..+++.++|+.+++...  .++.++++ |
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~---~~--~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe-l  154 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG---KG--LSKKEAKERAIELLELVGIPDPERRLKSYPHE-L  154 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh---cc--hhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc-c
Confidence            43   2346999999985  4455665554443332211   00  0234566788899999999743  56777765 9


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      ||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.|+|+||||+..+..+ ||||+||+.|+||
T Consensus       155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~-aDri~VMYaG~iV  233 (316)
T COG0444         155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEI-ADRVAVMYAGRIV  233 (316)
T ss_pred             CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cceEEEEECcEEE
Confidence            99999999999999999999999999999999999999999999986 489999999999999998 6999999999999


Q ss_pred             EEcCcc
Q 020520          304 KTGDAS  309 (325)
Q Consensus       304 ~~g~~~  309 (325)
                      +.|+.+
T Consensus       234 E~g~~~  239 (316)
T COG0444         234 EEGPVE  239 (316)
T ss_pred             EeCCHH
Confidence            999875

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.3e-49  Score=365.77  Aligned_cols=222  Identities=22%  Similarity=0.311  Sum_probs=182.8

Q ss_pred             cEEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC---H
Q 020520           77 LLQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME---P  150 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~---~  150 (325)
                      ||+++||+++|+...   +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|+++|.++....   .
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~   78 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL--LQPTEGKVTVGDIVVSSTSKQKE   78 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--CCCCCcEEEECCEECcccccccc
Confidence            589999999996321   2599999999999999999999999999999999998  6899999999999985321   1


Q ss_pred             HHHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          151 EERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      ....+..++++||++  .++. .++.+++.+....    .+   ....+...++.++++.+++..++.++.+. .|||||
T Consensus        79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-~LSgGq  149 (288)
T PRK13643         79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQN----FG---IPKEKAEKIAAEKLEMVGLADEFWEKSPF-ELSGGQ  149 (288)
T ss_pred             HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCChhhccCCcc-cCCHHH
Confidence            112234689999987  4554 5888887644211    11   12334445677889999995446677776 499999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||+|++|++|++++.|++
T Consensus       150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~-~dri~~l~~G~i~~~g~~  228 (288)
T PRK13643        150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADY-ADYVYLLEKGHIISCGTP  228 (288)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999999976789999999999998877 699999999999999987


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       229 ~~  230 (288)
T PRK13643        229 SD  230 (288)
T ss_pred             HH
Confidence            53

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1e-48  Score=397.26  Aligned_cols=272  Identities=21%  Similarity=0.257  Sum_probs=209.3

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH  108 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~  108 (325)
                      ..|+..+......++.+..+.+|+.++++.++.................++++||++.|.+ ++++|+|+||+|++||++
T Consensus       301 ~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~-~~~vL~~i~l~i~~G~~v  379 (588)
T PRK11174        301 YQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD-GKTLAGPLNFTLPAGQRI  379 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC-CCeeeeeeEEEEcCCCEE
Confidence            3566667777778889999999999988755432111110001012235999999987754 367999999999999999


Q ss_pred             EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020520          109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL  188 (325)
Q Consensus       109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~  188 (325)
                      ||+|+||||||||+++|+|+  + |++|+|.++|.++..++...+++ .+++++|+|.+|.+ |..+|+.++        
T Consensus       380 aIvG~SGsGKSTL~~lL~g~--~-p~~G~I~i~g~~i~~~~~~~lr~-~i~~v~Q~~~LF~~-TI~eNI~~g--------  446 (588)
T PRK11174        380 ALVGPSGAGKTSLLNALLGF--L-PYQGSLKINGIELRELDPESWRK-HLSWVGQNPQLPHG-TLRDNVLLG--------  446 (588)
T ss_pred             EEECCCCCCHHHHHHHHhcC--C-CCCcEEEECCEecccCCHHHHHh-heEEecCCCcCCCc-CHHHHhhcC--------
Confidence            99999999999999999998  7 89999999999999998876654 58999999999876 888887553        


Q ss_pred             CCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020520          189 GQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA  263 (325)
Q Consensus       189 ~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~  263 (325)
                       .++.++++..+     .+.+.++.+..+.+..-..-+.+||||||||++|||||+++|+|||||||||+||.++++.+.
T Consensus       447 -~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~  525 (588)
T PRK11174        447 -NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM  525 (588)
T ss_pred             -CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence             22233333332     233445555332222222223469999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +.|.++. +++|+|+|||+++.+..  +|+|++|++|++++.|+.+  ++++.++.|
T Consensus       526 ~~l~~~~-~~~TvIiItHrl~~i~~--aD~Iivl~~G~i~e~G~~~--eL~~~~~~y  577 (588)
T PRK11174        526 QALNAAS-RRQTTLMVTHQLEDLAQ--WDQIWVMQDGQIVQQGDYA--ELSQAGGLF  577 (588)
T ss_pred             HHHHHHh-CCCEEEEEecChHHHHh--CCEEEEEeCCeEeecCCHH--HHHhcchHH
Confidence            9999985 46899999999988765  6999999999999999754  566666643

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=5.5e-49  Score=362.74  Aligned_cols=222  Identities=23%  Similarity=0.343  Sum_probs=186.2

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--  152 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--  152 (325)
                      +++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...  
T Consensus         5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~   80 (269)
T PRK11831          5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ--IAPDHGEILFDGENIPAMSRSRLY   80 (269)
T ss_pred             cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEccccChhhHH
Confidence            458999999999963  5799999999999999999999999999999999998  6799999999999887654322  


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      ..+..++++||++.+++.+++.+++.......    .  .....+....+.+.++.+++. +..++.+.+ |||||||||
T Consensus        81 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~----~--~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgGq~qrv  152 (269)
T PRK11831         81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREH----T--QLPAPLLHSTVMMKLEAVGLR-GAAKLMPSE-LSGGMARRA  152 (269)
T ss_pred             HHhhcEEEEecccccCCCCCHHHHHHHHHHHc----c--CCCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHHH
Confidence            11235889999998888889988876543211    0  011223334567788999996 566777764 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||+||||++++..+ ||++++|++|++++.|+++
T Consensus       153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~-~d~v~~l~~G~i~~~g~~~  229 (269)
T PRK11831        153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSI-ADHAYIVADKKIVAHGSAQ  229 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh-hCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999998754 78999999999999887 6999999999999998764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=7.1e-49  Score=357.35  Aligned_cols=241  Identities=53%  Similarity=0.876  Sum_probs=187.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +++|+|+||+|++||+++|+|+||||||||+++|+|+..++|++|+|.++|+++...+...+.+.
T Consensus         1 ~i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (248)
T PRK09580          1 MLSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE   78 (248)
T ss_pred             CeEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence            5899999999974  57999999999999999999999999999999999973235899999999998876655444445


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      ++++++|++.+++..++..+....................+....+.+.++.+++..+..++.+...|||||||||+|||
T Consensus        79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar  158 (248)
T PRK09580         79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ  158 (248)
T ss_pred             ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence            68899999887776665555433221100000000011122334566778888885445555553259999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE  316 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~  316 (325)
                      ||+.+|++|||||||++||+.+++.+.+.|+++++.++|||++|||++++...++|++++|++|++++.|+++..+..+.
T Consensus       159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~  238 (248)
T PRK09580        159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEE  238 (248)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHHHHHh
Confidence            99999999999999999999999999999999876688999999999988775469999999999999998876555554


Q ss_pred             CCe
Q 020520          317 GGY  319 (325)
Q Consensus       317 ~~~  319 (325)
                      .++
T Consensus       239 ~~~  241 (248)
T PRK09580        239 QGY  241 (248)
T ss_pred             cCC
Confidence            444

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=5.1e-49  Score=353.88  Aligned_cols=218  Identities=21%  Similarity=0.322  Sum_probs=179.7

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-----CCCccEEEECCEeCCCCCH-H
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-----EVTEGSVVFKGENLLEMEP-E  151 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-----~p~~G~I~~~g~~i~~~~~-~  151 (325)
                      |+++||+++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  +     +|++|+|.++|+++...+. .
T Consensus         1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~~~~~~~~~   76 (227)
T cd03260           1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL--NDLIPGAPDEGEVLLDGKDIYDLDVDV   76 (227)
T ss_pred             CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--cccccCCCCCeEEEECCEEhhhcchHH
Confidence            578999999964  5799999999999999999999999999999999998  5     7899999999999866542 1


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC-CCCCChHHHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV-NEGFSGGERK  230 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LSgGqrQ  230 (325)
                      ...+..++|++|++.++ ..++.+++.......    +..  ...+...++.++++.+++. +..++.+ ..+|||||||
T Consensus        77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~q  148 (227)
T cd03260          77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLH----GIK--LKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQ  148 (227)
T ss_pred             HHHHhhEEEEecCchhc-cccHHHHHHhHHHhc----CCC--cHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHH
Confidence            12234588999999887 789988876543211    110  1112335567788999996 4445553 2359999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ .|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~  225 (227)
T cd03260         149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARV-ADRTAFLLNGRLVEFGPTE  225 (227)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHh-CCEEEEEeCCEEEEecCcc
Confidence            999999999999999999999999999999999999999776 8999999999998877 6999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.7e-49  Score=363.14  Aligned_cols=220  Identities=24%  Similarity=0.330  Sum_probs=185.0

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++++++||+++|++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...++ 
T Consensus         3 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~-   78 (274)
T PRK13647          3 NIIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI--YLPQRGRVKVMGREVNAENEKWVR-   78 (274)
T ss_pred             ceEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEECCEECCCCCHHHHH-
Confidence            47999999999963 35699999999999999999999999999999999998  679999999999998765544432 


Q ss_pred             ccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          156 AGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       156 ~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ..++|+||++. .+...++.+++.+....    .+   ....+...++.++++.+++. +..++.+.+ |||||||||+|
T Consensus        79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LSgG~~qrv~l  149 (274)
T PRK13647         79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVN----MG---LDKDEVERRVEEALKAVRMW-DFRDKPPYH-LSYGQKKRVAI  149 (274)
T ss_pred             hhEEEEecChhhhhccCcHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHHCCCH-HHhcCChhh-CCHHHHHHHHH
Confidence            35899999973 34456888887643211    11   12233345677889999996 567777765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||||+.+|++|||||||++||+.++..++++|++++++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~  223 (274)
T PRK13647        150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEW-ADQVIVLKEGRVLAEGDKS  223 (274)
T ss_pred             HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999976689999999999998877 7999999999999999864

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=3.2e-49  Score=353.76  Aligned_cols=216  Identities=28%  Similarity=0.404  Sum_probs=180.1

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++||+++|++  +++|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+.....+..
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (222)
T cd03224           1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGSIRFDGRDITGLPPHERARAG   76 (222)
T ss_pred             CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcCCCCHHHHHhcC
Confidence            578999999964  5799999999999999999999999999999999998  679999999999998766554433346


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-CCccccccccCCCCCChHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-SMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      ++|+||++.+++.+++.+++.......    .     ..+....+.++++.+ ++. +..++.+.+ ||||||||++|||
T Consensus        77 i~~~~q~~~~~~~~t~~~~l~~~~~~~----~-----~~~~~~~~~~~l~~~~~l~-~~~~~~~~~-LS~G~~qrv~lar  145 (222)
T cd03224          77 IGYVPEGRRIFPELTVEENLLLGAYAR----R-----RAKRKARLERVYELFPRLK-ERRKQLAGT-LSGGEQQMLAIAR  145 (222)
T ss_pred             eEEeccccccCCCCcHHHHHHHHhhhc----C-----chhHHHHHHHHHHHHHhhh-hhhhCchhh-CCHHHHHHHHHHH
Confidence            889999999888889988876543211    1     011223445566666 353 445666654 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+.+|++|||||||+|||+.+++.+++.|+++++++.|||++|||++++..+ ||++++|++|++++.|+.+
T Consensus       146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  217 (222)
T cd03224         146 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI-ADRAYVLERGRVVLEGTAA  217 (222)
T ss_pred             HHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-ccEEEEeeCCeEEEeCCHH
Confidence            99999999999999999999999999999999876688999999999998887 6999999999999988654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=4.3e-49  Score=357.23  Aligned_cols=220  Identities=20%  Similarity=0.314  Sum_probs=183.2

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +++++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+..   +.
T Consensus         2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~---~~   74 (239)
T cd03296           2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL--ERPDSGTILFGGEDATDVPVQ---ER   74 (239)
T ss_pred             EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCCcc---cc
Confidence            4899999999964  5799999999999999999999999999999999998  679999999999987654321   23


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|++|++.+++..++.+++......... ..  .....+....+.++++.+++. +..++.+.+ |||||||||+|||
T Consensus        75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~la~  149 (239)
T cd03296          75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPR-SE--RPPEAEIRAKVHELLKLVQLD-WLADRYPAQ-LSGGQRQRVALAR  149 (239)
T ss_pred             ceEEEecCCcccCCCCHHHHHhhhhhhccc-cc--cCCHHHHHHHHHHHHHHcCCh-hhhhcChhh-CCHHHHHHHHHHH
Confidence            588999999888888998887654321100 00  001222334567789999985 556777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+.+|++|||||||+|||+.+++.+.++|++++++ |+|||++|||++.+..+ ||++++|++|++++.|+++
T Consensus       150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  222 (239)
T cd03296         150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEV-ADRVVVMNKGRIEQVGTPD  222 (239)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCeEEEecCHH
Confidence            999999999999999999999999999999999764 78999999999988877 6999999999999998765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=3.1e-49  Score=353.05  Aligned_cols=212  Identities=27%  Similarity=0.379  Sum_probs=176.5

Q ss_pred             EEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH---
Q 020520           78 LQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE---  152 (325)
Q Consensus        78 l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~---  152 (325)
                      |+++||+++|++..  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...   
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~   78 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL--DRPTSGEVRVDGTDISKLSEKELAA   78 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC--cCCCceeEEECCEehhhcchhHHHH
Confidence            47899999996421  5799999999999999999999999999999999998  6799999999999887654322   


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      ..+..++|++|++.+++.+++.+++.......    +   ....+....+.++++.+++. +..++.+.+ |||||||||
T Consensus        79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv  149 (218)
T cd03255          79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLA----G---VPKKERRERAEELLERVGLG-DRLNHYPSE-LSGGQQQRV  149 (218)
T ss_pred             HHhhcEEEEeeccccCCCCcHHHHHHHHHhhc----C---CCHHHHHHHHHHHHHHcCCc-hhhhcChhh-cCHHHHHHH
Confidence            12345889999999888889988876643211    1   11122334577889999996 456777764 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      +|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +|+|||+||||++++. + ||++++|++|++
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~-~d~v~~l~~G~i  218 (218)
T cd03255         150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-Y-ADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-h-hcEEEEeeCCcC
Confidence            999999999999999999999999999999999999976 4889999999999886 5 799999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-48  Score=368.99  Aligned_cols=224  Identities=21%  Similarity=0.304  Sum_probs=184.1

Q ss_pred             CCCcEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC--
Q 020520           74 SQPLLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM--  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~--  148 (325)
                      ..++|+++||+++|++.   ++++|+|+||+|++||++||+|+||||||||+++|+|+  ++|++|+|.++|.++...  
T Consensus        18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl--~~p~~G~I~i~g~~~~~~~~   95 (320)
T PRK13631         18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL--IKSKYGTIQVGDIYIGDKKN   95 (320)
T ss_pred             CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCEEcccccc
Confidence            34689999999999642   13699999999999999999999999999999999998  789999999999987542  


Q ss_pred             -------------CHHHHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc
Q 020520          149 -------------EPEERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT  213 (325)
Q Consensus       149 -------------~~~~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  213 (325)
                                   ......+..++++||++  .+++ .++.+++.+....    .   .....+...++.++++.+++..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~----~---~~~~~~~~~~~~~~l~~~gL~~  167 (320)
T PRK13631         96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVA----L---GVKKSEAKKLAKFYLNKMGLDD  167 (320)
T ss_pred             cccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHh----c---CCCHHHHHHHHHHHHHHcCCCh
Confidence                         11112234588999997  3554 4888887543211    1   1123344456778899999953


Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020520          214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF  293 (325)
Q Consensus       214 ~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~  293 (325)
                      .+.++.+. +|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|.++.++|.|||+||||++++..+ ||+
T Consensus       168 ~~~~~~~~-~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~-adr  245 (320)
T PRK13631        168 SYLERSPF-GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEV-ADE  245 (320)
T ss_pred             hHhcCCcc-cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCE
Confidence            46677776 4999999999999999999999999999999999999999999999876789999999999988776 699


Q ss_pred             EEEEeCCEEEEEcCcc
Q 020520          294 IHIMEDGRIIKTGDAS  309 (325)
Q Consensus       294 i~vl~~G~iv~~g~~~  309 (325)
                      |++|++|++++.|+++
T Consensus       246 i~vl~~G~i~~~g~~~  261 (320)
T PRK13631        246 VIVMDKGKILKTGTPY  261 (320)
T ss_pred             EEEEECCEEEEeCCHH
Confidence            9999999999999875

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=5.1e-49  Score=350.48  Aligned_cols=212  Identities=22%  Similarity=0.341  Sum_probs=179.5

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|+++.|++  +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+..   ...
T Consensus         1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~v~~~g~~~~~~~~~---~~~   73 (213)
T cd03301           1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--EEPTSGRIYIGGRDVTDLPPK---DRD   73 (213)
T ss_pred             CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCCcc---cce
Confidence            478999999964  5799999999999999999999999999999999998  679999999999998654332   135


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++..++.+++......    .+   ....+...++.++++.+++. +..++.+.+ ||||||||++||||
T Consensus        74 i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qr~~lara  144 (213)
T cd03301          74 IAMVFQNYALYPHMTVYDNIAFGLKL----RK---VPKDEIDERVREVAELLQIE-HLLDRKPKQ-LSGGQRQRVALGRA  144 (213)
T ss_pred             EEEEecChhhccCCCHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCH-HHHhCChhh-CCHHHHHHHHHHHH
Confidence            88999999888888998887654221    11   11233345567788999996 566777764 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++|||++++..+ +|++++|++|++++.|
T Consensus       145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l~~g~~~~~g  213 (213)
T cd03301         145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTM-ADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCeEEEEECCEEEecC
Confidence            99999999999999999999999999999998754 88999999999998877 6999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=9.5e-49  Score=370.64  Aligned_cols=226  Identities=25%  Similarity=0.346  Sum_probs=187.0

Q ss_pred             CCCcEEEEEEEEEECC--CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC---ccEEEECCEeCCCC
Q 020520           74 SQPLLQVTGLTAVIAE--SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEM  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~--~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---~G~I~~~g~~i~~~  148 (325)
                      ..++|+++||++.|+.  +...+|+|+||+|++||++||+|+||||||||+++|+|+  ++|+   +|+|.|+|+++..+
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl--~~p~~~~sG~I~~~G~~i~~~   86 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL--LAANGRIGGSATFNGREILNL   86 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC--CCCCCCCCeEEEECCEECCcC
Confidence            4568999999999953  224699999999999999999999999999999999998  5564   99999999999887


Q ss_pred             CHHHHh---hccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCC
Q 020520          149 EPEERS---LAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVN  221 (325)
Q Consensus       149 ~~~~~~---~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~  221 (325)
                      +...++   ...++|+||++  .+++.+++.+++.......    .  .....+...++.++++.+++..  +..++.+.
T Consensus        87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~----~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~  160 (330)
T PRK09473         87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH----K--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPH  160 (330)
T ss_pred             CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh----c--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence            765432   24699999998  4677788777665432211    0  1123444566788899999853  23455665


Q ss_pred             CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                       +|||||+|||+|||||+.+|++||+||||++||+.++..++++|++++++ |.|+|+||||++.+..+ +|+|++|++|
T Consensus       161 -~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~-~Dri~vm~~G  238 (330)
T PRK09473        161 -EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGI-CDKVLVMYAG  238 (330)
T ss_pred             -cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh-CCEEEEEECC
Confidence             49999999999999999999999999999999999999999999999765 88999999999999887 6999999999


Q ss_pred             EEEEEcCcc
Q 020520          301 RIIKTGDAS  309 (325)
Q Consensus       301 ~iv~~g~~~  309 (325)
                      +|++.|+++
T Consensus       239 ~ive~g~~~  247 (330)
T PRK09473        239 RTMEYGNAR  247 (330)
T ss_pred             EEEEECCHH
Confidence            999999865

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-49  Score=358.46  Aligned_cols=229  Identities=25%  Similarity=0.390  Sum_probs=188.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++|++++|++  +++|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+...+.
T Consensus         3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~   78 (255)
T PRK11300          3 QPLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTILLRGQHIEGLPGHQIA   78 (255)
T ss_pred             CceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC--cCCCcceEEECCEECCCCCHHHHH
Confidence            348999999999963  6799999999999999999999999999999999998  689999999999998776654444


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHh------hhcCCC--CCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARR------RKLGQP--EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG  226 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg  226 (325)
                      +.+++|+||++.+++.+++.+++........      ......  .....+....+.++++.+++. +..++.+.+ |||
T Consensus        79 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~  156 (255)
T PRK11300         79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGN-LAY  156 (255)
T ss_pred             hcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhh-CCH
Confidence            4568899999999998999998876421100      000000  001112234566778899985 566777764 999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      |||||++|||||+.+|++|||||||+|||+.+++.+.++|.+++++ |.|||++|||++++..+ ||++++|++|++++.
T Consensus       157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~g~i~~~  235 (255)
T PRK11300        157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI-SDRIYVVNQGTPLAN  235 (255)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHh-CCEEEEEECCeEEec
Confidence            9999999999999999999999999999999999999999999765 88999999999999887 699999999999999


Q ss_pred             cCccH
Q 020520          306 GDASI  310 (325)
Q Consensus       306 g~~~~  310 (325)
                      |+++.
T Consensus       236 ~~~~~  240 (255)
T PRK11300        236 GTPEE  240 (255)
T ss_pred             CCHHH
Confidence            88653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=6.5e-49  Score=350.04  Aligned_cols=212  Identities=21%  Similarity=0.311  Sum_probs=177.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~  154 (325)
                      ||+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...  ..
T Consensus         1 ~l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (214)
T TIGR02673         1 MIEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA--LTPSRGQVRIAGEDVNRLRGRQLPLL   77 (214)
T ss_pred             CEEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcccCCHHHHHHH
Confidence            5899999999952 35799999999999999999999999999999999998  6789999999999987655332  12


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|++|++.+++..++.+++......    .+   .........+.++++.+++. +..++.+.+ |||||||||+|
T Consensus        78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~l  148 (214)
T TIGR02673        78 RRRIGVVFQDFRLLPDRTVYENVALPLEV----RG---KKEREIQRRVGAALRQVGLE-HKADAFPEQ-LSGGEQQRVAI  148 (214)
T ss_pred             HhheEEEecChhhccCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHHHHH
Confidence            34588999999888888998887654321    11   11222335677889999996 456667654 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      ||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++++..+ ||++++|++|+
T Consensus       149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~-~d~i~~l~~G~  214 (214)
T TIGR02673       149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRV-AHRVIILDDGR  214 (214)
T ss_pred             HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCEEEEecCCC
Confidence            9999999999999999999999999999999999876688999999999999887 69999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=5.3e-50  Score=338.22  Aligned_cols=214  Identities=25%  Similarity=0.349  Sum_probs=186.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      |+.+++|+++|+.    .==.++++|+.||++||+||||||||||+++|+|+  ..|.+|+|+++|++....++.+|-  
T Consensus         1 ~l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF--~~P~~G~i~i~g~d~t~~~P~~RP--   72 (231)
T COG3840           1 MLALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF--ETPASGEILINGVDHTASPPAERP--   72 (231)
T ss_pred             CccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhc--cCCCCceEEEcCeecCcCCcccCC--
Confidence            4678999999963    33468899999999999999999999999999998  679999999999999887776553  


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                       +.++||+..+|..+++.+|+..+..+..   .   . ..+.+++++.++.++|+. .+.+|.+.+ |||||||||+|||
T Consensus        73 -VSmlFQEnNLFaHLtV~qNigLGl~P~L---k---L-~a~~r~~v~~aa~~vGl~-~~~~RLP~~-LSGGqRQRvALAR  142 (231)
T COG3840          73 -VSMLFQENNLFAHLTVAQNIGLGLSPGL---K---L-NAEQREKVEAAAAQVGLA-GFLKRLPGE-LSGGQRQRVALAR  142 (231)
T ss_pred             -hhhhhhccccchhhhhhhhhcccCCccc---c---c-CHHHHHHHHHHHHHhChh-hHhhhCccc-cCchHHHHHHHHH
Confidence             6788999999999999999877654321   1   1 233456788889999996 678888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|+++-+||+||||+|+|||.-+.+++.++.++..+ +.|++||||.++.+..+ +++++++++|+|.+.|+.+
T Consensus       143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~i-a~~~~fl~~Gri~~~g~~~  215 (231)
T COG3840         143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARI-ADRVVFLDNGRIAAQGSTQ  215 (231)
T ss_pred             HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHh-hhceEEEeCCEEEeeccHH
Confidence            999999999999999999999999999999999855 88999999999999998 6999999999999999764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=6.6e-49  Score=351.45  Aligned_cols=217  Identities=24%  Similarity=0.303  Sum_probs=181.2

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++||++.|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++.... ... ...
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~-~~~-~~~   76 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE--LRPTSGTAYINGYSIRTDR-KAA-RQS   76 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccch-HHH-hhh
Confidence            578999999964225799999999999999999999999999999999998  6799999999999886532 222 235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++..++.+++......    .+.   ...+...++.++++.+++. +..++.+.+ ||||||||++||||
T Consensus        77 i~~v~q~~~~~~~~tv~~~l~~~~~~----~~~---~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~a  147 (220)
T cd03263          77 LGYCPQFDALFDELTVREHLRFYARL----KGL---PKSEIKEEVELLLRVLGLT-DKANKRART-LSGGMKRKLSLAIA  147 (220)
T ss_pred             EEEecCcCCccccCCHHHHHHHHHHH----cCC---CHHHHHHHHHHHHHHcCCH-HHHhChhhh-CCHHHHHHHHHHHH
Confidence            88999999888888988887653221    111   1222334567788999995 556676664 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+.+|++|||||||++||+.+++.+.+.|+++++ +.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~-~d~i~~l~~g~i~~~~~~~  217 (220)
T cd03263         148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEAL-CDRIAIMSDGKLRCIGSPQ  217 (220)
T ss_pred             HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHh-cCEEEEEECCEEEecCCHH
Confidence            9999999999999999999999999999999876 48999999999998876 6999999999999988764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1.1e-48  Score=355.10  Aligned_cols=227  Identities=24%  Similarity=0.372  Sum_probs=187.2

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++|+++.|++  +++|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...+.+
T Consensus         1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~   76 (242)
T TIGR03411         1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK--TRPDEGSVLFGGTDLTGLPEHQIAR   76 (242)
T ss_pred             CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCeecCCCCHHHHHh
Confidence            37899999999964  5799999999999999999999999999999999998  6799999999999887665544334


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC-CCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG-QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      .++++++|++.+++.+++.+++............ .......+...++.++++.+++. +..++.+.. |||||+|||+|
T Consensus        77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Ge~qrv~l  154 (242)
T TIGR03411        77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGL-LSHGQKQWLEI  154 (242)
T ss_pred             cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHH
Confidence            5689999999999989999987654321100000 00001122345577889999996 556777764 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       155 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~-~d~i~~l~~g~~~~~~~~~~  228 (242)
T TIGR03411       155 GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSI-ADKVTVLHQGSVLAEGSLDQ  228 (242)
T ss_pred             HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHh-CCEEEEEECCeEEeeCCHHH
Confidence            9999999999999999999999999999999999865 68999999999999887 69999999999999987653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.5e-49  Score=358.37  Aligned_cols=228  Identities=23%  Similarity=0.284  Sum_probs=184.5

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~  154 (325)
                      |++++||+++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...  ..
T Consensus         1 ~l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T TIGR02315         1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL--VEPSSGSILLEGTDITKLRGKKLRKL   77 (243)
T ss_pred             CeEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCccEEEECCEEhhhCCHHHHHHH
Confidence            5789999999962 35799999999999999999999999999999999998  6799999999999887654322  12


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhc-CCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL-GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      +..+++++|++.+++.+++.+++........... ........+...++.++++.+++. +..++.+.+ |||||||||+
T Consensus        78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~  155 (243)
T TIGR02315        78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQ-LSGGQQQRVA  155 (243)
T ss_pred             HhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCccc-CCHHHHHHHH
Confidence            3458899999988888899888754321100000 000001122335577789999985 556777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~~~  232 (243)
T TIGR02315       156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKY-ADRIVGLKAGEIVFDGAPSE  232 (243)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCeEEEEECCEEEecCCHHH
Confidence            999999999999999999999999999999999998654 78999999999998877 69999999999999887653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.7e-49  Score=366.93  Aligned_cols=222  Identities=20%  Similarity=0.301  Sum_probs=182.6

Q ss_pred             cEEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC-----
Q 020520           77 LLQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM-----  148 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~-----  148 (325)
                      +|+++||+++|++..   ..+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...     
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i~~~g~~~~~~~~~~~   79 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPDTGTIEWIFKDEKNKKKTKE   79 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeccccccccc
Confidence            489999999996422   2599999999999999999999999999999999998  679999999998765311     


Q ss_pred             -------------------CHHHHhhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHh
Q 020520          149 -------------------EPEERSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER  208 (325)
Q Consensus       149 -------------------~~~~~~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  208 (325)
                                         ....+ +..++|+||++. .+...++.+++.+....    .+   ....+...++.++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~----~~---~~~~~~~~~~~~~l~~  151 (305)
T PRK13651         80 KEKVLEKLVIQKTRFKKIKKIKEI-RRRVGVVFQFAEYQLFEQTIEKDIIFGPVS----MG---VSKEEAKKRAAKYIEL  151 (305)
T ss_pred             ccccccccccccccccccchHHHH-HhceEEEeeCcccccccccHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHH
Confidence                               11222 346899999862 23346888887654221    11   2234445667889999


Q ss_pred             cCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020520          209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF  288 (325)
Q Consensus       209 ~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~  288 (325)
                      +++..++.++.+.. |||||||||+|||||+.+|++|||||||++||+.+++.+++.|++++++|.|||+||||++++..
T Consensus       152 ~gL~~~~~~~~~~~-LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~  230 (305)
T PRK13651        152 VGLDESYLQRSPFE-LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE  230 (305)
T ss_pred             cCCChhhhhCChhh-CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence            99964567777765 99999999999999999999999999999999999999999999997668999999999999887


Q ss_pred             hCCcEEEEEeCCEEEEEcCccH
Q 020520          289 IKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       289 ~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      + ||+|++|++|++++.|+++.
T Consensus       231 ~-adrv~vl~~G~i~~~g~~~~  251 (305)
T PRK13651        231 W-TKRTIFFKDGKIIKDGDTYD  251 (305)
T ss_pred             h-CCEEEEEECCEEEEECCHHH
Confidence            7 69999999999999998753

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-48  Score=363.04  Aligned_cols=222  Identities=18%  Similarity=0.300  Sum_probs=183.1

Q ss_pred             cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC---H
Q 020520           77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME---P  150 (325)
Q Consensus        77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~---~  150 (325)
                      +|+++||+++|++.   .+.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++....   .
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~   79 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL--LKPSSGTITIAGYHITPETGNKN   79 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence            58899999999632   14699999999999999999999999999999999998  6899999999999885421   1


Q ss_pred             HHHhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          151 EERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      ....+..++|++|++.  ++ ..++.+++.+....    ..   ....+...++.++++.+++..+..++.+.. |||||
T Consensus        80 ~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-LSgGq  150 (287)
T PRK13641         80 LKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKN----FG---FSEDEAKEKALKWLKKVGLSEDLISKSPFE-LSGGQ  150 (287)
T ss_pred             HHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCChhHhhCCccc-CCHHH
Confidence            1222346899999973  44 46888887643211    11   123334456778899999953456777765 99999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++|++++.|++
T Consensus       151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~-~d~v~~l~~G~i~~~g~~  229 (287)
T PRK13641        151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEY-ADDVLVLEHGKLIKHASP  229 (287)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999976789999999999999887 699999999999999986


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       230 ~~  231 (287)
T PRK13641        230 KE  231 (287)
T ss_pred             HH
Confidence            53

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.4e-49  Score=354.82  Aligned_cols=219  Identities=18%  Similarity=0.255  Sum_probs=182.2

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++++++||+++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+.....+
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~   79 (237)
T PRK11614          4 VMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD--PRATSGRIVFDGKDITDWQTAKIMR   79 (237)
T ss_pred             cEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCceEEECCEecCCCCHHHHHH
Confidence            58999999999963  5799999999999999999999999999999999998  6799999999999987765543334


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-CCccccccccCCCCCChHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-SMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ..+++++|++.+++..++.+++......     .    ...+....+.++++.+ ++. +..++.+. .||||||||++|
T Consensus        80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----~----~~~~~~~~~~~~l~~~~~l~-~~~~~~~~-~LS~G~~qrl~l  148 (237)
T PRK11614         80 EAVAIVPEGRRVFSRMTVEENLAMGGFF-----A----ERDQFQERIKWVYELFPRLH-ERRIQRAG-TMSGGEQQMLAI  148 (237)
T ss_pred             hCEEEeccCcccCCCCcHHHHHHHhhhc-----c----ChhHHHHHHHHHHHHHHHHH-HHHhCchh-hCCHHHHHHHHH
Confidence            4688999999888888998887653210     0    0111223345556666 343 34556665 499999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~~  223 (237)
T PRK11614        149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKL-ADRGYVLENGHVVLEDTGDA  223 (237)
T ss_pred             HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhh-CCEEEEEeCCEEEeeCCHHH
Confidence            9999999999999999999999999999999999876789999999999988887 69999999999999998753

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-48  Score=363.19  Aligned_cols=223  Identities=21%  Similarity=0.357  Sum_probs=183.4

Q ss_pred             cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-H
Q 020520           77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-E  152 (325)
Q Consensus        77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-~  152 (325)
                      .|+++||+++|+..   .+.+|+||||+|++||++||+|+||||||||+++|+|+  .+|++|+|.++|+++...+.. .
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~   79 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--LKPTSGKIIIDGVDITDKKVKLS   79 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEECCEECCCcCccHH
Confidence            38999999999642   14699999999999999999999999999999999998  689999999999998764311 1


Q ss_pred             HhhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHH
Q 020520          153 RSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERK  230 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQ  230 (325)
                      ..+..++|+||++. .+...++.+++.+....    .+   ....+...++.++++.+++.. +..++.+.. |||||||
T Consensus        80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-LSgGq~q  151 (287)
T PRK13637         80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN----LG---LSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-LSGGQKR  151 (287)
T ss_pred             HHhhceEEEecCchhccccccHHHHHHhHHHH----CC---CCHHHHHHHHHHHHHHcCCCchhhccCCccc-CCHHHHH
Confidence            12246889999974 22346888887643211    11   223444566788899999952 456777764 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |++|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||+||||++++..+ ||+|++|++|++++.|+++
T Consensus       152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~-~drv~~l~~G~i~~~g~~~  230 (287)
T PRK13637        152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKL-ADRIIVMNKGKCELQGTPR  230 (287)
T ss_pred             HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999999765 89999999999998877 6999999999999999765


Q ss_pred             H
Q 020520          310 I  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       231 ~  231 (287)
T PRK13637        231 E  231 (287)
T ss_pred             H
Confidence            3

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.3e-48  Score=354.28  Aligned_cols=220  Identities=21%  Similarity=0.333  Sum_probs=184.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-HHhh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-ERSL  155 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-~~~~  155 (325)
                      +++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++...... ...+
T Consensus         1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~   76 (240)
T PRK09493          1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL--EEITSGDLIVDGLKVNDPKVDERLIR   76 (240)
T ss_pred             CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCChhHHHHh
Confidence            5889999999963  5799999999999999999999999999999999998  679999999999998653321 1223


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|++|++.+++..++.+++.+.....   .+   ....+....+.++++.+++. +..++.+. .||||||||++||
T Consensus        77 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LS~G~~qrv~la  148 (240)
T PRK09493         77 QEAGMVFQQFYLFPHLTALENVMFGPLRV---RG---ASKEEAEKQARELLAKVGLA-ERAHHYPS-ELSGGQQQRVAIA  148 (240)
T ss_pred             hceEEEecccccCCCCcHHHHHHhHHHHh---cC---CCHHHHHHHHHHHHHHcCCh-HHHhcChh-hcCHHHHHHHHHH
Confidence            45889999998888889988875432110   01   11233345577889999996 45677776 4999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+.+|++|||||||+|||+.+++.+.++|++++++|+|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~  221 (240)
T PRK09493        149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV-ASRLIFIDKGRIAEDGDPQ  221 (240)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeeCCHH
Confidence            999999999999999999999999999999999876688999999999999877 6999999999999998765

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-48  Score=363.72  Aligned_cols=220  Identities=20%  Similarity=0.255  Sum_probs=181.5

Q ss_pred             EEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC---HH
Q 020520           78 LQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME---PE  151 (325)
Q Consensus        78 l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~---~~  151 (325)
                      ++++||+++|++.   .+++|+|+||+|++||+++|+|+||||||||+++|+|+  .+|++|+|.++|+++....   ..
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~   80 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL--LQPTSGTVTIGERVITAGKKNKKL   80 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECccccccchH
Confidence            8999999999642   14699999999999999999999999999999999998  6799999999999985321   11


Q ss_pred             HHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          152 ERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      ...+..++|+||++  .++ ..++.+++.+....    .+   ....+...++.++++.+++.....++.+.. ||||||
T Consensus        81 ~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-LSgGq~  151 (290)
T PRK13634         81 KPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMN----FG---VSEEDAKQKAREMIELVGLPEELLARSPFE-LSGGQM  151 (290)
T ss_pred             HHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCChhhhhCCccc-CCHHHH
Confidence            12224588999997  344 46888887654211    11   123344456788899999954556777764 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||+||||++++..+ ||+|++|++|++++.|++
T Consensus       152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~-~drv~~l~~G~i~~~g~~  230 (290)
T PRK13634        152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY-ADQIVVMHKGTVFLQGTP  230 (290)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999999754 89999999999999887 699999999999999976


Q ss_pred             c
Q 020520          309 S  309 (325)
Q Consensus       309 ~  309 (325)
                      +
T Consensus       231 ~  231 (290)
T PRK13634        231 R  231 (290)
T ss_pred             H
Confidence            5

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.6e-48  Score=400.75  Aligned_cols=270  Identities=22%  Similarity=0.280  Sum_probs=210.4

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++....  ..........++++||+|+|++.++++|+|+||+|++||.
T Consensus       404 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~  481 (686)
T TIGR03797       404 FSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA--KTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF  481 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--cCCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCE
Confidence            45677888888889999999999999988754432211  1111112346999999999975457899999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+|+||||||||+|+|+|+  ++|++|+|.+||+++..++....++ .+++++|++.+|++ |..+|+...       
T Consensus       482 vaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~-~i~~v~Q~~~lf~g-TI~eNi~~~-------  550 (686)
T TIGR03797       482 VAIVGPSGSGKSTLLRLLLGF--ETPESGSVFYDGQDLAGLDVQAVRR-QLGVVLQNGRLMSG-SIFENIAGG-------  550 (686)
T ss_pred             EEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEEcCcCCHHHHHh-ccEEEccCCccCcc-cHHHHHhcC-------
Confidence            999999999999999999998  8899999999999999988776553 48999999999875 788887543       


Q ss_pred             cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                        .+ .+.++.++.     +.+.++.+..+.+..-..-+.+||||||||++|||||+++|++||||||||+||+.+++.+
T Consensus       551 --~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i  627 (686)
T TIGR03797       551 --AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV  627 (686)
T ss_pred             --CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence              11 222222211     2233333332222211222346999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      .+.|+++   ++|+|+|||+++.+..  +|+|++|++|++++.|+.+  ++++.+++|
T Consensus       628 ~~~L~~~---~~T~IiItHr~~~i~~--~D~Iivl~~G~iv~~G~~~--~Ll~~~~~y  678 (686)
T TIGR03797       628 SESLERL---KVTRIVIAHRLSTIRN--ADRIYVLDAGRVVQQGTYD--ELMAREGLF  678 (686)
T ss_pred             HHHHHHh---CCeEEEEecChHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCcHH
Confidence            9999886   4699999999988865  6999999999999999764  566666654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.1e-48  Score=350.31  Aligned_cols=214  Identities=24%  Similarity=0.347  Sum_probs=179.2

Q ss_pred             EEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           78 LQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        78 l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      |+++|++++|++..  +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...      .
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~------~   72 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL--ERPTSGEVLVDGEPVTGP------G   72 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECccc------c
Confidence            47899999996311  4699999999999999999999999999999999998  678999999999987532      2


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+++++|++.+++..++.+++.......    +   .........+.++++.+++. +..++.+.. ||||||||++||
T Consensus        73 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrl~la  143 (220)
T cd03293          73 PDRGYVFQQDALLPWLTVLDNVALGLELQ----G---VPKAEARERAEELLELVGLS-GFENAYPHQ-LSGGMRQRVALA  143 (220)
T ss_pred             CcEEEEecccccccCCCHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCh-hhhhCCccc-CCHHHHHHHHHH
Confidence            35889999998888889988876543211    1   11222335577889999996 556777764 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEe--CCEEEEEcCcc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIME--DGRIIKTGDAS  309 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~--~G~iv~~g~~~  309 (325)
                      |||+.+|++|||||||+|||+.+++.+.++|+++.+ .|.|||++|||++++..+ ||++++|+  +|++++.++.+
T Consensus       144 ~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         144 RALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFL-ADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh-CCEEEEEECCCCEEEEEEEec
Confidence            999999999999999999999999999999999864 478999999999988877 69999999  79999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.1e-48  Score=351.51  Aligned_cols=220  Identities=28%  Similarity=0.428  Sum_probs=177.2

Q ss_pred             cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH--H
Q 020520           77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE--E  152 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~--~  152 (325)
                      +|+++||+++|++..  .++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+..  .
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~   78 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--LKPTSGSIIFDGKDLLKLSRRLRK   78 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEccccchhhHH
Confidence            578999999996421  2699999999999999999999999999999999998  679999999999998765531  1


Q ss_pred             HhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHh-HHHHHHhcCCccccccccCCCCCChHHH
Q 020520          153 RSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY-LYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       153 ~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      ..+..++|++|++  .+++.+++.+++.......    .. . ...+.... +.+.++.+++.....++.+.+ ||||||
T Consensus        79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~----~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LS~G~~  151 (228)
T cd03257          79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH----GK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYPHE-LSGGQR  151 (228)
T ss_pred             HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhc----cC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCchh-cCHHHH
Confidence            2234688999998  4556788888876542211    10 0 01111122 246788888843456677664 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++.+..+ ||++++|++|++++.|
T Consensus       152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~g  228 (228)
T cd03257         152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI-ADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCeEEEEeCCEEEecC
Confidence            9999999999999999999999999999999999999999765 88999999999998876 6999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=7.6e-49  Score=355.57  Aligned_cols=227  Identities=25%  Similarity=0.315  Sum_probs=183.3

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH--HHhh
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE--ERSL  155 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~--~~~~  155 (325)
                      ++++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+..  ...+
T Consensus         1 l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~~   77 (241)
T cd03256           1 IEVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--VEPTSGSVLIDGTDINKLKGKALRQLR   77 (241)
T ss_pred             CEEeeEEEecCC-ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEEECCEeccccCHhHHHHHH
Confidence            478999999963 25799999999999999999999999999999999998  678999999999998765521  1223


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhc-CCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL-GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ..+++++|++.+++..++.+++........... ............++.++++.+++. +..++.+.+ |||||||||+|
T Consensus        78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~l  155 (241)
T cd03256          78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQ-LSGGQQQRVAI  155 (241)
T ss_pred             hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCccc-CCHHHHHHHHH
Confidence            458899999988888899888765321100000 000001122234567788999995 556777764 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~~~  231 (241)
T cd03256         156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREY-ADRIVGLKDGRIVFDGPPAE  231 (241)
T ss_pred             HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeecCHHH
Confidence            99999999999999999999999999999999998754 88999999999999877 69999999999999987653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-48  Score=361.86  Aligned_cols=220  Identities=27%  Similarity=0.402  Sum_probs=185.4

Q ss_pred             CcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           76 PLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ++|+++||+++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...++
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~   80 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--LEAESGQIIIDGDLLTEENVWDIR   80 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECCcCcHHHHH
Confidence            479999999999642 24699999999999999999999999999999999998  689999999999998765544433


Q ss_pred             hccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ..++|+||++. .+...++.+++.+....    .+   ....+...++.++++.+++. ++.++.+.. ||||||||++
T Consensus        81 -~~i~~v~q~~~~~~~~~tv~eni~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGq~qrv~  150 (279)
T PRK13650         81 -HKIGMVFQNPDNQFVGATVEDDVAFGLEN----KG---IPHEEMKERVNEALELVGMQ-DFKEREPAR-LSGGQKQRVA  150 (279)
T ss_pred             -hhceEEEcChHHhcccccHHHHHHhhHHh----CC---CCHHHHHHHHHHHHHHCCCH-hHhhCCccc-CCHHHHHHHH
Confidence             35889999984 56667888887654211    11   22334445677889999996 567777765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||++|||++.+. . ||++++|++|+++..|+++
T Consensus       151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~-~dri~~l~~G~i~~~g~~~  225 (279)
T PRK13650        151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-L-SDRVLVMKNGQVESTSTPR  225 (279)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-h-CCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999765 899999999999884 5 7999999999999999865

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.7e-48  Score=355.36  Aligned_cols=220  Identities=22%  Similarity=0.281  Sum_probs=183.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH------
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP------  150 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~------  150 (325)
                      +++++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+.      
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (250)
T PRK11264          3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL--EQPEAGTIRVGDITIDTARSLSQQKG   78 (250)
T ss_pred             cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccccccchhh
Confidence            7999999999964  5799999999999999999999999999999999998  67899999999998864321      


Q ss_pred             -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                       ....+..+++++|++.+++..++.+++.......   ..   ....+....+.++++.+++. ...++.+. +||||||
T Consensus        79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LS~Gq~  150 (250)
T PRK11264         79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV---KG---EPKEEATARARELLAKVGLA-GKETSYPR-RLSGGQQ  150 (250)
T ss_pred             HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHcCCc-chhhCChh-hCChHHH
Confidence             1122346889999998888889988876532111   01   11223345567788999996 45666665 4999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  229 (250)
T PRK11264        151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDV-ADRAIFMDQGRIVEQGPAK  229 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999976688999999999998877 6999999999999998764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-48  Score=354.70  Aligned_cols=220  Identities=21%  Similarity=0.306  Sum_probs=185.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +++++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+.....+.
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (241)
T PRK10895          3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI--VPRDAGNIIIDDEDISLLPLHARARR   78 (241)
T ss_pred             eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHHHHh
Confidence            7999999999963  5799999999999999999999999999999999998  67999999999999876655433334


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|++.+++.+++.+++.......    .  .....+....+.++++.+++. +..++.+. .|||||+|||+|||
T Consensus        79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrv~lar  150 (241)
T PRK10895         79 GIGYLPQEASIFRRLSVYDNLMAVLQIR----D--DLSAEQREDRANELMEEFHIE-HLRDSMGQ-SLSGGERRRVEIAR  150 (241)
T ss_pred             CeEEeccCCcccccCcHHHHHhhhhhcc----c--ccCHHHHHHHHHHHHHHcCCH-HHhhcchh-hCCHHHHHHHHHHH
Confidence            6899999998888889988876532110    0  111223345577788999985 45566665 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||++.+..+ ||++++|++|++++.|+++
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~-~d~v~~l~~G~i~~~~~~~  222 (241)
T PRK10895        151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV-CERAYIVSQGHLIAHGTPT  222 (241)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh-cCEEEEEeCCeEEeeCCHH
Confidence            99999999999999999999999999999999876788999999999888877 6999999999999998765

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-48  Score=369.26  Aligned_cols=231  Identities=23%  Similarity=0.280  Sum_probs=184.4

Q ss_pred             CcEEEEEEEEEECC--CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC--CCCCccEEEECCEeCCCCCHH
Q 020520           76 PLLQVTGLTAVIAE--SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD--YEVTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        76 ~~l~~~~ls~~y~~--~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~--~~p~~G~I~~~g~~i~~~~~~  151 (325)
                      ++|+++||+++|+.  +...+|+|+||+|++||+++|+|+||||||||+++|+|+..  ..|++|+|.|+|+++...+..
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            47999999999953  23569999999999999999999999999999999999832  136899999999999877654


Q ss_pred             HHh---hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCCCCC
Q 020520          152 ERS---LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVNEGF  224 (325)
Q Consensus       152 ~~~---~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~L  224 (325)
                      .++   ...++|+||++.  +.+.+++.+++......... .+.......+...++.++++.+++..  +.+++.+.+ |
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~-L  159 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTY-KGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYE-L  159 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhc-cccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchh-C
Confidence            432   246899999986  45667777766432211000 00000011223456778999999963  245666664 9


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      ||||+|||+|||||+.+|++|||||||++||+.++.+++++|+++.++ |.|||+||||++++..+ ||+|++|++|+|+
T Consensus       160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~-~dri~vm~~G~iv  238 (330)
T PRK15093        160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQW-ADKINVLYCGQTV  238 (330)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999764 89999999999999887 6999999999999


Q ss_pred             EEcCcc
Q 020520          304 KTGDAS  309 (325)
Q Consensus       304 ~~g~~~  309 (325)
                      +.|+.+
T Consensus       239 e~g~~~  244 (330)
T PRK15093        239 ETAPSK  244 (330)
T ss_pred             EECCHH
Confidence            999764

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=1.6e-48  Score=349.66  Aligned_cols=215  Identities=20%  Similarity=0.266  Sum_probs=179.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~  154 (325)
                      ||+++|++++|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...  ..
T Consensus         1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~   77 (222)
T PRK10908          1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI--ERPSAGKIWFSGHDITRLKNREVPFL   77 (222)
T ss_pred             CEEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCChhHHHHH
Confidence            5899999999942 35799999999999999999999999999999999998  6799999999999887654332  12


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|++|++.+++..++.+++......    .+   ....+....+.++++.+++. +..++.+.+ ||||||||++|
T Consensus        78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~l  148 (222)
T PRK10908         78 RRQIGMIFQDHHLLMDRTVYDNVAIPLII----AG---ASGDDIRRRVSAALDKVGLL-DKAKNFPIQ-LSGGEQQRVGI  148 (222)
T ss_pred             HhheEEEecCccccccccHHHHHHhHHHh----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCCchh-CCHHHHHHHHH
Confidence            34688999999888888988887654211    01   11223334567788999986 456777764 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      ||||+.+|++|||||||++||+.+++.+.+.|+++++++.|||++|||++++..+ ||++++|++|+++.
T Consensus       149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~  217 (222)
T PRK10908        149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR-SYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEcc
Confidence            9999999999999999999999999999999999976688999999999999887 69999999999864

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=6.7e-49  Score=348.61  Aligned_cols=208  Identities=25%  Similarity=0.401  Sum_probs=176.7

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|++++|++  +++|+++||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...  ..+ +..
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~--~~~-~~~   73 (208)
T cd03268           1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL--IKPDSGEITFDGKSYQKN--IEA-LRR   73 (208)
T ss_pred             CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCCcccch--HHH-Hhh
Confidence            478999999963  5799999999999999999999999999999999998  678999999999987543  222 235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++..++.+++.......    +.   .    ..++.++++.+++. +..++.+.+ |||||||||+||||
T Consensus        74 i~~~~q~~~~~~~~tv~e~l~~~~~~~----~~---~----~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~a  140 (208)
T cd03268          74 IGALIEAPGFYPNLTARENLRLLARLL----GI---R----KKRIDEVLDVVGLK-DSAKKKVKG-FSLGMKQRLGIALA  140 (208)
T ss_pred             EEEecCCCccCccCcHHHHHHHHHHhc----CC---c----HHHHHHHHHHcCCH-HHHhhhHhh-CCHHHHHHHHHHHH
Confidence            889999998888889999876543211    11   1    23456778899985 456677664 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||++++..+ +|++++|++|++++.|
T Consensus       141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~-~d~v~~l~~g~i~~~g  208 (208)
T cd03268         141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV-ADRIGIINKGKLIEEG  208 (208)
T ss_pred             HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh-cCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999876788999999999999877 6999999999998754

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=1.5e-48  Score=347.52  Aligned_cols=212  Identities=21%  Similarity=0.329  Sum_probs=177.7

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hhh
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RSL  155 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~~  155 (325)
                      ++++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...  ..+
T Consensus         1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~~   77 (214)
T cd03292           1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE--ELPTSGTIRVNGQDVSDLRGRAIPYLR   77 (214)
T ss_pred             CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcccCCHHHHHHHH
Confidence            4789999999642 5799999999999999999999999999999999998  6799999999999987654322  122


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+++++|++.+++..++.+++.......    +   ....+...++.++++.+++. +..++.+. +||||||||++||
T Consensus        78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrv~la  148 (214)
T cd03292          78 RKIGVVFQDFRLLPDRNVYENVAFALEVT----G---VPPREIRKRVPAALELVGLS-HKHRALPA-ELSGGEQQRVAIA  148 (214)
T ss_pred             HheEEEecCchhccCCcHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCH-HHhhCChh-hcCHHHHHHHHHH
Confidence            46889999999888889998876543211    1   11223334577889999985 45666666 4999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      |||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++|||++++..+ ||++++|++|++
T Consensus       149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~-~d~i~~l~~G~~  214 (214)
T cd03292         149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT-RHRVIALERGKL  214 (214)
T ss_pred             HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEeCCcC
Confidence            999999999999999999999999999999999876688999999999999877 699999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.9e-48  Score=348.72  Aligned_cols=214  Identities=30%  Similarity=0.401  Sum_probs=177.6

Q ss_pred             cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-
Q 020520           77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER-  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~-  153 (325)
                      +|+++||+++|++..  +++|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+.... 
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~   78 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL--DNPTSGEVLFNGQSLSKLSSNERA   78 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEhhhcCHhHHH
Confidence            478999999996421  4699999999999999999999999999999999998  67999999999999876654322 


Q ss_pred             --hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          154 --SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       154 --~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                        +...++|++|++.+++..++.+++.......    .   ....+....+.++++.+++. +..++.+.. ||||||||
T Consensus        79 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qr  149 (221)
T TIGR02211        79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG----K---KSVKEAKERAYEMLEKVGLE-HRINHRPSE-LSGGERQR  149 (221)
T ss_pred             HHHHhcEEEEecccccCCCCcHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHH
Confidence              2245889999998888889988876542110    0   11122334567789999996 556777764 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      |+|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ +.|||++|||++++..  +|++++|++|+++
T Consensus       150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~--~d~v~~l~~G~i~  220 (221)
T TIGR02211       150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK--LDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh--cCEEEEEeCCEec
Confidence            99999999999999999999999999999999999998754 7899999999998854  4999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=2e-48  Score=353.52  Aligned_cols=219  Identities=21%  Similarity=0.294  Sum_probs=183.9

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++||+++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+.... +..
T Consensus         1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~-~~~   76 (242)
T cd03295           1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL--IEPTSGEIFIDGEDIREQDPVEL-RRK   76 (242)
T ss_pred             CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCeEcCcCChHHh-hcc
Confidence            4789999999642 5699999999999999999999999999999999998  67999999999998876554333 235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      ++|++|++.+++..++.+++......    .+   ....+....+.++++.+++.. ...++.+.+ |||||||||+|||
T Consensus        77 i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-LS~G~~qrv~lar  148 (242)
T cd03295          77 IGYVIQQIGLFPHMTVEENIALVPKL----LK---WPKEKIRERADELLALVGLDPAEFADRYPHE-LSGGQQQRVGVAR  148 (242)
T ss_pred             eEEEccCccccCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCCcHHHHhcChhh-CCHHHHHHHHHHH
Confidence            88999999888888999887654211    11   112233456778899999963 256676654 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++.+..+ +|++++|++|++++.|+++
T Consensus       149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  221 (242)
T cd03295         149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRL-ADRIAIMKNGEIVQVGTPD  221 (242)
T ss_pred             HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEecCHH
Confidence            999999999999999999999999999999999754 88999999999988877 6999999999999988764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=3.1e-48  Score=401.64  Aligned_cols=274  Identities=21%  Similarity=0.278  Sum_probs=212.7

Q ss_pred             eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCC---C--CCC-CCCCCcEEEEEEEEEECCCcccceeeeEE
Q 020520           27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSS---D--GQD-EKSQPLLQVTGLTAVIAESKQEILKGVNL  100 (325)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~---~--~~~-~~~~~~l~~~~ls~~y~~~~~~iL~~vsl  100 (325)
                      .+..|+..+......++....+.+|+.++++.+++......   .  ... ......|+++||+|+|++.++++|+|+||
T Consensus       421 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl  500 (710)
T TIGR03796       421 SFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSL  500 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeE
Confidence            34577888888888999999999999999876544322210   0  001 11234699999999998655789999999


Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHH
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA  180 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~  180 (325)
                      +|++||.+||+|+||||||||+|+|+|+  ++|++|+|.+||.++..++....++ .+++++|++.+|++ |..+|+...
T Consensus       501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~-~i~~v~Q~~~lf~g-Ti~eNi~l~  576 (710)
T TIGR03796       501 TLQPGQRVALVGGSGSGKSTIAKLVAGL--YQPWSGEILFDGIPREEIPREVLAN-SVAMVDQDIFLFEG-TVRDNLTLW  576 (710)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEeHHHCCHHHHHh-heeEEecCChhhhc-cHHHHhhCC
Confidence            9999999999999999999999999998  8899999999999999888766543 48899999998875 788887542


Q ss_pred             HHHHhhhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCC
Q 020520          181 YNARRRKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD  255 (325)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD  255 (325)
                               .++.+.++..+.     +.+.++.+..+.+..-..-+.+||||||||++|||||+++|++||||||||+||
T Consensus       577 ---------~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD  647 (710)
T TIGR03796       577 ---------DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD  647 (710)
T ss_pred             ---------CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCC
Confidence                     122223332221     233344443222222222344699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          256 VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       256 ~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +.+++.+.+.|++   .++|+|+|||+++.+..  +|+|++|++|++++.|+++  ++++.++.|
T Consensus       648 ~~te~~i~~~l~~---~~~T~IiitHrl~~i~~--~D~Iivl~~G~i~~~G~~~--~Ll~~~~~y  705 (710)
T TIGR03796       648 PETEKIIDDNLRR---RGCTCIIVAHRLSTIRD--CDEIIVLERGKVVQRGTHE--ELWAVGGAY  705 (710)
T ss_pred             HHHHHHHHHHHHh---cCCEEEEEecCHHHHHh--CCEEEEEeCCEEEEecCHH--HHHHcCCcH
Confidence            9999999999986   36899999999988865  6999999999999999765  566666654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=3.5e-48  Score=348.67  Aligned_cols=218  Identities=26%  Similarity=0.350  Sum_probs=181.4

Q ss_pred             CCcEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           75 QPLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      .++|+++||+++|++..  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~~~~~~~~~   81 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL--DDGSSGEVSLVGQPLHQMDEEA   81 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCeeEEECCEEcccCCHHH
Confidence            35899999999997422  2599999999999999999999999999999999998  6899999999999987665432


Q ss_pred             H---hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          153 R---SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       153 ~---~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      +   +...+++++|++.+++..++.+++.......    .   ....+...++.++++.+++. +..++.+.. ||||||
T Consensus        82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Ge~  152 (228)
T PRK10584         82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR----G---ESSRQSRNGAKALLEQLGLG-KRLDHLPAQ-LSGGEQ  152 (228)
T ss_pred             HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCH-hHhhCChhh-CCHHHH
Confidence            1   2246889999998888889888876542111    1   11223345677889999996 556777764 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      ||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++. . +|++++|++|++++.
T Consensus       153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~-~d~i~~l~~g~i~~~  227 (228)
T PRK10584        153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-R-CDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-h-CCEEEEEECCEEEec
Confidence            9999999999999999999999999999999999999998654 789999999999875 4 699999999999754

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=1.6e-48  Score=346.75  Aligned_cols=210  Identities=24%  Similarity=0.354  Sum_probs=176.9

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|+++.|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++..    . .+..
T Consensus         1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~----~-~~~~   71 (210)
T cd03269           1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI--ILPDSGEVLFDGKPLDI----A-ARNR   71 (210)
T ss_pred             CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCCchhH----H-HHcc
Confidence            478999999963  5799999999999999999999999999999999998  67999999999987642    1 1235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++..++.+++......    .+   ....+....+.++++.+++. +..++.+. +||||||||++||||
T Consensus        72 i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~la~a  142 (210)
T cd03269          72 IGYLPEERGLYPKMKVIDQLVYLAQL----KG---LKKEEARRRIDEWLERLELS-EYANKRVE-ELSKGNQQKVQFIAA  142 (210)
T ss_pred             EEEeccCCcCCcCCcHHHHHHHHHHH----cC---CChHHHHHHHHHHHHHcCCh-HHHhCcHh-hCCHHHHHHHHHHHH
Confidence            88999999888888998887653221    11   11223335577889999985 45666665 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|+++.+++.|||++|||++++..+ +|++++|++|++++.|
T Consensus       143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~g~i~~~~  210 (210)
T cd03269         143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL-CDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-hhEEEEEeCCEEEecC
Confidence            9999999999999999999999999999999876688999999999998877 6999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=4.9e-48  Score=354.02  Aligned_cols=223  Identities=23%  Similarity=0.334  Sum_probs=184.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC------
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM------  148 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~------  148 (325)
                      +.+|+++||++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...      
T Consensus         3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~   78 (257)
T PRK10619          3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGSIVVNGQTINLVRDKDGQ   78 (257)
T ss_pred             CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcccccccccc
Confidence            457999999999963  6799999999999999999999999999999999998  678999999999987531      


Q ss_pred             ----C--HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020520          149 ----E--PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE  222 (325)
Q Consensus       149 ----~--~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  222 (325)
                          .  .....+..++|++|++.+++..++.+++.......   ..   ....+...++.++++.+++.....++.+. 
T Consensus        79 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-  151 (257)
T PRK10619         79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV---LG---LSKQEARERAVKYLAKVGIDERAQGKYPV-  151 (257)
T ss_pred             cccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHHcCCChhhhhCCcc-
Confidence                1  11122346899999999888889999876432110   11   11233345677889999996322356665 


Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      .||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++|.|||+||||++++..+ ||++++|++|++
T Consensus       152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~-~d~i~~l~~G~i  230 (257)
T PRK10619        152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV-SSHVIFLHQGKI  230 (257)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEECCEE
Confidence            5999999999999999999999999999999999999999999999976789999999999999877 699999999999


Q ss_pred             EEEcCcc
Q 020520          303 IKTGDAS  309 (325)
Q Consensus       303 v~~g~~~  309 (325)
                      ++.|+++
T Consensus       231 ~~~~~~~  237 (257)
T PRK10619        231 EEEGAPE  237 (257)
T ss_pred             EEeCCHH
Confidence            9998765

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=3.5e-48  Score=362.86  Aligned_cols=217  Identities=21%  Similarity=0.311  Sum_probs=185.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +++++|++++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+  ++|++|+|.++|+++.... . ..+.
T Consensus         2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl--~~~~~G~i~i~g~~~~~~~-~-~~~~   75 (301)
T TIGR03522         2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY--LPPDSGSVQVCGEDVLQNP-K-EVQR   75 (301)
T ss_pred             EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCh-H-HHHh
Confidence            4899999999963  6799999999999999999999999999999999998  6799999999999886532 2 2234


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+++.+++.+++.+....    .+.   ...+...++.++++.+++. +..++.+.. |||||||||+|||
T Consensus        76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~----~~~---~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qrv~la~  146 (301)
T TIGR03522        76 NIGYLPEHNPLYLDMYVREYLQFIAGI----YGM---KGQLLKQRVEEMIELVGLR-PEQHKKIGQ-LSKGYRQRVGLAQ  146 (301)
T ss_pred             ceEEecCCCCCCCCCcHHHHHHHHHHH----cCC---CHHHHHHHHHHHHHHCCCc-hHhcCchhh-CCHHHHHHHHHHH
Confidence            589999999999999999987654221    111   1223345677889999996 456777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+++|++|||||||+|||+.+++.+++.|+++++ ++|||++||+++++..+ ||+|++|++|++++.|+.+.
T Consensus       147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~-~d~i~~l~~G~i~~~g~~~~  218 (301)
T TIGR03522       147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAI-CDRVIIINKGKIVADKKLDE  218 (301)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999965 68999999999999987 69999999999999998764

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.9e-48  Score=346.44  Aligned_cols=211  Identities=24%  Similarity=0.348  Sum_probs=177.4

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|+++.|++  +++|+|+||+|++| +++|+||||||||||+++|+|+  ++|++|+|.++|+++...+ ... +..
T Consensus         1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~-~~~-~~~   73 (211)
T cd03264           1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL--TPPSSGTIRIDGQDVLKQP-QKL-RRR   73 (211)
T ss_pred             CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCCccccch-HHH-Hhh
Confidence            478999999964  57999999999999 9999999999999999999998  6799999999999876544 222 245


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++.+++.+++.......    +   ....+....+.++++.+++. +..++.+.+ |||||||||+||||
T Consensus        74 i~~~~q~~~~~~~~tv~~~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~a  144 (211)
T cd03264          74 IGYLPQEFGVYPNFTVREFLDYIAWLK----G---IPSKEVKARVDEVLELVNLG-DRAKKKIGS-LSGGMRRRVGIAQA  144 (211)
T ss_pred             eEEecCCCcccccCCHHHHHHHHHHHh----C---CCHHHHHHHHHHHHHHCCCH-HHHhCchhh-CCHHHHHHHHHHHH
Confidence            889999999888889988876543211    1   11122334567788999996 456777764 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++++..+ +|++++|++|++++.|
T Consensus       145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~-~d~i~~l~~g~i~~~g  211 (211)
T cd03264         145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESL-CNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHh-CCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999976 48999999999998876 6999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=1.3e-48  Score=351.84  Aligned_cols=217  Identities=27%  Similarity=0.437  Sum_probs=179.3

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++||++.|++  +++|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++...+........
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (230)
T TIGR03410         1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL--LPVKSGSIRLDGEDITKLPPHERARAG   76 (230)
T ss_pred             CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCCHHHHHHhC
Confidence            578999999974  5799999999999999999999999999999999998  679999999999998766554333346


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.+++..++.+++.......    +.   ...   ....++++.++...+..++.+. +|||||+||++||||
T Consensus        77 i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~---~~~---~~~~~~l~~~~~l~~~~~~~~~-~LS~G~~qrv~la~a  145 (230)
T TIGR03410        77 IAYVPQGREIFPRLTVEENLLTGLAAL----PR---RSR---KIPDEIYELFPVLKEMLGRRGG-DLSGGQQQQLAIARA  145 (230)
T ss_pred             eEEeccCCcccCCCcHHHHHHHHHHhc----Cc---chH---HHHHHHHHHHHhHHHHhhCChh-hCCHHHHHHHHHHHH
Confidence            889999999888889988876543211    11   111   1234455555521244566665 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |+.+|++|||||||+|||+.+++.+.++|.++.++ +.|||++|||++++..+ ||+++++++|++++.|+.+.
T Consensus       146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~v~~l~~g~i~~~~~~~~  218 (230)
T TIGR03410       146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL-ADRYYVMERGRVVASGAGDE  218 (230)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999998764 78999999999999877 69999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=4e-48  Score=350.26  Aligned_cols=216  Identities=28%  Similarity=0.382  Sum_probs=182.0

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++|++++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+...+  .
T Consensus         1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~i~~~~~~~~--~   74 (236)
T TIGR03864         1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL--YVAQEGQISVAGHDLRRAPRAAL--A   74 (236)
T ss_pred             CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEcccCChhhh--h
Confidence            5889999999963  5799999999999999999999999999999999998  67999999999998866543322  2


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|++.+++..++.+++......    .+   ....+....+.++++.+++. +.+++.+.. |||||+||++|||
T Consensus        75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qrl~lar  145 (236)
T TIGR03864        75 RLGVVFQQPTLDLDLSVRQNLRYHAAL----HG---LSRAEARERIAALLARLGLA-ERADDKVRE-LNGGHRRRVEIAR  145 (236)
T ss_pred             hEEEeCCCCCCcccCcHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHHHH
Confidence            588999999887888888887543211    01   11223334567788999996 456777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|+++++ +|.|||++|||++++. . ||++++|++|++++.|+++
T Consensus       146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~i~~l~~G~i~~~~~~~  217 (236)
T TIGR03864       146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-A-DDRLVVLHRGRVLADGAAA  217 (236)
T ss_pred             HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-h-CCEEEEEeCCeEEEeCCHH
Confidence            99999999999999999999999999999999874 5889999999999986 4 7999999999999998764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=3.7e-48  Score=356.47  Aligned_cols=224  Identities=24%  Similarity=0.396  Sum_probs=184.1

Q ss_pred             cEEEEEEEEEECCC-------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC
Q 020520           77 LLQVTGLTAVIAES-------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME  149 (325)
Q Consensus        77 ~l~~~~ls~~y~~~-------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~  149 (325)
                      +|+++||++.|+..       ++.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~   79 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL--EKPAQGTVSFRGQDLYQLD   79 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEccccC
Confidence            68999999999631       35799999999999999999999999999999999998  6899999999999987655


Q ss_pred             HHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020520          150 PEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS  225 (325)
Q Consensus       150 ~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS  225 (325)
                      ....  .+..++|++|++  .+++..++.+++.......   ..   ....+...++.++++.+++.....++.+.. ||
T Consensus        80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-LS  152 (265)
T TIGR02769        80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL---TS---LDESEQKARIAELLDMVGLRSEDADKLPRQ-LS  152 (265)
T ss_pred             HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHcCCChhhhhCChhh-CC
Confidence            4321  224588999997  3556678888775432110   00   112223355778899999853456677664 99


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ |.|||++|||++.+..+ ||++++|++|++++
T Consensus       153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~  231 (265)
T TIGR02769       153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSF-CQRVAVMDKGQIVE  231 (265)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHH-hcEEEEEeCCEEEE
Confidence            99999999999999999999999999999999999999999998764 88999999999999877 69999999999999


Q ss_pred             EcCccH
Q 020520          305 TGDASI  310 (325)
Q Consensus       305 ~g~~~~  310 (325)
                      .|+++.
T Consensus       232 ~g~~~~  237 (265)
T TIGR02769       232 ECDVAQ  237 (265)
T ss_pred             ECCHHH
Confidence            998653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-48  Score=360.65  Aligned_cols=221  Identities=20%  Similarity=0.299  Sum_probs=181.2

Q ss_pred             cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---
Q 020520           77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---  150 (325)
Q Consensus        77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---  150 (325)
                      .++++||+++|+++   ++++|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++.....   
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl--~~p~~G~i~~~g~~i~~~~~~~~   79 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL--LKPTTGTVTVDDITITHKTKDKY   79 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence            38999999999632   14699999999999999999999999999999999998  68999999999999864321   


Q ss_pred             HHHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          151 EERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      ....+..++++||++  .+++ .++.+++.+....    .+   ....+...++.++++.+++..+..++.+. .|||||
T Consensus        80 ~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-~LSgGq  150 (286)
T PRK13646         80 IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKN----FK---MNLDEVKNYAHRLLMDLGFSRDVMSQSPF-QMSGGQ  150 (286)
T ss_pred             HHHHHhheEEEecChHhccch-hhHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHHcCCChhhhhCCcc-cCCHHH
Confidence            112234589999987  3444 4788877643211    11   12334445677889999995345666665 499999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||+||||++++..+ ||++++|++|++++.|+
T Consensus       151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~-~dri~~l~~G~i~~~g~  229 (286)
T PRK13646        151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARY-ADEVIVMKEGSIVSQTS  229 (286)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEECC
Confidence            9999999999999999999999999999999999999999975 489999999999998877 69999999999999998


Q ss_pred             cc
Q 020520          308 AS  309 (325)
Q Consensus       308 ~~  309 (325)
                      ++
T Consensus       230 ~~  231 (286)
T PRK13646        230 PK  231 (286)
T ss_pred             HH
Confidence            65

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=7.4e-48  Score=397.83  Aligned_cols=268  Identities=22%  Similarity=0.305  Sum_probs=209.9

Q ss_pred             eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020520           27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE  106 (325)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge  106 (325)
                      .+..|+..+......++....+.+|+.++++.+++................++++||+|+|+++.+++|+|+||+|++||
T Consensus       413 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~  492 (694)
T TIGR03375       413 RALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGE  492 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCC
Confidence            34577888888889999999999999999876543221111111111234699999999997555679999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      .+||+|+||||||||+|+|+|+  ++|++|+|.+||.++..++....+. .+++++|++.+|.+ |..+|+...      
T Consensus       493 ~iaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~l~~~~~~~lr~-~i~~v~Q~~~lf~~-TI~eNi~~~------  562 (694)
T TIGR03375       493 KVAIIGRIGSGKSTLLKLLLGL--YQPTEGSVLLDGVDIRQIDPADLRR-NIGYVPQDPRLFYG-TLRDNIALG------  562 (694)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEhhhCCHHHHHh-ccEEECCChhhhhh-hHHHHHhCC------
Confidence            9999999999999999999998  8899999999999999888776543 48899999998875 888887543      


Q ss_pred             hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                         .++.+.++..+.     +.+.++.+..+.+..-..-+..||||||||++|||||+++|++||||||||+||+++++.
T Consensus       563 ---~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~  639 (694)
T TIGR03375       563 ---APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER  639 (694)
T ss_pred             ---CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence               222233332222     233444443322222222234699999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +.+.|.++.+ ++|+|+|||+++.+..  ||+|++|++|++++.|+++.
T Consensus       640 i~~~l~~~~~-~~T~iiItHrl~~~~~--~D~iivl~~G~i~e~G~~~e  685 (694)
T TIGR03375       640 FKDRLKRWLA-GKTLVLVTHRTSLLDL--VDRIIVMDNGRIVADGPKDQ  685 (694)
T ss_pred             HHHHHHHHhC-CCEEEEEecCHHHHHh--CCEEEEEeCCEEEeeCCHHH
Confidence            9999999864 6899999999988764  69999999999999998654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=1.8e-48  Score=371.76  Aligned_cols=211  Identities=25%  Similarity=0.330  Sum_probs=182.6

Q ss_pred             EECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH---hhccEEEec
Q 020520           86 VIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER---SLAGLFMSF  162 (325)
Q Consensus        86 ~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~---~~~~i~~~~  162 (325)
                      +|+  ++.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+....   ++..++|+|
T Consensus         2 ~~~--~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl--~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~   77 (363)
T TIGR01186         2 KTG--GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL--IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF   77 (363)
T ss_pred             ccC--CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEE
Confidence            454  36799999999999999999999999999999999998  78999999999999988766543   235689999


Q ss_pred             cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC
Q 020520          163 QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA  242 (325)
Q Consensus       163 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p  242 (325)
                      |++.+|+.+|+.+|+.+....    .+   ....+..+++.++++.+++. .+.++.+.+ |||||||||+|||||+.+|
T Consensus        78 Q~~~l~~~~TV~eNi~~~~~~----~~---~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~-LSGGq~QRV~lARAL~~~p  148 (363)
T TIGR01186        78 QQFALFPHMTILQNTSLGPEL----LG---WPEQERKEKALELLKLVGLE-EYEHRYPDE-LSGGMQQRVGLARALAAEP  148 (363)
T ss_pred             CCCcCCCCCCHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHhcCCc-hhhhCChhh-CCHHHHHHHHHHHHHhcCC
Confidence            999999999999998765321    11   12334456788899999995 577888775 9999999999999999999


Q ss_pred             CEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          243 DLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       243 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ++|||||||++||+.+++.+.+.|.++.++ ++|||+||||++++..+ ||+|++|++|++++.|+++.
T Consensus       149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~-~drI~vl~~G~iv~~g~~~e  216 (363)
T TIGR01186       149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI-GDRIVIMKAGEIVQVGTPDE  216 (363)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCEEEeeCCHHH
Confidence            999999999999999999999999999754 88999999999998887 69999999999999998653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.1e-48  Score=345.97  Aligned_cols=210  Identities=26%  Similarity=0.420  Sum_probs=173.2

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL  158 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i  158 (325)
                      +++|++++|++..+.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...++ ..+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~i   77 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL--LGPTSGEVLVDGKDLTKLSLKELR-RKV   77 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEcccCCHHHHH-hhc
Confidence            36899999964225799999999999999999999999999999999998  679999999999988765443332 358


Q ss_pred             EEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          159 FMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       159 ~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +|++|++. .++..++.+++......    .+   ....+....+.++++.+++. +..++.+.. |||||||||+||||
T Consensus        78 ~~~~q~~~~~~~~~t~~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~lara  148 (211)
T cd03225          78 GLVFQNPDDQFFGPTVEEEVAFGLEN----LG---LPEEEIEERVEEALELVGLE-GLRDRSPFT-LSGGQKQRVAIAGV  148 (211)
T ss_pred             eEEecChhhhcCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCcH-hhhcCCccc-CCHHHHHHHHHHHH
Confidence            89999975 35567888887553211    11   11222334567788999996 556777764 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++|+
T Consensus       149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l~~G~  211 (211)
T cd03225         149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL-ADRVIVLEDGK  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEeCCC
Confidence            9999999999999999999999999999999976688999999999999887 69999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-48  Score=357.98  Aligned_cols=221  Identities=30%  Similarity=0.409  Sum_probs=186.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++||+++|++..+++|+++||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...+....+
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~--~~p~~G~i~~~g~~i~~~~~~~~~   80 (279)
T PRK13635          3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL--LLPEAGTITVGGMVLSEETVWDVR   80 (279)
T ss_pred             CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECCcCcHHHHh
Confidence            358999999999964345799999999999999999999999999999999998  679999999999998766544433


Q ss_pred             hccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ..++|+||++. .+...++.+++......    .+   ....+...++.++++.+++. +..++.+.. |||||||||+
T Consensus        81 -~~i~~~~q~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LS~G~~qrv~  150 (279)
T PRK13635         81 -RQVGMVFQNPDNQFVGATVQDDVAFGLEN----IG---VPREEMVERVDQALRQVGME-DFLNREPHR-LSGGQKQRVA  150 (279)
T ss_pred             -hheEEEEeCHHHhcccccHHHHHhhhHhh----CC---CCHHHHHHHHHHHHHHcCCh-hhhhCCccc-CCHHHHHHHH
Confidence             45899999984 56667888887654221    11   12334445678889999996 567777765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.++++|+++.++ |.|||++|||++++. . ||++++|++|++++.|+.+
T Consensus       151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~-~d~i~~l~~G~i~~~g~~~  225 (279)
T PRK13635        151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-Q-ADRVIVMNKGEILEEGTPE  225 (279)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-c-CCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999865 899999999999886 4 7999999999999999764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.2e-48  Score=357.16  Aligned_cols=219  Identities=24%  Similarity=0.367  Sum_probs=181.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      |++++||+++|++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++...+.......
T Consensus         1 ml~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (274)
T PRK13644          1 MIRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL--LRPQKGKVLVSGIDTGDFSKLQGIRK   77 (274)
T ss_pred             CEEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEECCccccHHHHHh
Confidence            5889999999963 35699999999999999999999999999999999998  67999999999999866543222234


Q ss_pred             cEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          157 GLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       157 ~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      .+++++|++. .+...++.+++.+....    .+   ....+....+.++++.+++. +..++.+.. |||||+|||+||
T Consensus        78 ~i~~v~q~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qrv~la  148 (274)
T PRK13644         78 LVGIVFQNPETQFVGRTVEEDLAFGPEN----LC---LPPIEIRKRVDRALAEIGLE-KYRHRSPKT-LSGGQGQCVALA  148 (274)
T ss_pred             heEEEEEChhhhcccchHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHHCCCH-HHhcCCccc-CCHHHHHHHHHH
Confidence            5889999985 35557888887543211    11   12333345677789999996 566777764 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++.+. . ||++++|++|++++.|+++
T Consensus       149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~-~d~v~~l~~G~i~~~g~~~  220 (274)
T PRK13644        149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-D-ADRIIVMDRGKIVLEGEPE  220 (274)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-h-CCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999767899999999999984 4 7999999999999998765

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=7.4e-48  Score=389.46  Aligned_cols=272  Identities=22%  Similarity=0.309  Sum_probs=215.6

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.++........  .......++++||+|+|++ ++++|+|+||+|++||.
T Consensus       281 ~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~  357 (567)
T COG1132         281 LLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEK  357 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCE
Confidence            45678888888889999999999999998864432222111  1122345999999999974 46899999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+||||||||||+++|+|+  ++|++|+|.+||.++...+...+++ .+++++|++.+|. -|+.+|+.++       
T Consensus       358 vaiVG~sGsGKSTl~~LL~r~--~~~~~G~I~idg~dI~~i~~~~lr~-~I~~V~Qd~~LF~-~TI~~NI~~g-------  426 (567)
T COG1132         358 VAIVGPSGSGKSTLIKLLLRL--YDPTSGEILIDGIDIRDISLDSLRK-RIGIVSQDPLLFS-GTIRENIALG-------  426 (567)
T ss_pred             EEEECCCCCCHHHHHHHHhcc--CCCCCCeEEECCEehhhcCHHHHHH-hccEEcccceeec-ccHHHHHhcC-------
Confidence            999999999999999999998  8899999999999999998877554 3778999999998 5888887654       


Q ss_pred             cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                        .++.++++..+.     +.+.++.++-+.+..-..-+..||||||||++||||++++|++||||||||+||+++++.+
T Consensus       427 --~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I  504 (567)
T COG1132         427 --RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALI  504 (567)
T ss_pred             --CCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHH
Confidence              233334443333     3444555522212222222346999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      .+.+.++. +++|+|+|+|++..+..  +|+|+||++|++++.|+++  +++..+|+|
T Consensus       505 ~~~l~~l~-~~rT~iiIaHRlsti~~--aD~IiVl~~G~i~e~G~h~--eLl~~~g~y  557 (567)
T COG1132         505 QDALKKLL-KGRTTLIIAHRLSTIKN--ADRIIVLDNGRIVERGTHE--ELLAKGGLY  557 (567)
T ss_pred             HHHHHHHh-cCCEEEEEeccHhHHHh--CCEEEEEECCEEEEecCHH--HHHHcCCHH
Confidence            99999876 45799999999987776  6999999999999999764  677777754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.6e-48  Score=345.51  Aligned_cols=204  Identities=25%  Similarity=0.383  Sum_probs=169.7

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL  158 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i  158 (325)
                      +++|++++|+++ +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++..   .. .+..+
T Consensus         1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~---~~-~~~~i   73 (205)
T cd03226           1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--IKESSGSILLNGKPIKA---KE-RRKSI   73 (205)
T ss_pred             CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEhhh---HH-hhcce
Confidence            368999999632 5799999999999999999999999999999999998  67999999999998743   12 22358


Q ss_pred             EEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          159 FMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       159 ~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +|++|++. .+...++.+++......    .+     ..  ..++.++++.+++. +..++.+.+ ||||||||++||||
T Consensus        74 ~~~~q~~~~~~~~~tv~e~l~~~~~~----~~-----~~--~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~lara  140 (205)
T cd03226          74 GYVMQDVDYQLFTDSVREELLLGLKE----LD-----AG--NEQAETVLKDLDLY-ALKERHPLS-LSGGQKQRLAIAAA  140 (205)
T ss_pred             EEEecChhhhhhhccHHHHHhhhhhh----cC-----cc--HHHHHHHHHHcCCc-hhcCCCchh-CCHHHHHHHHHHHH
Confidence            89999974 23346888887543211    11     01  13467789999996 567777764 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++.+..+ ||++++|++|+++
T Consensus       141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~G~iv  205 (205)
T cd03226         141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV-CDRVLLLANGAIV  205 (205)
T ss_pred             HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEC
Confidence            9999999999999999999999999999999976788999999999998877 6999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.4e-48  Score=381.16  Aligned_cols=225  Identities=30%  Similarity=0.458  Sum_probs=190.0

Q ss_pred             CCCcEEEEEEEEEECC---------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020520           74 SQPLLQVTGLTAVIAE---------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN  144 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~---------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~  144 (325)
                      ..|+++++||+++|..         +...+++||||+|.+||++||||+||||||||.|+|+|+  .+|++|+|.++|.+
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL--~~P~~G~i~~~g~~  354 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL--LPPSSGSIIFDGQD  354 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEEeCcc
Confidence            5789999999999973         124689999999999999999999999999999999998  67999999999988


Q ss_pred             CCCCCHH--HHhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC
Q 020520          145 LLEMEPE--ERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV  220 (325)
Q Consensus       145 i~~~~~~--~~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  220 (325)
                       ...+..  .+.+..+.++||+|.  +.|.+|+.+.+........    .  ....+..+++.++++.+++..+++++++
T Consensus       355 -~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~----~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP  427 (539)
T COG1123         355 -LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG----G--GSGAERRARVAELLELVGLPPEFLDRYP  427 (539)
T ss_pred             -cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc----c--cchHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence             333322  122235678889885  5677888887765543211    0  1123445678899999999877899999


Q ss_pred             CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      ++ ||||||||++|||||+.+|++||+|||||+||+..+..++++|++++++ |.|+|+||||+.++..+ ||||+||++
T Consensus       428 ~e-lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i-~drv~vm~~  505 (539)
T COG1123         428 HE-LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI-ADRVAVMYD  505 (539)
T ss_pred             hh-cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhh-CceEEEEEC
Confidence            86 9999999999999999999999999999999999999999999999866 99999999999999998 699999999


Q ss_pred             CEEEEEcCcc
Q 020520          300 GRIIKTGDAS  309 (325)
Q Consensus       300 G~iv~~g~~~  309 (325)
                      |+|++.|+.+
T Consensus       506 G~iVE~G~~~  515 (539)
T COG1123         506 GRIVEEGPTE  515 (539)
T ss_pred             CeEEEeCCHH
Confidence            9999999654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=2.1e-48  Score=402.67  Aligned_cols=274  Identities=18%  Similarity=0.318  Sum_probs=213.5

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++................++++||+|+|+. ++++|+|+||+|++||.
T Consensus       424 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~  502 (708)
T TIGR01193       424 FLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIKMNSK  502 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEECCCCE
Confidence            45677888888889999999999999988755443221110111122346999999999974 46799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+|+||||||||+++|+|+  ++|++|+|++||.++..++...++. .+++++|++.+|++ |..+|+....      
T Consensus       503 vaIvG~SGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~-~i~~v~Q~~~lf~g-TI~eNi~l~~------  572 (708)
T TIGR01193       503 TTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDIDRHTLRQ-FINYLPQEPYIFSG-SILENLLLGA------  572 (708)
T ss_pred             EEEECCCCCCHHHHHHHHhcc--CCCCCcEEEECCEEHHHcCHHHHHH-heEEEecCceehhH-HHHHHHhccC------
Confidence            999999999999999999998  8899999999999999888776554 48899999999876 8888875531      


Q ss_pred             cCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                        .++.+.++..+     .+.+.++.+..+.+..-..-+.+||||||||++|||||+++|++||||||||+||+++++.+
T Consensus       573 --~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i  650 (708)
T TIGR01193       573 --KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI  650 (708)
T ss_pred             --CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence              11222232222     23344444443322222233446999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      .+.|+++  +++|+|+|||+++.+..  +|+|++|++|++++.|+.+  ++++..|.|
T Consensus       651 ~~~L~~~--~~~T~IiitHr~~~~~~--~D~i~~l~~G~i~~~G~~~--~L~~~~~~y  702 (708)
T TIGR01193       651 VNNLLNL--QDKTIIFVAHRLSVAKQ--SDKIIVLDHGKIIEQGSHD--ELLDRNGFY  702 (708)
T ss_pred             HHHHHHh--cCCEEEEEecchHHHHc--CCEEEEEECCEEEEECCHH--HHHhcCCcH
Confidence            9999985  36899999999988764  6999999999999999764  566666654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-48  Score=372.33  Aligned_cols=222  Identities=24%  Similarity=0.359  Sum_probs=187.3

Q ss_pred             CcEEEEEEEEEECCCc----------------------ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC
Q 020520           76 PLLQVTGLTAVIAESK----------------------QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV  133 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~----------------------~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p  133 (325)
                      .+|+++||++.|+...                      ..+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|
T Consensus         3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl--~~p   80 (400)
T PRK10070          3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL--IEP   80 (400)
T ss_pred             cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC--CCC
Confidence            4688888888886521                      1279999999999999999999999999999999998  689


Q ss_pred             CccEEEECCEeCCCCCHHHH---hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcC
Q 020520          134 TEGSVVFKGENLLEMEPEER---SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS  210 (325)
Q Consensus       134 ~~G~I~~~g~~i~~~~~~~~---~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (325)
                      ++|+|.++|+++...+....   ++..++|+||++.+|+.+|+.+++.+.....    +.   ...+..+++.++++.++
T Consensus        81 ~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~----~~---~~~~~~~~~~e~L~~~g  153 (400)
T PRK10070         81 TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA----GI---NAEERREKALDALRQVG  153 (400)
T ss_pred             CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHcC
Confidence            99999999999977665432   2346899999999999999999987653211    11   12333456778899999


Q ss_pred             CccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhh
Q 020520          211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFI  289 (325)
Q Consensus       211 l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~  289 (325)
                      +. ++.++.+.+ |||||||||+|||||+.+|++|||||||++||+.+++.+.+.|.++.+ .|+|||+||||++++..+
T Consensus       154 L~-~~~~~~~~~-LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~  231 (400)
T PRK10070        154 LE-NYAHSYPDE-LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI  231 (400)
T ss_pred             CC-hhhhcCccc-CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence            96 567777765 999999999999999999999999999999999999999999999865 488999999999998877


Q ss_pred             CCcEEEEEeCCEEEEEcCcc
Q 020520          290 KPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       290 ~~d~i~vl~~G~iv~~g~~~  309 (325)
                       +|++++|++|++++.|+++
T Consensus       232 -~Dri~vL~~G~i~~~g~~~  250 (400)
T PRK10070        232 -GDRIAIMQNGEVVQVGTPD  250 (400)
T ss_pred             -CCEEEEEECCEEEecCCHH
Confidence             6999999999999988764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=2.9e-48  Score=363.60  Aligned_cols=210  Identities=26%  Similarity=0.336  Sum_probs=177.6

Q ss_pred             EEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccC
Q 020520           85 AVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS  164 (325)
Q Consensus        85 ~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~  164 (325)
                      ++|++  +.+|+|+||+|++||++||+||||||||||+|+|+|+  ++|++|+|.++|+++.... ... +..+++++|+
T Consensus         1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~-~~~-~~~i~~~~q~   74 (302)
T TIGR01188         1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL--LRPTSGTARVAGYDVVREP-RKV-RRSIGIVPQY   74 (302)
T ss_pred             CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCH-HHH-HhhcEEecCC
Confidence            35753  6799999999999999999999999999999999998  6799999999999886532 222 2347899999


Q ss_pred             CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCE
Q 020520          165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL  244 (325)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l  244 (325)
                      +.+++.+++.+++.+....    .+   ....+...++.++++.+++. +..++.+.. |||||||||+|||||+++|++
T Consensus        75 ~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~la~al~~~p~l  145 (302)
T TIGR01188        75 ASVDEDLTGRENLEMMGRL----YG---LPKDEAEERAEELLELFELG-EAADRPVGT-YSGGMRRRLDIAASLIHQPDV  145 (302)
T ss_pred             CCCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hHhCCchhh-CCHHHHHHHHHHHHHhcCCCE
Confidence            9999999999987654221    11   11223345677889999996 567777765 999999999999999999999


Q ss_pred             EEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          245 AILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       245 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||||+|||+.+++.++++|++++++|.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       146 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~  210 (302)
T TIGR01188       146 LFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL-CDRIAIIDHGRIIAEGTPEE  210 (302)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999977789999999999999887 69999999999999998754

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-48  Score=350.18  Aligned_cols=221  Identities=23%  Similarity=0.293  Sum_probs=183.0

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC---CH--H
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM---EP--E  151 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~---~~--~  151 (325)
                      +|+++|+++.|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...   ..  .
T Consensus         2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (242)
T PRK11124          2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL--EMPRSGTLNIAGNHFDFSKTPSDKAI   77 (242)
T ss_pred             EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecccccccchhhH
Confidence            5899999999964  5799999999999999999999999999999999998  679999999999987311   11  1


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                      ...+.+++|++|++.+++.+++.+++.......   .+   ....+....+.+.++.+++. ...++.+.. ||||||||
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qr  149 (242)
T PRK11124         78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRV---LG---LSKDQALARAEKLLERLRLK-PYADRFPLH-LSGGQQQR  149 (242)
T ss_pred             HHHHhheEEEecCccccCCCcHHHHHHHHHHHH---cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHH
Confidence            122246889999999888889988875422110   11   11223334577788999995 566777764 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++|+|||++|||++++..+ +|++++|++|++++.|+++.
T Consensus       150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l~~g~i~~~~~~~~  227 (242)
T PRK11124        150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKT-ASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999999876689999999999998877 69999999999999987653

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-48  Score=355.72  Aligned_cols=225  Identities=21%  Similarity=0.278  Sum_probs=185.8

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      +.++|+++||++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...+
T Consensus         8 ~~~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~   83 (265)
T PRK10575          8 SDTTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH--QPPSEGEILLDAQPLESWSSKAF   83 (265)
T ss_pred             CCceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCEehhhCCHHHH
Confidence            3468999999999963  5799999999999999999999999999999999998  67999999999998865554433


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      + ..+++++|++.+++.+++.+++.......   .............++.++++.+++. +..++.+.+ |||||||||+
T Consensus        84 ~-~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~  157 (265)
T PRK10575         84 A-RKVAYLPQQLPAAEGMTVRELVAIGRYPW---HGALGRFGAADREKVEEAISLVGLK-PLAHRLVDS-LSGGERQRAW  157 (265)
T ss_pred             h-hheEEeccCCCCCCCccHHHHHHhCcccc---cccccCCCHHHHHHHHHHHHHcCCH-HHhcCCccc-CCHHHHHHHH
Confidence            3 35889999988888888888875432100   0000000122234567788999995 566777765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+.++|.+++++ |.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~-~d~i~~l~~G~i~~~~~~~  233 (265)
T PRK10575        158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARY-CDYLVALRGGEMIAQGTPA  233 (265)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCeEEEecCHH
Confidence            999999999999999999999999999999999999754 88999999999999877 6999999999999988764

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=7.7e-48  Score=354.74  Aligned_cols=224  Identities=23%  Similarity=0.336  Sum_probs=181.5

Q ss_pred             CCcEEEEEEEEEECC-------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020520           75 QPLLQVTGLTAVIAE-------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE  147 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~-------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~  147 (325)
                      +++|+++||+++|++       +.+++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++..
T Consensus         2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~   79 (267)
T PRK15112          2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGELLIDDHPLHF   79 (267)
T ss_pred             cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCC
Confidence            358999999999962       124699999999999999999999999999999999998  78999999999998864


Q ss_pred             CCHHHHhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020520          148 MEPEERSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS  225 (325)
Q Consensus       148 ~~~~~~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS  225 (325)
                      .....+ ...++|++|++.  +++..++.+++.......   .   .....+..+.+.++++.+++..+..++.+. .||
T Consensus        80 ~~~~~~-~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~---~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LS  151 (267)
T PRK15112         80 GDYSYR-SQRIRMIFQDPSTSLNPRQRISQILDFPLRLN---T---DLEPEQREKQIIETLRQVGLLPDHASYYPH-MLA  151 (267)
T ss_pred             CchhhH-hccEEEEecCchhhcCcchhHHHHHHHHHHhc---c---CCCHHHHHHHHHHHHHHcCCChHHHhcCch-hcC
Confidence            333222 235889999975  455567766665432110   0   011223334577889999995345566665 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |||||||+|||||+.+|++|||||||+|||+.+++.+.+.|.++.++ |.|||++|||++.+..+ ||++++|++|++++
T Consensus       152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~-~d~i~~l~~G~i~~  230 (267)
T PRK15112        152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHI-SDQVLVMHQGEVVE  230 (267)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh-cCEEEEEECCEEEe
Confidence            99999999999999999999999999999999999999999999754 88999999999999877 69999999999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+++
T Consensus       231 ~~~~~  235 (267)
T PRK15112        231 RGSTA  235 (267)
T ss_pred             cCCHH
Confidence            88754

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-47  Score=349.38  Aligned_cols=219  Identities=24%  Similarity=0.366  Sum_probs=180.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-----ccEEEECCEeCCCCCH-
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-----EGSVVFKGENLLEMEP-  150 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-----~G~I~~~g~~i~~~~~-  150 (325)
                      +++++||+++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|+     +|+|.++|+++...+. 
T Consensus         1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~~~~~~G~i~~~g~~~~~~~~~   76 (247)
T TIGR00972         1 AIEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM--NDLVPGVRIEGKVLFDGQDIYDKKID   76 (247)
T ss_pred             CEEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc--CCCCcCCCCceEEEECCEEccccccc
Confidence            5889999999964  5699999999999999999999999999999999998  6677     9999999998864321 


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG  227 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG  227 (325)
                      ....+..++|+||++.+++ .++.+++.......    +.  ....+....+.++++.+++..   +..++.+. +||||
T Consensus        77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~----~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LSgG  148 (247)
T TIGR00972        77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH----GI--KDKKELDEIVEESLKKAALWDEVKDRLHDSAL-GLSGG  148 (247)
T ss_pred             hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc----CC--CCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc-cCCHH
Confidence            1122346899999998888 88888876543211    10  112233455777889999852   34566665 49999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||++|||||+.+|++|||||||+|||+.++..++++|++++++ .|||+||||++.+..+ ||++++|++|++++.|+
T Consensus       149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~~~  226 (247)
T TIGR00972       149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARI-SDRTAFFYDGELVEYGP  226 (247)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHh-CCEEEEEECCEEEEeCC
Confidence            999999999999999999999999999999999999999998764 8999999999988877 69999999999999987


Q ss_pred             cc
Q 020520          308 AS  309 (325)
Q Consensus       308 ~~  309 (325)
                      ++
T Consensus       227 ~~  228 (247)
T TIGR00972       227 TE  228 (247)
T ss_pred             HH
Confidence            65

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-48  Score=375.31  Aligned_cols=266  Identities=26%  Similarity=0.350  Sum_probs=206.0

Q ss_pred             chHhHh-hhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020520           31 PALPLL-CRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA  109 (325)
Q Consensus        31 ~~~~l~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~  109 (325)
                      ++.|+. .......+...+..|+.++.+.+++...+  ..+.......++++||+|+|++...++|+|+||++++||.+|
T Consensus       291 af~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~--~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvA  368 (573)
T COG4987         291 AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP--DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVA  368 (573)
T ss_pred             HHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC--ccccCCccceeeeccceeecCCCccchhhccceeecCCCeEE
Confidence            344455 44455666777788888887655443322  111111222899999999999766689999999999999999


Q ss_pred             EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020520          110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG  189 (325)
Q Consensus       110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (325)
                      |+|+||||||||+++|+|.  ++|++|+|.++|.++..++.+..+. .+.++.|.+.+|.+ |..+|+..         .
T Consensus       369 IlG~SGsGKSTllqLl~~~--~~~~~G~i~~~g~~~~~l~~~~~~e-~i~vl~Qr~hlF~~-Tlr~NL~l---------A  435 (573)
T COG4987         369 ILGRSGSGKSTLLQLLAGA--WDPQQGSITLNGVEIASLDEQALRE-TISVLTQRVHLFSG-TLRDNLRL---------A  435 (573)
T ss_pred             EECCCCCCHHHHHHHHHhc--cCCCCCeeeECCcChhhCChhhHHH-HHhhhccchHHHHH-HHHHHHhh---------c
Confidence            9999999999999999997  8899999999999999988765433 36677899988764 56666543         3


Q ss_pred             CCCCChHHHHHhHHHHHHhcCCccc------ccc---ccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020520          190 QPEIGPIEFYAYLYPKLERLSMKTD------FLN---RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR  260 (325)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~---~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~  260 (325)
                      .++.++++.+    ++++++|+..-      -++   ..-++.|||||+||++|||+|+++.+++||||||.|||+.+++
T Consensus       436 ~~~AsDEel~----~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~  511 (573)
T COG4987         436 NPDASDEELW----AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER  511 (573)
T ss_pred             CCCCCHHHHH----HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence            4455555544    34555555321      111   2234569999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          261 DVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       261 ~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      ++++.|.+..+ |+|+|+|||++..++.  +|+|+||++|+++++|++.  +++.++|++
T Consensus       512 ~vL~ll~~~~~-~kTll~vTHrL~~le~--~drIivl~~Gkiie~G~~~--~Ll~~~g~~  566 (573)
T COG4987         512 QVLALLFEHAE-GKTLLMVTHRLRGLER--MDRIIVLDNGKIIEEGTHA--ELLANNGRY  566 (573)
T ss_pred             HHHHHHHHHhc-CCeEEEEecccccHhh--cCEEEEEECCeeeecCCHH--hhhccccHH
Confidence            99999998754 7899999999998886  5999999999999999765  566777754

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.4e-49  Score=355.33  Aligned_cols=223  Identities=24%  Similarity=0.337  Sum_probs=196.7

Q ss_pred             CcEEEEEEEEEECCCc----------------------ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC
Q 020520           76 PLLQVTGLTAVIAESK----------------------QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV  133 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~----------------------~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p  133 (325)
                      ..++++||++-|+...                      ..-++|+||+|++||++.|+|-||||||||+|+|.+|  ++|
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL--iep   80 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--IEP   80 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhcc--CCC
Confidence            4689999999996321                      1257899999999999999999999999999999998  789


Q ss_pred             CccEEEECCEeCCCCCHHH---HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcC
Q 020520          134 TEGSVVFKGENLLEMEPEE---RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS  210 (325)
Q Consensus       134 ~~G~I~~~g~~i~~~~~~~---~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (325)
                      ++|+|+++|+++..++...   .++..++||||+..++|..|+.+|..++...       .....++..+++.+.++.+|
T Consensus        81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev-------~Gv~~~er~~~a~~~l~~Vg  153 (386)
T COG4175          81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEV-------QGVPKAEREERALEALELVG  153 (386)
T ss_pred             CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceee-------cCCCHHHHHHHHHHHHHHcC
Confidence            9999999999999988754   3345689999999999999999998776543       22345677788999999999


Q ss_pred             CccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhh
Q 020520          211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFI  289 (325)
Q Consensus       211 l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~  289 (325)
                      +. .+.++++.+ |||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.++.++ ++|||+||||++++..+
T Consensus       154 L~-~~~~~yp~e-LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri  231 (386)
T COG4175         154 LE-GYADKYPNE-LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI  231 (386)
T ss_pred             ch-hhhhcCccc-ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence            96 678888875 9999999999999999999999999999999999999999999998755 78999999999999998


Q ss_pred             CCcEEEEEeCCEEEEEcCccH
Q 020520          290 KPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       290 ~~d~i~vl~~G~iv~~g~~~~  310 (325)
                       .|||.+|++|+|++.|+|++
T Consensus       232 -G~rIaimkdG~ivQ~Gtp~e  251 (386)
T COG4175         232 -GDRIAIMKDGEIVQVGTPEE  251 (386)
T ss_pred             -cceEEEecCCeEEEeCCHHH
Confidence             69999999999999999874

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-47  Score=351.91  Aligned_cols=218  Identities=24%  Similarity=0.340  Sum_probs=183.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||++.|++  +.+|+|+||+|++|++++|+|+||||||||+++|+|+  .+|++|+|.++|.++...+...++ .
T Consensus         2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~p~~G~i~~~g~~~~~~~~~~~~-~   76 (258)
T PRK13548          2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE--LSPDSGEVRLNGRPLADWSPAELA-R   76 (258)
T ss_pred             eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEEcccCCHHHhh-h
Confidence            6899999999964  5799999999999999999999999999999999998  679999999999988765544332 3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|++|++.+++..++.+++......    ...   ...+....+.++++.+++. +..++.+.+ |||||||||+|||
T Consensus        77 ~i~~~~q~~~~~~~~tv~e~l~~~~~~----~~~---~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGe~qrv~la~  147 (258)
T PRK13548         77 RRAVLPQHSSLSFPFTVEEVVAMGRAP----HGL---SRAEDDALVAAALAQVDLA-HLAGRDYPQ-LSGGEQQRVQLAR  147 (258)
T ss_pred             heEEEccCCcCCCCCCHHHHHHhhhcc----cCC---CcHHHHHHHHHHHHHcCCH-hHhcCCccc-CCHHHHHHHHHHH
Confidence            588999998887778888887653211    010   1122234567788999985 556777764 9999999999999


Q ss_pred             HHH------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAV------LGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+      .+|++|||||||+|||+.+++.+.+.|+++. ++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  226 (258)
T PRK13548        148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARY-ADRIVLLHQGRLVADGTPA  226 (258)
T ss_pred             HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-cCEEEEEECCEEEeeCCHH
Confidence            999      5999999999999999999999999999987 5688999999999999877 6999999999999988764

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-47  Score=349.30  Aligned_cols=223  Identities=22%  Similarity=0.369  Sum_probs=183.2

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCHHH
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      ++++++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+...   .|++|+|.++|+++...+...
T Consensus         2 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   79 (250)
T PRK14247          2 NKIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE   79 (250)
T ss_pred             ceEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence            36999999999964  5799999999999999999999999999999999998321   147999999999987655444


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGER  229 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGqr  229 (325)
                      ++ ..++|++|++.+++..++.+++.......    ... ....+..+.+.++++.+++..   +.+++.+. +||||||
T Consensus        80 ~~-~~i~~v~q~~~~~~~~tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LSgG~~  152 (250)
T PRK14247         80 LR-RRVQMVFQIPNPIPNLSIFENVALGLKLN----RLV-KSKKELQERVRWALEKAQLWDEVKDRLDAPAG-KLSGGQQ  152 (250)
T ss_pred             Hh-ccEEEEeccCccCCCCcHHHHHHHHHHhc----ccc-CCHHHHHHHHHHHHHHcCCCcchhhhhcCCcc-cCCHHHH
Confidence            33 46899999998888889999886543211    100 012233455778889998842   23566665 4999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~  230 (250)
T PRK14247        153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARI-SDYVAFLYKGQIVEWGPTR  230 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-cCEEEEEECCeEEEECCHH
Confidence            999999999999999999999999999999999999999864 78999999999988777 6999999999999998765

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-48  Score=352.17  Aligned_cols=222  Identities=19%  Similarity=0.305  Sum_probs=183.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++|++++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+....+ .
T Consensus         2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~-~   76 (255)
T PRK11231          2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL--LTPQSGTVFLGDKPISMLSSRQLA-R   76 (255)
T ss_pred             EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCcEEEECCEEhHHCCHHHHh-h
Confidence            6899999999964  5799999999999999999999999999999999998  679999999999987655544332 3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+++.+++.+++..........++..   ..+....+.++++.+++. +..++.+.. |||||+|||+|||
T Consensus        77 ~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~lar  151 (255)
T PRK11231         77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL---SAEDNARVNQAMEQTRIN-HLADRRLTD-LSGGQRQRAFLAM  151 (255)
T ss_pred             heEEecccCCCCCCccHHHHHHhccchhhhhccCC---CHHHHHHHHHHHHHcCCH-HHHcCCccc-CCHHHHHHHHHHH
Confidence            58899999988887888888765321100001110   122234567788889985 456777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++|||++.+..+ +|++++|++|+++..|+++
T Consensus       152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  223 (255)
T PRK11231        152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRY-CDHLVVLANGHVMAQGTPE  223 (255)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHh-cCEEEEEECCeEEEEcCHH
Confidence            99999999999999999999999999999999876688999999999998887 6999999999999988765

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-48  Score=386.28  Aligned_cols=228  Identities=26%  Similarity=0.330  Sum_probs=190.1

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...+.....
T Consensus         3 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~~   78 (510)
T PRK09700          3 TPYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--HEPTKGTITINNINYNKLDHKLAA   78 (510)
T ss_pred             CceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--cCCCccEEEECCEECCCCCHHHHH
Confidence            358999999999963  5799999999999999999999999999999999998  678999999999998776654433


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|+||++.+++.+++.+++...........+.......+...++.++++.+++. +..++.+.+ |||||||||+|
T Consensus        79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgG~~qrv~i  156 (510)
T PRK09700         79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVAN-LSISHKQMLEI  156 (510)
T ss_pred             HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhh-CCHHHHHHHHH
Confidence            4468999999988888899888754321000000110011223345677889999996 567777765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..+ ||++++|++|++++.|+++
T Consensus       157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~-~d~v~~l~~G~i~~~g~~~  230 (510)
T PRK09700        157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRI-CDRYTVMKDGSSVCSGMVS  230 (510)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEeeecchh
Confidence            9999999999999999999999999999999999977789999999999999887 6999999999999998875

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-48  Score=354.97  Aligned_cols=218  Identities=24%  Similarity=0.328  Sum_probs=177.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC--CHHHHh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM--EPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~--~~~~~~  154 (325)
                      ||+++||+++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...  ..... 
T Consensus         1 ml~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~-   75 (271)
T PRK13638          1 MLATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL--LRPQKGAVLWQGKPLDYSKRGLLAL-   75 (271)
T ss_pred             CeEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCccEEEECCEEcccccCCHHHH-
Confidence            5899999999963  5799999999999999999999999999999999998  679999999999987421  11222 


Q ss_pred             hccEEEeccCCcc-CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSPVE-IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      +..++|++|++.. +...++.+++......    .+   ....+....+.++++.+++. ++.++.+. .||||||||++
T Consensus        76 ~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~~qrl~  146 (271)
T PRK13638         76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRN----LG---VPEAEITRRVDEALTLVDAQ-HFRHQPIQ-CLSHGQKKRVA  146 (271)
T ss_pred             HhheEEEeeChhhccccccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCH-hHhcCCch-hCCHHHHHHHH
Confidence            2358899999753 2334556665443211    11   11233344567788999985 55667766 49999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~-~d~i~~l~~G~i~~~g~~~  221 (271)
T PRK13638        147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEI-SDAVYVLRQGQILTHGAPG  221 (271)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999876688999999999999877 6999999999999999764

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=7.5e-48  Score=342.83  Aligned_cols=212  Identities=24%  Similarity=0.364  Sum_probs=175.8

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC-HHHHhhc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME-PEERSLA  156 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~-~~~~~~~  156 (325)
                      ++++||+++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++.... .....+.
T Consensus         1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (213)
T cd03262           1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL--EEPDSGTIIIDGLKLTDDKKNINELRQ   76 (213)
T ss_pred             CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCccchhHHHHHh
Confidence            478999999964  5799999999999999999999999999999999998  6799999999999875321 1112234


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|++|++.+++..++.+++.......   .+   ....+....+.++++.+++. +..++.+.+ |||||+||++|||
T Consensus        77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~  148 (213)
T cd03262          77 KVGMVFQQFNLFPHLTVLENITLAPIKV---KG---MSKAEAEERALELLEKVGLA-DKADAYPAQ-LSGGQQQRVAIAR  148 (213)
T ss_pred             cceEEecccccCCCCcHHHHHHhHHHHh---cC---CCHHHHHHHHHHHHHHcCCH-hHhhhCccc-cCHHHHHHHHHHH
Confidence            6889999999888889988876542110   01   11223334567788999986 456777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++.+..+ ||++++|++|++
T Consensus       149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~-~d~i~~l~~g~i  213 (213)
T cd03262         149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV-ADRVIFMDDGRI  213 (213)
T ss_pred             HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEeCCcC
Confidence            99999999999999999999999999999999976688999999999999877 699999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-47  Score=354.61  Aligned_cols=221  Identities=24%  Similarity=0.364  Sum_probs=183.6

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+++++||+++|++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...+ .
T Consensus         2 ~~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~-~   77 (277)
T PRK13652          2 HLIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI--LKPTSGSVLIRGEPITKENIREV-R   77 (277)
T ss_pred             ceEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHH-H
Confidence            46999999999963 24699999999999999999999999999999999998  68999999999999866544333 2


Q ss_pred             ccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          156 AGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       156 ~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ..+++++|++. .+...++.+++......    .   .....+....+.++++.+++. +..++.+.. ||||||||++|
T Consensus        78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----~---~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Gq~qrl~l  148 (277)
T PRK13652         78 KFVGLVFQNPDDQIFSPTVEQDIAFGPIN----L---GLDEETVAHRVSSALHMLGLE-ELRDRVPHH-LSGGEKKRVAI  148 (277)
T ss_pred             hheEEEecCcccccccccHHHHHHhHHHH----c---CCCHHHHHHHHHHHHHHCCCh-hHhcCCccc-CCHHHHHHHHH
Confidence            35789999974 23356888887543211    1   112333345677889999996 567777764 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~-~drv~~l~~G~i~~~g~~~~  224 (277)
T PRK13652        149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEM-ADYIYVMDKGRIVAYGTVEE  224 (277)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEECCeEEEECCHHH
Confidence            99999999999999999999999999999999999765 88999999999999877 69999999999999998653

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-48  Score=350.13  Aligned_cols=214  Identities=21%  Similarity=0.304  Sum_probs=179.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+...++ .
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~-~   77 (241)
T PRK14250          3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL--IDPTEGSILIDGVDIKTIDVIDLR-R   77 (241)
T ss_pred             eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEhhhcChHHhh-h
Confidence            5899999999963  5799999999999999999999999999999999998  679999999999998665443333 3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|++.+++ .++.+++......    .+     .  ...++.++++.+++..+..++.+. .||||||||++|||
T Consensus        78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~----~~-----~--~~~~~~~~l~~~~l~~~~~~~~~~-~LS~G~~qrl~la~  144 (241)
T PRK14250         78 KIGMVFQQPHLFE-GTVKDNIEYGPML----KG-----E--KNVDVEYYLSIVGLNKEYATRDVK-NLSGGEAQRVSIAR  144 (241)
T ss_pred             cEEEEecCchhch-hhHHHHHhcchhh----cC-----c--HHHHHHHHHHHcCCCHHHhhCCcc-cCCHHHHHHHHHHH
Confidence            5889999988776 5777775432110    00     0  123466778889985345666665 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  217 (241)
T PRK14250        145 TLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI-GDYTAFLNKGILVEYAKTY  217 (241)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh-CCEEEEEeCCEEEEeCCHH
Confidence            999999999999999999999999999999998764 88999999999998877 6999999999999988765

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-47  Score=356.06  Aligned_cols=220  Identities=24%  Similarity=0.359  Sum_probs=182.4

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC--CHHHH
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM--EPEER  153 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~--~~~~~  153 (325)
                      ++|+++|++++|++ ++.+|+++||+|++||+++|+|+||||||||+++|+|+  .+|++|+|.++|.++...  .....
T Consensus         4 ~~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl--~~p~~G~i~i~g~~~~~~~~~~~~~   80 (283)
T PRK13636          4 YILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI--LKPSSGRILFDGKPIDYSRKGLMKL   80 (283)
T ss_pred             ceEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCccEEEECCEECCCCcchHHHH
Confidence            48999999999963 35799999999999999999999999999999999998  679999999999998421  12222


Q ss_pred             hhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          154 SLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       154 ~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                       +..++|+||++. .+...++.+++......    .+   ....+...++.++++.+++. +..++.+.. ||||||||+
T Consensus        81 -~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LS~G~~qrl  150 (283)
T PRK13636         81 -RESVGMVFQDPDNQLFSASVYQDVSFGAVN----LK---LPEDEVRKRVDNALKRTGIE-HLKDKPTHC-LSFGQKKRV  150 (283)
T ss_pred             -HhhEEEEecCcchhhccccHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHCCCh-hhhhCCccc-CCHHHHHHH
Confidence             245899999974 23346888887553211    11   12233345677889999996 567777764 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~-~dri~~l~~G~i~~~g~~~  227 (283)
T PRK13636        151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPK  227 (283)
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999764 89999999999998877 6999999999999999865

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-47  Score=350.46  Aligned_cols=212  Identities=23%  Similarity=0.327  Sum_probs=178.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++....      .
T Consensus         1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~------~   70 (255)
T PRK11248          1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF--VPYQHGSITLDGKPVEGPG------A   70 (255)
T ss_pred             CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCC------C
Confidence            5899999999964  5799999999999999999999999999999999998  6799999999999875421      1


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|++.+++..++.+++......    .+   ....+...++.++++.+++. +..++.+. +|||||||||+|||
T Consensus        71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGq~qrl~lar  141 (255)
T PRK11248         71 ERGVVFQNEGLLPWRNVQDNVAFGLQL----AG---VEKMQRLEIAHQMLKKVGLE-GAEKRYIW-QLSGGQRQRVGIAR  141 (255)
T ss_pred             cEEEEeCCCccCCCCcHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hHhhCChh-hCCHHHHHHHHHHH
Confidence            368899999888888998887654221    11   11223345677889999996 45667766 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEe--CCEEEEEcCc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIME--DGRIIKTGDA  308 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~--~G~iv~~g~~  308 (325)
                      ||+.+|++|||||||+|||+.+++.+.++|+++.+ +|.|||++|||++++..+ ||++++|+  +|++++.++.
T Consensus       142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~-~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFM-ATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCCcEEEEEecC
Confidence            99999999999999999999999999999999854 588999999999999887 69999998  5999988654

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.5e-47  Score=386.02  Aligned_cols=268  Identities=23%  Similarity=0.321  Sum_probs=211.1

Q ss_pred             hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020520           30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA  109 (325)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~  109 (325)
                      .|+.++......+.+...+.+|+.++++.+++....... ........++++||+|+|+++++++|+|+||+|++||++|
T Consensus       292 ~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~a  370 (574)
T PRK11160        292 EALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTS-TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVA  370 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEE
Confidence            467778888888899999999999988755432211111 1112235699999999997544579999999999999999


Q ss_pred             EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020520          110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG  189 (325)
Q Consensus       110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (325)
                      |+||||||||||+++|+|+  ++|++|+|.++|.++..++...++. .+++++|++.+|++ |..+|+....        
T Consensus       371 ivG~sGsGKSTL~~ll~g~--~~p~~G~I~i~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~-ti~~Ni~~~~--------  438 (574)
T PRK11160        371 LLGRTGCGKSTLLQLLTRA--WDPQQGEILLNGQPIADYSEAALRQ-AISVVSQRVHLFSA-TLRDNLLLAA--------  438 (574)
T ss_pred             EECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEhhhCCHHHHHh-heeEEcccchhhcc-cHHHHhhcCC--------
Confidence            9999999999999999998  7899999999999999888766543 58899999998875 7788765431        


Q ss_pred             CCCCChHHHHHhHHHHHHhcCCcc-----cccccc---CCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          190 QPEIGPIEFYAYLYPKLERLSMKT-----DFLNRN---VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~---~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                       ++.+++    .+.++++.+++..     +-++..   -+..||||||||++|||||+++|++|||||||++||+++++.
T Consensus       439 -~~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~  513 (574)
T PRK11160        439 -PNASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ  513 (574)
T ss_pred             -CccCHH----HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence             222222    2344455555531     112222   233599999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +.+.|.++. +++|+|+|||+++.+..  +|+|++|++|++++.|+.  .++++.+|+|
T Consensus       514 i~~~l~~~~-~~~tviiitHr~~~~~~--~d~i~~l~~G~i~~~g~~--~~l~~~~g~y  567 (574)
T PRK11160        514 ILELLAEHA-QNKTVLMITHRLTGLEQ--FDRICVMDNGQIIEQGTH--QELLAQQGRY  567 (574)
T ss_pred             HHHHHHHHc-CCCEEEEEecChhHHHh--CCEEEEEeCCeEEEeCCH--HHHHhcCcHH
Confidence            999999985 47899999999988764  699999999999999975  4677777754

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-47  Score=352.02  Aligned_cols=208  Identities=21%  Similarity=0.289  Sum_probs=177.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||+++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++..     . 
T Consensus        10 ~~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~-----~-   79 (257)
T PRK11247         10 GTPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL--ETPSAGELLAGTAPLAE-----A-   79 (257)
T ss_pred             CCcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEHHH-----h-
Confidence            467999999999964  5799999999999999999999999999999999998  67999999999987532     1 


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|++|++.+++..++.+++.....         .    ....++.++++.+++. +..++.+. +|||||||||+|
T Consensus        80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~----~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqkqrl~l  144 (257)
T PRK11247         80 REDTRLMFQDARLLPWKKVIDNVGLGLK---------G----QWRDAALQALAAVGLA-DRANEWPA-ALSGGQKQRVAL  144 (257)
T ss_pred             hCceEEEecCccCCCCCcHHHHHHhccc---------c----hHHHHHHHHHHHcCCh-hHhcCChh-hCCHHHHHHHHH
Confidence            2358899999988888899888755321         0    0123466788999996 45667766 499999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      ||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .+.|||+||||++++..+ ||++++|++|++++.++.
T Consensus       145 araL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~-~d~i~~l~~G~i~~~~~~  218 (257)
T PRK11247        145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAM-ADRVLLIEEGKIGLDLTV  218 (257)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeeccc
Confidence            9999999999999999999999999999999999854 478999999999998877 699999999999988764

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=2.1e-47  Score=387.17  Aligned_cols=273  Identities=20%  Similarity=0.293  Sum_probs=207.9

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.++......  .........++++||+|+|+++++++|+|+||+|++||.
T Consensus       294 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~  371 (582)
T PRK11176        294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKT  371 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCE
Confidence            345777777777888888999999988876443321111  111112336999999999975456799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+|+||||||||+++|+|+  ++|++|+|.++|.++..++...++. .++|++|++.+|++ |..+|+..+.      
T Consensus       372 ~aIvG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~~~~-~i~~v~Q~~~lf~~-Ti~~Ni~~~~------  441 (582)
T PRK11176        372 VALVGRSGSGKSTIANLLTRF--YDIDEGEILLDGHDLRDYTLASLRN-QVALVSQNVHLFND-TIANNIAYAR------  441 (582)
T ss_pred             EEEECCCCCCHHHHHHHHHhc--cCCCCceEEECCEEhhhcCHHHHHh-hceEEccCceeecc-hHHHHHhcCC------
Confidence            999999999999999999998  7899999999999999888766543 48899999998874 7888875431      


Q ss_pred             cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                        ....++++.++.     +.+.++.+..+.+..-..-+.+||||||||++|||||+++|++||||||||+||+++++.+
T Consensus       442 --~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i  519 (582)
T PRK11176        442 --TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI  519 (582)
T ss_pred             --CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence              011222322221     2233444432212221222345999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY  319 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~  319 (325)
                      ++.|.++.+ ++|+|+|||+++.+..  +|+|++|++|++++.|+++  ++++..+.
T Consensus       520 ~~~l~~~~~-~~tvI~VtHr~~~~~~--~D~Ii~l~~g~i~e~g~~~--~l~~~~~~  571 (582)
T PRK11176        520 QAALDELQK-NRTSLVIAHRLSTIEK--ADEILVVEDGEIVERGTHA--ELLAQNGV  571 (582)
T ss_pred             HHHHHHHhC-CCEEEEEecchHHHHh--CCEEEEEECCEEEEeCCHH--HHHhCCCh
Confidence            999999753 5899999999987764  6999999999999999764  55666653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-47  Score=353.85  Aligned_cols=222  Identities=26%  Similarity=0.427  Sum_probs=184.9

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++++++|++++|+++++++|+++||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...+....
T Consensus         4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~   81 (271)
T PRK13632          4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--LKPQSGEIKIDGITISKENLKEI   81 (271)
T ss_pred             cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCcCCHHHH
Confidence            3468999999999964346799999999999999999999999999999999998  67999999999999865544333


Q ss_pred             hhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          154 SLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       154 ~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      + ..++|++|++. .++..|+.+++......    ..   ....+....+.++++.+++. +..++.+.. ||||||||+
T Consensus        82 ~-~~i~~v~q~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl  151 (271)
T PRK13632         82 R-KKIGIIFQNPDNQFIGATVEDDIAFGLEN----KK---VPPKKMKDIIDDLAKKVGME-DYLDKEPQN-LSGGQKQRV  151 (271)
T ss_pred             h-cceEEEEeCHHHhcCcccHHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCH-HHhhCCccc-CCHHHHHHH
Confidence            3 35889999974 56667888887654221    01   11233345577889999996 567777764 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||+|||+.+++.++++|++++++ +.|||++|||++.+. . ||++++|++|++++.|+++
T Consensus       152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~v~~l~~G~i~~~g~~~  227 (271)
T PRK13632        152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-L-ADKVIVFSEGKLIAQGKPK  227 (271)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-h-CCEEEEEECCEEEEecCHH
Confidence            9999999999999999999999999999999999998765 589999999999885 5 7999999999999988764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-47  Score=354.98  Aligned_cols=219  Identities=21%  Similarity=0.341  Sum_probs=179.7

Q ss_pred             EEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC----H
Q 020520           78 LQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME----P  150 (325)
Q Consensus        78 l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~----~  150 (325)
                      |+++||+++|++..   +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+    .
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~~   80 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--HVPTQGSVRVDDTLITSTSKNKDI   80 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccCH
Confidence            88999999996421   3699999999999999999999999999999999998  6899999999999886532    1


Q ss_pred             HHHhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          151 EERSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      ... +..++|++|++  .+++ .++.+++.+....    .+   ....+....+.++++.+++.....++.+.+ |||||
T Consensus        81 ~~~-~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgG~  150 (280)
T PRK13649         81 KQI-RKKVGLVFQFPESQLFE-ETVLKDVAFGPQN----FG---VSQEEAEALAREKLALVGISESLFEKNPFE-LSGGQ  150 (280)
T ss_pred             HHH-HhheEEEeeChhhhhcc-ccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCChhhhhCCccc-CCHHH
Confidence            222 23588999997  3444 5888887643211    11   112333445677888999853455677664 99999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++|++++.|++
T Consensus       151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~g~~  229 (280)
T PRK13649        151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY-ADFVYVLEKGKLVLSGKP  229 (280)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh-CCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999976688999999999999887 699999999999998876


Q ss_pred             c
Q 020520          309 S  309 (325)
Q Consensus       309 ~  309 (325)
                      +
T Consensus       230 ~  230 (280)
T PRK13649        230 K  230 (280)
T ss_pred             H
Confidence            4

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=1.9e-47  Score=350.28  Aligned_cols=224  Identities=25%  Similarity=0.342  Sum_probs=181.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe-----CCCCC
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN-----LLEME  149 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~-----i~~~~  149 (325)
                      .++|+++|++++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|++     +...+
T Consensus         4 ~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~i~~~~   79 (258)
T PRK11701          4 QPLLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR--LAPDAGEVHYRMRDGQLRDLYALS   79 (258)
T ss_pred             CceEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCccccccccccCC
Confidence            358999999999964  5799999999999999999999999999999999998  67999999999998     66554


Q ss_pred             HHHH---hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020520          150 PEER---SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF  224 (325)
Q Consensus       150 ~~~~---~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  224 (325)
                      ...+   .+..++|++|++.  +++..++.+++......    ....  ...+....+.++++.+++.....++.+.+ |
T Consensus        80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-L  152 (258)
T PRK11701         80 EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMA----VGAR--HYGDIRATAGDWLERVEIDAARIDDLPTT-F  152 (258)
T ss_pred             HHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHH----hccC--cHHHHHHHHHHHHHHcCCChhHHhCCCcc-C
Confidence            4332   2346899999974  45556666665432211    1110  11223445677889999853356677664 9


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      ||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++++..+ ||++++|++|+++
T Consensus       153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~-~d~i~~l~~g~i~  231 (258)
T PRK11701        153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL-AHRLLVMKQGRVV  231 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh-cCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998754 88999999999999877 6999999999999


Q ss_pred             EEcCccH
Q 020520          304 KTGDASI  310 (325)
Q Consensus       304 ~~g~~~~  310 (325)
                      +.|+++.
T Consensus       232 ~~~~~~~  238 (258)
T PRK11701        232 ESGLTDQ  238 (258)
T ss_pred             EeCCHHH
Confidence            9987653

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-47  Score=353.19  Aligned_cols=226  Identities=19%  Similarity=0.228  Sum_probs=186.7

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ...+|+++||+++|++  +.+|+++||+|.+||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...+
T Consensus         4 ~~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~   79 (265)
T PRK10253          4 SVARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL--MTPAHGHVWLDGEHIQHYASKEV   79 (265)
T ss_pred             cccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCcEEEECCEEhhhCCHHHH
Confidence            3558999999999974  5799999999999999999999999999999999998  67899999999998876554443


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      + ..++|+||++.+++..++.+++........   .............+.++++.+++. +..++.+.. ||||||||++
T Consensus        80 ~-~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Gq~qrv~  153 (265)
T PRK10253         80 A-RRIGLLAQNATTPGDITVQELVARGRYPHQ---PLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDT-LSGGQRQRAW  153 (265)
T ss_pred             h-hheEEeeccCcCCCCCcHHHHHHhCccccc---ccccCCCHHHHHHHHHHHHHcCCH-HHhcCCccc-CChHHHHHHH
Confidence            3 358899999988888888887754311100   000000122234567788999996 567777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+.+|++|||||||+|||+.+++.+.+.|.++.++ |.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~  230 (265)
T PRK10253        154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRY-ASHLIALREGKIVAQGAPKE  230 (265)
T ss_pred             HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999999999999999998764 88999999999998887 69999999999999998653

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-47  Score=348.63  Aligned_cols=219  Identities=24%  Similarity=0.371  Sum_probs=182.3

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC--------
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME--------  149 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~--------  149 (325)
                      |+++||++.|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++..++        
T Consensus         1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~~   76 (252)
T TIGR03005         1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL--EPIDEGQIQVEGEQLYHMPGRNGPLVP   76 (252)
T ss_pred             CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccccccc
Confidence            478999999964  5799999999999999999999999999999999998  6799999999999886442        


Q ss_pred             --HH--HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020520          150 --PE--ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS  225 (325)
Q Consensus       150 --~~--~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS  225 (325)
                        ..  ...+..+++++|++.+++..++.+++.......   .+   ....+....+.++++.+++. +..++.+. +||
T Consensus        77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LS  148 (252)
T TIGR03005        77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---LG---MARAEAEKRAMELLDMVGLA-DKADHMPA-QLS  148 (252)
T ss_pred             cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHcCCh-hHhhcChh-hcC
Confidence              11  112346889999998888889988876532110   01   11223334577889999995 56667765 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++.+..+ +|++++|++|++++
T Consensus       149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~  227 (252)
T TIGR03005       149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREF-ADRVCFFDKGRIVE  227 (252)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh-cCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998764 88999999999998776 69999999999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+.+
T Consensus       228 ~g~~~  232 (252)
T TIGR03005       228 QGKPD  232 (252)
T ss_pred             eCCHH
Confidence            98764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-47  Score=347.70  Aligned_cols=223  Identities=22%  Similarity=0.360  Sum_probs=179.9

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CC--CCccEEEECCEeCCCC--
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YE--VTEGSVVFKGENLLEM--  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~--p~~G~I~~~g~~i~~~--  148 (325)
                      ..|+|+++||+++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+.. ++  |++|+|.++|+++...  
T Consensus         3 ~~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   80 (253)
T PRK14242          3 SPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV   80 (253)
T ss_pred             CCcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence            4678999999999963  579999999999999999999999999999999999731 12  5899999999988542  


Q ss_pred             CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020520          149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS  225 (325)
Q Consensus       149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS  225 (325)
                      ..... +..++|++|++.+++ .++.+++.......    +..  .......++.+.++.+++..   +..++.+. .||
T Consensus        81 ~~~~~-~~~i~~v~q~~~~~~-~tv~enl~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS  151 (253)
T PRK14242         81 DVVEL-RRRVGMVFQKPNPFP-KSIFENVAYGLRVN----GVK--DKAYLAERVERSLRHAALWDEVKDRLHESAL-GLS  151 (253)
T ss_pred             CHHHH-hhcEEEEecCCCCCc-CcHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHHHcCCchhhhHHhhCCcc-cCC
Confidence            22222 246899999998887 48888876543211    110  11223345667788888742   23455565 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      |||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ +|++++|++|++++.
T Consensus       152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~-~d~v~~l~~G~i~~~  229 (253)
T PRK14242        152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARV-SDVTAFFYMGKLIEV  229 (253)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHh-CCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999854 68999999999998877 699999999999999


Q ss_pred             cCcc
Q 020520          306 GDAS  309 (325)
Q Consensus       306 g~~~  309 (325)
                      |+++
T Consensus       230 g~~~  233 (253)
T PRK14242        230 GPTE  233 (253)
T ss_pred             CCHH
Confidence            8764

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-47  Score=348.65  Aligned_cols=223  Identities=23%  Similarity=0.330  Sum_probs=180.3

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~  150 (325)
                      ..++|+++|++++|++  +.+|+|+||+|++||++||+|+||||||||+++|+|+...   .|++|+|.++|+++.....
T Consensus         9 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   86 (258)
T PRK14268          9 AQPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV   86 (258)
T ss_pred             cceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence            4568999999999963  5799999999999999999999999999999999998321   1489999999998754321


Q ss_pred             -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCCh
Q 020520          151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFSG  226 (325)
Q Consensus       151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LSg  226 (325)
                       ....+..++|++|++.+++ .++.+++.+....    .+.   ...+....+.++++.+++.   .+.+++.+. .|||
T Consensus        87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~----~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LSg  157 (258)
T PRK14268         87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRI----HGA---NKKDLDGVVENALRSAALWDETSDRLKSPAL-SLSG  157 (258)
T ss_pred             hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHH----cCC---CHHHHHHHHHHHHHHcCCCcchhhhhcCChh-hCCH
Confidence             1122346899999998877 7888887654211    111   1222334567788888873   134566665 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus       158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~~  235 (258)
T PRK14268        158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARI-SDYTGFFLMGELIEFG  235 (258)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHh-CCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999864 78999999999998877 6999999999999998


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       236 ~~~  238 (258)
T PRK14268        236 QTR  238 (258)
T ss_pred             CHH
Confidence            765

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-47  Score=349.59  Aligned_cols=221  Identities=22%  Similarity=0.322  Sum_probs=184.1

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|+++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...++ ..
T Consensus         2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~   76 (256)
T TIGR03873         2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA--LRPDAGTVDLAGVDLHGLSRRARA-RR   76 (256)
T ss_pred             ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCEEcccCCHHHHh-hh
Confidence            689999999964  5799999999999999999999999999999999998  679999999999998766554433 35


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++..+...++.+++.............   ...+...++.++++.+++. +..++.+.+ |||||+||++||||
T Consensus        77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~la~a  151 (256)
T TIGR03873        77 VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAG---DSPHDAAVVDRALARTELS-HLADRDMST-LSGGERQRVHVARA  151 (256)
T ss_pred             eEEecccCccCCCCCHHHHHHhcchhhhhhccC---CCHHHHHHHHHHHHHcCcH-hhhcCCccc-CCHHHHHHHHHHHH
Confidence            889999987777788888876542111000010   1112234577788999985 567777765 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++|++++.|+.+
T Consensus       152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~  222 (256)
T TIGR03873       152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASY-CDHVVVLDGGRVVAAGPPR  222 (256)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEeCCCEEEecCHH
Confidence            9999999999999999999999999999999976688999999999999877 6999999999999998865

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=8.2e-48  Score=354.96  Aligned_cols=217  Identities=25%  Similarity=0.347  Sum_probs=182.6

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH---hh
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER---SL  155 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~---~~  155 (325)
                      .++|+++.|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+....   ..
T Consensus        26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl--~~p~~G~i~i~g~~~~~~~~~~~~~~~~  101 (269)
T cd03294          26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--IEPTSGKVLIDGQDIAAMSRKELRELRR  101 (269)
T ss_pred             hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccChhhhhhhhc
Confidence            56799999964  6799999999999999999999999999999999998  67999999999999876544321   22


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|++|++.+++..++.+++......    .+   ....+...++.++++.+++. +..++.+.+ |||||||||+||
T Consensus       102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~Gq~qrv~lA  172 (269)
T cd03294         102 KKISMVFQSFALLPHRTVLENVAFGLEV----QG---VPRAEREERAAEALELVGLE-GWEHKYPDE-LSGGMQQRVGLA  172 (269)
T ss_pred             CcEEEEecCcccCCCCcHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCH-hHhhCCccc-CCHHHHHHHHHH
Confidence            4689999999888888999887654321    11   11222334567789999996 567777765 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+.+|++|||||||+|||+.+++.+.+.|.++.++ |.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~-~d~v~~l~~G~i~~~g~~~  246 (269)
T cd03294         173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRL-GDRIAIMKDGRLVQVGTPE  246 (269)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999998654 78999999999998877 6999999999999988764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-47  Score=347.03  Aligned_cols=223  Identities=22%  Similarity=0.351  Sum_probs=181.1

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCC--C
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLL--E  147 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~--~  147 (325)
                      .++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|     ++|+|.++|+++.  .
T Consensus         2 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~~~~~~G~i~~~g~~i~~~~   77 (253)
T PRK14267          2 KFAIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL--LELNEEARVEGEVRLFGRNIYSPD   77 (253)
T ss_pred             cceEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCcccCCCCceEEEECCEEccccc
Confidence            347999999999964  5799999999999999999999999999999999998  444     5999999999886  2


Q ss_pred             CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020520          148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF  224 (325)
Q Consensus       148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L  224 (325)
                      ...... +..+++++|++.+++..++.+++.......    ... ....+....+.++++.+++..   ...++.+. +|
T Consensus        78 ~~~~~~-~~~i~~~~q~~~~~~~~tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~L  150 (253)
T PRK14267         78 VDPIEV-RREVGMVFQYPNPFPHLTIYDNVAIGVKLN----GLV-KSKKELDERVEWALKKAALWDEVKDRLNDYPS-NL  150 (253)
T ss_pred             cChHHH-hhceeEEecCCccCCCCcHHHHHHHHHHhc----Ccc-CCHHHHHHHHHHHHHHcCCccchhhhhccChh-hC
Confidence            222222 236889999999888889998876543211    100 012223345667788888732   23456665 49


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++
T Consensus       151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~  228 (253)
T PRK14267        151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARV-SDYVAFLYLGKLIE  228 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhh-CCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999865 58999999999998877 69999999999999


Q ss_pred             EcCccH
Q 020520          305 TGDASI  310 (325)
Q Consensus       305 ~g~~~~  310 (325)
                      .|+++.
T Consensus       229 ~~~~~~  234 (253)
T PRK14267        229 VGPTRK  234 (253)
T ss_pred             eCCHHH
Confidence            988653

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-47  Score=350.23  Aligned_cols=221  Identities=22%  Similarity=0.325  Sum_probs=182.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+....+
T Consensus         5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~   82 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI--EKVKSGEIFYNNQAITDDNFEKLR   82 (269)
T ss_pred             CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHH
Confidence            568999999999975334699999999999999999999999999999999998  679999999999998765544333


Q ss_pred             hccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ..++|++|++. .++..++.+++.+....    .+   ....+....+.++++.+++. +..++.+.. ||||||||++
T Consensus        83 -~~i~~v~q~~~~~~~~~~v~~~~~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~  152 (269)
T PRK13648         83 -KHIGIVFQNPDNQFVGSIVKYDVAFGLEN----HA---VPYDEMHRRVSEALKQVDML-ERADYEPNA-LSGGQKQRVA  152 (269)
T ss_pred             -hheeEEEeChHHhcccccHHHHHHhhHHh----cC---CCHHHHHHHHHHHHHHcCCc-hhhhCCccc-CCHHHHHHHH
Confidence             35889999985 56666776665443211    11   11223344567788999986 566777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++++. . +|++++|++|++++.|+++
T Consensus       153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~-~-~d~i~~l~~G~i~~~g~~~  227 (269)
T PRK13648        153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM-E-ADHVIVMNKGTVYKEGTPT  227 (269)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh-c-CCEEEEEECCEEEEecCHH
Confidence            999999999999999999999999999999999998754 789999999999886 4 6999999999999998865

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-47  Score=351.34  Aligned_cols=221  Identities=27%  Similarity=0.378  Sum_probs=181.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH-HHHhh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP-EERSL  155 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~-~~~~~  155 (325)
                      +|+++||+++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++..... .....
T Consensus         1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (275)
T PRK13639          1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI--LKPTSGEVLIKGEPIKYDKKSLLEVR   77 (275)
T ss_pred             CEEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEECccccchHHHHH
Confidence            5889999999963 35699999999999999999999999999999999998  67999999999998852211 11123


Q ss_pred             ccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          156 AGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       156 ~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ..++|++|++. .+...++.+++......    .+   ....+...++.++++.+++. ++.++.+.+ |||||+||++|
T Consensus        78 ~~i~~v~q~~~~~~~~~tv~e~i~~~~~~----~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LS~Gq~qrv~l  148 (275)
T PRK13639         78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLN----LG---LSKEEVEKRVKEALKAVGME-GFENKPPHH-LSGGQKKRVAI  148 (275)
T ss_pred             hheEEEeeChhhhhccccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCc-hhhcCChhh-CCHHHHHHHHH
Confidence            45889999973 33345888887543211    11   12233345677889999996 567777765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~  223 (275)
T PRK13639        149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVY-ADKVYVMSDGKIIKEGTPKE  223 (275)
T ss_pred             HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999976689999999999998877 69999999999999998653

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=1.7e-47  Score=340.38  Aligned_cols=210  Identities=24%  Similarity=0.328  Sum_probs=175.3

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++  +.  .|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+..   +..
T Consensus         1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~~~~~---~~~   71 (211)
T cd03298           1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF--ETPQSGRVLINGVDVTAAPPA---DRP   71 (211)
T ss_pred             CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcCcCCHh---Hcc
Confidence            478999999963  33  399999999999999999999999999999998  679999999999998765432   245


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++..++.+++.......   ..   . ..+...++.++++.+++. +..++.+. +||||||||++||||
T Consensus        72 i~~~~q~~~~~~~~tv~enl~~~~~~~---~~---~-~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrv~ia~a  142 (211)
T cd03298          72 VSMLFQENNLFAHLTVEQNVGLGLSPG---LK---L-TAEDRQAIEVALARVGLA-GLEKRLPG-ELSGGERQRVALARV  142 (211)
T ss_pred             EEEEecccccCCCCcHHHHHhcccccc---cC---c-cHHHHHHHHHHHHHcCCH-HHHhCCcc-cCCHHHHHHHHHHHH
Confidence            889999999888889988876542110   00   0 112234577889999996 45667765 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|++++++ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus       143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~~  211 (211)
T cd03298         143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL-AQRVVFLDNGRIAAQG  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhh-hCEEEEEECCEEeecC
Confidence            99999999999999999999999999999998754 88999999999999887 6999999999998653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.8e-47  Score=381.35  Aligned_cols=224  Identities=25%  Similarity=0.372  Sum_probs=188.3

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++|++++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+.....+
T Consensus         3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~   78 (501)
T PRK10762          3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI--YTRDAGSILYLGKEVTFNGPKSSQE   78 (501)
T ss_pred             ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHHHh
Confidence            58999999999963  6799999999999999999999999999999999998  6799999999999986554433333


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+++++|++.+++.+++.+++.+...... ...  .....+...++.++++.+++. +..++.+.+ |||||||||+||
T Consensus        79 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~la  153 (501)
T PRK10762         79 AGIGIIHQELNLIPQLTIAENIFLGREFVN-RFG--RIDWKKMYAEADKLLARLNLR-FSSDKLVGE-LSIGEQQMVEIA  153 (501)
T ss_pred             CCEEEEEcchhccCCCcHHHHhhhcccccc-ccC--ccCHHHHHHHHHHHHHHcCCC-CCccCchhh-CCHHHHHHHHHH
Confidence            468999999988888999998865421100 000  111223345677889999996 556777765 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+.+|++|||||||+|||+.+++.++++|++++++|.|||+||||++++..+ ||++++|++|++++.|+++
T Consensus       154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~-~d~i~~l~~G~i~~~~~~~  226 (501)
T PRK10762        154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEI-CDDVTVFRDGQFIAEREVA  226 (501)
T ss_pred             HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEeCCEEEEecCcC
Confidence            999999999999999999999999999999999976788999999999999887 6999999999999988765

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.9e-47  Score=365.25  Aligned_cols=207  Identities=24%  Similarity=0.332  Sum_probs=176.8

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE----eCCCCCHHHH---hhccEEEeccC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE----NLLEMEPEER---SLAGLFMSFQS  164 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~----~i~~~~~~~~---~~~~i~~~~Q~  164 (325)
                      ..+|+|+||+|++||+++|+|+||||||||+|+|+|+  ++|++|+|.++|+    ++...+....   ++..++|+||+
T Consensus        37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl--~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~  114 (382)
T TIGR03415        37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL--NPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK  114 (382)
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence            4689999999999999999999999999999999998  7899999999997    4544444332   23469999999


Q ss_pred             CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCE
Q 020520          165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL  244 (325)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l  244 (325)
                      +.+++..|+.+|+.+.....    +   ....+...++.++++.+++. ++.++.+.+ |||||||||+|||||+.+|+|
T Consensus       115 ~~l~p~~Tv~eNi~~~~~~~----g---~~~~~~~~~a~e~le~vgL~-~~~~~~~~~-LSgGq~QRV~LARALa~~P~I  185 (382)
T TIGR03415       115 FALMPWLTVEENVAFGLEMQ----G---MPEAERRKRVDEQLELVGLA-QWADKKPGE-LSGGMQQRVGLARAFAMDADI  185 (382)
T ss_pred             CcCCCCCcHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999987653211    1   12234445678889999996 567777765 999999999999999999999


Q ss_pred             EEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          245 AILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       245 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||||++||+.++..+.+.|.++.++ ++|||+||||++++..+ +|+|++|++|++++.|+++.
T Consensus       186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l-~DrI~vl~~G~iv~~g~~~e  251 (382)
T TIGR03415       186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKI-GNRIAIMEGGRIIQHGTPEE  251 (382)
T ss_pred             EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEecCHHH
Confidence            9999999999999999999999999764 89999999999999887 69999999999999998753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.2e-47  Score=381.43  Aligned_cols=218  Identities=23%  Similarity=0.380  Sum_probs=188.8

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...+
T Consensus         8 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~   83 (510)
T PRK15439          8 APPLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI--VPPDSGTLEIGGNPCARLTPAKA   83 (510)
T ss_pred             CCceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHHH
Confidence            3458999999999964  5799999999999999999999999999999999998  67999999999999876665544


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      ++.+++|++|++.+++.+++.+++.+...       .    ..+...++.++++.+++. +..++.+.+ |||||||||+
T Consensus        84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~----~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~  150 (510)
T PRK15439         84 HQLGIYLVPQEPLLFPNLSVKENILFGLP-------K----RQASMQKMKQLLAALGCQ-LDLDSSAGS-LEVADRQIVE  150 (510)
T ss_pred             HhCCEEEEeccCccCCCCcHHHHhhcccc-------c----chHHHHHHHHHHHHcCCC-ccccCChhh-CCHHHHHHHH
Confidence            44568999999988888999888754321       0    112234577889999996 566777765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++++.++|++++++|.|||+||||++++..+ ||++++|++|++++.|+++
T Consensus       151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~g~~~  225 (510)
T PRK15439        151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQL-ADRISVMRDGTIALSGKTA  225 (510)
T ss_pred             HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEecChH
Confidence            99999999999999999999999999999999999977789999999999999887 6999999999999998765

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=7.8e-48  Score=342.97  Aligned_cols=211  Identities=26%  Similarity=0.312  Sum_probs=170.1

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL  158 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i  158 (325)
                      +++||+++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++.     .. +..+
T Consensus         1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~-----~~-~~~i   70 (213)
T cd03235           1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL--LKPTSGSIRVFGKPLE-----KE-RKRI   70 (213)
T ss_pred             CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCccHH-----HH-Hhhe
Confidence            36899999964  5799999999999999999999999999999999998  6799999999998753     12 2358


Q ss_pred             EEeccCCccC--CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          159 FMSFQSPVEI--PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       159 ~~~~Q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      +|++|++.++  ...++.+++.......   .........+...++.++++.+++. +..++.+.+ ||||||||++|||
T Consensus        71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~la~  145 (213)
T cd03235          71 GYVPQRRSIDRDFPISVRDVVLMGLYGH---KGLFRRLSKADKAKVDEALERVGLS-ELADRQIGE-LSGGQQQRVLLAR  145 (213)
T ss_pred             EEeccccccccCCCCcHHHHHHhccccc---cccccCCCHHHHHHHHHHHHHcCCH-HHHhCCccc-CCHHHHHHHHHHH
Confidence            8999998653  2368888876532110   0000001122334577789999996 566777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||++++|++| +++.|
T Consensus       146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l~~~-~~~~g  213 (213)
T cd03235         146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY-FDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEcCc-EeecC
Confidence            99999999999999999999999999999999876788999999999999887 6999999876 55543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=2.8e-47  Score=387.00  Aligned_cols=269  Identities=19%  Similarity=0.289  Sum_probs=207.9

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.++.....   .........++++|++++|++ ++++|+|+||+|++||.
T Consensus       294 ~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~-~~~il~~i~l~i~~Ge~  369 (592)
T PRK10790        294 LNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---DDRPLQSGRIDIDNVSFAYRD-DNLVLQNINLSVPSRGF  369 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---CccCCCCCeEEEEEEEEEeCC-CCceeeceeEEEcCCCE
Confidence            45677777778888999999999999887654332111   111112346999999999974 35799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+|+||||||||+++|+|+  ++|++|+|.+||.++..++....+. .+++++|++.+|++ |..+|+....      
T Consensus       370 iaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i~~~~~~~l~~-~i~~v~Q~~~lF~~-Ti~~NI~~~~------  439 (592)
T PRK10790        370 VALVGHTGSGKSTLASLLMGY--YPLTEGEIRLDGRPLSSLSHSVLRQ-GVAMVQQDPVVLAD-TFLANVTLGR------  439 (592)
T ss_pred             EEEECCCCCCHHHHHHHHhcc--cCCCCceEEECCEEhhhCCHHHHHh-heEEEccCCccccc-hHHHHHHhCC------
Confidence            999999999999999999998  8899999999999999888776543 58899999999986 8888875531      


Q ss_pred             cCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                          ..++++..+     .+.+.++.+..+.+..-..-+..||||||||++|||||+++|++||||||||+||+++++.+
T Consensus       440 ----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i  515 (592)
T PRK10790        440 ----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI  515 (592)
T ss_pred             ----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence                112222211     12233333322111111222346999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY  319 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~  319 (325)
                      .+.|+++.+ ++|+|+|||+++.+..  +|+|++|++|++++.|+++  ++++.++.
T Consensus       516 ~~~l~~~~~-~~tvIivtHr~~~l~~--~D~ii~l~~G~i~~~G~~~--~L~~~~~~  567 (592)
T PRK10790        516 QQALAAVRE-HTTLVVIAHRLSTIVE--ADTILVLHRGQAVEQGTHQ--QLLAAQGR  567 (592)
T ss_pred             HHHHHHHhC-CCEEEEEecchHHHHh--CCEEEEEECCEEEEEcCHH--HHHhCCCH
Confidence            999999864 5899999999988765  6999999999999999765  44555553

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-47  Score=352.79  Aligned_cols=223  Identities=25%  Similarity=0.345  Sum_probs=181.4

Q ss_pred             CCcEEEEEEEEEECCC----cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH
Q 020520           75 QPLLQVTGLTAVIAES----KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~----~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~  150 (325)
                      .++++++||+++|++.    .+.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++.....
T Consensus         2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~i~g~~i~~~~~   79 (280)
T PRK13633          2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LIPSEGKVYVDGLDTSDEEN   79 (280)
T ss_pred             CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEecccccc
Confidence            4589999999999642    25699999999999999999999999999999999998  67999999999998865332


Q ss_pred             HHHhhccEEEeccCCcc-CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          151 EERSLAGLFMSFQSPVE-IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      ....+..++++||++.. +...++.+++.+....    .+   ....+....+.++++.+++. ++.++.+.. ||||||
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LS~G~~  150 (280)
T PRK13633         80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN----LG---IPPEEIRERVDESLKKVGMY-EYRRHAPHL-LSGGQK  150 (280)
T ss_pred             HHHHhhheEEEecChhhhhccccHHHHHHhhHhh----cC---CCHHHHHHHHHHHHHHCCCH-hHhhCCccc-CCHHHH
Confidence            12123458899999742 2234666666543211    11   12233345677889999996 567777765 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++.+..  ||++++|++|++++.|++
T Consensus       151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~--~d~v~~l~~G~i~~~g~~  228 (280)
T PRK13633        151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE--ADRIIVMDSGKVVMEGTP  228 (280)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc--CCEEEEEECCEEEEecCH
Confidence            9999999999999999999999999999999999999999754 8999999999998864  699999999999999986


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       229 ~~  230 (280)
T PRK13633        229 KE  230 (280)
T ss_pred             HH
Confidence            53

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-47  Score=353.06  Aligned_cols=221  Identities=21%  Similarity=0.344  Sum_probs=184.3

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc---cEEEECCEeCCCCCHH
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE---GSVVFKGENLLEMEPE  151 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~---G~I~~~g~~i~~~~~~  151 (325)
                      ..+|+++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+  ++|++   |+|.++|+++...+..
T Consensus         3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~--~~p~~g~~G~i~i~g~~~~~~~~~   80 (282)
T PRK13640          3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL--LLPDDNPNSKITVDGITLTAKTVW   80 (282)
T ss_pred             CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc--cCCCCCCCcEEEECCEECCcCCHH
Confidence            458999999999964335699999999999999999999999999999999998  66777   8999999998765443


Q ss_pred             HHhhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          152 ERSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      ..+ ..++|+||++. .++..++.+++.+....    .   ....++..+++.++++.+++. +..++.+. .|||||+|
T Consensus        81 ~~~-~~ig~v~q~~~~~~~~~tv~enl~~~~~~----~---~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LS~G~~q  150 (282)
T PRK13640         81 DIR-EKVGIVFQNPDNQFVGATVGDDVAFGLEN----R---AVPRPEMIKIVRDVLADVGML-DYIDSEPA-NLSGGQKQ  150 (282)
T ss_pred             HHH-hheEEEEECHHHhhccCCHHHHHHhhHHh----C---CCCHHHHHHHHHHHHHHCCCh-hHhcCCcc-cCCHHHHH
Confidence            332 35889999984 56667888887543211    1   112334445677889999996 56777776 49999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++++. . ||++++|++|++++.|+++
T Consensus       151 rv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~-~d~i~~l~~G~i~~~g~~~  228 (282)
T PRK13640        151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-M-ADQVLVLDDGKLLAQGSPV  228 (282)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-h-CCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999998754 889999999999885 5 7999999999999999875

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-47  Score=380.92  Aligned_cols=224  Identities=25%  Similarity=0.325  Sum_probs=188.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC--CccEEEECCEeCCCCCHHH
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--~~G~I~~~g~~i~~~~~~~  152 (325)
                      .++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|  ++|+|.++|+++...+...
T Consensus         3 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~~~G~i~~~g~~~~~~~~~~   78 (506)
T PRK13549          3 EYLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV--YPHGTYEGEIIFEGEELQASNIRD   78 (506)
T ss_pred             CceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCCCeEEEECCEECCCCCHHH
Confidence            358999999999963  5799999999999999999999999999999999998  454  8999999999987665443


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      ..+..++|+||++.+++.+++.+++.+.....  ..+  .....+...++.++++.+++. +..++.+.+ |||||||||
T Consensus        79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGqkqrv  152 (506)
T PRK13549         79 TERAGIAIIHQELALVKELSVLENIFLGNEIT--PGG--IMDYDAMYLRAQKLLAQLKLD-INPATPVGN-LGLGQQQLV  152 (506)
T ss_pred             HHHCCeEEEEeccccCCCCcHHHHhhhccccc--ccC--CcCHHHHHHHHHHHHHHcCCC-CCcccchhh-CCHHHHHHH
Confidence            33456899999998888899999876542110  000  011223345677889999995 567777765 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||++||+.++..+.++|.+++++|.|||+||||++++..+ ||++++|++|+++..|+++
T Consensus       153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~~  228 (506)
T PRK13549        153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAI-SDTICVIRDGRHIGTRPAA  228 (506)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHh-cCEEEEEECCEEeeecccc
Confidence            999999999999999999999999999999999999976788999999999999887 6999999999999998875

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-47  Score=345.84  Aligned_cols=222  Identities=19%  Similarity=0.310  Sum_probs=179.3

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCCC
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLEM  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~~  148 (325)
                      ..++++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|     ++|+|.++|+++...
T Consensus         4 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~~~~~~G~i~~~g~~i~~~   79 (254)
T PRK14273          4 NEAIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM--NDLVEGIKIEGNVIYEGKNIYSN   79 (254)
T ss_pred             CCceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccCCcCCCCceEEEECCEecccc
Confidence            3458999999999964  5799999999999999999999999999999999998  444     589999999987532


Q ss_pred             C-HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCC
Q 020520          149 E-PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGF  224 (325)
Q Consensus       149 ~-~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~L  224 (325)
                      . .....+..++|++|++.++. .++.+++.+.....    +..  ...+....+.+.++.+++.   .+..++.+. +|
T Consensus        80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~L  151 (254)
T PRK14273         80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIH----GTK--DKKKLDEIVEQSLKKSALWNEVKDKLNTNAL-SL  151 (254)
T ss_pred             cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHHhCCchhhHHHHhCCcc-cC
Confidence            1 11122346899999988774 78988876543211    111  1222334566778888763   134566665 49


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      ||||||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+ +|++++|++|++++
T Consensus       152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~-~d~i~~l~~G~i~~  229 (254)
T PRK14273        152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRI-SDRTAFFLNGCIEE  229 (254)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-CCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999964 68999999999998877 69999999999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+++
T Consensus       230 ~g~~~  234 (254)
T PRK14273        230 ESSTD  234 (254)
T ss_pred             eCCHH
Confidence            98765

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=3e-47  Score=349.75  Aligned_cols=229  Identities=20%  Similarity=0.227  Sum_probs=184.2

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC---ccEEEECCEeCCCCC--
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEME--  149 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---~G~I~~~g~~i~~~~--  149 (325)
                      .++|+++||++.|++  +.+|+++||+|.+||+++|+||||||||||+++|+|+  ++|+   +|+|.++|+++....  
T Consensus         2 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~p~~~~~G~i~~~g~~~~~~~~~   77 (262)
T PRK09984          2 QTIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL--ITGDKSAGSHIELLGRTVQREGRL   77 (262)
T ss_pred             CcEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCCCceEEEECCEeccccccc
Confidence            358999999999963  6799999999999999999999999999999999998  4554   599999999875432  


Q ss_pred             --HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC-CCCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020520          150 --PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG-QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG  226 (325)
Q Consensus       150 --~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg  226 (325)
                        ........++|+||++.+++.+++.+++............ .......+....+.++++.+++. +..++.+.. |||
T Consensus        78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~  155 (262)
T PRK09984         78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVST-LSG  155 (262)
T ss_pred             chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccc-cCH
Confidence              1112234588999999888888998887653210000000 00000122335677889999996 567777765 999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      ||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .|.|||++|||++++..+ ||++++|++|++++.
T Consensus       156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~-~d~i~~l~~g~i~~~  234 (262)
T PRK09984        156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRY-CERIVALRQGHVFYD  234 (262)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999975 488999999999998877 699999999999999


Q ss_pred             cCccH
Q 020520          306 GDASI  310 (325)
Q Consensus       306 g~~~~  310 (325)
                      |+++.
T Consensus       235 g~~~~  239 (262)
T PRK09984        235 GSSQQ  239 (262)
T ss_pred             CCHHH
Confidence            98753

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=9.1e-47  Score=390.23  Aligned_cols=272  Identities=20%  Similarity=0.254  Sum_probs=204.9

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCC
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGE  106 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge  106 (325)
                      +..|+..+......++....+.+|+.+.++.+++........ .......++++||+|+|++. ++++|+|+||+|++||
T Consensus       430 l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge  508 (711)
T TIGR00958       430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLA-PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE  508 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCC
Confidence            345667777777888889999999998887554322111111 11223469999999999743 3579999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      +++|+||||||||||+++|+|+  ++|++|+|.+||+++.+++....+. .+++++|+|.+|.+ |..+|+..+      
T Consensus       509 ~vaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i~~~~~~~lr~-~i~~v~Q~~~lF~g-TIreNI~~g------  578 (711)
T TIGR00958       509 VVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPLVQYDHHYLHR-QVALVGQEPVLFSG-SVRENIAYG------  578 (711)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEHHhcCHHHHHh-hceEEecCcccccc-CHHHHHhcC------
Confidence            9999999999999999999998  8899999999999999888766543 48899999998874 788887543      


Q ss_pred             hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                         .++.++++..+.     +.+.++.+..+.+..-..-+.+||||||||++|||||+++|+|||||||||+||+++++.
T Consensus       579 ---~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~  655 (711)
T TIGR00958       579 ---LTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL  655 (711)
T ss_pred             ---CCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHH
Confidence               122222222221     222334332211111112234699999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +.+ ...  .+++|+|+|||+++.+..  +|+|++|++|+|++.|+++  +++++++.|
T Consensus       656 i~~-~~~--~~~~TvIiItHrl~~i~~--aD~IivL~~G~ive~Gt~~--eL~~~~~~y  707 (711)
T TIGR00958       656 LQE-SRS--RASRTVLLIAHRLSTVER--ADQILVLKKGSVVEMGTHK--QLMEDQGCY  707 (711)
T ss_pred             HHH-hhc--cCCCeEEEEeccHHHHHh--CCEEEEEECCEEEEeeCHH--HHHhCCCch
Confidence            998 322  347899999999988764  6999999999999999754  567777644

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-47  Score=352.22  Aligned_cols=223  Identities=21%  Similarity=0.300  Sum_probs=178.8

Q ss_pred             CcEEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC----C
Q 020520           76 PLLQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE----M  148 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~----~  148 (325)
                      ..|+++||+++|++..   ..+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++..    .
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~   82 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL--IISETGQTIVGDYAIPANLKKI   82 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEcccccccc
Confidence            4699999999996421   2599999999999999999999999999999999998  67999999999998742    1


Q ss_pred             CHHHHhhccEEEeccCCcc-CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH
Q 020520          149 EPEERSLAGLFMSFQSPVE-IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG  227 (325)
Q Consensus       149 ~~~~~~~~~i~~~~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG  227 (325)
                      ......+..++|++|++.. +...++.+++.+....    .+   ....+...++.++++.+++..+..++.+.. ||||
T Consensus        83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~-LS~G  154 (289)
T PRK13645         83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN----LG---ENKQEAYKKVPELLKLVQLPEDYVKRSPFE-LSGG  154 (289)
T ss_pred             ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCChhHhcCChhh-CCHH
Confidence            1112223458899999732 2234777777543211    11   112333345677888999843456777664 9999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |||||+|||||+.+|++|||||||+|||+.+++.++++|+++.++ |+|||+||||++++..+ ||++++|++|++++.|
T Consensus       155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~-~d~i~~l~~G~i~~~g  233 (289)
T PRK13645        155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRI-ADEVIVMHEGKVISIG  233 (289)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999998754 88999999999988877 6999999999999988


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       234 ~~~  236 (289)
T PRK13645        234 SPF  236 (289)
T ss_pred             CHH
Confidence            764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.5e-47  Score=349.58  Aligned_cols=220  Identities=28%  Similarity=0.385  Sum_probs=183.7

Q ss_pred             CcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           76 PLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ++|+++||+++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+....+
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~i~~~~~~~~~   80 (277)
T PRK13642          3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--FEEFEGKVKIDGELLTAENVWNLR   80 (277)
T ss_pred             ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCEEEECCEECCcCCHHHHh
Confidence            479999999999742 24599999999999999999999999999999999998  679999999999998755443332


Q ss_pred             hccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ..++|++|++. .+...++.+++......    .+   ....+..+++.++++.+++. ++.++.+. .|||||+||++
T Consensus        81 -~~i~~v~q~~~~~~~~~tv~eni~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrv~  150 (277)
T PRK13642         81 -RKIGMVFQNPDNQFVGATVEDDVAFGMEN----QG---IPREEMIKRVDEALLAVNML-DFKTREPA-RLSGGQKQRVA  150 (277)
T ss_pred             -cceEEEEECHHHhhccCCHHHHHHhhHHH----cC---CCHHHHHHHHHHHHHHCCCH-hHhhCCcc-cCCHHHHHHHH
Confidence             46889999984 56667888887553211    11   12233345677888999985 56777776 49999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+++.|+++.++ |.|||++|||++++. . ||++++|++|++++.|+++
T Consensus       151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~-~d~i~~l~~G~i~~~g~~~  225 (277)
T PRK13642        151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-S-SDRILVMKAGEIIKEAAPS  225 (277)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999765 899999999999986 4 7999999999999999864

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-46  Score=345.91  Aligned_cols=223  Identities=23%  Similarity=0.317  Sum_probs=179.8

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCC--
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEM--  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~--  148 (325)
                      ...+++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+...   .|++|+|.++|+++...  
T Consensus        10 ~~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~   87 (260)
T PRK10744         10 APSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ   87 (260)
T ss_pred             CCceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence            3568999999999964  5799999999999999999999999999999999998311   15899999999987532  


Q ss_pred             CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020520          149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS  225 (325)
Q Consensus       149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS  225 (325)
                      +.... +..++|+||++.+++ .++.+++.......    .  .....+...++.++++.+++..   +..++.+. +||
T Consensus        88 ~~~~~-~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS  158 (260)
T PRK10744         88 DIALL-RAKVGMVFQKPTPFP-MSIYDNIAFGVRLF----E--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGY-SLS  158 (260)
T ss_pred             chHHH-hcceEEEecCCccCc-CcHHHHHhhhHhhc----C--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCC-CCC
Confidence            22222 246889999998777 78888875542210    0  1112233345677888888731   33556665 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      |||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++.+..+ +|++++|++|++++.
T Consensus       159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~  236 (260)
T PRK10744        159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARC-SDYTAFMYLGELIEF  236 (260)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh-CCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999964 68999999999998877 699999999999999


Q ss_pred             cCcc
Q 020520          306 GDAS  309 (325)
Q Consensus       306 g~~~  309 (325)
                      |+++
T Consensus       237 g~~~  240 (260)
T PRK10744        237 GNTD  240 (260)
T ss_pred             CCHH
Confidence            8764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=7.5e-47  Score=345.27  Aligned_cols=222  Identities=25%  Similarity=0.347  Sum_probs=178.1

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe-----CCCCCH
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN-----LLEMEP  150 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~-----i~~~~~  150 (325)
                      ++|+++||+++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|++     +...+.
T Consensus         2 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~   77 (253)
T TIGR02323         2 PLLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR--LAPDHGTATYIMRSGAELELYQLSE   77 (253)
T ss_pred             ceEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEEecccccccccccCCH
Confidence            47999999999964  5699999999999999999999999999999999998  67999999999987     655444


Q ss_pred             HHHh---hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020520          151 EERS---LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS  225 (325)
Q Consensus       151 ~~~~---~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS  225 (325)
                      ..+.   ..++++++|++.  ++...++.+++......    .....  ..+....+.++++.+++.....++.+. .||
T Consensus        78 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~----~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~-~LS  150 (253)
T TIGR02323        78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA----IGARH--YGNIRAAAHDWLEEVEIDPTRIDDLPR-AFS  150 (253)
T ss_pred             HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHH----hcccc--hHHHHHHHHHHHHHcCCChhhhhcCch-hcC
Confidence            3321   245889999974  33445555555322110    00000  112234567789999985345677765 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||+||||++++..+ +|++++|++|++++
T Consensus       151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~-~d~~~~l~~G~i~~  229 (253)
T TIGR02323       151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLL-AQRLLVMQQGRVVE  229 (253)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998654 88999999999999877 69999999999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+++
T Consensus       230 ~~~~~  234 (253)
T TIGR02323       230 SGLTD  234 (253)
T ss_pred             ECCHH
Confidence            98764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.1e-48  Score=322.83  Aligned_cols=217  Identities=26%  Similarity=0.359  Sum_probs=186.8

Q ss_pred             CcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           76 PLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      .+|+++++++..+.+  ...+|++|+|.|++||.+|||||||||||||+-+++|+  ..|++|+|.+.|+++..++...+
T Consensus         5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL--d~~ssGeV~l~G~~L~~ldEd~r   82 (228)
T COG4181           5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL--DDPSSGEVRLLGQPLHKLDEDAR   82 (228)
T ss_pred             ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC--CCCCCceEEEcCcchhhcCHHHH
Confidence            378999999988653  34699999999999999999999999999999999998  57999999999999998887654


Q ss_pred             h---hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          154 S---LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       154 ~---~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      .   ...+++|||...+.|+++..+|+.........       ...+....+.+.|+++|+.. .+..++. +|||||+|
T Consensus        83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge-------~~~~~~~~A~~lL~~vGLg~-Rl~HyP~-qLSGGEQQ  153 (228)
T COG4181          83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGE-------SSADSRAGAKALLEAVGLGK-RLTHYPA-QLSGGEQQ  153 (228)
T ss_pred             HHhhccceeEEEEeeeccccchhhhhccchhhhcCC-------ccccHHHHHHHHHHHhCccc-ccccCcc-ccCchHHH
Confidence            3   35699999999999999999999877654321       11223455777899999974 4556666 49999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      ||+||||++..|+||+.||||.+||..+-++|.++|..+..+ |+|+|+||||+.++.+  |+|++.|.+|+|+++
T Consensus       154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R--c~R~~r~~~G~l~~~  227 (228)
T COG4181         154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR--CDRQLRLRSGRLVED  227 (228)
T ss_pred             HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh--hhheeeeecceeccC
Confidence            999999999999999999999999999999999999999755 9999999999998876  699999999999753

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.6e-46  Score=387.85  Aligned_cols=275  Identities=21%  Similarity=0.272  Sum_probs=214.0

Q ss_pred             eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020520           27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE  106 (325)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge  106 (325)
                      .+..|+..+......++....+.+|+.++++.+++.... ...........++++||+|+|+++++.+|+|+||+|++||
T Consensus       406 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~  484 (694)
T TIGR01846       406 RVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGE  484 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCC
Confidence            345678888888889999999999999988765443221 1111112234699999999997555679999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      .++|+|+||||||||+|+|+|+  ++|++|+|.+||.++..++....+. .+++++|++.+|++ |..+|+...      
T Consensus       485 ~vaivG~sGsGKSTL~~ll~g~--~~p~~G~I~idg~~i~~~~~~~~r~-~i~~v~q~~~lf~~-ti~eNi~~~------  554 (694)
T TIGR01846       485 FIGIVGPSGSGKSTLTKLLQRL--YTPQHGQVLVDGVDLAIADPAWLRR-QMGVVLQENVLFSR-SIRDNIALC------  554 (694)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEehhhCCHHHHHH-hCeEEccCCeehhh-hHHHHHhcC------
Confidence            9999999999999999999998  7899999999999999888776544 48899999988874 777877542      


Q ss_pred             hcCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          187 KLGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                         .++.+.++..+     .+.+.++.+..+.+..-..-+.+||||||||++|||||+++|++|||||||++||+.+++.
T Consensus       555 ---~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~  631 (694)
T TIGR01846       555 ---NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL  631 (694)
T ss_pred             ---CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHH
Confidence               12222233222     2334455553322222222344699999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +.+.|+++. +++|+|+|||+++.+..  +|+|++|++|++++.|+++  ++++..|.|
T Consensus       632 i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~ii~l~~G~i~~~g~~~--~l~~~~~~y  685 (694)
T TIGR01846       632 IMRNMREIC-RGRTVIIIAHRLSTVRA--CDRIIVLEKGQIAESGRHE--ELLALQGLY  685 (694)
T ss_pred             HHHHHHHHh-CCCEEEEEeCChHHHHh--CCEEEEEeCCEEEEeCCHH--HHHHcCChH
Confidence            999999985 46899999999998864  6999999999999999764  566666643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-46  Score=346.54  Aligned_cols=224  Identities=20%  Similarity=0.307  Sum_probs=178.7

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-C--CCCccEEEECCEeCCCCCH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-Y--EVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~--~p~~G~I~~~g~~i~~~~~  150 (325)
                      ..++++++|++++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+.. .  .|++|+|.++|+++...+.
T Consensus        18 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   95 (268)
T PRK14248         18 KEHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI   95 (268)
T ss_pred             CCceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence            4568999999999963  679999999999999999999999999999999999731 1  2689999999998864221


Q ss_pred             H-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020520          151 E-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG  226 (325)
Q Consensus       151 ~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg  226 (325)
                      . .....+++|++|++.+++. ++.+++......    ....  ........+.+.++.+++..   +..++.+. +|||
T Consensus        96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LSg  167 (268)
T PRK14248         96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKY----AGER--RKSVLDEIVEESLTKAALWDEVKDRLHSSAL-SLSG  167 (268)
T ss_pred             cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHHcCCCcchHHHHhcCcc-cCCH
Confidence            1 1123468999999988875 888887654321    1110  11122334566777777631   23456665 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |||||++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus       168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~-~d~v~~l~~G~i~~~~  245 (268)
T PRK14248        168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRV-SDRTAFFLNGDLVEYD  245 (268)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHh-CCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999865 58999999999988877 6999999999999998


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       246 ~~~  248 (268)
T PRK14248        246 QTE  248 (268)
T ss_pred             CHH
Confidence            765

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.5e-47  Score=369.11  Aligned_cols=224  Identities=27%  Similarity=0.402  Sum_probs=201.1

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++++++|++|+|++  .++|++|||++.+||++||+|+||||||||+|+|+|.  ++|++|+|.++|+.+...++.+.
T Consensus         5 ~~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv--~~p~~G~I~~~G~~~~~~sp~~A   80 (500)
T COG1129           5 TPPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV--YPPDSGEILIDGKPVAFSSPRDA   80 (500)
T ss_pred             ccceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc--ccCCCceEEECCEEccCCCHHHH
Confidence            3568999999999974  6899999999999999999999999999999999998  88999999999999988888887


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      ...||..++|+..++|++++.+|+.+.......   ..-++......++.++|+++++..+ .+..++. ||.||||.|+
T Consensus        81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~---~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~-LsiaqrQ~Ve  155 (500)
T COG1129          81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRR---FGLIDRKAMRRRARELLARLGLDID-PDTLVGD-LSIAQRQMVE  155 (500)
T ss_pred             HhCCcEEEeechhccCCccHHHHhhcccccccC---CCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhh-CCHHHHHHHH
Confidence            778999999999999999999998876543221   1224456677788889999998633 6677765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      |||||..+++|||||||||+|+....+.+++++++++++|.+||+|||.++++..+ ||||.||+||+.+.+.+
T Consensus       156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i-~DritVlRDG~~v~~~~  228 (500)
T COG1129         156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEI-ADRITVLRDGRVVGTRP  228 (500)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHh-cCEEEEEeCCEEeeecc
Confidence            99999999999999999999999999999999999999999999999999999998 69999999999998877

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.6e-47  Score=336.83  Aligned_cols=211  Identities=25%  Similarity=0.331  Sum_probs=176.6

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++||+++|+.    .++|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++.....  . +..
T Consensus         1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~--~-~~~   71 (213)
T TIGR01277         1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF--IEPASGSIKVNDQSHTGLAP--Y-QRP   71 (213)
T ss_pred             CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEcccCCh--h-ccc
Confidence            478999999952    57899999999999999999999999999999998  67999999999998865332  1 235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.+++.+++.+++.......   ..   . ..+...++.++++.+++. +..++.+. .|||||+||++||||
T Consensus        72 i~~v~q~~~~~~~~t~~en~~~~~~~~---~~---~-~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~lara  142 (213)
T TIGR01277        72 VSMLFQENNLFAHLTVRQNIGLGLHPG---LK---L-NAEQQEKVVDAAQQVGIA-DYLDRLPE-QLSGGQRQRVALARC  142 (213)
T ss_pred             eEEEeccCccCCCCcHHHHHHhHhhcc---CC---c-cHHHHHHHHHHHHHcCcH-HHhhCCcc-cCCHHHHHHHHHHHH
Confidence            889999999888889998876532110   00   0 111234567789999995 56677776 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      |+.+|++|||||||++||+.+++.+.+.|+++.++ +.|||+||||++++..+ +|++++|++|++++.|+
T Consensus       143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~-~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI-ASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh-cCeEEEEECCeEEEecC
Confidence            99999999999999999999999999999998754 78999999999998876 69999999999998874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=4.5e-47  Score=370.68  Aligned_cols=228  Identities=28%  Similarity=0.357  Sum_probs=187.1

Q ss_pred             CCcEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC--CCccEEEECCEeCCCCCH
Q 020520           75 QPLLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE--VTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~--p~~G~I~~~g~~i~~~~~  150 (325)
                      .++|+++||++.|...+  ..+++||||+|++||++||+|+|||||||+.++|+|+++..  ..+|+|.|+|+++..++.
T Consensus         3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~   82 (539)
T COG1123           3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE   82 (539)
T ss_pred             CceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence            34899999999997433  25999999999999999999999999999999999984322  248999999999988877


Q ss_pred             HHHh---hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccc-cccCCCCC
Q 020520          151 EERS---LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFL-NRNVNEGF  224 (325)
Q Consensus       151 ~~~~---~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~L  224 (325)
                      ..++   ...++++||+|.  +-|.+++.+.+.-.+....      ....++..+++.++|+.+++..... +++++ +|
T Consensus        83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~------~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPh-eL  155 (539)
T COG1123          83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG------KGSRAEARKRAVELLEQVGLPDPERRDRYPH-QL  155 (539)
T ss_pred             HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHcCCCChhhhccCCc-cc
Confidence            5532   245999999985  3344555544443332211      1125566788899999999975433 24665 59


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      ||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|+++|+||||+..+..+ ||||+||++|+++
T Consensus       156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~-aDrv~Vm~~G~iV  234 (539)
T COG1123         156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL-ADRVVVMYKGEIV  234 (539)
T ss_pred             CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHh-cCeEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999985 499999999999999998 7999999999999


Q ss_pred             EEcCccH
Q 020520          304 KTGDASI  310 (325)
Q Consensus       304 ~~g~~~~  310 (325)
                      +.|+++.
T Consensus       235 E~G~~~~  241 (539)
T COG1123         235 ETGPTEE  241 (539)
T ss_pred             EecCHHH
Confidence            9998763

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=345.64  Aligned_cols=225  Identities=22%  Similarity=0.315  Sum_probs=180.4

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCC-
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEM-  148 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~-  148 (325)
                      ...++|+++||+++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+...   .|++|+|.++|+++... 
T Consensus        15 ~~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~   92 (267)
T PRK14235         15 ATEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR   92 (267)
T ss_pred             CCCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence            34668999999999964  5799999999999999999999999999999999998321   14899999999988642 


Q ss_pred             -CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020520          149 -EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF  224 (325)
Q Consensus       149 -~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L  224 (325)
                       ....+ +..+++++|++.+++. ++.+++.+.....    +.. ....+....+.++++.+++..   ..+++.+. .|
T Consensus        93 ~~~~~~-~~~i~~v~q~~~~~~~-tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~L  164 (267)
T PRK14235         93 LDVVEL-RARVGMVFQKPNPFPK-SIYENVAYGPRIH----GLA-RSKAELDEIVETSLRKAGLWEEVKDRLHEPGT-GL  164 (267)
T ss_pred             cchHHH-hhceEEEecCCCCCCC-cHHHHHHHHHHhc----ccc-cchHHHHHHHHHHHHHcCCchhhhHHhhCCcc-cC
Confidence             22222 2458899999988874 8888876542111    110 011223345677888888842   23455565 49


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |||||||++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++.+..+ ||++++|++|++++
T Consensus       165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~-~d~v~~l~~G~i~~  242 (267)
T PRK14235        165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARV-SQRTAFFHLGNLVE  242 (267)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhh-CCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999865 68999999999999877 69999999999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+++
T Consensus       243 ~g~~~  247 (267)
T PRK14235        243 VGDTE  247 (267)
T ss_pred             eCCHH
Confidence            98764

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=341.79  Aligned_cols=221  Identities=21%  Similarity=0.301  Sum_probs=180.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEECCEeCCCCCHHHHhh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      +++++|+++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+.. ++|++|+|.++|+++...+.... +
T Consensus         2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~-~   78 (246)
T PRK14269          2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL-R   78 (246)
T ss_pred             ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH-h
Confidence            5889999999963  579999999999999999999999999999999999732 24789999999999876554332 3


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGqrQRv  232 (325)
                      ..++|+||++.+++ .++.+++.......    +... .......++.++++.+++..   +..++.+. +|||||||||
T Consensus        79 ~~i~~~~q~~~l~~-~tv~eni~~~~~~~----~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G~~qrv  151 (246)
T PRK14269         79 KNVGMVFQQPNVFV-KSIYENISYAPKLH----GMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNAL-ALSGGQQQRL  151 (246)
T ss_pred             hhEEEEecCCcccc-ccHHHHhhhHHhhc----Cccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCCcc-cCCHHHHHHH
Confidence            45889999998886 58888876542111    1100 11223345677889998842   23455555 4999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+ +|++++|++|++++.|+++
T Consensus       152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~  226 (246)
T PRK14269        152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRV-ADYTAFFHLGELIEFGESK  226 (246)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhh-CcEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999864 78999999999998877 6999999999999998765

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-47  Score=340.97  Aligned_cols=214  Identities=25%  Similarity=0.335  Sum_probs=179.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      |++++||+++|++  +  ..++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++......   ..
T Consensus         1 ~l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~---~~   71 (232)
T PRK10771          1 MLKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGF--LTPASGSLTLNGQDHTTTPPS---RR   71 (232)
T ss_pred             CeEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCeecCcCChh---hc
Confidence            5899999999963  2  2499999999999999999999999999999998  679999999999988654432   23


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|++|++.+++.+++.+++......   ..   .. ......++.++++.+++. +..++.+.. ||||||||++|||
T Consensus        72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~---~~---~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~lar  142 (232)
T PRK10771         72 PVSMLFQENNLFSHLTVAQNIGLGLNP---GL---KL-NAAQREKLHAIARQMGIE-DLLARLPGQ-LSGGQRQRVALAR  142 (232)
T ss_pred             cEEEEecccccccCCcHHHHHhccccc---cc---CC-CHHHHHHHHHHHHHcCcH-HHHhCCccc-CCHHHHHHHHHHH
Confidence            588999999888888998887543211   00   00 112234577889999996 567777765 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++..+ +|++++|++|++++.|+.+
T Consensus       143 al~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~g~i~~~g~~~  215 (232)
T PRK10771        143 CLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI-APRSLVVADGRIAWDGPTD  215 (232)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999998654 88999999999998876 6999999999999998764

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-48  Score=326.83  Aligned_cols=223  Identities=24%  Similarity=0.335  Sum_probs=190.9

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC------
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM------  148 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~------  148 (325)
                      .+.|+++|+.++|+.  ..+|++||++-++|+++.|||.|||||||+||||.=|  ..|+.|.|.++|+.+.-.      
T Consensus         4 ~~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L--E~P~~G~I~v~geei~~k~~~~G~   79 (256)
T COG4598           4 ENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL--EKPSAGSIRVNGEEIRLKRDKDGQ   79 (256)
T ss_pred             ccceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhh--cCCCCceEEECCeEEEeeeCCCCC
Confidence            457999999999974  6799999999999999999999999999999999987  679999999999876321      


Q ss_pred             ----CHHH--HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020520          149 ----EPEE--RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE  222 (325)
Q Consensus       149 ----~~~~--~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  222 (325)
                          +.++  +-+...+++||+..++..+|+.+|+....-.   .++   ..+.+..+++..+|.++|+. +..+.++..
T Consensus        80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvh---VLg---~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~  152 (256)
T COG4598          80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH---VLG---VSKAEAIERAEKYLAKVGIA-EKADAYPAH  152 (256)
T ss_pred             eeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchH---hhc---CCHHHHHHHHHHHHHHhCch-hhhhcCccc
Confidence                1122  2234688999999999999999987543211   122   23456677888899999996 456667765


Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                       |||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++++++|+|+++|||.+.++..+ ..+++++++|.|
T Consensus       153 -LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~V-ss~v~fLh~G~i  230 (256)
T COG4598         153 -LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDV-SSHVIFLHQGKI  230 (256)
T ss_pred             -cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhh-hhheEEeeccee
Confidence             999999999999999999999999999999999999999999999999999999999999999998 588999999999


Q ss_pred             EEEcCccH
Q 020520          303 IKTGDASI  310 (325)
Q Consensus       303 v~~g~~~~  310 (325)
                      -++|+|+.
T Consensus       231 EE~G~P~q  238 (256)
T COG4598         231 EEEGPPEQ  238 (256)
T ss_pred             cccCChHH
Confidence            99999863

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-46  Score=341.73  Aligned_cols=223  Identities=19%  Similarity=0.273  Sum_probs=178.5

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CCC--CccEEEECCEeCCCCCH-H
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEV--TEGSVVFKGENLLEMEP-E  151 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p--~~G~I~~~g~~i~~~~~-~  151 (325)
                      ++|+++|+++.|+.  +.+|+|+||+|++||+++|+|+||||||||+++|+|+.. .+|  ++|+|.++|+++...+. .
T Consensus         2 ~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14245          2 VKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV   79 (250)
T ss_pred             cEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence            58999999999964  579999999999999999999999999999999999621 233  58999999998864321 1


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGE  228 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGq  228 (325)
                      ...+.+++|++|++.+++ .++.+++.......    +..  ........+.++++.+++..   +..++.+. .|||||
T Consensus        80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G~  151 (250)
T PRK14245         80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVN----GVK--DNAFIRQRVEETLKGAALWDEVKDKLKESAF-ALSGGQ  151 (250)
T ss_pred             HHHhhheEEEecCCccCc-ccHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHHcCCCcchhhhhhCCcc-cCCHHH
Confidence            122346899999998776 58888876543211    110  11222345667788888742   23455555 599999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||++|||||+.+|++|||||||+|||+.+++.+.+.|+++. +++|||++|||++++..+ ||++++|++|++++.|++
T Consensus       152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~-~d~v~~l~~G~~~~~~~~  229 (250)
T PRK14245        152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARV-SDKTAFFYMGEMVEYDDT  229 (250)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhh-CCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999999985 468999999999998877 699999999999999976


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       230 ~~  231 (250)
T PRK14245        230 KK  231 (250)
T ss_pred             HH
Confidence            53

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-46  Score=341.68  Aligned_cols=224  Identities=25%  Similarity=0.343  Sum_probs=179.0

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCCH-
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEMEP-  150 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~~-  150 (325)
                      .++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+..+.|   ++|+|.++|+++..... 
T Consensus         3 ~~~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~   80 (252)
T PRK14239          3 EPILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD   80 (252)
T ss_pred             CceEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence            358999999999963  579999999999999999999999999999999999732235   59999999998854221 


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG  227 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG  227 (325)
                      ....+..+++++|++.+++ .++.+++......    .+..  ........+.++++.+++..   +..++.+. +||||
T Consensus        81 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G  152 (252)
T PRK14239         81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRL----KGIK--DKQVLDEAVEKSLKGASIWDEVKDRLHDSAL-GLSGG  152 (252)
T ss_pred             hHhhhhcEEEEecCCccCc-CcHHHHHHHHHHH----cCCC--cHHHHHHHHHHHHHHcCCchhHHHHHhcCcc-cCCHH
Confidence            1111245899999998877 7888887654221    1111  11222345666788887632   23456665 49999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      |||||+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+
T Consensus       153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~-~d~i~~l~~G~i~~~g~  230 (252)
T PRK14239        153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRI-SDRTGFFLDGDLIEYND  230 (252)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHh-CCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999864 58999999999988877 69999999999999987


Q ss_pred             ccH
Q 020520          308 ASI  310 (325)
Q Consensus       308 ~~~  310 (325)
                      .+.
T Consensus       231 ~~~  233 (252)
T PRK14239        231 TKQ  233 (252)
T ss_pred             HHH
Confidence            653

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-46  Score=345.57  Aligned_cols=223  Identities=21%  Similarity=0.311  Sum_probs=181.0

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCC
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLE  147 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~  147 (325)
                      ...++|+++||+++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++     |++|+|.++|.++..
T Consensus        17 ~~~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--~~p~~~~~~~G~i~~~g~~i~~   92 (276)
T PRK14271         17 AAAPAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--NDKVSGYRYSGDVLLGGRSIFN   92 (276)
T ss_pred             ccCcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--CCcCCCCCCceEEEECCEEccc
Confidence            34678999999999963  6799999999999999999999999999999999998  44     479999999998865


Q ss_pred             CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020520          148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF  224 (325)
Q Consensus       148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L  224 (325)
                      .......+..++|++|++.+++ .++.+++.......    .  .....+....+.+.++.+++..   +.+++.+. +|
T Consensus        93 ~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~-~L  164 (276)
T PRK14271         93 YRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH----K--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPF-RL  164 (276)
T ss_pred             cchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc----c--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcc-cC
Confidence            4322122345889999998887 78888876543211    0  0122333344566788888742   12445555 49


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      ||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||+||||++++..+ +|++++|++|++++
T Consensus       165 SgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~-~dri~~l~~G~i~~  242 (276)
T PRK14271        165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARI-SDRAALFFDGRLVE  242 (276)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-CCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999875 47999999999998887 69999999999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+++
T Consensus       243 ~g~~~  247 (276)
T PRK14271        243 EGPTE  247 (276)
T ss_pred             eCCHH
Confidence            98865

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=3e-46  Score=376.01  Aligned_cols=264  Identities=25%  Similarity=0.307  Sum_probs=205.9

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++....   .........++++|++|+|+++++++|+|+||+|++||+
T Consensus       270 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~  346 (544)
T TIGR01842       270 ALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEA  346 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCE
Confidence            34677777777888899999999999988654432111   111122346999999999975446899999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      ++|+||||||||||+++|+|+  ++|++|+|.++|.++...+....+ ..+++++|++.+|++ |..+|+....      
T Consensus       347 ~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~i~~~~~~~~~-~~i~~v~q~~~lf~~-ti~~Ni~~~~------  416 (544)
T TIGR01842       347 LAIIGPSGSGKSTLARLIVGI--WPPTSGSVRLDGADLKQWDRETFG-KHIGYLPQDVELFPG-TVAENIARFG------  416 (544)
T ss_pred             EEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEehhhCCHHHHh-hheEEecCCcccccc-cHHHHHhccC------
Confidence            999999999999999999998  789999999999999887765543 458899999999876 7888775321      


Q ss_pred             cCCCCCChHHHH-----HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFY-----AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                         +..+.++..     ..+.+.++.++.+.+..-...+..||||||||++|||||+++|++|||||||++||+++++.+
T Consensus       417 ---~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i  493 (544)
T TIGR01842       417 ---ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL  493 (544)
T ss_pred             ---CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHH
Confidence               112222222     123455666632212222222346999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      .+.|.++..+++|+|++||+++.+. . +|+|++|++|++++.|+++
T Consensus       494 ~~~l~~~~~~~~tvi~ith~~~~~~-~-~d~i~~l~~G~i~~~g~~~  538 (544)
T TIGR01842       494 ANAIKALKARGITVVVITHRPSLLG-C-VDKILVLQDGRIARFGERD  538 (544)
T ss_pred             HHHHHHHhhCCCEEEEEeCCHHHHH-h-CCEEEEEECCEEEeeCCHH
Confidence            9999998656789999999998765 3 6999999999999999865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.9e-46  Score=345.63  Aligned_cols=225  Identities=28%  Similarity=0.404  Sum_probs=183.2

Q ss_pred             CcEEEEEEEEEECC-------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC
Q 020520           76 PLLQVTGLTAVIAE-------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM  148 (325)
Q Consensus        76 ~~l~~~~ls~~y~~-------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~  148 (325)
                      ++|+++||++.|+.       .++.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~sG~i~~~g~~~~~~   79 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL--ESPSQGNVSWRGEPLAKL   79 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccc
Confidence            47999999999973       136799999999999999999999999999999999998  679999999999988765


Q ss_pred             CHHH--HhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020520          149 EPEE--RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF  224 (325)
Q Consensus       149 ~~~~--~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  224 (325)
                      +...  ..+..++|++|++.  +++..++.+++......    ..  .....+....+.++++.+++.....++.+.. |
T Consensus        80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~----~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-L  152 (268)
T PRK10419         80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH----LL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQ-L  152 (268)
T ss_pred             ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh----hc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCcc-C
Confidence            5432  12345899999973  45556777765432211    00  1112233346778899999854456777664 9


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      |||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ +.|||++|||++++..+ ||++++|++|+++
T Consensus       153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~-~d~i~~l~~G~i~  231 (268)
T PRK10419        153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF-CQRVMVMDNGQIV  231 (268)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHh-CCEEEEEECCEEe
Confidence            999999999999999999999999999999999999999999998754 78999999999999887 6999999999999


Q ss_pred             EEcCccH
Q 020520          304 KTGDASI  310 (325)
Q Consensus       304 ~~g~~~~  310 (325)
                      +.|+++.
T Consensus       232 ~~g~~~~  238 (268)
T PRK10419        232 ETQPVGD  238 (268)
T ss_pred             eeCChhh
Confidence            9987653

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=4.8e-46  Score=377.71  Aligned_cols=271  Identities=19%  Similarity=0.259  Sum_probs=200.2

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH  108 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~  108 (325)
                      ..|+..+......++....+..|..++++.++.................++++||+|+|++ ++++|+|+||++++||++
T Consensus       286 ~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~inl~i~~G~~v  364 (588)
T PRK13657        286 IGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN-SRQGVEDVSFEAKPGQTV  364 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCC-CCceecceeEEECCCCEE
Confidence            3455555555666677777777777766543322111111011112346999999999974 357999999999999999


Q ss_pred             EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020520          109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL  188 (325)
Q Consensus       109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~  188 (325)
                      +|+|+||||||||+|+|+|+  ++|++|+|.++|.++..++....+. .++|++|++.+|.+ |..+|+.+.        
T Consensus       365 ~IvG~sGsGKSTLl~lL~gl--~~p~~G~I~i~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~-Ti~~Ni~~~--------  432 (588)
T PRK13657        365 AIVGPTGAGKSTLINLLQRV--FDPQSGRILIDGTDIRTVTRASLRR-NIAVVFQDAGLFNR-SIEDNIRVG--------  432 (588)
T ss_pred             EEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEEhhhCCHHHHHh-heEEEecCcccccc-cHHHHHhcC--------
Confidence            99999999999999999998  8899999999999999888766543 48899999998875 778877543        


Q ss_pred             CCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020520          189 GQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA  263 (325)
Q Consensus       189 ~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~  263 (325)
                       .++.++++.+..     +.+.++.+..+.+..-..-+..||||||||++|||||+++|++||||||||+||+.+++.++
T Consensus       433 -~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~  511 (588)
T PRK13657        433 -RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK  511 (588)
T ss_pred             -CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence             122223332221     23334444222122112223359999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020520          264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG  318 (325)
Q Consensus       264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~  318 (325)
                      +.|.++. +++|+|+|||+++.+..  +|+|++|++|++++.|+.+  ++++.++
T Consensus       512 ~~l~~~~-~~~tvIiitHr~~~~~~--~D~ii~l~~G~i~~~g~~~--~l~~~~~  561 (588)
T PRK13657        512 AALDELM-KGRTTFIIAHRLSTVRN--ADRILVFDNGRVVESGSFD--ELVARGG  561 (588)
T ss_pred             HHHHHHh-cCCEEEEEEecHHHHHh--CCEEEEEECCEEEEeCCHH--HHHHCCC
Confidence            9999875 36899999999988764  6999999999999999754  4444444

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-46  Score=341.73  Aligned_cols=223  Identities=20%  Similarity=0.323  Sum_probs=179.9

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH-
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE-  151 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~-  151 (325)
                      ..|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+....   |++|+|.++|+++...+.. 
T Consensus         3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~   80 (252)
T PRK14256          3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP   80 (252)
T ss_pred             cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence            46899999999963  57999999999999999999999999999999999983211   3689999999988543211 


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGE  228 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGq  228 (325)
                      ...+..++++||++.+++..++.+++...+...    +..  ...+....+.+.++.+++..   +..++.+. .|||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G~  153 (252)
T PRK14256         81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN----GRV--NRSEADEIVESSLKRVALWDEVKDRLKSNAM-ELSGGQ  153 (252)
T ss_pred             HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc----CCC--CHHHHHHHHHHHHHHcCCchhhhHHhhCCcC-cCCHHH
Confidence            122346889999999888889988886543211    111  11223345677788888742   23445555 599999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|++
T Consensus       154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14256        154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARV-SDYTAFFYMGDLVECGET  231 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhh-CCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999975 57999999999998877 699999999999999976


Q ss_pred             c
Q 020520          309 S  309 (325)
Q Consensus       309 ~  309 (325)
                      +
T Consensus       232 ~  232 (252)
T PRK14256        232 K  232 (252)
T ss_pred             H
Confidence            5

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-47  Score=360.13  Aligned_cols=211  Identities=21%  Similarity=0.321  Sum_probs=178.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EER  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~  153 (325)
                      ||++ ||+++|++  +. + |+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++.....   ...
T Consensus         1 ~l~~-~l~k~~~~--~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl--~~p~~G~I~~~g~~~~~~~~~~~~~~   73 (352)
T PRK11144          1 MLEL-NFKQQLGD--LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGL--TRPQKGRIVLNGRVLFDAEKGICLPP   73 (352)
T ss_pred             CeEE-EEEEEeCC--EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccccch
Confidence            5788 99999964  32 3 89999999999999999999999999999998  67999999999998754211   011


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      .+..++|+||++.+|+.+++.+++.+....             ....++.++++.+++. +..++.+.+ |||||||||+
T Consensus        74 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-------------~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgGq~qRva  138 (352)
T PRK11144         74 EKRRIGYVFQDARLFPHYKVRGNLRYGMAK-------------SMVAQFDKIVALLGIE-PLLDRYPGS-LSGGEKQRVA  138 (352)
T ss_pred             hhCCEEEEcCCcccCCCCcHHHHHHhhhhh-------------hhHHHHHHHHHHcCCc-hhhhCCccc-CCHHHHHHHH
Confidence            124588999999999999999987654210             1123467788999996 567777765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+.+|++|||||||++||+.+++.+++.|+++.++ |.|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus       139 laraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~  215 (352)
T PRK11144        139 IGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRL-ADRVVVLEQGKVKAFGPLEE  215 (352)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHh-CCEEEEEeCCEEEEecCHHH
Confidence            999999999999999999999999999999999999765 88999999999999887 69999999999999998653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=382.83  Aligned_cols=226  Identities=26%  Similarity=0.336  Sum_probs=188.7

Q ss_pred             CCcEEEEEEEEEECCC---------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520           75 QPLLQVTGLTAVIAES---------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~---------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      .++|+++||++.|+..         .+.+|+|+||+|++||+++|+|+||||||||+|+|+|+  .+|++|+|.++|+++
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl--~~p~~G~I~~~g~~i  388 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL--VESQGGEIIFNGQRI  388 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCcEEEECCEEC
Confidence            4689999999999621         24699999999999999999999999999999999998  679999999999998


Q ss_pred             CCCCHHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC
Q 020520          146 LEMEPEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN  221 (325)
Q Consensus       146 ~~~~~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  221 (325)
                      ...+...+  .+..++|+||++  .+++.+++.+++.......    +.  ....+...++.++++.+++..+..++.+.
T Consensus       389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~~~~~L~~~gL~~~~~~~~~~  462 (623)
T PRK10261        389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH----GL--LPGKAAAARVAWLLERVGLLPEHAWRYPH  462 (623)
T ss_pred             CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc----CC--CCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence            76654321  234689999997  4778889988876543211    11  01223345677889999995456777776


Q ss_pred             CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      + |||||||||+|||||+.+|+||||||||++||+.++..++++|++++++ |.|||+||||++++..+ ||+|++|++|
T Consensus       463 ~-LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~-~dri~vl~~G  540 (623)
T PRK10261        463 E-FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERI-SHRVAVMYLG  540 (623)
T ss_pred             c-CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECC
Confidence            5 9999999999999999999999999999999999999999999999765 88999999999999887 6999999999


Q ss_pred             EEEEEcCccH
Q 020520          301 RIIKTGDASI  310 (325)
Q Consensus       301 ~iv~~g~~~~  310 (325)
                      +|++.|+++.
T Consensus       541 ~iv~~g~~~~  550 (623)
T PRK10261        541 QIVEIGPRRA  550 (623)
T ss_pred             EEEEecCHHH
Confidence            9999987653

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-46  Score=342.07  Aligned_cols=223  Identities=22%  Similarity=0.324  Sum_probs=179.7

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCC--CCH
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLE--MEP  150 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~--~~~  150 (325)
                      .+++++|++++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+....   |++|+|.++|+++..  ...
T Consensus         3 ~~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          3 KRIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             ccEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            37999999999964  57999999999999999999999999999999999983211   379999999998743  222


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG  227 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG  227 (325)
                      ... +..+++++|++.+++..++.+++.......    +.  ....+..+.+.++++.+++..   +..++.+. +||||
T Consensus        81 ~~~-~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~----~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G  152 (258)
T PRK14241         81 VAV-RRTIGMVFQRPNPFPTMSIRDNVVAGLKLN----GV--RNKKDLDELVEKSLRGANLWNEVKDRLDKPGG-GLSGG  152 (258)
T ss_pred             HHH-hcceEEEccccccCCCCcHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc-cCCHH
Confidence            222 346899999998888889998876543211    11  012233345667788888731   34556665 49999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe------CCE
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME------DGR  301 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~------~G~  301 (325)
                      |||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+ ||++++|+      +|+
T Consensus       153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~-~d~i~~l~~~~~~~~g~  230 (258)
T PRK14241        153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARV-SDQTAFFNLEATGKPGR  230 (258)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHh-CCEEEEEecccCCCCce
Confidence            99999999999999999999999999999999999999999864 58999999999998877 69999996      799


Q ss_pred             EEEEcCccH
Q 020520          302 IIKTGDASI  310 (325)
Q Consensus       302 iv~~g~~~~  310 (325)
                      +++.|+++.
T Consensus       231 i~~~~~~~~  239 (258)
T PRK14241        231 LVEIDDTEK  239 (258)
T ss_pred             EEecCCHHH
Confidence            999997653

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=1e-46  Score=338.93  Aligned_cols=218  Identities=25%  Similarity=0.411  Sum_probs=178.3

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++||++.|++  +++|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|.++...+...+
T Consensus         4 ~~~~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~   79 (225)
T PRK10247          4 NSPLLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL--ISPTSGTLLFEGEDISTLKPEIY   79 (225)
T ss_pred             CCceEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCeEEECCEEcCcCCHHHH
Confidence            3458999999999963  5799999999999999999999999999999999998  67999999999999876655433


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ...++|++|++.+++ .++.+++.......    ...   .  ...++.++++.+++.....++.+.+ |||||+|||+
T Consensus        80 -~~~i~~~~q~~~l~~-~tv~enl~~~~~~~----~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~~-LS~G~~qrv~  147 (225)
T PRK10247         80 -RQQVSYCAQTPTLFG-DTVYDNLIFPWQIR----NQQ---P--DPAIFLDDLERFALPDTILTKNIAE-LSGGEKQRIS  147 (225)
T ss_pred             -HhccEEEeccccccc-ccHHHHHHhHHhhc----CCC---h--HHHHHHHHHHHcCCChHHhcCCccc-CCHHHHHHHH
Confidence             246789999988876 48888876532111    110   1  1234567889999853456677764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEe-CCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIME-DGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~-~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+.++|+++.++ |.|||++|||++++. . ||++++|+ ++..+++|+.+
T Consensus       148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~-~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-H-ADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-h-CCEEEEEecccchHhhhhhc
Confidence            999999999999999999999999999999999998754 889999999999985 4 79999994 56666777543

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-46  Score=346.63  Aligned_cols=222  Identities=23%  Similarity=0.325  Sum_probs=181.0

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC--------ccEEEECCEeCCCC
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT--------EGSVVFKGENLLEM  148 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~--------~G~I~~~g~~i~~~  148 (325)
                      ||+++|++++|++  +.+|+++||+|++||+++|+||||||||||+|+|+|+  ++|+        +|+|.++|.++...
T Consensus         1 ml~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~--~~p~~~~~~~~~~G~i~~~g~~~~~~   76 (272)
T PRK13547          1 MLTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD--LTGGGAPRGARVTGDVTLNGEPLAAI   76 (272)
T ss_pred             CeEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCcccccccCCceEEEECCEEcccC
Confidence            5899999999964  5799999999999999999999999999999999998  5677        89999999998765


Q ss_pred             CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      +...++. .+++++|++..+...++.+++............  .. ..+....+.++++.+++. +..++.+.. |||||
T Consensus        77 ~~~~~~~-~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~  150 (272)
T PRK13547         77 DAPRLAR-LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAG--AL-THRDGEIAWQALALAGAT-ALVGRDVTT-LSGGE  150 (272)
T ss_pred             CHHHHHh-hcEEecccCCCCCCCcHHHHHhhcccccccccc--cC-CHHHHHHHHHHHHHcCcH-hhhcCCccc-CCHHH
Confidence            5444332 468899998755567888887553211000000  01 122234567788999996 456777664 99999


Q ss_pred             HHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          229 RKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       229 rQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      +|||+|||||+         .+|++|||||||+|||+.+++.+.+.|+++.++ |.|||+||||++++..+ ||++++|+
T Consensus       151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~-~d~i~~l~  229 (272)
T PRK13547        151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARH-ADRIAMLA  229 (272)
T ss_pred             HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEEE
Confidence            99999999999         499999999999999999999999999998765 88999999999998877 69999999


Q ss_pred             CCEEEEEcCcc
Q 020520          299 DGRIIKTGDAS  309 (325)
Q Consensus       299 ~G~iv~~g~~~  309 (325)
                      +|++++.|+++
T Consensus       230 ~G~i~~~g~~~  240 (272)
T PRK13547        230 DGAIVAHGAPA  240 (272)
T ss_pred             CCeEEEecCHH
Confidence            99999998865

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.5e-46  Score=337.04  Aligned_cols=209  Identities=21%  Similarity=0.318  Sum_probs=177.9

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|++++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++....   .  ..
T Consensus         1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~~~~~~~~~---~--~~   71 (223)
T TIGR03740         1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--LRPTSGEIIFDGHPWTRKD---L--HK   71 (223)
T ss_pred             CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEeccccc---c--cc
Confidence            478999999963  5799999999999999999999999999999999998  6799999999998864321   1  35


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++++||++.+++..++.+++......    .+.   .    ...+.++++.+++. +..++.+.. |||||+||++||||
T Consensus        72 ~~~~~q~~~~~~~~t~~~~~~~~~~~----~~~---~----~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~~rv~lara  138 (223)
T TIGR03740        72 IGSLIESPPLYENLTARENLKVHTTL----LGL---P----DSRIDEVLNIVDLT-NTGKKKAKQ-FSLGMKQRLGIAIA  138 (223)
T ss_pred             EEEEcCCCCccccCCHHHHHHHHHHH----cCC---C----HHHHHHHHHHcCCc-HHHhhhHhh-CCHHHHHHHHHHHH
Confidence            88999999888888988887554321    111   1    12456778899996 556776654 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+.+|++|||||||+|||+.+++.+++.|+++.++|.|||++|||++++..+ ||++++|++|++++.|++.
T Consensus       139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL-ADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh-cCEEEEEeCCEEEEecChh
Confidence            9999999999999999999999999999999976688999999999998877 6999999999999998765

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-46  Score=342.27  Aligned_cols=224  Identities=23%  Similarity=0.314  Sum_probs=179.4

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCC--
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEM--  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~--  148 (325)
                      ..++|+++|+++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+....|   ++|+|.++|+++...  
T Consensus         9 ~~~~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~   86 (259)
T PRK14274          9 KQEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV   86 (259)
T ss_pred             CCceEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence            3568999999999964  579999999999999999999999999999999999731113   689999999987532  


Q ss_pred             CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020520          149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS  225 (325)
Q Consensus       149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS  225 (325)
                      ..... +..++|++|++.+++. ++.+++.+....    .+.  ....+...++.++++.+++..   +.+++.+. +||
T Consensus        87 ~~~~~-~~~i~~v~q~~~~~~~-tv~enl~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~-~LS  157 (259)
T PRK14274         87 DLVEL-RKNIGMVFQKGNPFPQ-SIFDNVAYGPRI----HGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQAL-SLS  157 (259)
T ss_pred             CHHHH-hhceEEEecCCccccc-CHHHHHHhHHHh----cCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCCcc-cCC
Confidence            22222 2468999999988875 888887543211    111  112233345667788888742   23456665 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      ||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+||||++.+..+ ||++++|++|++++.
T Consensus       158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~-~d~i~~l~~G~i~~~  235 (259)
T PRK14274        158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARV-SDQTAFFYMGELVEC  235 (259)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHh-CCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999999865 68999999999998887 699999999999999


Q ss_pred             cCccH
Q 020520          306 GDASI  310 (325)
Q Consensus       306 g~~~~  310 (325)
                      |+++.
T Consensus       236 g~~~~  240 (259)
T PRK14274        236 NDTNK  240 (259)
T ss_pred             CCHHH
Confidence            98653

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=2.5e-46  Score=337.73  Aligned_cols=215  Identities=21%  Similarity=0.378  Sum_probs=182.2

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+..   ...
T Consensus         1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~---~~~   73 (232)
T cd03300           1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF--ETPTSGEILLDGKDITNLPPH---KRP   73 (232)
T ss_pred             CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCChh---hcc
Confidence            468999999964  5799999999999999999999999999999999998  678999999999988765432   245


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++.+++.+++.......    +   .........+.++++.+++. +..++.+. .|||||+||++||||
T Consensus        74 i~~~~q~~~~~~~~t~~~nl~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~lS~G~~qrl~lara  144 (232)
T cd03300          74 VNTVFQNYALFPHLTVFENIAFGLRLK----K---LPKAEIKERVAEALDLVQLE-GYANRKPS-QLSGGQQQRVAIARA  144 (232)
T ss_pred             eEEEecccccCCCCcHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCc-hhhcCChh-hCCHHHHHHHHHHHH
Confidence            889999998888888888876543211    1   11222334567788999996 56777776 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||+++++..+ +|++++|++|++++.|+.+
T Consensus       145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~i~~l~~G~~~~~~~~~  216 (232)
T cd03300         145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTM-SDRIAVMNKGKIQQIGTPE  216 (232)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCEEEEEECCEEEecCCHH
Confidence            99999999999999999999999999999998764 88999999999998876 6999999999999988654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=4.5e-46  Score=376.52  Aligned_cols=272  Identities=22%  Similarity=0.306  Sum_probs=207.3

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++.....  .........++++||+++|++.++++|+|+||+|++||+
T Consensus       283 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~  360 (571)
T TIGR02203       283 LIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGET  360 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCE
Confidence            467888888888899999999999998876544322111  111112346999999999975456799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      ++|+|+||||||||+++|+|+  ++|++|+|.++|.++..++....+ ..++|++|+|.+|.+ |..+|+.....     
T Consensus       361 v~IvG~sGsGKSTLl~lL~gl--~~~~~G~I~i~g~~i~~~~~~~~~-~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----  431 (571)
T TIGR02203       361 VALVGRSGSGKSTLVNLIPRF--YEPDSGQILLDGHDLADYTLASLR-RQVALVSQDVVLFND-TIANNIAYGRT-----  431 (571)
T ss_pred             EEEECCCCCCHHHHHHHHHhc--cCCCCCeEEECCEeHHhcCHHHHH-hhceEEccCcccccc-cHHHHHhcCCC-----
Confidence            999999999999999999998  789999999999999888776654 348899999998875 77777654310     


Q ss_pred             cCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                         .+.+.++..+     .+.+.+.++..+.+..-..-+..||||||||++||||++++|++||||||||+||..+++.+
T Consensus       432 ---~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i  508 (571)
T TIGR02203       432 ---EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV  508 (571)
T ss_pred             ---CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence               0222222221     12233333322111111122346999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG  318 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~  318 (325)
                      ++.|.++. +++|+|+|||+++.+..  ||+|++|++|++++.|+.+  ++++..+
T Consensus       509 ~~~L~~~~-~~~tiIiitH~~~~~~~--~D~ii~l~~g~i~~~g~~~--~l~~~~~  559 (571)
T TIGR02203       509 QAALERLM-QGRTTLVIAHRLSTIEK--ADRIVVMDDGRIVERGTHN--ELLARNG  559 (571)
T ss_pred             HHHHHHHh-CCCEEEEEehhhHHHHh--CCEEEEEeCCEEEeeCCHH--HHHHcCC
Confidence            99999885 45899999999987754  6999999999999999765  3454444

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-46  Score=340.05  Aligned_cols=224  Identities=21%  Similarity=0.302  Sum_probs=179.4

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~  151 (325)
                      .++++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+....   |++|+|.++|+++...+..
T Consensus         2 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   79 (251)
T PRK14270          2 KIKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD   79 (251)
T ss_pred             ccEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence            468999999999963  57999999999999999999999999999999999973111   3799999999998643221


Q ss_pred             -HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020520          152 -ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG  227 (325)
Q Consensus       152 -~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG  227 (325)
                       ...+..+++++|++.+++ .++.+++.+....    .+..  ...+...++.++++.+++..   +..++.+. .||||
T Consensus        80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~G  151 (251)
T PRK14270         80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI----HGIK--DKKELDKIVEWALKKAALWDEVKDDLKKSAL-KLSGG  151 (251)
T ss_pred             HHHHHhheEEEecCCCcCC-CcHHHHHHhHHHh----cCCC--cHHHHHHHHHHHHHHcCCchhhhhHhhCCcc-cCCHH
Confidence             122345889999998887 7888887643211    1110  11223345667788887631   23455665 49999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+
T Consensus       152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~-~d~v~~l~~G~i~~~~~  229 (251)
T PRK14270        152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRV-SDYTAFFLMGDLIEFNK  229 (251)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHh-cCEEEEEECCeEEEeCC
Confidence            99999999999999999999999999999999999999999875 58999999999998887 69999999999999987


Q ss_pred             ccH
Q 020520          308 ASI  310 (325)
Q Consensus       308 ~~~  310 (325)
                      ++.
T Consensus       230 ~~~  232 (251)
T PRK14270        230 TEK  232 (251)
T ss_pred             HHH
Confidence            653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-46  Score=373.17  Aligned_cols=222  Identities=24%  Similarity=0.339  Sum_probs=186.0

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+.....+
T Consensus         3 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~~~   78 (501)
T PRK11288          3 PYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN--YQPDAGSILIDGQEMRFASTTAALA   78 (501)
T ss_pred             ceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCCHHHHHh
Confidence            58999999999964  5799999999999999999999999999999999998  6799999999999986544433333


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|++|++.+++.+++.+++.......  ..+.  ....+...++.++++.+++. +..++.+.+ |||||||||+||
T Consensus        79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv~la  152 (501)
T PRK11288         79 AGVAIIYQELHLVPEMTVAENLYLGQLPH--KGGI--VNRRLLNYEAREQLEHLGVD-IDPDTPLKY-LSIGQRQMVEIA  152 (501)
T ss_pred             CCEEEEEechhccCCCCHHHHHHhccccc--ccCC--CCHHHHHHHHHHHHHHcCCC-CCcCCchhh-CCHHHHHHHHHH
Confidence            46899999998888889998876532110  0010  11233345677889999996 456677764 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||+||||++++..+ ||++++|++|+++..++.
T Consensus       153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~-~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFAL-CDAITVFKDGRYVATFDD  224 (501)
T ss_pred             HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEeecCc
Confidence            999999999999999999999999999999999977789999999999999887 699999999999877653

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.1e-47  Score=326.74  Aligned_cols=221  Identities=26%  Similarity=0.351  Sum_probs=186.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++||+++..  ++.+|+++||++.+||++||+||||||||||||.|+|.  ..|++|++.++|.++..+++.+..+.
T Consensus         1 mi~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe--l~p~~G~v~~~g~~l~~~~~~~lA~~   76 (259)
T COG4559           1 MIRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE--LSPDSGEVTLNGVPLNSWPPEELARH   76 (259)
T ss_pred             CeeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc--cCCCCCeEeeCCcChhhCCHHHHHHH
Confidence            689999999985  47899999999999999999999999999999999997  67999999999999999998876544


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      . +.++|+..+-..+++.+.+.++......  +.   ...+....+..++.+.++. .+..+.+.. |||||+|||.+||
T Consensus        77 r-aVlpQ~s~laFpFtv~eVV~mGr~p~~~--g~---~~~e~~~i~~~ala~~d~~-~la~R~y~~-LSGGEqQRVqlAR  148 (259)
T COG4559          77 R-AVLPQNSSLAFPFTVQEVVQMGRIPHRS--GR---EPEEDERIAAQALAATDLS-GLAGRDYRT-LSGGEQQRVQLAR  148 (259)
T ss_pred             h-hhcccCcccccceEHHHHHHhccccccc--CC---CchhhHHHHHHHHHHcChh-hhhccchhh-cCchHHHHHHHHH
Confidence            3 3558888776668999888876533211  11   1123334466778888885 567777764 9999999999999


Q ss_pred             HHHh------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVL------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +|++      ++++|+||||||+||..++..++++.++++++|..|+.|-||++++..+ ||||++|.+|++++.|+++.
T Consensus       149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~Y-aDrivll~~Grv~a~g~p~~  227 (259)
T COG4559         149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQY-ADRIVLLHQGRVIASGSPQD  227 (259)
T ss_pred             HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHh-hheeeeeeCCeEeecCCHHH
Confidence            9986      4458999999999999999999999999998889999999999999988 79999999999999999864

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=8.2e-46  Score=374.62  Aligned_cols=272  Identities=21%  Similarity=0.296  Sum_probs=205.6

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++....  ..........++++|++++|+.+++++|+|+||+|++|++
T Consensus       266 ~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~  343 (569)
T PRK10789        266 MIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQM  343 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCE
Confidence            34566677777788889999999999887654322111  1111112346999999999975446799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      ++|+||||||||||+++|+|+  ++|++|+|.++|+++...+....+ ..+++++|++.+|++ |..+|+...       
T Consensus       344 ~~ivG~sGsGKSTLl~ll~g~--~~p~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~lf~~-ti~~Ni~~~-------  412 (569)
T PRK10789        344 LGICGPTGSGKSTLLSLIQRH--FDVSEGDIRFHDIPLTKLQLDSWR-SRLAVVSQTPFLFSD-TVANNIALG-------  412 (569)
T ss_pred             EEEECCCCCCHHHHHHHHhcc--cCCCCCEEEECCEEHhhCCHHHHH-hheEEEccCCeeccc-cHHHHHhcC-------
Confidence            999999999999999999998  789999999999999887765544 348899999998875 888887542       


Q ss_pred             cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                        .++.+.++....     +.+.+..+..+.+..-...+..||||||||++|||||+++|++|||||||++||+++++.+
T Consensus       413 --~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i  490 (569)
T PRK10789        413 --RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI  490 (569)
T ss_pred             --CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence              112222222221     1122333322111111222346999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY  319 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~  319 (325)
                      .+.|+++. +++|+|+|||+++.+..  +|+|++|++|++++.|+.+  ++++..+.
T Consensus       491 ~~~l~~~~-~~~tii~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~--~l~~~~~~  542 (569)
T PRK10789        491 LHNLRQWG-EGRTVIISAHRLSALTE--ASEILVMQHGHIAQRGNHD--QLAQQSGW  542 (569)
T ss_pred             HHHHHHHh-CCCEEEEEecchhHHHc--CCEEEEEeCCEEEEecCHH--HHHHcCCh
Confidence            99999985 57899999999988764  6999999999999999754  45555553

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.5e-46  Score=343.39  Aligned_cols=220  Identities=20%  Similarity=0.321  Sum_probs=176.8

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCC-
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLE-  147 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~-  147 (325)
                      ..++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++     |++|+|.++|+++.. 
T Consensus        10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~~~p~~G~v~~~g~~i~~~   85 (269)
T PRK14259         10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM--NDLIEGCSLKGRVLFDGTDLYDP   85 (269)
T ss_pred             CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccccCCCCCceEEEECCEEcccc
Confidence            4568999999999964  5799999999999999999999999999999999998  33     689999999998753 


Q ss_pred             -CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCC
Q 020520          148 -MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEG  223 (325)
Q Consensus       148 -~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~  223 (325)
                       .+.... +..++|++|++.+++. ++.+++.+.....    +.   . .+..+.+.++++.+++.   .+..++.+. +
T Consensus        86 ~~~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~~----~~---~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~  154 (269)
T PRK14259         86 RVDPVEV-RRRIGMVFQQPNPFPK-SIYENIAFGARIN----GY---T-GDMDELVERSLRKAAVWDECKDKLNESGY-S  154 (269)
T ss_pred             cCCHHHH-hhceEEEccCCccchh-hHHHHHhhhhhhc----CC---c-HHHHHHHHHHHHHhCCcchhhhhhCCCcc-c
Confidence             223332 2358899999988874 8888876543211    11   1 11223445567777652   134566665 4


Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC----
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED----  299 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~----  299 (325)
                      |||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+ ||++++|++    
T Consensus       155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~-~d~i~~l~~~~~~  232 (269)
T PRK14259        155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRV-SDMTAFFNAEEVE  232 (269)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-cCEEEEEeccccc
Confidence            999999999999999999999999999999999999999999999854 68999999999999887 699999996    


Q ss_pred             -------CEEEEEcCccH
Q 020520          300 -------GRIIKTGDASI  310 (325)
Q Consensus       300 -------G~iv~~g~~~~  310 (325)
                             |++++.|+++.
T Consensus       233 ~~~~g~~g~~~~~~~~~~  250 (269)
T PRK14259        233 GGSGGKVGYLVEFNETKK  250 (269)
T ss_pred             cccccccceEEEeCCHHH
Confidence                   67899998753

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.1e-46  Score=340.75  Aligned_cols=214  Identities=24%  Similarity=0.360  Sum_probs=171.1

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|+.+++++|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+....+ ..
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~-~~   77 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--YVPENGRVLVDGHDLALADPAWLR-RQ   77 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCeehHhcCHHHHh-hc
Confidence            478999999964346799999999999999999999999999999999998  679999999999988655544332 35


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERL--SMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      +++++|++.+++ .++.+++.....      .   .......     ..+.+.++.+  ++. ..+++.+. +|||||||
T Consensus        78 i~~~~q~~~~~~-~tv~~nl~~~~~------~---~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~-~LSgG~~q  145 (237)
T cd03252          78 VGVVLQENVLFN-RSIRDNIALADP------G---MSMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGA-GLSGGQRQ  145 (237)
T ss_pred             EEEEcCCchhcc-chHHHHhhccCC------C---CCHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCC-cCCHHHHH
Confidence            889999987764 588877654210      0   0011111     1233445555  332 23455555 59999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ |.|||++|||++++. . ||++++|++|++++.|+++
T Consensus       146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~-~-~d~v~~l~~G~i~~~~~~~  221 (237)
T cd03252         146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVK-N-ADRIIVMEKGRIVEQGSHD  221 (237)
T ss_pred             HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEEcCHH
Confidence            99999999999999999999999999999999999999864 889999999999985 4 6999999999999998764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-46  Score=338.61  Aligned_cols=221  Identities=23%  Similarity=0.371  Sum_probs=178.3

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCCCCH
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~~~~  150 (325)
                      ++|+++|+++.|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+  ++     |++|+|.++|.++...+.
T Consensus         2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~~~~~~~~~G~i~i~g~~~~~~~~   77 (250)
T PRK14262          2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM--NDHIPGFRVEGKIYFKGQDIYDPQL   77 (250)
T ss_pred             ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc--ccCCCCCCcceEEEECCEEcccchh
Confidence            47999999999963  5799999999999999999999999999999999998  34     389999999998764221


Q ss_pred             H-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020520          151 E-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG  226 (325)
Q Consensus       151 ~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg  226 (325)
                      . ...+..++++||++.+++ .++.+++.......    +..  ........+.+.++.+++..   ...++.+. +|||
T Consensus        78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~----~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~  149 (250)
T PRK14262         78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIH----GVK--SKHKLDRIVEESLKKAALWDEVKSELNKPGT-RLSG  149 (250)
T ss_pred             hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHHcCCCchhHHHHhCChh-hcCH
Confidence            1 122345889999998877 78888876543211    111  11222344566778888742   23556665 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++.+..+ +|++++|++|+++..|
T Consensus       150 Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~-~d~i~~l~~G~i~~~g  227 (250)
T PRK14262        150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRI-ADYIAFMYRGELIEYG  227 (250)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHh-CCEEEEEECCEEEEec
Confidence            999999999999999999999999999999999999999999865 68999999999988877 6999999999999999


Q ss_pred             CccH
Q 020520          307 DASI  310 (325)
Q Consensus       307 ~~~~  310 (325)
                      +++.
T Consensus       228 ~~~~  231 (250)
T PRK14262        228 PTRE  231 (250)
T ss_pred             CHHH
Confidence            7653

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=2.4e-46  Score=333.79  Aligned_cols=209  Identities=25%  Similarity=0.347  Sum_probs=172.3

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHHh
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EERS  154 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~~  154 (325)
                      +.+ ||+++|++  +.+  |+||+|++ |+++|+||||||||||+++|+|+  ++|++|+|.++|.++.....   ....
T Consensus         2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~   73 (214)
T cd03297           2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL--EKPDGGTIVLNGTVLFDSRKKINLPPQ   73 (214)
T ss_pred             cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEecccccchhhhhhH
Confidence            455 99999975  444  99999999 99999999999999999999998  67999999999998753221   1111


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|++|++.+++..++.+++......    .     .......++.++++.+++. +..++.+.+ ||||||||++|
T Consensus        74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~----~-----~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~l  142 (214)
T cd03297          74 QRKIGLVFQQYALFPHLNVRENLAFGLKR----K-----RNREDRISVDELLDLLGLD-HLLNRYPAQ-LSGGEKQRVAL  142 (214)
T ss_pred             hhcEEEEecCCccCCCCCHHHHHHHHHhh----C-----CHHHHHHHHHHHHHHcCCH-hHhhcCccc-CCHHHHHHHHH
Confidence            23588999999888888988887654211    0     1122234567789999996 456677664 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||||+.+|++|||||||+|||+.+++.+.++|++++++ |.|||++|||++++..+ +|++++|++|++++.|
T Consensus       143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g  214 (214)
T cd03297         143 ARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL-ADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHh-cCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999765 88999999999998877 6999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=1.1e-45  Score=374.66  Aligned_cols=274  Identities=19%  Similarity=0.236  Sum_probs=203.9

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.++.................++++||+|+|++ ++++|+|+||+|++||+
T Consensus       285 l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~l~~i~~~i~~G~~  363 (585)
T TIGR01192       285 LIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFAN-SSQGVFDVSFEAKAGQT  363 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCC-CCccccceeEEEcCCCE
Confidence            34566667777777788888888888776643321111110011112346999999999974 35689999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      ++|+||||||||||+++|+|+  ++|++|+|.++|.++...+....+ ..+++++|++.+|+ .|..+|+...       
T Consensus       364 ~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~lf~-~ti~~Ni~~~-------  432 (585)
T TIGR01192       364 VAIVGPTGAGKTTLINLLQRV--YDPTVGQILIDGIDINTVTRESLR-KSIATVFQDAGLFN-RSIRENIRLG-------  432 (585)
T ss_pred             EEEECCCCCCHHHHHHHHccC--CCCCCCEEEECCEEhhhCCHHHHH-hheEEEccCCccCc-ccHHHHHhcC-------
Confidence            999999999999999999998  789999999999999887766544 34889999998886 4788877543       


Q ss_pred             cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                        .++.+.++....     +.+.+..+....+..-...+..||||||||++|||||+++|++|||||||++||+.+++.+
T Consensus       433 --~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i  510 (585)
T TIGR01192       433 --REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV  510 (585)
T ss_pred             --CCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence              112222222222     2223333321111111222346999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      .+.|.++. +++|+|+|||+++.+..  +|+|++|++|++++.|+.+  ++++.+|.|
T Consensus       511 ~~~l~~~~-~~~tvI~isH~~~~~~~--~d~i~~l~~G~i~~~g~~~--~l~~~~~~y  563 (585)
T TIGR01192       511 KNAIDALR-KNRTTFIIAHRLSTVRN--ADLVLFLDQGRLIEKGSFQ--ELIQKDGRF  563 (585)
T ss_pred             HHHHHHHh-CCCEEEEEEcChHHHHc--CCEEEEEECCEEEEECCHH--HHHHCCChH
Confidence            99999885 47899999999998864  6999999999999999754  555666543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=3.5e-46  Score=335.45  Aligned_cols=217  Identities=25%  Similarity=0.305  Sum_probs=176.1

Q ss_pred             cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH
Q 020520           77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~  151 (325)
                      .+.++|++++|++.  .+++|+|+||+|++||+++|+||||||||||+|+|+|+  ++   |++|+|.++|+++..   .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~--~~~~~~~~G~i~~~g~~~~~---~   77 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR--VEGGGTTSGQILFNGQPRKP---D   77 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc--cCCCCCCceEEEECCEECCh---H
Confidence            57899999999754  26899999999999999999999999999999999998  56   899999999998742   2


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHH-HHHhcCCccccccccCCCCCChHHHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYP-KLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                       ..+.++++++|++.+++.+++.+++.+.....    .............+.+ .++.+++. +..++.+. .|||||+|
T Consensus        78 -~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~q  150 (226)
T cd03234          78 -QFQKCVAYVRQDDILLPGLTVRETLTYTAILR----LPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVK-GISGGERR  150 (226)
T ss_pred             -HhcccEEEeCCCCccCcCCcHHHHHHHHHHhh----cccccchHHHHHHHHHHHHHhhcch-hhhccccc-CcCHHHHH
Confidence             22346889999999998899999886543211    0000011111123344 67888875 45566665 49999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh-hHHhhhCCcEEEEEeCCEEEEEc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYR-RLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~-~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+++.|+|++||++ +.+..+ +|++++|++|++++.|
T Consensus       151 rl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~-~d~i~~l~~G~i~~~g  226 (226)
T cd03234         151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRL-FDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHh-CCEEEEEeCCEEEecC
Confidence            99999999999999999999999999999999999999876688999999998 467776 6999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=2.3e-46  Score=330.81  Aligned_cols=190  Identities=59%  Similarity=0.998  Sum_probs=161.1

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+..+.|++|+|.++|+++...+...+.+..
T Consensus         1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~   78 (200)
T cd03217           1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG   78 (200)
T ss_pred             CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence            478999999963  579999999999999999999999999999999999732368999999999999876654443445


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.+++..++.+++                             +          . ....|||||+||++||||
T Consensus        79 i~~v~q~~~~~~~~~~~~~l-----------------------------~----------~-~~~~LS~G~~qrv~lara  118 (200)
T cd03217          79 IFLAFQYPPEIPGVKNADFL-----------------------------R----------Y-VNEGFSGGEKKRNEILQL  118 (200)
T ss_pred             EEEeecChhhccCccHHHHH-----------------------------h----------h-ccccCCHHHHHHHHHHHH
Confidence            88999998776654443221                             0          0 112499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh-hCCcEEEEEeCCEEEEEcCccH
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF-IKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~-~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |+.+|++|||||||++||+.+++.+.+.|.++++++.|||++||+++.+.. + +|++++|++|++++.|+.+.
T Consensus       119 l~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~-~d~i~~l~~G~i~~~~~~~~  191 (200)
T cd03217         119 LLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIK-PDRVHVLYDGRIVKSGDKEL  191 (200)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhh-CCEEEEEECCEEEEEccHHH
Confidence            999999999999999999999999999999987668899999999998876 4 69999999999999996543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.2e-46  Score=344.66  Aligned_cols=221  Identities=21%  Similarity=0.348  Sum_probs=178.2

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCC--
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEM--  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~--  148 (325)
                      ..++|+++||+++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+...   .|++|+|.++|+++...  
T Consensus        36 ~~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~  113 (285)
T PRK14254         36 GETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV  113 (285)
T ss_pred             CCceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence            4678999999999964  5799999999999999999999999999999999998321   16899999999987532  


Q ss_pred             CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020520          149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS  225 (325)
Q Consensus       149 ~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS  225 (325)
                      +.... +..++|++|++.+++. ++.+++......    .+.   . .+...++.++++.+++..   +.+++.+. +||
T Consensus       114 ~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~---~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-~LS  182 (285)
T PRK14254        114 DPVAL-RRRIGMVFQKPNPFPK-SIYDNVAYGLKI----QGY---D-GDIDERVEESLRRAALWDEVKDQLDSSGL-DLS  182 (285)
T ss_pred             chHhh-hccEEEEecCCccCcC-CHHHHHHHHHHH----cCC---c-HHHHHHHHHHHHHcCCCchhHHHHhCCcc-cCC
Confidence            22222 3468899999988775 888887654321    111   1 122345677888888742   24566665 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEE-EEeCCEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH-IMEDGRIIK  304 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~-vl~~G~iv~  304 (325)
                      |||||||+|||||+.+|+||||||||+|||+.+++.+.++|++++++ .|||++|||++++..+ +|+++ +|++|++++
T Consensus       183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~-~dri~v~l~~G~i~~  260 (285)
T PRK14254        183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARI-SDKTAVFLTGGELVE  260 (285)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhh-cCEEEEEeeCCEEEE
Confidence            99999999999999999999999999999999999999999999764 7999999999999887 68865 579999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+++
T Consensus       261 ~g~~~  265 (285)
T PRK14254        261 FDDTD  265 (285)
T ss_pred             eCCHH
Confidence            98764

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.4e-46  Score=338.32  Aligned_cols=220  Identities=23%  Similarity=0.348  Sum_probs=177.2

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCCCCH
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~~~~  150 (325)
                      ++|+++|++++|+.  +++|+++||+|++||+++|+|+||||||||+++|+|+  ++     |++|+|.++|+++.....
T Consensus         3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~p~~~~~G~v~i~g~~~~~~~~   78 (251)
T PRK14251          3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM--NDDIENIKITGEIKFEGQNIYGSKM   78 (251)
T ss_pred             ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--cccccCCCcceEEEECCEEcccccc
Confidence            47999999999964  5799999999999999999999999999999999998  33     479999999998753221


Q ss_pred             H-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020520          151 E-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG  226 (325)
Q Consensus       151 ~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg  226 (325)
                      . ...+..+++++|++.+++ .++.+++......    .+..  ........+.++++.+++..   ..+++.+. +|||
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~  150 (251)
T PRK14251         79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKI----AGVK--DKELIDQRVEESLKQAAIWKETKDNLDRNAQ-AFSG  150 (251)
T ss_pred             hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHH----cCCC--CHHHHHHHHHHHHHHcCCCcchHHHhccChh-hCCH
Confidence            1 122346889999998776 6888887654321    1111  11122344566778888731   23455555 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||+||||++++..+ +|++++|++|++++.|
T Consensus       151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~-~d~i~~l~~G~i~~~~  228 (251)
T PRK14251        151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRI-SDQTAFLMNGDLIEAG  228 (251)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhh-cCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999854 58999999999998887 6999999999999998


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +.+
T Consensus       229 ~~~  231 (251)
T PRK14251        229 PTE  231 (251)
T ss_pred             CHH
Confidence            765

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-46  Score=357.98  Aligned_cols=211  Identities=22%  Similarity=0.309  Sum_probs=177.1

Q ss_pred             EEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHHhhccE
Q 020520           82 GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EERSLAGL  158 (325)
Q Consensus        82 ~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~~~~~i  158 (325)
                      ||+++|++  +. + ++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++.....   ....+..+
T Consensus         4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl--~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i   77 (354)
T TIGR02142         4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL--TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI   77 (354)
T ss_pred             EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECccCccccccchhhCCe
Confidence            89999964  33 5 99999999999999999999999999999998  67999999999998854321   01112458


Q ss_pred             EEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH
Q 020520          159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA  238 (325)
Q Consensus       159 ~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL  238 (325)
                      +|+||++.+|+.+++.+++.+....    .     ...+...++.++++.+++. +..++.+.+ |||||||||+|||||
T Consensus        78 ~~v~q~~~l~~~~tv~enl~~~~~~----~-----~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGqkqRvalAraL  146 (354)
T TIGR02142        78 GYVFQEARLFPHLSVRGNLRYGMKR----A-----RPSERRISFERVIELLGIG-HLLGRLPGR-LSGGEKQRVAIGRAL  146 (354)
T ss_pred             EEEecCCccCCCCcHHHHHHHHhhc----c-----ChhHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHHHHHHH
Confidence            8999999999999999988654321    0     0122234577889999996 567777765 999999999999999


Q ss_pred             HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +.+|++|||||||+|||+.+++.+++.|+++.++ |.|||+||||++++..+ +|++++|++|++++.|+++.
T Consensus       147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~  218 (354)
T TIGR02142       147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRL-ADRVVVLEDGRVAAAGPIAE  218 (354)
T ss_pred             HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEeCCEEEEECCHHH
Confidence            9999999999999999999999999999999765 88999999999998877 69999999999999997653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-46  Score=360.03  Aligned_cols=271  Identities=23%  Similarity=0.301  Sum_probs=200.5

Q ss_pred             hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCC-CCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020520           30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSS-DGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH  108 (325)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~  108 (325)
                      ...+|+..++.-|.+...++.-..+.+...+....... ..+.......|+++||++.|++ ++++|+++||+|++||.+
T Consensus       303 qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~dV~f~y~~-k~~iL~gvsf~I~kGekV  381 (591)
T KOG0057|consen  303 QLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFSYGP-KRKVLKGVSFTIPKGEKV  381 (591)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEEeeEEEeCC-CCceecceeEEecCCCEE
Confidence            34456666666666666665555554432221111111 1111223345999999999985 456999999999999999


Q ss_pred             EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020520          109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL  188 (325)
Q Consensus       109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~  188 (325)
                      ||+|+|||||||++|+|.++  +. ++|+|++||+++...+....++ .|++|||+..+|.+ |+..|+.         +
T Consensus       382 aIvG~nGsGKSTilr~LlrF--~d-~sG~I~IdG~dik~~~~~SlR~-~Ig~VPQd~~LFnd-TIl~NI~---------Y  447 (591)
T KOG0057|consen  382 AIVGSNGSGKSTILRLLLRF--FD-YSGSILIDGQDIKEVSLESLRQ-SIGVVPQDSVLFND-TILYNIK---------Y  447 (591)
T ss_pred             EEECCCCCCHHHHHHHHHHH--hc-cCCcEEECCeeHhhhChHHhhh-heeEeCCcccccch-hHHHHhh---------c
Confidence            99999999999999999998  55 8999999999999888766543 48999999988864 5555553         3


Q ss_pred             CCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020520          189 GQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA  263 (325)
Q Consensus       189 ~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~  263 (325)
                      +.+.++.++..+     .+.+.+.+++-+....-...+..|||||||||+||||++.+|+|+++|||||+||.+++++++
T Consensus       448 Gn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~  527 (591)
T KOG0057|consen  448 GNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREIL  527 (591)
T ss_pred             CCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHH
Confidence            444444444332     233445555433222222333359999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +.+.+. ..++|+|+|-||++++..  +|+|+++++|++.+.|+.+  +++...+++
T Consensus       528 ~~i~~~-~~~rTvI~IvH~l~ll~~--~DkI~~l~nG~v~e~gth~--ell~~s~~~  579 (591)
T KOG0057|consen  528 DMIMDV-MSGRTVIMIVHRLDLLKD--FDKIIVLDNGTVKEYGTHS--ELLAPSELY  579 (591)
T ss_pred             HHHHHh-cCCCeEEEEEecchhHhc--CCEEEEEECCeeEEeccHH--HHhhhhhHH
Confidence            999984 357899999999999886  5999999999999999754  555555543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=2e-46  Score=335.44  Aligned_cols=208  Identities=26%  Similarity=0.409  Sum_probs=166.8

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|+++.|++..+.+|+|+||+|++|++++|+||||||||||+++|+|+  .+|++|+|.++|+++...+.... +..
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~-~~~   79 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--YKPTSGSVLLDGTDIRQLDPADL-RRN   79 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCeEEECCEEhHHCCHHHH-Hhh
Confidence            789999999964335699999999999999999999999999999999998  67899999999998765544333 235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC----------CCCCChH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV----------NEGFSGG  227 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----------~~~LSgG  227 (325)
                      +++++|++.+++ .++.+++.....         ....    ..+.+.++.+++. +.+++.+          ..+||||
T Consensus        80 i~~~~q~~~~~~-~tv~e~l~~~~~---------~~~~----~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG  144 (220)
T cd03245          80 IGYVPQDVTLFY-GTLRDNITLGAP---------LADD----ERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGG  144 (220)
T ss_pred             EEEeCCCCcccc-chHHHHhhcCCC---------CCCH----HHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHH
Confidence            889999998776 577776543210         0111    1234455666664 3333322          1259999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||||++|||||+.+|++|||||||+|||+.+++.+++.|++++++ .|||++|||++++ .+ ||++++|++|++++.|
T Consensus       145 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~-~d~v~~l~~g~i~~~~  220 (220)
T cd03245         145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DL-VDRIIVMDSGRIVADG  220 (220)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-Hh-CCEEEEEeCCeEeecC
Confidence            999999999999999999999999999999999999999998765 8999999999987 45 6999999999998653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-45  Score=340.61  Aligned_cols=225  Identities=19%  Similarity=0.277  Sum_probs=180.6

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~  150 (325)
                      ..++|+++||+++|++  +++|+|+||+|.+||+++|+|+||||||||+++|+|+...   .|++|+|.++|+++.....
T Consensus        17 ~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   94 (267)
T PRK14237         17 EEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI   94 (267)
T ss_pred             CCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence            4568999999999963  6799999999999999999999999999999999998311   2589999999998853211


Q ss_pred             -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020520          151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG  226 (325)
Q Consensus       151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg  226 (325)
                       ....+..++|+||++.+++ .++.+++......    .+.  ....+....+.+.++.+++..   +..++.+. .|||
T Consensus        95 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-~LS~  166 (267)
T PRK14237         95 NVYEMRKHIGMVFQRPNPFA-KSIYENITFALER----AGV--KDKKVLDEIVETSLKQAALWDQVKDDLHKSAL-TLSG  166 (267)
T ss_pred             ChHHHhcceEEEecCCcccc-ccHHHHHHhHHHh----cCC--CCHHHHHHHHHHHHHHcCCCchhhhhhcCCcc-cCCH
Confidence             1122346899999988877 5888887654321    111  112223345667788888741   24556665 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+||++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus       167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g  244 (267)
T PRK14237        167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARA-SDYTAFFYLGDLIEYD  244 (267)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHh-cCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999854 68999999999998877 6999999999999999


Q ss_pred             CccH
Q 020520          307 DASI  310 (325)
Q Consensus       307 ~~~~  310 (325)
                      +++.
T Consensus       245 ~~~~  248 (267)
T PRK14237        245 KTRN  248 (267)
T ss_pred             CHHH
Confidence            8753

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.8e-46  Score=336.47  Aligned_cols=215  Identities=20%  Similarity=0.307  Sum_probs=181.7

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++  +.+|+|+||+|.+||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++.....   .+..
T Consensus         1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~i~g~~~~~~~~---~~~~   73 (237)
T TIGR00968         1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL--EQPDSGRIRLNGQDATRVHA---RDRK   73 (237)
T ss_pred             CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCCh---hhcC
Confidence            478999999974  5799999999999999999999999999999999998  67899999999998865432   1346


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.+++..+..+++......    .+   .......+.+.++++.+++. +..++.+.. ||+||+||++||||
T Consensus        74 i~~~~q~~~~~~~~t~~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-lS~G~~qrl~lara  144 (237)
T TIGR00968        74 IGFVFQHYALFKHLTVRDNIAFGLEI----RK---HPKAKIKARVEELLELVQLE-GLGDRYPNQ-LSGGQRQRVALARA  144 (237)
T ss_pred             EEEEecChhhccCCcHHHHHHhHHHh----cC---CCHHHHHHHHHHHHHHcCCH-hHhhCChhh-CCHHHHHHHHHHHH
Confidence            88999999988888888887643211    01   11122334567789999985 566777664 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+.+|+++||||||+|||+.+++.+.+.|.++.++ ++|||++||+++++..+ ||++++|++|++++.|+.+
T Consensus       145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~-~d~i~~l~~g~i~~~~~~~  216 (237)
T TIGR00968       145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEV-ADRIVVMSNGKIEQIGSPD  216 (237)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh-cCEEEEEECCEEEEecCHH
Confidence            99999999999999999999999999999998765 78999999999988877 6999999999999998765

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=6.9e-46  Score=335.57  Aligned_cols=214  Identities=25%  Similarity=0.358  Sum_probs=181.6

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|++++|++   ++|+|+||+|.+||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++......   +..
T Consensus         1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~--~~p~~G~v~i~g~~~~~~~~~---~~~   72 (235)
T cd03299           1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--IKPDSGKILLNGKDITNLPPE---KRD   72 (235)
T ss_pred             CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEcCcCChh---HcC
Confidence            478999999963   389999999999999999999999999999999998  689999999999998765432   246


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++..++.+++......    .+   ....+....+.++++.+++. +..++.+.+ |||||+||++||||
T Consensus        73 i~~~~q~~~~~~~~t~~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrl~lara  143 (235)
T cd03299          73 ISYVPQNYALFPHMTVYKNIAYGLKK----RK---VDKKEIERKVLEIAEMLGID-HLLNRKPET-LSGGEQQRVAIARA  143 (235)
T ss_pred             EEEEeecCccCCCccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hHHhcCccc-CCHHHHHHHHHHHH
Confidence            88999999888888998887654321    11   11223334567788999995 567777764 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++||+++++..+ +|++++|++|++++.|+.+
T Consensus       144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  215 (235)
T cd03299         144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL-ADKVAIMLNGKLIQVGKPE  215 (235)
T ss_pred             HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEecCHH
Confidence            99999999999999999999999999999998654 88999999999998877 6999999999999998764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.2e-46  Score=371.42  Aligned_cols=224  Identities=25%  Similarity=0.367  Sum_probs=184.6

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC--CccEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      +|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+  .+|  ++|+|.++|+++...+.....
T Consensus         1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~--~~~~~~~G~i~~~g~~~~~~~~~~~~   76 (500)
T TIGR02633         1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV--YPHGTWDGEIYWSGSPLKASNIRDTE   76 (500)
T ss_pred             CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCCeEEEECCEECCCCCHHHHH
Confidence            4799999999963  5799999999999999999999999999999999998  454  799999999998766544433


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|+||++.+++.+++.+++........  .. ......+...++.++++.+++.....++.+. +|||||||||+|
T Consensus        77 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~i  152 (500)
T TIGR02633        77 RAGIVIIHQELTLVPELSVAENIFLGNEITL--PG-GRMAYNAMYLRAKNLLRELQLDADNVTRPVG-DYGGGQQQLVEI  152 (500)
T ss_pred             hCCEEEEeeccccCCCCcHHHHHHhhccccc--cc-cccCHHHHHHHHHHHHHHcCCCCCcccCchh-hCCHHHHHHHHH
Confidence            4568999999988888899888765421100  00 0011223345677889999996322345565 499999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||+||||++++..+ ||++++|++|+++..++++
T Consensus       153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~-~d~i~~l~~G~i~~~~~~~  226 (500)
T TIGR02633       153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAV-CDTICVIRDGQHVATKDMS  226 (500)
T ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHh-CCEEEEEeCCeEeeecCcc
Confidence            9999999999999999999999999999999999987789999999999999887 6999999999999888764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=5.4e-46  Score=332.94  Aligned_cols=214  Identities=26%  Similarity=0.371  Sum_probs=177.7

Q ss_pred             cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--
Q 020520           77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--  152 (325)
Q Consensus        77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--  152 (325)
                      .++++|+++.|+++  .+.+|+++||++++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...  
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~   78 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL--RSVQEGSLKVLGQELYGASEKELV   78 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEhHhcCHhHHH
Confidence            37899999999642  15699999999999999999999999999999999998  6899999999999886655432  


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      ..+.++++++|++.+++..++.+++.......    .  .....+....+.++++.+++. +..++.+. .||||||||+
T Consensus        79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~----~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~lS~G~~qrv  150 (220)
T TIGR02982        79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQ----P--NLSYQEARERARAMLEAVGLG-DHLDYYPH-NLSGGQKQRV  150 (220)
T ss_pred             HHHhheEEEcCChhhcCCCCHHHHHHHHHHhc----c--CCCHHHHHHHHHHHHHHcCCh-hhhhcChh-hCCHHHHHHH
Confidence            22346899999998888889888876542211    0  112233445678889999995 55666665 4999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      +|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .++|||++|||++.. .+ ||++++|++|++
T Consensus       151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~-~d~v~~l~~g~~  219 (220)
T TIGR02982       151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DV-ADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hh-CCEEEEEECCEE
Confidence            999999999999999999999999999999999999875 488999999999865 45 799999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.1e-46  Score=337.67  Aligned_cols=219  Identities=22%  Similarity=0.330  Sum_probs=176.6

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCC-CC
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLE-ME  149 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~-~~  149 (325)
                      ++++++|+++.|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++     |++|+|.++|.++.. .+
T Consensus         2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~~~~~~G~v~~~g~~~~~~~~   77 (249)
T PRK14253          2 NKFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM--NDLIEGVKITGKLTMDGEDIYGNID   77 (249)
T ss_pred             CeEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh--cccccCCCCceEEEECCEEcccccc
Confidence            36899999999963  6799999999999999999999999999999999998  44     369999999998752 22


Q ss_pred             HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020520          150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG  226 (325)
Q Consensus       150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg  226 (325)
                      .... +..++|++|++.+++ .++.+++......    .+..  ......+++.+.++.+++..   +..++.+. +|||
T Consensus        78 ~~~~-~~~i~~~~q~~~~~~-~tv~~~l~~~~~~----~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~LS~  148 (249)
T PRK14253         78 VADL-RIKVGMVFQKPNPFP-MSIYENVAYGLRA----QGIK--DKKVLDEVVERSLRGAALWDEVKDRLKSHAF-GLSG  148 (249)
T ss_pred             hHHH-HhheeEEecCCCcCc-ccHHHHHHhHHHh----cCCC--chHHHHHHHHHHHHHcCCchhhhHHhhcCcc-cCCH
Confidence            2222 246889999998887 7888887654211    1110  11222344566677777632   23455555 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++..+ ||++++|++|++++.|
T Consensus       149 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~-~d~i~~l~~G~i~~~g  226 (249)
T PRK14253        149 GQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRI-SDRTAFFLMGELVEHD  226 (249)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHh-CCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999965 48999999999998887 6999999999999998


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       227 ~~~  229 (249)
T PRK14253        227 DTQ  229 (249)
T ss_pred             CHH
Confidence            764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=343.50  Aligned_cols=224  Identities=22%  Similarity=0.328  Sum_probs=179.5

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CC--CCccEEEECCEeCCCCCH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YE--VTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~--p~~G~I~~~g~~i~~~~~  150 (325)
                      ..++|+++||+++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+.. .+  |++|+|.++|+++.....
T Consensus        36 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~  113 (286)
T PRK14275         36 GKPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT  113 (286)
T ss_pred             CceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence            4668999999999964  569999999999999999999999999999999999731 12  499999999998754221


Q ss_pred             -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCCh
Q 020520          151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFSG  226 (325)
Q Consensus       151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LSg  226 (325)
                       ....+..++|++|++.+++. ++.+++.+....    .+..  ........+.++++.+++.   .+..++.+. .|||
T Consensus       114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LSg  185 (286)
T PRK14275        114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRL----HGIN--DKKQLEEIVEKSLRKAALWDEVSDRLDKNAL-GLSG  185 (286)
T ss_pred             chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHh----cCCC--cHHHHHHHHHHHHHHhCCccchhhHhhCChh-hCCH
Confidence             11223468999999988874 888888654211    1111  1122234566677777763   134566665 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|+++..|
T Consensus       186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~-~d~i~~L~~G~i~~~g  263 (286)
T PRK14275        186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRV-SDYTMFFYEGVLVEHA  263 (286)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh-CCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999865 58999999999998887 6999999999999998


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       264 ~~~  266 (286)
T PRK14275        264 PTA  266 (286)
T ss_pred             CHH
Confidence            764

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=336.74  Aligned_cols=220  Identities=23%  Similarity=0.343  Sum_probs=176.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCC--CHH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEM--EPE  151 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~--~~~  151 (325)
                      +|+++||++.|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+....|   ++|+|.++|+++...  +..
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14240          3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN   80 (250)
T ss_pred             eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence            5899999999964  579999999999999999999999999999999999732113   699999999988642  222


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGE  228 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGq  228 (325)
                      .. +..+++++|++.+++ .++.+++......    .+..  ...+..+.+.+.++.+++..   +..++.+. +|||||
T Consensus        81 ~~-~~~i~~~~q~~~~~~-~t~~~ni~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~G~  151 (250)
T PRK14240         81 QL-RKRVGMVFQQPNPFP-MSIYDNVAYGPRT----HGIK--DKKKLDEIVEKSLKGAALWDEVKDRLKKSAL-GLSGGQ  151 (250)
T ss_pred             HH-hccEEEEecCCccCc-ccHHHHHHHHHHh----cCCC--CHHHHHHHHHHHHHHcCCchhhHHHHhcCCC-CCCHHH
Confidence            22 235889999988777 7888887653211    1111  11223345667777877631   23456665 499999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++.+..+ +|++++|++|++++.|++
T Consensus       152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~-~d~v~~l~~G~i~~~~~~  229 (250)
T PRK14240        152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRI-SDKTAFFLNGEIVEFGDT  229 (250)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhh-CCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999854 68999999999988887 699999999999999876


Q ss_pred             c
Q 020520          309 S  309 (325)
Q Consensus       309 ~  309 (325)
                      +
T Consensus       230 ~  230 (250)
T PRK14240        230 V  230 (250)
T ss_pred             H
Confidence            5

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.7e-46  Score=388.83  Aligned_cols=262  Identities=23%  Similarity=0.314  Sum_probs=204.8

Q ss_pred             hhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccH
Q 020520           41 NYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGK  118 (325)
Q Consensus        41 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGK  118 (325)
                      .+..+..+..++.++++..+......... ........++++||.|+|+.. +..+|+|+||+|++|+.+||||||||||
T Consensus       313 ~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGK  392 (1228)
T KOG0055|consen  313 AFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGK  392 (1228)
T ss_pred             HHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCH
Confidence            45666777777777777555543332111 122345689999999999864 2479999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHH
Q 020520          119 STLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF  198 (325)
Q Consensus       119 STLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (325)
                      ||++++|.++  |.|++|+|.+||.++..+..+..+. .+++|+|+|.+|. .|..+|+.++         .++++.++.
T Consensus       393 ST~i~LL~Rf--ydP~~G~V~idG~di~~~~~~~lr~-~iglV~QePvlF~-~tI~eNI~~G---------~~dat~~~i  459 (1228)
T KOG0055|consen  393 STLIQLLARF--YDPTSGEVLIDGEDIRNLNLKWLRS-QIGLVSQEPVLFA-TTIRENIRYG---------KPDATREEI  459 (1228)
T ss_pred             HHHHHHHHHh--cCCCCceEEEcCccchhcchHHHHh-hcCeeeechhhhc-ccHHHHHhcC---------CCcccHHHH
Confidence            9999999998  8999999999999999988776554 5788999997765 5788877543         344444443


Q ss_pred             HHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC
Q 020520          199 YAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK  273 (325)
Q Consensus       199 ~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g  273 (325)
                      .+.     +.+.+..+....+..-..-+.+||||||||+||||||+++|+|||||||||+||+++++.+.+.|.++. .|
T Consensus       460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~g  538 (1228)
T KOG0055|consen  460 EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KG  538 (1228)
T ss_pred             HHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cC
Confidence            322     334455554443333333334699999999999999999999999999999999999999999999875 46


Q ss_pred             cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          274 NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       274 ~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +|-|+|+|++..+..  +|+|++|++|+|++.|+++  ++++..|.|
T Consensus       539 rTTivVaHRLStIrn--aD~I~v~~~G~IvE~G~h~--ELi~~~G~Y  581 (1228)
T KOG0055|consen  539 RTTIVVAHRLSTIRN--ADKIAVMEEGKIVEQGTHD--ELIALGGIY  581 (1228)
T ss_pred             CeEEEEeeehhhhhc--cCEEEEEECCEEEEecCHH--HHHhccchH
Confidence            788999999999886  6999999999999999765  566666643

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=337.19  Aligned_cols=220  Identities=20%  Similarity=0.339  Sum_probs=176.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCCC--C
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLEM--E  149 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~~--~  149 (325)
                      +++++||+++|++  +.+|+|+||+|++||+++|+|+||||||||+|+|+|+  ++|     ++|+|.++|+++...  .
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~~~~~~~~   79 (252)
T PRK14272          4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM--HDLTPGARVTGRILLDGQDIYGPRVD   79 (252)
T ss_pred             EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCcCCCCceeEEECCEEcccCccC
Confidence            7899999999963  5799999999999999999999999999999999998  444     389999999988642  2


Q ss_pred             HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCCh
Q 020520          150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFSG  226 (325)
Q Consensus       150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LSg  226 (325)
                      ... .+..++|++|++.+++..++.+++......    .+..  ..++..+.+.+.++.+++.   .+..++.+. .|||
T Consensus        80 ~~~-~~~~i~~~~q~~~~~~~~t~~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~  151 (252)
T PRK14272         80 PVA-MRRRVGMVFQKPNPFPTMSVFDNVVAGLKL----AGIR--DRDHLMEVAERSLRGAALWDEVKDRLKTPAT-GLSG  151 (252)
T ss_pred             HHH-hhceeEEEeccCccCcCCCHHHHHHHHHHh----cCCC--CHHHHHHHHHHHHHHcCcchhhhhhhcCCcc-cCCH
Confidence            222 234588999999888888998887654321    1110  1122233445556666542   123456665 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus       152 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~  229 (252)
T PRK14272        152 GQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARV-SDTTSFFLVGDLVEHG  229 (252)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh-CCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999864 68999999999998877 6999999999999998


Q ss_pred             CccH
Q 020520          307 DASI  310 (325)
Q Consensus       307 ~~~~  310 (325)
                      +++.
T Consensus       230 ~~~~  233 (252)
T PRK14272        230 PTDQ  233 (252)
T ss_pred             CHHH
Confidence            7653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-45  Score=336.61  Aligned_cols=222  Identities=21%  Similarity=0.338  Sum_probs=177.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-----ccEEEECCEeCCCCC
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-----EGSVVFKGENLLEME  149 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-----~G~I~~~g~~i~~~~  149 (325)
                      .++++++||+++|++  +.+|+|+||+|++|++++|+||||||||||+++|+|+  ++|+     +|+|.++|+++...+
T Consensus         2 ~~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~~~~~~G~v~~~g~~~~~~~   77 (251)
T PRK14249          2 DPKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM--NDIVSGARLEGAVLLDNENIYSPN   77 (251)
T ss_pred             CceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCccccCCcccEEEECCEEccccc
Confidence            357999999999963  5799999999999999999999999999999999998  5565     699999999875422


Q ss_pred             H-HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020520          150 P-EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFS  225 (325)
Q Consensus       150 ~-~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LS  225 (325)
                      . ....+..++|++|++.+++. ++.+++.+....    .+..  ...+....+.+.++.+++..   +..++.+. .||
T Consensus        78 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS  149 (251)
T PRK14249         78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRM----LGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKSGL-ALS  149 (251)
T ss_pred             cChHHhhceEEEEecCCccCcC-cHHHHHhhHHHh----cCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCCcc-cCC
Confidence            1 11223468999999988875 888887654221    1111  11122234555667776531   23556665 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      |||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. ++.|||++|||++++..+ ||++++|++|++++.
T Consensus       150 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~-~d~i~~l~~G~i~~~  227 (251)
T PRK14249        150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARA-SDWTGFLLTGDLVEY  227 (251)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhh-CCEEEEEeCCeEEEe
Confidence            999999999999999999999999999999999999999999985 578999999999999887 699999999999999


Q ss_pred             cCccH
Q 020520          306 GDASI  310 (325)
Q Consensus       306 g~~~~  310 (325)
                      |+++.
T Consensus       228 ~~~~~  232 (251)
T PRK14249        228 GRTGE  232 (251)
T ss_pred             CCHHH
Confidence            87653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-46  Score=372.53  Aligned_cols=230  Identities=21%  Similarity=0.300  Sum_probs=186.3

Q ss_pred             CCcEEEEEEEEEECC-CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-CCccEEEECCEeCCCCCHHH
Q 020520           75 QPLLQVTGLTAVIAE-SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-VTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~-~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-p~~G~I~~~g~~i~~~~~~~  152 (325)
                      .++|+++||++.|+. +++.+|+|+||+|++||+++|+|+||||||||+|+|+|+  ++ |++|+|.++|+++...+...
T Consensus       257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~~~~~G~i~~~g~~~~~~~~~~  334 (506)
T PRK13549        257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA--YPGRWEGEIFIDGKPVKIRNPQQ  334 (506)
T ss_pred             CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC--CCCCCCcEEEECCEECCCCCHHH
Confidence            458999999999952 235699999999999999999999999999999999998  56 58999999999886544332


Q ss_pred             HhhccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          153 RSLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       153 ~~~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      ..+.+++|++|++   .+++.+++.+++........  .........+...++.++++.+++..+..++.+.+ ||||||
T Consensus       335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgG~k  411 (506)
T PRK13549        335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRF--TGGSRIDDAAELKTILESIQRLKVKTASPELAIAR-LSGGNQ  411 (506)
T ss_pred             HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhh--ccCcccChHHHHHHHHHHHHhcCccCCCccccccc-CCHHHH
Confidence            2234688999996   36777898888765421100  00000112233356778899999953456777765 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++..+ ||++++|++|+++..|+++
T Consensus       412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~-~d~v~~l~~G~i~~~~~~~  490 (506)
T PRK13549        412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGL-SDRVLVMHEGKLKGDLINH  490 (506)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEeccc
Confidence            999999999999999999999999999999999999999987789999999999999887 6999999999999988765


Q ss_pred             H
Q 020520          310 I  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       491 ~  491 (506)
T PRK13549        491 N  491 (506)
T ss_pred             c
Confidence            3

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-45  Score=335.36  Aligned_cols=223  Identities=22%  Similarity=0.315  Sum_probs=176.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCCH-
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEMEP-  150 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~~-  150 (325)
                      .++|+++||+++|+.  +.+|+|+||+|++||+++|+|+||||||||+++|+|+....|   ++|+|.++|+++...+. 
T Consensus         3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   80 (252)
T PRK14255          3 KKIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED   80 (252)
T ss_pred             cceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence            458999999999974  579999999999999999999999999999999999732224   58999999998853211 


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCChH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFSGG  227 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LSgG  227 (325)
                      ....+..+++++|++.+++ .++.+++......    .+..  ........+.+.++.+++.   .+..++.+. +||||
T Consensus        81 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-~LS~G  152 (252)
T PRK14255         81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRL----AGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHESAL-SLSGG  152 (252)
T ss_pred             HHHhcCeEEEEECCCccCC-CcHHHHHHHHHHH----cCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcCcc-cCCHH
Confidence            1122346899999998887 5888887654321    1111  1111223455667777652   123455665 49999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||+||||++++..+ +|++++|++|++++.|+
T Consensus       153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~-~d~i~~l~~G~i~~~~~  230 (252)
T PRK14255        153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRI-SDKTAFFLTGNLIEFAD  230 (252)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHh-CCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999865 47999999999998877 69999999999999987


Q ss_pred             cc
Q 020520          308 AS  309 (325)
Q Consensus       308 ~~  309 (325)
                      +.
T Consensus       231 ~~  232 (252)
T PRK14255        231 TK  232 (252)
T ss_pred             HH
Confidence            64

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=340.00  Aligned_cols=221  Identities=26%  Similarity=0.345  Sum_probs=176.0

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-----CCccEEEECCEeCCCC
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-----VTEGSVVFKGENLLEM  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-----p~~G~I~~~g~~i~~~  148 (325)
                      ..++|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++     |++|+|.++|+++...
T Consensus        21 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--~~~~~~~~~~G~i~~~g~~~~~~   96 (271)
T PRK14238         21 KKVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM--VELVPSVKTTGKILYRDQNIFDK   96 (271)
T ss_pred             CceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--ccCCCCCCCceeEEECCEEcccc
Confidence            4568999999999964  5799999999999999999999999999999999997  33     6999999999987532


Q ss_pred             --CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCC
Q 020520          149 --EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEG  223 (325)
Q Consensus       149 --~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~  223 (325)
                        ..... ...++|+||++.+++. ++.+++......    ....  ........+.+.++.+++.   .+.+++.+. .
T Consensus        97 ~~~~~~~-~~~i~~v~q~~~~~~~-tv~eni~~~~~~----~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~  167 (271)
T PRK14238         97 SYSVEEL-RTNVGMVFQKPNPFPK-SIYDNVTYGPKI----HGIK--DKKTLDEIVEKSLRGAAIWDELKDRLHDNAY-G  167 (271)
T ss_pred             cccHHHH-hhhEEEEecCCccccc-cHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHHcCCcchHHHHHhcCcc-c
Confidence              22222 2458899999988764 888887654311    1110  1112223345556665431   123455665 4


Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      ||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|++|+++
T Consensus       168 LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~-~d~i~~l~~G~i~  245 (271)
T PRK14238        168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARI-SDKTAFFLNGYVN  245 (271)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHh-CCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999865 68999999999998877 6999999999999


Q ss_pred             EEcCcc
Q 020520          304 KTGDAS  309 (325)
Q Consensus       304 ~~g~~~  309 (325)
                      +.|+++
T Consensus       246 ~~g~~~  251 (271)
T PRK14238        246 EYDDTD  251 (271)
T ss_pred             EeCCHH
Confidence            998765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=6.1e-46  Score=336.20  Aligned_cols=201  Identities=26%  Similarity=0.381  Sum_probs=164.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEec-cCCccCCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSF-QSPVEIPG  170 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~-Q~~~~~~~  170 (325)
                      +++|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++..... . .+..++|++ |.+.+++.
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~~~~~~~-~-~~~~i~~~~~~~~~~~~~  109 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--LQPTSGEVRVAGLVPWKRRK-K-FLRRIGVVFGQKTQLWWD  109 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEccccch-h-hcccEEEEcCCccccCCC
Confidence            5799999999999999999999999999999999998  67999999999987643222 1 223578887 55667777


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCc
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI  250 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEP  250 (325)
                      +++.+++.......    +   ....+....+.++++.+++. +..++.+.. ||||||||++|||||+.+|++||||||
T Consensus       110 ~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LS~G~~qrl~la~al~~~p~llllDEP  180 (236)
T cd03267         110 LPVIDSFYLLAAIY----D---LPPARFKKRLDELSELLDLE-ELLDTPVRQ-LSLGQRMRAEIAAALLHEPEILFLDEP  180 (236)
T ss_pred             CcHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            88888875532211    1   11223344566788888985 456777664 999999999999999999999999999


Q ss_pred             CcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          251 DSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       251 tsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+|||+.+++.+.++|++++++ +.|||++|||++++..+ +|++++|++|++++.|
T Consensus       181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~G~i~~~g  236 (236)
T cd03267         181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL-ARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh-CCEEEEEeCCEEEecC
Confidence            9999999999999999998654 78999999999998887 6999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=1.2e-45  Score=333.37  Aligned_cols=214  Identities=22%  Similarity=0.320  Sum_probs=171.9

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++.++.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+....+ ..
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~-~~   77 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF--YDVDSGRILIDGHDVRDYTLASLR-RQ   77 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccCCCCEEEECCEEhhhCCHHHHH-hh
Confidence            478999999974334799999999999999999999999999999999998  679999999999988655443332 35


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHH-----HHhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF-----YAYLYPKLERL--SMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      +++++|++.+++ .++.+++.....         .....+.     ...+.+.++.+  ++. ...++.+. .|||||||
T Consensus        78 i~~~~q~~~~~~-~tv~enl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~-~LS~G~~q  145 (234)
T cd03251          78 IGLVSQDVFLFN-DTVAENIAYGRP---------GATREEVEEAARAANAHEFIMELPEGYD-TVIGERGV-KLSGGQRQ  145 (234)
T ss_pred             EEEeCCCCeecc-ccHHHHhhccCC---------CCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCC-cCCHHHHH
Confidence            889999998776 588887654211         0011111     11234455555  443 33455555 59999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..  ||++++|++|++++.|+++
T Consensus       146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~v~~l~~G~i~~~~~~~  221 (234)
T cd03251         146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIEN--ADRIVVLEDGKIVERGTHE  221 (234)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh--CCEEEEecCCeEeeeCCHH
Confidence            99999999999999999999999999999999999999864 7899999999999864  6999999999999988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=7.8e-46  Score=371.82  Aligned_cols=225  Identities=25%  Similarity=0.373  Sum_probs=182.2

Q ss_pred             CCcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCC
Q 020520           75 QPLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLE  147 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~  147 (325)
                      .++|+++|++++|+++  .+.+|+++||+|++||++||+||||||||||+|+|+|+  ++|     ++|+|.++|+++..
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~--~~~~~~~~~~G~i~~~g~~i~~   80 (529)
T PRK15134          3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL--LPSPPVVYPSGDIRFHGESLLH   80 (529)
T ss_pred             CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCcCCccceEEEECCEeccc
Confidence            3589999999999631  25799999999999999999999999999999999998  444     79999999999876


Q ss_pred             CCHHHH---hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccC
Q 020520          148 MEPEER---SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNV  220 (325)
Q Consensus       148 ~~~~~~---~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~  220 (325)
                      .+...+   +...++++||++.  +++..++.+++.......   .+   ....+...++.++++.+++..  +..++.+
T Consensus        81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~  154 (529)
T PRK15134         81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH---RG---MRREAARGEILNCLDRVGIRQAAKRLTDYP  154 (529)
T ss_pred             CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence            554321   2235899999975  445566666654322110   01   122334566788899999952  1356777


Q ss_pred             CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      .+ |||||||||+|||||+.+|++|||||||++||+.+++.++++|++++++ |.|||+||||++++..+ ||+|++|++
T Consensus       155 ~~-LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~-~dri~~l~~  232 (529)
T PRK15134        155 HQ-LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKL-ADRVAVMQN  232 (529)
T ss_pred             cc-cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHh-cCEEEEEEC
Confidence            64 9999999999999999999999999999999999999999999998765 88999999999999887 699999999


Q ss_pred             CEEEEEcCcc
Q 020520          300 GRIIKTGDAS  309 (325)
Q Consensus       300 G~iv~~g~~~  309 (325)
                      |++++.|+++
T Consensus       233 G~i~~~g~~~  242 (529)
T PRK15134        233 GRCVEQNRAA  242 (529)
T ss_pred             CEEEEeCCHH
Confidence            9999988764

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=6.1e-46  Score=328.88  Aligned_cols=203  Identities=21%  Similarity=0.274  Sum_probs=167.9

Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHHhhc
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EERSLA  156 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~~~~  156 (325)
                      ++||++.|++  +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++.....   ....+.
T Consensus         1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   76 (206)
T TIGR03608         1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL--EKFDSGQVYLNGKETPPLNSKKASKFRRE   76 (206)
T ss_pred             CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccchhhHHHHHHh
Confidence            4799999963  5799999999999999999999999999999999998  67999999999998654332   222334


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|++.+++..++.+++......    .+   ....+....+.++++.+++. +..++.+.+ ||||||||++|||
T Consensus        77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-lS~G~~qr~~lar  147 (206)
T TIGR03608        77 KLGYLFQNFALIENETVEENLDLGLKY----KK---LSKKEKREKKKEALEKVGLN-LKLKQKIYE-LSGGEQQRVALAR  147 (206)
T ss_pred             CeeEEecchhhccCCcHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCch-hhhcCChhh-CCHHHHHHHHHHH
Confidence            688999999888888998887654221    11   11223345677889999995 566777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++||+++++. . ||++++|
T Consensus       148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~i~~l  206 (206)
T TIGR03608       148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-Q-ADRVIEL  206 (206)
T ss_pred             HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-h-cCEEEeC
Confidence            999999999999999999999999999999998766889999999998764 5 6998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-45  Score=335.66  Aligned_cols=224  Identities=20%  Similarity=0.303  Sum_probs=178.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCCH-
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEMEP-  150 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~~-  150 (325)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+....|   ++|+|.++|+++...+. 
T Consensus         4 ~~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   81 (253)
T PRK14261          4 EIILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD   81 (253)
T ss_pred             cceEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence            458999999999963  579999999999999999999999999999999999732223   58999999999865421 


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG  227 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG  227 (325)
                      ....+..++|++|++.+++. ++.+++.+....    .+..  ...+....+.++++.+++..   +..++.+. .||||
T Consensus        82 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~G  153 (253)
T PRK14261         82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRI----HGEK--NKKTLDTIVEKSLKGAALWDEVKDRLHDSAL-SLSGG  153 (253)
T ss_pred             hhhhhceEEEEecCCccCcc-cHHHHHHhhHHh----cCCC--CHHHHHHHHHHHHHHhcCchhhHHHhhcChh-hCCHH
Confidence            11223468999999988874 888887654321    1111  11222344666777777632   23455555 49999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ +|++++|++|++++.|+
T Consensus       154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~-~d~v~~l~~G~i~~~g~  231 (253)
T PRK14261        154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARV-SDYTGFMYLGKLIEFDK  231 (253)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhh-CCEEEEEECCEEEEcCC
Confidence            99999999999999999999999999999999999999999865 58999999999998876 69999999999999988


Q ss_pred             ccH
Q 020520          308 ASI  310 (325)
Q Consensus       308 ~~~  310 (325)
                      ++.
T Consensus       232 ~~~  234 (253)
T PRK14261        232 TTQ  234 (253)
T ss_pred             HHH
Confidence            653

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=2.7e-45  Score=371.27  Aligned_cols=273  Identities=23%  Similarity=0.310  Sum_probs=204.9

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCCc-ccceeeeEEEEeCC
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAESK-QEILKGVNLLVNEG  105 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~~-~~iL~~vsl~i~~G  105 (325)
                      +..|+..+......+.....+.+|+.++++.+++........ ...+....++++||+++|+..+ +.+|+|+||+|++|
T Consensus       287 ~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G  366 (576)
T TIGR02204       287 VAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPG  366 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCC
Confidence            345666777777888889999999998876543321111111 1111234699999999997432 57999999999999


Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR  185 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      |.++|+|+||||||||+|+|+|+  ++|++|+|.++|.++...+....+. .+++++|++.+|++ |..+|+..+     
T Consensus       367 e~i~IvG~sGsGKSTLlklL~gl--~~p~~G~I~i~g~~i~~~~~~~~~~-~i~~~~Q~~~lf~~-Ti~~Ni~~~-----  437 (576)
T TIGR02204       367 ETVALVGPSGAGKSTLFQLLLRF--YDPQSGRILLDGVDLRQLDPAELRA-RMALVPQDPVLFAA-SVMENIRYG-----  437 (576)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEHHhcCHHHHHH-hceEEccCCccccc-cHHHHHhcC-----
Confidence            99999999999999999999998  7899999999999998887766543 48899999998865 777776542     


Q ss_pred             hhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020520          186 RKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR  260 (325)
Q Consensus       186 ~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~  260 (325)
                          .++.+.++....     +.+.++.+..+.+..-...+..||||||||++||||++++|++||||||||+||+.+++
T Consensus       438 ----~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~  513 (576)
T TIGR02204       438 ----RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ  513 (576)
T ss_pred             ----CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHH
Confidence                122222222211     22233443211111111223459999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020520          261 DVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG  318 (325)
Q Consensus       261 ~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~  318 (325)
                      .+++.|+++. +++|+|+|||+++.+..  +|+|++|++|++++.|+++  ++++..+
T Consensus       514 ~i~~~l~~~~-~~~t~IiitH~~~~~~~--~d~vi~l~~g~~~~~g~~~--~l~~~~~  566 (576)
T TIGR02204       514 LVQQALETLM-KGRTTLIIAHRLATVLK--ADRIVVMDQGRIVAQGTHA--ELIAKGG  566 (576)
T ss_pred             HHHHHHHHHh-CCCEEEEEecchHHHHh--CCEEEEEECCEEEeeecHH--HHHHcCC
Confidence            9999999985 46899999999988764  6999999999999999865  4455555

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-45  Score=336.32  Aligned_cols=221  Identities=21%  Similarity=0.292  Sum_probs=175.7

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-C--CCccEEEECCEeCCCCCHH-HH
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-E--VTEGSVVFKGENLLEMEPE-ER  153 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~--p~~G~I~~~g~~i~~~~~~-~~  153 (325)
                      -+++||+++|++  +++|+|+||+|++||+++|+|+||||||||+++|+|+..+ +  |++|+|.++|+++...+.. ..
T Consensus         6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   83 (251)
T PRK14244          6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL   83 (251)
T ss_pred             EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence            578999999963  6799999999999999999999999999999999998321 1  4799999999987543211 11


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGERK  230 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGqrQ  230 (325)
                      .+..++|+||++.+++. ++.+++......    .... ....+....+.++++.+++..   ...++.+. .|||||||
T Consensus        84 ~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~----~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~Gq~q  156 (251)
T PRK14244         84 LRAKVGMVFQKPNPFPK-SIYDNVAYGPKL----HGLA-KNKKKLDEIVEKSLTSVGLWEELGDRLKDSAF-ELSGGQQQ  156 (251)
T ss_pred             HhhhEEEEecCcccccC-CHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHHHcCCCchhhhHhhcChh-hCCHHHHH
Confidence            23468899999988875 788877543211    1110 011223345667788998852   13455555 49999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~-~d~i~~l~~G~i~~~~~~~  233 (251)
T PRK14244        157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKV-SDRVAFFQSGRIVEYNTTQ  233 (251)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhh-cCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999999854 78999999999998877 6999999999999998764

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-45  Score=338.56  Aligned_cols=224  Identities=22%  Similarity=0.329  Sum_probs=178.7

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~  150 (325)
                      ..++++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+...   .|++|+|.++|.++.....
T Consensus        22 ~~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~   99 (272)
T PRK14236         22 EQTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV   99 (272)
T ss_pred             CCcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence            3558999999999964  5799999999999999999999999999999999998321   1489999999998864211


Q ss_pred             -HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020520          151 -EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG  226 (325)
Q Consensus       151 -~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg  226 (325)
                       ....+..++|++|++.+++. ++.+++......    .+..  ........+.++++.+++..   +..++.+. +|||
T Consensus       100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~LS~  171 (272)
T PRK14236        100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRL----QGIN--NRRVLDEAVERSLRGAALWDEVKDRLHENAF-GLSG  171 (272)
T ss_pred             CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHHcCCChhHHHHhhCCcc-cCCH
Confidence             11223468899999988875 888887554221    1110  11222344666778887742   23455555 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+ ||++++|++|++++.|
T Consensus       172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~-~d~i~~l~~G~i~~~g  249 (272)
T PRK14236        172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARV-SDYTAFMYMGKLVEYG  249 (272)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhh-CCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999999999999975 68999999999998876 6999999999999998


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       250 ~~~  252 (272)
T PRK14236        250 DTD  252 (272)
T ss_pred             CHH
Confidence            764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-46  Score=378.69  Aligned_cols=226  Identities=23%  Similarity=0.282  Sum_probs=185.7

Q ss_pred             CCCcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC-----
Q 020520           74 SQPLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL-----  146 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~-----  146 (325)
                      ..++|+++||+++|+..  ..++|+|+||+|++||++||+|+||||||||+|+|+|+  ++|++|+|.++|.++.     
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl--l~p~~G~i~~~g~~~~~~~~~   86 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL--LEQAGGLVQCDKMLLRRRSRQ   86 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCeEEEECCEEecccccc
Confidence            45689999999999632  24699999999999999999999999999999999998  6789999999997542     


Q ss_pred             -----CCCHHH---HhhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--c
Q 020520          147 -----EMEPEE---RSLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--D  214 (325)
Q Consensus       147 -----~~~~~~---~~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~  214 (325)
                           ..+...   .+...++|+||++  .+++.+++.+++.......   .+   ....+...++.++++.+++..  +
T Consensus        87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~~~~~l~~~gL~~~~~  160 (623)
T PRK10261         87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH---QG---ASREEAMVEAKRMLDQVRIPEAQT  160 (623)
T ss_pred             ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHCCCCChhh
Confidence                 112221   1223589999998  5777889999887653211   01   123344567788899999952  3


Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcE
Q 020520          215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTF  293 (325)
Q Consensus       215 ~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~  293 (325)
                      .+++.+.+ |||||||||+|||||+.+|+||||||||++||+.++++++++|+++.++ |+|||+||||++++..+ ||+
T Consensus       161 ~~~~~~~~-LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~-adr  238 (623)
T PRK10261        161 ILSRYPHQ-LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEI-ADR  238 (623)
T ss_pred             HHhCCCcc-CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCE
Confidence            46777765 9999999999999999999999999999999999999999999999755 89999999999999887 699


Q ss_pred             EEEEeCCEEEEEcCcc
Q 020520          294 IHIMEDGRIIKTGDAS  309 (325)
Q Consensus       294 i~vl~~G~iv~~g~~~  309 (325)
                      |++|++|++++.|+++
T Consensus       239 i~vl~~G~i~~~g~~~  254 (623)
T PRK10261        239 VLVMYQGEAVETGSVE  254 (623)
T ss_pred             EEEeeCCeecccCCHH
Confidence            9999999999988764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-46  Score=369.22  Aligned_cols=220  Identities=23%  Similarity=0.283  Sum_probs=183.4

Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF  159 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~  159 (325)
                      ++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+.....+..++
T Consensus         1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   76 (491)
T PRK10982          1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI--YQKDSGSILFQGKEIDFKSSKEALENGIS   76 (491)
T ss_pred             CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence            4689999963  5799999999999999999999999999999999998  67999999999999876554333334688


Q ss_pred             EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH
Q 020520          160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV  239 (325)
Q Consensus       160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~  239 (325)
                      +++|++.+++.+++.+++.......   .+. .....+..+++.++++.+++. ...++.+.+ |||||||||+|||||+
T Consensus        77 ~v~q~~~~~~~~tv~~~l~~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv~lA~al~  150 (491)
T PRK10982         77 MVHQELNLVLQRSVMDNMWLGRYPT---KGM-FVDQDKMYRDTKAIFDELDID-IDPRAKVAT-LSVSQMQMIEIAKAFS  150 (491)
T ss_pred             EEecccccccCCCHHHHhhcccccc---ccc-ccCHHHHHHHHHHHHHHcCCC-CCccCchhh-CCHHHHHHHHHHHHHH
Confidence            9999998888889998876432100   000 011223345677889999986 456777764 9999999999999999


Q ss_pred             hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      .+|++|||||||+|||+.+++++.++|++++++|.|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus       151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~-~d~i~~l~~G~i~~~~~~~~  220 (491)
T PRK10982        151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQL-CDEITILRDGQWIATQPLAG  220 (491)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEeecChhh
Confidence            99999999999999999999999999999977789999999999999887 69999999999999987653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-45  Score=338.90  Aligned_cols=224  Identities=21%  Similarity=0.312  Sum_probs=176.7

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCC
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEME  149 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~  149 (325)
                      +..++|+++||+++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+....   |++|+|.++|+++....
T Consensus        16 ~~~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~   93 (274)
T PRK14265         16 PDHSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ   93 (274)
T ss_pred             CCCceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence            45669999999999964  57999999999999999999999999999999999983212   26999999999875322


Q ss_pred             HH-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc---cccccccCCCCCC
Q 020520          150 PE-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK---TDFLNRNVNEGFS  225 (325)
Q Consensus       150 ~~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~LS  225 (325)
                      .. ...+.+++|+||++.+++. ++.+++.......    ...    ......+.+.++.+++.   .+..++.+. .||
T Consensus        94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~----~~~----~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS  163 (274)
T PRK14265         94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN----GYK----GNLDELVEDSLRRAAIWEEVKDKLKEKGT-ALS  163 (274)
T ss_pred             chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc----Cch----HHHHHHHHHHHHHcccchhhHHHhcCCcc-cCC
Confidence            11 1223468999999987764 8888775532110    000    01122345556666652   123455555 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe-------
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME-------  298 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~-------  298 (325)
                      |||+|||+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+ ||++++|+       
T Consensus       164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~-~d~i~~l~~~~~~~~  241 (274)
T PRK14265        164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRV-ADWTAFFNTEIDEYG  241 (274)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-CCEEEEEeccccccc
Confidence            9999999999999999999999999999999999999999999965 58999999999999887 69999997       


Q ss_pred             --CCEEEEEcCccH
Q 020520          299 --DGRIIKTGDASI  310 (325)
Q Consensus       299 --~G~iv~~g~~~~  310 (325)
                        +|++++.|+++.
T Consensus       242 ~~~G~~~~~g~~~~  255 (274)
T PRK14265        242 KRRGKLVEFSPTEQ  255 (274)
T ss_pred             ccCceEEEeCCHHH
Confidence              899999998753

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.3e-45  Score=326.77  Aligned_cols=202  Identities=21%  Similarity=0.287  Sum_probs=169.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++.......+  .
T Consensus         1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~v~~~g~~~~~~~~~~~--~   74 (204)
T PRK13538          1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL--ARPDAGEVLWQGEPIRRQRDEYH--Q   74 (204)
T ss_pred             CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEcccchHHhh--h
Confidence            5899999999964  5799999999999999999999999999999999998  67999999999998865432222  3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|++.+++..++.+++......    .+.      .....+.++++.+++. +..++.+. .||||||||++|||
T Consensus        75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~----~~~------~~~~~~~~~l~~~gl~-~~~~~~~~-~LS~G~~qrl~la~  142 (204)
T PRK13538         75 DLLYLGHQPGIKTELTALENLRFYQRL----HGP------GDDEALWEALAQVGLA-GFEDVPVR-QLSAGQQRRVALAR  142 (204)
T ss_pred             heEEeCCccccCcCCcHHHHHHHHHHh----cCc------cHHHHHHHHHHHcCCH-HHhhCChh-hcCHHHHHHHHHHH
Confidence            478889998888888999887654321    110      1124567789999995 45677766 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      ||+++|++|||||||++||+.+++.+.++|+++++++.|||++|||++++... .+|++++
T Consensus       143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~-~~~~~~~  202 (204)
T PRK13538        143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD-KVRKLRL  202 (204)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC-CceEEec
Confidence            99999999999999999999999999999999876688999999999999874 6788766

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.3e-45  Score=332.83  Aligned_cols=198  Identities=23%  Similarity=0.398  Sum_probs=166.7

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchH
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNI  174 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~  174 (325)
                      |+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+..      .++++|++.+++.+++.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~------~~~v~q~~~l~~~~tv~   72 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL--AQPTSGGVILEGKQITEPGPD------RMVVFQNYSLLPWLTVR   72 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChh------heEEecCcccCCCCCHH
Confidence            5799999999999999999999999999999998  679999999999988654321      25789999888888999


Q ss_pred             HHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCC
Q 020520          175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL  254 (325)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgL  254 (325)
                      +++.......   .  ......+....+.+.++.+++. +..++.+.+ ||||||||++|||||+.+|++|||||||+||
T Consensus        73 e~l~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~la~al~~~p~lllLDEPt~gL  145 (230)
T TIGR01184        73 ENIALAVDRV---L--PDLSKSERRAIVEEHIALVGLT-EAADKRPGQ-LSGGMKQRVAIARALSIRPKVLLLDEPFGAL  145 (230)
T ss_pred             HHHHHHHHhc---c--cCCCHHHHHHHHHHHHHHcCCH-HHHcCChhh-CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            9876643110   0  1112233345577889999996 566777764 9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          255 DVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       255 D~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |+.+++.+.+.|+++.++ |.|||+||||++++..+ ||++++|++|++++.|+.
T Consensus       146 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-~d~v~~l~~G~i~~~~~~  199 (230)
T TIGR01184       146 DALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLL-SDRVVMLTNGPAANIGQI  199 (230)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEeCCcEecccCc
Confidence            999999999999998754 88999999999998887 699999999999988865

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.1e-45  Score=370.64  Aligned_cols=226  Identities=23%  Similarity=0.390  Sum_probs=185.1

Q ss_pred             CCCcEEEEEEEEEECC---------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020520           74 SQPLLQVTGLTAVIAE---------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN  144 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~---------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~  144 (325)
                      ..++|+++||++.|+.         +++.+|+++||+|++||+++|+||||||||||+|+|+|+  + |++|+|+++|++
T Consensus       272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--~-~~~G~i~~~g~~  348 (529)
T PRK15134        272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL--I-NSQGEIWFDGQP  348 (529)
T ss_pred             CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc--C-CCCcEEEECCEE
Confidence            3568999999999952         135799999999999999999999999999999999997  4 489999999999


Q ss_pred             CCCCCHHHH--hhccEEEeccCC--ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC
Q 020520          145 LLEMEPEER--SLAGLFMSFQSP--VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV  220 (325)
Q Consensus       145 i~~~~~~~~--~~~~i~~~~Q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  220 (325)
                      +...+...+  .+..++|+||++  .+++.+++.+++.......    .. .....+...++.++++.+++..+..++.+
T Consensus       349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~----~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  423 (529)
T PRK15134        349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH----QP-TLSAAQREQQVIAVMEEVGLDPETRHRYP  423 (529)
T ss_pred             ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhc----cc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC
Confidence            866543321  124588999997  3677789998876543211    00 01122334567788999999534567777


Q ss_pred             CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      .+ |||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++ |.|||+||||++++..+ ||++++|++
T Consensus       424 ~~-LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~-~d~i~~l~~  501 (529)
T PRK15134        424 AE-FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRAL-CHQVIVLRQ  501 (529)
T ss_pred             cc-CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHh-cCeEEEEEC
Confidence            65 9999999999999999999999999999999999999999999999764 88999999999999887 699999999


Q ss_pred             CEEEEEcCcc
Q 020520          300 GRIIKTGDAS  309 (325)
Q Consensus       300 G~iv~~g~~~  309 (325)
                      |++++.|+++
T Consensus       502 G~i~~~~~~~  511 (529)
T PRK15134        502 GEVVEQGDCE  511 (529)
T ss_pred             CEEEEEcCHH
Confidence            9999998764

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=9.2e-46  Score=335.03  Aligned_cols=214  Identities=19%  Similarity=0.338  Sum_probs=169.1

Q ss_pred             EEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           78 LQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        78 l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ++++|+++.|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++...+....+ .
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~   77 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF--YDPTSGEILLDGVDIRDLNLRWLR-S   77 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc--CCCCCCEEEECCEehhhcCHHHHH-h
Confidence            4789999999642 24699999999999999999999999999999999998  679999999999987655443332 3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhc--CCccccccccCCCCCChHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERL--SMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LSgGqr  229 (325)
                      .++|++|++.+++ .++.+++.....       .  ....+...     .+.+.++.+  ++. ...++.+. +||||||
T Consensus        78 ~i~~~~q~~~~~~-~tv~e~l~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~-~LS~G~~  145 (238)
T cd03249          78 QIGLVSQEPVLFD-GTIAENIRYGKP-------D--ATDEEVEEAAKKANIHDFIMSLPDGYD-TLVGERGS-QLSGGQK  145 (238)
T ss_pred             hEEEECCchhhhh-hhHHHHhhccCC-------C--CCHHHHHHHHHHcChHHHHHhhccccc-eeeccCCc-cCCHHHH
Confidence            5889999987765 577777643211       0  00111111     122333333  332 23445554 5999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.+.+.|+++. +|.|||++|||++++. . ||++++|++|++++.|+.+
T Consensus       146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~-~d~v~~l~~G~i~~~~~~~  222 (238)
T cd03249         146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-N-ADLIAVLQNGQVVEQGTHD  222 (238)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-h-CCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999999987 6889999999999986 5 7999999999999988754

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=8.4e-46  Score=353.57  Aligned_cols=222  Identities=27%  Similarity=0.392  Sum_probs=198.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .+.+++++++|+|+  +..++++|||+|++||+.||+|+||||||||+++|.|+  |+|++|+|.|+|+++.-.++.+..
T Consensus         2 ~~~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~--~~P~~GeI~v~G~~v~~~sP~dA~   77 (501)
T COG3845           2 EPALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL--YQPDSGEIRVDGKEVRIKSPRDAI   77 (501)
T ss_pred             CceEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc--ccCCcceEEECCEEeccCCHHHHH
Confidence            45799999999998  37899999999999999999999999999999999998  899999999999999888888877


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +.||+||+|++.+++.+|+.||+..+....    ........+..+++.++.+++|+.-+ .+..+.. ||-||||||.|
T Consensus        78 ~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~----~~~~~~~~~~~~~i~~l~~~yGl~vd-p~~~V~d-LsVG~qQRVEI  151 (501)
T COG3845          78 RLGIGMVHQHFMLVPTLTVAENIILGLEPS----KGGLIDRRQARARIKELSERYGLPVD-PDAKVAD-LSVGEQQRVEI  151 (501)
T ss_pred             HcCCcEEeeccccccccchhhhhhhcCccc----cccccCHHHHHHHHHHHHHHhCCCCC-ccceeec-CCcchhHHHHH
Confidence            789999999999999999999998765321    11123455667788899999999643 5667765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      -+||+++|++|||||||+-|-|...+++++.|++++++|+|||+|||-++++..+ |||+-||++|+++...+
T Consensus       152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~i-aDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAI-ADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh-hCeeEEEeCCeEEeeec
Confidence            9999999999999999999999999999999999999999999999999999998 69999999999987655

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=2.4e-45  Score=335.69  Aligned_cols=214  Identities=24%  Similarity=0.320  Sum_probs=172.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC----CccEEEECCEeCCCCCHHH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV----TEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p----~~G~I~~~g~~i~~~~~~~  152 (325)
                      +|+++||+++| +  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  .+|    ++|+|.++|+++...   .
T Consensus         4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~~~~~G~i~~~g~~i~~~---~   75 (254)
T PRK10418          4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI--LPAGVRQTAGRVLLDGKPVAPC---A   75 (254)
T ss_pred             EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCCcCCEEEECCeecccc---c
Confidence            79999999999 2  4799999999999999999999999999999999998  567    999999999987532   1


Q ss_pred             HhhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc--cccccCCCCCChHH
Q 020520          153 RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD--FLNRNVNEGFSGGE  228 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~LSgGq  228 (325)
                      .....++|++|++.  +.+..++.+++......    .+..   .  ....+.+.++.+++...  .+++.+. .|||||
T Consensus        76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~----~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~~~-~LS~Gq  145 (254)
T PRK10418         76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLA----LGKP---A--DDATLTAALEAVGLENAARVLKLYPF-EMSGGM  145 (254)
T ss_pred             cccceEEEEecCCccccCccccHHHHHHHHHHH----cCCC---h--HHHHHHHHHHHcCCCChhhhhhcCCc-ccCHHH
Confidence            22245889999974  33345555554322111    1111   1  12456778899998531  3566665 499999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      +|||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++||+++.+..+ ||++++|++|++++.|+
T Consensus       146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~-~d~v~~l~~G~i~~~~~  224 (254)
T PRK10418        146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARL-ADDVAVMSHGRIVEQGD  224 (254)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh-CCEEEEEECCEEEEecC
Confidence            99999999999999999999999999999999999999998654 78999999999998877 69999999999999987


Q ss_pred             cc
Q 020520          308 AS  309 (325)
Q Consensus       308 ~~  309 (325)
                      ++
T Consensus       225 ~~  226 (254)
T PRK10418        225 VE  226 (254)
T ss_pred             HH
Confidence            65

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-45  Score=334.91  Aligned_cols=224  Identities=23%  Similarity=0.348  Sum_probs=178.1

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-C--CccEEEECCEeCCCCCHH
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-V--TEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-p--~~G~I~~~g~~i~~~~~~  151 (325)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+|+|+|+.... |  ++|+|.++|+++...+..
T Consensus         5 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   82 (259)
T PRK14260          5 IPAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN   82 (259)
T ss_pred             cceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence            347999999999963  57999999999999999999999999999999999983211 2  589999999987532111


Q ss_pred             -HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChH
Q 020520          152 -ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGG  227 (325)
Q Consensus       152 -~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgG  227 (325)
                       ...+..+++++|++.+++ .++.+++.......    ..  ....+....+.+.++.+++..   +.+++.+. .||||
T Consensus        83 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~----~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~G  154 (259)
T PRK14260         83 INRLRRQIGMVFQRPNPFP-MSIYENVAYGVRIS----AK--LPQADLDEIVESALKGAALWQEVKDKLNKSAL-GLSGG  154 (259)
T ss_pred             hHhhhhheEEEecccccCC-ccHHHHHHHHHHHh----cC--CCHHHHHHHHHHHHHHcCCcchhhhHhcCCcc-cCCHH
Confidence             122346899999998887 78888876543211    10  111222344566778887731   34556655 49999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe-----CCEE
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME-----DGRI  302 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~-----~G~i  302 (325)
                      |+|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++..+ ||++++|+     +|++
T Consensus       155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~-~d~i~~l~~~~~~~G~i  232 (259)
T PRK14260        155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRV-SDFTAFFSTDESRIGQM  232 (259)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-cCeEEEEeccCCCCceE
Confidence            99999999999999999999999999999999999999999865 58999999999999887 69999997     5999


Q ss_pred             EEEcCccH
Q 020520          303 IKTGDASI  310 (325)
Q Consensus       303 v~~g~~~~  310 (325)
                      ++.|+++.
T Consensus       233 ~~~~~~~~  240 (259)
T PRK14260        233 VEFGVTTQ  240 (259)
T ss_pred             EEeCCHHH
Confidence            99998764

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.1e-46  Score=315.74  Aligned_cols=229  Identities=23%  Similarity=0.326  Sum_probs=193.3

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      +++.+++++.+|++....+|+|+|++|.+||.++++||||||||||+++++|+  .+|..|+|.++|+++..-..+    
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf--~~P~~G~i~l~~r~i~gPgae----   75 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF--VTPSRGSIQLNGRRIEGPGAE----   75 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC--cCcccceEEECCEeccCCCcc----
Confidence            46889999999986545599999999999999999999999999999999998  789999999999998763321    


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                        -+.|||++.++|.+++.+|+.++...+       .+.+.+..+.+.+.+..+|+. ++.++.+.+ |||||||||.||
T Consensus        76 --rgvVFQ~~~LlPWl~~~dNvafgL~l~-------Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~q-LSGGmrQRvGiA  144 (259)
T COG4525          76 --RGVVFQNEALLPWLNVIDNVAFGLQLR-------GIEKAQRREIAHQMLALVGLE-GAEHKYIWQ-LSGGMRQRVGIA  144 (259)
T ss_pred             --ceeEeccCccchhhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHhCcc-cccccceEe-ecchHHHHHHHH
Confidence              246799999999999999998876543       233455667788889999996 566777765 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEe--CCEEEEEcCccHHH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIME--DGRIIKTGDASIAT  312 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~--~G~iv~~g~~~~~~  312 (325)
                      |||+.+|++|+||||+++||.-+++++.++|-++- ..|+.+++||||++++-.+ +++++||.  .|+|++.-+++...
T Consensus       145 RALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl-atrLvvlsp~pgRvv~~~~~df~r  223 (259)
T COG4525         145 RALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL-ATRLVVLSPGPGRVVERLPLDFAR  223 (259)
T ss_pred             HHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh-hheeEEecCCCceeeEecCCCHHH
Confidence            99999999999999999999999999999998865 4589999999999999877 79999996  58999988877554


Q ss_pred             HHHhCC-eecc
Q 020520          313 VLEEGG-YKAI  322 (325)
Q Consensus       313 ~~~~~~-~~~~  322 (325)
                      -+..++ .++|
T Consensus       224 R~aage~~RaI  234 (259)
T COG4525         224 RYAAGEPSRAI  234 (259)
T ss_pred             HhhcCCCcchh
Confidence            444433 3444

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-45  Score=339.07  Aligned_cols=220  Identities=22%  Similarity=0.280  Sum_probs=172.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++..    .....
T Consensus         6 ~l~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~----~~~~~   78 (272)
T PRK15056          6 GIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--VRLASGKISILGQPTRQ----ALQKN   78 (272)
T ss_pred             eEEEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEhHH----hhccc
Confidence            6999999999963 36799999999999999999999999999999999998  67999999999998642    12223


Q ss_pred             cEEEeccCCccCC--CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          157 GLFMSFQSPVEIP--GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       157 ~i~~~~Q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      .++|++|++.+..  ..++.+++......   ..+............+.++++.+++. +..++.+.+ ||||||||++|
T Consensus        79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgG~~qrv~l  153 (272)
T PRK15056         79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYG---HMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGE-LSGGQKKRVFL  153 (272)
T ss_pred             eEEEeccccccccCCCcchhhheeccccc---ccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCccc-CCHHHHHHHHH
Confidence            5889999975421  12344443221100   00000001122234566788999996 556777765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||++++..+ ||+++++ +|++++.|+++.
T Consensus       154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~-~d~v~~~-~G~i~~~g~~~~  227 (272)
T PRK15056        154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF-CDYTVMV-KGTVLASGPTET  227 (272)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEE-CCEEEeecCHHh
Confidence            9999999999999999999999999999999999976788999999999998887 6898766 899999987653

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1.4e-45  Score=318.61  Aligned_cols=173  Identities=26%  Similarity=0.410  Sum_probs=151.4

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++  +++|+++||++++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+ ... +..
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~-~~~-~~~   74 (173)
T cd03230           1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL--LKPDSGEIKVLGKDIKKEP-EEV-KRR   74 (173)
T ss_pred             CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcccch-Hhh-hcc
Confidence            478999999964  4799999999999999999999999999999999998  6789999999999886543 222 246


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.+++..++.+++.                                             |||||+||++||||
T Consensus        75 i~~~~q~~~~~~~~tv~~~~~---------------------------------------------LS~G~~qrv~lara  109 (173)
T cd03230          75 IGYLPEEPSLYENLTVRENLK---------------------------------------------LSGGMKQRLALAQA  109 (173)
T ss_pred             EEEEecCCccccCCcHHHHhh---------------------------------------------cCHHHHHHHHHHHH
Confidence            899999987766555443310                                             89999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      |+.+|++|||||||++||+.+++.+.+.|+++.++|.|+|++|||++++..+ +|++++|++|++
T Consensus       110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~-~d~i~~l~~g~i  173 (173)
T cd03230         110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL-CDRVAILNNGRI  173 (173)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEEeCCCC
Confidence            9999999999999999999999999999999976688999999999988876 699999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-45  Score=344.21  Aligned_cols=226  Identities=22%  Similarity=0.295  Sum_probs=179.1

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCCH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~~  150 (325)
                      ...+|+++|++++|.++.+.+|+|+||+|++||++||+|+||||||||+++|+|+...   .|++|+|.++|+++...+.
T Consensus        77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            3468999999999964445799999999999999999999999999999999998321   2679999999999863221


Q ss_pred             H-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHH-HHHhHHHHHHhcCCcc---ccccccCCCCCC
Q 020520          151 E-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE-FYAYLYPKLERLSMKT---DFLNRNVNEGFS  225 (325)
Q Consensus       151 ~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~---~~~~~~~~~~LS  225 (325)
                      . ...+..++++||+|.+|. .++.+|+.+....    .+   ....+ ..+.+.+.++.+++..   ...++... +||
T Consensus       157 ~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~----~~---~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~-~LS  227 (329)
T PRK14257        157 SSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRN----NG---INDRKILEKIVEKSLKSAALWDEVKDDLDKAGN-ALS  227 (329)
T ss_pred             chHhhhccEEEEecCCccCC-CcHHHHHHhHHHh----cC---CChHHHHHHHHHHHHHHcCCcchhhhhhhCCcc-cCC
Confidence            1 122346899999998875 6888888643211    01   11122 1233456677777631   22344444 599


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      |||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+..+ ||+|++|++|++++.
T Consensus       228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~-~Driivl~~G~i~e~  305 (329)
T PRK14257        228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRI-SDETVFFYQGWIEEA  305 (329)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999875 58999999999999887 699999999999999


Q ss_pred             cCccH
Q 020520          306 GDASI  310 (325)
Q Consensus       306 g~~~~  310 (325)
                      |+++.
T Consensus       306 g~~~~  310 (329)
T PRK14257        306 GETKT  310 (329)
T ss_pred             CCHHH
Confidence            98764

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.5e-45  Score=318.48  Aligned_cols=173  Identities=28%  Similarity=0.440  Sum_probs=149.8

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++..+.+++++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...++ ..
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~   77 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL--LRPTSGRVRLDGADISQWDPNELG-DH   77 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCeEEECCEEcccCCHHHHH-hh
Confidence            478999999974335699999999999999999999999999999999998  679999999999998776554433 35


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++. ++.+++                                              |||||+||++||||
T Consensus        78 i~~~~q~~~~~~~-tv~~~l----------------------------------------------LS~G~~qrv~la~a  110 (173)
T cd03246          78 VGYLPQDDELFSG-SIAENI----------------------------------------------LSGGQRQRLGLARA  110 (173)
T ss_pred             eEEECCCCccccC-cHHHHC----------------------------------------------cCHHHHHHHHHHHH
Confidence            8899999865542 332210                                              89999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      |+.+|++|||||||++||+.+++.+++.|++++++|.|||++|||++++. . ||++++|++|++
T Consensus       111 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l~~G~i  173 (173)
T cd03246         111 LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVLEDGRV  173 (173)
T ss_pred             HhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEEECCCC
Confidence            99999999999999999999999999999999767889999999999884 5 799999999874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-45  Score=336.37  Aligned_cols=221  Identities=21%  Similarity=0.306  Sum_probs=174.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-C--CCccEEEECCEeCCC--CC
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-E--VTEGSVVFKGENLLE--ME  149 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~--p~~G~I~~~g~~i~~--~~  149 (325)
                      .++|+++||+++|++  +++|+|+||+|++||+++|+|+||||||||+++|+|+... +  |++|+|.++|+++..  ..
T Consensus         8 ~~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   85 (264)
T PRK14243          8 ETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD   85 (264)
T ss_pred             ceEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence            458999999999964  5799999999999999999999999999999999997321 1  479999999998743  22


Q ss_pred             HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCCh
Q 020520          150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSG  226 (325)
Q Consensus       150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSg  226 (325)
                      .... +..+++++|++.+++ .++.+++.......    +..    .+..+.+.++++.+++..   +..++.+. +|||
T Consensus        86 ~~~~-~~~i~~v~q~~~~~~-~tv~enl~~~~~~~----~~~----~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LSg  154 (264)
T PRK14243         86 PVEV-RRRIGMVFQKPNPFP-KSIYDNIAYGARIN----GYK----GDMDELVERSLRQAALWDEVKDKLKQSGL-SLSG  154 (264)
T ss_pred             hHHH-hhhEEEEccCCcccc-ccHHHHHHhhhhhc----Ccc----hHHHHHHHHHHHHhCchhhHHHHhcCCcc-cCCH
Confidence            2222 235889999998777 48888875542110    110    111233445566666531   23455555 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe--------
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME--------  298 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~--------  298 (325)
                      ||+||++|||||+.+|++|||||||+|||+.+++.+.++|.++.+ +.|||++|||++++..+ ||++++|+        
T Consensus       155 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~-~d~v~~l~~~~~~~~~  232 (264)
T PRK14243        155 GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARV-SDMTAFFNVELTEGGG  232 (264)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHh-CCEEEEEecccccccc
Confidence            999999999999999999999999999999999999999999975 47999999999999887 69999998        


Q ss_pred             -CCEEEEEcCccH
Q 020520          299 -DGRIIKTGDASI  310 (325)
Q Consensus       299 -~G~iv~~g~~~~  310 (325)
                       +|++++.|+++.
T Consensus       233 ~~g~i~~~~~~~~  245 (264)
T PRK14243        233 RYGYLVEFDRTEK  245 (264)
T ss_pred             cCceEEEeCCHHH
Confidence             799999997653

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.7e-45  Score=320.56  Aligned_cols=178  Identities=23%  Similarity=0.361  Sum_probs=153.6

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++|++++|      +|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+.....
T Consensus         2 ~~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~   73 (182)
T cd03215           2 EPVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL--RPPASGEITLDGKPVTRRSPRDAI   73 (182)
T ss_pred             CcEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCccCHHHHH
Confidence            3479999999988      89999999999999999999999999999999998  679999999999998776543333


Q ss_pred             hccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          155 LAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       155 ~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                      +..++|++|++   .+++..++.+++....                                         .||||||||
T Consensus        74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-----------------------------------------~LS~G~~qr  112 (182)
T cd03215          74 RAGIAYVPEDRKREGLVLDLSVAENIALSS-----------------------------------------LLSGGNQQK  112 (182)
T ss_pred             hCCeEEecCCcccCcccCCCcHHHHHHHHh-----------------------------------------hcCHHHHHH
Confidence            44688999985   3555556555432110                                         099999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      ++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+++.|+|++|||++++..+ ||++++|++|++
T Consensus       113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~v~~l~~G~i  182 (182)
T cd03215         113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGL-CDRILVMYEGRI  182 (182)
T ss_pred             HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEecCCcC
Confidence            9999999999999999999999999999999999999876688999999999999887 699999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-45  Score=333.62  Aligned_cols=222  Identities=21%  Similarity=0.380  Sum_probs=180.7

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC------EeCCC
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG------ENLLE  147 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g------~~i~~  147 (325)
                      ..|+++++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  +.|++|+|.++|      .++..
T Consensus         7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~--~~~~~G~v~~~G~~~~~g~~~~~   82 (257)
T PRK14246          7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL--IEIYDSKIKVDGKVLYFGKDIFQ   82 (257)
T ss_pred             hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCcCceeEcCEEEECCccccc
Confidence            4678999999999964  6799999999999999999999999999999999998  678887766665      44443


Q ss_pred             CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020520          148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF  224 (325)
Q Consensus       148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L  224 (325)
                      .+.... +..++|++|++.+++..++.+++......    .+.  ....+....+.++++.+++..   +..++.+. .|
T Consensus        83 ~~~~~~-~~~i~~~~q~~~~~~~~tv~~nl~~~~~~----~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~L  154 (257)
T PRK14246         83 IDAIKL-RKEVGMVFQQPNPFPHLSIYDNIAYPLKS----HGI--KEKREIKKIVEECLRKVGLWKEVYDRLNSPAS-QL  154 (257)
T ss_pred             CCHHHH-hcceEEEccCCccCCCCcHHHHHHHHHHh----cCC--CCHHHHHHHHHHHHHHcCCCccchhhhcCCcc-cC
Confidence            333322 24588999999988888998887654221    111  112233456777888888842   34556665 49


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ +.|||++||+++++..+ ||++++|++|++++
T Consensus       155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~-~d~v~~l~~g~i~~  232 (257)
T PRK14246        155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARV-ADYVAFLYNGELVE  232 (257)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHh-CCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999864 58999999999998877 69999999999999


Q ss_pred             EcCcc
Q 020520          305 TGDAS  309 (325)
Q Consensus       305 ~g~~~  309 (325)
                      .|+.+
T Consensus       233 ~g~~~  237 (257)
T PRK14246        233 WGSSN  237 (257)
T ss_pred             ECCHH
Confidence            99765

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3e-45  Score=326.94  Aligned_cols=205  Identities=23%  Similarity=0.303  Sum_probs=171.8

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++|++++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...   .+
T Consensus         8 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~i~~~---~~   80 (214)
T PRK13543          8 APPLLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL--LHVESGQIQIDGKTATRG---DR   80 (214)
T ss_pred             CcceEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCCeeEEECCEEccch---hh
Confidence            3468999999999964  5799999999999999999999999999999999998  789999999999987542   11


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ...++|++|++.+++.+++.+++......    .+.   .   ....+.+.++.+++. +..++.+.. ||||||||++
T Consensus        81 -~~~i~~~~q~~~~~~~~t~~e~l~~~~~~----~~~---~---~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~  147 (214)
T PRK13543         81 -SRFMAYLGHLPGLKADLSTLENLHFLCGL----HGR---R---AKQMPGSALAIVGLA-GYEDTLVRQ-LSAGQKKRLA  147 (214)
T ss_pred             -hhceEEeecCcccccCCcHHHHHHHHHHh----cCC---c---HHHHHHHHHHHcCCh-hhccCChhh-CCHHHHHHHH
Confidence             23578899998888888888887654211    011   1   123456678889986 456777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      ||||++.+|++|||||||++||+.+++.+.+.|+++.++|.|||++|||++++..+ ++++++++.
T Consensus       148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~-~~~i~~l~~  212 (214)
T PRK13543        148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV-RTRMLTLEA  212 (214)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh-cceEEEEee
Confidence            99999999999999999999999999999999999877788999999999999887 699988763

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=4.2e-45  Score=399.13  Aligned_cols=273  Identities=16%  Similarity=0.263  Sum_probs=208.5

Q ss_pred             chHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCC----CCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCC
Q 020520           31 PALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQ----DEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEG  105 (325)
Q Consensus        31 ~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~G  105 (325)
                      ++..+..+...++.+..+.+|+.++++.++..........    .......|+++||+|+|++. ++++|+|+||+|++|
T Consensus      1115 ~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G 1194 (1466)
T PTZ00265       1115 YAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSK 1194 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCC
Confidence            4556666777888999999999998875432211111111    01122469999999999742 357999999999999


Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCC----------------------------------------------------
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEV----------------------------------------------------  133 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p----------------------------------------------------  133 (325)
                      +++|||||||||||||+++|+|+  |+|                                                    
T Consensus      1195 ~~vAIVG~SGsGKSTl~~LL~r~--ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265       1195 KTTAIVGETGSGKSTVMSLLMRF--YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh--CCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999998  666                                                    


Q ss_pred             --CccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHH
Q 020520          134 --TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKL  206 (325)
Q Consensus       134 --~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l  206 (325)
                        ++|+|++||.++..++...++. .+++|+|+|.+|. .|..+|+.++         .++.+.++..+     .+.+.+
T Consensus      1273 ~~~~G~I~idG~di~~~~~~~lR~-~i~~V~Qep~LF~-gTIreNI~~g---------~~~at~eeI~~A~k~A~l~~fI 1341 (1466)
T PTZ00265       1273 FKNSGKILLDGVDICDYNLKDLRN-LFSIVSQEPMLFN-MSIYENIKFG---------KEDATREDVKRACKFAAIDEFI 1341 (1466)
T ss_pred             CCCCCeEEECCEEHHhCCHHHHHh-hccEeCCCCcccc-ccHHHHHhcC---------CCCCCHHHHHHHHHHcCCHHHH
Confidence              6999999999999998776554 4889999999986 5888887654         22333333322     233445


Q ss_pred             HhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhH
Q 020520          207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRL  285 (325)
Q Consensus       207 ~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~  285 (325)
                      ..+..+.+..-..-+..||||||||++|||||+++|+|||||||||+||.++++.|.+.|.++. .+++|+|+|||++..
T Consensus      1342 ~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst 1421 (1466)
T PTZ00265       1342 ESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS 1421 (1466)
T ss_pred             HhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH
Confidence            5554332222223344699999999999999999999999999999999999999999999985 357899999999988


Q ss_pred             HhhhCCcEEEEEeC----CEEE-EEcCccHHHHHH-hCCee
Q 020520          286 LEFIKPTFIHIMED----GRII-KTGDASIATVLE-EGGYK  320 (325)
Q Consensus       286 ~~~~~~d~i~vl~~----G~iv-~~g~~~~~~~~~-~~~~~  320 (325)
                      +..  ||+|++|++    |+++ +.|+.  .++++ .+|.|
T Consensus      1422 i~~--aD~Ivvl~~~~~~G~iv~e~Gth--~eLl~~~~g~Y 1458 (1466)
T PTZ00265       1422 IKR--SDKIVVFNNPDRTGSFVQAHGTH--EELLSVQDGVY 1458 (1466)
T ss_pred             HHh--CCEEEEEeCCCCCCCEEEEecCH--HHHHhcCCChH
Confidence            765  699999999    9955 78965  46776 46654

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=5.1e-45  Score=328.21  Aligned_cols=214  Identities=22%  Similarity=0.364  Sum_probs=168.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|.++...+.... +.
T Consensus         2 ~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~-~~   77 (229)
T cd03254           2 EIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--YDPQKGQILIDGIDIRDISRKSL-RS   77 (229)
T ss_pred             eEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEeHHHcCHHHH-hh
Confidence            4789999999963 24699999999999999999999999999999999998  67899999999998865544332 24


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhc--CCccccccccCCCCCChHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERL--SMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqr  229 (325)
                      .++|++|++.+++. ++.+++.....         .....+..     ..+.+.++.+  ++. ...++.+. .||||||
T Consensus        78 ~i~~~~q~~~~~~~-tv~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~-~LS~G~~  145 (229)
T cd03254          78 MIGVVLQDTFLFSG-TIMENIRLGRP---------NATDEEVIEAAKEAGAHDFIMKLPNGYD-TVLGENGG-NLSQGER  145 (229)
T ss_pred             hEEEecCCchhhhh-HHHHHHhccCC---------CCCHHHHHHHHHHhChHHHHHhCccccc-CHhhcCCC-cCCHHHH
Confidence            58899999877764 77776643210         00111111     1223334443  332 23344454 5999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.+++.|+++. ++.|||++||+++++. . ||++++|++|++++.|+.+
T Consensus       146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~-~d~i~~l~~g~~~~~~~~~  222 (229)
T cd03254         146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-N-ADKILVLDDGKIIEEGTHD  222 (229)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-h-CCEEEEEeCCeEEEeCCHH
Confidence            99999999999999999999999999999999999999986 4789999999999885 4 6999999999999888653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.5e-45  Score=333.78  Aligned_cols=222  Identities=23%  Similarity=0.329  Sum_probs=178.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-----ccEEEECCEeCCCC-
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-----EGSVVFKGENLLEM-  148 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-----~G~I~~~g~~i~~~-  148 (325)
                      -++|+++|++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|+     +|+|.++|+++... 
T Consensus         5 ~~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--~~~~g~i~~~G~i~~~g~~i~~~~   80 (261)
T PRK14258          5 IPAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM--NELESEVRVEGRVEFFNQNIYERR   80 (261)
T ss_pred             cceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--cCCCCCccccceEEECCEEhhccc
Confidence            347999999999964  4699999999999999999999999999999999998  4564     89999999987422 


Q ss_pred             -CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCC
Q 020520          149 -EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGF  224 (325)
Q Consensus       149 -~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~L  224 (325)
                       +.... +..+++++|++.+++ .++.+++......    .+.  ....+....+.++++.+++..   +..++.+. .|
T Consensus        81 ~~~~~~-~~~i~~~~q~~~l~~-~tv~enl~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~L  151 (261)
T PRK14258         81 VNLNRL-RRQVSMVHPKPNLFP-MSVYDNVAYGVKI----VGW--RPKLEIDDIVESALKDADLWDEIKHKIHKSAL-DL  151 (261)
T ss_pred             cchHHh-hccEEEEecCCccCc-ccHHHHHHHHHHh----cCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCCcc-cC
Confidence             21222 345889999988877 7888887554211    111  011222345667788888731   23455555 59


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC----
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED----  299 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~----  299 (325)
                      ||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ ++.|||+||||++++..+ ||+|++|++    
T Consensus       152 SgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~-~d~i~~l~~~~~~  230 (261)
T PRK14258        152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL-SDFTAFFKGNENR  230 (261)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh-cCEEEEEccCCCc
Confidence            99999999999999999999999999999999999999999999864 488999999999999887 699999999    


Q ss_pred             -CEEEEEcCccH
Q 020520          300 -GRIIKTGDASI  310 (325)
Q Consensus       300 -G~iv~~g~~~~  310 (325)
                       |++++.|+++.
T Consensus       231 ~G~i~~~~~~~~  242 (261)
T PRK14258        231 IGQLVEFGLTKK  242 (261)
T ss_pred             CceEEEeCCHHH
Confidence             99999998764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.5e-45  Score=365.78  Aligned_cols=229  Identities=18%  Similarity=0.248  Sum_probs=184.5

Q ss_pred             CCcEEEEEEEEEECC-CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-CccEEEECCEeCCCCCHHH
Q 020520           75 QPLLQVTGLTAVIAE-SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~-~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-~~G~I~~~g~~i~~~~~~~  152 (325)
                      .++|+++|++++|+. +++.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+| ++|+|.++|+++.......
T Consensus       255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~~G~i~~~g~~~~~~~~~~  332 (500)
T TIGR02633       255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA--YPGKFEGNVFINGKPVDIRNPAQ  332 (500)
T ss_pred             CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC--CCCCCCeEEEECCEECCCCCHHH
Confidence            458999999999942 135699999999999999999999999999999999998  564 8999999999886544322


Q ss_pred             HhhccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          153 RSLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       153 ~~~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      ..+..+++++|++   .+++.+++.+++........  .........+....+.++++.+++.....++.+.. ||||||
T Consensus       333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGqk  409 (500)
T TIGR02633       333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF--CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR-LSGGNQ  409 (500)
T ss_pred             HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhh--ccCCcCCHHHHHHHHHHHHHhcCccCCCccCcccc-CCHHHH
Confidence            2234688999996   47788888888765321100  00001112223355778899999953346777765 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||+||||++++..+ ||++++|++|+++..++.+
T Consensus       410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~-~d~v~~l~~G~i~~~~~~~  488 (500)
T TIGR02633       410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGL-SDRVLVIGEGKLKGDFVNH  488 (500)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEEccc
Confidence            999999999999999999999999999999999999999987789999999999999887 6999999999999877543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=2.7e-45  Score=328.27  Aligned_cols=209  Identities=20%  Similarity=0.293  Sum_probs=167.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .++++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+...++ .
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~   78 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL--VELSSGSILIDGVDISKIGLHDLR-S   78 (221)
T ss_pred             cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEECCEEhHhCCHHHHh-h
Confidence            3789999999975445799999999999999999999999999999999998  679999999999988765544433 3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----------ccccccCCCCCCh
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----------DFLNRNVNEGFSG  226 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg  226 (325)
                      .++|++|++.+++ .++.+++....          ....    ..+.+.++.+++..          ...++.+. .|||
T Consensus        79 ~i~~~~q~~~l~~-~tv~enl~~~~----------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~-~LS~  142 (221)
T cd03244          79 RISIIPQDPVLFS-GTIRSNLDPFG----------EYSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGE-NLSV  142 (221)
T ss_pred             hEEEECCCCcccc-chHHHHhCcCC----------CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCC-cCCH
Confidence            5889999998765 47777653210          0111    12233344444321          11234444 5999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..  ||++++|++|++++.|
T Consensus       143 G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~i~~l~~g~~~~~~  219 (221)
T cd03244         143 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID--SDRILVLDKGRVVEFD  219 (221)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh--CCEEEEEECCeEEecC
Confidence            999999999999999999999999999999999999999999865 5899999999998864  6999999999999877


Q ss_pred             C
Q 020520          307 D  307 (325)
Q Consensus       307 ~  307 (325)
                      +
T Consensus       220 ~  220 (221)
T cd03244         220 S  220 (221)
T ss_pred             C
Confidence            5

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=4.1e-45  Score=327.90  Aligned_cols=210  Identities=26%  Similarity=0.322  Sum_probs=169.1

Q ss_pred             cEEEEEEEEEECC----C-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC--CE--eCCC
Q 020520           77 LLQVTGLTAVIAE----S-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK--GE--NLLE  147 (325)
Q Consensus        77 ~l~~~~ls~~y~~----~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~--g~--~i~~  147 (325)
                      ||+++||+++|+.    + .+.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++  |+  ++..
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~~~g~~~~~~~   78 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN--YLPDSGRILVRHEGAWVDLAQ   78 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEEecCCCccchhh
Confidence            5899999999963    1 24699999999999999999999999999999999998  67999999998  43  4444


Q ss_pred             CCHHH---HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020520          148 MEPEE---RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF  224 (325)
Q Consensus       148 ~~~~~---~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  224 (325)
                      .+...   .+...+++++|++.+++.+++.+++......    .+   ....+....+.++++.+++.....++.+. +|
T Consensus        79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~L  150 (224)
T TIGR02324        79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE----RG---VPREAARARARELLARLNIPERLWHLPPA-TF  150 (224)
T ss_pred             cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCchhhhhCCcc-cC
Confidence            44332   1234588999999888888988887653211    11   11222334567788999986333455665 49


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      |||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..+ ||+++.+
T Consensus       151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~-~d~i~~~  222 (224)
T TIGR02324       151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV-ADRVMDV  222 (224)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cceeEec
Confidence            99999999999999999999999999999999999999999999976688999999999988877 6888765

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=367.49  Aligned_cols=226  Identities=19%  Similarity=0.270  Sum_probs=182.0

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++|+++.|.    .+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...+.....
T Consensus       263 ~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~  336 (510)
T PRK09700        263 ETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV--DKRAGGEIRLNGKDISPRSPLDAV  336 (510)
T ss_pred             CcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCEECCCCCHHHHH
Confidence            45899999998762    389999999999999999999999999999999998  679999999999988654433222


Q ss_pred             hccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcC-C-CCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          155 LAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLG-Q-PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       155 ~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      +..++|++|++   .+++.+++.+++............ . ...........+.++++.+++..+..++.+.+ ||||||
T Consensus       337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~  415 (510)
T PRK09700        337 KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITE-LSGGNQ  415 (510)
T ss_pred             HCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcccc-CChHHH
Confidence            34688999984   577888998887653211000000 0 00011222345678899999953457777765 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||+||||++++..+ ||++++|++|++++.++.
T Consensus       416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITV-CDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh-CCEEEEEECCEEEEEecC
Confidence            999999999999999999999999999999999999999977789999999999999887 699999999999988765

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.5e-46  Score=333.73  Aligned_cols=186  Identities=30%  Similarity=0.505  Sum_probs=166.4

Q ss_pred             CCcEEEEEEEEEECCCc-------ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020520           75 QPLLQVTGLTAVIAESK-------QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE  147 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~-------~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~  147 (325)
                      .++++++||++.|+...       ..+++||||+|++||++||||+||||||||-|+|+||  .+|++|+|.|+|+++..
T Consensus         2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L--~~pt~G~i~f~g~~i~~   79 (268)
T COG4608           2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL--EEPTSGEILFEGKDITK   79 (268)
T ss_pred             CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC--cCCCCceEEEcCcchhh
Confidence            35899999999996422       3689999999999999999999999999999999998  78999999999998654


Q ss_pred             CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH
Q 020520          148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG  227 (325)
Q Consensus       148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG  227 (325)
                      ++                                             ..+..+++.+.|+.+|+..+++++.+++ ||||
T Consensus        80 ~~---------------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhe-lSGG  113 (268)
T COG4608          80 LS---------------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHE-LSGG  113 (268)
T ss_pred             cc---------------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcc-cCch
Confidence            32                                             0122345778899999988889999986 9999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+||++|||||+.+|+++++|||+|+||...+.+++++|.+++++ |.|.++||||+..+..+ +|||+||+.|+|++.|
T Consensus       114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i-sdri~VMy~G~iVE~g  192 (268)
T COG4608         114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIG  192 (268)
T ss_pred             hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh-cccEEEEecCceeEec
Confidence            999999999999999999999999999999999999999999865 89999999999999988 6999999999999999


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +.+
T Consensus       193 ~~~  195 (268)
T COG4608         193 PTE  195 (268)
T ss_pred             CHH
Confidence            765

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2.9e-45  Score=341.52  Aligned_cols=226  Identities=25%  Similarity=0.395  Sum_probs=194.7

Q ss_pred             CCCcEEEEEEEEEECCC---------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020520           74 SQPLLQVTGLTAVIAES---------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN  144 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~---------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~  144 (325)
                      ..+.++.++|.+.|+-.         ...+++++||++++||.+||||+||||||||-++|.++  . +.+|+|.|+|++
T Consensus       273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL--~-~s~G~I~F~G~~  349 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL--I-PSQGEIRFDGQD  349 (534)
T ss_pred             CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh--c-CcCceEEECCcc
Confidence            46689999999999521         13589999999999999999999999999999999997  3 456999999999


Q ss_pred             CCCCCHHHHh--hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC
Q 020520          145 LLEMEPEERS--LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV  220 (325)
Q Consensus       145 i~~~~~~~~~--~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  220 (325)
                      +..++.++.+  +..+-+|||||+  +-|.+++.+.+..+...     ..+..+..+...++.++|+.+|+++...++++
T Consensus       350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v-----h~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP  424 (534)
T COG4172         350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV-----HEPKLSAAERDQRVIEALEEVGLDPATRNRYP  424 (534)
T ss_pred             ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh-----cCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC
Confidence            9988765422  234667899996  56778888877655432     23345567777889999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      ++ +|||||||++||||++.+|++++||||||+||...+.++.++|+++.++ |.+.++||||+..+..+ |++|+||++
T Consensus       425 hE-FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl-~~~viVm~~  502 (534)
T COG4172         425 HE-FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRAL-CHRVIVMRD  502 (534)
T ss_pred             cc-cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHh-hceEEEEeC
Confidence            86 9999999999999999999999999999999999999999999999754 88999999999999988 699999999


Q ss_pred             CEEEEEcCcc
Q 020520          300 GRIIKTGDAS  309 (325)
Q Consensus       300 G~iv~~g~~~  309 (325)
                      |+||+.|+.+
T Consensus       503 GkiVE~G~~~  512 (534)
T COG4172         503 GKIVEQGPTE  512 (534)
T ss_pred             CEEeeeCCHH
Confidence            9999999875

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.7e-46  Score=326.72  Aligned_cols=215  Identities=21%  Similarity=0.312  Sum_probs=190.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ++++++|+++|+.  +.+++|+||++++|++.|++|+|||||||.+|+|.|+  +.|++|+|.|+|.++...   ..  .
T Consensus         2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl--le~~~G~I~~~g~~~~~~---~~--~   72 (300)
T COG4152           2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--LEPTEGEITWNGGPLSQE---IK--N   72 (300)
T ss_pred             ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc--CCccCceEEEcCcchhhh---hh--h
Confidence            6899999999964  7899999999999999999999999999999999998  789999999999987532   22  3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .|+|.|.+..+|+.+++.+.+.+....       ..+...+...++..+|+++++. ....+++. +||.|++|++.+..
T Consensus        73 rIGyLPEERGLy~k~tv~dql~yla~L-------kGm~~~e~~~~~~~wLer~~i~-~~~~~kIk-~LSKGnqQKIQfis  143 (300)
T COG4152          73 RIGYLPEERGLYPKMTVEDQLKYLAEL-------KGMPKAEIQKKLQAWLERLEIV-GKKTKKIK-ELSKGNQQKIQFIS  143 (300)
T ss_pred             hcccChhhhccCccCcHHHHHHHHHHh-------cCCcHHHHHHHHHHHHHhcccc-ccccchHH-HhhhhhhHHHHHHH
Confidence            488999999999999999887665432       2234567778889999999996 45666665 59999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +++++|+++|||||+|||||.+.+.+.+.+.+++++|.|||++||.|+-++.+ ||++++|++|+.|.+|+.+.
T Consensus       144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeL-CD~llmL~kG~~V~~G~v~~  216 (300)
T COG4152         144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEEL-CDRLLMLKKGQTVLYGTVED  216 (300)
T ss_pred             HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHH-hhhhheecCCceEEeccHHH
Confidence            99999999999999999999999999999999999999999999999999998 69999999999999998764

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=6.3e-45  Score=322.98  Aligned_cols=203  Identities=23%  Similarity=0.285  Sum_probs=166.1

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ..++++|++++|+...+.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+.... +
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~-~   81 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF--LEAEEGKIEIDGIDISTIPLEDL-R   81 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCeEEECCEEhHHCCHHHH-H
Confidence            46999999999974334799999999999999999999999999999999998  67999999999998866554433 2


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|++|++.+++. ++.+++....          .....    .+.+.++        .++.+. .|||||+||++||
T Consensus        82 ~~i~~v~q~~~~~~~-tv~~~l~~~~----------~~~~~----~~~~~l~--------~~~~~~-~LS~G~~qrv~la  137 (207)
T cd03369          82 SSLTIIPQDPTLFSG-TIRSNLDPFD----------EYSDE----EIYGALR--------VSEGGL-NLSQGQRQLLCLA  137 (207)
T ss_pred             hhEEEEecCCcccCc-cHHHHhcccC----------CCCHH----HHHHHhh--------ccCCCC-cCCHHHHHHHHHH
Confidence            368999999987764 8877763210          01111    1223332        233444 5999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+.+|++|||||||++||+.+++.++++|+++. ++.|+|++||+++++..  +|++++|++|++++.|++
T Consensus       138 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~--~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         138 RALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID--YDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh--CCEEEEEECCEEEecCCC
Confidence            99999999999999999999999999999999985 47899999999998864  599999999999887753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=3.6e-45  Score=337.84  Aligned_cols=211  Identities=17%  Similarity=0.233  Sum_probs=173.6

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .|+++||+++|+.+...+|+|+||+|++||+++|+|+||||||||+++|+|+  ++ ++|+|.++|.++...+...++ .
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl--~~-~~G~I~i~g~~i~~~~~~~lr-~   77 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--LN-TEGDIQIDGVSWNSVPLQKWR-K   77 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh--cC-CCcEEEECCEEhhhCCHHHHh-h
Confidence            3789999999964446799999999999999999999999999999999998  44 789999999998776655543 3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC----------CCCCh
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN----------EGFSG  226 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------~~LSg  226 (325)
                      .++|+||++.+|+. ++.+++...        ..  ...    +.+.+.++.+++. +..++.+.          ..|||
T Consensus        78 ~i~~v~q~~~lf~~-tv~~nl~~~--------~~--~~~----~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~  141 (275)
T cd03289          78 AFGVIPQKVFIFSG-TFRKNLDPY--------GK--WSD----EEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSH  141 (275)
T ss_pred             hEEEECCCcccchh-hHHHHhhhc--------cC--CCH----HHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCH
Confidence            58899999998874 777776321        00  111    2345566777775 33444332          24999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |||||++|||||+.+|+||||||||++||+.+++.+.+.|+++. +++|||+|||+++.+..  ||+|++|++|++++.|
T Consensus       142 G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~--~dri~vl~~G~i~~~g  218 (275)
T cd03289         142 GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE--CQRFLVIEENKVRQYD  218 (275)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHh--CCEEEEecCCeEeecC
Confidence            99999999999999999999999999999999999999999875 47899999999998864  6999999999999999


Q ss_pred             CccH
Q 020520          307 DASI  310 (325)
Q Consensus       307 ~~~~  310 (325)
                      +++.
T Consensus       219 ~~~~  222 (275)
T cd03289         219 SIQK  222 (275)
T ss_pred             CHHH
Confidence            8763

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=5.3e-45  Score=320.16  Aligned_cols=186  Identities=24%  Similarity=0.317  Sum_probs=157.7

Q ss_pred             cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .|+++|+++.|++.  ++++|+++||+|++||+++|+||||||||||+++|+|+...+|++|+|.++|+++.    ... 
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~-   77 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNF-   77 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHh-
Confidence            68999999999642  25699999999999999999999999999999999997323589999999999874    122 


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ...+++++|++.+++..++.+++.....                       ++               .|||||+||++|
T Consensus        78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------------------~~---------------~LSgGe~qrv~l  119 (192)
T cd03232          78 QRSTGYVEQQDVHSPNLTVREALRFSAL-----------------------LR---------------GLSVEQRKRLTI  119 (192)
T ss_pred             hhceEEecccCccccCCcHHHHHHHHHH-----------------------Hh---------------cCCHHHhHHHHH
Confidence            2357899999888887888777543210                       00               399999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH-HhhhCCcEEEEEeC-CEEEEEc
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMED-GRIIKTG  306 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-~~~~~~d~i~vl~~-G~iv~~g  306 (325)
                      ||||+.+|++|||||||++||+.+++.+++.|++++++|.|||++|||++. +... +|++++|++ |++++.|
T Consensus       120 a~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~-~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEK-FDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             HHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhh-CCEEEEEcCCCeEEeCC
Confidence            999999999999999999999999999999999987668899999999984 5565 699999999 9998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1e-44  Score=327.68  Aligned_cols=213  Identities=23%  Similarity=0.351  Sum_probs=169.4

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...+...++ ..
T Consensus         1 l~~~~l~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~v~~~g~~~~~~~~~~~~-~~   76 (236)
T cd03253           1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF--YDVSSGSILIDGQDIREVTLDSLR-RA   76 (236)
T ss_pred             CEEEEEEEEeCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCEEEECCEEhhhCCHHHHH-hh
Confidence            478999999963 25699999999999999999999999999999999998  679999999999988765544333 35


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERL--SMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      ++|++|++.+++ .++.+++.....         .....+..     ..+.+.++.+  ++. ...++.+. .|||||||
T Consensus        77 i~~~~q~~~~~~-~tv~~nl~~~~~---------~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~-~LS~G~~~  144 (236)
T cd03253          77 IGVVPQDTVLFN-DTIGYNIRYGRP---------DATDEEVIEAAKAAQIHDKIMRFPDGYD-TIVGERGL-KLSGGEKQ  144 (236)
T ss_pred             EEEECCCChhhc-chHHHHHhhcCC---------CCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCC-cCCHHHHH
Confidence            889999998775 588777644311         00111111     1122333444  222 23344454 59999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+|||||+.+|++|||||||+|||+.+++.+.+.|.++.+ |.|||++||+++++..  ||++++|++|++++.|+.+
T Consensus       145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~--~d~~~~l~~g~i~~~~~~~  220 (236)
T cd03253         145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN--ADKIIVLKDGRIVERGTHE  220 (236)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh--CCEEEEEECCEEEeeCCHH
Confidence            99999999999999999999999999999999999999976 8899999999998864  6999999999999888754

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.6e-47  Score=323.15  Aligned_cols=221  Identities=21%  Similarity=0.326  Sum_probs=191.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      |++++||+++|++  +.+++++|++|++|.+++|+|||||||||||.+++.|  .+.++|+|+++|.++..++.+..++.
T Consensus         1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL--~~~d~G~i~i~g~~~~~~~s~~LAk~   76 (252)
T COG4604           1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL--LKKDSGEITIDGLELTSTPSKELAKK   76 (252)
T ss_pred             CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh--ccccCceEEEeeeecccCChHHHHHH
Confidence            6899999999964  7899999999999999999999999999999999998  67899999999999999887776543


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                       +...-|.......+|+.+.+.++..+..  .+..   ..+.+..+.++++.+.+. ++.++...+ ||||||||..||+
T Consensus        77 -lSILkQ~N~i~~rlTV~dLv~FGRfPYS--qGRl---t~eD~~~I~~aieyl~L~-~l~dryLd~-LSGGQrQRAfIAM  148 (252)
T COG4604          77 -LSILKQENHINSRLTVRDLVGFGRFPYS--QGRL---TKEDRRIINEAIEYLHLE-DLSDRYLDE-LSGGQRQRAFIAM  148 (252)
T ss_pred             -HHHHHhhchhhheeEHHHHhhcCCCccc--CCCC---chHHHHHHHHHHHHhccc-chHHHhHHh-cccchhhhhhhhe
Confidence             3444577777777899998877643321  1222   234566788889999996 677888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      .++++.+.++||||.++||..+...+++.|++++++ |+||++|-||.+++..+ +|+|+-|++|+++..|+++.
T Consensus       149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y-sD~IVAlK~G~vv~~G~~~e  222 (252)
T COG4604         149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY-SDHIVALKNGKVVKQGSPDE  222 (252)
T ss_pred             eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh-hhheeeecCCEEEecCCHHH
Confidence            999999999999999999999999999999999876 99999999999999987 79999999999999999874

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.9e-45  Score=402.61  Aligned_cols=268  Identities=18%  Similarity=0.207  Sum_probs=204.6

Q ss_pred             hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCC-CCCCC--CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020520           30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSS-DGQDE--KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE  106 (325)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~--~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge  106 (325)
                      .++.++......+.....+.+|+.+.++.+++...... ..+..  +....|+++||+++|+++.+++|+|+||+|++||
T Consensus      1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~Ge 1266 (1622)
T PLN03130       1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSE 1266 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCC
Confidence            34444555556678888889999988765554321111 11111  1234799999999997544579999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      .+||+|+||||||||+++|.|+  ++|++|+|.+||.++..++....++ .+++++|+|.+|.+ |..+|+....     
T Consensus      1267 kVaIVGrSGSGKSTLl~lL~rl--~~p~~G~I~IDG~dI~~i~l~~LR~-~IsiVpQdp~LF~G-TIreNLd~~~----- 1337 (1622)
T PLN03130       1267 KVGIVGRTGAGKSSMLNALFRI--VELERGRILIDGCDISKFGLMDLRK-VLGIIPQAPVLFSG-TVRFNLDPFN----- 1337 (1622)
T ss_pred             EEEEECCCCCCHHHHHHHHhCc--CCCCCceEEECCEecccCCHHHHHh-ccEEECCCCccccc-cHHHHhCcCC-----
Confidence            9999999999999999999998  8899999999999999998877654 48899999999986 8888875321     


Q ss_pred             hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                           ..++++.++.     +.+.++.++.+.+..-..-+.+||||||||++|||||+++|+|||||||||+||.++.+.
T Consensus      1338 -----~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~ 1412 (1622)
T PLN03130       1338 -----EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412 (1622)
T ss_pred             -----CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence                 1223332222     223333332221111122234699999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh
Q 020520          262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE  316 (325)
Q Consensus       262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~  316 (325)
                      |.+.|++..+ ++|+|+|+|+++.+..  +|+|+||++|+|++.|+++  +++++
T Consensus      1413 Iq~~I~~~~~-~~TvI~IAHRL~tI~~--~DrIlVLd~G~IvE~Gt~~--eLl~~ 1462 (1622)
T PLN03130       1413 IQKTIREEFK-SCTMLIIAHRLNTIID--CDRILVLDAGRVVEFDTPE--NLLSN 1462 (1622)
T ss_pred             HHHHHHHHCC-CCEEEEEeCChHHHHh--CCEEEEEECCEEEEeCCHH--HHHhC
Confidence            9999998754 6899999999998875  6999999999999999875  45554

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=6.3e-45  Score=320.19  Aligned_cols=185  Identities=30%  Similarity=0.348  Sum_probs=158.3

Q ss_pred             cEEEEEEEEEECCC----cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC--CCCccEEEECCEeCCCCCH
Q 020520           77 LLQVTGLTAVIAES----KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY--EVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        77 ~l~~~~ls~~y~~~----~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~--~p~~G~I~~~g~~i~~~~~  150 (325)
                      .++++||+++|++.    .+.+|+++||+|++||+++|+||||||||||+++|+|+  +  +|++|+|.++|+++...  
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl--~~~~~~~G~i~~~g~~~~~~--   78 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR--RTGLGVSGEVLINGRPLDKR--   78 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCceEEEECCEeCchH--
Confidence            58999999999742    25799999999999999999999999999999999998  6  79999999999987541  


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                       . .+..+++++|++.+++..++.+++....                   .    +       .        .|||||+|
T Consensus        79 -~-~~~~i~~~~q~~~~~~~~t~~~~i~~~~-------------------~----~-------~--------~LS~G~~q  118 (194)
T cd03213          79 -S-FRKIIGYVPQDDILHPTLTVRETLMFAA-------------------K----L-------R--------GLSGGERK  118 (194)
T ss_pred             -h-hhheEEEccCcccCCCCCcHHHHHHHHH-------------------H----h-------c--------cCCHHHHH
Confidence             2 2235889999998888778776653210                   0    0       0        39999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh-HHhhhCCcEEEEEeCCEEEEEc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR-LLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~-~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++.|||++|||++ .+..+ +|++++|++|++++.|
T Consensus       119 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~-~d~v~~l~~G~i~~~~  194 (194)
T cd03213         119 RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL-FDKLLLLSQGRVIYFG  194 (194)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh-cCEEEEEeCCEEEecC
Confidence            999999999999999999999999999999999999998766899999999986 56666 6999999999998654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=3.2e-45  Score=317.74  Aligned_cols=175  Identities=26%  Similarity=0.449  Sum_probs=151.0

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC--HHHHhh
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME--PEERSL  155 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~--~~~~~~  155 (325)
                      ++++|++++|++  +++++++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+  ... .+
T Consensus         1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~   75 (178)
T cd03229           1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL--EEPDSGSILIDGEDLTDLEDELPP-LR   75 (178)
T ss_pred             CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccchhHHH-Hh
Confidence            478999999964  5799999999999999999999999999999999998  6789999999999987654  222 23


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+++++|++.+++..++.+++.                                .           .||||||||++||
T Consensus        76 ~~i~~~~q~~~~~~~~t~~~~l~--------------------------------~-----------~lS~G~~qr~~la  112 (178)
T cd03229          76 RRIGMVFQDFALFPHLTVLENIA--------------------------------L-----------GLSGGQQQRVALA  112 (178)
T ss_pred             hcEEEEecCCccCCCCCHHHhee--------------------------------e-----------cCCHHHHHHHHHH
Confidence            46889999987665555433210                                0           0999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      |||+.+|++|||||||+|||+.++..+.++|++++++ +.|+|++|||++++..+ +|++++|++|+
T Consensus       113 ~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~g~  178 (178)
T cd03229         113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL-ADRVVVLRDGK  178 (178)
T ss_pred             HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEeCCC
Confidence            9999999999999999999999999999999999876 78999999999999877 69999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=4.6e-45  Score=316.68  Aligned_cols=178  Identities=29%  Similarity=0.431  Sum_probs=150.6

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|++++|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+  .+|++|+|.++|+++... .... +..
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~-~~~~-~~~   76 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD--LKPQQGEITLDGVPVSDL-EKAL-SSL   76 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCEEEECCEEHHHH-HHHH-Hhh
Confidence            478999999974323699999999999999999999999999999999998  679999999999987543 2222 235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.+++ .++.+++                                          +. .|||||+||++||||
T Consensus        77 i~~~~q~~~~~~-~tv~~~i------------------------------------------~~-~LS~G~~qrv~lara  112 (178)
T cd03247          77 ISVLNQRPYLFD-TTLRNNL------------------------------------------GR-RFSGGERQRLALARI  112 (178)
T ss_pred             EEEEccCCeeec-ccHHHhh------------------------------------------cc-cCCHHHHHHHHHHHH
Confidence            888999886543 2332221                                          22 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+.+|++|||||||++||+.+++.+++.|+++. ++.|||++|||++++. . +|++++|++|++++.|
T Consensus       113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~-~d~~~~l~~g~i~~~~  178 (178)
T cd03247         113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-H-MDKILFLENGKIIMQG  178 (178)
T ss_pred             HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-h-CCEEEEEECCEEEecC
Confidence            999999999999999999999999999999985 4789999999999986 4 6999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-44  Score=328.68  Aligned_cols=221  Identities=23%  Similarity=0.335  Sum_probs=177.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-C--CCccEEEECCEeCCCCC--HH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-E--VTEGSVVFKGENLLEME--PE  151 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~--p~~G~I~~~g~~i~~~~--~~  151 (325)
                      +++++||++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+... +  |++|+|.++|+++...+  ..
T Consensus         3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   80 (250)
T PRK14266          3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV   80 (250)
T ss_pred             EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence            5899999999963  5799999999999999999999999999999999997321 2  48999999999886422  22


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGE  228 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGq  228 (325)
                      .. +..++|++|++.+|+. ++.+++......    .+.  ........++.+.++.+++..   +..++.+. .|||||
T Consensus        81 ~~-~~~i~~~~q~~~~~~~-t~~~nl~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-~LS~Gq  151 (250)
T PRK14266         81 EL-RKKVGMVFQKPNPFPK-SIFDNVAYGLRI----HGE--DDEDFIEERVEESLKAAALWDEVKDKLDKSAL-GLSGGQ  151 (250)
T ss_pred             HH-hhheEEEecCCccCcc-hHHHHHHhHHhh----cCC--CCHHHHHHHHHHHHHHcCCchhHHHHHhCCcc-cCCHHH
Confidence            22 3468999999988875 888887554321    111  111223355667788887732   23455555 499999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||++|||||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++||+++++..+ +|++++|++|++++.|++
T Consensus       152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~-~~~i~~l~~G~i~~~g~~  229 (250)
T PRK14266        152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRV-SKYTSFFLNGEIIESGLT  229 (250)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhh-cCEEEEEECCeEEEeCCH
Confidence            9999999999999999999999999999999999999999864 68999999999999887 699999999999999986


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       230 ~~  231 (250)
T PRK14266        230 DQ  231 (250)
T ss_pred             HH
Confidence            54

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-44  Score=331.21  Aligned_cols=225  Identities=23%  Similarity=0.312  Sum_probs=177.4

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCC-
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEM-  148 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~-  148 (325)
                      ...++|+++|++++|++  +++|+|+||+|++||+++|+|+||||||||+++|+|+....   +++|+|.++|.++... 
T Consensus        12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~   89 (265)
T PRK14252         12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS   89 (265)
T ss_pred             CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence            34668999999999964  57999999999999999999999999999999999983211   2799999999876421 


Q ss_pred             ---CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCC
Q 020520          149 ---EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNE  222 (325)
Q Consensus       149 ---~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~  222 (325)
                         ....+ +..+++++|++.+++. ++.+++......    .+..  ......+.+.++++.+++..   +..++.+. 
T Consensus        90 ~~~~~~~~-~~~i~~~~q~~~~~~~-tv~eni~~~~~~----~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-  160 (265)
T PRK14252         90 PEVDPIEV-RMRISMVFQKPNPFPK-SIFENVAYGLRI----RGVK--RRSILEERVENALRNAALWDEVKDRLGDLAF-  160 (265)
T ss_pred             cccCHHHH-hccEEEEccCCcCCcc-hHHHHHHhHHHH----cCCC--hHHHHHHHHHHHHHHcCCchhhhHHHhCCcc-
Confidence               12222 3468899999988875 888887654321    1111  01112234556667776531   23455555 


Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      .|||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||+||||++++..+ ||++++|++|++
T Consensus       161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~-~d~i~~l~~G~i  238 (265)
T PRK14252        161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARV-SDYTAYMYMGEL  238 (265)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHh-CCEEEEEECCEE
Confidence            4999999999999999999999999999999999999999999999865 58999999999999877 699999999999


Q ss_pred             EEEcCccH
Q 020520          303 IKTGDASI  310 (325)
Q Consensus       303 v~~g~~~~  310 (325)
                      ++.|+.+.
T Consensus       239 ~~~g~~~~  246 (265)
T PRK14252        239 IEFGATDT  246 (265)
T ss_pred             EEeCCHHH
Confidence            99998653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=6e-45  Score=364.74  Aligned_cols=223  Identities=24%  Similarity=0.352  Sum_probs=181.9

Q ss_pred             CCcEEEEEEEEEECC---CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC-CEe---CCC
Q 020520           75 QPLLQVTGLTAVIAE---SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK-GEN---LLE  147 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~---~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~-g~~---i~~  147 (325)
                      .++|+++||+++|++   +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++ |.+   +..
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~g~~~~~~~~  354 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV--LEPTSGEVNVRVGDEWVDMTK  354 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEEecCCccccccc
Confidence            568999999999952   235699999999999999999999999999999999998  67899999996 643   222


Q ss_pred             CCHH--HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----ccccccCC
Q 020520          148 MEPE--ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----DFLNRNVN  221 (325)
Q Consensus       148 ~~~~--~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~  221 (325)
                      .+..  ...+..++|++|++.+++.+++.+++......     ..   ...+...++.++++.+++..    +.+++.+.
T Consensus       355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-----~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  426 (520)
T TIGR03269       355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-----EL---PDELARMKAVITLKMVGFDEEKAEEILDKYPD  426 (520)
T ss_pred             cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-----CC---CHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence            2211  11123588999999888888999888654211     11   11222345677899999953    24677776


Q ss_pred             CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      + |||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||+||||++++..+ ||++++|++|
T Consensus       427 ~-LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~-~d~i~~l~~G  504 (520)
T TIGR03269       427 E-LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV-CDRAALMRDG  504 (520)
T ss_pred             h-CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh-CCEEEEEECC
Confidence            5 9999999999999999999999999999999999999999999999754 88999999999999887 6999999999


Q ss_pred             EEEEEcCcc
Q 020520          301 RIIKTGDAS  309 (325)
Q Consensus       301 ~iv~~g~~~  309 (325)
                      ++++.|+++
T Consensus       505 ~i~~~g~~~  513 (520)
T TIGR03269       505 KIVKIGDPE  513 (520)
T ss_pred             EEEEECCHH
Confidence            999988764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.5e-44  Score=397.12  Aligned_cols=265  Identities=16%  Similarity=0.217  Sum_probs=201.5

Q ss_pred             hHhhhhhhhhhhhccHHHHHHHhhccCCCCCC-CCCCCCC--CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEE
Q 020520           34 PLLCRRSNYHRHHLSLNRVTAALSAVDSPLKS-SSDGQDE--KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAI  110 (325)
Q Consensus        34 ~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~l  110 (325)
                      .+......++....+.+|+.+.++.+++.... ....+..  +....|+++||+++|+++.+++|+|+||+|++||.+||
T Consensus      1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaI 1267 (1495)
T PLN03232       1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGV 1267 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEE
Confidence            33344456778888899999887655443221 1111111  12346999999999965446799999999999999999


Q ss_pred             EcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC
Q 020520          111 MGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ  190 (325)
Q Consensus       111 vG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (325)
                      +|+||||||||+++|.|+  ++|++|+|.+||.++..++...+++ .+++++|+|.+|++ |..+|+....         
T Consensus      1268 VG~SGSGKSTL~~lL~rl--~~p~~G~I~IdG~di~~i~~~~lR~-~i~iVpQdp~LF~g-TIr~NL~~~~--------- 1334 (1495)
T PLN03232       1268 VGRTGAGKSSMLNALFRI--VELEKGRIMIDDCDVAKFGLTDLRR-VLSIIPQSPVLFSG-TVRFNIDPFS--------- 1334 (1495)
T ss_pred             ECCCCCCHHHHHHHHhCC--CcCCCceEEECCEEhhhCCHHHHHh-hcEEECCCCeeeCc-cHHHHcCCCC---------
Confidence            999999999999999998  7899999999999999988876554 48899999999986 8888874321         


Q ss_pred             CCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH
Q 020520          191 PEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA  265 (325)
Q Consensus       191 ~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~  265 (325)
                       +.++++.++.     +.+.++.++.+.+..-..-+.+||||||||++|||||+++|+|||||||||+||.++.+.|.+.
T Consensus      1335 -~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~ 1413 (1495)
T PLN03232       1335 -EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT 1413 (1495)
T ss_pred             -CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence             1223332222     1222333322111111222346999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhC
Q 020520          266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG  317 (325)
Q Consensus       266 L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~  317 (325)
                      |++.. +++|+|+|+|+++.+..  +|+|+||++|+|++.|+++  +++++.
T Consensus      1414 L~~~~-~~~TvI~IAHRl~ti~~--~DrIlVL~~G~ivE~Gt~~--eLl~~~ 1460 (1495)
T PLN03232       1414 IREEF-KSCTMLVIAHRLNTIID--CDKILVLSSGQVLEYDSPQ--ELLSRD 1460 (1495)
T ss_pred             HHHHc-CCCEEEEEeCCHHHHHh--CCEEEEEECCEEEEECCHH--HHHhCC
Confidence            99875 46899999999988876  6999999999999999875  455554

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=2.7e-45  Score=318.76  Aligned_cols=179  Identities=28%  Similarity=0.463  Sum_probs=151.2

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL  158 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i  158 (325)
                      +++|++++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...++ ..+
T Consensus         1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~~~-~~i   75 (180)
T cd03214           1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--LKPSSGEILLDGKDLASLSPKELA-RKI   75 (180)
T ss_pred             CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCcCCHHHHH-HHH
Confidence            47899999964  5799999999999999999999999999999999998  679999999999998765543322 234


Q ss_pred             EEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH
Q 020520          159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA  238 (325)
Q Consensus       159 ~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL  238 (325)
                      +|+||                                         +++.+++. +..++.+. .|||||+||++|||||
T Consensus        76 ~~~~q-----------------------------------------~l~~~gl~-~~~~~~~~-~LS~G~~qrl~laral  112 (180)
T cd03214          76 AYVPQ-----------------------------------------ALELLGLA-HLADRPFN-ELSGGERQRVLLARAL  112 (180)
T ss_pred             hHHHH-----------------------------------------HHHHcCCH-hHhcCCcc-cCCHHHHHHHHHHHHH
Confidence            55554                                         23445553 33445554 4999999999999999


Q ss_pred             HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      +.+|++|||||||+|||+.+++.+.+.|.+++++ +.|+|++||+++++..+ +|++++|++|++++.|
T Consensus       113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l~~g~i~~~~  180 (180)
T cd03214         113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILLKDGRIVAQG  180 (180)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999765 78999999999998777 6999999999997643

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=3.1e-45  Score=329.11  Aligned_cols=216  Identities=22%  Similarity=0.320  Sum_probs=169.5

Q ss_pred             CCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           74 SQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      ..++++++|++++|++. ++.+|+++||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...+...
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~   85 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF--YQPQGGQVLLDGKPISQYEHKY   85 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCcEEEECCCchHHcCHHH
Confidence            46789999999999742 24699999999999999999999999999999999998  6799999999998876544333


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL--SMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      + ...+++++|++.+++ .++.+++......    ..............+.+.++.+  ++. ...++.+. +|||||||
T Consensus        86 ~-~~~i~~~~q~~~l~~-~tv~~nl~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~-~LSgG~~q  157 (226)
T cd03248          86 L-HSKVSLVGQEPVLFA-RSLQDNIAYGLQS----CSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGS-QLSGGQKQ  157 (226)
T ss_pred             H-HhhEEEEecccHHHh-hhHHHHhccccCC----CCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCC-cCCHHHHH
Confidence            2 245889999987765 4777776432110    0000000000112245667777  564 34566665 49999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      ||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++. . ||++++|++|++
T Consensus       158 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~-~d~i~~l~~g~i  226 (226)
T cd03248         158 RVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVE-R-ADQILVLDGGRI  226 (226)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHH-h-CCEEEEecCCcC
Confidence            99999999999999999999999999999999999999865 589999999999985 4 699999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=7.8e-45  Score=331.32  Aligned_cols=210  Identities=22%  Similarity=0.289  Sum_probs=173.9

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL  158 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i  158 (325)
                      +++||++.      .+|+|+||+|++||+++|+|+||||||||+++|+|+  . |.+|+|.++|+++...+...++ ..+
T Consensus         2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl--~-~~~G~i~~~g~~i~~~~~~~~~-~~i   71 (248)
T PRK03695          2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL--L-PGSGSIQFAGQPLEAWSAAELA-RHR   71 (248)
T ss_pred             cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--C-CCCeEEEECCEecCcCCHHHHh-hhe
Confidence            57888874      279999999999999999999999999999999997  4 3589999999998766554433 247


Q ss_pred             EEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH
Q 020520          159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA  238 (325)
Q Consensus       159 ~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL  238 (325)
                      +|++|++.+++..++.+++.....     ..   ....+....+.++++.+++. +..++.+.. ||||||||++|||||
T Consensus        72 ~~v~q~~~~~~~~tv~~nl~~~~~-----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~al  141 (248)
T PRK03695         72 AYLSQQQTPPFAMPVFQYLTLHQP-----DK---TRTEAVASALNEVAEALGLD-DKLGRSVNQ-LSGGEWQRVRLAAVV  141 (248)
T ss_pred             EEecccCccCCCccHHHHHHhcCc-----cC---CCcHHHHHHHHHHHHHcCCH-hHhcCCccc-CCHHHHHHHHHHHHH
Confidence            899999877777888887654311     00   11122345677889999985 456677664 999999999999999


Q ss_pred             Hh-------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          239 VL-------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       239 ~~-------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +.       +|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+ ||++++|++|++++.|+.+
T Consensus       142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~-~d~i~~l~~G~i~~~g~~~  218 (248)
T PRK03695        142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRH-ADRVWLLKQGKLLASGRRD  218 (248)
T ss_pred             hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEECCHH
Confidence            97       6799999999999999999999999999976788999999999988887 6999999999999998764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=9.3e-45  Score=310.64  Aligned_cols=162  Identities=33%  Similarity=0.515  Sum_probs=142.2

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++|++++|++  +++|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+.....+..
T Consensus         1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~~~~~~   76 (163)
T cd03216           1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL--YKPDSGEILVDGKEVSFASPRDARRAG   76 (163)
T ss_pred             CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEECCcCCHHHHHhcC
Confidence            478999999964  5799999999999999999999999999999999998  679999999999987654432211223


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|                                                            |||||+||++||||
T Consensus        77 i~~~~q------------------------------------------------------------LS~G~~qrl~lara   96 (163)
T cd03216          77 IAMVYQ------------------------------------------------------------LSVGERQMVEIARA   96 (163)
T ss_pred             eEEEEe------------------------------------------------------------cCHHHHHHHHHHHH
Confidence            444433                                                            99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      |+.+|++|||||||++||+.+++.+.+.|+++.+++.|||++|||++.+..+ +|++++|++|++++
T Consensus        97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l~~g~i~~  162 (163)
T cd03216          97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVLRDGRVVG  162 (163)
T ss_pred             HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEe
Confidence            9999999999999999999999999999999976688999999999988877 69999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=3.9e-45  Score=363.62  Aligned_cols=210  Identities=22%  Similarity=0.298  Sum_probs=173.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|.++...+...++ .
T Consensus         3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~--~~p~~G~i~~~~~~~~~~~~~~~~-~   77 (490)
T PRK10938          3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE--LPLLSGERQSQFSHITRLSFEQLQ-K   77 (490)
T ss_pred             eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCceEEECCcccccCCHHHHH-H
Confidence            6999999999964  5699999999999999999999999999999999998  679999999999877554433322 2


Q ss_pred             cEEEeccCCcc--CC------CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          157 GLFMSFQSPVE--IP------GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       157 ~i~~~~Q~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      .+++++|++..  +.      .+++.+++..               ..+...++.++++.+++. +..++.+.+ |||||
T Consensus        78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~  140 (490)
T PRK10938         78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD---------------EVKDPARCEQLAQQFGIT-ALLDRRFKY-LSTGE  140 (490)
T ss_pred             HhceeccCcchhhcccchhhccccHHHhccc---------------chhHHHHHHHHHHHcCCH-hhhhCCccc-CCHHH
Confidence            47788998642  11      1222222110               011234567789999996 567777765 99999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      ||||+|||||+.+|++|||||||+|||+.+++++.++|++++++|.|||+||||++++..+ ||++++|++|+++..|++
T Consensus       141 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~-~d~v~~l~~G~i~~~~~~  219 (490)
T PRK10938        141 TRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDF-VQFAGVLADCTLAETGER  219 (490)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhh-CCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999977788999999999999887 699999999999998876


Q ss_pred             c
Q 020520          309 S  309 (325)
Q Consensus       309 ~  309 (325)
                      +
T Consensus       220 ~  220 (490)
T PRK10938        220 E  220 (490)
T ss_pred             H
Confidence            4

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.2e-45  Score=379.89  Aligned_cols=264  Identities=19%  Similarity=0.283  Sum_probs=207.9

Q ss_pred             hhhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCcc
Q 020520           40 SNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSG  117 (325)
Q Consensus        40 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsG  117 (325)
                      .++-++..++.++..+++..++........ ....-..-++++||+|+||.. +.++|+|+||+|++|+.+|||||||||
T Consensus       949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen  949 PDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCC
Confidence            456777777888888887766443332111 122234469999999999852 356999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHH
Q 020520          118 KSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE  197 (325)
Q Consensus       118 KSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (325)
                      |||.+.+|-.+  |.|++|.|.+||.++.+++.+..|+ .++.|.|+|.+|.. |..||+..+.         ..++.++
T Consensus      1029 KSTvI~LLeRf--Ydp~~G~V~IDg~dik~lnl~~LR~-~i~lVsQEP~LF~~-TIrENI~YG~---------~~vs~~e 1095 (1228)
T KOG0055|consen 1029 KSTVISLLERF--YDPDAGKVKIDGVDIKDLNLKWLRK-QIGLVSQEPVLFNG-TIRENIAYGS---------EEVSEEE 1095 (1228)
T ss_pred             HHHHHHHHHHh--cCCCCCeEEECCcccccCCHHHHHH-hcceeccCchhhcc-cHHHHHhccC---------CCCCHHH
Confidence            99999999998  8999999999999999999877654 47888999998864 7888876551         1122333


Q ss_pred             HH-----HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC
Q 020520          198 FY-----AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP  272 (325)
Q Consensus       198 ~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~  272 (325)
                      ..     +.+.+.+..+.-+.+..-...+.+||||||||+|||||+++||+||||||.||+||.++++.+.+.|.+.. .
T Consensus      1096 Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~ 1174 (1228)
T KOG0055|consen 1096 IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-E 1174 (1228)
T ss_pred             HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-c
Confidence            32     23445566665543333333345799999999999999999999999999999999999999999999975 5


Q ss_pred             CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCeec
Q 020520          273 KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA  321 (325)
Q Consensus       273 g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~~  321 (325)
                      |+|.|+|+|.+..+..  ||.|+|+++|+|++.|+.  .++++.+|.|+
T Consensus      1175 gRT~IvIAHRLSTIqn--aD~I~Vi~~G~VvE~GtH--~~L~~~~G~Y~ 1219 (1228)
T KOG0055|consen 1175 GRTTIVIAHRLSTIQN--ADVIAVLKNGKVVEQGTH--DELLAKRGIYF 1219 (1228)
T ss_pred             CCcEEEEecchhhhhc--CCEEEEEECCEEEecccH--HHHHhCCCchH
Confidence            7899999998888875  699999999999999965  57888888554

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=9.9e-45  Score=320.90  Aligned_cols=193  Identities=25%  Similarity=0.329  Sum_probs=159.5

Q ss_pred             cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCHH
Q 020520           77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~~  151 (325)
                      .+.++||+|.|+.+  ++.+|+++||+|++||+++|+||||||||||+++|+|+  ++   |++|+|.++|.++......
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~~~~G~i~i~g~~~~~~~~~   80 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR--TEGNVSVEGDIHYNGIPYKEFAEK   80 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc--CCCCCCcceEEEECCEECccchhh
Confidence            58899999999753  56799999999999999999999999999999999998  55   8999999999988654322


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                        .+..++|++|++.+++.+++.+++.....                       +.        .++.+. .|||||+||
T Consensus        81 --~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------------------~~--------~~~~~~-~LS~Ge~qr  126 (202)
T cd03233          81 --YPGEIIYVSEEDVHFPTLTVRETLDFALR-----------------------CK--------GNEFVR-GISGGERKR  126 (202)
T ss_pred             --hcceEEEEecccccCCCCcHHHHHhhhhh-----------------------hc--------cccchh-hCCHHHHHH
Confidence              23458899999988888888887643210                       00        223343 499999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEE-eCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMI-THYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIiv-tHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ++|||||+.+|++|||||||+|||+.+++.+++.|+++.++ +.|+|++ +|+.+.+... ||++++|++|++++.|
T Consensus       127 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~-~d~i~~l~~G~i~~~g  202 (202)
T cd03233         127 VSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDL-FDKVLVLYEGRQIYYG  202 (202)
T ss_pred             HHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHh-CCeEEEEECCEEEecC
Confidence            99999999999999999999999999999999999998765 5666655 5556777776 6999999999998654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=8.2e-45  Score=327.49  Aligned_cols=203  Identities=26%  Similarity=0.354  Sum_probs=165.0

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC----CccEEEECCEeCCCCCHHHHhhccEEEeccCCc--c
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV----TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPV--E  167 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p----~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~--~  167 (325)
                      +|+|+||+|++||+++|+||||||||||+++|+|+  ++|    ++|+|.++|+++...   ......+++++|++.  +
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~~~~~G~i~~~g~~~~~~---~~~~~~i~~~~q~~~~~~   75 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGL--LPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNPRTAF   75 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCccCccccEEEECCEechhh---hhhhheeEEEecCchhhc
Confidence            58999999999999999999999999999999998  567    899999999987543   222235889999985  4


Q ss_pred             CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCCCCCChHHHHHHHHHHHHHhCCCEE
Q 020520          168 IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVNEGFSGGERKRNEILQLAVLGADLA  245 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lL  245 (325)
                      ++.+++.+++......    .+..   ..+...++.++++.+++..  +..++.+.. |||||||||+|||||+.+|++|
T Consensus        76 ~~~~t~~~~~~~~~~~----~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-LS~G~~qrv~laral~~~p~vl  147 (230)
T TIGR02770        76 NPLFTMGNHAIETLRS----LGKL---SKQARALILEALEAVGLPDPEEVLKKYPFQ-LSGGMLQRVMIALALLLEPPFL  147 (230)
T ss_pred             CcccCHHHHHHHHHHH----cCcc---HHHHHHHHHHHHHHcCCCchHHHHhCChhh-cCHHHHHHHHHHHHHhcCCCEE
Confidence            4556777766433211    1111   1223355778899999852  345666654 9999999999999999999999


Q ss_pred             EEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          246 ILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       246 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||||+|||+.+++.+.+.|++++++ |+|||++|||++++..+ +|++++|++|++++.|+++.
T Consensus       148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~~~~~~  212 (230)
T TIGR02770       148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARI-ADEVAVMDDGRIVERGTVKE  212 (230)
T ss_pred             EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999998764 78999999999998877 69999999999999987653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-44  Score=336.07  Aligned_cols=229  Identities=23%  Similarity=0.294  Sum_probs=178.2

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC---CCCccEEEECCEeCCCCC-
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY---EVTEGSVVFKGENLLEME-  149 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~---~p~~G~I~~~g~~i~~~~-  149 (325)
                      ..++|+++||+++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+...   .|++|+|.++|.++.... 
T Consensus        42 ~~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~  119 (305)
T PRK14264         42 GDAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV  119 (305)
T ss_pred             CCceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            4568999999999964  5799999999999999999999999999999999998311   268999999999875422 


Q ss_pred             -HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc-C----CCCCC-hHHHHHhHHHHHHhcCCcc---cccccc
Q 020520          150 -PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL-G----QPEIG-PIEFYAYLYPKLERLSMKT---DFLNRN  219 (325)
Q Consensus       150 -~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~~~l~~~~l~~---~~~~~~  219 (325)
                       .... +..++|++|++.+++. ++.+++........... +    ..... .......+.++++.+++..   +..++.
T Consensus       120 ~~~~~-~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  197 (305)
T PRK14264        120 NLVEL-RKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN  197 (305)
T ss_pred             cHHHH-hhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence             2222 2358999999987774 88888765432110000 0    00000 1122345667788887731   234555


Q ss_pred             CCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEE-EEEe
Q 020520          220 VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI-HIME  298 (325)
Q Consensus       220 ~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i-~vl~  298 (325)
                      +. +|||||+|||+|||||+++|+||||||||+|||+.+++.+.++|++++++ .|||++|||++++..+ ||++ ++|+
T Consensus       198 ~~-~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~i~~~-~d~i~~~l~  274 (305)
T PRK14264        198 AL-GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARI-SDQTAVFLT  274 (305)
T ss_pred             cc-cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHHHHh-cCEEEEEec
Confidence            55 49999999999999999999999999999999999999999999999764 7999999999998887 6886 5679


Q ss_pred             CCEEEEEcCcc
Q 020520          299 DGRIIKTGDAS  309 (325)
Q Consensus       299 ~G~iv~~g~~~  309 (325)
                      +|++++.|+++
T Consensus       275 ~G~i~~~g~~~  285 (305)
T PRK14264        275 GGELVEYDDTD  285 (305)
T ss_pred             CCEEEEeCCHH
Confidence            99999999865

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=1.5e-44  Score=324.77  Aligned_cols=202  Identities=23%  Similarity=0.328  Sum_probs=165.4

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      +.++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++....        
T Consensus        23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~--------   90 (224)
T cd03220          23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI--YPPDSGTVTVRGRVSSLLG--------   90 (224)
T ss_pred             hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEchhhc--------
Confidence            788999999964  6799999999999999999999999999999999998  6799999999998753110        


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                           +...+++..++.+++......    .+   ....+....+.++++.+++. +..++.+.+ ||||||||++||||
T Consensus        91 -----~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~qrv~lara  156 (224)
T cd03220          91 -----LGGGFNPELTGRENIYLNGRL----LG---LSRKEIDEKIDEIIEFSELG-DFIDLPVKT-YSSGMKARLAFAIA  156 (224)
T ss_pred             -----ccccCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCh-hhhhCChhh-CCHHHHHHHHHHHH
Confidence                 111233456888877554221    11   11223334566778888885 556777764 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|+++++++.|||++|||++++..+ +|++++|++|++++.|
T Consensus       157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~G~i~~~g  224 (224)
T cd03220         157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRL-CDRALVLEKGKIRFDG  224 (224)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999876688999999999998877 6999999999998764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=1.6e-44  Score=362.40  Aligned_cols=240  Identities=24%  Similarity=0.280  Sum_probs=181.9

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCC-C-CCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCC
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSD-G-QDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEG  105 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~G  105 (325)
                      +..|+.++......++....+.+|+.++++.+++....... . ........++++||+|+|+++ +++|+|+||+|++|
T Consensus       283 ~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G  361 (529)
T TIGR02868       283 AFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPG  361 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCC
Confidence            45677788888889999999999999988655432111111 0 011123459999999999753 56999999999999


Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR  185 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      |++||+||||||||||+++|+|+  ++|++|+|.+||.++.++ ....+ ..+++++|+|.+|++ |..+|+..+     
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~i~g~~i~~~-~~~lr-~~i~~V~Q~~~lF~~-TI~eNI~~g-----  431 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGL--LDPLQGEVTLDGVSVSSL-QDELR-RRISVFAQDAHLFDT-TVRDNLRLG-----  431 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhH-HHHHH-hheEEEccCcccccc-cHHHHHhcc-----
Confidence            99999999999999999999998  889999999999999988 65554 358999999999876 788887553     


Q ss_pred             hhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020520          186 RKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR  260 (325)
Q Consensus       186 ~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~  260 (325)
                          .++.++++..+.     +.+.++.+..+.+..-..-+..||||||||++|||||+++|++||||||||+||+++++
T Consensus       432 ----~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~  507 (529)
T TIGR02868       432 ----RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTES  507 (529)
T ss_pred             ----CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence                222233332221     22233333222121111223469999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCcEEEEEeCCh
Q 020520          261 DVAKAVNGLLTPKNSLLMITHYR  283 (325)
Q Consensus       261 ~i~~~L~~l~~~g~tvIivtHd~  283 (325)
                      .+.+.|.++. +++|+|+|||++
T Consensus       508 ~I~~~l~~~~-~~~TvIiItHrl  529 (529)
T TIGR02868       508 ELLEDLLAAL-SGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHhc-CCCEEEEEecCC
Confidence            9999999874 468999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=3.9e-44  Score=394.39  Aligned_cols=268  Identities=19%  Similarity=0.255  Sum_probs=208.5

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCC-CCCCCCC--CCCCcEEEEEEEEEECCCcccceeeeEEEEeCC
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKS-SSDGQDE--KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEG  105 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~G  105 (325)
                      ..|+..+......+.....+.+|+.++.+.+++.... ....+..  +....|+++||+++|+++..++|+|+||+|++|
T Consensus      1233 ~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G 1312 (1522)
T TIGR00957      1233 TFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGG 1312 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCC
Confidence            4566667777788899999999999988655443211 1111111  223469999999999754457999999999999


Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR  185 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      |.+||+|+||||||||+++|.|+  ++|++|+|.+||.|+..++....+. .+++++|+|.+|.+ |..+|+...     
T Consensus      1313 ekiaIVGrTGsGKSTL~~lL~rl--~~~~~G~I~IdG~dI~~i~~~~LR~-~i~iVpQdp~LF~g-TIr~NLdp~----- 1383 (1522)
T TIGR00957      1313 EKVGIVGRTGAGKSSLTLGLFRI--NESAEGEIIIDGLNIAKIGLHDLRF-KITIIPQDPVLFSG-SLRMNLDPF----- 1383 (1522)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC--ccCCCCeEEECCEEccccCHHHHHh-cCeEECCCCcccCc-cHHHHcCcc-----
Confidence            99999999999999999999998  7899999999999999998877553 48899999999987 788886421     


Q ss_pred             hhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccC---CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020520          186 RKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNV---NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV  256 (325)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~  256 (325)
                         +  +.++++.+    ++++..++..      +-++..+   +.+||||||||++|||||+++|+|||||||||+||.
T Consensus      1384 ---~--~~sdeei~----~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~ 1454 (1522)
T TIGR00957      1384 ---S--QYSDEEVW----WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL 1454 (1522)
T ss_pred             ---c--CCCHHHHH----HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence               1  12233332    2333333210      1123222   346999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020520          257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY  319 (325)
Q Consensus       257 ~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~  319 (325)
                      ++.+.|.+.|++.. +++|||+|+|+++.+..  +|+|+||++|+|++.|+++  ++++++|.
T Consensus      1455 ~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~--~DrIlVld~G~IvE~G~~~--eLl~~~~~ 1512 (1522)
T TIGR00957      1455 ETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMD--YTRVIVLDKGEVAEFGAPS--NLLQQRGI 1512 (1522)
T ss_pred             HHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh--CCEEEEEECCEEEEECCHH--HHHhCCCH
Confidence            99999999999875 46899999999988875  6999999999999999875  55666663

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=1e-44  Score=331.13  Aligned_cols=200  Identities=22%  Similarity=0.354  Sum_probs=166.3

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++||+++|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|.            
T Consensus         3 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~~~------------   66 (251)
T PRK09544          3 SLVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL--VAPDEGVIKRNGK------------   66 (251)
T ss_pred             cEEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCc------------
Confidence            48999999999964  5799999999999999999999999999999999998  6799999999862            


Q ss_pred             ccEEEeccCCccCCCc--chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      ..++|++|++.+++.+  ++.+++...          ....    ...+.++++.+++. +..++.+.. |||||||||+
T Consensus        67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~----------~~~~----~~~~~~~l~~~gl~-~~~~~~~~~-LSgGq~qrv~  130 (251)
T PRK09544         67 LRIGYVPQKLYLDTTLPLTVNRFLRLR----------PGTK----KEDILPALKRVQAG-HLIDAPMQK-LSGGETQRVL  130 (251)
T ss_pred             cCEEEeccccccccccChhHHHHHhcc----------cccc----HHHHHHHHHHcCCh-HHHhCChhh-CCHHHHHHHH
Confidence            2488999998766543  333332110          0111    13356678889985 556677664 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |.|||++|||++++..+ ||++++|+ |++++.|+++
T Consensus       131 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~-~d~i~~l~-~~i~~~g~~~  205 (251)
T PRK09544        131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK-TDEVLCLN-HHICCSGTPE  205 (251)
T ss_pred             HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEC-CceEeeCCHH
Confidence            999999999999999999999999999999999998765 78999999999999887 69999996 5788888764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.1e-44  Score=362.87  Aligned_cols=220  Identities=24%  Similarity=0.358  Sum_probs=177.9

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC----------------
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK----------------  141 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~----------------  141 (325)
                      |+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+..++|++|+|.++                
T Consensus         1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~   78 (520)
T TIGR03269         1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV   78 (520)
T ss_pred             CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence            578999999963  57999999999999999999999999999999999973126899999997                


Q ss_pred             -------CEeCC-------CCCHH--HHhhccEEEeccC-CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHH
Q 020520          142 -------GENLL-------EMEPE--ERSLAGLFMSFQS-PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYP  204 (325)
Q Consensus       142 -------g~~i~-------~~~~~--~~~~~~i~~~~Q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (325)
                             |.++.       .....  ...+..++++||+ +.+++.+++.+++......    .+.   ...+...++.+
T Consensus        79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----~~~---~~~~~~~~~~~  151 (520)
T TIGR03269        79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----IGY---EGKEAVGRAVD  151 (520)
T ss_pred             ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH----cCC---CHHHHHHHHHH
Confidence                   22221       11111  1112358899997 5677778888887654321    111   12334456788


Q ss_pred             HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCCh
Q 020520          205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYR  283 (325)
Q Consensus       205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~  283 (325)
                      +++.+++. +..++.+.+ |||||||||+|||||+.+|++|||||||++||+.++++++++|+++.+ .|.|||+||||+
T Consensus       152 ~l~~~gl~-~~~~~~~~~-LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~  229 (520)
T TIGR03269       152 LIEMVQLS-HRITHIARD-LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP  229 (520)
T ss_pred             HHHHcCCh-hhhhcCccc-CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            89999995 566777764 999999999999999999999999999999999999999999999965 488999999999


Q ss_pred             hHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          284 RLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       284 ~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +++..+ ||++++|++|+++..|+++
T Consensus       230 ~~~~~~-~d~i~~l~~G~i~~~g~~~  254 (520)
T TIGR03269       230 EVIEDL-SDKAIWLENGEIKEEGTPD  254 (520)
T ss_pred             HHHHHh-cCEEEEEeCCEEeeecCHH
Confidence            999887 6999999999999888764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-44  Score=329.05  Aligned_cols=221  Identities=18%  Similarity=0.216  Sum_probs=177.6

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCCC
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLEM  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~~  148 (325)
                      ..+.+.+++++++|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|     ++|+|.++|+++...
T Consensus         5 ~~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~~~~~~G~i~~~g~~i~~~   80 (261)
T PRK14263          5 APIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM--NDLVKGFRFEGHVHFLGQDVYGK   80 (261)
T ss_pred             CCceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--cccccCCCCceEEEECCEecccc
Confidence            3567999999999964  6799999999999999999999999999999999998  444     799999999987542


Q ss_pred             CHH-HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc---cccccCCCCC
Q 020520          149 EPE-ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD---FLNRNVNEGF  224 (325)
Q Consensus       149 ~~~-~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~L  224 (325)
                      +.. ...+..+++++|++.++ ..++.+++.......    ..    ..+....+.++++.+++...   ..++.+. +|
T Consensus        81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~----~~----~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-~L  150 (261)
T PRK14263         81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN----RY----KGDLGDRVKHALQGAALWDEVKDKLKVSGL-SL  150 (261)
T ss_pred             ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhc----Cc----hHHHHHHHHHHHHHcCCchhhhhhhhCCcc-cC
Confidence            211 12234589999999877 488888876543211    10    11223456777888887421   2234444 59


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe------
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME------  298 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~------  298 (325)
                      ||||+||++|||||+.+|++|||||||+|||+.+++++.++|+++.+ +.|||++|||++++..+ ||++++|+      
T Consensus       151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~-~d~v~~l~~~~~~~  228 (261)
T PRK14263        151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRV-ADTTAFFSVDISQG  228 (261)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHh-CCEEEEEecccccc
Confidence            99999999999999999999999999999999999999999999854 68999999999998887 69999996      


Q ss_pred             --CCEEEEEcCccH
Q 020520          299 --DGRIIKTGDASI  310 (325)
Q Consensus       299 --~G~iv~~g~~~~  310 (325)
                        +|++++.|+.+.
T Consensus       229 ~~~G~i~~~g~~~~  242 (261)
T PRK14263        229 TRTGYLVEMGPTAQ  242 (261)
T ss_pred             cCCceEEEeCCHHH
Confidence              899999997653

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=3.5e-44  Score=359.82  Aligned_cols=251  Identities=25%  Similarity=0.302  Sum_probs=190.4

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH  108 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~  108 (325)
                      ..|+..+......++....+.+|+.++++.+++.. ..... .......++++||+|+|++..+++|+|+||+|++||++
T Consensus       274 ~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~~~~~-~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~  351 (529)
T TIGR02857       274 YLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-GKAPV-TAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERV  351 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcCC-CCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEE
Confidence            45666666778888899999999998876332111 11111 11122469999999999754457999999999999999


Q ss_pred             EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020520          109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL  188 (325)
Q Consensus       109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~  188 (325)
                      +|+||||||||||+|+|+|+  ++|++|+|.++|.++...+....++ .+++++|++.+|++ |..+|+..+.       
T Consensus       352 ~ivG~sGsGKSTL~~ll~g~--~~~~~G~I~~~g~~i~~~~~~~lr~-~i~~v~Q~~~lf~~-ti~~Ni~~~~-------  420 (529)
T TIGR02857       352 ALVGPSGAGKSTLLNLLLGF--VDPTEGSIAVNGVPLADADADSWRD-QIAWVPQHPFLFAG-TIAENIRLAR-------  420 (529)
T ss_pred             EEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEehhhCCHHHHHh-heEEEcCCCcccCc-CHHHHHhccC-------
Confidence            99999999999999999998  8899999999999999888766543 58999999998875 8888875431       


Q ss_pred             CCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020520          189 GQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA  263 (325)
Q Consensus       189 ~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~  263 (325)
                        +..++++..+     .+.+.++.++.+.+..-...+..||||||||++|||||+++|++||||||||+||+.+++.+.
T Consensus       421 --~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~  498 (529)
T TIGR02857       421 --PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVT  498 (529)
T ss_pred             --CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence              1122222211     122334444322122222233469999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      +.|.++. +++|+|+|||+++.+..  +|+|++|
T Consensus       499 ~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l  529 (529)
T TIGR02857       499 EALRALA-QGRTVLLVTHRLALAER--ADRIVVL  529 (529)
T ss_pred             HHHHHhc-CCCEEEEEecCHHHHHh--CCEEEeC
Confidence            9999985 46899999999988754  6999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-45  Score=303.95  Aligned_cols=221  Identities=24%  Similarity=0.320  Sum_probs=188.2

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC--CCCH-HH-
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL--EMEP-EE-  152 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~--~~~~-~~-  152 (325)
                      .|+++|+++.|+.  ..+|.||+|+.++||.+.++||||+|||||+|.|.-+  ..|.+|+..+.|....  ..+. +. 
T Consensus         2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnll--e~p~sg~l~ia~~~fd~s~~~~~k~i   77 (242)
T COG4161           2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL--EMPRSGTLNIAGNHFDFSKTPSDKAI   77 (242)
T ss_pred             ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH--hCCCCCeEEecccccccccCccHHHH
Confidence            3789999999974  5799999999999999999999999999999999887  5689999999886543  2221 11 


Q ss_pred             -HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       153 -~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                       .-+..++++||...++|.+++.+|+-....   +..+   ..+.+...++.++++++.+. ++.|+.+-+ |||||+||
T Consensus        78 ~~lr~~vgmvfqqy~lwphltv~enlieap~---kv~g---l~~~qa~~~a~ellkrlrl~-~~adr~plh-lsggqqqr  149 (242)
T COG4161          78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPC---RVLG---LSKDQALARAEKLLKRLRLK-PYADRYPLH-LSGGQQQR  149 (242)
T ss_pred             HHHHHhhhhhhhhhccCchhHHHHHHHhhhH---HHhC---CCHHHHHHHHHHHHHHhccc-cccccCcee-cccchhhh
Confidence             123458999999999999999988644321   1122   23456677788899999996 688999876 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |+|||||+.+|++|++||||++|||+-..++.++|+++...|.|-++|||..+.+... +.+++.|++|+|++.|+.++
T Consensus       150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~-as~vvyme~g~ive~g~a~~  227 (242)
T COG4161         150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKT-ASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhh-hhheEeeecCeeEeecchhh
Confidence            9999999999999999999999999999999999999998899999999999999987 68999999999999998764

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.6e-44  Score=319.27  Aligned_cols=198  Identities=24%  Similarity=0.293  Sum_probs=165.7

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++||++.|++  +.+|+++||+|++||++||+|+||||||||+++|+|+  ++|++|+|.++|.++......  .+.+
T Consensus         1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~--~~~~   74 (201)
T cd03231           1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL--SPPLAGRVLLNGGPLDFQRDS--IARG   74 (201)
T ss_pred             CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccccHH--hhhh
Confidence            478999999964  5799999999999999999999999999999999998  689999999999987543322  2245


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +++++|++.+++..++.+++.....       .  .    ..+++.++++.+++. +..++.+. .||||||||++||||
T Consensus        75 i~~~~q~~~~~~~~tv~e~l~~~~~-------~--~----~~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~lara  139 (201)
T cd03231          75 LLYLGHAPGIKTTLSVLENLRFWHA-------D--H----SDEQVEEALARVGLN-GFEDRPVA-QLSAGQQRRVALARL  139 (201)
T ss_pred             eEEeccccccCCCcCHHHHHHhhcc-------c--c----cHHHHHHHHHHcCCh-hhhcCchh-hCCHHHHHHHHHHHH
Confidence            8899999888888888888754311       0  0    123466778889985 45566665 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|+++.++|.|+|++|||....... +++++++
T Consensus       140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~-~~~~~~~  198 (201)
T cd03231         140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEA-GARELDL  198 (201)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhc-cceeEec
Confidence            9999999999999999999999999999999877788999999998877775 6888765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=3.3e-44  Score=328.80  Aligned_cols=217  Identities=18%  Similarity=0.276  Sum_probs=171.4

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ....|+++|++++|++..+.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+....
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~i~g~~i~~~~~~~~   93 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM--VDIFDGKIVIDGIDISKLPLHTL   93 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--cCCCCCeEEECCEEhhhCCHHHH
Confidence            4568999999999975335799999999999999999999999999999999998  67999999999999876654433


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhc--CCccccccccCCCCCCh
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERL--SMKTDFLNRNVNEGFSG  226 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSg  226 (325)
                      + ..++|++|++.+++. ++.+++....          ........     ..+.+.++.+  ++. ...+.... .|||
T Consensus        94 ~-~~i~~v~q~~~l~~~-tv~~nl~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~-~~~~~~~~-~LS~  159 (257)
T cd03288          94 R-SRLSIILQDPILFSG-SIRFNLDPEC----------KCTDDRLWEALEIAQLKNMVKSLPGGLD-AVVTEGGE-NFSV  159 (257)
T ss_pred             h-hhEEEECCCCccccc-HHHHhcCcCC----------CCCHHHHHHHHHHhCcHHHHhhcccccC-cEeccCCC-cCCH
Confidence            2 358899999977763 6655542110          00011111     1233344444  443 22344444 5999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++. ++.|||++||+++.+..  ||++++|++|++++.|
T Consensus       160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~--~dri~~l~~G~i~~~g  236 (257)
T cd03288         160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD--ADLVLVLSRGILVECD  236 (257)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh--CCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999875 47899999999998874  6999999999999998


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       237 ~~~  239 (257)
T cd03288         237 TPE  239 (257)
T ss_pred             CHH
Confidence            765

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3.4e-44  Score=357.81  Aligned_cols=222  Identities=19%  Similarity=0.285  Sum_probs=181.8

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++|+++       .+|+++||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...+.....
T Consensus       255 ~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~--~~p~~G~I~~~g~~i~~~~~~~~~  325 (501)
T PRK10762        255 EVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA--LPRTSGYVTLDGHEVVTRSPQDGL  325 (501)
T ss_pred             CcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHHHH
Confidence            45899999984       379999999999999999999999999999999998  678999999999998765543333


Q ss_pred             hccEEEeccCC---ccCCCcchHHHHHHHHHHHhhh-cCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          155 LAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRK-LGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       155 ~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      +.+++|++|++   .+++.+++.+++.......... .+.  ....+....+.++++.+++..+..++.+.+ |||||||
T Consensus       326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGekq  402 (501)
T PRK10762        326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGS--LKHADEQQAVSDFIRLFNIKTPSMEQAIGL-LSGGNQQ  402 (501)
T ss_pred             HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccc--cCHHHHHHHHHHHHHhcCCCCCCccCchhh-CCHHHHH
Confidence            34689999996   4677788888876532110000 000  112223345778899999943456777765 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+|||||+.+|++|||||||+|||+.+++.+.++|+++.++|.|||++|||++++..+ ||++++|++|+++..|+++
T Consensus       403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~i~~~~~~~  480 (501)
T PRK10762        403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGM-SDRILVMHEGRISGEFTRE  480 (501)
T ss_pred             HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh-CCEEEEEECCEEEEEeccc
Confidence            99999999999999999999999999999999999999987789999999999999887 6999999999999888765

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=1e-43  Score=357.80  Aligned_cols=254  Identities=21%  Similarity=0.236  Sum_probs=192.7

Q ss_pred             hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020520           30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA  109 (325)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~  109 (325)
                      .|+..+......++....+.+|+.++...+.++...  ..........++++||+|+|++ ++++|+|+||+|++||+++
T Consensus       277 ~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~a  353 (547)
T PRK10522        277 TPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP--RPQAFPDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLF  353 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--cccccCcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEE
Confidence            466677777778888888899988875432221111  1111111236999999999974 3569999999999999999


Q ss_pred             EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020520          110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG  189 (325)
Q Consensus       110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (325)
                      |+||||||||||+++|+|+  ++|++|+|.++|+++...+....+ ..+++++|++.+|++ +..++            +
T Consensus       354 ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~lf~~-ti~~n------------~  417 (547)
T PRK10522        354 LIGGNGSGKSTLAMLLTGL--YQPQSGEILLDGKPVTAEQPEDYR-KLFSAVFTDFHLFDQ-LLGPE------------G  417 (547)
T ss_pred             EECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEECCCCCHHHHh-hheEEEecChhHHHH-hhccc------------c
Confidence            9999999999999999998  789999999999999887766544 358899999987654 21111            0


Q ss_pred             CCCCChHHHHHhHHHHHHhcCCccccc--ccc-CCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 020520          190 QPEIGPIEFYAYLYPKLERLSMKTDFL--NRN-VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV  266 (325)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~-~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L  266 (325)
                       ...    ..+.+.+.++.+++.....  +.. -+.+||||||||++|||||+++|++|||||||++||+++++.+.+.|
T Consensus       418 -~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l  492 (547)
T PRK10522        418 -KPA----NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL  492 (547)
T ss_pred             -Cch----HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence             011    1123556677777753221  111 13469999999999999999999999999999999999999999998


Q ss_pred             Hhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          267 NGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       267 ~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      .+.. +.++|+|+|||+++.+..  +|+|++|++|++++....+
T Consensus       493 ~~~~~~~~~tvi~itH~~~~~~~--~d~i~~l~~G~i~e~~~~~  534 (547)
T PRK10522        493 LPLLQEMGKTIFAISHDDHYFIH--ADRLLEMRNGQLSELTGEE  534 (547)
T ss_pred             HHHHHhCCCEEEEEEechHHHHh--CCEEEEEECCEEEEecCCc
Confidence            7654 347899999999987653  6999999999999875433

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=8e-44  Score=391.47  Aligned_cols=230  Identities=20%  Similarity=0.242  Sum_probs=193.8

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ..+|+++||+++|++..+.+|+|+||+|++||++||+||||||||||+|+|+|+  .+|++|+|.++|+++... ... .
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl--l~ptsG~I~i~G~~i~~~-~~~-~ 2010 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD--TTVTSGDATVAGKSILTN-ISD-V 2010 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCEECcch-HHH-H
Confidence            458999999999974336799999999999999999999999999999999998  679999999999998542 222 2


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..+++++|++.+++.+|+.+++......    .+.   ..++....+.++++.+++. +..++.+.+ |||||||||+|
T Consensus      2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l----~g~---~~~~~~~~v~~lLe~lgL~-~~~dk~~~~-LSGGqKqRLsl 2081 (2272)
T TIGR01257      2011 HQNMGYCPQFDAIDDLLTGREHLYLYARL----RGV---PAEEIEKVANWSIQSLGLS-LYADRLAGT-YSGGNKRKLST 2081 (2272)
T ss_pred             hhhEEEEeccccCCCCCCHHHHHHHHHHh----cCC---CHHHHHHHHHHHHHHcCCH-HHhcCChhh-CCHHHHHHHHH
Confidence            34589999999999999999988764322    111   1233345567789999996 567888775 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVL  314 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~  314 (325)
                      |+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||++++++.+ |||+++|++|++++.|++++.+..
T Consensus      2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~l-cDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257      2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEAL-CTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred             HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHHHHHHH
Confidence            9999999999999999999999999999999999977789999999999999988 699999999999999998765433


Q ss_pred             HhCC
Q 020520          315 EEGG  318 (325)
Q Consensus       315 ~~~~  318 (325)
                      ...|
T Consensus      2161 ~g~g 2164 (2272)
T TIGR01257      2161 FGDG 2164 (2272)
T ss_pred             hCCc
Confidence            3333

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-44  Score=357.36  Aligned_cols=224  Identities=21%  Similarity=0.272  Sum_probs=181.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .+.++++|+++      +.+++|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++.........
T Consensus       255 ~~~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~  326 (501)
T PRK11288        255 EVRLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA--TRRTAGQVYLDGKPIDIRSPRDAI  326 (501)
T ss_pred             CcEEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC--CcCCCceEEECCEECCCCCHHHHH
Confidence            34799999983      2489999999999999999999999999999999998  678999999999988654443333


Q ss_pred             hccEEEeccCCc---cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          155 LAGLFMSFQSPV---EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       155 ~~~i~~~~Q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                      +.+++|++|++.   +++..++.+++...........+.. .........+.++++.+++..+..++++.. ||||||||
T Consensus       327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~qr  404 (501)
T PRK11288        327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCL-INNRWEAENADRFIRSLNIKTPSREQLIMN-LSGGNQQK  404 (501)
T ss_pred             hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccc-cChHHHHHHHHHHHHhcCcccCCccCcccc-CCHHHHHH
Confidence            456889999973   7777888888754321110000000 011222345678899999853457777775 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+|||||+.+|++|||||||+|||+.+++.++++|.+++++|.|||+||||++++..+ ||++++|++|++++.|+.+
T Consensus       405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~-~d~i~~l~~g~i~~~~~~~  481 (501)
T PRK11288        405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGV-ADRIVVMREGRIAGELARE  481 (501)
T ss_pred             HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhh-CCEEEEEECCEEEEEEccc
Confidence            9999999999999999999999999999999999999987789999999999999987 6999999999999998765

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.3e-43  Score=357.48  Aligned_cols=255  Identities=18%  Similarity=0.208  Sum_probs=193.2

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCC---CCCC-----CCCCCCCcEEEEEEEEEECCC---ccccee
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKS---SSDG-----QDEKSQPLLQVTGLTAVIAES---KQEILK   96 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~-----~~~~~~~~l~~~~ls~~y~~~---~~~iL~   96 (325)
                      +..|+..+......++.+..+.+|+.++++.++.+...   ....     ........++++||+|+|++.   .+++|+
T Consensus       280 l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~  359 (555)
T TIGR01194       280 IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALG  359 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceec
Confidence            45678888888889999999999999987533222111   0000     000123469999999999742   235999


Q ss_pred             eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHH
Q 020520           97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDF  176 (325)
Q Consensus        97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~  176 (325)
                      |+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+....+. .+++++|++.+|.+. ..++
T Consensus       360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~lf~~t-i~~n  435 (555)
T TIGR01194       360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--YIPQEGEILLDGAAVSADSRDDYRD-LFSAIFADFHLFDDL-IGPD  435 (555)
T ss_pred             cceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHHHh-hCcEEccChhhhhhh-hhcc
Confidence            99999999999999999999999999999998  7899999999999998887665443 478899999877542 2222


Q ss_pred             HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC-----CCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020520          177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV-----NEGFSGGERKRNEILQLAVLGADLAILDEID  251 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt  251 (325)
                      .            .+..    ..+.+.++++.+++.. +..+.+     ...||||||||++||||++.+|++|||||||
T Consensus       436 ~------------~~~~----~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~t  498 (555)
T TIGR01194       436 E------------GEHA----SLDNAQQYLQRLEIAD-KVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA  498 (555)
T ss_pred             c------------ccch----hHHHHHHHHHHcCCch-hhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            1            0111    1233556677777752 222111     1359999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHH-hccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          252 SGLDVDALRDVAKAVN-GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       252 sgLD~~~~~~i~~~L~-~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      ++||+++++.+.+.+. .+..+++|+|+|||+++.+. . +|+|++|++|++++.
T Consensus       499 s~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~-~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-L-ADQIIKLAAGCIVKD  551 (555)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-h-CCEEEEEECCEEEEe
Confidence            9999999999988654 45455789999999998765 3 799999999999865

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.7e-44  Score=317.65  Aligned_cols=198  Identities=21%  Similarity=0.274  Sum_probs=163.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||++.|++  +.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++..  ..  .+.
T Consensus         2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~--~~--~~~   73 (207)
T PRK13539          2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--LPPAAGTIKLDGGDIDD--PD--VAE   73 (207)
T ss_pred             EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEeCcc--hh--hHh
Confidence            6899999999964  5799999999999999999999999999999999998  67899999999988642  11  223


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|++.+++..++.+++......    .+.   .    ...+.++++.+++. +..++.+. .||||||||++|||
T Consensus        74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~----~~~---~----~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~qrl~la~  140 (207)
T PRK13539         74 ACHYLGHRNAMKPALTVAENLEFWAAF----LGG---E----ELDIAAALEAVGLA-PLAHLPFG-YLSAGQKRRVALAR  140 (207)
T ss_pred             hcEEecCCCcCCCCCcHHHHHHHHHHh----cCC---c----HHHHHHHHHHcCCH-HHHcCChh-hcCHHHHHHHHHHH
Confidence            467888888777778888887543211    111   1    12366788999996 45566665 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++..   |+++.++
T Consensus       141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~  199 (207)
T PRK13539        141 LLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLG  199 (207)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeec
Confidence            9999999999999999999999999999999987678999999999988764   6776663

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=5.3e-44  Score=315.05  Aligned_cols=197  Identities=24%  Similarity=0.314  Sum_probs=161.8

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|+++.|++  +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...... . ...
T Consensus         1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~-~-~~~   74 (198)
T TIGR01189         1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL--LRPDSGEVRWNGTALAEQRDE-P-HRN   74 (198)
T ss_pred             CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEEcccchHH-h-hhh
Confidence            578999999964  6799999999999999999999999999999999998  689999999999988654322 2 235


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.+++..++.+++......    ..     ..  ...+.++++.+++. +..++.+.. ||||||||++||||
T Consensus        75 i~~~~q~~~~~~~~tv~~~l~~~~~~----~~-----~~--~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~la~a  141 (198)
T TIGR01189        75 ILYLGHLPGLKPELSALENLHFWAAI----HG-----GA--QRTIEDALAAVGLT-GFEDLPAAQ-LSAGQQRRLALARL  141 (198)
T ss_pred             eEEeccCcccccCCcHHHHHHHHHHH----cC-----Cc--HHHHHHHHHHcCCH-HHhcCChhh-cCHHHHHHHHHHHH
Confidence            78899998888888988887653211    11     01  13456778889986 456777764 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI  296 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~v  296 (325)
                      |+.+|++|||||||+|||+.+++.+.+.|.+++++|.|||++||+...+  . +++++.
T Consensus       142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~-~~~~~~  197 (198)
T TIGR01189       142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--V-EARELR  197 (198)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--c-ceEEee
Confidence            9999999999999999999999999999999876788999999987433  2 466543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.6e-44  Score=315.99  Aligned_cols=192  Identities=19%  Similarity=0.229  Sum_probs=161.1

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++|++++|++  +++|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++... .... +.
T Consensus         1 ml~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~v~~~g~~~~~~-~~~~-~~   74 (200)
T PRK13540          1 MLDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL--LNPEKGEILFERQSIKKD-LCTY-QK   74 (200)
T ss_pred             CEEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeeEEECCCccccC-HHHH-Hh
Confidence            5899999999964  5799999999999999999999999999999999998  679999999999987542 2222 23


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|++|++.+++..++.+++......     . .   .   ...+.++++.+++. +..++.+. .|||||+||++|||
T Consensus        75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~-----~-~---~---~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~~rv~lar  140 (200)
T PRK13540         75 QLCFVGHRSGINPYLTLRENCLYDIHF-----S-P---G---AVGITELCRLFSLE-HLIDYPCG-LLSSGQKRQVALLR  140 (200)
T ss_pred             heEEeccccccCcCCCHHHHHHHHHhc-----C-c---c---hHHHHHHHHHcCCc-hhhhCChh-hcCHHHHHHHHHHH
Confidence            588999998888888998887643210     0 0   0   12466788888885 45566665 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF  288 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~  288 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++||+..++..
T Consensus       141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  192 (200)
T PRK13540        141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK  192 (200)
T ss_pred             HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence            9999999999999999999999999999999987668899999999988866

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=8.8e-44  Score=339.76  Aligned_cols=263  Identities=25%  Similarity=0.282  Sum_probs=216.6

Q ss_pred             hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020520           30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA  109 (325)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~  109 (325)
                      -|+-.....|..|-.++.+.+|+...+...+....   .-+.+.+...|.++++++.=++..+++++++||++.+||.+|
T Consensus       290 aPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lg  366 (580)
T COG4618         290 APIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALG  366 (580)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEE
Confidence            45556666777888899999999998875544322   122334566899999999777777899999999999999999


Q ss_pred             EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020520          110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG  189 (325)
Q Consensus       110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (325)
                      ||||||||||||.|+|.|.  ++|.+|.|++||-++..++.+..-+ +|+|.||+-.+|++ |+.+|+...-        
T Consensus       367 IIGPSgSGKSTLaR~lvG~--w~p~~G~VRLDga~l~qWd~e~lG~-hiGYLPQdVeLF~G-TIaeNIaRf~--------  434 (580)
T COG4618         367 IIGPSGSGKSTLARLLVGI--WPPTSGSVRLDGADLRQWDREQLGR-HIGYLPQDVELFDG-TIAENIARFG--------  434 (580)
T ss_pred             EECCCCccHHHHHHHHHcc--cccCCCcEEecchhhhcCCHHHhcc-ccCcCcccceecCC-cHHHHHHhcc--------
Confidence            9999999999999999998  8899999999999999998876554 58999999999987 6777764431        


Q ss_pred             CCCCChHH-----HHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH
Q 020520          190 QPEIGPIE-----FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK  264 (325)
Q Consensus       190 ~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~  264 (325)
                       .+.+.+.     ..+.+++.+-++..+++..-..-+..||||||||++|||||..+|.+++||||-|+||.+.++.+.+
T Consensus       435 -~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~  513 (580)
T COG4618         435 -EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA  513 (580)
T ss_pred             -ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH
Confidence             1112222     2244677777887765555455556799999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          265 AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       265 ~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      .|.+.+++|.|+|+|||.+..+..  +|+|++|++|++...|+.++
T Consensus       514 Ai~~~k~rG~~vvviaHRPs~L~~--~Dkilvl~~G~~~~FG~r~e  557 (580)
T COG4618         514 AILAAKARGGTVVVIAHRPSALAS--VDKILVLQDGRIAAFGPREE  557 (580)
T ss_pred             HHHHHHHcCCEEEEEecCHHHHhh--cceeeeecCChHHhcCCHHH
Confidence            999999899999999999988765  59999999999999998764

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=7.7e-44  Score=307.13  Aligned_cols=171  Identities=27%  Similarity=0.422  Sum_probs=145.6

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++....+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+...++ ..
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~-~~   77 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDPTSGEILIDGVDLRDLDLESLR-KN   77 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEECCEEhhhcCHHHHH-hh
Confidence            478999999975223699999999999999999999999999999999998  678999999999988665544332 35


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++++||++.+++ .++.++                             +                 |||||||||+||||
T Consensus        78 i~~~~~~~~~~~-~t~~e~-----------------------------l-----------------LS~G~~~rl~la~a  110 (171)
T cd03228          78 IAYVPQDPFLFS-GTIREN-----------------------------I-----------------LSGGQRQRIAIARA  110 (171)
T ss_pred             EEEEcCCchhcc-chHHHH-----------------------------h-----------------hCHHHHHHHHHHHH
Confidence            788899875433 122111                             0                 89999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      |+.+|++|||||||+|||+.+++.+.++|+++.+ ++|||++|||++++..  ||++++|++|+
T Consensus       111 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~~~~l~~g~  171 (171)
T cd03228         111 LLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRD--ADRIIVLDDGR  171 (171)
T ss_pred             HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHh--CCEEEEEcCCC
Confidence            9999999999999999999999999999999864 6899999999999864  69999999884

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=7.1e-44  Score=356.11  Aligned_cols=221  Identities=21%  Similarity=0.293  Sum_probs=180.5

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++|+++       .+|+++||+|++||++||+||||||||||+|+|+|+  .+|++|+|.++|+++...+....
T Consensus       265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~  335 (510)
T PRK15439        265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL--RPARGGRIMLNGKEINALSTAQR  335 (510)
T ss_pred             CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCcEEEECCEECCCCCHHHH
Confidence            345899999983       269999999999999999999999999999999998  67899999999999876655443


Q ss_pred             hhccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          154 SLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       154 ~~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      .+.+++|++|++   .+++.+++.+++........ ....   ........+.++++.+++..+..++++.+ |||||||
T Consensus       336 ~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgG~kq  410 (510)
T PRK15439        336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR-GFWI---KPARENAVLERYRRALNIKFNHAEQAART-LSGGNQQ  410 (510)
T ss_pred             HhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhh-cccc---ChHHHHHHHHHHHHHcCCCCCCccCcccc-CCcHHHH
Confidence            345689999985   36777788777643211000 0000   11122345678899999953456777765 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+|||||+.+|+||||||||+|||+.+++.+.++|++++++|.|||+||||++++..+ ||++++|++|+++..|+++
T Consensus       411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~-~d~i~~l~~G~i~~~~~~~  488 (510)
T PRK15439        411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQM-ADRVLVMHQGEISGALTGA  488 (510)
T ss_pred             HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEEccc
Confidence            99999999999999999999999999999999999999987789999999999999987 6999999999999988765

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-44  Score=355.07  Aligned_cols=225  Identities=18%  Similarity=0.255  Sum_probs=179.2

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++|+++.|    +.+|+++||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...+.....
T Consensus       248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~  321 (491)
T PRK10982        248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI--REKSAGTITLHGKKINNHNANEAI  321 (491)
T ss_pred             CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC--CcCCccEEEECCEECCCCCHHHHH
Confidence            4589999999874    3599999999999999999999999999999999998  678999999999998766554443


Q ss_pred             hccEEEeccCCc---cCCCcchHHHHHHHH-HHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          155 LAGLFMSFQSPV---EIPGVNNIDFLHMAY-NARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       155 ~~~i~~~~Q~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      +.+++|++|++.   +++.++..++..... .......+.  .........+.+.++.+++..+..++.+.+ |||||||
T Consensus       322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~q  398 (491)
T PRK10982        322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL--LDNSRMKSDTQWVIDSMRVKTPGHRTQIGS-LSGGNQQ  398 (491)
T ss_pred             HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccc--cCcHHHHHHHHHHHHhcCccCCCccccccc-CCcHHHH
Confidence            456889999853   566666554421110 000000010  011223345677888888853456777765 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+|||||+.+|+||||||||+|||+.+++.++++|+++.++|.|||++|||++++..+ ||++++|++|+++..++..
T Consensus       399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~-~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGI-TDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhh-CCEEEEEECCEEEEEEccc
Confidence            99999999999999999999999999999999999999987789999999999999887 7999999999999777553

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.2e-43  Score=388.07  Aligned_cols=230  Identities=21%  Similarity=0.275  Sum_probs=192.9

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .+.|+++||++.|+++++.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++... ... .
T Consensus       926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL--l~PtsG~I~i~G~dI~~~-~~~-~ 1001 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL--LPPTSGTVLVGGKDIETN-LDA-V 1001 (2272)
T ss_pred             CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC--CCCCceEEEECCEECcch-HHH-H
Confidence            458999999999964346799999999999999999999999999999999998  679999999999998642 222 2


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..+++++|++.+++.+|+.+++.+.....    +.   ...+..+++.+.++.+++. +..++.+.+ |||||||||+|
T Consensus      1002 r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk----g~---~~~~~~~~v~~lL~~vgL~-~~~~~~~~~-LSGGqKQRLsL 1072 (2272)
T TIGR01257      1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLK----GR---SWEEAQLEMEAMLEDTGLH-HKRNEEAQD-LSGGMQRKLSV 1072 (2272)
T ss_pred             hhcEEEEecCCcCCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHcCCc-hhhcCChhh-CCHHHHHHHHH
Confidence            345889999999999999999987643221    11   1233345678889999996 567777765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVL  314 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~  314 (325)
                      ||||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+ ||||++|++|++++.|++...+..
T Consensus      1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~l-aDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257      1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLL-GDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred             HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEecCHHHHHHh
Confidence            999999999999999999999999999999999995 588999999999999887 699999999999999988755433


Q ss_pred             HhCCe
Q 020520          315 EEGGY  319 (325)
Q Consensus       315 ~~~~~  319 (325)
                      ...||
T Consensus      1151 ~g~gy 1155 (2272)
T TIGR01257      1151 FGTGF 1155 (2272)
T ss_pred             cCCcE
Confidence            33344

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=4.3e-43  Score=385.87  Aligned_cols=263  Identities=19%  Similarity=0.228  Sum_probs=200.6

Q ss_pred             hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCC-CC------------------------CCCCC-----CCCCCCcEE
Q 020520           30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPL-KS------------------------SSDGQ-----DEKSQPLLQ   79 (325)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~------------------------~~~~~-----~~~~~~~l~   79 (325)
                      .|+..+......++....+.+|+.+..+..+... ..                        ....+     .......|+
T Consensus      1231 ~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~ 1310 (1560)
T PTZ00243       1231 ATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLV 1310 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEE
Confidence            3444445556778888899999988875322110 00                        00000     001123699


Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF  159 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~  159 (325)
                      ++||+++|+++...+|+|+||+|++||.+||+|+||||||||+++|.|+  ++|++|+|.+||.++..++....++ .++
T Consensus      1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl--~~p~~G~I~IDG~di~~i~l~~LR~-~I~ 1387 (1560)
T PTZ00243       1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM--VEVCGGEIRVNGREIGAYGLRELRR-QFS 1387 (1560)
T ss_pred             EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEcccCCHHHHHh-cce
Confidence            9999999976445699999999999999999999999999999999998  7899999999999999988776554 589


Q ss_pred             EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccC---CCCCChHHHH
Q 020520          160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNV---NEGFSGGERK  230 (325)
Q Consensus       160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---~~~LSgGqrQ  230 (325)
                      ++||+|.+|.+ |+.+|+...          .+.++++    +.++++..++..      +.++..+   +.+|||||||
T Consensus      1388 iVpQdp~LF~g-TIreNIdp~----------~~~sdee----I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243       1388 MIPQDPVLFDG-TVRQNVDPF----------LEASSAE----VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred             EECCCCccccc-cHHHHhCcc----------cCCCHHH----HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH
Confidence            99999999986 888887421          1122333    333444444421      1123222   3469999999


Q ss_pred             HHHHHHHHHhC-CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLG-ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~-p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |++|||||+++ |+|||||||||+||+++.+.|.+.|++..+ ++|||+|+|+++.+..  +|+|+||++|+|++.|+++
T Consensus      1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~ti~~--~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243       1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLHTVAQ--YDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHHHHHh--CCEEEEEECCEEEEECCHH
Confidence            99999999996 899999999999999999999999998753 6899999999988875  6999999999999999875


Q ss_pred             HHHHHH
Q 020520          310 IATVLE  315 (325)
Q Consensus       310 ~~~~~~  315 (325)
                        ++++
T Consensus      1530 --eLl~ 1533 (1560)
T PTZ00243       1530 --ELVM 1533 (1560)
T ss_pred             --HHHh
Confidence              4554

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=7.3e-43  Score=321.00  Aligned_cols=208  Identities=21%  Similarity=0.251  Sum_probs=169.1

Q ss_pred             CcEEEEEEEEEECC------------------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccE
Q 020520           76 PLLQVTGLTAVIAE------------------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS  137 (325)
Q Consensus        76 ~~l~~~~ls~~y~~------------------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~  137 (325)
                      ..++++||++.|..                  ..+++|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl--~~p~~G~   80 (264)
T PRK13546          3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS--LSPTVGK   80 (264)
T ss_pred             ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceE
Confidence            35889999988843                  123589999999999999999999999999999999998  6799999


Q ss_pred             EEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccccc
Q 020520          138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN  217 (325)
Q Consensus       138 I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  217 (325)
                      |.++|..              .+++|++.+.+.+++.+++......    .+   ....+....+..+++.+++. +..+
T Consensus        81 I~~~g~~--------------~~~~~~~~~~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~  138 (264)
T PRK13546         81 VDRNGEV--------------SVIAISAGLSGQLTGIENIEFKMLC----MG---FKRKEIKAMTPKIIEFSELG-EFIY  138 (264)
T ss_pred             EEECCEE--------------eEEecccCCCCCCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhc
Confidence            9999851              2334665555667887776543211    11   11233334455677778885 4566


Q ss_pred             ccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          218 RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       218 ~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      +.+.. |||||+|||+|||||+.+|++|||||||+|||+.+++.+++.|.+++++|.|||++|||++++..+ ||++++|
T Consensus       139 ~~~~~-LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~-~d~i~~l  216 (264)
T PRK13546        139 QPVKK-YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQF-CTKIAWI  216 (264)
T ss_pred             CCccc-CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-cCEEEEE
Confidence            77664 999999999999999999999999999999999999999999999876788999999999998877 6999999


Q ss_pred             eCCEEEEEcCcc
Q 020520          298 EDGRIIKTGDAS  309 (325)
Q Consensus       298 ~~G~iv~~g~~~  309 (325)
                      ++|++++.|+.+
T Consensus       217 ~~G~i~~~g~~~  228 (264)
T PRK13546        217 EGGKLKDYGELD  228 (264)
T ss_pred             ECCEEEEeCCHH
Confidence            999999998865

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.6e-43  Score=351.97  Aligned_cols=226  Identities=19%  Similarity=0.165  Sum_probs=173.0

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-CccEEEECCEeCCCCCHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-~~G~I~~~g~~i~~~~~~~  152 (325)
                      ..++|+++|+++.|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  .++ ++|+|.++|+++.......
T Consensus       257 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~--~~~~~~G~i~~~g~~~~~~~~~~  332 (490)
T PRK10938        257 NEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD--HPQGYSNDLTLFGRRRGSGETIW  332 (490)
T ss_pred             CCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCcccCCeEEEecccCCCCCCHH
Confidence            4568999999999964  5699999999999999999999999999999999997  444 6999999998753211111


Q ss_pred             HhhccEEEeccCCccCCC--cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      ..+..+++++|++.++..  .++.+++...+...   .........+....+.++++.+++..+..++.+.+ |||||||
T Consensus       333 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~q  408 (490)
T PRK10938        333 DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS---IGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHS-LSWGQQR  408 (490)
T ss_pred             HHHhhceEECHHHHhhcccCCcHHHHHHhccccc---cccccCCCHHHHHHHHHHHHHcCCchhhccCchhh-CCHHHHH
Confidence            112358899998755432  34444432221100   00000011222345778899999963256777765 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC-cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK-NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||+|||||+.+|++|||||||+|||+.+++.+.++|+++++++ .|||+||||++++...+||++++|++|++++...
T Consensus       409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~  486 (490)
T PRK10938        409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ  486 (490)
T ss_pred             HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence            9999999999999999999999999999999999999997665 4799999999999764479999999999987643

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=2.6e-43  Score=308.61  Aligned_cols=184  Identities=27%  Similarity=0.346  Sum_probs=148.2

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH-HHHhhccEEEeccCCc-cC
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP-EERSLAGLFMSFQSPV-EI  168 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~-~~~~~~~i~~~~Q~~~-~~  168 (325)
                      ++.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++..... ....+..+++++|++. .+
T Consensus         4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   81 (190)
T TIGR01166         4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL--LRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL   81 (190)
T ss_pred             ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence            35799999999999999999999999999999999998  67999999999998752111 1112245889999973 22


Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEe
Q 020520          169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILD  248 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLD  248 (325)
                      ...++.+++.+....    .+   ....+...++.++++.+++. +..++.+.+ ||||||||++|||||+.+|++||||
T Consensus        82 ~~~tv~~nl~~~~~~----~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~laral~~~p~llllD  152 (190)
T TIGR01166        82 FAADVDQDVAFGPLN----LG---LSEAEVERRVREALTAVGAS-GLRERPTHC-LSGGEKKRVAIAGAVAMRPDVLLLD  152 (190)
T ss_pred             ccccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCch-hhhhCChhh-CCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            346888887653211    11   12233345577788999996 566777764 9999999999999999999999999


Q ss_pred             CcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020520          249 EIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       249 EPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~  285 (325)
                      |||+|||+.+++.+.++|++++++|.|||++|||+++
T Consensus       153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            9999999999999999999997678899999999865

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=2.6e-43  Score=311.91  Aligned_cols=194  Identities=27%  Similarity=0.351  Sum_probs=151.7

Q ss_pred             EEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           78 LQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        78 l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ++++||+++|++..   +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|            
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~--~~~~~G~i~~~g------------   66 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--LEKLSGSVSVPG------------   66 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc--CCCCCCeEEEcC------------
Confidence            47899999997532   3699999999999999999999999999999999998  689999999998            


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhcCCc-cccccccCCCCCChHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERLSMK-TDFLNRNVNEGFSGGE  228 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~~LSgGq  228 (325)
                        .++|++|++.+++ .++.+++.....          ........     .+.+.+..+... ....++... .|||||
T Consensus        67 --~i~~~~q~~~l~~-~t~~enl~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~lS~G~  132 (204)
T cd03250          67 --SIAYVSQEPWIQN-GTIRENILFGKP----------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGI-NLSGGQ  132 (204)
T ss_pred             --EEEEEecCchhcc-CcHHHHhccCCC----------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCC-cCCHHH
Confidence              3788999998774 588887654211          00111111     112223332211 112334444 599999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH-HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK-AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      |||++|||||+.+|+++||||||++||+.+++.+.+ +++++.++|.|||++||+++.+..  +|++++|++|+
T Consensus       133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~--~d~i~~l~~G~  204 (204)
T cd03250         133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVVLDNGR  204 (204)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh--CCEEEEEeCCC
Confidence            999999999999999999999999999999999998 566676668899999999998875  69999999885

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-43  Score=311.85  Aligned_cols=226  Identities=26%  Similarity=0.289  Sum_probs=180.4

Q ss_pred             CCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH
Q 020520           71 DEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        71 ~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~  150 (325)
                      .....++|+++|++++|+  ++++|+|+|++|++||.++|+||||||||||+++++|.  +.|++|.+.+.|+.....+.
T Consensus        25 ~~~~~~li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~--~~pssg~~~~~G~~~G~~~~  100 (257)
T COG1119          25 IEINEPLIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGET  100 (257)
T ss_pred             CCCCcceEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc--cCCCCCceeeeeeeccCCcc
Confidence            334567899999999996  48899999999999999999999999999999999997  67889999999998866544


Q ss_pred             -HHHhhccEEEecc--CCccCCCcchHHHHHHHHHHHhhhcCCCC-CChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020520          151 -EERSLAGLFMSFQ--SPVEIPGVNNIDFLHMAYNARRRKLGQPE-IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG  226 (325)
Q Consensus       151 -~~~~~~~i~~~~Q--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg  226 (325)
                       .+.++ .|++|.-  +..+....++.+.+..++...   .+.+. ...++..+++..+++.+++. ++.++.... ||-
T Consensus       101 ~~elrk-~IG~vS~~L~~~~~~~~~v~dvVlSg~~~s---iG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~-LS~  174 (257)
T COG1119         101 IFELRK-RIGLVSSELHERFRVRETVRDVVLSGFFAS---IGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGS-LSQ  174 (257)
T ss_pred             hHHHHH-HhCccCHHHHhhcccccccceeeeeccccc---ccccccCCCHHHHHHHHHHHHHcchh-hhccCchhh-cCH
Confidence             33222 3455432  222223345555555444321   22222 22345567788899999996 578888765 999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC--CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP--KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      ||||||.|||||+.+|++|||||||+|||...++.+.+.|.++...  +.++|+|||..+++... .++++.+++|+++.
T Consensus       175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~-~th~lll~~g~v~~  253 (257)
T COG1119         175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC-FTHRLLLKEGEVVA  253 (257)
T ss_pred             hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccc-cceEEEeeCCceee
Confidence            9999999999999999999999999999999999999999999754  67999999999998875 68999999999998


Q ss_pred             EcC
Q 020520          305 TGD  307 (325)
Q Consensus       305 ~g~  307 (325)
                      .|.
T Consensus       254 ~g~  256 (257)
T COG1119         254 QGK  256 (257)
T ss_pred             ccc
Confidence            773

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.8e-44  Score=304.60  Aligned_cols=227  Identities=23%  Similarity=0.363  Sum_probs=197.0

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC-EeCCCCCHHHHh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG-ENLLEMEPEERS  154 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g-~~i~~~~~~~~~  154 (325)
                      ++|+++||+++|++  ..+|+++||+|.+||.-+|||||||||||++.+|+|-  -+|+.|+|+++| .++..++..+..
T Consensus         4 ~iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK--trp~~G~v~f~g~~dl~~~~e~~IA   79 (249)
T COG4674           4 IILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK--TRPQEGEVLFDGDTDLTKLPEHRIA   79 (249)
T ss_pred             ceEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc--CCCCcceEEEcCchhhccCCHHHHH
Confidence            58999999999964  7899999999999999999999999999999999996  689999999999 999999988888


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC--CCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ--PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      +.+|+--||.|..|..+++.+|+....+.....+..  ... ..+...++++.|+..++. +..++..+ .||.||||++
T Consensus        80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~-~~~e~~ride~La~igL~-~~~~~~A~-~LSHGqKQwL  156 (249)
T COG4674          80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL-RAEERRRIDELLATIGLG-DERDRLAA-LLSHGQKQWL  156 (249)
T ss_pred             HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhc-ChhHHHHHHHHHHHcccc-hhhhhhhh-hhccchhhhh
Confidence            889999999999999999999998875432111100  011 223346789999999997 45666665 4999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA  311 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~  311 (325)
                      .|++.++++|++|+||||++|+-.+......++|+.++. +.+|++|.||++++..+ +++|-||+.|.+.++|+.++.
T Consensus       157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~-A~~VTVlh~G~VL~EGsld~v  233 (249)
T COG4674         157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREI-ADKVTVLHEGSVLAEGSLDEV  233 (249)
T ss_pred             hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHh-hheeEEEeccceeecccHHHh
Confidence            999999999999999999999999999999999999974 47999999999999998 699999999999999987643

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=3.7e-43  Score=327.39  Aligned_cols=228  Identities=26%  Similarity=0.362  Sum_probs=186.2

Q ss_pred             CCCcEEEEEEEEEECC--CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCC
Q 020520           74 SQPLLQVTGLTAVIAE--SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEM  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~--~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~  148 (325)
                      ..++|+++||++.|..  +...++++|||+|++||.+||||+||||||-..+.++|++.+++   -+|+|.|+|+++...
T Consensus         3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            3578999999999952  34679999999999999999999999999999999999854322   379999999999988


Q ss_pred             CHHHHhh---ccEEEeccCCcc--CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCC
Q 020520          149 EPEERSL---AGLFMSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVN  221 (325)
Q Consensus       149 ~~~~~~~---~~i~~~~Q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~  221 (325)
                      +..+++.   ..|+|+||+|..  .|-.+...-+.-.....      ......+.++++.++|+.+|+..  ..++.+++
T Consensus        83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H------rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH  156 (534)
T COG4172          83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH------RGLSRAAARARALELLELVGIPEPEKRLDAYPH  156 (534)
T ss_pred             CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH------hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc
Confidence            8766543   259999999952  23233322222222211      12334566788899999999953  34556666


Q ss_pred             CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      + |||||||||.||+||+.+|++||.||||.+||...+.+|+++|+++.++ |+++++||||+..+..+ +|||+||.+|
T Consensus       157 e-LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~-ADrV~VM~~G  234 (534)
T COG4172         157 E-LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKF-ADRVYVMQHG  234 (534)
T ss_pred             c-cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHh-hhhEEEEecc
Confidence            4 9999999999999999999999999999999999999999999999865 99999999999999998 7999999999


Q ss_pred             EEEEEcCcc
Q 020520          301 RIIKTGDAS  309 (325)
Q Consensus       301 ~iv~~g~~~  309 (325)
                      ++++.|..+
T Consensus       235 ~ivE~~~t~  243 (534)
T COG4172         235 EIVETGTTE  243 (534)
T ss_pred             EEeecCcHH
Confidence            999999754

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-42  Score=340.11  Aligned_cols=210  Identities=21%  Similarity=0.284  Sum_probs=171.6

Q ss_pred             CCCcEEEEEEEEEECCCc-ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           74 SQPLLQVTGLTAVIAESK-QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~-~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      ..++++++||++.|+++. +.+|+|+||+|++|+++||+||||||||||+++|+|+  .+|++|+|.++|.+..      
T Consensus        18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL--l~P~sGeI~I~G~~~~------   89 (549)
T PRK13545         18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV--TMPNKGTVDIKGSAAL------   89 (549)
T ss_pred             ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCceEEEECCEeee------
Confidence            346899999999997532 4699999999999999999999999999999999998  6799999999997520      


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                           +.   +.+.+++.+++.+++.+....    .+   ....+....+.++++.+++. +..++.+.. ||||||||+
T Consensus        90 -----i~---~~~~l~~~lTV~EnL~l~~~~----~~---~~~~e~~e~i~elLe~lgL~-~~ld~~~~~-LSGGQrQRV  152 (549)
T PRK13545         90 -----IA---ISSGLNGQLTGIENIELKGLM----MG---LTKEKIKEIIPEIIEFADIG-KFIYQPVKT-YSSGMKSRL  152 (549)
T ss_pred             -----EE---eccccCCCCcHHHHHHhhhhh----cC---CCHHHHHHHHHHHHHHcCCh-hHhhCCccc-CCHHHHHHH
Confidence                 11   223344556888876543211    01   11233344566788889985 556777764 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||+|||+.+++.+++.|++++++|.|||++|||++++..+ ||++++|++|++++.|+++
T Consensus       153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l-~DrIivL~~GkIv~~G~~~  228 (549)
T PRK13545        153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSF-CTKALWLHYGQVKEYGDIK  228 (549)
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999876788999999999999887 6999999999999999765

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1e-42  Score=311.20  Aligned_cols=202  Identities=22%  Similarity=0.287  Sum_probs=156.7

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH---HHhh
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE---ERSL  155 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~---~~~~  155 (325)
                      .+.|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+..   ...+
T Consensus         2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (218)
T cd03290           2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE--MQTLEGKVHWSNKNESEPSFEATRSRNR   78 (218)
T ss_pred             eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCeEEECCcccccccccccchhhc
Confidence            578999999753 6799999999999999999999999999999999998  678999999999987554321   1223


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----------ccccccCCCCCC
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----------DFLNRNVNEGFS  225 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS  225 (325)
                      .+++|++|++.++ ..++.+++.....          ....+    ..+.++.+++..          ...++.+. .||
T Consensus        79 ~~i~~~~q~~~~~-~~t~~~nl~~~~~----------~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~LS  142 (218)
T cd03290          79 YSVAYAAQKPWLL-NATVEENITFGSP----------FNKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERGI-NLS  142 (218)
T ss_pred             ceEEEEcCCCccc-cccHHHHHhhcCc----------CCHHH----HHHHHHHhCcHHHHHhCcCccccCcccCCC-cCC
Confidence            4688999999877 4677777654310          01111    112233333321          11234444 599


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH--HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK--AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      |||||||+|||||+.+|++|||||||++||+.+++.+++  +++.+.+.|.|||++||+++.+. . +|++++|++|.
T Consensus       143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~-~d~i~~l~~G~  218 (218)
T cd03290         143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-H-ADWIIAMKDGS  218 (218)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-h-CCEEEEecCCC
Confidence            999999999999999999999999999999999999998  67766666889999999999875 4 69999998873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.6e-43  Score=332.59  Aligned_cols=263  Identities=19%  Similarity=0.344  Sum_probs=202.2

Q ss_pred             hhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCC
Q 020520           36 LCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNG  115 (325)
Q Consensus        36 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NG  115 (325)
                      ..+....|......+++.++++..++..+.++..+-.....-++++||+|.|.. ++++|+||||++.+|+.+||+||||
T Consensus       496 GT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p-~k~vl~disF~v~pGktvAlVG~SG  574 (790)
T KOG0056|consen  496 GTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP-GKPVLSDISFTVQPGKTVALVGPSG  574 (790)
T ss_pred             HHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC-CCceeecceEEecCCcEEEEECCCC
Confidence            334445677778888999988876665555444444455668999999999975 5899999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCCh
Q 020520          116 SGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP  195 (325)
Q Consensus       116 sGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (325)
                      +||||++|+|..+  ++.++|.|.+||+|+...+....+ ..||.||||..+|.+ |...|+.         ++.+.++.
T Consensus       575 aGKSTimRlLfRf--fdv~sGsI~iDgqdIrnvt~~SLR-s~IGVVPQDtvLFNd-TI~yNIr---------yak~~Asn  641 (790)
T KOG0056|consen  575 AGKSTIMRLLFRF--FDVNSGSITIDGQDIRNVTQSSLR-SSIGVVPQDTVLFND-TILYNIR---------YAKPSASN  641 (790)
T ss_pred             CchhHHHHHHHHH--hhccCceEEEcCchHHHHHHHHHH-HhcCcccCcceeecc-eeeehee---------ecCCCCCh
Confidence            9999999999998  778999999999999887665544 347889999988765 3322322         34444555


Q ss_pred             HHHHHh-----HHHHHHhcCCccccccccCCC---CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHH
Q 020520          196 IEFYAY-----LYPKLERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN  267 (325)
Q Consensus       196 ~~~~~~-----~~~~l~~~~l~~~~~~~~~~~---~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~  267 (325)
                      ++..+.     +++.+-.+.-+   .+..+++   .|||||||||||||+++++|.+++|||.||+||..+++.|...|.
T Consensus       642 eevyaAAkAA~IHdrIl~fPeg---Y~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~  718 (790)
T KOG0056|consen  642 EEVYAAAKAAQIHDRILQFPEG---YNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALA  718 (790)
T ss_pred             HHHHHHHHHhhHHHHHhcCchh---hhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH
Confidence            554433     23333333322   2333332   599999999999999999999999999999999999999999999


Q ss_pred             hccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh-CCee
Q 020520          268 GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE-GGYK  320 (325)
Q Consensus       268 ~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~-~~~~  320 (325)
                      ++.+. +|-|+|.|.+..+.  .+|.|+++++|+|++.|..+  +++.. +|.|
T Consensus       719 rlca~-RTtIVvAHRLSTiv--nAD~ILvi~~G~IvErG~He--eLl~rdgG~Y  767 (790)
T KOG0056|consen  719 RLCAN-RTTIVVAHRLSTIV--NADLILVISNGRIVERGRHE--ELLKRDGGAY  767 (790)
T ss_pred             HHhcC-CceEEEeeeehhee--cccEEEEEeCCeEeecCcHH--HHHhccCCcH
Confidence            99864 57788999776664  47999999999999999765  44444 5543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.2e-42  Score=379.98  Aligned_cols=252  Identities=19%  Similarity=0.273  Sum_probs=186.9

Q ss_pred             hhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCc
Q 020520           38 RRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGS  116 (325)
Q Consensus        38 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGs  116 (325)
                      ....++.+..+..|+.++++..+...... ..........|+++||+|+|+.. ++++|+|+||+|++||++||+|||||
T Consensus       344 ~~~~~~~a~~a~~ri~~ii~~~~~~~~~~-~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGs  422 (1466)
T PTZ00265        344 NITEYMKSLEATNSLYEIINRKPLVENND-DGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGC  422 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCC
Confidence            34568888888999998887554322111 11111112369999999999743 24699999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCccEEEE-CCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh---------h
Q 020520          117 GKSTLSKVLVGHPDYEVTEGSVVF-KGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR---------R  186 (325)
Q Consensus       117 GKSTLl~~l~Gl~~~~p~~G~I~~-~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~---------~  186 (325)
                      |||||+++|+|+  ++|++|+|.+ +|.++..++...++ ..+++++|++.+|+. |+.+|+.++.....         .
T Consensus       423 GKSTLl~lL~gl--~~p~~G~I~i~~g~~i~~~~~~~lr-~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~  498 (1466)
T PTZ00265        423 GKSTILKLIERL--YDPTEGDIIINDSHNLKDINLKWWR-SKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYN  498 (1466)
T ss_pred             CHHHHHHHHHHh--ccCCCCeEEEeCCcchhhCCHHHHH-HhccEecccccchhc-cHHHHHHhcCCCccccchhccccc
Confidence            999999999998  8899999999 56888777665443 358899999999875 89999876421000         0


Q ss_pred             hc---------------------------------------CCCCCChHHHHHhHHHHHHhcCCcc---------ccccc
Q 020520          187 KL---------------------------------------GQPEIGPIEFYAYLYPKLERLSMKT---------DFLNR  218 (325)
Q Consensus       187 ~~---------------------------------------~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~  218 (325)
                      ..                                       .......    +.+.++++.+++..         +..-.
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~v~~a~~~~~l~~~i~~lp~g~dT~vg  574 (1466)
T PTZ00265        499 EDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD----SEVVDVSKKVLIHDFVSALPDKYETLVG  574 (1466)
T ss_pred             cccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH----HHHHHHHHHhCcHHHHHhCccccCceeC
Confidence            00                                       0001111    22444445554421         11111


Q ss_pred             cCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          219 NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       219 ~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      ..+..||||||||++|||||+++|+||||||||++||+.+++.+.+.|+++.+ +|+|+|+|||+++.+. . ||+|++|
T Consensus       575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~-~-aD~Iivl  652 (1466)
T PTZ00265        575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR-Y-ANTIFVL  652 (1466)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence            22345999999999999999999999999999999999999999999999875 5889999999999875 4 7999999


Q ss_pred             eCC
Q 020520          298 EDG  300 (325)
Q Consensus       298 ~~G  300 (325)
                      ++|
T Consensus       653 ~~g  655 (1466)
T PTZ00265        653 SNR  655 (1466)
T ss_pred             eCC
Confidence            986

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.6e-42  Score=354.28  Aligned_cols=225  Identities=25%  Similarity=0.321  Sum_probs=181.9

Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC--CccEEEECCEeCCCCCHHHHhhcc
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++|++++|++  +.+|+|+|+++++||++||+||||||||||+++|+|+  .+|  .+|+|.++|+++..   ..+  ..
T Consensus        71 ~~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~--~~~~~~sG~I~inG~~~~~---~~~--~~  141 (659)
T PLN03211         71 ISDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR--IQGNNFTGTILANNRKPTK---QIL--KR  141 (659)
T ss_pred             cccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC--CCCCceeEEEEECCEECch---hhc--cc
Confidence            5667777753  6799999999999999999999999999999999997  455  48999999998642   112  34


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccc-----cCCCCCChHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR-----NVNEGFSGGERKRN  232 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~LSgGqrQRv  232 (325)
                      ++|++|++.+++.+|+.+++......+   .. .....++..+++.++++.+|+. +..++     ... +|||||||||
T Consensus       142 i~yv~Q~~~l~~~lTV~E~l~~~a~~~---~~-~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~-~LSgGerqRv  215 (659)
T PLN03211        142 TGFVTQDDILYPHLTVRETLVFCSLLR---LP-KSLTKQEKILVAESVISELGLT-KCENTIIGNSFIR-GISGGERKRV  215 (659)
T ss_pred             eEEECcccccCCcCCHHHHHHHHHHhC---CC-CCCCHHHHHHHHHHHHHHcCCh-hhcCceeCCCCCC-CcChhhhhHH
Confidence            889999999999999999987643211   11 1122344456678889999995 33332     233 5999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh-HHhhhCCcEEEEEeCCEEEEEcCccH-
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR-LLEFIKPTFIHIMEDGRIIKTGDASI-  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~-~~~~~~~d~i~vl~~G~iv~~g~~~~-  310 (325)
                      +|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++|++++.|+++. 
T Consensus       216 ~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~-~D~iilL~~G~iv~~G~~~~~  294 (659)
T PLN03211        216 SIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM-FDSVLVLSEGRCLFFGKGSDA  294 (659)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hceEEEecCCcEEEECCHHHH
Confidence            9999999999999999999999999999999999999877899999999997 46665 69999999999999998764 


Q ss_pred             HHHHHhCCee
Q 020520          311 ATVLEEGGYK  320 (325)
Q Consensus       311 ~~~~~~~~~~  320 (325)
                      .+.++..|+.
T Consensus       295 ~~~f~~~G~~  304 (659)
T PLN03211        295 MAYFESVGFS  304 (659)
T ss_pred             HHHHHHCCCC
Confidence            3556766664

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=6.2e-42  Score=350.57  Aligned_cols=222  Identities=22%  Similarity=0.319  Sum_probs=188.2

Q ss_pred             CcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           76 PLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ++|+++|++++|+.+  .+.+|+|+||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++...+...+
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~i~~~~~~~~   80 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL--DKPTSGTYRVAGQDVATLDADAL   80 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEcCcCCHHHH
Confidence            489999999999632  24699999999999999999999999999999999998  67999999999999987765443


Q ss_pred             ---hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          154 ---SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       154 ---~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                         ++..+++++|++.+++..++.+++......    .+   ....+...++.+.++.+++. +..++.+.. |||||+|
T Consensus        81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----~~---~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~-LS~Gq~q  151 (648)
T PRK10535         81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVY----AG---LERKQRLLRAQELLQRLGLE-DRVEYQPSQ-LSGGQQQ  151 (648)
T ss_pred             HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHCCCh-hhhcCCccc-CCHHHHH
Confidence               235689999999999888888887653211    11   11233445677889999996 566777764 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |++|||||+.+|++|||||||+|||+.+++.+.++|+++++++.|+|++||+++.+. . ||++++|++|++++.|+.+.
T Consensus       152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~-~d~i~~l~~G~i~~~g~~~~  229 (648)
T PRK10535        152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-Q-AERVIEIRDGEIVRNPPAQE  229 (648)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-h-CCEEEEEECCEEEeecCccc
Confidence            999999999999999999999999999999999999998767899999999999875 4 69999999999999998763

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-42  Score=346.48  Aligned_cols=212  Identities=20%  Similarity=0.289  Sum_probs=170.2

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++|++++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|.            .
T Consensus         1 ml~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~------------~   64 (530)
T PRK15064          1 MLSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD--LEPSAGNVSLDPN------------E   64 (530)
T ss_pred             CEEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCC------------C
Confidence            5899999999963  5799999999999999999999999999999999998  6789999999872            1


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHH-Hh------hhcCCCCC------------------ChHHHHHhHHHHHHhcCC
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNA-RR------RKLGQPEI------------------GPIEFYAYLYPKLERLSM  211 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~------------------~~~~~~~~~~~~l~~~~l  211 (325)
                      .+++++|++.+++.+++.+++...... ..      ........                  ...+...++.++++.+++
T Consensus        65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl  144 (530)
T PRK15064         65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI  144 (530)
T ss_pred             EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence            378899999888888988887643210 00      00000000                  001123456778999999


Q ss_pred             ccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCC
Q 020520          212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP  291 (325)
Q Consensus       212 ~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~  291 (325)
                      .....++.+. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|.+   .|.|||+||||++++..+ |
T Consensus       145 ~~~~~~~~~~-~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~-~  219 (530)
T PRK15064        145 PEEQHYGLMS-EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSV-C  219 (530)
T ss_pred             ChhHhcCchh-hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhh-c
Confidence            5323345555 5999999999999999999999999999999999999999999974   378999999999999887 6


Q ss_pred             cEEEEEeCCEEE-EEcCcc
Q 020520          292 TFIHIMEDGRII-KTGDAS  309 (325)
Q Consensus       292 d~i~vl~~G~iv-~~g~~~  309 (325)
                      |++++|++|+++ +.|+++
T Consensus       220 d~i~~l~~g~i~~~~g~~~  238 (530)
T PRK15064        220 THMADLDYGELRVYPGNYD  238 (530)
T ss_pred             ceEEEEeCCEEEEecCCHH
Confidence            999999999994 677764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=3.7e-42  Score=377.88  Aligned_cols=255  Identities=19%  Similarity=0.199  Sum_probs=197.4

Q ss_pred             hHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCC-------------CCC----CCCCCcEEEEEEEEEECCCccccee
Q 020520           34 PLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSD-------------GQD----EKSQPLLQVTGLTAVIAESKQEILK   96 (325)
Q Consensus        34 ~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-------------~~~----~~~~~~l~~~~ls~~y~~~~~~iL~   96 (325)
                      .+......+.....+.+|+.+..+.+++.......             ...    -+....|+++||+++|+.+.+++|+
T Consensus      1157 ~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~ 1236 (1490)
T TIGR01271      1157 WAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQ 1236 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceee
Confidence            33444556777788889998887655443211000             000    0123469999999999765578999


Q ss_pred             eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHH
Q 020520           97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDF  176 (325)
Q Consensus        97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~  176 (325)
                      |+||+|++||.+||+|+||||||||+++|+|+  +. .+|+|.+||.++..++....+. .++++||+|.+|++ |+.+|
T Consensus      1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl--~~-~~G~I~IdG~di~~i~~~~lR~-~is~IpQdp~LF~G-TIR~N 1311 (1490)
T TIGR01271      1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL--LS-TEGEIQIDGVSWNSVTLQTWRK-AFGVIPQKVFIFSG-TFRKN 1311 (1490)
T ss_pred             ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh--cC-CCcEEEECCEEcccCCHHHHHh-ceEEEeCCCccCcc-CHHHH
Confidence            99999999999999999999999999999998  54 7899999999999988776553 58899999999986 88888


Q ss_pred             HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccC---CCCCChHHHHHHHHHHHHHhCCCEEEE
Q 020520          177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNV---NEGFSGGERKRNEILQLAVLGADLAIL  247 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---~~~LSgGqrQRv~iAraL~~~p~lLlL  247 (325)
                      +...        .  ..++++    +.++++.+++..      +-++..+   +.+||||||||++|||||+++|+||||
T Consensus      1312 Ldp~--------~--~~tdee----i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlL 1377 (1490)
T TIGR01271      1312 LDPY--------E--QWSDEE----IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 (1490)
T ss_pred             hCcc--------c--CCCHHH----HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            7431        0  112222    344455555421      1122222   335999999999999999999999999


Q ss_pred             eCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       248 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+||.++.+.|.+.|++..+ ++|||+|||+++.+..  +|+|++|++|+|++.|+++.
T Consensus      1378 DEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~--~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271      1378 DEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEALLE--CQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHh--CCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999998754 6899999999988875  69999999999999998753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-42  Score=345.65  Aligned_cols=209  Identities=25%  Similarity=0.369  Sum_probs=172.1

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||+++|++  +.+|+++||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|.           
T Consensus       317 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~p~~G~i~~~~~-----------  381 (530)
T PRK15064        317 RNALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE--LEPDSGTVKWSEN-----------  381 (530)
T ss_pred             CceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCc-----------
Confidence            358999999999964  5799999999999999999999999999999999998  6799999999873           


Q ss_pred             hccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          155 LAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       155 ~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                       ..++|++|++.  +++.+++.+++....        ...    .....+.++++.+++..+..++.+.+ |||||||||
T Consensus       382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~--------~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~qrv  447 (530)
T PRK15064        382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR--------QEG----DDEQAVRGTLGRLLFSQDDIKKSVKV-LSGGEKGRM  447 (530)
T ss_pred             -eEEEEEcccccccCCCCCcHHHHHHHhc--------cCC----ccHHHHHHHHHHcCCChhHhcCcccc-cCHHHHHHH
Confidence             24789999874  445577777653210        000    01234667889999853456777765 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCccHH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDASIA  311 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~~~~  311 (325)
                      +|||||+.+|++|||||||+|||+.+++.+.+.|+++   +.|||+||||++++..+ ||++++|++|+++ +.|+++  
T Consensus       448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~g~i~~~~g~~~--  521 (530)
T PRK15064        448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSL-ATRIIEITPDGVVDFSGTYE--  521 (530)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHh-CCEEEEEECCeEEEcCCCHH--
Confidence            9999999999999999999999999999999999987   34999999999999887 6999999999998 677654  


Q ss_pred             HHHHhCC
Q 020520          312 TVLEEGG  318 (325)
Q Consensus       312 ~~~~~~~  318 (325)
                      ++++..|
T Consensus       522 ~~~~~~~  528 (530)
T PRK15064        522 EYLRSQG  528 (530)
T ss_pred             HHHHHhC
Confidence            4445443

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=2.8e-42  Score=347.86  Aligned_cols=213  Identities=23%  Similarity=0.336  Sum_probs=172.9

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+  ++|++|+|.+++.           
T Consensus         4 ~~~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~--~~p~~G~i~~~~~-----------   69 (556)
T PRK11819          4 QYIYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--DKEFEGEARPAPG-----------   69 (556)
T ss_pred             cEEEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCC-----------
Confidence            458999999999962 36799999999999999999999999999999999998  6799999999741           


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHH-H------h---hhcCCCC--C-----------------ChHHHHHhHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNA-R------R---RKLGQPE--I-----------------GPIEFYAYLYPK  205 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~-~------~---~~~~~~~--~-----------------~~~~~~~~~~~~  205 (325)
                       ..++|++|++.+++.+++.+++...... .      .   .......  .                 ...+...++.++
T Consensus        70 -~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (556)
T PRK11819         70 -IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA  148 (556)
T ss_pred             -CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence             2488999999888888999988653210 0      0   0000000  0                 000123456778


Q ss_pred             HHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020520          206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       206 l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~  285 (325)
                      ++.+++. . .++.+.+ |||||||||+|||||+.+|++|||||||++||+.+++++.+.|+++.   .|||+||||+++
T Consensus       149 l~~~gl~-~-~~~~~~~-LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~  222 (556)
T PRK11819        149 MDALRCP-P-WDAKVTK-LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYF  222 (556)
T ss_pred             HHhCCCC-c-ccCchhh-cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHH
Confidence            8999984 3 5677764 99999999999999999999999999999999999999999999873   499999999999


Q ss_pred             HhhhCCcEEEEEeCCEEE-EEcCcc
Q 020520          286 LEFIKPTFIHIMEDGRII-KTGDAS  309 (325)
Q Consensus       286 ~~~~~~d~i~vl~~G~iv-~~g~~~  309 (325)
                      +..+ ||+|++|++|+++ +.|+.+
T Consensus       223 ~~~~-~d~i~~l~~g~i~~~~g~~~  246 (556)
T PRK11819        223 LDNV-AGWILELDRGRGIPWEGNYS  246 (556)
T ss_pred             HHhh-cCeEEEEeCCEEEEecCCHH
Confidence            9987 6999999999986 667654

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.1e-42  Score=301.78  Aligned_cols=192  Identities=17%  Similarity=0.257  Sum_probs=156.6

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++|++++|++  +.+++ +||+|++||+++|+|+||||||||+++|+|+  .+|++|+|.++|.++....     ..
T Consensus         1 ~l~~~~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~-----~~   70 (195)
T PRK13541          1 MLSLHQLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGI--MQPSSGNIYYKNCNINNIA-----KP   70 (195)
T ss_pred             CeEEEEeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCcccChhh-----hh
Confidence            5889999999963  44554 9999999999999999999999999999998  6799999999999875432     12


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|++.+++..++.+++......    ..     .   .+.+.++++.+++. +..++.+. .||||||||++|||
T Consensus        71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~----~~-----~---~~~~~~~l~~~~l~-~~~~~~~~-~LS~G~~~rl~la~  136 (195)
T PRK13541         71 YCTYIGHNLGLKLEMTVFENLKFWSEI----YN-----S---AETLYAAIHYFKLH-DLLDEKCY-SLSSGMQKIVAIAR  136 (195)
T ss_pred             hEEeccCCcCCCccCCHHHHHHHHHHh----cc-----c---HHHHHHHHHHcCCH-hhhccChh-hCCHHHHHHHHHHH
Confidence            367888988777778888887553211    11     0   12355667888885 45666665 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEE
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI  294 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i  294 (325)
                      ||+.+|++|||||||+|||+.+++.+.+.|+++.+++.|||++|||++.+..  +|.+
T Consensus       137 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~--~~~~  192 (195)
T PRK13541        137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS--AQIL  192 (195)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch--hhee
Confidence            9999999999999999999999999999998766668899999999988876  3543

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=5.5e-42  Score=307.79  Aligned_cols=195  Identities=22%  Similarity=0.276  Sum_probs=156.2

Q ss_pred             EEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCC--CcchHHHH
Q 020520          100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP--GVNNIDFL  177 (325)
Q Consensus       100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~--~~~~~~~~  177 (325)
                      |+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+++..     . +..++|++|++.++.  ..++.+++
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~-----~-~~~i~~v~q~~~~~~~~~~tv~~~l   72 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGL--IPPAKGTVKVAGASPGK-----G-WRHIGYVPQRHEFAWDFPISVAHTV   72 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCccchH-----h-hCcEEEecccccccCCCCccHHHHH
Confidence            57899999999999999999999999998  67999999999987531     1 235889999986543  35677776


Q ss_pred             HHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHH
Q 020520          178 HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD  257 (325)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~  257 (325)
                      .............   ........+.++++.+++. +..++.+.+ ||||||||++|||||+.+|++|||||||++||+.
T Consensus        73 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LS~G~~qrv~laral~~~p~llilDEP~~~LD~~  147 (223)
T TIGR03771        73 MSGRTGHIGWLRR---PCVADFAAVRDALRRVGLT-ELADRPVGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP  147 (223)
T ss_pred             HhccccccccccC---CcHHHHHHHHHHHHHhCCc-hhhcCChhh-CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            5431100000000   1112234577788999996 556777764 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       258 ~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +++.+.+.|+++.++|.|||++|||++++..+ ||+++++ +|++++.|+.+
T Consensus       148 ~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~-~d~i~~l-~G~i~~~~~~~  197 (223)
T TIGR03771       148 TQELLTELFIELAGAGTAILMTTHDLAQAMAT-CDRVVLL-NGRVIADGTPQ  197 (223)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEE-CCEEEeecCHH
Confidence            99999999999976688999999999988877 6999999 89999998765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=8.2e-42  Score=293.27  Aligned_cols=163  Identities=20%  Similarity=0.275  Sum_probs=138.6

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++ ++.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.            ..
T Consensus         1 i~~~~~~~~~~~-~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~~~------------~~   65 (166)
T cd03223           1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL--WPWGSGRIGMPEG------------ED   65 (166)
T ss_pred             CEEEEEEEEcCC-CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCC------------ce
Confidence            478999999963 35799999999999999999999999999999999998  6789999999873            24


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|++.++ ..++.+++...                                      ... .||||||||++||||
T Consensus        66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~-~LS~G~~~rv~lara  105 (166)
T cd03223          66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDD-VLSGGEQQRLAFARL  105 (166)
T ss_pred             EEEECCCCccc-cccHHHHhhcc--------------------------------------CCC-CCCHHHHHHHHHHHH
Confidence            78899998654 34555443110                                      122 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      |+.+|++|||||||++||+.+++.+.+.|+++   +.|+|++|||+++. .. +|++++|++|
T Consensus       106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~~-~d~i~~l~~~  163 (166)
T cd03223         106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW-KF-HDRVLDLDGE  163 (166)
T ss_pred             HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH-hh-CCEEEEEcCC
Confidence            99999999999999999999999999999987   47999999999875 45 7999999875

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.7e-43  Score=291.30  Aligned_cols=208  Identities=26%  Similarity=0.419  Sum_probs=176.6

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++++.  |..++.++|+++||++.+||+++|+||||||||||+|+++-|  ..|++|+++|.|++++.+.+...+. .
T Consensus         4 le~kq~~--y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L--isp~~G~l~f~Ge~vs~~~pea~Rq-~   78 (223)
T COG4619           4 LELKQVG--YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL--ISPTSGTLLFEGEDVSTLKPEAYRQ-Q   78 (223)
T ss_pred             hHHHHHH--hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc--cCCCCceEEEcCccccccChHHHHH-H
Confidence            4555555  333457899999999999999999999999999999999998  6899999999999999988876443 3


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +.|+.|.|.+|++ |+.+|+-+.+..+...   ++      ..++.+.++++++...++.+.+. .||||||||++|+|-
T Consensus        79 VsY~~Q~paLfg~-tVeDNlifP~~~r~rr---~d------r~aa~~llar~~l~~~~L~k~it-~lSGGE~QriAliR~  147 (223)
T COG4619          79 VSYCAQTPALFGD-TVEDNLIFPWQIRNRR---PD------RAAALDLLARFALPDSILTKNIT-ELSGGEKQRIALIRN  147 (223)
T ss_pred             HHHHHcCcccccc-chhhccccchHHhccC---CC------hHHHHHHHHHcCCchhhhcchhh-hccchHHHHHHHHHH
Confidence            6788899999875 7888887777654321   11      23466789999998778888876 499999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      |..-|+||+||||||+||+.+++.|.++|.++. .+..+++.||||.+.+... +|+++.+..|.+
T Consensus       148 Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rh-a~k~itl~~G~~  212 (223)
T COG4619         148 LQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRH-ADKVITLQPGHA  212 (223)
T ss_pred             hhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhh-hheEEEeccCcc
Confidence            999999999999999999999999999999997 5578999999999987776 689999988876

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=3.3e-41  Score=312.55  Aligned_cols=205  Identities=25%  Similarity=0.329  Sum_probs=156.8

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      ...+.|+++|+++. .   +.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.         
T Consensus        35 ~~~~~l~i~nls~~-~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl--~~p~~G~I~i~g~---------   99 (282)
T cd03291          35 SDDNNLFFSNLCLV-G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE--LEPSEGKIKHSGR---------   99 (282)
T ss_pred             CCCCeEEEEEEEEe-c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCE---------
Confidence            45668999999985 2   4699999999999999999999999999999999998  6899999999882         


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH--HhHHHHHHhcCCccc-cccccCCCCCChHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY--AYLYPKLERLSMKTD-FLNRNVNEGFSGGER  229 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~-~~~~~~~~~LSgGqr  229 (325)
                           ++|++|++.+++. ++.+++......     .  .....+..  ..+.+.++.+....+ ..++.+. .||||||
T Consensus       100 -----i~yv~q~~~l~~~-tv~enl~~~~~~-----~--~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~-~LSgGq~  165 (282)
T cd03291         100 -----ISFSSQFSWIMPG-TIKENIIFGVSY-----D--EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI-TLSGGQR  165 (282)
T ss_pred             -----EEEEeCccccccc-CHHHHhhccccc-----C--HHHHHHHHHHhCCHHHHHhccccccceecCCCC-cCCHHHH
Confidence                 7788999887764 777776542110     0  00000000  012222333322111 1222233 5999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      ||++|||||+.+|++|||||||+|||+.+++.+++.+ .++. ++.|||++|||++.+. . ||++++|++|++++.|++
T Consensus       166 qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~-~-~d~i~~l~~G~i~~~g~~  242 (282)
T cd03291         166 ARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-K-ADKILILHEGSSYFYGTF  242 (282)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHH-h-CCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999865 5554 4689999999999875 4 799999999999999886


Q ss_pred             c
Q 020520          309 S  309 (325)
Q Consensus       309 ~  309 (325)
                      +
T Consensus       243 ~  243 (282)
T cd03291         243 S  243 (282)
T ss_pred             H
Confidence            5

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=2.1e-41  Score=341.32  Aligned_cols=212  Identities=23%  Similarity=0.330  Sum_probs=170.1

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+++++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+  .+|++|+|.+++.            
T Consensus         3 ~~i~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~--~~p~~G~i~~~~~------------   67 (552)
T TIGR03719         3 YIYTMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--DKEFNGEARPAPG------------   67 (552)
T ss_pred             EEEEEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCC------------
Confidence            48999999999962 35799999999999999999999999999999999998  6799999998751            


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHH-Hh-----h----hcCCCCCCh-------------------HHHHHhHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNA-RR-----R----KLGQPEIGP-------------------IEFYAYLYPKL  206 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~-~~-----~----~~~~~~~~~-------------------~~~~~~~~~~l  206 (325)
                      ..++|++|++.+++.+|+.+++...... ..     .    .........                   .....++.+++
T Consensus        68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  147 (552)
T TIGR03719        68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM  147 (552)
T ss_pred             CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence            2488999999888888999988653211 00     0    001100000                   00123455677


Q ss_pred             HhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       207 ~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      +.+++. . .++.+. .|||||||||+|||||+.+|++|||||||++||+.+++++.+.|+++.   .|||+||||++++
T Consensus       148 ~~~~l~-~-~~~~~~-~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tvIiisHd~~~~  221 (552)
T TIGR03719       148 DALRCP-P-WDADVT-KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTHDRYFL  221 (552)
T ss_pred             hhCCCC-c-ccCchh-hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeEEEEeCCHHHH
Confidence            788874 2 466666 499999999999999999999999999999999999999999999873   4999999999999


Q ss_pred             hhhCCcEEEEEeCCEEE-EEcCcc
Q 020520          287 EFIKPTFIHIMEDGRII-KTGDAS  309 (325)
Q Consensus       287 ~~~~~d~i~vl~~G~iv-~~g~~~  309 (325)
                      ..+ ||++++|++|+++ ..|+.+
T Consensus       222 ~~~-~d~v~~l~~g~i~~~~g~~~  244 (552)
T TIGR03719       222 DNV-AGWILELDRGRGIPWEGNYS  244 (552)
T ss_pred             Hhh-cCeEEEEECCEEEEecCCHH
Confidence            987 6999999999976 667665

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=2.5e-41  Score=319.66  Aligned_cols=186  Identities=23%  Similarity=0.396  Sum_probs=158.2

Q ss_pred             EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcC
Q 020520          110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG  189 (325)
Q Consensus       110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (325)
                      |+||||||||||+|+|+|+  ++|++|+|.++|+++...+..   +..++|+||++.+|+.+++.+++.+.....    +
T Consensus         1 l~G~nGsGKSTLl~~iaGl--~~p~~G~I~i~g~~i~~~~~~---~~~i~~v~q~~~l~~~~tv~enl~~~~~~~----~   71 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGF--EQPDSGSIMLDGEDVTNVPPH---LRHINMVFQSYALFPHMTVEENVAFGLKMR----K   71 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCC--CCCCceEEEECCEECCCCCHH---HCCEEEEecCccccCCCcHHHHHHHHHhhc----C
Confidence            6899999999999999998  689999999999998765542   235889999999999999999987653211    1


Q ss_pred             CCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc
Q 020520          190 QPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL  269 (325)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l  269 (325)
                         ....+...++.++++.+++. ++.++.+.+ |||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++
T Consensus        72 ---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l  146 (325)
T TIGR01187        72 ---VPRAEIKPRVLEALRLVQLE-EFADRKPHQ-LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI  146 (325)
T ss_pred             ---CCHHHHHHHHHHHHHHcCCc-chhcCChhh-CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence               11233345677889999996 567777765 9999999999999999999999999999999999999999999998


Q ss_pred             cCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          270 LTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       270 ~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      .++ |.|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus       147 ~~~~g~tiiivTHd~~e~~~~-~d~i~vl~~G~i~~~g~~~~  187 (325)
T TIGR01187       147 QEQLGITFVFVTHDQEEAMTM-SDRIAIMRKGKIAQIGTPEE  187 (325)
T ss_pred             HHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            755 88999999999998887 69999999999999998753

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.4e-41  Score=287.52  Aligned_cols=225  Identities=24%  Similarity=0.362  Sum_probs=185.4

Q ss_pred             CCcEEEEEEEEEECC-------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020520           75 QPLLQVTGLTAVIAE-------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE  147 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~-------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~  147 (325)
                      .+.++++|+++.|..       ....+++.|||++++|+.+||+|.||||||||.|+|+|+  .+|++|+|.+||+.+..
T Consensus         2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm--i~PTsG~il~n~~~L~~   79 (267)
T COG4167           2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGEILINDHPLHF   79 (267)
T ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc--cCCCCceEEECCccccc
Confidence            357899999998842       224589999999999999999999999999999999998  78999999999998866


Q ss_pred             CCHHHHhhccEEEeccCCcc--CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020520          148 MEPEERSLAGLFMSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS  225 (325)
Q Consensus       148 ~~~~~~~~~~i~~~~Q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS  225 (325)
                      .+...|. ..|-++||+|..  .|.+..-..+......      ..+.+..+...++.+.+..+|+-++..+-.+.. ||
T Consensus        80 ~Dy~~R~-k~IRMiFQDpnts~NPRl~iGqiLd~PL~l------~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~-la  151 (267)
T COG4167          80 GDYSFRS-KRIRMIFQDPNTSLNPRLRIGQILDFPLRL------NTDLEPEQRRKQIFETLRMVGLLPDHANYYPHM-LA  151 (267)
T ss_pred             cchHhhh-hheeeeecCCccccChhhhhhhHhcchhhh------cccCChHHHHHHHHHHHHHhccCccccccchhh-cC
Confidence            5444444 357789999863  2333333322222211      123345566678899999999988877777764 99


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      -||||||++||||+.+|+|+|.||..++||...+.++.+++.++.++ |.+.|+|+.++..+..+ +|.|+||+.|++++
T Consensus       152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi-~D~viVM~EG~vvE  230 (267)
T COG4167         152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHI-SDQVLVMHEGEVVE  230 (267)
T ss_pred             chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhh-cccEEEEecCceee
Confidence            99999999999999999999999999999999999999999999855 99999999999999998 69999999999999


Q ss_pred             EcCccH
Q 020520          305 TGDASI  310 (325)
Q Consensus       305 ~g~~~~  310 (325)
                      .|.+..
T Consensus       231 ~G~t~~  236 (267)
T COG4167         231 RGSTAD  236 (267)
T ss_pred             cCChhh
Confidence            998653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-41  Score=342.84  Aligned_cols=203  Identities=26%  Similarity=0.373  Sum_probs=165.6

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++||++.|++  +.+|+|+||+|.+|+++||+||||||||||+|+|+|+  .+|++|+|.+++.          
T Consensus       309 ~~~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~----------  374 (638)
T PRK10636        309 PNPLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE--LAPVSGEIGLAKG----------  374 (638)
T ss_pred             CCceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCC----------
Confidence            3568999999999963  6799999999999999999999999999999999998  6799999999741          


Q ss_pred             hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                        ..++|++|+..  +.+..++.+++..        .. .    ......+.++++.+++..+..++++.. ||||||||
T Consensus       375 --~~igy~~Q~~~~~l~~~~~~~~~~~~--------~~-~----~~~~~~~~~~L~~~~l~~~~~~~~~~~-LSgGekqR  438 (638)
T PRK10636        375 --IKLGYFAQHQLEFLRADESPLQHLAR--------LA-P----QELEQKLRDYLGGFGFQGDKVTEETRR-FSGGEKAR  438 (638)
T ss_pred             --EEEEEecCcchhhCCccchHHHHHHH--------hC-c----hhhHHHHHHHHHHcCCChhHhcCchhh-CCHHHHHH
Confidence              14788899742  2333344433211        00 0    111245677899999854456777765 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCccH
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDASI  310 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~~~  310 (325)
                      |+|||+|+.+|++|||||||+|||+.+++.+.++|.++  .| |||+||||++++..+ ||++++|++|+++ +.|+.+.
T Consensus       439 l~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~  514 (638)
T PRK10636        439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRST-TDDLYLVHDGKVEPFDGDLED  514 (638)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHh-CCEEEEEECCEEEEcCCCHHH
Confidence            99999999999999999999999999999999999998  34 999999999999887 6999999999997 6777653

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-42  Score=307.29  Aligned_cols=197  Identities=20%  Similarity=0.300  Sum_probs=168.6

Q ss_pred             eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH---HhhccEEEeccCCccCCCcc
Q 020520           96 KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE---RSLAGLFMSFQSPVEIPGVN  172 (325)
Q Consensus        96 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~---~~~~~i~~~~Q~~~~~~~~~  172 (325)
                      =+++|+.+.-.++||.|+||||||||+|+|+|+  .+|++|.|.+||.-+.+.....   ..+..++||||+..+||.++
T Consensus        15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL--~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t   92 (352)
T COG4148          15 LDANFTLPARGITALFGPSGSGKTSLINMIAGL--TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT   92 (352)
T ss_pred             EEEeccCCCCceEEEecCCCCChhhHHHHHhcc--CCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence            368999988679999999999999999999998  7899999999998764432110   11234899999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc
Q 020520          173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS  252 (325)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts  252 (325)
                      +..|+.++....             ....+..+.+.+|+. +++++.+.. |||||||||+|+|||+..|++|+||||.|
T Consensus        93 VrgNL~YG~~~~-------------~~~~fd~iv~lLGI~-hLL~R~P~~-LSGGEkQRVAIGRALLt~P~LLLmDEPLa  157 (352)
T COG4148          93 VRGNLRYGMWKS-------------MRAQFDQLVALLGIE-HLLDRYPGT-LSGGEKQRVAIGRALLTAPELLLMDEPLA  157 (352)
T ss_pred             Eecchhhhhccc-------------chHhHHHHHHHhCcH-HHHhhCCCc-cCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence            999887654211             123456678889996 789999875 99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          253 GLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       253 gLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +||...+++++-+|.++.++ ...|++|||.++++... ||+|++|++|++.+.|+.+.
T Consensus       158 SLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RL-Ad~vV~le~GkV~A~g~~e~  215 (352)
T COG4148         158 SLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRL-ADRVVVLENGKVKASGPLEE  215 (352)
T ss_pred             hcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhh-hheEEEecCCeEEecCcHHH
Confidence            99999999999999999876 78999999999999998 79999999999999998653

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=1.9e-41  Score=310.05  Aligned_cols=205  Identities=24%  Similarity=0.306  Sum_probs=160.1

Q ss_pred             EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE-----------ECCEeCCCCC
Q 020520           81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV-----------FKGENLLEME  149 (325)
Q Consensus        81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~-----------~~g~~i~~~~  149 (325)
                      .||+++|+. .+.+|+|+|+ +++||+++|+||||||||||+|+|+|+  ++|++|+|.           ++|+++....
T Consensus         4 ~~~~~~y~~-~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~   79 (255)
T cd03236           4 DEPVHRYGP-NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGK--LKPNLGKFDDPPDWDEILDEFRGSELQNYF   79 (255)
T ss_pred             cCcceeecC-cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEeeccccchhhhhccCchhhhhh
Confidence            478999964 2469999995 999999999999999999999999998  789999996           7788775432


Q ss_pred             HHHHh-hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          150 PEERS-LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       150 ~~~~~-~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      ...++ ...+++++|+...++. +..+++.....            .......+.++++.+++. +..++.+. .|||||
T Consensus        80 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~------------~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LS~G~  144 (255)
T cd03236          80 TKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK------------KKDERGKLDELVDQLELR-HVLDRNID-QLSGGE  144 (255)
T ss_pred             HHhhhcccceeeecchhccCch-HHHHHHHHHhc------------hhHHHHHHHHHHHHcCCc-hhhcCChh-hCCHHH
Confidence            22221 2346777888766653 33333322110            111224567788999986 45666665 499999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      |||++|||||+.+|+++||||||++||+.+++.+.+.|++++++++|||++|||++++..+ ||++++| +|++.+.|
T Consensus       145 ~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~-ad~i~~l-~~~~~~~~  220 (255)
T cd03236         145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYL-SDYIHCL-YGEPGAYG  220 (255)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh-CCEEEEE-CCCCCcce
Confidence            9999999999999999999999999999999999999999977788999999999999877 6999998 46666543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=3.7e-41  Score=306.70  Aligned_cols=188  Identities=23%  Similarity=0.273  Sum_probs=152.1

Q ss_pred             EEECCCcccceeeeEEEEe-----CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020520           85 AVIAESKQEILKGVNLLVN-----EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF  159 (325)
Q Consensus        85 ~~y~~~~~~iL~~vsl~i~-----~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~  159 (325)
                      |+|++. ...+++++|++.     +||+++|+||||||||||+++|+|+  .+|++|+|.++|.             .++
T Consensus         1 ~~y~~~-~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~--~~p~~G~i~~~g~-------------~i~   64 (246)
T cd03237           1 YTYPTM-KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--LKPDEGDIEIELD-------------TVS   64 (246)
T ss_pred             CCCccc-ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCc-------------eEE
Confidence            346543 347788888886     7999999999999999999999998  6799999999984             367


Q ss_pred             EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH
Q 020520          160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV  239 (325)
Q Consensus       160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~  239 (325)
                      +++|++..+...++.+++......    ...    .   .....++++.+++. +..++.+.+ |||||||||+|||||+
T Consensus        65 ~~~q~~~~~~~~tv~e~l~~~~~~----~~~----~---~~~~~~~l~~l~l~-~~~~~~~~~-LSgGe~qrv~iaraL~  131 (246)
T cd03237          65 YKPQYIKADYEGTVRDLLSSITKD----FYT----H---PYFKTEIAKPLQIE-QILDREVPE-LSGGELQRVAIAACLS  131 (246)
T ss_pred             EecccccCCCCCCHHHHHHHHhhh----ccc----c---HHHHHHHHHHcCCH-HHhhCChhh-CCHHHHHHHHHHHHHh
Confidence            889998766667888876543210    000    0   11245678888885 566777764 9999999999999999


Q ss_pred             hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      .+|+++||||||++||+.++..+.++|++++++ ++|||+||||++++..+ ||++++|+++..
T Consensus       132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~-~d~i~~l~~~~~  194 (246)
T cd03237         132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL-ADRLIVFEGEPS  194 (246)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEcCCCe
Confidence            999999999999999999999999999998754 78999999999999887 699999976443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=8.9e-41  Score=337.62  Aligned_cols=200  Identities=30%  Similarity=0.375  Sum_probs=169.6

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++++++|++++|++   ..|+++||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++   +        
T Consensus       337 ~~~~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl--~~p~~G~I~~~---~--------  400 (590)
T PRK13409        337 RETLVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV--LKPDEGEVDPE---L--------  400 (590)
T ss_pred             CceEEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEEe---e--------
Confidence            3568999999999963   359999999999999999999999999999999998  67999999985   1        


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                         .++|++|++..++..++.+++.....    ...     ..   ..+.++++.+++. +..++.+.+ |||||||||+
T Consensus       401 ---~i~y~~Q~~~~~~~~tv~e~l~~~~~----~~~-----~~---~~~~~~L~~l~l~-~~~~~~~~~-LSGGe~QRva  463 (590)
T PRK13409        401 ---KISYKPQYIKPDYDGTVEDLLRSITD----DLG-----SS---YYKSEIIKPLQLE-RLLDKNVKD-LSGGELQRVA  463 (590)
T ss_pred             ---eEEEecccccCCCCCcHHHHHHHHhh----hcC-----hH---HHHHHHHHHCCCH-HHHhCCccc-CCHHHHHHHH
Confidence               37889999887778899888764311    111     11   1346778999996 667888875 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||||+.+|++|||||||+|||+.++..+.++|++++++ |.|||+||||++++..+ ||++++|+ |++...|..
T Consensus       464 iAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~-aDrvivl~-~~~~~~g~~  537 (590)
T PRK13409        464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI-SDRLMVFE-GEPGKHGHA  537 (590)
T ss_pred             HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEc-Ccceeeeec
Confidence            999999999999999999999999999999999999764 88999999999999887 69999996 587776654

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4e-41  Score=291.27  Aligned_cols=225  Identities=22%  Similarity=0.333  Sum_probs=182.4

Q ss_pred             cEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           77 LLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      |+++.|+++.|..+   .+++|+++|++|++|+++.|+|.||||||||+++|+|-  ..|++|+|.++|.++..++...|
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~--l~~t~G~I~Idg~dVtk~~~~~R   78 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD--LKPTSGQILIDGVDVTKKSVAKR   78 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc--cccCCceEEECceecccCCHHHH
Confidence            46678888877532   36799999999999999999999999999999999996  67999999999999999987766


Q ss_pred             hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHH
Q 020520          154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERK  230 (325)
Q Consensus       154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQ  230 (325)
                      .. .++-|||+|.  .++.+|..||+..+... ....+....-.....+...+.+..+++.- +.++.+++- |||||||
T Consensus        79 A~-~larVfQdp~~gt~~~lTieENl~la~~R-g~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-LSGGQRQ  155 (263)
T COG1101          79 AN-LLARVFQDPLAGTAPELTIEENLALAESR-GKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGGQRQ  155 (263)
T ss_pred             hh-HHHHHhcchhhCCcccccHHHHHHHHHhc-CcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-ccchHHH
Confidence            54 3567899985  57889999998776432 11222221112233344555677766642 345666664 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      -+++++|.++.|+||+|||-|++|||.+.+.+++.-.++.++ +.|.+||||+++.+-.+ -+|.++|++|+|+.+-.
T Consensus       156 alsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~y-G~RlImLh~G~IvlDv~  232 (263)
T COG1101         156 ALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDY-GNRLIMLHSGKIVLDVT  232 (263)
T ss_pred             HHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhh-CCeEEEEeCCeEEEEcc
Confidence            999999999999999999999999999999999999998765 67999999999999887 69999999999998744

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1.8e-40  Score=334.61  Aligned_cols=204  Identities=22%  Similarity=0.336  Sum_probs=167.2

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.+++ +          
T Consensus       320 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~G~i~~~~-~----------  384 (552)
T TIGR03719       320 DKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ--EQPDSGTIKIGE-T----------  384 (552)
T ss_pred             CeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCeEEEECC-c----------
Confidence            568999999999964  5799999999999999999999999999999999998  679999999954 2          


Q ss_pred             hccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ..++|++|++ .+++.+++.+++......    .+..   ..+  ....++++.+++.....++.+.+ |||||||||+
T Consensus       385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~----~~~~---~~~--~~~~~~l~~~~l~~~~~~~~~~~-LSgGe~qrv~  453 (552)
T TIGR03719       385 -VKLAYVDQSRDALDPNKTVWEEISGGLDI----IQLG---KRE--VPSRAYVGRFNFKGSDQQKKVGQ-LSGGERNRVH  453 (552)
T ss_pred             -eEEEEEeCCccccCCCCcHHHHHHhhccc----cccC---cch--HHHHHHHHhCCCChhHhcCchhh-CCHHHHHHHH
Confidence             1478999986 367778998887654211    0110   011  12446788999853345677765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC-CEEE-EEcCc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED-GRII-KTGDA  308 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~-G~iv-~~g~~  308 (325)
                      |||||+.+|++|||||||+|||+.+++.+.++|+++.  + |||+||||++++..+ ||++++|++ |+++ ..|+.
T Consensus       454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~-~d~i~~l~~~~~~~~~~g~~  526 (552)
T TIGR03719       454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRWFLDRI-ATHILAFEGDSHVEWFEGNY  526 (552)
T ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHh-CCEEEEEECCCeEEEeCCCH
Confidence            9999999999999999999999999999999999983  3 899999999999887 699999986 5776 44554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=1.5e-40  Score=279.02  Aligned_cols=144  Identities=29%  Similarity=0.515  Sum_probs=130.8

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      ++++|++++|++  ..+++++||++++||+++|+|+||||||||+++|+|+  ++|++|+|.++|+            ..
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~~~------------~~   64 (144)
T cd03221           1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE--LEPDEGIVTWGST------------VK   64 (144)
T ss_pred             CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCceEEEECCe------------EE
Confidence            478999999964  4799999999999999999999999999999999998  6799999999984            13


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|++|                                                            ||+||+||++||||
T Consensus        65 i~~~~~------------------------------------------------------------lS~G~~~rv~lara   84 (144)
T cd03221          65 IGYFEQ------------------------------------------------------------LSGGEKMRLALAKL   84 (144)
T ss_pred             EEEEcc------------------------------------------------------------CCHHHHHHHHHHHH
Confidence            555544                                                            89999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      |+.+|+++||||||++||+.++..+.+.|+++   +.|||++||+++++..+ +|++++|++|+
T Consensus        85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~-~d~v~~l~~g~  144 (144)
T cd03221          85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQV-ATKIIELEDGK  144 (144)
T ss_pred             HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHh-CCEEEEEeCCC
Confidence            99999999999999999999999999999987   36999999999999877 69999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.4e-40  Score=335.42  Aligned_cols=205  Identities=23%  Similarity=0.331  Sum_probs=168.0

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||++.|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+  .+|++|+|.+++ +          
T Consensus       322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~p~~G~i~~~~-~----------  386 (556)
T PRK11819        322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ--EQPDSGTIKIGE-T----------  386 (556)
T ss_pred             CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECC-c----------
Confidence            468999999999964  5799999999999999999999999999999999998  679999999954 2          


Q ss_pred             hccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       ..++|++|++ .+++.+++.+++......    ....   ..+  .....+++.+++.....++.+.+ |||||||||+
T Consensus       387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~----~~~~---~~~--~~~~~~l~~~~l~~~~~~~~~~~-LSgG~~qrv~  455 (556)
T PRK11819        387 -VKLAYVDQSRDALDPNKTVWEEISGGLDI----IKVG---NRE--IPSRAYVGRFNFKGGDQQKKVGV-LSGGERNRLH  455 (556)
T ss_pred             -eEEEEEeCchhhcCCCCCHHHHHHhhccc----cccc---ccH--HHHHHHHHhCCCChhHhcCchhh-CCHHHHHHHH
Confidence             1378999996 577778998887654211    0100   011  12345788999853345777765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC-CEEE-EEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED-GRII-KTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~-G~iv-~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.+++.+.+.|.++.  + |||+||||++++..+ ||++++|++ |++. ..|+.+
T Consensus       456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~-~d~i~~l~~~g~~~~~~g~~~  529 (556)
T PRK11819        456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRWFLDRI-ATHILAFEGDSQVEWFEGNFQ  529 (556)
T ss_pred             HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHh-CCEEEEEECCCeEEEecCCHH
Confidence            9999999999999999999999999999999999873  4 899999999999987 699999986 7876 456543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=340.11  Aligned_cols=209  Identities=27%  Similarity=0.372  Sum_probs=160.5

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++||+++|++  +.+|+|+||+|++|+++||+||||||||||+|+|+|+  ..|++|+|.++|..            
T Consensus         1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~--~~pd~G~I~~~~~~------------   64 (638)
T PRK10636          1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE--ISADGGSYTFPGNW------------   64 (638)
T ss_pred             CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCCC------------
Confidence            5899999999964  6799999999999999999999999999999999997  67999999998742            


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHH----H------------------HhhhcCCCCCChHHHHHhHHHHHHhcCCccc
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYN----A------------------RRRKLGQPEIGPIEFYAYLYPKLERLSMKTD  214 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~----~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  214 (325)
                      .+++++|++..+. .+..+++.....    .                  ......  .....+...++.++++.+|+..+
T Consensus        65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~lgl~~~  141 (638)
T PRK10636         65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLD--AIDAWTIRSRAASLLHGLGFSNE  141 (638)
T ss_pred             EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--hcCCcchHHHHHHHHHhCCCCch
Confidence            1455666432221 222222211000    0                  000000  00011223457788999999634


Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEE
Q 020520          215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI  294 (325)
Q Consensus       215 ~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i  294 (325)
                      ..++.+.. |||||||||+|||||+.+|+||||||||+|||+.++.++.++|+++   +.|||+||||++++..+ ||+|
T Consensus       142 ~~~~~~~~-LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~-~d~i  216 (638)
T PRK10636        142 QLERPVSD-FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPI-VDKI  216 (638)
T ss_pred             hhcCchhh-cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHh-cCEE
Confidence            56777765 9999999999999999999999999999999999999999999886   35999999999999987 6999


Q ss_pred             EEEeCCEEEE-EcCcc
Q 020520          295 HIMEDGRIIK-TGDAS  309 (325)
Q Consensus       295 ~vl~~G~iv~-~g~~~  309 (325)
                      ++|++|+++. .|+.+
T Consensus       217 ~~L~~G~i~~~~g~~~  232 (638)
T PRK10636        217 IHIEQQSLFEYTGNYS  232 (638)
T ss_pred             EEEeCCEEEEecCCHH
Confidence            9999999964 56544

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.8e-40  Score=339.30  Aligned_cols=205  Identities=23%  Similarity=0.344  Sum_probs=168.8

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++||+++|++  +++|+|+||+|.+|+++||+||||||||||+|+|+|+  .+|++|+|.+ |.++        
T Consensus       316 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--~~p~~G~i~~-~~~~--------  382 (635)
T PRK11147        316 GKIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ--LQADSGRIHC-GTKL--------  382 (635)
T ss_pred             CCceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEE-CCCc--------
Confidence            3568999999999964  5799999999999999999999999999999999998  6799999998 5321        


Q ss_pred             hhccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          154 SLAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       154 ~~~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                         .++|++|++ .+++.+++.+++......    ..   ...  ....+.++++.+++..+..++.+.. |||||||||
T Consensus       383 ---~i~y~~q~~~~l~~~~tv~e~l~~~~~~----~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGekqRl  449 (635)
T PRK11147        383 ---EVAYFDQHRAELDPEKTVMDNLAEGKQE----VM---VNG--RPRHVLGYLQDFLFHPKRAMTPVKA-LSGGERNRL  449 (635)
T ss_pred             ---EEEEEeCcccccCCCCCHHHHHHhhccc----cc---ccc--hHHHHHHHHHhcCCCHHHHhChhhh-CCHHHHHHH
Confidence               478889986 477788998887553210    00   000  1234667788898854456777765 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe-CCEEEEE-cCc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME-DGRIIKT-GDA  308 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~-~G~iv~~-g~~  308 (325)
                      +|||||+.+|++|||||||+|||+.+++.+.++|+++   +.|||+||||.+++..+ ||++++|+ +|++... |+.
T Consensus       450 ~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~-~d~i~~l~~~g~i~~~~g~y  523 (635)
T PRK11147        450 LLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNT-VTECWIFEGNGKIGRYVGGY  523 (635)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHh-cCEEEEEeCCCeEEEccCCH
Confidence            9999999999999999999999999999999999887   34999999999999887 69999998 8998754 443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3e-40  Score=360.45  Aligned_cols=231  Identities=24%  Similarity=0.296  Sum_probs=189.6

Q ss_pred             CcEEEEEEEEEEC--CCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC---CCccEEEECCEeCCCCCH
Q 020520           76 PLLQVTGLTAVIA--ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE---VTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        76 ~~l~~~~ls~~y~--~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~---p~~G~I~~~g~~i~~~~~  150 (325)
                      .+++++||++.|+  ++++.+|+|||++|++||++||+||||||||||+++|+|+  .+   |++|+|.++|+++..   
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~--~~~g~~~~G~I~i~G~~~~~---  832 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER--VTTGVITGGDRLVNGRPLDS---  832 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC--CCCCCcceeEEEECCEECCh---
Confidence            3589999999995  2246799999999999999999999999999999999997  33   688999999998742   


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC---CCChH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE---GFSGG  227 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---~LSgG  227 (325)
                      . . +..++|++|++.+++.+|+.+++......+   .+ ......+..+++.++++.+++. +..++.+++   +||||
T Consensus       833 ~-~-~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~---~~-~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgG  905 (1394)
T TIGR00956       833 S-F-QRSIGYVQQQDLHLPTSTVRESLRFSAYLR---QP-KSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVE  905 (1394)
T ss_pred             h-h-hcceeeecccccCCCCCCHHHHHHHHHHhC---CC-CCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHH
Confidence            1 2 234789999988888899999987654321   11 1123344456788899999996 566766652   59999


Q ss_pred             HHHHHHHHHHHHhCCC-EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH-hhhCCcEEEEEeCC-EEEE
Q 020520          228 ERKRNEILQLAVLGAD-LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL-EFIKPTFIHIMEDG-RIIK  304 (325)
Q Consensus       228 qrQRv~iAraL~~~p~-lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~-~~~~~d~i~vl~~G-~iv~  304 (325)
                      |||||+||+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|+++.. ... +|++++|++| ++++
T Consensus       906 qrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~-~D~vl~L~~GG~iv~  984 (1394)
T TIGR00956       906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEE-FDRLLLLQKGGQTVY  984 (1394)
T ss_pred             HhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHh-cCEEEEEcCCCEEEE
Confidence            9999999999999997 9999999999999999999999999987789999999999863 344 6999999997 9999


Q ss_pred             EcCcc-----HHHHHHhCCe
Q 020520          305 TGDAS-----IATVLEEGGY  319 (325)
Q Consensus       305 ~g~~~-----~~~~~~~~~~  319 (325)
                      .|++.     ..+.++..|+
T Consensus       985 ~G~~~~~~~~~~~yf~~~G~ 1004 (1394)
T TIGR00956       985 FGDLGENSHTIINYFEKHGA 1004 (1394)
T ss_pred             ECCcccccchHHHHHHhcCC
Confidence            99863     3566777775

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-40  Score=312.47  Aligned_cols=271  Identities=23%  Similarity=0.359  Sum_probs=201.8

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCC--CCCCC-C-CCCCcEEEEEEEEEECCCcccceeeeEEEEeC
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSS--SDGQD-E-KSQPLLQVTGLTAVIAESKQEILKGVNLLVNE  104 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~-~-~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~  104 (325)
                      ..+..|+-.++..|++...+....+..++....+....  +..+. . .....+.++|++|.|.. .+++|+++||++++
T Consensus       210 ~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~-~r~iL~~isf~i~~  288 (497)
T COG5265         210 FQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP-RRPILNGISFTIPL  288 (497)
T ss_pred             hhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccc-cchhhcCccccccC
Confidence            35566777777777776666655555444333322211  11111 1 12335889999999975 57899999999999


Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR  184 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~  184 (325)
                      |+.+|++|++|+||||++++|..+  |++++|.|.+||+++........++ .|+++||+..+|.+ +..      ++. 
T Consensus       289 g~tvAiVg~SG~gKsTI~rllfRF--yD~~sG~I~id~qdir~vtq~slR~-aIg~VPQDtvLFND-ti~------yni-  357 (497)
T COG5265         289 GKTVAIVGESGAGKSTILRLLFRF--YDVNSGSITIDGQDIRDVTQQSLRR-AIGIVPQDTVLFND-TIA------YNI-  357 (497)
T ss_pred             ccEEEEEeCCCCcHHHHHHHHHHH--hCCcCceEEEcchhHHHhHHHHHHH-HhCcCcccceehhh-hHH------HHH-
Confidence            999999999999999999999998  8899999999999998776555443 47899999988754 111      111 


Q ss_pred             hhhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCC---CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020520          185 RRKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDV  256 (325)
Q Consensus       185 ~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~---~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~  256 (325)
                        .++.+..+.++..+.     +.+.++.++-   ..+..+++   .|||||||||+|||+++.+|+||+|||.||+||.
T Consensus       358 --~ygr~~at~eev~aaa~~aqi~~fi~~lP~---gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt  432 (497)
T COG5265         358 --KYGRPDATAEEVGAAAEAAQIHDFIQSLPE---GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT  432 (497)
T ss_pred             --hccCccccHHHHHHHHHHhhhhHHHHhCch---hhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence              244555555554433     3334454443   33333332   4999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCeec
Q 020520          257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKA  321 (325)
Q Consensus       257 ~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~~  321 (325)
                      .++++|...|++.. .|.|-++|.|.+..+.  .+|.|+||++|+|++.|+.  .+++..+|+|+
T Consensus       433 ~te~~iq~~l~~~~-~~rttlviahrlsti~--~adeiivl~~g~i~erg~h--~~ll~~~g~ya  492 (497)
T COG5265         433 HTEQAIQAALREVS-AGRTTLVIAHRLSTII--DADEIIVLDNGRIVERGTH--EELLAAGGLYA  492 (497)
T ss_pred             hHHHHHHHHHHHHh-CCCeEEEEeehhhhcc--CCceEEEeeCCEEEecCcH--HHHHHcCChHH
Confidence            99999999999986 4678889999776654  4799999999999999964  57788888764

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=3.7e-40  Score=335.86  Aligned_cols=218  Identities=25%  Similarity=0.310  Sum_probs=178.8

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCCCCHHHHhhccEEEeccCCcc
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVE  167 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~  167 (325)
                      ++++|+|+|++|++||+++|+||||||||||+++|+|.  .++   .+|+|.++|.++..   ... +..++|++|++.+
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~--~~~~~~~~G~i~~~g~~~~~---~~~-~~~i~yv~Q~~~~  110 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR--SPKGVKGSGSVLLNGMPIDA---KEM-RAISAYVQQDDLF  110 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCcceeEEEECCEECCH---HHH-hhhceeecccccc
Confidence            46799999999999999999999999999999999997  344   37999999998752   222 2347899999999


Q ss_pred             CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC-----CCChHHHHHHHHHHHHHhCC
Q 020520          168 IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE-----GFSGGERKRNEILQLAVLGA  242 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~LSgGqrQRv~iAraL~~~p  242 (325)
                      ++.+|+.|++.+....+   . ......++...++.+.++.+++. +..++.++.     +|||||||||+|||+|+.+|
T Consensus       111 ~~~lTV~e~l~f~~~~~---~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p  185 (617)
T TIGR00955       111 IPTLTVREHLMFQAHLR---M-PRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLTDP  185 (617)
T ss_pred             CccCcHHHHHHHHHhcC---C-CCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence            99999999987654321   1 11223344556788899999996 456666652     59999999999999999999


Q ss_pred             CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh-HHhhhCCcEEEEEeCCEEEEEcCccH-HHHHHhCCee
Q 020520          243 DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR-LLEFIKPTFIHIMEDGRIIKTGDASI-ATVLEEGGYK  320 (325)
Q Consensus       243 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~-~~~~~~~d~i~vl~~G~iv~~g~~~~-~~~~~~~~~~  320 (325)
                      ++|+|||||+|||+.+...+++.|++++++|+|||+++|+++ .+... +|++++|++|++++.|+++. .+.+++.|+.
T Consensus       186 ~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~-~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~  264 (617)
T TIGR00955       186 PLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFEL-FDKIILMAEGRVAYLGSPDQAVPFFSDLGHP  264 (617)
T ss_pred             CEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHH-hceEEEeeCCeEEEECCHHHHHHHHHHcCCC
Confidence            999999999999999999999999999877899999999985 55555 69999999999999999864 3445555543

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=9.1e-40  Score=334.99  Aligned_cols=242  Identities=21%  Similarity=0.255  Sum_probs=182.1

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCC--------CCC-CC--------------CCCCCCCCcEEEEEEEE
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPL--------KSS-SD--------------GQDEKSQPLLQVTGLTA   85 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~~~-~~--------------~~~~~~~~~l~~~~ls~   85 (325)
                      ..|+..+......++....+..|+.++++.++...        ... ..              ........+++++||++
T Consensus       380 ~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~  459 (659)
T TIGR00954       380 ADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPL  459 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEE
Confidence            45666677777889999999999988876432110        000 00              00111235799999999


Q ss_pred             EECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCC
Q 020520           86 VIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP  165 (325)
Q Consensus        86 ~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~  165 (325)
                      .|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.+++            +..+++++|++
T Consensus       460 ~~~~-~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl--~~~~~G~i~~~~------------~~~i~~v~Q~~  524 (659)
T TIGR00954       460 VTPN-GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL--WPVYGGRLTKPA------------KGKLFYVPQRP  524 (659)
T ss_pred             ECCC-CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEeecC------------CCcEEEECCCC
Confidence            9964 35799999999999999999999999999999999998  788999998763            12488999999


Q ss_pred             ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccC--------CCCCChHHHHHHHHHHH
Q 020520          166 VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNV--------NEGFSGGERKRNEILQL  237 (325)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~~LSgGqrQRv~iAra  237 (325)
                      .+++. ++.+++........  .......    .+.+.++++.+++. ++.+++.        +..||||||||++||||
T Consensus       525 ~l~~~-tv~eni~~~~~~~~--~~~~~~~----~~~i~~~l~~~~l~-~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa  596 (659)
T TIGR00954       525 YMTLG-TLRDQIIYPDSSED--MKRRGLS----DKDLEQILDNVQLT-HILEREGGWSAVQDWMDVLSGGEKQRIAMARL  596 (659)
T ss_pred             CCCCc-CHHHHHhcCCChhh--hhccCCC----HHHHHHHHHHcCCH-HHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence            88876 88888765321110  0001111    12355667777774 3333321        13599999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      |+++|++|||||||++||+.+++.+.+.+++.   |.|+|+|||+++.+. . +|++++|+
T Consensus       597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~~-~-~d~il~l~  652 (659)
T TIGR00954       597 FYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLWK-Y-HEYLLYMD  652 (659)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHHH-h-CCEEEEEe
Confidence            99999999999999999999999999999873   789999999999875 3 69999996

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=6.6e-40  Score=292.38  Aligned_cols=189  Identities=21%  Similarity=0.248  Sum_probs=148.5

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE-ECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV-FKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~-~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      ++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|. ++|..+.              +.+.+.+++.+
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~~~sG~i~~~~~~~~~--------------~~~~~~l~~~l   64 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL--DAPDEGDFIGLRGDALP--------------LGANSFILPGL   64 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCCCEEEecCceec--------------cccccccCCcC
Confidence            379999999999999999999999999999999998  679999997 7765321              12445577788


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID  251 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt  251 (325)
                      ++.+++.......    +   ....+..   ..+.+.+++. ...++.+.. ||||||||++|||||+.+|+++||||||
T Consensus        65 tv~enl~~~~~~~----~---~~~~~~~---~~~~~~~~l~-~~~~~~~~~-lS~G~~qrv~la~al~~~p~llllDEP~  132 (213)
T PRK15177         65 TGEENARMMASLY----G---LDGDEFS---HFCYQLTQLE-QCYTDRVSE-YSVTMKTHLAFAINLLLPCRLYIADGKL  132 (213)
T ss_pred             cHHHHHHHHHHHc----C---CCHHHHH---HHHHHHhChh-HHhhchHhh-cCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence            9888886643211    1   1112211   1223445554 345666654 9999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020520          252 SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA  311 (325)
Q Consensus       252 sgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~  311 (325)
                      +++|+.+++.+.+.|.+..+ +.|+|++|||++.+..+ ||++++|++|++++.++.+..
T Consensus       133 ~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~~~~-~d~i~~l~~G~i~~~~~~~~~  190 (213)
T PRK15177        133 YTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLIKEH-CHAFGVLLHGKITMCEDLAQA  190 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHHHHh-cCeeEEEECCeEEEeCCHHHH
Confidence            99999999999998865433 35899999999998877 699999999999999887643

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.2e-39  Score=335.23  Aligned_cols=204  Identities=19%  Similarity=0.309  Sum_probs=162.1

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||++.|++ ++.+|+|+||+|++|++++|+||||||||||+|+|+|+  .+|++|+|.+++.           
T Consensus       506 ~~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl--l~p~~G~I~~~~~-----------  571 (718)
T PLN03073        506 PPIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE--LQPSSGTVFRSAK-----------  571 (718)
T ss_pred             CceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCceEEECCc-----------
Confidence            468999999999963 34699999999999999999999999999999999998  6799999998652           


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                       ..++|++|++..  .++..++...... .  ..  +...    ...+.++++.+++..+..++.+.. |||||||||+|
T Consensus       572 -~~igyv~Q~~~~--~l~~~~~~~~~~~-~--~~--~~~~----~~~i~~~L~~~gl~~~~~~~~~~~-LSgGqkqRvaL  638 (718)
T PLN03073        572 -VRMAVFSQHHVD--GLDLSSNPLLYMM-R--CF--PGVP----EQKLRAHLGSFGVTGNLALQPMYT-LSGGQKSRVAF  638 (718)
T ss_pred             -eeEEEEeccccc--cCCcchhHHHHHH-H--hc--CCCC----HHHHHHHHHHCCCChHHhcCCccc-cCHHHHHHHHH
Confidence             247888998632  2222222111110 0  01  1111    134667899999964456677764 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCcc
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDAS  309 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~~  309 (325)
                      ||||+.+|++|||||||+|||+.+++.+.+.|.++  ++ |||+||||++++..+ ||++++|++|+++ ..|+.+
T Consensus       639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~-~drv~~l~~G~i~~~~g~~~  710 (718)
T PLN03073        639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGS-VDELWVVSEGKVTPFHGTFH  710 (718)
T ss_pred             HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHh-CCEEEEEECCEEEEeCCCHH
Confidence            99999999999999999999999999999999876  34 999999999999887 6999999999998 567554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=8.1e-40  Score=283.19  Aligned_cols=153  Identities=25%  Similarity=0.327  Sum_probs=133.5

Q ss_pred             EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEE
Q 020520           81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFM  160 (325)
Q Consensus        81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~  160 (325)
                      .||+++|++  +.+++++ |+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|.+             +++
T Consensus         4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~-------------i~~   65 (177)
T cd03222           4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ--LIPNGDNDEWDGIT-------------PVY   65 (177)
T ss_pred             CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCcEEEECCEE-------------EEE
Confidence            589999964  6788884 99999999999999999999999999998  68999999999863             445


Q ss_pred             eccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHh
Q 020520          161 SFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL  240 (325)
Q Consensus       161 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~  240 (325)
                      ++|++                                                         .||||||||++|||||+.
T Consensus        66 ~~q~~---------------------------------------------------------~LSgGq~qrv~laral~~   88 (177)
T cd03222          66 KPQYI---------------------------------------------------------DLSGGELQRVAIAAALLR   88 (177)
T ss_pred             EcccC---------------------------------------------------------CCCHHHHHHHHHHHHHhc
Confidence            44422                                                         089999999999999999


Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC-cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE--cCcc
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPK-NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT--GDAS  309 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~--g~~~  309 (325)
                      +|+++||||||++||+.+++.+.+.|.++++++ .|||++|||++++..+ ||++++|+++-.+.+  |.+.
T Consensus        89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222          89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEcCCCccceeccCCc
Confidence            999999999999999999999999999987664 8999999999999877 699999988766644  5554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.1e-40  Score=294.62  Aligned_cols=205  Identities=25%  Similarity=0.313  Sum_probs=160.7

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcc
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN  172 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~  172 (325)
                      .+++|+||+|++|++++++|+|||||||++|+|+|+  ..|++|.|.++|.+.........+..++++ .|...+...+.
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl--l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~-gqk~ql~Wdlp  114 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL--LLPTSGKVRVNGKDPFRRREEYLRSIGLVM-GQKLQLWWDLP  114 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc--cccCCCeEEecCcCcchhHHHHHHHHHHHh-hhhheeeeech
Confidence            489999999999999999999999999999999998  679999999999875442222233322221 24333332222


Q ss_pred             hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc
Q 020520          173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS  252 (325)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts  252 (325)
                      ..+-+.....       ..++...++.++.....+.++++ .+++.++.. ||-|||.|+.||.||+++|+||+|||||-
T Consensus       115 ~~ds~~v~~~-------Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~-LSlGqRmraeLaaaLLh~p~VLfLDEpTv  185 (325)
T COG4586         115 ALDSLEVLKL-------IYEIPDDEFAERLDFLTEILDLE-GFLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDEPTV  185 (325)
T ss_pred             hhhhHHHHHH-------HHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhh-ccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence            2222111100       12234566777788888888886 466677764 99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          253 GLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       253 gLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||...+..|.+.|+++.++ +.||+++||++..+... |+||++|+.|+++.+|+.+.
T Consensus       186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~l-c~rv~~I~~Gqlv~dg~l~~  243 (325)
T COG4586         186 GLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATL-CDRVLLIDQGQLVFDGTLAQ  243 (325)
T ss_pred             CcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHh-hhheEEeeCCcEeecccHHH
Confidence            99999999999999999754 88999999999999998 69999999999999998654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.7e-39  Score=332.07  Aligned_cols=206  Identities=20%  Similarity=0.351  Sum_probs=155.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +.+|+|+||+|++|+++||+||||||||||+|+|+|+  .+|++|+|.++|..            
T Consensus         3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~--~~p~~G~I~~~~~~------------   66 (635)
T PRK11147          3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE--VLLDDGRIIYEQDL------------   66 (635)
T ss_pred             EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCeEEEeCCCC------------
Confidence            7999999999964  6799999999999999999999999999999999997  67999999998731            


Q ss_pred             cEEEeccCCccCCCcchHHHHH------------------------------HHHHHHhhhcCCCCCChHHHHHhHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLH------------------------------MAYNARRRKLGQPEIGPIEFYAYLYPKL  206 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (325)
                      .+++++|.+......++.+++.                              ...... ..+..  ....+...++.+++
T Consensus        67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~l  143 (635)
T PRK11147         67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQ-EQLDH--HNLWQLENRINEVL  143 (635)
T ss_pred             EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HHHHh--cCcccHHHHHHHHH
Confidence            0223333321111111222110                              000000 00000  00011234577889


Q ss_pred             HhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       207 ~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      +.+++.   .++.+.+ |||||||||+|||||+.+|+||||||||+|||+.+++++.++|+++.   .|||+||||++++
T Consensus       144 ~~lgl~---~~~~~~~-LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l  216 (635)
T PRK11147        144 AQLGLD---PDAALSS-LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFI  216 (635)
T ss_pred             HhCCCC---CCCchhh-cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHH
Confidence            999985   2566664 99999999999999999999999999999999999999999999883   4999999999999


Q ss_pred             hhhCCcEEEEEeCCEEEE-EcCcc
Q 020520          287 EFIKPTFIHIMEDGRIIK-TGDAS  309 (325)
Q Consensus       287 ~~~~~d~i~vl~~G~iv~-~g~~~  309 (325)
                      ..+ ||+|++|++|+++. .|+.+
T Consensus       217 ~~~-~d~i~~L~~G~i~~~~g~~~  239 (635)
T PRK11147        217 RNM-ATRIVDLDRGKLVSYPGNYD  239 (635)
T ss_pred             HHh-cCeEEEEECCEEEEecCCHH
Confidence            887 69999999999974 46653

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-40  Score=277.38  Aligned_cols=224  Identities=24%  Similarity=0.359  Sum_probs=173.2

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC-----EeCCCC
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG-----ENLLEM  148 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g-----~~i~~~  148 (325)
                      ..|.+++.++++.|+.  ....++|||++.+||+.+|+|+||||||||++||++-  +.|++|+|.+.-     .++..+
T Consensus         3 ~~PLL~V~~lsk~Yg~--~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r--l~p~~G~v~Y~~r~~~~~dl~~m   78 (258)
T COG4107           3 DKPLLSVSGLSKLYGP--GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVTYRMRDGQPRDLYTM   78 (258)
T ss_pred             CCcceeehhhhhhhCC--CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc--cCCCCCeEEEEcCCCCchhHhhh
Confidence            3578999999999975  5689999999999999999999999999999999996  689999999865     233344


Q ss_pred             CHHHHhh---ccEEEeccCCccCCCc--chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020520          149 EPEERSL---AGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG  223 (325)
Q Consensus       149 ~~~~~~~---~~i~~~~Q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  223 (325)
                      +..+++.   -..+++.|+|.-=-.+  +.-.|+..  ...  ..+...  --.+.+.+.++++++.++....+..+. .
T Consensus        79 sEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGE--Rlm--a~G~RH--YG~iR~~a~~WL~~VEI~~~RiDD~Pr-t  151 (258)
T COG4107          79 SEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGE--RLM--AIGARH--YGNIRAEAQDWLEEVEIDLDRIDDLPR-T  151 (258)
T ss_pred             chHHHHHHhhhccceeecCccccceeeeccCCccch--hHH--hhhhhh--hhhHHHHHHHHHHhcccCcccccCccc-c
Confidence            4444332   2467888998531111  11111100  000  000000  012334566789999997666666665 4


Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      +||||+||+.|||-|+..|+++++||||.|||...+.+++++++.+..+ +.++++||||+..+... ++|..+|++|++
T Consensus       152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLl-a~rlmvmk~g~v  230 (258)
T COG4107         152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL-ADRLMVMKQGQV  230 (258)
T ss_pred             cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHh-hhcceeecCCCE
Confidence            9999999999999999999999999999999999999999999999765 88999999999988877 799999999999


Q ss_pred             EEEcCcc
Q 020520          303 IKTGDAS  309 (325)
Q Consensus       303 v~~g~~~  309 (325)
                      ++.|-.+
T Consensus       231 ve~GLTD  237 (258)
T COG4107         231 VESGLTD  237 (258)
T ss_pred             ecccccc
Confidence            9998654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=2.8e-39  Score=356.10  Aligned_cols=253  Identities=21%  Similarity=0.239  Sum_probs=190.2

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCC-CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCC
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDE-KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGE  106 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge  106 (325)
                      +..|+..+......+..+..+.+|+.+.+..++............ .....++++|+++.|++..+++|+|+||+|++||
T Consensus       586 l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~  665 (1522)
T TIGR00957       586 LRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGA  665 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCC
Confidence            456677777778889999999999999886543321100000011 1123799999999997544679999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      +++|+||||||||||+++|+|+  ++|++|+|.++|              .++|++|+|.+++ .|+.+|+.++..    
T Consensus       666 ~v~IvG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g--------------~i~yv~Q~~~l~~-~Ti~eNI~~g~~----  724 (1522)
T TIGR00957       666 LVAVVGQVGCGKSSLLSALLAE--MDKVEGHVHMKG--------------SVAYVPQQAWIQN-DSLRENILFGKA----  724 (1522)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC--CccCCcEEEECC--------------EEEEEcCCccccC-CcHHHHhhcCCc----
Confidence            9999999999999999999998  789999999987              2789999998765 588888765421    


Q ss_pred             hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                            ...++..+.     +.+.++.+..+.+..-...+.+||||||||++||||++.+|+++||||||++||+.+++.
T Consensus       725 ------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~  798 (1522)
T TIGR00957       725 ------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH  798 (1522)
T ss_pred             ------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence                  011111111     112233332221111122234699999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc--CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          262 VAKAVNGLL--TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       262 i~~~L~~l~--~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +.+.+.+..  .+++|+|+|||+++.+..  +|+|++|++|++++.|+.+
T Consensus       799 i~~~l~~~~~~~~~~tvIlvTH~~~~l~~--~D~ii~l~~G~i~~~g~~~  846 (1522)
T TIGR00957       799 IFEHVIGPEGVLKNKTRILVTHGISYLPQ--VDVIIVMSGGKISEMGSYQ  846 (1522)
T ss_pred             HHHHHhhhhhhhcCCEEEEEeCChhhhhh--CCEEEEecCCeEEeeCCHH
Confidence            999997531  246899999999998865  6999999999999999764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.1e-39  Score=356.07  Aligned_cols=251  Identities=21%  Similarity=0.236  Sum_probs=188.2

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCC
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGE  106 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge  106 (325)
                      +..|+..+......+..+..+.+|+.+.+..++.......  ......+.++++|++|+|+.. ++++|+|+||+|++||
T Consensus       567 l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge  644 (1622)
T PLN03130        567 LRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGS  644 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCC
Confidence            3456667777788899999999999998864433211110  011123469999999999742 3579999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCc-cEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTE-GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR  185 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~-G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      .++|+||+|||||||+++|+|.  ++|++ |+|.+.|              .++|++|+|.+|.+ |+.+|+.++..   
T Consensus       645 ~vaIvG~sGSGKSTLl~lLlG~--~~~~~GG~I~l~~--------------~Iayv~Q~p~Lfng-TIreNI~fg~~---  704 (1622)
T PLN03130        645 LVAIVGSTGEGKTSLISAMLGE--LPPRSDASVVIRG--------------TVAYVPQVSWIFNA-TVRDNILFGSP---  704 (1622)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh--hccCCCceEEEcC--------------eEEEEcCccccCCC-CHHHHHhCCCc---
Confidence            9999999999999999999998  78899 8998643              38899999999875 88898865421   


Q ss_pred             hhcCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020520          186 RKLGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR  260 (325)
Q Consensus       186 ~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~  260 (325)
                             .++++..+     .+.+.++.+..+.+..-..-+.+|||||||||+||||++++|+|+|||||||+||+.+.+
T Consensus       705 -------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~  777 (1622)
T PLN03130        705 -------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR  777 (1622)
T ss_pred             -------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHH
Confidence                   11111111     122234444332222222223469999999999999999999999999999999999998


Q ss_pred             HHHH-HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          261 DVAK-AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       261 ~i~~-~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      .+.+ .+..+. +++|+|+|||++..+..  +|+|++|++|++++.|+.+.
T Consensus       778 ~I~~~~l~~~l-~~kTvIlVTH~l~~l~~--aD~Ii~L~~G~i~e~Gt~~e  825 (1622)
T PLN03130        778 QVFDKCIKDEL-RGKTRVLVTNQLHFLSQ--VDRIILVHEGMIKEEGTYEE  825 (1622)
T ss_pred             HHHHHHhhHHh-cCCEEEEEECCHhHHHh--CCEEEEEeCCEEEEeCCHHH
Confidence            8864 555543 46899999999988765  69999999999999998653

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=6.7e-39  Score=349.50  Aligned_cols=234  Identities=22%  Similarity=0.261  Sum_probs=187.2

Q ss_pred             cEEEEEEEEEECC-----------CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520           77 LLQVTGLTAVIAE-----------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus        77 ~l~~~~ls~~y~~-----------~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      .++++||++.++.           +.+.+|+|+|++|++|++++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            5899999998741           23469999999999999999999999999999999999732124789999999875


Q ss_pred             CCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC----
Q 020520          146 LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN----  221 (325)
Q Consensus       146 ~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----  221 (325)
                      ..   ... +..++|++|++.+++.+|+.+++.+....+   .. .....++..+.++++++.+++. +..++.++    
T Consensus       947 ~~---~~~-~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr---~~-~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~ 1017 (1470)
T PLN03140        947 KQ---ETF-ARISGYCEQNDIHSPQVTVRESLIYSAFLR---LP-KEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGV 1017 (1470)
T ss_pred             Ch---HHh-hhheEEEccccccCCCCcHHHHHHHHHHhC---CC-CCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCC
Confidence            32   122 234789999998999999999987653221   11 1122334445688899999996 45666653    


Q ss_pred             CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH-HhhhCCcEEEEEeC-
Q 020520          222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMED-  299 (325)
Q Consensus       222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-~~~~~~d~i~vl~~-  299 (325)
                      .+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++. +... +|++++|++ 
T Consensus      1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~-~D~vllL~~g 1096 (1470)
T PLN03140       1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRG 1096 (1470)
T ss_pred             CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHh-CCEEEEEcCC
Confidence            3599999999999999999999999999999999999999999999998788999999999984 5555 699999986 


Q ss_pred             CEEEEEcCc-----cHHHHHHhC-Cee
Q 020520          300 GRIIKTGDA-----SIATVLEEG-GYK  320 (325)
Q Consensus       300 G~iv~~g~~-----~~~~~~~~~-~~~  320 (325)
                      |++++.|+.     +..+.++.. |+.
T Consensus      1097 G~~v~~G~~~~~~~~~~~yF~~~~g~~ 1123 (1470)
T PLN03140       1097 GQVIYSGPLGRNSHKIIEYFEAIPGVP 1123 (1470)
T ss_pred             CEEEEECCcccccccHHHHHHhcCCCC
Confidence            899999985     345667773 543

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.4e-39  Score=354.95  Aligned_cols=251  Identities=18%  Similarity=0.225  Sum_probs=186.2

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCC
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGE  106 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge  106 (325)
                      +..|+..+......+..+..+.+|+.+++..++.......  ........++++|++|+|+.. ++++|+|+||+|++||
T Consensus       567 l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge  644 (1495)
T PLN03232        567 LRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS  644 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCC
Confidence            4456777777788899999999999998865433211110  011123469999999999742 3579999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      .++|+||+|||||||+++|+|+  ++|++|.+..    +         +..++|++|+|.+|.+ |..+|+.++..    
T Consensus       645 ~vaIvG~sGSGKSTLl~lLlG~--~~~~~G~i~~----~---------~~~Iayv~Q~p~Lf~g-TIreNI~fg~~----  704 (1495)
T PLN03232        645 LVAIVGGTGEGKTSLISAMLGE--LSHAETSSVV----I---------RGSVAYVPQVSWIFNA-TVRENILFGSD----  704 (1495)
T ss_pred             EEEEECCCCCcHHHHHHHHhCC--CcccCCCEEE----e---------cCcEEEEcCccccccc-cHHHHhhcCCc----
Confidence            9999999999999999999998  7888886631    1         1248899999999875 88888865421    


Q ss_pred             hcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          187 KLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                            .++++..+.     +.+.++.+..+.+..-..-+.+||||||||++||||++++|+|+|||||||+||+.+.+.
T Consensus       705 ------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~  778 (1495)
T PLN03232        705 ------FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQ  778 (1495)
T ss_pred             ------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence                  112222111     112233332221222222234699999999999999999999999999999999999998


Q ss_pred             HHHH-HHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          262 VAKA-VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       262 i~~~-L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +.+. +..+. +++|+|+|||+++.+..  +|+|++|++|++++.|+.+
T Consensus       779 I~~~~l~~~l-~~kT~IlvTH~~~~l~~--aD~Ii~L~~G~i~~~Gt~~  824 (1495)
T PLN03232        779 VFDSCMKDEL-KGKTRVLVTNQLHFLPL--MDRIILVSEGMIKEEGTFA  824 (1495)
T ss_pred             HHHHHhhhhh-cCCEEEEEECChhhHHh--CCEEEEEeCCEEEEecCHH
Confidence            8765 55443 56899999999988764  6999999999999999765

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.9e-39  Score=321.60  Aligned_cols=210  Identities=25%  Similarity=0.399  Sum_probs=168.7

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+|+++|+++.|+  ++++|+++||+|.+|+++||||+||||||||||+|+|.  ..|++|+|.+.+.            
T Consensus         2 ~~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~--~~~~~G~i~~~~~------------   65 (530)
T COG0488           2 SMITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE--LEPDSGEVTRPKG------------   65 (530)
T ss_pred             ceEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCC--CcCCCCeEeecCC------------
Confidence            4799999999995  47899999999999999999999999999999999997  6799999988652            


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhh----------cCCC-------------CCChHHHHHhHHHHHHhcCCc
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK----------LGQP-------------EIGPIEFYAYLYPKLERLSMK  212 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-------------~~~~~~~~~~~~~~l~~~~l~  212 (325)
                      ..++++.|++......++.+.+..........          ....             +....+...++..++..+|+.
T Consensus        66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~  145 (530)
T COG0488          66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP  145 (530)
T ss_pred             ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence            23788999998888778777665443211000          0000             000011224566778888886


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCc
Q 020520          213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT  292 (325)
Q Consensus       213 ~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d  292 (325)
                      ..  ++++.+ ||||||.||+||+||+.+|++|||||||++||.++..++.+.|+++.  | |||+||||..++..+ |+
T Consensus       146 ~~--~~~~~~-LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--g-tviiVSHDR~FLd~V-~t  218 (530)
T COG0488         146 DE--DRPVSS-LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--G-TVIVVSHDRYFLDNV-AT  218 (530)
T ss_pred             cc--cCchhh-cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--C-cEEEEeCCHHHHHHH-hh
Confidence            43  677764 99999999999999999999999999999999999999999999763  5 999999999999998 69


Q ss_pred             EEEEEeCCEEEEE-cCc
Q 020520          293 FIHIMEDGRIIKT-GDA  308 (325)
Q Consensus       293 ~i~vl~~G~iv~~-g~~  308 (325)
                      +|+-++.|++... |+.
T Consensus       219 ~I~~ld~g~l~~y~Gny  235 (530)
T COG0488         219 HILELDRGKLTPYKGNY  235 (530)
T ss_pred             heEEecCCceeEecCCH
Confidence            9999999988654 544

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=8.6e-39  Score=271.70  Aligned_cols=156  Identities=29%  Similarity=0.478  Sum_probs=135.7

Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF  159 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~  159 (325)
                      ++|+++.|++  +.+++++||+|++|++++|+|+||||||||+++|+|+  ++|++|+|+++|.++........ ...++
T Consensus         2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~--~~~~~G~i~~~~~~~~~~~~~~~-~~~i~   76 (157)
T cd00267           2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--LKPTSGEILIDGKDIAKLPLEEL-RRRIG   76 (157)
T ss_pred             eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEEcccCCHHHH-HhceE
Confidence            6899999964  4799999999999999999999999999999999998  67899999999987754322221 12244


Q ss_pred             EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH
Q 020520          160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV  239 (325)
Q Consensus       160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~  239 (325)
                      +++|                                                            |||||+||++||||++
T Consensus        77 ~~~q------------------------------------------------------------lS~G~~~r~~l~~~l~   96 (157)
T cd00267          77 YVPQ------------------------------------------------------------LSGGQRQRVALARALL   96 (157)
T ss_pred             EEee------------------------------------------------------------CCHHHHHHHHHHHHHh
Confidence            4433                                                            8999999999999999


Q ss_pred             hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      .+|+++||||||++||..++..+.+.|.++.+.+.|+|++||+++++..+ +|++++|++|+
T Consensus        97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l~~g~  157 (157)
T cd00267          97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVLKDGK  157 (157)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEeCcC
Confidence            99999999999999999999999999999876678999999999999886 69999998874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.1e-38  Score=275.96  Aligned_cols=158  Identities=22%  Similarity=0.281  Sum_probs=128.0

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG  170 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~  170 (325)
                      .+++|+|+||+|++|++++|+||||||||||+|++.+      ++|++.++|.. ...   .+  ..+++++|       
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~-~~~---~~--~~~~~~~q-------   67 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFL-PKF---SR--NKLIFIDQ-------   67 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcc-ccc---cc--ccEEEEhH-------
Confidence            4679999999999999999999999999999999853      58999998752 111   11  12444443       


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhC--CCEEEEe
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG--ADLAILD  248 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~--p~lLlLD  248 (325)
                                                      .+.++.+++....+++.+. .||||||||++|||||+.+  |++||||
T Consensus        68 --------------------------------~~~l~~~~L~~~~~~~~~~-~LSgGq~qrl~laral~~~~~p~llLlD  114 (176)
T cd03238          68 --------------------------------LQFLIDVGLGYLTLGQKLS-TLSGGELQRVKLASELFSEPPGTLFILD  114 (176)
T ss_pred             --------------------------------HHHHHHcCCCccccCCCcC-cCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence                                            1235666764323566665 4999999999999999999  9999999


Q ss_pred             CcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          249 EIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       249 EPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      |||++||+.+++.+.+.|+++.+.|.|||+|||+++++. . +|++++|++|+.
T Consensus       115 EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~-~d~i~~l~~g~~  166 (176)
T cd03238         115 EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-S-ADWIIDFGPGSG  166 (176)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEECCCCC
Confidence            999999999999999999998767899999999999874 4 799999976544

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.9e-38  Score=346.41  Aligned_cols=225  Identities=22%  Similarity=0.288  Sum_probs=176.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC--CCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD--YEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP  169 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~--~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~  169 (325)
                      +++|+|+|+++++||+++|+||||||||||+|+|+|+..  ..|++|+|.++|+++....  ...+..+++++|++.+++
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~--~~~r~~i~yv~Q~d~~~~  151 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK--KHYRGDVVYNAETDVHFP  151 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH--hhcCceeEEeccccccCC
Confidence            569999999999999999999999999999999999731  2478999999999875432  112235889999999999


Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCChHHHHHh-HHHHHHhcCCccccccccCC----CCCChHHHHHHHHHHHHHhCCCE
Q 020520          170 GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY-LYPKLERLSMKTDFLNRNVN----EGFSGGERKRNEILQLAVLGADL  244 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~----~~LSgGqrQRv~iAraL~~~p~l  244 (325)
                      .+|+.+++.+....+...........++..++ .+++++.+|+. +..++.++    .+|||||||||+||++|+.+|+|
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v  230 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI  230 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence            99999998775432210000001222332233 35578999996 45554432    35999999999999999999999


Q ss_pred             EEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCCh-hHHhhhCCcEEEEEeCCEEEEEcCccH-HHHHHhCCee
Q 020520          245 AILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYR-RLLEFIKPTFIHIMEDGRIIKTGDASI-ATVLEEGGYK  320 (325)
Q Consensus       245 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~-~~~~~~~~d~i~vl~~G~iv~~g~~~~-~~~~~~~~~~  320 (325)
                      |+|||||+|||+.++..+++.|++++++ |+|||+++|++ +.+... +|++++|++|++++.|+++. .+.+++.|+.
T Consensus       231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l-~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~  308 (1394)
T TIGR00956       231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYEL-FDKVIVLYEGYQIYFGPADKAKQYFEKMGFK  308 (1394)
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-hceEEEEeCCeEEEECCHHHHHHHHHHcCCC
Confidence            9999999999999999999999999864 89999999996 566666 69999999999999998864 4567777764

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.6e-38  Score=333.16  Aligned_cols=259  Identities=19%  Similarity=0.240  Sum_probs=200.2

Q ss_pred             hhhhhhhhccHHHHHHHhhccCCCCCCCCCC-CC--CCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCC
Q 020520           39 RSNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QD--EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNG  115 (325)
Q Consensus        39 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~--~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NG  115 (325)
                      .........+++|+.+..+.++++....... +.  =+....|+++|++.+|..+...+|+||||+|++||.+||||..|
T Consensus      1097 ~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1097 SSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred             HHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCC
Confidence            3456777888999998888666622221111 11  13456899999999998766789999999999999999999999


Q ss_pred             ccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCCh
Q 020520          116 SGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP  195 (325)
Q Consensus       116 sGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (325)
                      ||||||+++|.++  ..|.+|+|.+||.|+.++..+++|. .+..+||+|.+|.+ |++.|+...          .+.++
T Consensus      1177 aGKSSL~~aLFRl--~e~~~G~I~IDgvdI~~igL~dLRs-rlsIIPQdPvLFsG-TvR~NLDPf----------~e~sD 1242 (1381)
T KOG0054|consen 1177 AGKSSLILALFRL--VEPAEGEILIDGVDISKIGLHDLRS-RLSIIPQDPVLFSG-TVRFNLDPF----------DEYSD 1242 (1381)
T ss_pred             CCHHHHHHHHHHh--cCccCCeEEEcCeecccccHHHHHh-cCeeeCCCCceecC-ccccccCcc----------cccCH
Confidence            9999999999998  6789999999999999999887654 37788999999987 444443221          12233


Q ss_pred             HHHHHhH-----HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc
Q 020520          196 IEFYAYL-----YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL  270 (325)
Q Consensus       196 ~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~  270 (325)
                      ++.++.+     .+.++.++.+-+..-.+-|+++|-||||.++|||||+++.+||+|||+||++|+++-..|.+.|++--
T Consensus      1243 ~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F 1322 (1381)
T KOG0054|consen 1243 DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF 1322 (1381)
T ss_pred             HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh
Confidence            4444332     22333332221222233355799999999999999999999999999999999999999999999865


Q ss_pred             CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh
Q 020520          271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE  316 (325)
Q Consensus       271 ~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~  316 (325)
                      + ++|||.|.|+++.+..  +|||+||++|++++.|+|.  +++++
T Consensus      1323 ~-dcTVltIAHRl~TVmd--~DrVlVld~G~v~EfdsP~--~Ll~~ 1363 (1381)
T KOG0054|consen 1323 K-DCTVLTIAHRLNTVMD--SDRVLVLDAGRVVEFDSPA--ELLSD 1363 (1381)
T ss_pred             c-CCeEEEEeeccchhhh--cCeEEEeeCCeEeecCChH--HHHhC
Confidence            4 5799999999887765  6999999999999999986  44544

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.9e-37  Score=340.84  Aligned_cols=248  Identities=19%  Similarity=0.253  Sum_probs=187.2

Q ss_pred             hch-HhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC------------------
Q 020520           30 LPA-LPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES------------------   90 (325)
Q Consensus        30 ~~~-~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~------------------   90 (325)
                      .|+ ..+......+.++..+.+|+.+.+...+.....  .   ......++++|+++.|+..                  
T Consensus       349 ~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~--~---~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  423 (1490)
T TIGR01271       349 MTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE--Y---NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQP  423 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--c---cCCCCceEEecceEecCCccccccccccccccccccc
Confidence            354 367778888999999999999988654332111  0   0112247888888888421                  


Q ss_pred             --------------cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           91 --------------KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        91 --------------~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                                    .+++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|              
T Consensus       424 ~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~--~~~~~G~i~~~g--------------  487 (1490)
T TIGR01271       424 NGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE--LEPSEGKIKHSG--------------  487 (1490)
T ss_pred             cccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECC--------------
Confidence                          13589999999999999999999999999999999998  789999999987              


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH--HhHHHHHHhcCCcccc-ccccCCCCCChHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY--AYLYPKLERLSMKTDF-LNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~-~~~~~~~~LSgGqrQRv~  233 (325)
                      .++|++|+|.+++. |+.+|+.++......       ...+..  ..+.+.++.+...... .... +..|||||||||+
T Consensus       488 ~iayv~Q~~~l~~~-Ti~eNI~~g~~~~~~-------~~~~~~~~~~L~~~l~~l~~g~~t~vg~~-g~~LSgGqkqRi~  558 (1490)
T TIGR01271       488 RISFSPQTSWIMPG-TIKDNIIFGLSYDEY-------RYTSVIKACQLEEDIALFPEKDKTVLGEG-GITLSGGQRARIS  558 (1490)
T ss_pred             EEEEEeCCCccCCc-cHHHHHHhccccchH-------HHHHHHHHHhHHHHHHhccccccccccCc-CCCcCHHHHHHHH
Confidence            27899999998875 999998754211000       000111  1233445554433221 1222 3469999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH-HHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKA-VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||++.+|+++||||||++||+.+++.+++. +..+. +++|+|+|||+++.+..  ||+|++|++|++++.|+.+.
T Consensus       559 lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~--ad~ii~l~~g~i~~~g~~~~  633 (1490)
T TIGR01271       559 LARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKK--ADKILLLHEGVCYFYGTFSE  633 (1490)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHh--CCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999985 56664 47899999999998864  69999999999999998654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.1e-38  Score=322.51  Aligned_cols=195  Identities=26%  Similarity=0.339  Sum_probs=155.1

Q ss_pred             EEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE-----------ECCEeCCCCCH
Q 020520           82 GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV-----------FKGENLLEMEP  150 (325)
Q Consensus        82 ~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~-----------~~g~~i~~~~~  150 (325)
                      +++++|+. ...+|++++ .+++||++||+||||||||||+|+|+|+  ++|++|+|.           ++|+++..+..
T Consensus        78 ~~~~~yg~-~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~--l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~  153 (590)
T PRK13409         78 EPVHRYGV-NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGE--LIPNLGDYEEEPSWDEVLKRFRGTELQNYFK  153 (590)
T ss_pred             CceEEecC-CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence            48899974 346999999 9999999999999999999999999998  689999998           88988754321


Q ss_pred             HHH-hhccEEEeccCCccCCC---cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020520          151 EER-SLAGLFMSFQSPVEIPG---VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG  226 (325)
Q Consensus       151 ~~~-~~~~i~~~~Q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg  226 (325)
                      ... ....+++.+|....++.   .++.+++..                .+....+.++++.+++. +.+++.+.+ |||
T Consensus       154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~----------------~~~~~~~~~~l~~l~l~-~~~~~~~~~-LSg  215 (590)
T PRK13409        154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKK----------------VDERGKLDEVVERLGLE-NILDRDISE-LSG  215 (590)
T ss_pred             HHhccCcceeecccchhhhhhhhcchHHHHHHh----------------hhHHHHHHHHHHHcCCc-hhhcCChhh-CCH
Confidence            111 11234555554433222   155544321                01224567788999996 567888875 999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      ||||||+||+||+.+|++|||||||++||+.++.++.+.|+++++ |.|||+||||++++..+ +|++++|+++
T Consensus       216 Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~-~D~v~vl~~~  287 (590)
T PRK13409        216 GELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYL-ADNVHIAYGE  287 (590)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHh-CCEEEEEeCC
Confidence            999999999999999999999999999999999999999999987 89999999999999887 6999999763

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.6e-37  Score=319.48  Aligned_cols=226  Identities=16%  Similarity=0.200  Sum_probs=160.4

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEECCEeCCCC--CH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEM--EP  150 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~~g~~i~~~--~~  150 (325)
                      ...+|+++|++++|++  +.+|+|+||+|.+|+++||||+||||||||+|+|+|... ..|.+|+|.+.++.+...  +.
T Consensus       174 ~~~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~  251 (718)
T PLN03073        174 AIKDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTA  251 (718)
T ss_pred             CceeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCH
Confidence            4558999999999964  569999999999999999999999999999999999521 147889998765543211  11


Q ss_pred             H--------HH---hhccEEEeccCCccCCC-c------------chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHH
Q 020520          151 E--------ER---SLAGLFMSFQSPVEIPG-V------------NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL  206 (325)
Q Consensus       151 ~--------~~---~~~~i~~~~Q~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (325)
                      .        .+   ....+++++|++.+... .            ...+........ ...+...+  ......++.+++
T Consensus       252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~--~~~~~~r~~~~L  328 (718)
T PLN03073        252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEI-YKRLELID--AYTAEARAASIL  328 (718)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHH-HHHHHhcC--cchHHHHHHHHH
Confidence            0        00   01113344554432110 0            000000000000 00000000  112235567788


Q ss_pred             HhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       207 ~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      ..+|+..+..++.+.+ |||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++   +.|||+||||++++
T Consensus       329 ~~lgl~~~~~~~~~~~-LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l  404 (718)
T PLN03073        329 AGLSFTPEMQVKATKT-FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFL  404 (718)
T ss_pred             HHCCCChHHHhCchhh-CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHH
Confidence            9999864556677764 9999999999999999999999999999999999999999999987   57999999999999


Q ss_pred             hhhCCcEEEEEeCCEEE-EEcCcc
Q 020520          287 EFIKPTFIHIMEDGRII-KTGDAS  309 (325)
Q Consensus       287 ~~~~~d~i~vl~~G~iv-~~g~~~  309 (325)
                      ..+ ||+|++|++|+++ +.|+.+
T Consensus       405 ~~~-~d~i~~l~~g~i~~~~g~~~  427 (718)
T PLN03073        405 NTV-VTDILHLHGQKLVTYKGDYD  427 (718)
T ss_pred             HHh-CCEEEEEECCEEEEeCCCHH
Confidence            887 6999999999996 566543

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.3e-37  Score=311.67  Aligned_cols=235  Identities=23%  Similarity=0.273  Sum_probs=193.6

Q ss_pred             CcEEEEEEEEEECCC---cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-CCCccEEEECCEeCCCCCHH
Q 020520           76 PLLQVTGLTAVIAES---KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-EVTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~---~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~  151 (325)
                      ..+.++|+++...+.   .+++|+|||..+++||+.||+||+|||||||+++|+|.... ...+|+|.+||+....   +
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---~  100 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS---R  100 (613)
T ss_pred             ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch---h
Confidence            358889999887654   37899999999999999999999999999999999996321 2578999999965432   2


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC----CCCChH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN----EGFSGG  227 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG  227 (325)
                      .. +...+||.|+..+++.+||.|.+......+.   + .....++...+++++++.+|+. +..++.++    .++|||
T Consensus       101 ~~-~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrl---p-~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGG  174 (613)
T KOG0061|consen  101 SF-RKISGYVQQDDVLLPTLTVRETLRFSALLRL---P-SSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGG  174 (613)
T ss_pred             hh-hheeEEEcccccccccccHHHHHHHHHHhcC---C-CCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccc
Confidence            22 2347899999999999999999877654431   1 1234567778899999999997 66677665    259999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH-HhhhCCcEEEEEeCCEEEEEc
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||+||+||.-|+++|.||+|||||+|||..+..++++.|++++++|+|||++-|.+.. +-.. .|++++|.+|++++.|
T Consensus       175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~l-FD~l~lLs~G~~vy~G  253 (613)
T KOG0061|consen  175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFEL-FDKLLLLSEGEVVYSG  253 (613)
T ss_pred             hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHH-HhHhhhhcCCcEEEec
Confidence            9999999999999999999999999999999999999999999889999999999753 3333 4899999999999999


Q ss_pred             CccH-HHHHHhCCee
Q 020520          307 DASI-ATVLEEGGYK  320 (325)
Q Consensus       307 ~~~~-~~~~~~~~~~  320 (325)
                      ++.. .+.++..|+.
T Consensus       254 ~~~~~~~ff~~~G~~  268 (613)
T KOG0061|consen  254 SPRELLEFFSSLGFP  268 (613)
T ss_pred             CHHHHHHHHHhCCCC
Confidence            9864 4667777764

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=7e-37  Score=270.62  Aligned_cols=195  Identities=23%  Similarity=0.299  Sum_probs=163.5

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      ..+|+||||++++||.+||+|+||||||||+|+|+|.  ++|++|+|.++|+-..-+      ..+.++  |     +.+
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi--~~Pt~G~v~v~G~v~~li------~lg~Gf--~-----pel  104 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI--YKPTSGKVKVTGKVAPLI------ELGAGF--D-----PEL  104 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc--cCCCCceEEEcceEehhh------hcccCC--C-----ccc
Confidence            4699999999999999999999999999999999998  899999999999742111      122332  2     446


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID  251 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt  251 (325)
                      |..+|+.+....    .+   .+.++..++++++++.-.+. ++.+.++.. +|.||+-|+++|.|...+|++||+||-.
T Consensus       105 TGreNi~l~~~~----~G---~~~~ei~~~~~eIieFaELG-~fi~~Pvkt-YSSGM~aRLaFsia~~~~pdILllDEvl  175 (249)
T COG1134         105 TGRENIYLRGLI----LG---LTRKEIDEKVDEIIEFAELG-DFIDQPVKT-YSSGMYARLAFSVATHVEPDILLLDEVL  175 (249)
T ss_pred             chHHHHHHHHHH----hC---ccHHHHHHHHHHHHHHHHHH-HHhhCchhh-ccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence            777777553221    12   23556667778888877776 688888865 9999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020520          252 SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA  311 (325)
Q Consensus       252 sgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~  311 (325)
                      +-.|+.-++.-.+.+.++.+++.|||+||||++.+..+ ||++++|++|++...|+++..
T Consensus       176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~-Cd~~i~l~~G~i~~~G~~~~v  234 (249)
T COG1134         176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQY-CDRAIWLEHGQIRMEGSPEEV  234 (249)
T ss_pred             hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh-cCeeEEEeCCEEEEcCCHHHH
Confidence            99999999999999999977779999999999999998 699999999999999998753

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.6e-37  Score=253.92  Aligned_cols=204  Identities=22%  Similarity=0.240  Sum_probs=165.2

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-CCCccEEEECCEeCCCCCHHHHhh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-EVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++.++||+.+.++  .-.|.++||+|.+||++.|+||||||||||+..+.|.+.- -..+|++.++++++..++..+|  
T Consensus         2 ~l~l~nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR--   77 (213)
T COG4136           2 MLCLKNVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR--   77 (213)
T ss_pred             ceeeeeeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh--
Confidence            6889999987764  6789999999999999999999999999999999996311 1348999999999988876544  


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                       .+++.||++.+|+.+++.+|+.+.....        ......+..+..++++.++. .+.++.+. +||||||-||++-
T Consensus        78 -q~GiLFQD~lLFphlsVg~Nl~fAlp~~--------~KG~aRr~~a~aAL~~~gL~-g~f~~dP~-tlSGGQrARvaL~  146 (213)
T COG4136          78 -QIGILFQDALLFPHLSVGQNLLFALPAT--------LKGNARRNAANAALERSGLD-GAFHQDPA-TLSGGQRARVALL  146 (213)
T ss_pred             -heeeeecccccccccccccceEEecCcc--------cccHHHHhhHHHHHHHhccc-hhhhcChh-hcCcchHHHHHHH
Confidence             3778899999999999988876543221        11223345567789999996 56777776 4999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc-cCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL-LTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      |+|+.+|+.++||||+|.||..-+.++.+.+..- ...|...|+||||.+.+..  ..||+-|
T Consensus       147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpa--gsrVie~  207 (213)
T COG4136         147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA--GSRVIEM  207 (213)
T ss_pred             HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC--CCeeeee
Confidence            9999999999999999999999999998877554 4458888999999887762  3555433

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=7.2e-37  Score=333.62  Aligned_cols=221  Identities=21%  Similarity=0.273  Sum_probs=173.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC---ccEEEECCEeCCCCCHHHHhhccEEEeccCCccC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEI  168 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~  168 (325)
                      +.+|+|+|+.|++||+++|+||||||||||||+|+|+  .+|+   +|+|.++|+++.....    +..++|++|++.++
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~--l~~~~~~~G~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~  251 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK--LDPSLKVSGEITYNGYRLNEFVP----RKTSAYISQNDVHV  251 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC--CCCCCcceeEEEECCEechhhcc----cceeEEecccccCC
Confidence            4699999999999999999999999999999999997  5676   9999999998754321    23588999999999


Q ss_pred             CCcchHHHHHHHHHHHhhhcC--C-CCCChH----------H--------------HHHhHHHHHHhcCCccccc-----
Q 020520          169 PGVNNIDFLHMAYNARRRKLG--Q-PEIGPI----------E--------------FYAYLYPKLERLSMKTDFL-----  216 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~----------~--------------~~~~~~~~l~~~~l~~~~~-----  216 (325)
                      +.+|+.+++.+....+.....  . .+....          +              ....++.+++.+|+. +..     
T Consensus       252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~-~~~~t~vg  330 (1470)
T PLN03140        252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD-ICKDTIVG  330 (1470)
T ss_pred             CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc-cccCceeC
Confidence            999999998876432210000  0 000000          0              001245678899995 333     


Q ss_pred             cccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCCh-hHHhhhCCcEE
Q 020520          217 NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYR-RLLEFIKPTFI  294 (325)
Q Consensus       217 ~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~-~~~~~~~~d~i  294 (325)
                      ++.+. +|||||||||+||++|+.+|++|+|||||+|||+.+..++.+.|+++++ .|+|||+++|++ ..+..+ +|+|
T Consensus       331 ~~~~r-glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~l-fD~v  408 (1470)
T PLN03140        331 DEMIR-GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDL-FDDI  408 (1470)
T ss_pred             Ccccc-CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHH-hheE
Confidence            33333 5999999999999999999999999999999999999999999999975 488999999986 466666 6999


Q ss_pred             EEEeCCEEEEEcCccH-HHHHHhCCeec
Q 020520          295 HIMEDGRIIKTGDASI-ATVLEEGGYKA  321 (325)
Q Consensus       295 ~vl~~G~iv~~g~~~~-~~~~~~~~~~~  321 (325)
                      ++|++|++++.|+.+. .+.++..|+++
T Consensus       409 ilL~~G~ivy~G~~~~~~~yF~~lGf~c  436 (1470)
T PLN03140        409 ILLSEGQIVYQGPRDHILEFFESCGFKC  436 (1470)
T ss_pred             EEeeCceEEEeCCHHHHHHHHHHcCCCC
Confidence            9999999999999764 45677777653

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=320.56  Aligned_cols=231  Identities=22%  Similarity=0.290  Sum_probs=199.1

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ..+.++|+++.|+.... +++++||.|++||+.|++|+|||||||++++|.|.  .+|++|++.++|.++..........
T Consensus       563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~--~~~t~G~a~i~g~~i~~~~~~~~~~  639 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE--TKPTSGEALIKGHDITVSTDFQQVR  639 (885)
T ss_pred             ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCC--ccCCcceEEEecCccccccchhhhh
Confidence            57899999999975332 99999999999999999999999999999999997  7899999999999987655444445


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+||.||...+++.+|..|.+......+    +.   ...+..+.++..++.+++. +..++..+. +|||+|+|+++|
T Consensus       640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlr----G~---~~~di~~~v~~ll~~~~L~-~~~~~~~~~-ySgG~kRkLs~a  710 (885)
T KOG0059|consen  640 KQLGYCPQFDALWEELTGREHLEFYARLR----GL---PRSDIGSAIEKLLRLVGLG-PYANKQVRT-YSGGNKRRLSFA  710 (885)
T ss_pred             hhcccCCchhhhhhhccHHHHHHHHHHHc----CC---ChhHHHHHHHHHHHHcCCh-hhhccchhh-CCCcchhhHHHH
Confidence            56899999999999999999887764432    21   2334556678889999996 567888765 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLE  315 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~  315 (325)
                      .|++.+|++++|||||+|+||.+++.+++++.+++++|+.||++||.+++++.. |||+.+|.+|++...|++++.+..-
T Consensus       711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaL-CtR~aImv~G~l~ciGs~q~LKsrf  789 (885)
T KOG0059|consen  711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEAL-CTRTAIMVIGQLRCIGSPQELKSRY  789 (885)
T ss_pred             HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHH-hhhhheeecCeeEEecChHHHHhhc
Confidence            999999999999999999999999999999999988777999999999999998 6999999999999999998876444


Q ss_pred             hCCe
Q 020520          316 EGGY  319 (325)
Q Consensus       316 ~~~~  319 (325)
                      -+||
T Consensus       790 G~gy  793 (885)
T KOG0059|consen  790 GSGY  793 (885)
T ss_pred             CCcE
Confidence            4443

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.1e-35  Score=327.28  Aligned_cols=192  Identities=22%  Similarity=0.318  Sum_probs=148.1

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +++|+|+||+|++|++++|+||||||||||+++|+|+  ++|++|+|.+.              ..++|++|+|.++. .
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~--~~~~~G~i~~~--------------~~i~yv~Q~~~l~~-~  735 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ--FEISEGRVWAE--------------RSIAYVPQQAWIMN-A  735 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEEC--------------CeEEEEeCCCccCC-C
Confidence            5689999999999999999999999999999999998  68999999863              23889999998765 5


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc--CCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL--SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDE  249 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDE  249 (325)
                      |+.+|+.+.........     ........+.+.++.+  |+.. ..+... .+|||||||||+|||||+.+|++|||||
T Consensus       736 Tv~enI~~~~~~~~~~~-----~~~~~~~~l~~~l~~l~~g~~t-~i~~~g-~~LSGGQkqRvaLARAl~~~p~illLDE  808 (1560)
T PTZ00243        736 TVRGNILFFDEEDAARL-----ADAVRVSQLEADLAQLGGGLET-EIGEKG-VNLSGGQKARVSLARAVYANRDVYLLDD  808 (1560)
T ss_pred             cHHHHHHcCChhhHHHH-----HHHHHHhhhHHHHHHhhccchH-HhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            88888765321100000     0000011234455666  4432 233443 4599999999999999999999999999


Q ss_pred             cCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          250 IDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       250 PtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||++||+.+.+.+++.+ .... +|+|+|+||||++.+..  +|+|++|++|++++.|+.+.
T Consensus       809 P~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~~--ad~ii~l~~G~i~~~G~~~~  867 (1560)
T PTZ00243        809 PLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVPR--ADYVVALGDGRVEFSGSSAD  867 (1560)
T ss_pred             ccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHh--CCEEEEEECCEEEEecCHHH
Confidence            99999999999888744 3322 47899999999998863  69999999999999998653

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=294.26  Aligned_cols=202  Identities=24%  Similarity=0.351  Sum_probs=165.3

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      ...++++++|+++.|+++ +.+++++||.|.+|+.+||+||||+|||||+|+|+|.  ..|.+|+|.+.-.         
T Consensus       317 ~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~--~~~~~G~v~~g~~---------  384 (530)
T COG0488         317 LGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE--LGPLSGTVKVGET---------  384 (530)
T ss_pred             CCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh--cccCCceEEeCCc---------
Confidence            346789999999999653 6899999999999999999999999999999999996  5788999988532         


Q ss_pred             HhhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          153 RSLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                         ..++|..|+.. +.+..++.+++....         +...    ...+...|.++++..+...+++.. ||||||-|
T Consensus       385 ---v~igyf~Q~~~~l~~~~t~~d~l~~~~---------~~~~----e~~~r~~L~~f~F~~~~~~~~v~~-LSGGEk~R  447 (530)
T COG0488         385 ---VKIGYFDQHRDELDPDKTVLEELSEGF---------PDGD----EQEVRAYLGRFGFTGEDQEKPVGV-LSGGEKAR  447 (530)
T ss_pred             ---eEEEEEEehhhhcCccCcHHHHHHhhC---------cccc----HHHHHHHHHHcCCChHHHhCchhh-cCHhHHHH
Confidence               23778788863 335556666543321         1100    245677899999987767777764 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE-cCc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT-GDA  308 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~-g~~  308 (325)
                      +.||+.++.+|.+|||||||++||.++.+.+.+.|.++.   .|||+||||.+++..+ +++++.+++ ++... |+.
T Consensus       448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---Gtvl~VSHDr~Fl~~v-a~~i~~~~~-~~~~~~g~y  520 (530)
T COG0488         448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---GTVLLVSHDRYFLDRV-ATRIWLVED-KVEEFEGGY  520 (530)
T ss_pred             HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhh-cceEEEEcC-ceeEcCCCH
Confidence            999999999999999999999999999999999999883   4999999999999998 599999987 55544 543

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.5e-35  Score=265.14  Aligned_cols=199  Identities=21%  Similarity=0.269  Sum_probs=132.6

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHH-HHHhCCCCCCCCccEEEECC-------EeCCCC-CHHH--HhhccEE
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLS-KVLVGHPDYEVTEGSVVFKG-------ENLLEM-EPEE--RSLAGLF  159 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl-~~l~Gl~~~~p~~G~I~~~g-------~~i~~~-~~~~--~~~~~i~  159 (325)
                      +..+|+++||+|++||+++|+|+||||||||+ ..+..       .|++.+..       ..+... .+..  .+.....
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA   79 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence            46799999999999999999999999999996 33321       23322110       000000 0111  1111122


Q ss_pred             EeccCCcc--CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          160 MSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       160 ~~~Q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      +..|++..  .+..++.. +............     ......+ .+.++.+++.....++.+.+ |||||+|||+||||
T Consensus        80 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-----~~~~~~~-~~~l~~~~l~~~~~~~~~~~-LSgG~~qrv~lara  151 (226)
T cd03270          80 IAIDQKTTSRNPRSTVGT-VTEIYDYLRLLFA-----RVGIRER-LGFLVDVGLGYLTLSRSAPT-LSGGEAQRIRLATQ  151 (226)
T ss_pred             EEecCCCCCCCCCccHHH-HHHHHHHHHHHhh-----hhhHHHH-HHHHHHCCCCcccccCccCc-CCHHHHHHHHHHHH
Confidence            33344321  22222221 1111111000000     0111122 45788999864346777764 99999999999999


Q ss_pred             HHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE------eCCEEEEEc
Q 020520          238 AVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM------EDGRIIKTG  306 (325)
Q Consensus       238 L~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl------~~G~iv~~g  306 (325)
                      |+.+|  ++|||||||+|||+.+++.+.+.|++++++|.|||+||||++++. + ||++++|      ++|+|+++|
T Consensus       152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~-~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-A-ADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-h-CCEEEEeCCCccccCCEEEecC
Confidence            99998  599999999999999999999999998767899999999999874 5 7999999      999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-36  Score=254.89  Aligned_cols=192  Identities=22%  Similarity=0.335  Sum_probs=155.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +++.+||+...+  ...+|.++||++.+||++-|.||||||||||||+|+|+  ..|++|+|.|+|.++.........  
T Consensus         2 ~L~a~~L~~~R~--e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL--l~p~~G~v~~~~~~i~~~~~~~~~--   75 (209)
T COG4133           2 MLEAENLSCERG--ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL--LRPDAGEVYWQGEPIQNVRESYHQ--   75 (209)
T ss_pred             cchhhhhhhccC--cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc--cCCCCCeEEecCCCCccchhhHHH--
Confidence            578889987764  46899999999999999999999999999999999998  789999999999988765432211  


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+-|+-..+.+-+.+|+.||+.+.....    +.  ..    ...+.++++.+|+. .+.+.++.. ||-|||+||+|||
T Consensus        76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~----~~--~~----~~~i~~Al~~vgL~-g~~dlp~~~-LSAGQqRRvAlAr  143 (209)
T COG4133          76 ALLYLGHQPGIKTELTALENLHFWQRFH----GS--GN----AATIWEALAQVGLA-GLEDLPVGQ-LSAGQQRRVALAR  143 (209)
T ss_pred             HHHHhhccccccchhhHHHHHHHHHHHh----CC--Cc----hhhHHHHHHHcCcc-cccccchhh-cchhHHHHHHHHH
Confidence            1223334455667789999987653321    11  00    13467789999996 677888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      .++..++++||||||++||.+.+..+..++..-..+|.-||.+||+.--+
T Consensus       144 L~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~  193 (209)
T COG4133         144 LWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI  193 (209)
T ss_pred             HHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence            99999999999999999999999999999999888888899999976444

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.8e-36  Score=249.81  Aligned_cols=211  Identities=26%  Similarity=0.311  Sum_probs=169.7

Q ss_pred             cEEEEEEEEEEC-----CCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE----eCCC
Q 020520           77 LLQVTGLTAVIA-----ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE----NLLE  147 (325)
Q Consensus        77 ~l~~~~ls~~y~-----~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~----~i~~  147 (325)
                      .|.++|++|+|.     +-.-++++++||+++.||++++-||||||||||+|+|-|-  |.|++|+|.+.-.    ++..
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN--Y~~d~G~I~v~H~g~~vdl~~   81 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN--YLPDEGQILVRHEGEWVDLVT   81 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc--cCCCCceEEEEeCcchhhhhc
Confidence            588999999983     1124689999999999999999999999999999999996  8999999998532    2222


Q ss_pred             CCHH---HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020520          148 MEPE---ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF  224 (325)
Q Consensus       148 ~~~~---~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  224 (325)
                      ..+.   ..++.-++|+.|.....|.....+.+......    .+   ...+....++.+++.++++...++.-.+.. +
T Consensus        82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~----~g---v~~~~a~~~a~~Ll~rLnlperLW~LaPaT-F  153 (235)
T COG4778          82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA----RG---VPREVARAKAADLLTRLNLPERLWSLAPAT-F  153 (235)
T ss_pred             cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH----cC---CCHHHHHHHHHHHHHHcCCCHHHhcCCCcc-c
Confidence            2222   22334588998987777777766665444322    12   234556677888999999987777777764 9


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      ||||+|||-|||.++.+-+||+|||||++||..+++.+.++|.+-+..|.++|=|=||-+.-+.+ |||++-|.
T Consensus       154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~v-adR~~~~~  226 (235)
T COG4778         154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAV-ADRLLDVS  226 (235)
T ss_pred             CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHH-hhheeecc
Confidence            99999999999999999999999999999999999999999999888899999999997766666 79987664

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.2e-35  Score=310.04  Aligned_cols=254  Identities=22%  Similarity=0.290  Sum_probs=196.3

Q ss_pred             eehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCC
Q 020520           27 VFTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEG  105 (325)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~G  105 (325)
                      .+..|+.-++...+..-++..+.+|+.+.+..++.........+.......++++|.++++... ..+.|+||||+|++|
T Consensus       468 iLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G  547 (1381)
T KOG0054|consen  468 ILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKG  547 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCC
Confidence            4456666677777888888999999999887665544333222333456679999999998652 344899999999999


Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR  185 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      +.+||+|+-|||||+||.+|.|-  .+..+|+|.++|.              ++|++|.|.++.+ |+.+|+.++.... 
T Consensus       548 ~lvaVvG~vGsGKSSLL~AiLGE--m~~~sG~v~v~gs--------------iaYv~Q~pWI~ng-TvreNILFG~~~d-  609 (1381)
T KOG0054|consen  548 QLVAVVGPVGSGKSSLLSAILGE--MPKLSGSVAVNGS--------------VAYVPQQPWIQNG-TVRENILFGSPYD-  609 (1381)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC--cccccceEEEcCe--------------EEEeccccHhhCC-cHHHhhhcCcccc-
Confidence            99999999999999999999996  5678999999984              7899999998765 8888887653211 


Q ss_pred             hhcCCCCCChHHHHHh------HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHH
Q 020520          186 RKLGQPEIGPIEFYAY------LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL  259 (325)
Q Consensus       186 ~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~  259 (325)
                                ++.+++      +.+.++.+..++...-.+-|-+||||||||++||||+.++++|+|||.|+|++|....
T Consensus       610 ----------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg  679 (1381)
T KOG0054|consen  610 ----------EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG  679 (1381)
T ss_pred             ----------HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence                      111211      2223444443322222223336999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          260 RDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       260 ~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +.+.+..-.-.-+++|+|+|||.++++..  +|.|++|++|+|++.|+.++
T Consensus       680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~--ad~Iivl~~G~I~~~Gty~e  728 (1381)
T KOG0054|consen  680 KHIFEECIRGLLRGKTVILVTHQLQFLPH--ADQIIVLKDGKIVESGTYEE  728 (1381)
T ss_pred             HHHHHHHHHhhhcCCEEEEEeCchhhhhh--CCEEEEecCCeEecccCHHH
Confidence            99887665433457899999999998886  69999999999999998764

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.1e-32  Score=252.12  Aligned_cols=201  Identities=18%  Similarity=0.237  Sum_probs=139.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh--------CCCCCCCCcc-----------EEEECCEeCCCCCHHH
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV--------GHPDYEVTEG-----------SVVFKGENLLEMEPEE  152 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~--------Gl~~~~p~~G-----------~I~~~g~~i~~~~~~~  152 (325)
                      ...|+|+|++|+.|.+++|+|+||||||||++.+.        +.....|..+           -|.++..++...+...
T Consensus         8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~   87 (261)
T cd03271           8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN   87 (261)
T ss_pred             hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence            34699999999999999999999999999998652        1000012111           3555555553321100


Q ss_pred             Hhh-------------------------ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHH
Q 020520          153 RSL-------------------------AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE  207 (325)
Q Consensus       153 ~~~-------------------------~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (325)
                      ...                         ..+.|..++...+..+++.+++.+....             ....+..+.++
T Consensus        88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~-------------~~~~~~~~~L~  154 (261)
T cd03271          88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI-------------PKIARKLQTLC  154 (261)
T ss_pred             HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh-------------hhHHHHHHHHH
Confidence            000                         0011111222222333444443322110             00134556788


Q ss_pred             hcCCccccccccCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG---ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       208 ~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~---p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      .+++.+..+++.+. +|||||+||++|||+|+.+   |+++||||||+|||+..++.+.+.|+++.++|.|||+||||++
T Consensus       155 ~vgL~~l~l~~~~~-~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~  233 (261)
T cd03271         155 DVGLGYIKLGQPAT-TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD  233 (261)
T ss_pred             HcCCchhhhcCccc-cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            99996424566665 4999999999999999996   7999999999999999999999999999877899999999999


Q ss_pred             HHhhhCCcEEEEE------eCCEEEEEcCc
Q 020520          285 LLEFIKPTFIHIM------EDGRIIKTGDA  308 (325)
Q Consensus       285 ~~~~~~~d~i~vl------~~G~iv~~g~~  308 (325)
                      ++. . +|++++|      ++|+|++.|++
T Consensus       234 ~i~-~-aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         234 VIK-C-ADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             HHH-h-CCEEEEecCCcCCCCCEEEEeCCC
Confidence            886 4 7999999      89999999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-32  Score=266.09  Aligned_cols=222  Identities=23%  Similarity=0.339  Sum_probs=186.1

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..+.++++|++..      ..++|+||++.+||++||.|-=|||+|-|+++|.|.  .++.+|+|.++|+++...++.+.
T Consensus       260 ~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~sp~~A  331 (500)
T COG1129         260 GEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIRSPRDA  331 (500)
T ss_pred             CCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCCCHHHH
Confidence            4678999999842      258999999999999999999999999999999997  56789999999999988887776


Q ss_pred             hhccEEEeccCC---ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          154 SLAGLFMSFQSP---VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       154 ~~~~i~~~~Q~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      -..+++|++.|.   -++..+++.+|+............  -.......+.+.++.+++++...-.+..+.. ||||-+|
T Consensus       332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~--~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~-LSGGNQQ  408 (500)
T COG1129         332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG--LIDRRKERALAERYIRRLRIKTPSPEQPIGT-LSGGNQQ  408 (500)
T ss_pred             HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc--ccChHHHHHHHHHHHHhcCcccCCccchhhc-CCchhhh
Confidence            667999999774   367788888888766211111111  2333444556777889999876656666664 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||.|||.|..+|++|||||||.|.|.-++.+|+++|++++++|++||+||-++.++..+ ||||+||++|+++.+-+
T Consensus       409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~-~DRIlVm~~Gri~~e~~  484 (500)
T COG1129         409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGL-SDRILVMREGRIVGELD  484 (500)
T ss_pred             hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhh-CCEEEEEECCEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999887 69999999999997543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=6.2e-33  Score=229.73  Aligned_cols=134  Identities=30%  Similarity=0.445  Sum_probs=107.4

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchH
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNI  174 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~  174 (325)
                      |+|+||+|++|++++|+|+||||||||+++|+|+  ++|++|+|.++|.++...+....+ ..+++++|++.+++..++.
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~--~~~~~G~i~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~tv~   77 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL--LPPDSGSILINGKDISDIDIEELR-RRIGYVPQDPQLFPGLTVR   77 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS--SHESEEEEEETTEEGTTSHHHHHH-HTEEEEESSHCHHTTSBHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccc--cccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            7899999999999999999999999999999998  678999999999999874433333 4588999998888888877


Q ss_pred             HHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc---ccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020520          175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT---DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID  251 (325)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt  251 (325)
                      ++.                    ....+.++++.+++..   ...++... .|||||||||+|||||+.+|++|||||||
T Consensus        78 ~~~--------------------~~~~~~~~l~~l~~~~~~~~~~~~~~~-~LS~Ge~~rl~la~al~~~~~llllDEPt  136 (137)
T PF00005_consen   78 ENE--------------------SDERIEEVLKKLGLEDLLDRKIGQRAS-SLSGGEKQRLALARALLKNPKLLLLDEPT  136 (137)
T ss_dssp             HHH--------------------HHHHHHHHHHHTTHGGGTGSBGTSCGG-GSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred             ccc--------------------ccccccccccccccccccccccccccc-hhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            661                    0123445566666532   22233334 59999999999999999999999999999


Q ss_pred             c
Q 020520          252 S  252 (325)
Q Consensus       252 s  252 (325)
                      |
T Consensus       137 ~  137 (137)
T PF00005_consen  137 N  137 (137)
T ss_dssp             T
T ss_pred             C
Confidence            7

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.98  E-value=1.9e-32  Score=241.50  Aligned_cols=166  Identities=19%  Similarity=0.266  Sum_probs=126.4

Q ss_pred             ce-eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC---------ccEEEECCEeCCCCCHHHHhhccEEEecc
Q 020520           94 IL-KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT---------EGSVVFKGENLLEMEPEERSLAGLFMSFQ  163 (325)
Q Consensus        94 iL-~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---------~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q  163 (325)
                      -+ +++++++.+| +++|+||||||||||+++|+|+  ..+.         .|++.+.|+++....    ....++++||
T Consensus        11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~vfq   83 (197)
T cd03278          11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWV--LGEQSAKSLRGEKMSDVIFAGSETRKPA----NFAEVTLTFD   83 (197)
T ss_pred             CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHH--hccccchhhcccCHHHHhccCCCCCCCC----ceEEEEEEEE
Confidence            35 7789999999 9999999999999999999997  3232         356777777653311    1235889999


Q ss_pred             CCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH----
Q 020520          164 SPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV----  239 (325)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~----  239 (325)
                      ++..+...                 . .       ..++.++++.    .+..++.+. .||||||||++||++|+    
T Consensus        84 ~~~~~~~~-----------------~-~-------~~~~~~~l~~----~~~~~~~~~-~LS~G~kqrl~la~~l~~~~~  133 (197)
T cd03278          84 NSDGRYSI-----------------I-S-------QGDVSEIIEA----PGKKVQRLS-LLSGGEKALTALALLFAIFRV  133 (197)
T ss_pred             cCCCceeE-----------------E-e-------hhhHHHHHhC----CCccccchh-hcCHHHHHHHHHHHHHHHhcc
Confidence            98654100                 0 0       1133444555    134556665 49999999999999997    


Q ss_pred             hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      .+|+++||||||++||+..+..+.+.|+++.+ +.|||+||||++++. . +|+++.+..
T Consensus       134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~-~-~d~v~~~~~  190 (197)
T cd03278         134 RPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTME-A-ADRLYGVTM  190 (197)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHh-h-cceEEEEEe
Confidence            46699999999999999999999999999865 589999999999875 4 689987753

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.97  E-value=1.4e-31  Score=238.71  Aligned_cols=195  Identities=22%  Similarity=0.205  Sum_probs=131.6

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEe-CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVN-EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~-~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .|+++|+. +|.+  .   ++++|+.. +|++++|+||||||||||+++|++.+ +.+..+....+ .....+... ...
T Consensus         5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l-~g~~~~~~~~~-~~~~~~~~~-~~~   75 (213)
T cd03279           5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL-YGKTPRYGRQE-NLRSVFAPG-EDT   75 (213)
T ss_pred             EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE-ecCccccccch-hHHHHhcCC-Ccc
Confidence            47888888 6643  2   56677654 58999999999999999999999642 33444444332 000001001 112


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+.++||++....  .+....              ..+..+....+  .+...++. ++.++.+. .|||||+||++||
T Consensus        76 ~~v~~~f~~~~~~~--~~~r~~--------------gl~~~~~~~~~--~l~~g~l~-~~l~~~~~-~lS~G~~~r~~la  135 (213)
T cd03279          76 AEVSFTFQLGGKKY--RVERSR--------------GLDYDQFTRIV--LLPQGEFD-RFLARPVS-TLSGGETFLASLS  135 (213)
T ss_pred             EEEEEEEEECCeEE--EEEEec--------------CCCHHHHHHhh--hhhhcchH-HHhcCCcc-ccCHHHHHHHHHH
Confidence            34777788763211  111100              11111111111  12222232 34566665 4999999999999


Q ss_pred             HHHHh----------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          236 QLAVL----------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       236 raL~~----------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      |||+.          +|+++||||||++||+.+++.+.+.|+++++++.|||+||||++++..+ +|+++++++|.
T Consensus       136 ~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~-~~~i~~~~~~~  210 (213)
T cd03279         136 LALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI-PQRLEVIKTPG  210 (213)
T ss_pred             HHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhh-CcEEEEEecCC
Confidence            99985          5789999999999999999999999999976688999999999999887 79999999885

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=5.2e-31  Score=245.56  Aligned_cols=242  Identities=18%  Similarity=0.248  Sum_probs=171.3

Q ss_pred             hhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHH
Q 020520           40 SNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKS  119 (325)
Q Consensus        40 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKS  119 (325)
                      -.+..+..+.++++..-. .+.+... .+.+..+.-..|+++|+.|.|... ..=+..||++|++||++-|+|.||||||
T Consensus       287 P~l~~AqvA~~kiakle~-~~~~a~~-~~~q~~p~~~~lelrnvrfay~~~-~FhvgPiNl~ikrGelvFliG~NGsGKS  363 (546)
T COG4615         287 PTLLTAQVAFNKIAKLEL-APYKADF-PRPQAFPDWKTLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKS  363 (546)
T ss_pred             hHHHHHHHHHHHHHHhhc-CCccccC-CCCCcCCcccceeeeeeeeccCcc-cceecceeeEEecCcEEEEECCCCCcHH
Confidence            445566666777665433 2222111 122222224469999999999753 2458899999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH
Q 020520          120 TLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY  199 (325)
Q Consensus       120 TLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (325)
                      ||+++|.|+  ++|++|+|++||++++.-+.++.+.. +.-+|-|..+|+.+-..               ......    
T Consensus       364 T~~~LLtGL--~~PqsG~I~ldg~pV~~e~ledYR~L-fSavFsDyhLF~~ll~~---------------e~~as~----  421 (546)
T COG4615         364 TLAMLLTGL--YQPQSGEILLDGKPVSAEQLEDYRKL-FSAVFSDYHLFDQLLGP---------------EGKASP----  421 (546)
T ss_pred             HHHHHHhcc--cCCCCCceeECCccCCCCCHHHHHHH-HHHHhhhHhhhHhhhCC---------------ccCCCh----
Confidence            999999998  89999999999999988776654332 23345555554421110               000111    


Q ss_pred             HhHHHHHHhcCCcc--ccccccC-CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc-cCCCcE
Q 020520          200 AYLYPKLERLSMKT--DFLNRNV-NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL-LTPKNS  275 (325)
Q Consensus       200 ~~~~~~l~~~~l~~--~~~~~~~-~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l-~~~g~t  275 (325)
                      ..+...++++.+..  ...++.. ...||.|||+|+++--|++-+.+|++|||=-+--||.-++++++.+--+ +++|+|
T Consensus       422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT  501 (546)
T COG4615         422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT  501 (546)
T ss_pred             HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence            12333444444421  2233332 2249999999999999999999999999999999999999999877654 566999


Q ss_pred             EEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          276 LLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       276 vIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |+.||||-....  ++||++.|++|++++.-..
T Consensus       502 I~aIsHDd~YF~--~ADrll~~~~G~~~e~tge  532 (546)
T COG4615         502 IFAISHDDHYFI--HADRLLEMRNGQLSELTGE  532 (546)
T ss_pred             EEEEecCchhhh--hHHHHHHHhcCceeecccc
Confidence            999999865443  4799999999999976543

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.97  E-value=2.8e-31  Score=255.53  Aligned_cols=203  Identities=25%  Similarity=0.343  Sum_probs=157.6

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      +.|.+.+.|++|.|.++ ..++++++|-|..++.+++|||||+|||||||+++|.  ..|+.|.|.-.-...        
T Consensus       386 p~pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd--l~p~~G~vs~~~H~~--------  454 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD--LQPTIGMVSRHSHNK--------  454 (614)
T ss_pred             CCCeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc--ccccccccccccccc--------
Confidence            56899999999999753 3799999999999999999999999999999999997  679999886543221        


Q ss_pred             hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                          +.+.-|+..  +--..+..+++...+       ..     ....+.+..++.++|+..+..+.++. +||+|||.|
T Consensus       455 ----~~~y~Qh~~e~ldl~~s~le~~~~~~-------~~-----~~~~e~~r~ilgrfgLtgd~q~~p~~-~LS~Gqr~r  517 (614)
T KOG0927|consen  455 ----LPRYNQHLAEQLDLDKSSLEFMMPKF-------PD-----EKELEEMRSILGRFGLTGDAQVVPMS-QLSDGQRRR  517 (614)
T ss_pred             ----chhhhhhhHhhcCcchhHHHHHHHhc-------cc-----cchHHHHHHHHHHhCCCccccccchh-hcccccchh
Confidence                111123221  112234444433222       11     11234567789999997565666665 599999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDA  308 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~  308 (325)
                      |++|+.++.+|.+|||||||+|||.++...+.+.|.++.   .+||+||||..++..+ +++|++..+|.+. ..|+.
T Consensus       518 VlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~vSHDfrlI~qV-aeEi~~c~~~~~~~~~G~i  591 (614)
T KOG0927|consen  518 VLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLVSHDFRLISQV-AEEIWVCENGTVTKWDGDI  591 (614)
T ss_pred             HHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---CceeeeechhhHHHHH-HHHhHhhccCceeecCccH
Confidence            999999999999999999999999999999999999873   3799999999999998 6889988888765 45654

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=1.1e-31  Score=225.80  Aligned_cols=208  Identities=24%  Similarity=0.338  Sum_probs=161.2

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ++.++||+..      +-|-.+|.++..||++-+|||||||||||+-.++|+   .|.+|+|.++|.++..+...+..+.
T Consensus         3 l~qln~v~~~------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm---~~~sGsi~~~G~~l~~~~~~eLArh   73 (248)
T COG4138           3 LMQLNDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGSGSIQFAGQPLEAWSATELARH   73 (248)
T ss_pred             eeeecccccc------ccccccccccccceEEEEECCCCccHHHHHHHHhCC---CCCCceEEECCcchhHHhHhHHHHH
Confidence            5778888753      247789999999999999999999999999999996   4789999999999988776554433


Q ss_pred             cEEEec-cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          157 GLFMSF-QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       157 ~i~~~~-Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+... |.|.  ..+.++.++..         ..+   ..+....+.++...++++ +.+.|.+.+ |||||-|||-+|
T Consensus        74 RAYLsQqq~p~--f~mpV~~YL~L---------~qP---~~~~a~~i~~i~~~L~l~-DKL~Rs~~q-LSGGEWQRVRLA  137 (248)
T COG4138          74 RAYLSQQQTPP--FAMPVWHYLTL---------HQP---DKTRTELLNDVAGALALD-DKLGRSTNQ-LSGGEWQRVRLA  137 (248)
T ss_pred             HHHHhhccCCc--chhhhhhhhhh---------cCc---hHHHHHHHHHHHhhhccc-chhhhhhhh-cCcccceeeEEe
Confidence            222222 2332  12334333322         112   123334566677788886 567787765 999999999999


Q ss_pred             HHHHh-------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          236 QLAVL-------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       236 raL~~-------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      ...++       ..++||+|||.++||...+..+..+|.+++..|.+|||++||++--..- +|++++++.|++...|..
T Consensus       138 av~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrh-A~~~wLL~rG~l~~~G~~  216 (248)
T COG4138         138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRH-AHRAWLLKRGKLLASGRR  216 (248)
T ss_pred             EEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHH-HHHHHHHhcCeEEeecch
Confidence            87764       3469999999999999999999999999999999999999999876654 799999999999999987


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       217 ~e  218 (248)
T COG4138         217 EE  218 (248)
T ss_pred             hh
Confidence            54

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.97  E-value=4.7e-29  Score=238.87  Aligned_cols=234  Identities=18%  Similarity=0.252  Sum_probs=193.3

Q ss_pred             CCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC-CCCCH
Q 020520           72 EKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL-LEMEP  150 (325)
Q Consensus        72 ~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i-~~~~~  150 (325)
                      .+..+.|+++||++.-.. +...+++|||+|.+||++||.|-.|-|-+.|+.+|+|+  .++.+|+|.++|+++ ..+++
T Consensus       252 ~pg~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGl--r~~~~G~I~l~G~~v~~~~~~  328 (501)
T COG3845         252 TPGEVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL--RKPASGRILLNGKDVLGRLSP  328 (501)
T ss_pred             CCCCeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCC--CccCCceEEECCEeccccCCH
Confidence            345789999999987543 35789999999999999999999999999999999998  567789999999997 67788


Q ss_pred             HHHhhccEEEeccCCc---cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH
Q 020520          151 EERSLAGLFMSFQSPV---EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG  227 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG  227 (325)
                      ..++..+++++|.+..   +.+.++..+|+..............-....+..+...+.++++.....-...+.. +||||
T Consensus       329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~-~LSGG  407 (501)
T COG3845         329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR-SLSGG  407 (501)
T ss_pred             HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchh-hcCCc
Confidence            8888889999998863   5677888888765432110001111234455666777888999886433334444 59999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      .+||+-+||-|..+|++||+.+||-|||..+.+.|.+.|.+.++.|++|++||-|++++..+ ||||.||.+|+|+...+
T Consensus       408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~l-sDrIaVi~~Gri~~~~~  486 (501)
T COG3845         408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILEL-SDRIAVIYEGRIVGIVP  486 (501)
T ss_pred             ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHh-hheeeeeeCCceecccc
Confidence            99999999999999999999999999999999999999999999999999999999999988 69999999999998777


Q ss_pred             ccH
Q 020520          308 ASI  310 (325)
Q Consensus       308 ~~~  310 (325)
                      ++.
T Consensus       487 ~~~  489 (501)
T COG3845         487 PEE  489 (501)
T ss_pred             ccc
Confidence            653

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=1.8e-30  Score=224.44  Aligned_cols=228  Identities=22%  Similarity=0.344  Sum_probs=174.5

Q ss_pred             CcEEEEEEEEEEC--CCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC--CCCCCccEEEECCEeCCCCCHH
Q 020520           76 PLLQVTGLTAVIA--ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP--DYEVTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        76 ~~l~~~~ls~~y~--~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~--~~~p~~G~I~~~g~~i~~~~~~  151 (325)
                      +.+.++|++..+.  .+...+++++|+++++||+-|+||+||||||-..|+|+|..  .+..+..+.++++.++..+++.
T Consensus         2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr   81 (330)
T COG4170           2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence            5678899998874  23356899999999999999999999999999999999962  1234667888999999999988


Q ss_pred             HHhhc---cEEEeccCCccC--CCcchH-HHHHHHH--HHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc--ccccccCC
Q 020520          152 ERSLA---GLFMSFQSPVEI--PGVNNI-DFLHMAY--NARRRKLGQPEIGPIEFYAYLYPKLERLSMKT--DFLNRNVN  221 (325)
Q Consensus       152 ~~~~~---~i~~~~Q~~~~~--~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~  221 (325)
                      +|++.   .+.++||+|...  |..++- +.+...-  .....++..  ...  .+.++-++|.++|+..  +.+..++.
T Consensus        82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~--F~W--rKrrAIeLLHrVGIKdHkDIM~SYP~  157 (330)
T COG4170          82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQR--FGW--RKRRAIELLHRVGIKDHKDIMRSYPY  157 (330)
T ss_pred             HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhh--hch--hHHHHHHHHHHhccccHHHHHHhCcc
Confidence            76652   478999998632  222211 1111100  000011100  001  1245667899999963  23444554


Q ss_pred             CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                       +|--||-|+|+||.|++.+|++||.||||+++|+.++.++..+|..+.+. |+||++++||+..+... ||+|-||.-|
T Consensus       158 -ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W-~d~i~VlYCG  235 (330)
T COG4170         158 -ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQW-ADKINVLYCG  235 (330)
T ss_pred             -hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHH-hhheEEEEec
Confidence             49999999999999999999999999999999999999999999999754 88999999999999987 7999999999


Q ss_pred             EEEEEcCcc
Q 020520          301 RIIKTGDAS  309 (325)
Q Consensus       301 ~iv~~g~~~  309 (325)
                      +-++.++.+
T Consensus       236 Q~~ESa~~e  244 (330)
T COG4170         236 QTVESAPSE  244 (330)
T ss_pred             ccccccchh
Confidence            999888654

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=3.1e-30  Score=269.27  Aligned_cols=234  Identities=24%  Similarity=0.255  Sum_probs=181.9

Q ss_pred             cEEEEEEEEEE--CCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVI--AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y--~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      +...+|+.+.-  .++.+++|+||+=-+++|-.+||+|+|||||||||++|+|-..-...+|+|+++|.+..+.  .-. 
T Consensus       787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~--tF~-  863 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQE--TFA-  863 (1391)
T ss_pred             eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchh--hhc-
Confidence            44455555443  2345789999999999999999999999999999999999522335689999999986531  112 


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc--cccccccCCCCCChHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK--TDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~LSgGqrQRv  232 (325)
                       +.+||+.|++...+.+||.|-+.+....+.    ..+++.++..+.++++++.++++  .+.+-..++.+||..||+|+
T Consensus       864 -R~~GYvqQ~DiH~~~~TVrESL~fSA~LRl----p~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrL  938 (1391)
T KOG0065|consen  864 -RVSGYVEQQDIHSPELTVRESLRFSAALRL----PKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRL  938 (1391)
T ss_pred             -cccceeecccccCcccchHHHHHHHHHHcC----CCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhcee
Confidence             237888899888899999998877654432    12344556667889999999996  23333455567999999999


Q ss_pred             HHHHHHHhCC-CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe-CCEEEEEcCccH
Q 020520          233 EILQLAVLGA-DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME-DGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p-~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~-~G~iv~~g~~~~  310 (325)
                      .||--|+.+| .||+|||||||||..+...|++.+++++..|.|||.+-|.+...-.-..|++++|+ .|+.|+.|+...
T Consensus       939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            9999999999 99999999999999999999999999999999999999997643222248898885 578999998642


Q ss_pred             -----HHHHHhCC
Q 020520          311 -----ATVLEEGG  318 (325)
Q Consensus       311 -----~~~~~~~~  318 (325)
                           .+..+..+
T Consensus      1019 ~s~~li~YFes~~ 1031 (1391)
T KOG0065|consen 1019 NSSKLIEYFESIG 1031 (1391)
T ss_pred             ccHHHHHHHHhcC
Confidence                 34555555

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=3.5e-29  Score=227.13  Aligned_cols=200  Identities=18%  Similarity=0.216  Sum_probs=123.7

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC--------------CCCCCcc-------
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP--------------DYEVTEG-------  136 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~--------------~~~p~~G-------  136 (325)
                      |+++|.. +|++  +.++++++     |++++|+||||||||||+++|+++.              ...+.+|       
T Consensus         4 i~~~nfk-sy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~   75 (243)
T cd03272           4 VIIQGFK-SYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY   75 (243)
T ss_pred             EEEeCcc-Cccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence            4556553 4643  56788876     8899999999999999999998431              0233445       


Q ss_pred             -EEEECCEeCC-CCCHHH-HhhccEEEeccCCccCCC-cchHHHHHHHHHHHhhhcCCCCCChH--HHHHhHHHHHHhcC
Q 020520          137 -SVVFKGENLL-EMEPEE-RSLAGLFMSFQSPVEIPG-VNNIDFLHMAYNARRRKLGQPEIGPI--EFYAYLYPKLERLS  210 (325)
Q Consensus       137 -~I~~~g~~i~-~~~~~~-~~~~~i~~~~Q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~  210 (325)
                       +|.+++.+-. ...... .-+..+++++|+..++.. .+..+.......     .+.......  ....++   .+.++
T Consensus        76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~-----~gl~~~~~~~~~~qg~i---~~l~~  147 (243)
T cd03272          76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES-----AGFSRSNPYYIVPQGKI---NSLTN  147 (243)
T ss_pred             EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH-----cCCCCCCCcEEEEcCch---HHhhh
Confidence             5555543211 000011 111235666776655542 343333222211     111100000  000111   12223


Q ss_pred             CccccccccCCCCCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          211 MKTDFLNRNVNEGFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       211 l~~~~~~~~~~~~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      +. ...+..+. .||||||||++|||||+.    +|+++||||||++||+.+++.+++.|+++.+ +.+||++||+.+. 
T Consensus       148 l~-~~~~~~~~-~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~-  223 (243)
T cd03272         148 MK-QDEQQEMQ-QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPEL-  223 (243)
T ss_pred             cc-cccccccc-ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH-
Confidence            32 22344554 599999999999999974    5899999999999999999999999999865 6789999998664 


Q ss_pred             hhhCCcEEEEEe
Q 020520          287 EFIKPTFIHIME  298 (325)
Q Consensus       287 ~~~~~d~i~vl~  298 (325)
                      ..+ ||++++|.
T Consensus       224 ~~~-~d~i~~l~  234 (243)
T cd03272         224 LEV-ADKFYGVK  234 (243)
T ss_pred             Hhh-CCEEEEEE
Confidence            455 69998874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.96  E-value=1.5e-29  Score=243.75  Aligned_cols=220  Identities=21%  Similarity=0.275  Sum_probs=150.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC-CCCCCccEEEECCEeCCCCCHHHH
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP-DYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~-~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..-+.++|+++.|.+  ..+++|++|++.+|+.+||+|+|||||||+|++|.|-. +.++.-+ ++...+.+..-.....
T Consensus        73 s~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~~av  149 (614)
T KOG0927|consen   73 SRDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEKQAV  149 (614)
T ss_pred             cccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchHHHH
Confidence            346899999999964  78999999999999999999999999999999999952 2222222 2222222211110000


Q ss_pred             hhccEEEeccCCccC-----------CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020520          154 SLAGLFMSFQSPVEI-----------PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE  222 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  222 (325)
                       ...+-..++...-+           ... ..+-+...+..      ..+...+.+..++..++..+|...+..++....
T Consensus       150 -~~v~~~~~~e~~rle~~~E~l~~~~d~~-~~~~l~~~~~r------~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~  221 (614)
T KOG0927|consen  150 -QAVVMETDHERKRLEYLAEDLAQACDDK-EKDELDELYER------LDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD  221 (614)
T ss_pred             -HHHhhhhHHHHHHHHHHHHHHHhhccch-hhhHHHHHHHH------HHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhc
Confidence             00000000100000           000 00000000100      011122334456667788888877777888765


Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE-
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR-  301 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~-  301 (325)
                       ||||+|.|++|||+|..+|++|||||||+|||+++..++-+.|.++..  .++|+++|+.+++..+ |..|+-|++++ 
T Consensus       222 -~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDfln~v-CT~Ii~l~~kkl  297 (614)
T KOG0927|consen  222 -LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDFLNGV-CTNIIHLDNKKL  297 (614)
T ss_pred             -cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhhhhhH-hhhhheecccce
Confidence             999999999999999999999999999999999999999999988742  2899999999999998 58899999999 


Q ss_pred             EEEEcCcc
Q 020520          302 IIKTGDAS  309 (325)
Q Consensus       302 iv~~g~~~  309 (325)
                      +.+.|+.+
T Consensus       298 ~~y~Gnyd  305 (614)
T KOG0927|consen  298 IYYEGNYD  305 (614)
T ss_pred             eeecCCHH
Confidence            55667654

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=8.9e-30  Score=232.51  Aligned_cols=183  Identities=16%  Similarity=0.237  Sum_probs=125.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCCCCCCCC-ccEEEECCE-eCCCCCHH-HHhhccEEEeccCCc---------cCCCcc
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-EGSVVFKGE-NLLEMEPE-ERSLAGLFMSFQSPV---------EIPGVN  172 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-~G~I~~~g~-~i~~~~~~-~~~~~~i~~~~Q~~~---------~~~~~~  172 (325)
                      ..+++|+||||||||||+++|+++  +.+. .|++++.|. ++...... ......+.++||++.         +.+.++
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~l--l~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt  102 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFV--LGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT  102 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--hcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence            459999999999999999999997  4444 468888776 33211100 111235778889852         223444


Q ss_pred             hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-------------------ccccccCCCCCChHHHHHHH
Q 020520          173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-------------------DFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~~LSgGqrQRv~  233 (325)
                      +.+++......   .+...  ........+.+.++.+++..                   +..++.+. .||||||||++
T Consensus       103 V~r~I~~~~~~---~~~in--~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~-~lS~G~~qr~~  176 (251)
T cd03273         103 VTRQIVLGGTN---KYLIN--GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLT-ELSGGQRSLVA  176 (251)
T ss_pred             EEEEEEcCCce---EEEEC--CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccccc-ccCHHHHHHHH
Confidence            44332211100   00000  01122356777888888852                   22345555 59999999999


Q ss_pred             HHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          234 ILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       234 iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      |||||+    .+|+++||||||++||+..++.+.+.|+++. +|.|||+|||+.+... . ||+++-+.
T Consensus       177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~-~-~d~v~~~~  242 (251)
T cd03273         177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFN-N-ANVLFRTR  242 (251)
T ss_pred             HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHH-h-CCEEEEEE
Confidence            999998    5789999999999999999999999999985 4789999999976665 4 68887553

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.96  E-value=4e-28  Score=240.50  Aligned_cols=193  Identities=23%  Similarity=0.355  Sum_probs=145.4

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ...++++||+..-+. ++..+++.+|+|++||.+.|.||||||||||+|+|+|+  ++-.+|+|.+-.            
T Consensus       390 ~~~i~~~nl~l~~p~-~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL--WP~g~G~I~~P~------------  454 (604)
T COG4178         390 DHGITLENLSLRTPD-GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL--WPWGSGRISMPA------------  454 (604)
T ss_pred             cceeEEeeeeEECCC-CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc--CccCCCceecCC------------
Confidence            578999999999875 46899999999999999999999999999999999998  555678776531            


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccc------cCCCCCChHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR------NVNEGFSGGE  228 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~LSgGq  228 (325)
                      ...+.|+||.|++-.+ +-.+.+..+-.       .....+    +.+.++|.+++++ ++.++      .- ..||+||
T Consensus       455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~-------~~~~~d----~~l~~vL~~vgL~-~L~~rl~~~~~W~-~vLS~GE  520 (604)
T COG4178         455 DSALLFLPQRPYLPQG-TLREALCYPNA-------APDFSD----AELVAVLHKVGLG-DLAERLDEEDRWD-RVLSGGE  520 (604)
T ss_pred             CCceEEecCCCCCCCc-cHHHHHhCCCC-------CCCCCh----HHHHHHHHHcCcH-HHHHHHhccCcHh-hhcChhH
Confidence            1236789999987555 55554432211       111222    2355667777775 22221      11 2499999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      ||||++||.|+++|++++|||.|++||++++..+++++++-. .+.|||-|+|...+... ....+-+.+
T Consensus       521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~-h~~~l~l~~  588 (604)
T COG4178         521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNF-HSRQLELLD  588 (604)
T ss_pred             HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHH-Hhhheeecc
Confidence            999999999999999999999999999999999999998743 36899999998765543 334343333

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.96  E-value=4.6e-28  Score=263.71  Aligned_cols=217  Identities=19%  Similarity=0.284  Sum_probs=149.8

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHH---------HHhCCCCCCCCc----cE----E
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSK---------VLVGHPDYEVTE----GS----V  138 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~---------~l~Gl~~~~p~~----G~----I  138 (325)
                      +.++++|++.       ..|+++||+|+.||+++|+|+||||||||++         .|.|.  ..+..    +.    |
T Consensus       599 ~~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~--~~~~~~i~g~~i~~vi  669 (1809)
T PRK00635        599 GTLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQG--FCSNLSIQWGAISRLV  669 (1809)
T ss_pred             CeEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCC--CcccccccccccceeE
Confidence            4688888862       3699999999999999999999999999999         55563  11111    11    2


Q ss_pred             EECCEeCCCCCH-----------HHH---------hhc---cEEEeccC------------------C------------
Q 020520          139 VFKGENLLEMEP-----------EER---------SLA---GLFMSFQS------------------P------------  165 (325)
Q Consensus       139 ~~~g~~i~~~~~-----------~~~---------~~~---~i~~~~Q~------------------~------------  165 (325)
                      .++..++...+.           ..+         +..   ...+.|+.                  +            
T Consensus       670 ~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~Gk  749 (1809)
T PRK00635        670 HITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGK  749 (1809)
T ss_pred             EecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCc
Confidence            344333321100           001         011   11223332                  0            


Q ss_pred             --------ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccc-ccccCCCCCChHHHHHHHHHH
Q 020520          166 --------VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDF-LNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       166 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~LSgGqrQRv~iAr  236 (325)
                              ..+...++.+++.+....... +.   ....+...++ +.++.+++. +. +++.+.. |||||+||++|||
T Consensus       750 Ry~~e~L~~~~~~~tI~evL~mtv~ea~~-~f---~~~~~i~~~l-~~L~~vGL~-~l~l~q~~~t-LSGGE~QRV~LAr  822 (1809)
T PRK00635        750 RFLPQVLEVRYKGKNIADILEMTAYEAEK-FF---LDEPSIHEKI-HALCSLGLD-YLPLGRPLSS-LSGGEIQRLKLAY  822 (1809)
T ss_pred             ccCHHHHhhccCCCCHHHHHHcCHHHHHH-cc---cChHHHHHHH-HHHHHcCCc-chhhcCcccc-CCHHHHHHHHHHH
Confidence                    022334555555443321111 11   1122333445 478889996 33 5677764 9999999999999


Q ss_pred             HHH---hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe------CCEEEEEcC
Q 020520          237 LAV---LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME------DGRIIKTGD  307 (325)
Q Consensus       237 aL~---~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~------~G~iv~~g~  307 (325)
                      ||+   .+|++|||||||+|||+.+++.++++|++++++|.|||+||||++++ .. +|++++|.      +|++++.|+
T Consensus       823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~-aDrVi~L~p~gg~~~G~iv~~Gt  900 (1809)
T PRK00635        823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KV-ADYVLELGPEGGNLGGYLLASCS  900 (1809)
T ss_pred             HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-Hh-CCEEEEEccCCCCCCCEEEEeCC
Confidence            998   69999999999999999999999999999987789999999999988 55 79999996      799999998


Q ss_pred             ccH
Q 020520          308 ASI  310 (325)
Q Consensus       308 ~~~  310 (325)
                      ++.
T Consensus       901 pee  903 (1809)
T PRK00635        901 PEE  903 (1809)
T ss_pred             HHH
Confidence            864

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.95  E-value=1.3e-28  Score=218.30  Aligned_cols=165  Identities=18%  Similarity=0.196  Sum_probs=114.8

Q ss_pred             eEEEEeCCCEEEEEcCCCccHHHHHHHHh----CCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCc-----cC
Q 020520           98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLV----GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPV-----EI  168 (325)
Q Consensus        98 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~----Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~-----~~  168 (325)
                      .++++.+| +++|+||||||||||+++|.    |.  ..|..|.+..+...+.. .   .....+.++||++.     ..
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~--~~~~~~~~~~~~~~i~~-~---~~~~~v~~~f~~~~~~~~~v~   88 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGE--LPPNSKGGAHDPKLIRE-G---EVRAQVKLAFENANGKKYTIT   88 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCC--CCcccccccchHHHHhC-C---CCcEEEEEEEEeCCCCEEEEE
Confidence            45667777 99999999999999999995    75  44666666522211111 1   11234777888872     11


Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH------HHHHHHHHhCC
Q 020520          169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR------NEILQLAVLGA  242 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR------v~iAraL~~~p  242 (325)
                      ..+++.+++...             ...    .+.+.+          ++.+. .||+||+||      ++||||++.+|
T Consensus        89 r~~~~~~~~~~~-------------~~~----~~~~~~----------~~~~~-~LS~G~~~~~~la~rlala~al~~~p  140 (204)
T cd03240          89 RSLAILENVIFC-------------HQG----ESNWPL----------LDMRG-RCSGGEKVLASLIIRLALAETFGSNC  140 (204)
T ss_pred             EEhhHhhceeee-------------chH----HHHHHH----------hcCcc-ccCccHHHHHHHHHHHHHHHHhccCC
Confidence            112333222110             001    111111          34444 499999996      78999999999


Q ss_pred             CEEEEeCcCcCCCHHHHH-HHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          243 DLAILDEIDSGLDVDALR-DVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       243 ~lLlLDEPtsgLD~~~~~-~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      +++||||||++||+..++ .+.++|+++.++ +.|||++||+++++. . +|++++|++
T Consensus       141 ~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~-~d~i~~l~~  197 (204)
T cd03240         141 GILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-A-ADHIYRVEK  197 (204)
T ss_pred             CEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-h-CCEEEEEee
Confidence            999999999999999999 999999998765 789999999998775 4 688888854

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.95  E-value=3.2e-27  Score=247.51  Aligned_cols=105  Identities=23%  Similarity=0.371  Sum_probs=92.9

Q ss_pred             HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 020520          203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI  279 (325)
Q Consensus       203 ~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIiv  279 (325)
                      .+.++.+++....+++.+.. |||||+||+.||++|+.+|   +++||||||+|||+..++.+++.|+++.++|.|||+|
T Consensus       811 l~~L~~vgL~~l~l~~~~~t-LSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii  889 (943)
T PRK00349        811 LQTLVDVGLGYIKLGQPATT-LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI  889 (943)
T ss_pred             HHHHHHCCCCcccccCCccc-CCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            45688889864345677664 9999999999999999999   9999999999999999999999999998778999999


Q ss_pred             eCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          280 THYRRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       280 tHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      |||++++. . +|+|++|      ++|+|++.|+++.
T Consensus       890 tH~~~~i~-~-aD~ii~Lgp~~G~~~G~Iv~~Gt~~e  924 (943)
T PRK00349        890 EHNLDVIK-T-ADWIIDLGPEGGDGGGEIVATGTPEE  924 (943)
T ss_pred             ecCHHHHH-h-CCEEEEecCCcCCCCCEEEEeCCHHH
Confidence            99999885 4 7999999      7999999998753

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=1.8e-29  Score=224.95  Aligned_cols=192  Identities=18%  Similarity=0.180  Sum_probs=120.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .|+++|.. .|++  +.+++++++     ++++|+||||||||||+++|.-.            +|.+....    + ..
T Consensus         5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~~~~----~-~~   59 (212)
T cd03274           5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRASKM----R-QK   59 (212)
T ss_pred             EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCHHHh----h-hh
Confidence            36788876 6753  678999987     89999999999999999999732            12111110    0 01


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHH----HhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNA----RRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      .+++++|+...++.+++.+........    .....+...... .......++++.+++. +..++.+. .||+|||||+
T Consensus        60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~v~~~~~~~~~~L~-~~~~~~~~-~lS~G~~~r~  136 (212)
T cd03274          60 KLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHN-RFLILQGEVEQIAQMP-KKSWKNIS-NLSGGEKTLS  136 (212)
T ss_pred             hHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCC-ceEEcCCcEEEeeccc-cccccchh-hcCHHHHHHH
Confidence            123334544444433322211110000    000001100000 0000012234455553 44555555 4999999999


Q ss_pred             HHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          233 EILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       233 ~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      +||||++.    +|+++||||||+|||+.++..+.+.|+++.+ +.|+|++||+.+. ..+ ||++++|..
T Consensus       137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~~~-~~~-~d~v~~~~~  204 (212)
T cd03274         137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRNNM-FEL-ADRLVGIYK  204 (212)
T ss_pred             HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcHHH-HHh-CCEEEEEEe
Confidence            99999974    4799999999999999999999999999864 5689999999654 455 799998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.8e-28  Score=235.02  Aligned_cols=200  Identities=24%  Similarity=0.266  Sum_probs=139.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ..-|.+++++..|+  ++.+|.+-++++..|..|||+|+||+|||||||+|+.        |.|.....+      .+.+
T Consensus        78 ~~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~~f~ve------qE~~  141 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVSGFHVE------QEVR  141 (582)
T ss_pred             ccceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcCccCch------hhee
Confidence            34688999999997  4789999999999999999999999999999999986        333222211      0000


Q ss_pred             hccEEEec--cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          155 LAGLFMSF--QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       155 ~~~i~~~~--Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                        +. +++  |+ .+-.++...+++.....     ... .....+   ....+|..+|+.++...++.. +||||=|-|+
T Consensus       142 --g~-~t~~~~~-~l~~D~~~~dfl~~e~~-----l~~-~~~l~e---i~~~~L~glGFt~emq~~pt~-slSGGWrMrl  207 (582)
T KOG0062|consen  142 --GD-DTEALQS-VLESDTERLDFLAEEKE-----LLA-GLTLEE---IYDKILAGLGFTPEMQLQPTK-SLSGGWRMRL  207 (582)
T ss_pred             --cc-chHHHhh-hhhccHHHHHHHHhhhh-----hhc-cchHHH---HHHHHHHhCCCCHHHHhcccc-ccCcchhhHH
Confidence              00 000  11 01112223333221100     000 001111   122278899998776667766 4999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDA  308 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~  308 (325)
                      +|||||..+||||||||||++||..+..++.+.|..+.   .|+|+||||..++..+| ..|+-+++-++- +.|+.
T Consensus       208 aLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHDr~FLn~V~-tdIIH~~~~kL~~YkGN~  280 (582)
T KOG0062|consen  208 ALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHDRNFLNTVC-TDIIHLENLKLDYYKGNY  280 (582)
T ss_pred             HHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEeccHHHHHHHH-HHHHHHhhhhhhhhcCcH
Confidence            99999999999999999999999999999999999874   69999999999999985 556666655552 33543

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=6.2e-28  Score=227.34  Aligned_cols=201  Identities=24%  Similarity=0.379  Sum_probs=151.6

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..|+|-+.||+|.|++ .++++++++|-|.--..+|||||||.||||||++|.|-  +.|+.|+.+-+-           
T Consensus       583 ~PPvLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk--l~P~~GE~RKnh-----------  648 (807)
T KOG0066|consen  583 NPPVLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK--LDPNDGELRKNH-----------  648 (807)
T ss_pred             CCCeeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcC--CCCCcchhhccc-----------
Confidence            5679999999999975 57899999999999999999999999999999999995  789999775432           


Q ss_pred             hhccEEEeccCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          154 SLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       154 ~~~~i~~~~Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                       +..|++-.|+..  +-...|..+++...++.       +       +..++..|-.+|+..+ .+.--...|||||+-|
T Consensus       649 -rL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl-------p-------yq~ARK~LG~fGL~sH-AHTikikdLSGGQKaR  712 (807)
T KOG0066|consen  649 -RLRIGWFDQHANEALNGEETPVEYLQRKFNL-------P-------YQEARKQLGTFGLASH-AHTIKIKDLSGGQKAR  712 (807)
T ss_pred             -eeeeechhhhhHHhhccccCHHHHHHHhcCC-------C-------hHHHHHHhhhhhhhhc-cceEeeeecCCcchHH
Confidence             123666555543  22223455555443321       1       1234556778888643 2222223599999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE-EcCc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK-TGDA  308 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~-~g~~  308 (325)
                      |++|-.-+..|+||||||||++||.++...+.+.|+++.   ..|||||||-+++....|. ++|+++-.|-+ +|+.
T Consensus       713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~VsHDeRLi~eT~C~-LwVvE~Q~i~eIdGdF  786 (807)
T KOG0066|consen  713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMVSHDERLIVETDCN-LWVVENQGIDEIDGDF  786 (807)
T ss_pred             HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEEecccceeeecCce-EEEEccCChhhccccH
Confidence            999999999999999999999999999999999999984   3799999999998877664 56666654432 3443

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=4.3e-27  Score=225.61  Aligned_cols=202  Identities=22%  Similarity=0.280  Sum_probs=158.7

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      ...|.+++.+|+|.|..+.-+++.+++++++.-+.++++|+||+||||++|++.|-  ..|..|.+.+.+.         
T Consensus       358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~--l~~~rgi~~~~~r---------  426 (582)
T KOG0062|consen  358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGD--LTPTRGIVGRHPR---------  426 (582)
T ss_pred             CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhcc--CCcccceeeeccc---------
Confidence            35679999999999976433789999999999999999999999999999999995  6788998776542         


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                         ..+++-+|...-+..+.+..+-.+.     .  ..+...++    .++..+..+|++.++....+. +||||||-||
T Consensus       427 ---~ri~~f~Qhhvd~l~~~v~~vd~~~-----~--~~pG~~~e----e~r~hl~~~Gl~g~la~~si~-~LSGGQKsrv  491 (582)
T KOG0062|consen  427 ---LRIKYFAQHHVDFLDKNVNAVDFME-----K--SFPGKTEE----EIRRHLGSFGLSGELALQSIA-SLSGGQKSRV  491 (582)
T ss_pred             ---ceecchhHhhhhHHHHHhHHHHHHH-----H--hCCCCCHH----HHHHHHHhcCCCchhhhcccc-ccCCcchhHH
Confidence               1245556765433222222111110     0  11112233    355668999998777777754 5999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      ++|.+...+|.+|+|||||++||.++...+.+.|+.+.   ..||+||||.+++... |+.+++.++|++..
T Consensus       492 afA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---GGVv~VSHd~~fi~~~-c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  492 AFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---GGVVLVSHDEEFISSL-CKELWVVEDGKVTP  559 (582)
T ss_pred             HHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---CcEEEEECcHHHHhhc-CceeEEEcCCcEEe
Confidence            99999999999999999999999999999999999883   3799999999999988 69999999999874

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.95  E-value=1.1e-26  Score=243.12  Aligned_cols=104  Identities=23%  Similarity=0.393  Sum_probs=91.3

Q ss_pred             HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHh---CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 020520          203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL---GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI  279 (325)
Q Consensus       203 ~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~---~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIiv  279 (325)
                      .+.++.+++....+++... +|||||+||+.||++|+.   +|+++||||||+|||+..++.+++.|+++.++|.|||+|
T Consensus       809 l~~L~~~gL~~l~l~~~~~-tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi  887 (924)
T TIGR00630       809 LQTLCDVGLGYIKLGQPAT-TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI  887 (924)
T ss_pred             HHHHHHcCCCchhhcCccc-cCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            4567788886334566665 499999999999999997   599999999999999999999999999998778999999


Q ss_pred             eCChhHHhhhCCcEEEEE------eCCEEEEEcCcc
Q 020520          280 THYRRLLEFIKPTFIHIM------EDGRIIKTGDAS  309 (325)
Q Consensus       280 tHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~  309 (325)
                      |||++++. . +|++++|      ++|+|++.|+++
T Consensus       888 ~H~~~~i~-~-aD~ii~Lgp~~G~~gG~iv~~G~~~  921 (924)
T TIGR00630       888 EHNLDVIK-T-ADYIIDLGPEGGDGGGTIVASGTPE  921 (924)
T ss_pred             eCCHHHHH-h-CCEEEEecCCccCCCCEEEEeCCHH
Confidence            99999885 4 7999999      799999999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.95  E-value=3.7e-27  Score=223.25  Aligned_cols=189  Identities=28%  Similarity=0.360  Sum_probs=140.8

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+++..++++.|++   ..|.-=.=+|..||+++++||||-||||++++|+|.  .+|++|.    ..+           
T Consensus       341 ~lv~y~~~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~--ikPdeg~----~~~-----------  400 (591)
T COG1245         341 TLVEYPDLKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGV--IKPDEGS----EED-----------  400 (591)
T ss_pred             eeeecchheeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhcc--ccCCCCC----Ccc-----------
Confidence            35566666666642   234444445677899999999999999999999997  7899997    111           


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..+.|-||--.--...|+.+++.......   +...        ..-.++++-+.+. +++++++.+ |||||.|||+||
T Consensus       401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~---~~~s--------~~~~ei~~pl~l~-~i~e~~v~~-LSGGELQRvaIa  467 (591)
T COG1245         401 LKVSYKPQYISPDYDGTVEDLLRSAIRSA---FGSS--------YFKTEIVKPLNLE-DLLERPVDE-LSGGELQRVAIA  467 (591)
T ss_pred             ceEeecceeecCCCCCcHHHHHHHhhhhh---cccc--------hhHHhhcCccchH-HHHhccccc-CCchhHHHHHHH
Confidence            12455566433223457777654432211   1110        0123456777775 678888875 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      .||.++++++|||||+|.||.+.+-.+.+.|+++..+ ++|.++|.||+-++..+ +||++|++
T Consensus       468 a~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyv-sDr~ivF~  530 (591)
T COG1245         468 AALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV-SDRLIVFE  530 (591)
T ss_pred             HHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhh-hceEEEEe
Confidence            9999999999999999999999999999999999754 78999999999998887 69998875

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=4.4e-27  Score=207.45  Aligned_cols=173  Identities=18%  Similarity=0.184  Sum_probs=117.5

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE--ECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV--FKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~--~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      .++++++++.+| +.+|+||||||||||+.+|...  .   .|+..  ..|..+..+-........+.+.|++...+.. 
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~--l---~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-   83 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIG--L---GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-   83 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHH--h---cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence            457788899887 8899999999999999998753  1   22221  1122111100000011235566666543320 


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH----HhCCCEEEE
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA----VLGADLAIL  247 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL----~~~p~lLlL  247 (325)
                                          ... ......+.++++.    .+..++.+. +||+|||||++||+|+    +.+|+++||
T Consensus        84 --------------------~~~-~~~~~~~~~~l~~----~~~~~~~~~-~lS~G~k~r~~ia~al~~~~~~~p~illl  137 (198)
T cd03276          84 --------------------PLC-VLSQDMARSFLTS----NKAAVRDVK-TLSGGERSFSTVCLLLSLWEVMESPFRCL  137 (198)
T ss_pred             --------------------cCC-HHHHHHHHHHhcc----ccccCCccc-ccChhHHHHHHHHHHHHHhcccCCCEEEe
Confidence                                000 0012334455554    234556665 4999999999999999    589999999


Q ss_pred             eCcCcCCCHHHHHHHHHHHHhccCC---CcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          248 DEIDSGLDVDALRDVAKAVNGLLTP---KNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       248 DEPtsgLD~~~~~~i~~~L~~l~~~---g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      ||||++||+..+..+.+.|.++.++   +.|||++||+++.+..+  |+|.+|+.++
T Consensus       138 DEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~--d~v~~~~~~~  192 (198)
T cd03276         138 DEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS--DDVKVFRMKD  192 (198)
T ss_pred             cCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc--cceeEEEecC
Confidence            9999999999999999999997543   35899999999998764  8999987643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=2.3e-27  Score=216.16  Aligned_cols=198  Identities=17%  Similarity=0.184  Sum_probs=121.2

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe-CCCCCHH-----
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN-LLEMEPE-----  151 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~-i~~~~~~-----  151 (325)
                      ++++|. ++|.+  ..     +|.+.++ +++|+||||||||||+.+|+++  ..+..|++...+.+ +-.....     
T Consensus         4 i~l~nf-~~~~~--~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~--l~~~~~~~r~~~~~~~i~~~~~~~~~~   72 (247)
T cd03275           4 LELENF-KSYKG--RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFV--LGEKSSHLRSKNLKDLIYRARVGKPDS   72 (247)
T ss_pred             EEEECc-cccCC--Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHH--hCCCcccccccchhhhcccCccccCCC
Confidence            667776 45532  11     2333444 9999999999999999999997  34556776654321 1000000     


Q ss_pred             HHhhccEEEeccCCccCC-CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc-------------c--
Q 020520          152 ERSLAGLFMSFQSPVEIP-GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD-------------F--  215 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------~--  215 (325)
                      ......+.+..|++.... .....+.. ..+.     ........    ..+.+.++.+++...             +  
T Consensus        73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~-~~~~-----ingk~~s~----~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~  142 (247)
T cd03275          73 NSAYVTAVYEDDDGEEKTFRRIITGGS-SSYR-----INGKVVSL----KEYNEELEKINILVKARNFLVFQGDVESIAS  142 (247)
T ss_pred             ceEEEEEEEEcCCCcEEEEEEEEECCc-eEEE-----ECCEEecH----HHHHHHHHHhCCCCCCCeEEEECCchhhhhh
Confidence            011122333334322100 00000000 0000     00001111    223455666776311             1  


Q ss_pred             ------ccccCCCCCChHHHHHHHHHHHHHhC----CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020520          216 ------LNRNVNEGFSGGERKRNEILQLAVLG----ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       216 ------~~~~~~~~LSgGqrQRv~iAraL~~~----p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~  285 (325)
                            .++.+. .||||||||++||+|++.+    |+++||||||++||+..+..+.+.|++++++|.+||+||||.++
T Consensus       143 ~~p~~~~~~~~~-~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~  221 (247)
T cd03275         143 KNPPGKRFRDMD-NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF  221 (247)
T ss_pred             ccCcchhhhhHH-HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH
Confidence                  112224 5999999999999999875    89999999999999999999999999998778899999999887


Q ss_pred             HhhhCCcEEEEEeC
Q 020520          286 LEFIKPTFIHIMED  299 (325)
Q Consensus       286 ~~~~~~d~i~vl~~  299 (325)
                      +. . ||++++|.+
T Consensus       222 ~~-~-~d~i~~~~~  233 (247)
T cd03275         222 FS-K-ADALVGVYR  233 (247)
T ss_pred             Hh-h-CCeEEEEEe
Confidence            64 4 688888753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.93  E-value=9.5e-25  Score=212.00  Aligned_cols=207  Identities=20%  Similarity=0.241  Sum_probs=144.7

Q ss_pred             CCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           73 KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      +...+|++++|+..=|+++..+++|+||+|.+|+-+.|.||||||||+|+|+|+|+  ++..+|++..-...-.      
T Consensus       429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL--Wp~~~G~l~k~~~~~~------  500 (659)
T KOG0060|consen  429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL--WPSTGGKLTKPTDGGP------  500 (659)
T ss_pred             cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc--cccCCCeEEecccCCC------
Confidence            34578999999999886556678899999999999999999999999999999998  6668999876443211      


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH-----HhHHHHHHhcCCcc-ccccccCCCCCCh
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-----AYLYPKLERLSMKT-DFLNRNVNEGFSG  226 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~-~~~~~~~~~~LSg  226 (325)
                         ..+.|+||.|..-.+ |..+-+-.+......  .....++++..     .++..++++.|--. ....... ..||+
T Consensus       501 ---~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~-dvLS~  573 (659)
T KOG0060|consen  501 ---KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWM-DVLSP  573 (659)
T ss_pred             ---CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHH-hhcCH
Confidence               347899999975433 433333222110000  00011122211     11222333333211 0111112 24999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      ||+||+++||.+.++|++-||||-||++|.+.+..+.+.+++.   |.|.|-|+|...+... . |.++-|+.
T Consensus       574 GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkSL~kf-H-d~~L~~~g  641 (659)
T KOG0060|consen  574 GEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKSLWKF-H-DYVLRMDG  641 (659)
T ss_pred             HHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHHHHhh-h-hEEEEecC
Confidence            9999999999999999999999999999999999999998765   8999999998776554 3 77777753

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.93  E-value=7.9e-25  Score=188.82  Aligned_cols=211  Identities=24%  Similarity=0.266  Sum_probs=150.1

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ....|++.++.|+|+.. -+++-|+|++++.|....++|.||||||||||+|+|-  .-...|.|.+.|.+.-.-+.-.-
T Consensus        10 ~~~aievsgl~f~y~~~-dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGK--hmv~~~~v~VlgrsaFhDt~l~~   86 (291)
T KOG2355|consen   10 SDFAIEVSGLQFKYKVS-DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGK--HMVGGGVVQVLGRSAFHDTSLES   86 (291)
T ss_pred             ccceEEEeccEEecccC-CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCc--ccccCCeEEEcCcCccccccccc
Confidence            35579999999999864 4899999999999999999999999999999999994  33345899999986533111000


Q ss_pred             hhccEEEec----------cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020520          154 SLAGLFMSF----------QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG  223 (325)
Q Consensus       154 ~~~~i~~~~----------Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  223 (325)
                       .....|.-          -+..+...+++...+..        .+-  ... +   +-+.+++.+.+.   +..+.+ .
T Consensus        87 -Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifg--------V~g--~dp-~---Rre~LI~iLDId---l~WRmH-k  147 (291)
T KOG2355|consen   87 -SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFG--------VGG--DDP-E---RREKLIDILDID---LRWRMH-K  147 (291)
T ss_pred             -cCceeEecccccccccccccccccccccHHHHHhh--------ccC--CCh-h---Hhhhhhhheecc---ceEEEe-e
Confidence             00011110          01111112333322211        111  111 1   222344555553   122333 4


Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      +|-|||+||.|++.|++.=++|+|||-|--||..++..+++.+++-.++ |.|||++||-.+-++.. +.+++.|.+|++
T Consensus       148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~W-pthl~yi~~Gkl  226 (291)
T KOG2355|consen  148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETW-PTHLVYIKSGKL  226 (291)
T ss_pred             ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhc-chhEEEecCCee
Confidence            9999999999999999999999999999999999999999999998754 88999999998888876 689999999999


Q ss_pred             EEEcC
Q 020520          303 IKTGD  307 (325)
Q Consensus       303 v~~g~  307 (325)
                      +..-+
T Consensus       227 ~~~l~  231 (291)
T KOG2355|consen  227 VDNLK  231 (291)
T ss_pred             eeccc
Confidence            86433

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=1.1e-23  Score=220.68  Aligned_cols=224  Identities=26%  Similarity=0.343  Sum_probs=175.0

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG  170 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~  170 (325)
                      ..+|+|+|.-+++|+.+.++||-|||||||+++++|-.. ..-..|+|.+||.+.....+    +..++|..|+...++.
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~----~~~~aY~~e~DvH~p~  203 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP----KKTVAYNSEQDVHFPE  203 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc----CceEEeccccccccce
Confidence            469999999999999999999999999999999999521 12235799999998876544    3457888999999999


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHH-hHHHHHHhcCCccccccccCC----CCCChHHHHHHHHHHHHHhCCCEE
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYA-YLYPKLERLSMKTDFLNRNVN----EGFSGGERKRNEILQLAVLGADLA  245 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~----~~LSgGqrQRv~iAraL~~~p~lL  245 (325)
                      +|+.+.+.+....+.......+..+.+... ..+.+++.+|++ +..+..++    .+.|||||+||.+|-+++.+++++
T Consensus       204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~-~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~  282 (1391)
T KOG0065|consen  204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLD-HCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL  282 (1391)
T ss_pred             eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCch-hhccceecccccccccCcccceeeeeeeeecCccee
Confidence            999998888765443222222233333222 344578889996 44554443    359999999999999999999999


Q ss_pred             EEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhH-HhhhCCcEEEEEeCCEEEEEcCccH-HHHHHhCCeec
Q 020520          246 ILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTGDASI-ATVLEEGGYKA  321 (325)
Q Consensus       246 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~-~~~~~~d~i~vl~~G~iv~~g~~~~-~~~~~~~~~~~  321 (325)
                      .+||+|.|||..+.-++.+.|+++.+. +.|++++-|.... +-.. -|.|++|.+|++++.|+.+. ....++.|+.+
T Consensus       283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~l-FD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~c  360 (1391)
T KOG0065|consen  283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDL-FDDVILLSEGYQIYQGPRDEVLPYFEDMGFKC  360 (1391)
T ss_pred             eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHh-hhheeeeeccceEEeccHHHHHHHHHhcCccC
Confidence            999999999999999999999999764 7788888887542 3333 48899999999999999874 46677777754

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.90  E-value=1e-23  Score=186.28  Aligned_cols=147  Identities=22%  Similarity=0.196  Sum_probs=105.9

Q ss_pred             ceeeeEEEEeCCC-EEEEEcCCCccHHHHHHHHh--------CCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccC
Q 020520           94 ILKGVNLLVNEGE-VHAIMGKNGSGKSTLSKVLV--------GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS  164 (325)
Q Consensus        94 iL~~vsl~i~~Ge-~~~lvG~NGsGKSTLl~~l~--------Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~  164 (325)
                      .+.++||++.+|+ +++|+||||||||||+|+|+        |.  +-|....+                  .+++..|.
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~--~vp~~~~~------------------~~~~~~~~   75 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGL--PIPAAEGS------------------SLPVFENI   75 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCC--Cccccccc------------------cCcCccEE
Confidence            4667999999995 79999999999999999998        43  22221100                  01111111


Q ss_pred             CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCE
Q 020520          165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADL  244 (325)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l  244 (325)
                      ..                                         .++.. +..+.... .+|+||+|++.|++++ .+|++
T Consensus        76 ~~-----------------------------------------~lg~~-~~l~~~~s-~fs~g~~~~~~i~~~~-~~p~l  111 (200)
T cd03280          76 FA-----------------------------------------DIGDE-QSIEQSLS-TFSSHMKNIARILQHA-DPDSL  111 (200)
T ss_pred             EE-----------------------------------------ecCch-hhhhcCcc-hHHHHHHHHHHHHHhC-CCCcE
Confidence            10                                         00000 11222233 4999999999999884 89999


Q ss_pred             EEEeCcCcCCCHHHHHHHH-HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          245 AILDEIDSGLDVDALRDVA-KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       245 LlLDEPtsgLD~~~~~~i~-~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      +|+||||+|||+..+..+. ..++++.+.+.++|++||+.++. .. +|++.+|++|+++.++
T Consensus       112 lllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~-~~-~d~~~~l~~g~l~~~~  172 (200)
T cd03280         112 VLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELK-AY-AYKREGVENASMEFDP  172 (200)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHH-HH-HhcCCCeEEEEEEEec
Confidence            9999999999999999996 46777766688999999996544 45 5899999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.90  E-value=8.5e-23  Score=182.12  Aligned_cols=86  Identities=20%  Similarity=0.188  Sum_probs=69.7

Q ss_pred             ccccCCCCCChHHHHHHHHHHHH----HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-C-cEEEEEeCChhHHhhh
Q 020520          216 LNRNVNEGFSGGERKRNEILQLA----VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-K-NSLLMITHYRRLLEFI  289 (325)
Q Consensus       216 ~~~~~~~~LSgGqrQRv~iAraL----~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvIivtHd~~~~~~~  289 (325)
                      .+..+. .||||||||+.+|++|    +.+|+++|+||||++||+.+++.+++.|.++.++ | .|+|++|||+......
T Consensus       120 ~~~~~~-~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~  198 (213)
T cd03277         120 QELDPH-HQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY  198 (213)
T ss_pred             cccchh-hccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence            344444 4999999999887655    4799999999999999999999999999998765 5 4899999997666554


Q ss_pred             C-CcEEEEEeCCEE
Q 020520          290 K-PTFIHIMEDGRI  302 (325)
Q Consensus       290 ~-~d~i~vl~~G~i  302 (325)
                      + ..+|++|++|+-
T Consensus       199 ~~~~~v~~l~~g~~  212 (213)
T cd03277         199 HEKMTVLCVYNGPH  212 (213)
T ss_pred             cCceEEEEEecCcc
Confidence            2 347888888863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.89  E-value=3.8e-23  Score=194.17  Aligned_cols=184  Identities=22%  Similarity=0.381  Sum_probs=141.3

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC------CCCCCCccEEEECCEeCCCCCHHHHhhccEEEecc--
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH------PDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQ--  163 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl------~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q--  163 (325)
                      ..+|+|+||+|++|++++|+|+||||||||+++|+|.      ..|+|++|.|.+--..+..            ++|-  
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a------------~iPge~  463 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA------------LIPGEY  463 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhh------------ccCccc
Confidence            4589999999999999999999999999999999994      2478999998875332211            1221  


Q ss_pred             CCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC
Q 020520          164 SPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD  243 (325)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~  243 (325)
                      +|. |...+.++.+..       ..++.        ..+.++|.+.|+....+.+...+.||-|||.|+-||+++...|.
T Consensus       464 Ep~-f~~~tilehl~s-------~tGD~--------~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn  527 (593)
T COG2401         464 EPE-FGEVTILEHLRS-------KTGDL--------NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPN  527 (593)
T ss_pred             ccc-cCchhHHHHHhh-------ccCch--------hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCC
Confidence            121 222233322211       11211        23456788999976655555445699999999999999999999


Q ss_pred             EEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          244 LAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       244 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      +++.||-.|+||+.+...+..-|.+++++ |.|++++||+.++...+..|.++.+.-|...
T Consensus       528 ~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         528 VLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             cEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            99999999999999999999999999855 8999999999999998888998887766653

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.89  E-value=5.2e-23  Score=195.19  Aligned_cols=201  Identities=23%  Similarity=0.357  Sum_probs=130.5

Q ss_pred             EEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEe
Q 020520           82 GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS  161 (325)
Q Consensus        82 ~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~  161 (325)
                      ++..+|+.++ ..|..+- ...+|.++||+|+||-||||-+|+|+|.  ..|.=|+-  ++.  ..+..-..+..+  --
T Consensus        79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGe--l~PNLG~~--~~p--p~wdeVi~~FrG--tE  148 (591)
T COG1245          79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGE--LKPNLGRY--EDP--PSWDEVIKRFRG--TE  148 (591)
T ss_pred             cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCc--cccCCCCC--CCC--CCHHHHHHHhhh--hH
Confidence            3566786432 2222221 3478999999999999999999999996  56766632  221  111111111111  00


Q ss_pred             ccCCc--cCCC-c---chHHHHHHHHHHHhhhcCCC-C-CChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          162 FQSPV--EIPG-V---NNIDFLHMAYNARRRKLGQP-E-IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       162 ~Q~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      .|+..  ++.+ +   .-.+++...-...   .+.- + ....+......++++++++. +.+++.+.+ |||||-||++
T Consensus       149 Lq~YF~~l~~g~~r~v~K~QYVd~iPk~~---KG~v~elLk~~de~g~~devve~l~L~-nvl~r~v~~-LSGGELQr~a  223 (591)
T COG1245         149 LQNYFKKLYEGELRAVHKPQYVDLIPKVV---KGKVGELLKKVDERGKFDEVVERLGLE-NVLDRDVSE-LSGGELQRVA  223 (591)
T ss_pred             HHHHHHHHHcCCcceecchHHHHHHHHHh---cchHHHHHHhhhhcCcHHHHHHHhcch-hhhhhhhhh-cCchHHHHHH
Confidence            01110  0000 0   0001111110000   0000 0 00011113466788999996 688999975 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      ||.|++++++++++|||||-||...+-...+.++++.+.+++||+|.||+..+..+ +|.|.++.
T Consensus       224 Iaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~l-sD~vhI~Y  287 (591)
T COG1245         224 IAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYL-SDFVHILY  287 (591)
T ss_pred             HHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHh-hheeEEEe
Confidence            99999999999999999999999999999999999988789999999999988877 69998886

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.88  E-value=5.7e-22  Score=172.03  Aligned_cols=74  Identities=22%  Similarity=0.309  Sum_probs=67.5

Q ss_pred             CChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          224 FSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       224 LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      |||||+||++|||+++    .+|+++|+|||+++||+..++.+.+.|.++.++|.|+|++||+++.+. . +|+++.+.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~-adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-N-ADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-h-CCeEEEEEE
Confidence            9999999999999996    699999999999999999999999999998766789999999998775 3 699988764

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.1e-22  Score=192.13  Aligned_cols=220  Identities=19%  Similarity=0.245  Sum_probs=150.1

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC-CCCCCCccEEEECCEeCCCCC-HHH-
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH-PDYEVTEGSVVFKGENLLEME-PEE-  152 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl-~~~~p~~G~I~~~g~~i~~~~-~~~-  152 (325)
                      .-|.++|.+.+-.  ++.++.|.|+.|-.|..|+||||||-||||||+-|+.- +.++| .=.|++..+.+..-+ ... 
T Consensus       263 ~DIKiEnF~ISA~--Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~  339 (807)
T KOG0066|consen  263 MDIKIENFDISAQ--GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAID  339 (807)
T ss_pred             ccceeeeeeeecc--cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHH
Confidence            3588999988764  46799999999999999999999999999999999873 12333 334555554432111 000 


Q ss_pred             ---Hh-hccEEEeccCC-----ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020520          153 ---RS-LAGLFMSFQSP-----VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG  223 (325)
Q Consensus       153 ---~~-~~~i~~~~Q~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  223 (325)
                         +. .....+.-...     ..-...++.+.+.-.+...+ ..+.     .....+++.+|..+|++.+.-+++.. .
T Consensus       340 tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELr-aiGA-----~sAEarARRILAGLGFskEMQ~rPt~-k  412 (807)
T KOG0066|consen  340 TVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELR-AIGA-----DSAEARARRILAGLGFSKEMQERPTT-K  412 (807)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH-Hhcc-----ccchhHHHHHHhhcCCChhHhcCCcc-c
Confidence               00 00000000000     00111233333332222111 1111     12234567788999998776666665 5


Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      +|||-|.||+|||||..+|-+|.|||||++||....-++-++|..|+   +|++|||||..++..+| ..|+-|++-++.
T Consensus       413 FSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgFLD~VC-tdIIHLD~qkLh  488 (807)
T KOG0066|consen  413 FSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGFLDSVC-TDIIHLDNQKLH  488 (807)
T ss_pred             cCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccchHHHHH-HHHhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999885   69999999999999985 567788887775


Q ss_pred             E-EcCcc
Q 020520          304 K-TGDAS  309 (325)
Q Consensus       304 ~-~g~~~  309 (325)
                      + .|+..
T Consensus       489 yYrGNY~  495 (807)
T KOG0066|consen  489 YYRGNYT  495 (807)
T ss_pred             hhcchHH
Confidence            3 45543

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.87  E-value=7.1e-22  Score=182.91  Aligned_cols=76  Identities=28%  Similarity=0.350  Sum_probs=66.8

Q ss_pred             CCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          223 GFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      .|||||+||++||++++.    +|+++||||||++||+..+..+.+.|+++.+ +.|+|++||++... .. +|++++|.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~-~~-~d~~~~l~  246 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVA-AM-ADNHFLVE  246 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHH-Hh-cCcEEEEE
Confidence            499999999999997654    9999999999999999999999999999864 67999999999865 44 68888887


Q ss_pred             CCE
Q 020520          299 DGR  301 (325)
Q Consensus       299 ~G~  301 (325)
                      +|.
T Consensus       247 ~~~  249 (276)
T cd03241         247 KEV  249 (276)
T ss_pred             Eec
Confidence            764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.86  E-value=8e-22  Score=168.49  Aligned_cols=75  Identities=31%  Similarity=0.425  Sum_probs=67.4

Q ss_pred             CCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          223 GFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      +||+||+||++||++|..    +|+++|+|||++|+|+..+..+.+.+.++.+++.++|++||+.++...  +|+++.|+
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~--~d~~~~l~  154 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL--ADKLIHIK  154 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh--hhhEEEEE
Confidence            399999999999999987    789999999999999999999999999886557899999999998865  58888885


Q ss_pred             C
Q 020520          299 D  299 (325)
Q Consensus       299 ~  299 (325)
                      .
T Consensus       155 ~  155 (162)
T cd03227         155 K  155 (162)
T ss_pred             E
Confidence            3

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.86  E-value=5.3e-21  Score=184.10  Aligned_cols=186  Identities=24%  Similarity=0.302  Sum_probs=126.6

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      -|.++|+-+--+. +..++..++|+|++|-.+.|+||||||||+|+|+|.|+  ++...|...+-        +    ..
T Consensus       481 gI~lenIpvItP~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL--WPvy~g~L~~P--------~----~~  545 (728)
T KOG0064|consen  481 GIILENIPVITPA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL--WPVYNGLLSIP--------R----PN  545 (728)
T ss_pred             ceEEecCceeccC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc--CcccCCeeecC--------C----Cc
Confidence            3888888887775 45688999999999999999999999999999999997  55555544321        1    12


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHH---HHHhhhcCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAY---NARRRKLGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      .+.|+||.|+.- .-|..+.+-.+-   ..+.+  +   ..+.+....     ++.++++-+- .+.....-. -|||||
T Consensus       546 ~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~k--g---~~d~dL~~iL~~v~L~~i~qr~~g-~da~~dWkd-~LsgGe  617 (728)
T KOG0064|consen  546 NIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRK--G---YTDQDLEAILDIVHLEHILQREGG-WDAVRDWKD-VLSGGE  617 (728)
T ss_pred             ceEeccCCCccC-cCcccceeecCCcHHHHHhc--C---CCHHHHHHHHHHhhHHHHHHhccC-hhhhccHHh-hccchH
Confidence            378999999643 112221111100   01111  1   112221111     1122222211 111111222 499999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF  288 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~  288 (325)
                      |||+++||.+.++|+.-+|||-||+..+..+..+.+..++.   |.+.|-|||.+.+...
T Consensus       618 kQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~---gi~llsithrpslwk~  674 (728)
T KOG0064|consen  618 KQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA---GISLLSITHRPSLWKY  674 (728)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc---CceEEEeecCccHHHH
Confidence            99999999999999999999999999999999999988764   8999999999987654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.85  E-value=2.7e-20  Score=203.52  Aligned_cols=107  Identities=22%  Similarity=0.262  Sum_probs=93.2

Q ss_pred             HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEE
Q 020520          202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG---ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLM  278 (325)
Q Consensus       202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~---p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIi  278 (325)
                      ..+.|..+|+++=.+.++.. +|||||.||+-||.-|..+   +.++||||||.||++...+.+++.|++|.+.|.|||+
T Consensus      1679 ~L~~L~~vGLgYl~LGq~~~-tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635       1679 PLQALIDNGLGYLPLGQNLS-SLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred             HHHHHHHcCCCeeeCCCcCC-ccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence            34567889998655556665 5999999999999999865   7899999999999999999999999999988999999


Q ss_pred             EeCChhHHhhhCCcEEEEE------eCCEEEEEcCccHH
Q 020520          279 ITHYRRLLEFIKPTFIHIM------EDGRIIKTGDASIA  311 (325)
Q Consensus       279 vtHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~~  311 (325)
                      |+||++++..  ||+|+-|      ..|+|++.|+|+..
T Consensus      1758 ieH~~~~i~~--aD~iidlgp~gG~~GG~iva~Gtp~~i 1794 (1809)
T PRK00635       1758 IDHDPALLKQ--ADYLIEMGPGSGKTGGKILFSGPPKDI 1794 (1809)
T ss_pred             EeCCHHHHHh--CCEEEEcCCCcccCCCEEEEEeCHHHH
Confidence            9999999886  6999877      35899999999753

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.84  E-value=3.5e-21  Score=169.98  Aligned_cols=140  Identities=17%  Similarity=0.124  Sum_probs=93.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +.+++|++|+.  |++++|+||||||||||+|+|+|.. +      +.+.|.++...          .+++|...+|+.+
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~-~------l~~~G~~v~a~----------~~~~q~~~l~~~~   74 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV-I------LAQAGAPVCAS----------SFELPPVKIFTSI   74 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH-H------HHHcCCEEecC----------ccCcccceEEEec
Confidence            45778777765  7999999999999999999999852 1      22344443221          1335654566666


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID  251 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt  251 (325)
                      ++.+++......          ...+. .++.++++.++.                            .+|+++|+||||
T Consensus        75 ~~~d~l~~~~s~----------~~~e~-~~~~~iL~~~~~----------------------------~~p~llllDEp~  115 (199)
T cd03283          75 RVSDDLRDGISY----------FYAEL-RRLKEIVEKAKK----------------------------GEPVLFLLDEIF  115 (199)
T ss_pred             cchhccccccCh----------HHHHH-HHHHHHHHhccC----------------------------CCCeEEEEeccc
Confidence            666554332110          00111 223333433320                            599999999999


Q ss_pred             cCCCHHHHHHHH-HHHHhccCCCcEEEEEeCChhHHhhh
Q 020520          252 SGLDVDALRDVA-KAVNGLLTPKNSLLMITHYRRLLEFI  289 (325)
Q Consensus       252 sgLD~~~~~~i~-~~L~~l~~~g~tvIivtHd~~~~~~~  289 (325)
                      +|+|+.....+. .+++++.+.+.|+|++||+++++...
T Consensus       116 ~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~  154 (199)
T cd03283         116 KGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL  154 (199)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence            999999988775 46777766688999999999988654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.83  E-value=1.2e-20  Score=169.17  Aligned_cols=153  Identities=21%  Similarity=0.145  Sum_probs=107.2

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +.+.+|+++++.+|++++|.||||+|||||+++++=.                      ....+.+. ++|.+...++  
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~----------------------~~la~~g~-~vpa~~~~~~--   71 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI----------------------VLMAQIGC-FVPCDSADIP--   71 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH----------------------HHHHHhCC-CcCcccEEEe--
Confidence            5689999999999999999999999999999998721                      00111111 2333221110  


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH--HhCCCEEEEeC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA--VLGADLAILDE  249 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL--~~~p~lLlLDE  249 (325)
                                                   .+.+++.++++... .   . ..+|.|++|++.+++++  +.+|+++||||
T Consensus        72 -----------------------------~~~~il~~~~l~d~-~---~-~~lS~~~~e~~~~a~il~~~~~~sLvLLDE  117 (222)
T cd03285          72 -----------------------------IVDCILARVGASDS-Q---L-KGVSTFMAEMLETAAILKSATENSLIIIDE  117 (222)
T ss_pred             -----------------------------ccceeEeeeccccc-h---h-cCcChHHHHHHHHHHHHHhCCCCeEEEEec
Confidence                                         01112344454321 1   2 35999999999999999  89999999999


Q ss_pred             c---CcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          250 I---DSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       250 P---tsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      |   |++||+.+..+..  ++.+.+ .+.++|++||+. .+..+ +|++..+++|++...+.
T Consensus       118 p~~gT~~lD~~~~~~~i--l~~l~~~~~~~vlisTH~~-el~~~-~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         118 LGRGTSTYDGFGLAWAI--AEYIATQIKCFCLFATHFH-ELTAL-ADEVPNVKNLHVTALTD  175 (222)
T ss_pred             CcCCCChHHHHHHHHHH--HHHHHhcCCCeEEEEechH-HHHHH-hhcCCCeEEEEEEEEEe
Confidence            9   9999998886543  233332 478999999974 45555 58888899999876653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.83  E-value=3.7e-19  Score=178.94  Aligned_cols=106  Identities=22%  Similarity=0.360  Sum_probs=91.2

Q ss_pred             HHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 020520          204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT  280 (325)
Q Consensus       204 ~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivt  280 (325)
                      +.|..+|+++=.+-++. .+|||||.|||-||.-|..+.   -++||||||.||-..-.+.+++.|.+|...|.|||+|.
T Consensus       804 qtL~dVGLgYi~LGQpa-tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE  882 (935)
T COG0178         804 QTLVDVGLGYIKLGQPA-TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE  882 (935)
T ss_pred             HHHHHcCcceEecCCcc-ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            45677888754444444 459999999999999999887   99999999999999999999999999999999999999


Q ss_pred             CChhHHhhhCCcEEEEE------eCCEEEEEcCccHHH
Q 020520          281 HYRRLLEFIKPTFIHIM------EDGRIIKTGDASIAT  312 (325)
Q Consensus       281 Hd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~~~  312 (325)
                      |+++.+..  ||+|+=|      ..|+|++.|+|+...
T Consensus       883 HNLdVIk~--AD~IIDLGPeGG~~GG~iva~GTPeeva  918 (935)
T COG0178         883 HNLDVIKT--ADWIIDLGPEGGDGGGEIVASGTPEEVA  918 (935)
T ss_pred             cccceEee--cCEEEEcCCCCCCCCceEEEecCHHHHH
Confidence            99998875  6998776      468999999997543

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.82  E-value=9.8e-20  Score=168.11  Aligned_cols=76  Identities=14%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC--C
Q 020520          223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK--P  291 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~--~  291 (325)
                      .+|+||+|+++||++|+         .+|+++||||||++||+..++.+.+.|.++.    .+++++|+.+.+..++  .
T Consensus       183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~~~~  258 (270)
T cd03242         183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALWLRR  258 (270)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchhccC
Confidence            38999999999999985         6999999999999999999999999998763    3566666666665542  3


Q ss_pred             cEEEEEeCCEE
Q 020520          292 TFIHIMEDGRI  302 (325)
Q Consensus       292 d~i~vl~~G~i  302 (325)
                      .+++.+++|++
T Consensus       259 ~~i~~l~~g~i  269 (270)
T cd03242         259 AQIFRVDAGTL  269 (270)
T ss_pred             ccEEEEeCcEE
Confidence            57888999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.82  E-value=4.2e-20  Score=163.35  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=65.8

Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH-HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK-AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      .+|++++| +..+.+++.+|+++|+||||+|+|+.....+.. +++.+.+.+.++|++||+.+++..  ++++..+..|+
T Consensus        91 ~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~--~~~~~~l~~~~  167 (202)
T cd03243          91 TFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADL--PEQVPGVKNLH  167 (202)
T ss_pred             eHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH--hhcCCCeEEEE
Confidence            37777665 666677889999999999999999998887765 466666668899999999888775  36777788888


Q ss_pred             EEEEcCc
Q 020520          302 IIKTGDA  308 (325)
Q Consensus       302 iv~~g~~  308 (325)
                      +...+..
T Consensus       168 ~~~~~~~  174 (202)
T cd03243         168 MEELITT  174 (202)
T ss_pred             EEEEecC
Confidence            8877653

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.81  E-value=8.3e-20  Score=161.72  Aligned_cols=141  Identities=23%  Similarity=0.314  Sum_probs=96.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +.+.+|++|++++|++++|+||||+|||||+++++++.                      .+.+.+. ++   |..+..+
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~G~-~v---pa~~~~l   69 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA----------------------IMAQIGC-FV---PAEYATL   69 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH----------------------HHHHcCC-Cc---chhhcCc
Confidence            57899999999999999999999999999999999851                      1111111 11   1111111


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID  251 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt  251 (325)
                      +..+.+                            +..++.. +...+..+ .+|+|++|+ ..+.+++.+|+++|||||+
T Consensus        70 ~~~d~I----------------------------~~~~~~~-d~~~~~~S-~fs~e~~~~-~~il~~~~~~~lvllDE~~  118 (204)
T cd03282          70 PIFNRL----------------------------LSRLSND-DSMERNLS-TFASEMSET-AYILDYADGDSLVLIDELG  118 (204)
T ss_pred             cChhhe----------------------------eEecCCc-cccchhhh-HHHHHHHHH-HHHHHhcCCCcEEEecccc
Confidence            221111                            1122221 11223333 499999976 4556688999999999999


Q ss_pred             cCCCHHHHHHH-HHHHHhccCCCcEEEEEeCChhHHhhh
Q 020520          252 SGLDVDALRDV-AKAVNGLLTPKNSLLMITHYRRLLEFI  289 (325)
Q Consensus       252 sgLD~~~~~~i-~~~L~~l~~~g~tvIivtHd~~~~~~~  289 (325)
                      +|+|+.....+ ...+..+.+.+.++|++||+.+++...
T Consensus       119 ~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~  157 (204)
T cd03282         119 RGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAIL  157 (204)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence            99999765554 455666666688999999999988765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.81  E-value=9.1e-20  Score=191.61  Aligned_cols=103  Identities=21%  Similarity=0.308  Sum_probs=92.2

Q ss_pred             HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020520          205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY  282 (325)
Q Consensus       205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd  282 (325)
                      .++.+|+..-.+++.+.+ |||||+|||+||+||+.+|  ++|||||||+|||+...+.++++|+++++.|.|||+|+||
T Consensus       472 ~L~~vGL~~l~l~r~~~~-LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~  550 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD  550 (943)
T ss_pred             HhhccccCCCCCCCchhh-CCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            678888863226788775 9999999999999999997  9999999999999999999999999998779999999999


Q ss_pred             hhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          283 RRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       283 ~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      ++++. . ||+|++|      ++|+|++.|+++.
T Consensus       551 ~~~i~-~-aD~vi~LgpgaG~~~G~iv~~g~~~e  582 (943)
T PRK00349        551 EDTIR-A-ADYIVDIGPGAGVHGGEVVASGTPEE  582 (943)
T ss_pred             HHHHH-h-CCEEEEeccccCCCCCEEeeccCHHH
Confidence            99886 4 7999999      9999999998754

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.81  E-value=1.7e-19  Score=189.16  Aligned_cols=103  Identities=19%  Similarity=0.295  Sum_probs=91.1

Q ss_pred             HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020520          205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY  282 (325)
Q Consensus       205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd  282 (325)
                      .+..+|+..-.+++.+.+ |||||+|||.||+||+.+|  ++|||||||+|||+...+.++++|++++++|.|||+|+||
T Consensus       470 ~L~~vgL~~l~l~r~~~t-LSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd  548 (924)
T TIGR00630       470 FLIDVGLDYLTLSRAAGT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD  548 (924)
T ss_pred             hHhhccccccccCCCcCc-CCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            467788853225777764 9999999999999999986  8999999999999999999999999998789999999999


Q ss_pred             hhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          283 RRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       283 ~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      ++++. . ||+|++|      ++|+|++.|+++.
T Consensus       549 ~~~i~-~-aD~vi~LgpgaG~~~G~Iv~~g~~~e  580 (924)
T TIGR00630       549 EETIR-A-ADYVIDIGPGAGIHGGEVVASGTPEE  580 (924)
T ss_pred             HHHHh-h-CCEEEEecccccCCCCEEeeccCHHH
Confidence            99886 4 7999999      8999999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.74  E-value=1.6e-17  Score=156.92  Aligned_cols=182  Identities=19%  Similarity=0.309  Sum_probs=124.9

Q ss_pred             EEECCCcccceeeeEEEEeCCC-----EEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccE
Q 020520           85 AVIAESKQEILKGVNLLVNEGE-----VHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGL  158 (325)
Q Consensus        85 ~~y~~~~~~iL~~vsl~i~~Ge-----~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i  158 (325)
                      ++|++ .+..+.+..|.|+.|+     ++..+|+||.|||||+++++|.  .+|++| +|-...               +
T Consensus       343 y~Yp~-m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~--~~pd~~~e~p~ln---------------V  404 (592)
T KOG0063|consen  343 YSYPK-MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGR--LKPDEGGEIPVLN---------------V  404 (592)
T ss_pred             eccCc-ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcC--CCCCccCcccccc---------------e
Confidence            44664 3556788899999885     7899999999999999999996  567765 332222               2


Q ss_pred             EEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH
Q 020520          159 FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA  238 (325)
Q Consensus       159 ~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL  238 (325)
                      .|-+|...--...++...+..-.+.   .+..     .   .-+.+.++-+.++ +..++.+. +|||||.|||+||.+|
T Consensus       405 SykpqkispK~~~tvR~ll~~kIr~---ay~~-----p---qF~~dvmkpL~ie-~i~dqevq-~lSggelQRval~KOG  471 (592)
T KOG0063|consen  405 SYKPQKISPKREGTVRQLLHTKIRD---AYMH-----P---QFVNDVMKPLQIE-NIIDQEVQ-GLSGGELQRVALALCL  471 (592)
T ss_pred             eccccccCccccchHHHHHHHHhHh---hhcC-----H---HHHHhhhhhhhHH-HHHhHHhh-cCCchhhHHHHHHHhc
Confidence            2323332111112344333221110   0000     0   1123344555553 45666665 4999999999999999


Q ss_pred             HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      =..+++++.|||.+-||.+.+......++++. ..++|-.+|.||.-.+... +||+++.+
T Consensus       472 GKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYl-adrvivf~  531 (592)
T KOG0063|consen  472 GKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVFE  531 (592)
T ss_pred             CCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhh-cceeEEEe
Confidence            99999999999999999999998888888874 4467889999987766665 79998764

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.69  E-value=9.1e-17  Score=143.60  Aligned_cols=147  Identities=18%  Similarity=0.193  Sum_probs=90.1

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +.+.++++|++.+ ++++|+||||||||||+|+++++. +-...|.      .+   +.. .  ..+.++.|   +++.+
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~-~l~~~g~------~v---p~~-~--~~i~~~~~---i~~~~   80 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA-LLAQIGS------FV---PAS-K--AEIGVVDR---IFTRI   80 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH-HHhccCC------ee---ccc-c--ceecceee---EeccC
Confidence            4588999999987 999999999999999999998852 1112221      11   001 0  11222211   11111


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH----HHHHHHHHH--hCCCEE
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK----RNEILQLAV--LGADLA  245 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ----Rv~iAraL~--~~p~lL  245 (325)
                      ++.                                               +++|.|+.+    ++.|++++.  .+|+++
T Consensus        81 ~~~-----------------------------------------------~~ls~g~s~f~~e~~~l~~~l~~~~~~~ll  113 (216)
T cd03284          81 GAS-----------------------------------------------DDLAGGRSTFMVEMVETANILNNATERSLV  113 (216)
T ss_pred             Cch-----------------------------------------------hhhccCcchHHHHHHHHHHHHHhCCCCeEE
Confidence            110                                               124444433    344666654  699999


Q ss_pred             EEeCc---CcCCCHHHH-HHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          246 ILDEI---DSGLDVDAL-RDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       246 lLDEP---tsgLD~~~~-~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      |||||   |+++|.... ..+++.|   .+. +.++|++||+.++.. + ++++..+++|++...+.
T Consensus       114 llDEp~~gt~~lD~~~~~~~il~~l---~~~~~~~vi~~TH~~~l~~-l-~~~~~~v~~~~~~~~~~  175 (216)
T cd03284         114 LLDEIGRGTSTYDGLSIAWAIVEYL---HEKIGAKTLFATHYHELTE-L-EGKLPRVKNFHVAVKEK  175 (216)
T ss_pred             EEecCCCCCChHHHHHHHHHHHHHH---HhccCCcEEEEeCcHHHHH-H-hhcCCCeEEEEEEEEee
Confidence            99999   999998653 3334444   444 679999999976554 4 46655566777665443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.69  E-value=2.9e-16  Score=144.47  Aligned_cols=135  Identities=16%  Similarity=0.152  Sum_probs=86.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH-HHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP-EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR  184 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~-~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~  184 (325)
                      .-++|+||||||||||+++|+|+  +.|++|+|.++|+++...+. .+... .+.+++|+. ....+++           
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~--~~~~~G~i~~~g~~v~~~d~~~ei~~-~~~~~~q~~-~~~r~~v-----------  176 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARI--LSTGISQLGLRGKKVGIVDERSEIAG-CVNGVPQHD-VGIRTDV-----------  176 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCc--cCCCCceEEECCEEeecchhHHHHHH-Hhccccccc-ccccccc-----------
Confidence            56899999999999999999998  67899999999999865432 22221 233444432 1111111           


Q ss_pred             hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH
Q 020520          185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK  264 (325)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~  264 (325)
                                                     ++        +=.|.....+.+.+++|+++|+|||++      .+.+..
T Consensus       177 -------------------------------~~--------~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~  211 (270)
T TIGR02858       177 -------------------------------LD--------GCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEA  211 (270)
T ss_pred             -------------------------------cc--------cchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHH
Confidence                                           00        001111123333346999999999974      333444


Q ss_pred             HHHhccCCCcEEEEEeCChhHHhh------------hCCcEEEEEeCCE
Q 020520          265 AVNGLLTPKNSLLMITHYRRLLEF------------IKPTFIHIMEDGR  301 (325)
Q Consensus       265 ~L~~l~~~g~tvIivtHd~~~~~~------------~~~d~i~vl~~G~  301 (325)
                      +++.+. .|.++|++||+......            -.++|+++|++|+
T Consensus       212 l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~  259 (270)
T TIGR02858       212 LLEALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK  259 (270)
T ss_pred             HHHHHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence            555443 58899999998665221            2269999998776

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK00064 recF recombination protein F; Reviewed

Probab=99.68  E-value=3.6e-15  Score=143.14  Aligned_cols=77  Identities=22%  Similarity=0.181  Sum_probs=65.9

Q ss_pred             CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC-Cc
Q 020520          223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK-PT  292 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~-~d  292 (325)
                      .+|.||+|+++||++|+         .+|+|||||||+++||+..++.+.+.|.++   +..++++||+.+.+...+ .+
T Consensus       273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~~~~  349 (361)
T PRK00064        273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLLENA  349 (361)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhhccC
Confidence            48999999999999996         699999999999999999999999999765   347899999887665542 35


Q ss_pred             EEEEEeCCEE
Q 020520          293 FIHIMEDGRI  302 (325)
Q Consensus       293 ~i~vl~~G~i  302 (325)
                      +++.+++|++
T Consensus       350 ~i~~v~~G~i  359 (361)
T PRK00064        350 KIFHVEQGKI  359 (361)
T ss_pred             cEEEEeCCEE
Confidence            7888999987

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.65  E-value=3.7e-16  Score=136.34  Aligned_cols=62  Identities=23%  Similarity=0.259  Sum_probs=48.5

Q ss_pred             CCChHHHHHHHHHHHHHh--CCCEEEEeCcCcCCCHHHHHHHH-HHHHhccCC-CcEEEEEeCChhHHh
Q 020520          223 GFSGGERKRNEILQLAVL--GADLAILDEIDSGLDVDALRDVA-KAVNGLLTP-KNSLLMITHYRRLLE  287 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~--~p~lLlLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvIivtHd~~~~~  287 (325)
                      .||+|++|   +++++..  +|+++|+|||++|+|+.....+. .+++.+.++ +.++|++||+.++..
T Consensus        61 ~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~  126 (185)
T smart00534       61 TFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK  126 (185)
T ss_pred             HHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence            48888887   4455544  99999999999999999777765 556666653 789999999997554

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.65  E-value=1.1e-15  Score=136.33  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHH-HHHHHHHHhccCC---CcEEEEEeCChhHHhhh
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDAL-RDVAKAVNGLLTP---KNSLLMITHYRRLLEFI  289 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~-~~i~~~L~~l~~~---g~tvIivtHd~~~~~~~  289 (325)
                      .-+.||+++|++++.+|+++|||||++|+|+... ..+...++.+.+.   +.++|++||+.+++...
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            4678999999999999999999999999999754 4445677777643   24899999999988765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.64  E-value=4.6e-16  Score=161.63  Aligned_cols=152  Identities=22%  Similarity=0.279  Sum_probs=98.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCC-CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEG-EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~G-e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+.++++..-+-.  ..-.-.+|+++..+ ++++|+||||+|||||+|+|+|.. +.+..|-                  
T Consensus       295 ~i~l~~~rhPll~--~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~-l~aq~G~------------------  353 (771)
T TIGR01069       295 KIILENARHPLLK--EPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLA-LMFQSGI------------------  353 (771)
T ss_pred             CEEEccccCceec--CCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHH-HHHHhCC------------------
Confidence            5777766532211  00122378899887 899999999999999999999851 2233441                  


Q ss_pred             ccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          156 AGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       156 ~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                          ++|.... .++.   .+.+   +                         ..++.. +....... +||+|+++++.|
T Consensus       354 ----~Vpa~~~~~~~~---~d~i---~-------------------------~~i~~~-~si~~~LS-tfS~~m~~~~~i  396 (771)
T TIGR01069       354 ----PIPANEHSEIPY---FEEI---F-------------------------ADIGDE-QSIEQNLS-TFSGHMKNISAI  396 (771)
T ss_pred             ----CccCCccccccc---hhhe---e-------------------------eecChH-hHHhhhhh-HHHHHHHHHHHH
Confidence                1111110 0000   0000   0                         000000 00111222 499999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHH-HHHHHhccCCCcEEEEEeCChhHHh
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDV-AKAVNGLLTPKNSLLMITHYRRLLE  287 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i-~~~L~~l~~~g~tvIivtHd~~~~~  287 (325)
                      ++++ .+|+++|||||++|+|+.....+ ..++..+.+.|.++|++||+.++..
T Consensus       397 l~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       397 LSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             HHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            8876 78999999999999999999998 4677777767889999999987644

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.62  E-value=4.7e-16  Score=138.93  Aligned_cols=85  Identities=22%  Similarity=0.287  Sum_probs=61.6

Q ss_pred             hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEE
Q 020520          201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL  276 (325)
Q Consensus       201 ~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv  276 (325)
                      .+.+.+....+..+        .||||||.+++||--|+    ...+++|||||.++||...+..+.++|+++.++ .-+
T Consensus       122 ~~~~~l~~~~i~~~--------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~  192 (220)
T PF02463_consen  122 DLEELLPEVGISPE--------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQF  192 (220)
T ss_dssp             HHHHHHHCTTTTTT--------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEE
T ss_pred             cccccccccccccc--------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            34455666655422        49999999999997664    478999999999999999999999999998654 678


Q ss_pred             EEEeCChhHHhhhCCcEEEE
Q 020520          277 LMITHYRRLLEFIKPTFIHI  296 (325)
Q Consensus       277 IivtHd~~~~~~~~~d~i~v  296 (325)
                      |++||+..+....  |+.+.
T Consensus       193 ii~Th~~~~~~~a--~~~~~  210 (220)
T PF02463_consen  193 IITTHNPEMFEDA--DKLIG  210 (220)
T ss_dssp             EEE-S-HHHHTT---SEEEE
T ss_pred             ccccccccccccc--ccccc
Confidence            9999998877763  55544

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.58  E-value=3.3e-15  Score=141.46  Aligned_cols=188  Identities=24%  Similarity=0.359  Sum_probs=117.2

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCcc--CCCcchHHHHHHH
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVE--IPGVNNIDFLHMA  180 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~--~~~~~~~~~~~~~  180 (325)
                      .+|++.+++|.||-||||-+++++|-  .+|.-|.-. ++-+....-...+... +.-.|+.+..  +....-.+++...
T Consensus        98 rpg~vlglvgtngigkstAlkilagk--~kpnlg~~~-~pp~w~~il~~frgse-lq~yftk~le~~lk~~~kpQyvd~i  173 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGK--QKPNLGRYD-NPPDWQEILTYFRGSE-LQNYFTKILEDNLKAIIKPQYVDQI  173 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCC--CCCCCCCCC-CCcchHHHhhhhhhHH-HhhhhhhhccccccCcCChHHHHHH
Confidence            57999999999999999999999995  566656321 1111000000000000 0000121110  0000001111111


Q ss_pred             HHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHH
Q 020520          181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR  260 (325)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~  260 (325)
                      ........+. ............++++.+.+. ..+++.+.. |||||-||.+||.+.+++.++.++|||.+-||...+.
T Consensus       174 pr~~k~~v~~-~l~~~~~r~~~~~~~~~~~L~-~~~~re~~~-lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRL  250 (592)
T KOG0063|consen  174 PRAVKGTVGS-LLDRKDERDNKEEVCDQLDLN-NLLDREVEQ-LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRL  250 (592)
T ss_pred             HHHHHHHHHH-HHHHHhhcccHHHHHHHHHHh-hHHHhhhhh-cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhh
Confidence            1100000000 000111112334456666664 567788765 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          261 DVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       261 ~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      .-...|+.+.....-||+|.||+..+... .|-+.++.
T Consensus       251 kaA~~IRsl~~p~~YiIVVEHDLsVLDyl-SDFiCcLY  287 (592)
T KOG0063|consen  251 KAAITIRSLINPDRYIIVVEHDLSVLDYL-SDFICCLY  287 (592)
T ss_pred             hHHHHHHHhhCCCCeEEEEEeechHHHhh-hcceeEEe
Confidence            99999999987777899999999988876 58888876

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.58  E-value=1.5e-14  Score=128.78  Aligned_cols=48  Identities=10%  Similarity=0.036  Sum_probs=44.0

Q ss_pred             CChH--HHHHHHHHHHHHhCCCEEEEeCcC-----cCCCHHHHHHHHHHHHhccC
Q 020520          224 FSGG--ERKRNEILQLAVLGADLAILDEID-----SGLDVDALRDVAKAVNGLLT  271 (325)
Q Consensus       224 LSgG--qrQRv~iAraL~~~p~lLlLDEPt-----sgLD~~~~~~i~~~L~~l~~  271 (325)
                      .||+  |++++.|||+++.+|+++++||||     ++||+..++.+.+.++++++
T Consensus       151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            4444  999999999999999999999999     99999999999999999853

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.55  E-value=1.9e-14  Score=131.06  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=62.3

Q ss_pred             CCCCChHH--------HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH-HHHHHHhccCCCcEEEEEeCChhHHhhhCC
Q 020520          221 NEGFSGGE--------RKRNEILQLAVLGADLAILDEIDSGLDVDALRD-VAKAVNGLLTPKNSLLMITHYRRLLEFIKP  291 (325)
Q Consensus       221 ~~~LSgGq--------rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvIivtHd~~~~~~~~~  291 (325)
                      ++.+|||+        +||+++||++..+++|++|  ||+.+|..+... ++  +.++...+.|.|++||++.....  .
T Consensus       127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~--~  200 (249)
T cd01128         127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRI--F  200 (249)
T ss_pred             CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCC--C
Confidence            44589999        9999999999999999999  999999644443 43  45554456799999997766554  5


Q ss_pred             cEEEEEeCCEEEE
Q 020520          292 TFIHIMEDGRIIK  304 (325)
Q Consensus       292 d~i~vl~~G~iv~  304 (325)
                      +.|.||+.|.+.+
T Consensus       201 paI~vl~s~sr~~  213 (249)
T cd01128         201 PAIDILKSGTRKE  213 (249)
T ss_pred             CeEEEcCCCCccc
Confidence            8999999999854

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.53  E-value=4.1e-14  Score=126.85  Aligned_cols=138  Identities=22%  Similarity=0.224  Sum_probs=89.9

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +.+.+|++|.+.+|++++|+||||+|||||++++++.. +.++.|...+... .           .+.+..|   ++.. 
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~-~-----------~~~~~~~---i~~~-   80 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASS-A-----------TLSIFDS---VLTR-   80 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCc-e-----------EEeccce---EEEE-
Confidence            46899999999999999999999999999999999952 4567787655321 1           0111000   0000 


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC--hHHHHHHHHHHHHHhCCCEEEEeC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS--GGERKRNEILQLAVLGADLAILDE  249 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS--gGqrQRv~iAraL~~~p~lLlLDE  249 (325)
                                                           ++-..+ ..    .++|  ..|.+|+.-+.--+.+++++||||
T Consensus        81 -------------------------------------~~~~d~-~~----~~~StF~~e~~~~~~il~~~~~~sLvllDE  118 (222)
T cd03287          81 -------------------------------------MGASDS-IQ----HGMSTFMVELSETSHILSNCTSRSLVILDE  118 (222)
T ss_pred             -------------------------------------ecCccc-cc----cccchHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence                                                 000000 00    0122  234444444444567899999999


Q ss_pred             cCcCCCHHHHHHH-HHHHHhccCC-CcEEEEEeCChhHHhh
Q 020520          250 IDSGLDVDALRDV-AKAVNGLLTP-KNSLLMITHYRRLLEF  288 (325)
Q Consensus       250 PtsgLD~~~~~~i-~~~L~~l~~~-g~tvIivtHd~~~~~~  288 (325)
                      |.+|.|+.....+ ..+++.+.+. +.++|++||+.++...
T Consensus       119 ~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         119 LGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             CCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            9888886666654 4566666654 7899999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00634 recN DNA repair protein RecN

Probab=99.53  E-value=2.4e-14  Score=144.94  Aligned_cols=76  Identities=25%  Similarity=0.321  Sum_probs=69.0

Q ss_pred             CCChHHHHHHHHHHHHHhC----CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          223 GFSGGERKRNEILQLAVLG----ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~----p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      .|||||+||++||++++..    |++|||||||+|||+.+...+.+.|+++.+ +.+||+|||++..+. . ||++++|+
T Consensus       440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~-~-ad~~~~l~  516 (563)
T TIGR00634       440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAA-H-ADAHFKVE  516 (563)
T ss_pred             hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHH-h-cCeEEEEE
Confidence            4899999999999999985    699999999999999999999999999874 789999999998885 4 79999998


Q ss_pred             CCE
Q 020520          299 DGR  301 (325)
Q Consensus       299 ~G~  301 (325)
                      +|.
T Consensus       517 k~~  519 (563)
T TIGR00634       517 KEG  519 (563)
T ss_pred             Ecc
Confidence            764

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.52  E-value=3.1e-14  Score=148.35  Aligned_cols=79  Identities=23%  Similarity=0.264  Sum_probs=63.5

Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH-HHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK-AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      +||+||+|++.|++++ .+|+++|||||++|+|+.....+.. ++..+.+.|.++|++||+.++.... +++..++ ++.
T Consensus       390 tfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~-~~~~~v~-~~~  466 (782)
T PRK00409        390 TFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALM-YNREGVE-NAS  466 (782)
T ss_pred             HHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHH-hcCCCeE-EEE
Confidence            4999999999999988 8999999999999999999888865 5666666688999999998887765 4544333 444


Q ss_pred             EEE
Q 020520          302 IIK  304 (325)
Q Consensus       302 iv~  304 (325)
                      +..
T Consensus       467 ~~~  469 (782)
T PRK00409        467 VEF  469 (782)
T ss_pred             EEE
Confidence            443

>TIGR00618 sbcc exonuclease SbcC

Probab=99.50  E-value=5.5e-14  Score=151.69  Aligned_cols=83  Identities=23%  Similarity=0.221  Sum_probs=74.6

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHh----------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020520          216 LNRNVNEGFSGGERKRNEILQLAVL----------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       216 ~~~~~~~~LSgGqrQRv~iAraL~~----------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~  285 (325)
                      .++.+. .|||||++||+||+||+.          +|++|||||||++||+.+...+++.|.++...|.+|+||||++++
T Consensus       944 ~~r~~~-~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618       944 SVRPSA-TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred             CcCCcc-cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence            344555 599999999999999986          799999999999999999999999999997778899999999999


Q ss_pred             HhhhCCcEEEEEeCC
Q 020520          286 LEFIKPTFIHIMEDG  300 (325)
Q Consensus       286 ~~~~~~d~i~vl~~G  300 (325)
                      ...+ +++|.|++.|
T Consensus      1023 ~~~~-~~~i~v~~~~ 1036 (1042)
T TIGR00618      1023 RERI-PHRILVKKTN 1036 (1042)
T ss_pred             HHhh-CCEEEEEECC
Confidence            9887 6999998754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.49  E-value=4.5e-13  Score=130.96  Aligned_cols=176  Identities=17%  Similarity=0.173  Sum_probs=110.3

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC--------HHHHhhccEEEec
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME--------PEERSLAGLFMSF  162 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~--------~~~~~~~~i~~~~  162 (325)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|+  ..++.|.|.+.|++-....        ...+ ...++++.
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~--~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l-~r~v~vv~  220 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARN--TSADLNVIALIGERGREVREFIERDLGPEGL-KRSIVVVA  220 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcc--cCCCeEEEEEEecCCccHHHHHHhhcChhhh-cCeEEEEE
Confidence            35689999 99999999999999999999999999997  6789999999665433221        1111 12345554


Q ss_pred             cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC-hHHHHHHHHHHHHHhC
Q 020520          163 QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS-GGERKRNEILQLAVLG  241 (325)
Q Consensus       163 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS-gGqrQRv~iAraL~~~  241 (325)
                      +...     ....-+...+..                -.+.|++..-|..-=+.-.    +|+ --|.+| .|+      
T Consensus       221 ~~~~-----~~~~r~~~~~~a----------------~~iAEyfr~~g~~Vll~~D----sltr~A~A~r-Eis------  268 (438)
T PRK07721        221 TSDQ-----PALMRIKGAYTA----------------TAIAEYFRDQGLNVMLMMD----SVTRVAMAQR-EIG------  268 (438)
T ss_pred             CCCC-----CHHHHHHHHHHH----------------HHHHHHHHHCCCcEEEEEe----ChHHHHHHHH-HHH------
Confidence            3211     111111111100                0122223222321000001    121 122222 011      


Q ss_pred             CCEEEEeCc--CcCCCHHHHHHHHHHHHhccC--CCc-----EEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          242 ADLAILDEI--DSGLDVDALRDVAKAVNGLLT--PKN-----SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       242 p~lLlLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                         +.+.||  |+|+|+.....+.+++.++..  +|.     ||++.+||++.  .+ ||++.++.+|+|+.+++.
T Consensus       269 ---l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i-~d~v~~i~dG~Ivls~~l  338 (438)
T PRK07721        269 ---LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PI-ADTVRGILDGHFVLDRQL  338 (438)
T ss_pred             ---HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hh-hhhEEEecCEEEEEeccH
Confidence               234564  789999999999999999873  574     99999999883  45 699999999999998863

>PRK10869 recombination and repair protein; Provisional

Probab=99.47  E-value=1.5e-13  Score=138.46  Aligned_cols=74  Identities=20%  Similarity=0.244  Sum_probs=66.6

Q ss_pred             CChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          224 FSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      |||||+|||+||++++.    +|+++|||||++|||..+...+.+.|+++.+ +.+||+|||++..+. + ||+.+++.+
T Consensus       431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~~-~-ad~~~~v~k  507 (553)
T PRK10869        431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVAG-C-GHQHFFVSK  507 (553)
T ss_pred             CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-h-CCEEEEEec
Confidence            79999999999999997    5899999999999999999999999999964 589999999998774 4 688888876


Q ss_pred             C
Q 020520          300 G  300 (325)
Q Consensus       300 G  300 (325)
                      +
T Consensus       508 ~  508 (553)
T PRK10869        508 E  508 (553)
T ss_pred             c
Confidence            4

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.47  E-value=8.4e-14  Score=140.97  Aligned_cols=76  Identities=26%  Similarity=0.388  Sum_probs=66.4

Q ss_pred             CCChHHHHHHHHHHHHH----------hCCCEEEEeCcC-cCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCC
Q 020520          223 GFSGGERKRNEILQLAV----------LGADLAILDEID-SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP  291 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~----------~~p~lLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~  291 (325)
                      .|||||+||++||+||+          .+|++||||||| ++||+.+...+.+.|.++  .+.|||+|||+......  +
T Consensus       468 ~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~~--~  543 (562)
T PHA02562        468 SFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQK--F  543 (562)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchhh--h
Confidence            59999999999999987          599999999998 789999999999999998  47899999999776653  5


Q ss_pred             cEEEEEeC-CEE
Q 020520          292 TFIHIMED-GRI  302 (325)
Q Consensus       292 d~i~vl~~-G~i  302 (325)
                      |++++|.+ |+.
T Consensus       544 d~~~~l~~~~~~  555 (562)
T PHA02562        544 DRHLKMEKVGRF  555 (562)
T ss_pred             hcEEEEEEECCe
Confidence            88888875 554

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.45  E-value=6.5e-13  Score=119.86  Aligned_cols=60  Identities=20%  Similarity=0.295  Sum_probs=46.3

Q ss_pred             CChHHHHHHHHHHHHHh----CCCEEEEeCcCcCC----CHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          224 FSGGERKRNEILQLAVL----GADLAILDEIDSGL----DVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgL----D~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      +|+++.++-.+++.+-.    +|+++++||||+++    |+...+.+.+.++.+++.|.|++ +||+..
T Consensus        96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi-~t~~~~  163 (230)
T PRK08533         96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVII-LTANPK  163 (230)
T ss_pred             ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEE-EEeccc
Confidence            67777666666655543    69999999999999    88888899999998877777655 566544

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.44  E-value=5.6e-13  Score=119.15  Aligned_cols=139  Identities=22%  Similarity=0.219  Sum_probs=88.8

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +.+-+|++|++++|++++|+||||+|||||++++++.. +-...|-      .+   + ....  .+.+.   ..++.. 
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~-~la~~G~------~v---p-a~~~--~i~~~---~~i~~~-   79 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV-IMAQMGM------DV---P-AKSM--RLSLV---DRIFTR-   79 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH-HHHHcCC------cc---C-cccc--Eeccc---cEEEEe-
Confidence            56889999999999999999999999999999998851 1111121      00   0 0000  01100   000000 


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh--HHHHHHHHHHHHHhCCCEEEEeC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG--GERKRNEILQLAVLGADLAILDE  249 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg--GqrQRv~iAraL~~~p~lLlLDE  249 (325)
                                                           ++-..+ ..    .++|.  .|.+++.-....+.+|+++||||
T Consensus        80 -------------------------------------~~~~d~-~~----~~~StF~~e~~~~~~il~~~~~~sLvLlDE  117 (218)
T cd03286          80 -------------------------------------IGARDD-IM----KGESTFMVELSETANILRHATPDSLVILDE  117 (218)
T ss_pred             -------------------------------------cCcccc-cc----cCcchHHHHHHHHHHHHHhCCCCeEEEEec
Confidence                                                 000000 00    01221  34455544444457899999999


Q ss_pred             cCcCCCHHHHHHHHHH-HHhccCC-CcEEEEEeCChhHHhhh
Q 020520          250 IDSGLDVDALRDVAKA-VNGLLTP-KNSLLMITHYRRLLEFI  289 (325)
Q Consensus       250 PtsgLD~~~~~~i~~~-L~~l~~~-g~tvIivtHd~~~~~~~  289 (325)
                      |++|+|+.....+... ++.+.+. +.++|++||+++++...
T Consensus       118 ~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~  159 (218)
T cd03286         118 LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF  159 (218)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence            9999999998888887 6666654 78999999999987765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.43  E-value=2e-13  Score=107.93  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +.+|++++|++++|++++|+||||||||||++++.        +|++.++|.++..++.....+ .+++++|+  +|. .
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~-~~~~~~q~--lf~-~   69 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDE-LIGRNPEL--GLE-I   69 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCC-EEEEechh--cch-h
Confidence            46899999999999999999999999999999975        589999999987766544433 35566666  222 3


Q ss_pred             chHHHHHH
Q 020520          172 NNIDFLHM  179 (325)
Q Consensus       172 ~~~~~~~~  179 (325)
                      +..+|+..
T Consensus        70 ti~~Ni~~   77 (107)
T cd00820          70 RLRLNIFL   77 (107)
T ss_pred             hHHhhcee
Confidence            55555543

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13695 putative NTPase; Provisional

Probab=99.41  E-value=5.6e-13  Score=114.96  Aligned_cols=78  Identities=23%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeC--cCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDE--IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDE--PtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      .+||+++-++.+++..+.+|+++|+||  |+.++|....    +.+.++.+.+.++|+++|+.. +... +|+|..+.+|
T Consensus        78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~----~~l~~~~~~~~~~i~v~h~~~-~~~~-~~~i~~~~~~  151 (174)
T PRK13695         78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFV----KAVEEVLDSEKPVIATLHRRS-VHPF-VQEIKSRPGG  151 (174)
T ss_pred             ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH----HHHHHHHhCCCeEEEEECchh-hHHH-HHHHhccCCc
Confidence            399999999999999999999999999  5555555444    444444445789999999853 3344 5889999999


Q ss_pred             EEEEEc
Q 020520          301 RIIKTG  306 (325)
Q Consensus       301 ~iv~~g  306 (325)
                      +|++.-
T Consensus       152 ~i~~~~  157 (174)
T PRK13695        152 RVYELT  157 (174)
T ss_pred             EEEEEc
Confidence            997664

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.39  E-value=1e-12  Score=141.63  Aligned_cols=80  Identities=26%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             ccCCCCCChHHHHHHHHHHHHHh--------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhh
Q 020520          218 RNVNEGFSGGERKRNEILQLAVL--------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI  289 (325)
Q Consensus       218 ~~~~~~LSgGqrQRv~iAraL~~--------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~  289 (325)
                      +.+. +|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..+.+.|+||+||||..++...+
T Consensus       945 r~~~-~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246        945 RDTR-TLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred             CCcc-cCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence            5555 599999999999999996        8999999999999999999999999999987799999999998888887


Q ss_pred             CCcEEEEEeC
Q 020520          290 KPTFIHIMED  299 (325)
Q Consensus       290 ~~d~i~vl~~  299 (325)
                       ..+|.|-..
T Consensus      1024 -~~qi~V~k~ 1032 (1047)
T PRK10246       1024 -PVQIKVKKI 1032 (1047)
T ss_pred             -cceEEEEEC
Confidence             578877654

>PRK03918 chromosome segregation protein; Provisional

Probab=99.39  E-value=8.4e-13  Score=140.36  Aligned_cols=74  Identities=23%  Similarity=0.262  Sum_probs=65.0

Q ss_pred             CCChHHHH------HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEE
Q 020520          223 GFSGGERK------RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI  296 (325)
Q Consensus       223 ~LSgGqrQ------Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~v  296 (325)
                      .|||||+|      |++||++++.+|+++||||||++||+..+..+.++|..+...+.+||+||||.++. .. ||++++
T Consensus       788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~-~d~~~~  865 (880)
T PRK03918        788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DA-ADYVIR  865 (880)
T ss_pred             hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-Hh-CCeEEE
Confidence            59999999      55566678899999999999999999999999999999876677999999998865 44 699999


Q ss_pred             Ee
Q 020520          297 ME  298 (325)
Q Consensus       297 l~  298 (325)
                      |+
T Consensus       866 l~  867 (880)
T PRK03918        866 VS  867 (880)
T ss_pred             EE
Confidence            87

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.38  E-value=1.5e-12  Score=115.90  Aligned_cols=64  Identities=20%  Similarity=0.325  Sum_probs=53.5

Q ss_pred             CCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          223 GFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      .+|.|++|.+.|+.++...+   .++++|||-++|+|..++.+++.|.+..+.+.-||++||.+.++
T Consensus       236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            37999999999998888766   89999999999999999999999988866567899999988654

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.38  E-value=5.3e-12  Score=122.75  Aligned_cols=169  Identities=21%  Similarity=0.211  Sum_probs=118.1

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      +.++-+.++..|.. +..+++.+ |.+.+|+.++|+|+||+|||||+++|+|.  .+++.|.|.+.|+.-.         
T Consensus       129 ~~~~r~~i~~~l~T-GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~~~gvI~~iGerg~---------  195 (432)
T PRK06793        129 HAFEREEITDVFET-GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKN--AKADINVISLVGERGR---------  195 (432)
T ss_pred             CchheechhhccCC-CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhcc--CCCCeEEEEeCCCCcc---------
Confidence            35777888888864 45688885 99999999999999999999999999997  5678887776665321         


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                                      ++.+++....                         ..-++.....-.... +.|.|+|+|++.+
T Consensus       196 ----------------ev~e~~~~~l-------------------------~~~gl~~tvvv~~ts-d~s~~~r~ra~~~  233 (432)
T PRK06793        196 ----------------EVKDFIRKEL-------------------------GEEGMRKSVVVVATS-DESHLMQLRAAKL  233 (432)
T ss_pred             ----------------cHHHHHHHHh-------------------------hhcccceeEEEEECC-CCCHHHHHHHHHH
Confidence                            2222221110                         000111000111122 4799999999999


Q ss_pred             HHHH-------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          236 QLAV-------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       236 raL~-------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      .+.+       .++-+|++|+||...|+.  +++...+.+.-..|.+..+.||-.++.++.     -...+|.|....
T Consensus       234 a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERa-----g~~~~GSiT~~~  304 (432)
T PRK06793        234 ATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERS-----GKTQKGSITGIY  304 (432)
T ss_pred             HHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHh-----ccCCCcceEEEE
Confidence            8887       789999999999999986  666667777654577888888866666553     224678876543

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.38  E-value=3.9e-12  Score=110.24  Aligned_cols=81  Identities=11%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             ccccCCCCCChHHHH------HHHHHHHHHhCCCEEEEeCcCcCCC---HHHHHHHHHHHHhccCCCcEEEEEeCChhH-
Q 020520          216 LNRNVNEGFSGGERK------RNEILQLAVLGADLAILDEIDSGLD---VDALRDVAKAVNGLLTPKNSLLMITHYRRL-  285 (325)
Q Consensus       216 ~~~~~~~~LSgGqrQ------Rv~iAraL~~~p~lLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-  285 (325)
                      .+..+. .+|+|++|      +...+.+...+|+++++|||++.+|   ...+..+.++++.+++.|.|+|+++|+... 
T Consensus        65 ~d~~~~-~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~  143 (187)
T cd01124          65 VDADPD-EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLE  143 (187)
T ss_pred             EecCcc-ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence            344444 48999998      5555555677999999999999999   888888889998887778999999998764 


Q ss_pred             --------HhhhCCcEEEEEe
Q 020520          286 --------LEFIKPTFIHIME  298 (325)
Q Consensus       286 --------~~~~~~d~i~vl~  298 (325)
                              +..+ +|.++.|+
T Consensus       144 ~~~~~~~~~~~~-aD~ii~l~  163 (187)
T cd01124         144 GTGFGGGDVEYL-VDGVIRLR  163 (187)
T ss_pred             CcccCcCceeEe-eeEEEEEE
Confidence                    4444 68888776

A related protein is found in archaea.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.37  E-value=1.1e-11  Score=106.21  Aligned_cols=78  Identities=21%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      .|.||-=--.+.+.+- +--++|||||-++|.+.-+-.++..|+++.+.|.-+||+||.+=++..- --.|+-++.+.+-
T Consensus       130 ~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP-~A~I~~~~~~g~~  207 (233)
T COG3910         130 MSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIP-GAEIYEISESGIE  207 (233)
T ss_pred             hccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCC-CcEEEEEecCCcc
Confidence            7999987766666654 6689999999999999999999999999998899999999987666544 3567777776553

>TIGR00606 rad50 rad50

Probab=99.36  E-value=1.9e-12  Score=142.53  Aligned_cols=78  Identities=22%  Similarity=0.307  Sum_probs=67.0

Q ss_pred             cCCCCCChHHHH------HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-----CCCcEEEEEeCChhHHh
Q 020520          219 NVNEGFSGGERK------RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-----TPKNSLLMITHYRRLLE  287 (325)
Q Consensus       219 ~~~~~LSgGqrQ------Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-----~~g~tvIivtHd~~~~~  287 (325)
                      ..+ .|||||||      |++||||++.+|++|||||||+|||+.+...+.+.|..+.     ..|.+||+||||++++.
T Consensus      1196 ~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606      1196 MRG-RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred             CCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence            344 49999999      9999999999999999999999999999999999998873     23779999999999998


Q ss_pred             hhC----CcEEEEE
Q 020520          288 FIK----PTFIHIM  297 (325)
Q Consensus       288 ~~~----~d~i~vl  297 (325)
                      .++    +++++-+
T Consensus      1275 ~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606      1275 LLGRSEYVEKFYRL 1288 (1311)
T ss_pred             HHhhccccceeeee
Confidence            775    4555544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.34  E-value=5.1e-12  Score=127.99  Aligned_cols=103  Identities=21%  Similarity=0.280  Sum_probs=88.8

Q ss_pred             HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhC--CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020520          205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG--ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY  282 (325)
Q Consensus       205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~--p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd  282 (325)
                      .|..+|+++=.++|..+. |||||.||+-||.-+=+.  -=+++||||+.||-+.--+++++.|+++++.|.|+|+|.||
T Consensus       464 fL~~VGL~YLtL~R~a~T-LSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHD  542 (935)
T COG0178         464 FLVDVGLGYLTLSRSAGT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHD  542 (935)
T ss_pred             HHHHcCcCcccccccCCC-cChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecC
Confidence            355678876667888775 999999999999999765  45789999999999999999999999999889999999999


Q ss_pred             hhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          283 RRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       283 ~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      .+.+..  ||+|+=|      +.|+|++.|+++.
T Consensus       543 edti~~--AD~iIDiGPgAG~~GGeIv~~Gtp~~  574 (935)
T COG0178         543 EDTIRA--ADHIIDIGPGAGEHGGEIVAEGTPEE  574 (935)
T ss_pred             HHHHhh--cCEEEeeCCCCCcCCCEEEEccCHHH
Confidence            887765  6998765      5789999999864

>PRK01156 chromosome segregation protein; Provisional

Probab=99.33  E-value=7.1e-12  Score=133.63  Aligned_cols=74  Identities=26%  Similarity=0.348  Sum_probs=63.9

Q ss_pred             CCChHHHHHHHH------HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CC-C-cEEEEEeCChhHHhhhCCcE
Q 020520          223 GFSGGERKRNEI------LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TP-K-NSLLMITHYRRLLEFIKPTF  293 (325)
Q Consensus       223 ~LSgGqrQRv~i------AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvIivtHd~~~~~~~~~d~  293 (325)
                      .|||||++|++|      |++|+.+|++++|||||++||+.....+.++|.... .. + .+||+||||.+++. . ||+
T Consensus       801 ~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~-~-~d~  878 (895)
T PRK01156        801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLS-V-ADV  878 (895)
T ss_pred             cCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHH-h-cCe
Confidence            599999999975      589999999999999999999999999999998643 33 3 48999999999875 4 689


Q ss_pred             EEEEe
Q 020520          294 IHIME  298 (325)
Q Consensus       294 i~vl~  298 (325)
                      ++.+.
T Consensus       879 ii~~~  883 (895)
T PRK01156        879 AYEVK  883 (895)
T ss_pred             EEEEE
Confidence            98886

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.30  E-value=4.6e-11  Score=125.79  Aligned_cols=69  Identities=16%  Similarity=0.019  Sum_probs=59.4

Q ss_pred             HhCCCEEEEeCcCcCC-CHHHHHHHHHHHHhccCCCcEEEEEeCChhHHh---------hhCCcEEEEEeCCEEEEEcCc
Q 020520          239 VLGADLAILDEIDSGL-DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLE---------FIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       239 ~~~p~lLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~---------~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      ..+|+++++|||+.+| |+...+.+.+.++++++.|.++|++||+++.+.         .. |++.++|.+|++...+..
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~-~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKES-CPTKICLPNGAAREPGTR  728 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhc-CCeEEECCCccccccchH
Confidence            4799999999999999 799999999999999888889999999998875         33 688888999998665543

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.27  E-value=4.6e-12  Score=119.16  Aligned_cols=141  Identities=16%  Similarity=0.129  Sum_probs=90.4

Q ss_pred             eEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHH
Q 020520           98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFL  177 (325)
Q Consensus        98 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~  177 (325)
                      +++.++.|+.++|+|++|||||||+++|+++  +++..|.+.+..  ...+.....  ..+.+..+.             
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~--~~~~~~iv~ied--~~El~~~~~--~~~~l~~~~-------------  197 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDE--IPKDERIITIED--TREIFLPHP--NYVHLFYSK-------------  197 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHcc--CCccccEEEEcC--ccccCCCCC--CEEEEEecC-------------
Confidence            4567889999999999999999999999997  567777777642  111110000  001100000             


Q ss_pred             HHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHH
Q 020520          178 HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD  257 (325)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~  257 (325)
                                                          . ... . ...+-    .-.++.+|-.+|+++++|||.+     
T Consensus       198 ------------------------------------~-~~~-~-~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-----  229 (308)
T TIGR02788       198 ------------------------------------G-GQG-L-AKVTP----KDLLQSCLRMRPDRIILGELRG-----  229 (308)
T ss_pred             ------------------------------------C-CCC-c-CccCH----HHHHHHHhcCCCCeEEEeccCC-----
Confidence                                                0 000 0 01222    2246677889999999999996     


Q ss_pred             HHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       258 ~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                        .+++++++.+.....+++.++|..+....  .+|+..|..|++...|.+.
T Consensus       230 --~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~--~~Rl~~l~~~~~~~~g~~~  277 (308)
T TIGR02788       230 --DEAFDFIRAVNTGHPGSITTLHAGSPEEA--FEQLALMVKSSQAGLGLDF  277 (308)
T ss_pred             --HHHHHHHHHHhcCCCeEEEEEeCCCHHHH--HHHHHHHhhccccccCCCH
Confidence              34556666665333467999999885544  4888888888888777654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.26  E-value=3.8e-12  Score=123.89  Aligned_cols=67  Identities=16%  Similarity=0.217  Sum_probs=54.1

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCC
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSP  165 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~  165 (325)
                      .+|++|||++++||+++|+|||||||||||+  +|+  ..|++| +|.++|+++...+........  +|||+.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l--~~~~sGg~I~ldg~~~~~~~~~ai~~LR--~VFQ~f   87 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENK--RKFSEGYEFFLDATHSFSPNKNAMETLD--EIFDGF   87 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCC--CCCCCCCEEEECCEECCCCCHHHHHHHH--HHHHhh
Confidence            5899999999999999999999999999999  665  456777 899999999876654433222  566654

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.24  E-value=1.3e-11  Score=134.23  Aligned_cols=76  Identities=25%  Similarity=0.373  Sum_probs=64.8

Q ss_pred             ccCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020520          218 RNVNEGFSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF  293 (325)
Q Consensus       218 ~~~~~~LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~  293 (325)
                      ..+. .|||||+||++||++++    ..|+++||||||++||+.+...+.++|..+.+. .+||||||++.++. . ||+
T Consensus      1085 ~~~~-~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-~~~i~~sh~~~~~~-~-~d~ 1160 (1179)
T TIGR02168      1085 QNLS-LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-TQFIVITHNKGTME-V-ADQ 1160 (1179)
T ss_pred             cccc-ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-CEEEEEEcChhHHH-H-hhh
Confidence            3444 59999999999999985    577999999999999999999999999998654 68999999999775 4 688


Q ss_pred             EEEE
Q 020520          294 IHIM  297 (325)
Q Consensus       294 i~vl  297 (325)
                      ++.+
T Consensus      1161 ~~~~ 1164 (1179)
T TIGR02168      1161 LYGV 1164 (1179)
T ss_pred             Heee
Confidence            7644

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.22  E-value=9.1e-11  Score=98.33  Aligned_cols=63  Identities=11%  Similarity=-0.017  Sum_probs=48.2

Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcC----------CCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSG----------LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsg----------LD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      .+.++.++++.+++...+|+++++||+++-          .|....+.+.+++....+.+.|+|+++|.....
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            456667788889999999999999999954          444556666666666655688999999976543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.14  E-value=9e-11  Score=124.99  Aligned_cols=76  Identities=25%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             CCChHHHH------HHHHHHHHHhC-----C-CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCc-EEEEEeCChhHHhhh
Q 020520          223 GFSGGERK------RNEILQLAVLG-----A-DLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFI  289 (325)
Q Consensus       223 ~LSgGqrQ------Rv~iAraL~~~-----p-~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvIivtHd~~~~~~~  289 (325)
                      .||||||+      |++||++++.+     | +++||||||++||+..+..+.++|..+...|. +||+||||.+++. .
T Consensus       781 ~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~-~  859 (880)
T PRK02224        781 QLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG-A  859 (880)
T ss_pred             hcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH-h
Confidence            59999999      99999999864     3 67999999999999999999999999875554 8999999999885 4


Q ss_pred             CCcEEEEEeCC
Q 020520          290 KPTFIHIMEDG  300 (325)
Q Consensus       290 ~~d~i~vl~~G  300 (325)
                       +|+++++.+.
T Consensus       860 -ad~~~~~~~~  869 (880)
T PRK02224        860 -ADDLVRVEKD  869 (880)
T ss_pred             -cCeeEEeecC
Confidence             6899888643

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.13  E-value=1.2e-10  Score=126.89  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=64.2

Q ss_pred             CCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          223 GFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      .||||||++++||++|+.    .|+++|||||+++||+..+..+.++|.++.. +.++|+|||+...+. . ||+++.+.
T Consensus      1074 ~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~-~-~d~~~~~~ 1150 (1164)
T TIGR02169      1074 AMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIE-Y-ADRAIGVT 1150 (1164)
T ss_pred             hcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHH-h-cceeEeEE
Confidence            599999999999999985    6899999999999999999999999999865 468999999987664 4 68887664

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.03  E-value=1.1e-09  Score=98.75  Aligned_cols=74  Identities=15%  Similarity=0.132  Sum_probs=55.8

Q ss_pred             CChHHHHHHHHHHHHHh--CCCEEEEeCcCcC---CCHHHHHHHHHHHHhccCCCcEEEEEeCChhH-------HhhhCC
Q 020520          224 FSGGERKRNEILQLAVL--GADLAILDEIDSG---LDVDALRDVAKAVNGLLTPKNSLLMITHYRRL-------LEFIKP  291 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~--~p~lLlLDEPtsg---LD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~-------~~~~~~  291 (325)
                      .|.++.+.+..++.++.  +|+++++||||+.   +|......+++.++.+++.+.|+++++|+...       +..+ +
T Consensus       101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l-~  179 (234)
T PRK06067        101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI-C  179 (234)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh-e
Confidence            57789999999999987  9999999999965   44555556656676666678899999997654       3333 5


Q ss_pred             cEEEEEe
Q 020520          292 TFIHIME  298 (325)
Q Consensus       292 d~i~vl~  298 (325)
                      |-++.|+
T Consensus       180 DgvI~L~  186 (234)
T PRK06067        180 DVYLKLR  186 (234)
T ss_pred             EEEEEEE
Confidence            6666665

>TIGR00611 recf recF protein

Probab=98.98  E-value=8.9e-10  Score=105.96  Aligned_cols=62  Identities=18%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             CCChHHHHHHHHHHHHHh---------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020520          223 GFSGGERKRNEILQLAVL---------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLE  287 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~---------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~  287 (325)
                      .+|.||+|+++||.+|+.         +|+|||||||+++||+..++.+++.|.+.   |.+|+++||+++.+.
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~  345 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK  345 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence            489999999999999999         99999999999999999999999999764   568999999987654

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.96  E-value=2.6e-09  Score=96.82  Aligned_cols=47  Identities=26%  Similarity=0.384  Sum_probs=39.4

Q ss_pred             HHHhCCCEEEEeCcCcC------CCHHHHHHHHHHHHhccCC-CcEEEEEeCChh
Q 020520          237 LAVLGADLAILDEIDSG------LDVDALRDVAKAVNGLLTP-KNSLLMITHYRR  284 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsg------LD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~  284 (325)
                      +...+|+++|+| |+++      +|+.....+++.|.+++++ |.|||+++|...
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            345799999999 7764      7999999999999998754 889999999753

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.94  E-value=1.8e-08  Score=98.80  Aligned_cols=177  Identities=16%  Similarity=0.148  Sum_probs=105.3

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH---Hh---hccEEEeccC
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE---RS---LAGLFMSFQS  164 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~---~~---~~~i~~~~Q~  164 (325)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|.  ..++.|.+...|+.-.....-.   ..   .....++...
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~--~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~  226 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARN--TEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT  226 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCC--CCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence            35789999 99999999999999999999999999997  5677787777665433221100   00   0011111111


Q ss_pred             CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC-hHHHHHHHHHHHHHhCCC
Q 020520          165 PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS-GGERKRNEILQLAVLGAD  243 (325)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS-gGqrQRv~iAraL~~~p~  243 (325)
                      ...    ....-...               .. ..-.+.+.+...|..--++-    .+|+ --|.+| .|+        
T Consensus       227 ~d~----~p~~r~~~---------------~~-~a~t~AE~frd~G~~Vll~~----DslTr~A~A~R-Eis--------  273 (440)
T TIGR01026       227 SDQ----SPLLRLKG---------------AY-VATAIAEYFRDQGKDVLLLM----DSVTRFAMAQR-EIG--------  273 (440)
T ss_pred             CCC----CHHHHHHH---------------HH-HHHHHHHHHHHCCCCEEEEE----eChHHHHHHHH-HHH--------
Confidence            100    00000000               00 11123333433343210110    1122 123333 222        


Q ss_pred             EEEEeCc--CcCCCHHHHHHHHHHHHhccCCCc-------EEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          244 LAILDEI--DSGLDVDALRDVAKAVNGLLTPKN-------SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       244 lLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                       +.+.||  +.|+|+.....+.+++.+....+.       ||++.+||+.  ..+ +|.+..+.+|+|+.+..
T Consensus       274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi-~d~~~~i~dG~ivLsr~  342 (440)
T TIGR01026       274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPI-ADSVRGILDGHIVLSRA  342 (440)
T ss_pred             -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cch-hhhhccccceEEEEecc
Confidence             456775  569999999999999999876566       8888999873  444 68888899999998774

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.93  E-value=5.7e-08  Score=78.21  Aligned_cols=59  Identities=25%  Similarity=0.144  Sum_probs=46.3

Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHH------HHHhccCCCcEEEEEeCC
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK------AVNGLLTPKNSLLMITHY  282 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~------~L~~l~~~g~tvIivtHd  282 (325)
                      ..+++..+..+++|-..+|.++++||+..-.+.........      ........+..+|+++|.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            68888999999999888899999999999999988876654      122223346688888883

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.92  E-value=5.9e-08  Score=102.88  Aligned_cols=55  Identities=18%  Similarity=-0.025  Sum_probs=49.8

Q ss_pred             HHHHHHhCCCEEEEeCcCcCC-CHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020520          234 ILQLAVLGADLAILDEIDSGL-DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF  288 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~  288 (325)
                      |++++..+|+++++|||+.+| |+..++.+.+.++.+++.|.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            577888999999999999999 7999999999999998788899999999987764

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.89  E-value=4.2e-09  Score=102.84  Aligned_cols=88  Identities=15%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC---EeCCCCCH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG---ENLLEMEP  150 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g---~~i~~~~~  150 (325)
                      ..+.++.++++..|.. +..+++.++ .|.+|++++|+|+||+|||||+++|+++  ..|+.|.|.+.|   +++..+..
T Consensus       136 ~p~~~~r~~v~~~l~T-Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l--~~pd~gvv~liGergrev~e~~~  211 (450)
T PRK06002        136 APPAMTRARVETGLRT-GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARA--DAFDTVVIALVGERGREVREFLE  211 (450)
T ss_pred             CCCCeEeecceEEcCC-CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCeeeeeecccCCccHHHHhH
Confidence            4557999999999974 467899996 9999999999999999999999999997  568899888864   55543333


Q ss_pred             HHH---hhccEEEeccCC
Q 020520          151 EER---SLAGLFMSFQSP  165 (325)
Q Consensus       151 ~~~---~~~~i~~~~Q~~  165 (325)
                      ..+   +...+++++|..
T Consensus       212 ~~l~~~r~rtI~vV~qsd  229 (450)
T PRK06002        212 DTLADNLKKAVAVVATSD  229 (450)
T ss_pred             HHHHHhhCCeEEEEEcCC
Confidence            221   224578888865

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.88  E-value=5.1e-09  Score=92.32  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=39.9

Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      +|+++|..+|+++++|||.   |.+....+++.    +..|..++.++|..+....  .+|++.+
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~----a~~G~~v~~t~Ha~~~~~~--~~Rl~~l  121 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLALTA----AETGHLVMSTLHTNSAAKT--IDRIIDV  121 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHH----HHcCCEEEEEecCCcHHHH--HhHHHhh
Confidence            5889999999999999996   66655444433    3457889999998765543  2555443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.88  E-value=6.5e-09  Score=111.10  Aligned_cols=75  Identities=25%  Similarity=0.297  Sum_probs=63.5

Q ss_pred             CCCChHHHHHHHHHHHHH------hC--CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020520          222 EGFSGGERKRNEILQLAV------LG--ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF  293 (325)
Q Consensus       222 ~~LSgGqrQRv~iAraL~------~~--p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~  293 (325)
                      .+|||||+=.++||-+|+      .+  -++|+|||||..||+++.+.+++.|..+...+.+|+|||||.++...+  |+
T Consensus       814 ~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~--~~  891 (908)
T COG0419         814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERA--DV  891 (908)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhC--Ce
Confidence            359999998887776663      45  699999999999999999999999999987788999999998887764  55


Q ss_pred             EEEEe
Q 020520          294 IHIME  298 (325)
Q Consensus       294 i~vl~  298 (325)
                      ++.++
T Consensus       892 ~i~V~  896 (908)
T COG0419         892 RIRVK  896 (908)
T ss_pred             EEEEE
Confidence            65554

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.84  E-value=3e-10  Score=113.25  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=89.8

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHH--hCCCCCCCCccEEEECCEeCCCCCHHH--HhhccEEEeccCCccCCCcchHHH
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVL--VGHPDYEVTEGSVVFKGENLLEMEPEE--RSLAGLFMSFQSPVEIPGVNNIDF  176 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l--~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~~~~i~~~~Q~~~~~~~~~~~~~  176 (325)
                      -+.+|..+.|.|++|||||||..-+  .|.  ....+.-+++..+.    ++..  +....++|.+++...-..+...+ 
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~--~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~~g~l~~~~-   89 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--IHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVDEGKLFILD-   89 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhhcCceEEEe-
Confidence            4789999999999999999999765  453  11123345554331    1222  11122333332211000000000 


Q ss_pred             HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH--HHHHhCCCEEEEeCcCcCC
Q 020520          177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL--QLAVLGADLAILDEIDSGL  254 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA--raL~~~p~lLlLDEPtsgL  254 (325)
                                      .....   .....++.+++. +..++... .+|+|++|||.|+  .+|...|+.+         
T Consensus        90 ----------------~~~~~---~~~~~~~~~~l~-~~l~~i~~-~ls~g~~qRVvIDSl~aL~~~~~~~---------  139 (484)
T TIGR02655        90 ----------------ASPDP---EGQDVVGGFDLS-ALIERINY-AIRKYKAKRVSIDSVTAVFQQYDAV---------  139 (484)
T ss_pred             ----------------cCchh---ccccccccCCHH-HHHHHHHH-HHHHhCCcEEEEeehhHhhhhcCch---------
Confidence                            00000   000012223332 23333333 4999999999999  5665655544         


Q ss_pred             CHHHHHHHHHHHHhccCCCcEEEEEeCChhH--------H-hhhCCcEEEEEe
Q 020520          255 DVDALRDVAKAVNGLLTPKNSLLMITHYRRL--------L-EFIKPTFIHIME  298 (325)
Q Consensus       255 D~~~~~~i~~~L~~l~~~g~tvIivtHd~~~--------~-~~~~~d~i~vl~  298 (325)
                       ...++.+.++++.+++.|.|+|+++|+.+.        + +.+ +|.|+.|+
T Consensus       140 -~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~l-aDgVI~L~  190 (484)
T TIGR02655       140 -SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFV-SDNVVILR  190 (484)
T ss_pred             -HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEe-eeeEEEEE
Confidence             467888999998888789999999998764        1 333 68888776

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.82  E-value=2.9e-08  Score=105.03  Aligned_cols=63  Identities=27%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CCChHHHHHHHHHHHHHh--CCCEEEEeCc---CcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHh
Q 020520          223 GFSGGERKRNEILQLAVL--GADLAILDEI---DSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLE  287 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~--~p~lLlLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~  287 (325)
                      ++|.=+.....++.+|-.  ++.++|+|||   |+.+|..+  ....++..+.+. +.++|++||+.++..
T Consensus       666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~el~~  734 (854)
T PRK05399        666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHELTE  734 (854)
T ss_pred             CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHHHHH
Confidence            478888888888888866  8999999999   99999444  445555555544 578999999966554

>PRK14079 recF recombination protein F; Provisional

Probab=98.80  E-value=1.3e-08  Score=97.33  Aligned_cols=77  Identities=14%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020520          223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF  293 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~  293 (325)
                      .+|+||++++++|+.|+         .+|+++|||||+++||...+..+.+.|....   .++|-.|+    .... +++
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~----~~~~-~~~  334 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTE----APPG-AAL  334 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCC----CCCC-Cce
Confidence            48999999999999999         8999999999999999999999999986542   23333333    2333 588


Q ss_pred             EEEEeCCEEEEEcC
Q 020520          294 IHIMEDGRIIKTGD  307 (325)
Q Consensus       294 i~vl~~G~iv~~g~  307 (325)
                      ++.+.+|++.-+.+
T Consensus       335 ~~~~~~~~~~~~~~  348 (349)
T PRK14079        335 TLRIEAGVFTPEAP  348 (349)
T ss_pred             EEEEeccEecCCCC
Confidence            99999998764443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.76  E-value=1.4e-08  Score=112.18  Aligned_cols=63  Identities=22%  Similarity=0.241  Sum_probs=53.8

Q ss_pred             cccCCCCCChHHHHHHH----HHHH--------HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 020520          217 NRNVNEGFSGGERKRNE----ILQL--------AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYR  283 (325)
Q Consensus       217 ~~~~~~~LSgGqrQRv~----iAra--------L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~  283 (325)
                      ++..+ .||||||||++    +|++        +..+|+++||||||+|||+.+...++++|.++   +.++||+||++
T Consensus      1242 ~~~~~-~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1242 THRFG-PASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred             hcccc-CCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence            33444 59999999996    5755        44799999999999999999999999999988   67899999965

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.75  E-value=1.9e-08  Score=87.77  Aligned_cols=49  Identities=24%  Similarity=0.243  Sum_probs=41.6

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN  144 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~  144 (325)
                      ..+=+.+.+++|+.++|+||||||||||+++|+|+  .+|+.|.|.+.+..
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~--i~~~~~~i~ied~~   62 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAF--IPPDERIITIEDTA   62 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--cCCCCCEEEECCcc
Confidence            34445667899999999999999999999999998  56889999997643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.71  E-value=9e-07  Score=93.60  Aligned_cols=50  Identities=12%  Similarity=-0.025  Sum_probs=44.5

Q ss_pred             HHhCCCEEEEeCcCcCCC-HHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020520          238 AVLGADLAILDEIDSGLD-VDALRDVAKAVNGLLTPKNSLLMITHYRRLLE  287 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~  287 (325)
                      +..+|.++++|||...|| +...+.+.+.++.+++.|..++++||+++.+.
T Consensus       639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~  689 (800)
T PRK13898        639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDAS  689 (800)
T ss_pred             hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            456899999999999999 88899999999999887889999999987654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.70  E-value=7e-08  Score=95.40  Aligned_cols=35  Identities=34%  Similarity=0.603  Sum_probs=31.4

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++++.++.+.+|++++++||||+||||++..|++.
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHH
Confidence            45667777889999999999999999999999995

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.69  E-value=1.5e-08  Score=91.01  Aligned_cols=39  Identities=18%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHh--CCCCCCCCccEEEECC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLV--GHPDYEVTEGSVVFKG  142 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~--Gl~~~~p~~G~I~~~g  142 (325)
                      -+++|++++|.|++|+|||||...++  ++   .+..+-+++..
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~   56 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTT   56 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEc
Confidence            58899999999999999999998654  43   23334456654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PLN03210 Resistant to P

Probab=98.68  E-value=8.8e-08  Score=104.89  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             eEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE
Q 020520           98 VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE  143 (325)
Q Consensus        98 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~  143 (325)
                      +++..+.+++++|+|++|+|||||++.+.+.. ....+|.+.+++.
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l-~~~F~g~vfv~~~  244 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRL-SRQFQSSVFIDRA  244 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHH-hhcCCeEEEeecc
Confidence            56778899999999999999999999997642 2345788888753

syringae 6; Provisional

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.67  E-value=1.6e-08  Score=88.93  Aligned_cols=111  Identities=23%  Similarity=0.283  Sum_probs=61.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC--CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM--EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR  184 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~--~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~  184 (325)
                      ++||+|+||||||||.++|.++  +  ..|.+.+.+.+-...  ....... .....++.+                   
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~--l--~~~~~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~-------------------   56 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQ--L--GNPKVVIISQDSYYKDLSHEELEE-RKNNNYDHP-------------------   56 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH--h--CCCCeEEEEecccccccccccHHH-hccCCCCCC-------------------
Confidence            5899999999999999999997  3  234444443331110  0000000 000001111                   


Q ss_pred             hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020520          185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV  256 (325)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~  256 (325)
                             ..   ...+.+.+.+..+... +....+.. .+|.|++++..+   .+..++++|+|+|+.+.++
T Consensus        57 -------~~---~~~~~~~~~l~~l~~~-~~~~~p~~-d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          57 -------DA---FDFDLLISHLQDLKNG-KSVEIPVY-DFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             -------Cc---ccHHHHHHHHHHHHCC-CCEecccc-ccccCcccCCce---ecCCCCEEEEechhhccch
Confidence                   00   0011223344444433 22333333 488888876655   5678999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.65  E-value=3.8e-08  Score=96.04  Aligned_cols=84  Identities=13%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc---EEEECCEeCCCCCHHHH-----hhccEEEec
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG---SVVFKGENLLEMEPEER-----SLAGLFMSF  162 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G---~I~~~g~~i~~~~~~~~-----~~~~i~~~~  162 (325)
                      +..+++++ |+|.+|++++|+|+||+|||||+++|+|+  ..++.+   .|-.+|.++..+....+     .+..+++.+
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~--~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~  218 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRY--TQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP  218 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcc--cCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence            46799999 99999999999999999999999999997  455543   33334444333221111     122477788


Q ss_pred             cCCccCCCcchHHHH
Q 020520          163 QSPVEIPGVNNIDFL  177 (325)
Q Consensus       163 Q~~~~~~~~~~~~~~  177 (325)
                      |+...+..+++.++.
T Consensus       219 ~d~s~~~rl~a~e~a  233 (434)
T PRK07196        219 ADESPLMRIKATELC  233 (434)
T ss_pred             CCCChhhhHHHHHHH
Confidence            887665555555443

>TIGR00767 rho transcription termination factor Rho

Probab=98.60  E-value=1.5e-07  Score=90.62  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=60.2

Q ss_pred             hhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCccccee-----------eeEEEEeCCCEEEEEc
Q 020520           44 RHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILK-----------GVNLLVNEGEVHAIMG  112 (325)
Q Consensus        44 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~-----------~vsl~i~~Ge~~~lvG  112 (325)
                      +...+..|..+++...+.....     .......+.++||++.|++ .+.+|+           |+++.|.+|+.++|+|
T Consensus       102 R~~~~~ER~~~Ll~v~~vn~~~-----~e~~~~ri~Fe~LTf~YP~-er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG  175 (415)
T TIGR00767       102 RSPKEGERYFALLKVESVNGDD-----PEKAKNRVLFENLTPLYPN-ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVA  175 (415)
T ss_pred             eccccHhHHHHHhCCCccCCCC-----ccccCCCeEEEEeeecCCC-ccceeecCccccceeeeeeEEEeCCCCEEEEEC
Confidence            3344567777777654432111     1122346999999999986 357896           9999999999999999


Q ss_pred             CCCccHHHHHHHHhCC
Q 020520          113 KNGSGKSTLSKVLVGH  128 (325)
Q Consensus       113 ~NGsGKSTLl~~l~Gl  128 (325)
                      |.|+|||||++.|+..
T Consensus       176 ~~g~GKTtL~~~i~~~  191 (415)
T TIGR00767       176 PPKAGKTVLLQKIAQA  191 (415)
T ss_pred             CCCCChhHHHHHHHHh
Confidence            9999999999999885

Members of this family differ in the specificity of RNA binding.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.55  E-value=1.1e-06  Score=76.47  Aligned_cols=66  Identities=14%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             HHHHHHhcCCccccccccCCCCCChHHHHHHH--HHHHHHh-CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC
Q 020520          202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNE--ILQLAVL-GADLAILDEIDSGLDVDALRDVAKAVNGLLTP  272 (325)
Q Consensus       202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~--iAraL~~-~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~  272 (325)
                      +.+.++..++..-....+.. .+|+||+|++.  +++.+-. +++++    |+|++|..+.+.+.+.|.++.++
T Consensus       127 i~~~l~~~~~~~iiv~nK~D-l~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        127 MIEWLKEYGIPVLIVLTKAD-KLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHcCCcEEEEEECcc-cCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence            33445555553223334444 38999999987  5555544 34443    99999999999999999987654

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.54  E-value=1e-07  Score=82.58  Aligned_cols=38  Identities=29%  Similarity=0.528  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE  147 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~  147 (325)
                      +||+++|+|+||||||||+++|+|+  +.+    +.++|.++..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~--l~~----~~i~gd~~~~   39 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAAL--FSA----KFIDGDDLHP   39 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh--cCC----EEECCcccCC
Confidence            5999999999999999999999997  333    6888887743

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.53  E-value=1.3e-06  Score=92.47  Aligned_cols=49  Identities=20%  Similarity=0.049  Sum_probs=43.2

Q ss_pred             HhCCCEEEEeCcCcCCC-HHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020520          239 VLGADLAILDEIDSGLD-VDALRDVAKAVNGLLTPKNSLLMITHYRRLLE  287 (325)
Q Consensus       239 ~~~p~lLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~  287 (325)
                      -.+|+++++|||+.+|| +..++.+.+.++.+++.|.+++++||+++.+.
T Consensus       633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~  682 (811)
T PRK13873        633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID  682 (811)
T ss_pred             cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence            34899999999999999 78899999999999878889999999987553

>PRK08149 ATP synthase SpaL; Validated

Probab=98.50  E-value=1.7e-07  Score=91.31  Aligned_cols=72  Identities=21%  Similarity=0.369  Sum_probs=55.5

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc---cEEEECCEeCCCCCHHHHh---hccEEEeccC
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE---GSVVFKGENLLEMEPEERS---LAGLFMSFQS  164 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~---G~I~~~g~~i~~~~~~~~~---~~~i~~~~Q~  164 (325)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|++.  ..++.   |.|-.+|+++..+....+.   ...+++++..
T Consensus       138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~--~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~  214 (428)
T PRK08149        138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEH--SEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT  214 (428)
T ss_pred             CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcC--CCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence            35799999 99999999999999999999999999997  45565   8888899887655433322   1345566554


Q ss_pred             C
Q 020520          165 P  165 (325)
Q Consensus       165 ~  165 (325)
                      .
T Consensus       215 s  215 (428)
T PRK08149        215 S  215 (428)
T ss_pred             C
Confidence            3

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.48  E-value=1.2e-06  Score=83.71  Aligned_cols=45  Identities=11%  Similarity=0.147  Sum_probs=35.3

Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      +++++|-++|+++++||+.   |.++....++.    +..|.+|+.+.|-.+
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a~tGh~v~~T~Ha~~  231 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALTA----AETGHLVFGTLHTNS  231 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----HHcCCcEEEEEcCCC
Confidence            4677888999999999997   88887655543    345888999999744

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.47  E-value=3.4e-07  Score=89.66  Aligned_cols=54  Identities=24%  Similarity=0.420  Sum_probs=42.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC---EeCCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG---ENLLE  147 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g---~~i~~  147 (325)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|+.. ..+.|.|.+.|   +++..
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~~~vi~liGerg~ev~~  208 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAE-EADVNVIALIGERGREVRE  208 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccc-cCCceEEEEECCCchHHHH
Confidence            4689988 9999999999999999999999999999731 23446676644   55543

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.45  E-value=1.9e-07  Score=91.17  Aligned_cols=66  Identities=24%  Similarity=0.333  Sum_probs=56.8

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN  144 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~  144 (325)
                      .+.++.++++..|.. +..+++++ |.|.+|++++|+|+||+|||||+++|+|+  ..++.|.+.+.|+.
T Consensus       127 p~~~~r~~v~~~l~t-Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~--~~~d~~vi~~iGeR  192 (433)
T PRK07594        127 PPAMVRQPITQPLMT-GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNA--PDADSNVLVLIGER  192 (433)
T ss_pred             CCceeccCHhheeCC-Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCC--CCCCEEEEEEECCC
Confidence            346788888888864 46799999 99999999999999999999999999997  56788888777764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.45  E-value=2.5e-07  Score=65.85  Aligned_cols=34  Identities=38%  Similarity=0.557  Sum_probs=28.5

Q ss_pred             eeeeEEEEeC-CCEEEEEcCCCccHHHHHHHHhCC
Q 020520           95 LKGVNLLVNE-GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        95 L~~vsl~i~~-Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++.++++.+ |+++.|.|+||||||||+.+|.=+
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5556778875 579999999999999999988764

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.44  E-value=7.9e-07  Score=91.15  Aligned_cols=110  Identities=19%  Similarity=0.207  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCCCCCCC--------CccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHH
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--------TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNID  175 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--------~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~  175 (325)
                      ..+.++|+||||+|||||++++.++  ..+        ..+-|.++|..+. ++....         +++ ++.      
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~--~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i---------~~~-llg------  234 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEE--AKKLKHTPFAEDAPFVEVDGTTLR-WDPREV---------TNP-LLG------  234 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh--hhhccCCcccCCCCeEEEechhcc-CCHHHH---------hHH-hcC------
Confidence            3567999999999999999999986  222        2344677765442 111110         000 000      


Q ss_pred             HHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCC
Q 020520          176 FLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD  255 (325)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD  255 (325)
                                    ..   ...........++..|+. +...+.+. .+|||                +|+||| +..||
T Consensus       235 --------------~~---~~~~~~~a~~~l~~~gl~-~~~~g~v~-~asgG----------------vL~LDE-i~~Ld  278 (615)
T TIGR02903       235 --------------SV---HDPIYQGARRDLAETGVP-EPKTGLVT-DAHGG----------------VLFIDE-IGELD  278 (615)
T ss_pred             --------------Cc---cHHHHHHHHHHHHHcCCC-chhcCchh-hcCCC----------------eEEEec-cccCC
Confidence                          00   000111223345666764 34455554 48999                999999 89999


Q ss_pred             HHHHHHHHHHHHh
Q 020520          256 VDALRDVAKAVNG  268 (325)
Q Consensus       256 ~~~~~~i~~~L~~  268 (325)
                      +..+..+++.|.+
T Consensus       279 ~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       279 PLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999975

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=98.44  E-value=5.6e-06  Score=78.77  Aligned_cols=76  Identities=18%  Similarity=0.126  Sum_probs=55.8

Q ss_pred             CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC--C
Q 020520          223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK--P  291 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~--~  291 (325)
                      ..|-||++-+++|.-|+         .+++||||||-+|.||..-+..+++. .+.   +.-++|++-+.+.+....  .
T Consensus       275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~---~~Q~fvT~t~~~~~~~~~~~~  350 (363)
T COG1195         275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IEL---GVQVFVTTTDLEDIDDNLDEN  350 (363)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-ccc---CCeEEEEccCHHHhhhhhhcc
Confidence            37999999999987664         37899999999999999999999888 333   334555665555554221  1


Q ss_pred             cEEEEEeCCEE
Q 020520          292 TFIHIMEDGRI  302 (325)
Q Consensus       292 d~i~vl~~G~i  302 (325)
                      -+++.+.+|+|
T Consensus       351 ~~~f~V~~g~i  361 (363)
T COG1195         351 AQMFHVEDGKI  361 (363)
T ss_pred             ceEEEEeccee
Confidence            25667778876

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.43  E-value=5.8e-06  Score=74.91  Aligned_cols=50  Identities=24%  Similarity=0.387  Sum_probs=35.7

Q ss_pred             HhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccC-CCcEEEEEeCChhHHhh
Q 020520          239 VLGADLAILDEIDSGLDVDALRDVAKAV-NGLLT-PKNSLLMITHYRRLLEF  288 (325)
Q Consensus       239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~-~g~tvIivtHd~~~~~~  288 (325)
                      +.+..++|+||...|=++.....+...+ ..+.+ .+..+|++||+.++...
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~  171 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL  171 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence            4577899999999999998877766544 44454 36789999999887554

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.40  E-value=7.2e-07  Score=68.62  Aligned_cols=50  Identities=24%  Similarity=0.288  Sum_probs=36.7

Q ss_pred             ccCCCCCChHHHH-HHHHHHH------HHh------CCCEEEEeCcCcCCCHHHHHHHHHHHHh
Q 020520          218 RNVNEGFSGGERK-RNEILQL------AVL------GADLAILDEIDSGLDVDALRDVAKAVNG  268 (325)
Q Consensus       218 ~~~~~~LSgGqrQ-Rv~iAra------L~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~  268 (325)
                      +..+ .+||||+| .+.+|.+      +..      .|.+++|||||++||.+..+.++++|++
T Consensus        28 ~~~~-~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   28 RSFG-TLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEGG-GS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             ccCC-CCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            3444 49999995 3333332      223      3799999999999999999999999864

>TIGR00152 dephospho-CoA kinase

Probab=98.36  E-value=5.9e-07  Score=78.36  Aligned_cols=72  Identities=10%  Similarity=-0.045  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH--HhhhCCcEEEEEeCC
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL--LEFIKPTFIHIMEDG  300 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~--~~~~~~d~i~vl~~G  300 (325)
                      -|+-+|..||.++..+|+.+..+|  +.+||...+.+.+.+.+..++|.+||+.+|.+..  +... +|.+++++.+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~-~D~vv~V~~~  133 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL-CDRVIVVDVS  133 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh-CCEEEEEECC
Confidence            388999999999999999998887  7899999999999998886556799999997744  4444 6888887654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.36  E-value=5.6e-07  Score=84.99  Aligned_cols=59  Identities=24%  Similarity=0.380  Sum_probs=48.5

Q ss_pred             EEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020520           82 GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN  144 (325)
Q Consensus        82 ~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~  144 (325)
                      .++..|.. +..+++++ |.+.+|++++|+|+||+|||||+++|+|.  ..++.|.+..-|++
T Consensus        48 ~~~~~l~t-Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~~~~vi~~iGer  106 (326)
T cd01136          48 PIDEVLPT-GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARG--TTADVNVIALIGER  106 (326)
T ss_pred             cceeEcCC-CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCC--CCCCEEEEEEEecC
Confidence            34444543 46799999 99999999999999999999999999997  56788887776644

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.35  E-value=4.7e-06  Score=69.53  Aligned_cols=63  Identities=10%  Similarity=0.072  Sum_probs=40.8

Q ss_pred             HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHH-----HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc
Q 020520          202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA-----VLGADLAILDEIDSGLDVDALRDVAKAVNGL  269 (325)
Q Consensus       202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL-----~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l  269 (325)
                      +...+...+...-....+.. .+|++++++.......     ...++++    |+|++|....+++.+.|.++
T Consensus       102 ~~~~l~~~~~~vi~v~nK~D-~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         102 MLDWLEELGIPFLVVLTKAD-KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             HHHHHHHcCCCEEEEEEchh-cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence            34445555432122233343 3789988887665553     2345655    99999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.35  E-value=7e-07  Score=77.79  Aligned_cols=54  Identities=22%  Similarity=0.267  Sum_probs=37.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS  164 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~  164 (325)
                      |++++|+||||||||||+++|++.  ..+   .+.+.+..+....... ....+.+.+|+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~--~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~   55 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQR--EQT---QLLVAHRYITRPASAG-SENHIALSEQE   55 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc--CCC---eEEEcCEECCCccchh-HHhheeEcHHH
Confidence            789999999999999999999996  322   5778887765432211 11235555554

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.34  E-value=4e-07  Score=80.19  Aligned_cols=26  Identities=38%  Similarity=0.598  Sum_probs=24.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++|++++|+||||||||||+++|++.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            58999999999999999999999996

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.34  E-value=4.6e-07  Score=90.26  Aligned_cols=63  Identities=19%  Similarity=0.352  Sum_probs=55.8

Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL  146 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~  146 (325)
                      +.|++..|+.  +.+++++++.+..|+.++|+|+||+|||||++.|.|+  .+|.+|++.+.+..+.
T Consensus       187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gl--lpp~~g~e~le~~~i~  249 (506)
T PRK09862        187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGL--LPDLSNEEALESAAIL  249 (506)
T ss_pred             ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhcc--CCCCCCcEEEecchhh
Confidence            4588888864  5699999999999999999999999999999999998  6789999998876653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.31  E-value=2.1e-06  Score=73.97  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=26.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEE
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF  140 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~  140 (325)
                      |++++|+||||||||||++.|++.  +.+ .|.+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~--~~~-~~~~~~   33 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARAR--LAG-DPRVHF   33 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH--cCc-CCcEEE
Confidence            678999999999999999999996  322 355544

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.28  E-value=9.8e-07  Score=86.47  Aligned_cols=52  Identities=25%  Similarity=0.385  Sum_probs=46.6

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|.  ..++.|.|.+.|+.-
T Consensus       150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~--~~~d~~vi~~iGer~  201 (441)
T PRK09099        150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARG--TQCDVNVIALIGERG  201 (441)
T ss_pred             Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCC--CCCCeEEEEEEccCh
Confidence            46799999 99999999999999999999999999997  567889988888653

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.28  E-value=1.3e-06  Score=81.44  Aligned_cols=70  Identities=11%  Similarity=0.017  Sum_probs=44.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHH
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLH  178 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~  178 (325)
                      .++||.|+||||||||+++|.++....|.+|+|.+.+.|-...+...+...+  + .|.......++...++.
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g--~-~~~~g~P~s~D~~~l~~  132 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERN--L-MKKKGFPESYDMHRLVK  132 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcC--C-ccccCCChhccHHHHHH
Confidence            4899999999999999999999732236788888766654444444443333  2 24443333344444433

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00235 udk uridine kinase

Probab=98.25  E-value=5.1e-07  Score=79.98  Aligned_cols=26  Identities=31%  Similarity=0.528  Sum_probs=24.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++|++++|+|+||||||||++.|+++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999999997

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.24  E-value=6.5e-06  Score=66.77  Aligned_cols=55  Identities=16%  Similarity=0.053  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-----CCcEEEEEeCChh
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-----PKNSLLMITHYRR  284 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvIivtHd~~  284 (325)
                      .+......+...++.++++||.-.. +......+.+.+..+..     .+..+|+++++..
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            4455556666778999999998665 56677788888888753     4678899988653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.21  E-value=1.2e-06  Score=85.66  Aligned_cols=59  Identities=22%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             EEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520           83 LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus        83 ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      ++..+.. +..+++++ |.+.+|++++|+|+||+|||||+++|+|.  ..++.|.+...|++-
T Consensus       125 i~~~l~t-G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~--~~~~~~vi~~iG~~~  183 (422)
T TIGR02546       125 IDQPLPT-GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARG--ASADVNVIALIGERG  183 (422)
T ss_pred             cccccCC-Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCC--CCCCEEEEEEEccCC
Confidence            3334432 46799999 99999999999999999999999999997  568888888766543

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.20  E-value=2.2e-06  Score=83.53  Aligned_cols=60  Identities=20%  Similarity=0.328  Sum_probs=50.0

Q ss_pred             EEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020520           83 LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL  146 (325)
Q Consensus        83 ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~  146 (325)
                      ++..|.. +..+++++ |.+.+|++++|+|+||+|||||+++|++.  ..++.|.|.+.|++..
T Consensus       117 ~~~~~~t-Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~--~~~~~gvi~~~Ger~~  176 (413)
T TIGR03497       117 IRDPLET-GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARN--AKADINVIALIGERGR  176 (413)
T ss_pred             hhhhccc-cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCeEEEEEEccchH
Confidence            3444543 46799999 99999999999999999999999999997  5688898888887543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PLN02796 D-glycerate 3-kinase

Probab=98.19  E-value=5.1e-07  Score=85.47  Aligned_cols=54  Identities=20%  Similarity=0.187  Sum_probs=44.2

Q ss_pred             ccceeeeEEEE---eCCCE-----EEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeCCC
Q 020520           92 QEILKGVNLLV---NEGEV-----HAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENLLE  147 (325)
Q Consensus        92 ~~iL~~vsl~i---~~Ge~-----~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i~~  147 (325)
                      ..+++++++++   ++|+.     +||+|+||||||||++.|.++  +.+   ..|.|.++|..+..
T Consensus        79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~l--L~~~g~~~g~IsiDdfYLt~  143 (347)
T PLN02796         79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYL--FNATGRRAASLSIDDFYLTA  143 (347)
T ss_pred             HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHH--hcccCCceeEEEECCcccch
Confidence            35788888887   67876     999999999999999999997  333   36889999987644

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.18  E-value=2.1e-06  Score=83.69  Aligned_cols=64  Identities=25%  Similarity=0.301  Sum_probs=51.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN  144 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~  144 (325)
                      .++-..++..|.. +..+++.+ |.+.+|++++|+|+||+|||||+++|+++  ..++.+.+...|++
T Consensus       111 ~~~R~~~~~~~~t-Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~--~~~~~~vi~~iGer  174 (411)
T TIGR03496       111 PLKRAPIDEPLDV-GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARY--TEADVVVVGLIGER  174 (411)
T ss_pred             HHhccCcceEeee-eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcC--CCCCEEEEEEEecC
Confidence            4555666667753 46789999 99999999999999999999999999997  56777766666654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		1e-66
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		1e-66
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		2e-64
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		2e-10
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		3e-10
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		3e-10
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		8e-10
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		1e-09
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		2e-09
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-09
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		3e-09
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		5e-09
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		5e-09
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		5e-09
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		9e-09
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		1e-08
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		4e-08
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		4e-08
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		5e-08
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		9e-08
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		9e-08
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		1e-07
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-07
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		3e-07
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		3e-07
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		9e-07
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		1e-06
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		8e-06
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		8e-06
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		1e-05
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-05
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		2e-05
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		2e-05
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		3e-05
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		5e-05
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		6e-05
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		7e-05
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		9e-05
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		1e-04
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		1e-04
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		2e-04
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-04
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-04
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		2e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		2e-04
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-04
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-04
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		3e-04
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		3e-04
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		4e-04
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		6e-04
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		6e-04
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		6e-04
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		6e-04
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		6e-04
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		6e-04
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		9e-04

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/230 (53%), Positives = 165/230 (71%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
           IL+G++L V+ GEVHAIMG NGSGKSTLS  L G  DYEVT G+V FKG++LL + PE+R
Sbjct: 16  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
           +  G+FM+FQ PVEIPGV+N  FL  A NA R   GQ  +   +F   +  K+  L M  
Sbjct: 76  AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 135
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK 273
           D L R+VN GFSGGE+KRN+ILQ+AVL  +L ILDE DSGLD+DAL+ VA  VN L   K
Sbjct: 136 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGK 195
Query: 274 NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS 323
            S +++THY+R+L++IKP ++H++  GRI+K+GD ++   LEE GY  ++
Sbjct: 196 RSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLT 245

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 168/237 (70%)
Query: 87  IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL 146
           ++   + IL+G++L V+ GEVHAIMG NGSGKSTLS  L G  DYEVT G+V FKG++LL
Sbjct: 28  VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87
Query: 147 EMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL 206
            + PE+R+  G+FM+FQ PVEIPGV+N  FL  A NA R   GQ  +   +F   +  K+
Sbjct: 88  ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 147
Query: 207 ERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV 266
             L M  D L R+VN GFSGGE+KRN+ILQ+AVL  +L ILDE DSGLD+DAL+ VA  V
Sbjct: 148 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 267 NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS 323
           N L   K S +++THY+R+L++IKP ++H++  GRI+K+GD ++   LEE GY  ++
Sbjct: 208 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLT 264

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 169/246 (68%), Gaps = 6/246 (2%)
Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           L++  L A I    + ILKGVNL+V +GEVHA+MG NG+GKSTL K+L G P+Y V  G 
Sbjct: 4   LEIRDLWASI--DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE 61
Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
           ++  GEN+LE+ P+ER+  GLF++FQ PVE+PGV   +FL +A  A   KLG+ E+G  E
Sbjct: 62  ILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQA---KLGR-EVGVAE 117
Query: 198 FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD 257
           F+  +   LE L     +L+R +NEGFSGGE+KRNEILQL VL    A+LDE DSGLD+D
Sbjct: 118 FWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID 177
Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317
           AL+ VA+ VN +  P    L+ITHY+R+L +I+P  +H+M DGR++ TG   +A  LE  
Sbjct: 178 ALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAK 237
Query: 318 GYKAIS 323
           GY+ + 
Sbjct: 238 GYEWLK 243

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L GV++ VN+G+V  I+G NGSGKSTL  V+ G    +  EG V F+ +++   EP E  
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE------FYAYLYPKLER 208
             G+  +FQ+P  +  +  ++ L +            EI P E      FY    PK E 
Sbjct: 81  HYGIVRTFQTPQPLKEMTVLENLLIG-----------EICPGESPLNSLFYKKWIPKEEE 129
Query: 209 LSMKT----DFL------NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
           +  K     +FL      +R   E  SGG+ K  EI +  +    + ++DE  +G+    
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTG 306
             D+   V  L     + L+I H   + L +I    +++M +G+II  G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYID--HLYVMFNGQIIAEG 235

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 18/216 (8%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L+ +NL +  G+  A++G++GSGKST++ ++     Y++ EG ++  G +L      E +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--YDIDEGEILMDGHDL-----REYT 411
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYN----ARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           LA    S ++ V +   N   F     N    AR  +  + +I      AY    + ++ 
Sbjct: 412 LA----SLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
              D +        SGG+R+R  I +  +  + + ILDE  S LD ++ R +  A++ L 
Sbjct: 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             + SL+ I H  RL    K   I ++EDG I++ G
Sbjct: 528 KNRTSLV-IAH--RLSTIEKADEIVVVEDGVIVERG 560

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L GV++ VN+G+V  I+G NGSGKSTL  V+ G    +  EG V F+ +++   EP E  
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE------FYAYLYPKLER 208
             G+  +FQ+P  +  +  ++ L +            EI P E      FY    PK E 
Sbjct: 81  HYGIVRTFQTPQPLKEMTVLENLLIG-----------EINPGESPLNSLFYKKWIPKEEE 129
Query: 209 LSMKT----DFL------NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
           +  K     +FL      +R   E  SGG+ K  EI +  +    + ++D+  +G+    
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTG 306
             D+   V  L     + L+I H   + L +I    +++M +G+II  G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYID--HLYVMFNGQIIAEG 235

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 18/219 (8%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L+ +NL +  G+  A++G++GSGKST++ ++     Y++ EG ++  G +L      E +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--YDIDEGHILMDGHDL-----REYT 411
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYN----ARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           LA    S ++ V +   N   F     N    AR  +  + +I      AY    + ++ 
Sbjct: 412 LA----SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD 467
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
              D +        SGG+R+R  I +  +  + + ILDE  S LD ++ R +  A++ L 
Sbjct: 468 NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
             + SL+ I H  RL    +   I ++EDG I++ G  S
Sbjct: 528 KNRTSLV-IAH--RLSTIEQADEIVVVEDGIIVERGTHS 563

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 33/229 (14%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L GV++ V +G+V  I+G NGSGKSTL  V+ G    +  EG V F+ +++   EP E  
Sbjct: 23  LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE------FYAYLYPKLER 208
             G+  +FQ+P  +  +  ++ L +            EI P E      FY    PK E 
Sbjct: 81  HYGIVRTFQTPQPLKEMTVLENLLIG-----------EINPGESPLNSLFYKKWIPKEEE 129
Query: 209 LSMKT----DFL------NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
           +  K     +FL      +R   E  SGG+ K  EI +  +    + ++DE  +G+    
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRL-LEFIKPTFIHIMEDGRIIKTG 306
             D+   V  L     + L+I H   + L +I    +++M +G+II  G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYID--HLYVMFNGQIIAEG 235

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           +++ L+ V+L++NEGE   + G  GSGKSTL +++ G    E T G V++ GE   +   
Sbjct: 19  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLYDGER--KKGY 74
Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           E R   G+  +FQ P +      + F  +A+  +      P+  P+     +   +E + 
Sbjct: 75  EIRRNIGI--AFQYPEDQFFAERV-FDEVAFAVKN---FYPDRDPV---PLVKKAMEFVG 125
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +  D     V    SGGE++R  I  + V   D+ ILDE   GLD +   D+ + V    
Sbjct: 126 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 271 TPKNSLLMITH 281
           T   ++++I+H
Sbjct: 186 TLGKTVILISH 196

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           +++ L+ V+L++NEGE   + G  GSGKSTL +++ G    E T G V++ GE   +   
Sbjct: 21  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLYDGER--KKGY 76
Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           E R   G+  +FQ P +      + F  +A+  +      P+  P+     +   +E + 
Sbjct: 77  EIRRNIGI--AFQYPEDQFFAERV-FDEVAFAVKN---FYPDRDPV---PLVKKAMEFVG 127
Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +  D     V    SGGE++R  I  + V   D+ ILDE   GLD +   D+ + V    
Sbjct: 128 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 187
Query: 271 TPKNSLLMITH 281
           T   ++++I+H
Sbjct: 188 TLGKTVILISH 198

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 18/221 (8%)
Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           ++    LK +N  +  G   A++G  GSGKST++K+L    D    EG +   G+N+ + 
Sbjct: 30  QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---AEGDIKIGGKNVNKY 86
Query: 149 EPEE-RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLG--QPEIGPIEFYAYLYPK 205
                RS+ G+      P +    N      + YN    KL     E+      A LY  
Sbjct: 87  NRNSIRSIIGIV-----PQDTILFNET----IKYNILYGKLDATDEEVIKATKSAQLYDF 137
Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
           +E L  K D +  N     SGGER+R  I +  +    + I DE  S LD        KA
Sbjct: 138 IEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           V  L   + +L++I H  RL        I ++  G+I++ G
Sbjct: 198 VEDLRKNR-TLIIIAH--RLSTISSAESIILLNKGKIVEKG 235

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           IL  +NL + +GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   +P   
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R   G+ +     +    ++NI   +   +  +          + + A L    + +S  
Sbjct: 76  RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 125
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
            +  N  V E   G SGG+R+R  I +  V    + I DE  S LD ++    +R++ K 
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             G      ++++I H  RL        I +ME G+I++ G
Sbjct: 186 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 219

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           IL  +NL + +GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   +P   
Sbjct: 20  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R   G+ +     +    ++NI   +   +  +          + + A L    + +S  
Sbjct: 78  RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 127
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
            +  N  V E   G SGG+R+R  I +  V    + I DE  S LD ++    +R++ K 
Sbjct: 128 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             G      ++++I H  RL        I +ME G+I++ G
Sbjct: 188 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 221

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           IL  +NL + +GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   +P   
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R   G+ +     +    ++NI   +   +  +          + + A L    + +S  
Sbjct: 82  RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 131
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
            +  N  V E   G SGG+R+R  I +  V    + I DE  S LD ++    +R++ K 
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             G      ++++I H  RL        I +ME G+I++ G
Sbjct: 192 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 225

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 27/221 (12%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           IL  +NL + +GEV  I+G+ GSGKSTL+K++     Y    G V+  G +L   +P   
Sbjct: 20  ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R   G+ +     +    ++NI   +   +  +          + + A L    + +S  
Sbjct: 78  RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 127
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
            +  N  V E   G SGG+R+R  I +  V    + I DE  S LD ++    +R++ K 
Sbjct: 128 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             G      ++++I H  RL        I +ME G+I++ G
Sbjct: 188 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 221

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           IL  +NL + +GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   +P   
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R   G+ +     +    ++NI   +   +  +          + + A L    + +S  
Sbjct: 82  RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 131
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA----LRDVAKA 265
            +  N  V E   G SGG+R+R  I +  V    + I D+  S LD ++    +R++ K 
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKI 191
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             G      ++++I H  RL        I +ME G+I++ G
Sbjct: 192 CKG-----RTVIIIAH--RLSTVKNADRIIVMEKGKIVEQG 225

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 19/217 (8%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           IL  +NL + +GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   +P   
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R   G+ +     +    ++NI   +   +  +          + + A L    + +S  
Sbjct: 76  RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 125
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
            +  N  V E   G SGG+R+R  I +  V    + I DE  S LD ++   + + ++ +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
              +  +++     RL        I +ME G+I++ G
Sbjct: 186 CKGRTVIIIAA---RLSTVKNADRIIVMEKGKIVEQG 219

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 19/217 (8%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           IL  +NL + +GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   +P   
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R   G+ +     +    ++NI   +   +  +          + + A L    + +S  
Sbjct: 82  RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK----------VIYAAKLAGAHDFISEL 131
Query: 213 TDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
            +  N  V E   G SGG+R+R  I +  V    + I DE  S LD ++   + + ++ +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
              +  +++     RL        I +ME G+I++ G
Sbjct: 192 CKGRTVIIIAA---RLSTVKNADRIIVMEKGKIVEQG 225

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 16/214 (7%)
Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           EILKG++L V +GE  +I+G +GSGKSTL  +L G  D   TEG V  +G+ +     +E
Sbjct: 18  EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP-TEGKVFLEGKEVDYTNEKE 75
Query: 153 RSL---AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
            SL     L   FQ    IP +  ++ + +       K+G+P+    E   YL  +L   
Sbjct: 76  LSLLRNRKLGFVFQFHYLIPELTALENVIVPM----LKMGKPKKEAKERGEYLLSELGL- 130
Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
               D L+R   E  SGGE++R  I +       L   DE    LD    + V      +
Sbjct: 131 ---GDKLSRKPYE-LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303
                S++M+TH R L E    T    M+DG+++
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTL--EMKDGKVV 218

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 98  VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157
           +NL + +GE   ++G +G GK+T  +++ G    E TEG + F   ++  + P++R+++ 
Sbjct: 30  LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE--EPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN 217
           +F S+     +    NI     A+  + +K  + EI     +A    ++E L      LN
Sbjct: 88  VFQSYAVWPHMTVYENI-----AFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 218 RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD---ALRDVAKAVNGLLTPKN 274
           R   +  SGG+R+R  + +  V+  D+ ++DE  S LD     A+R   K +   L  K 
Sbjct: 137 RYPAQ-LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL--KV 193
Query: 275 SLLMITH 281
           + + +TH
Sbjct: 194 TTIYVTH 200

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 139/295 (47%), Gaps = 46/295 (15%)
Query: 48  SLNRVTAALSAVDSPLKSSSDGQDEK----SQPL------LQVTGLTAVIAESKQEILKG 97
           S   +T + +++D   +   +  D K    +QP+      + +  ++    +++  ILK 
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 98  VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLEMEPEERSLA 156
           +NL + +GE  A +G +G GKSTL  ++   P  Y+VT G ++  G N+ +       L 
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLI---PRFYDVTSGQILIDGHNIKDF------LT 410
Query: 157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFL 216
           G   S ++ + +   +NI F           LG+P     E       +  +++   DF+
Sbjct: 411 G---SLRNQIGLVQQDNILFSDTV--KENILLGRPTATDEEVV-----EAAKMANAHDFI 460
Query: 217 NRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
             N+ +G+           SGG+++R  I ++ +    + ILDE  S LD+++   + +A
Sbjct: 461 -MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK 320
           ++ +L+   + L++ H  RL        I ++E+G I++TG      + ++G Y+
Sbjct: 520 LD-VLSKDRTTLIVAH--RLSTITHADKIVVIENGHIVETGTHR-ELIAKQGAYE 570

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 98  VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG 157
           +NL + +GE   ++G +G GK+T  +++ G    E TEG + F   ++  + P++R+++ 
Sbjct: 31  LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE--EPTEGRIYFGDRDVTYLPPKDRNISM 88
Query: 158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN 217
           +F S+     +    NI     A+  + +K  + EI     +A    ++E L      LN
Sbjct: 89  VFQSYAVWPHMTVYENI-----AFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 218 RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD---ALRDVAKAVNGLLTPKN 274
           R   +  SGG+R+R  + +  V+  D+ ++DE  S LD     A+R   K +   L  K 
Sbjct: 138 RYPAQ-LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL--KV 194
Query: 275 SLLMITH 281
           + + +TH
Sbjct: 195 TTIYVTH 201

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 28/223 (12%)
Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           K+EILKG++  + EGE+  ++G NG+GK+T  +++      + + G V   G+N++E   
Sbjct: 27  KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRII--STLIKPSSGIVTVFGKNVVEEPH 84
Query: 151 EERSL-------AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLY 203
           E R L       AG + + Q      G+  + F+   Y +   ++ +      E      
Sbjct: 85  EVRKLISYLPEEAGAYRNMQ------GIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE 138
Query: 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA 263
              +R+S             +S G  ++  I +  ++   LAILDE  SGLDV   R+V 
Sbjct: 139 KIKDRVST------------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           K +        ++L+ +H    +EF+    I ++ +G I++TG
Sbjct: 187 KILKQASQEGLTILVSSHNMLEVEFLCDR-IALIHNGTIVETG 228

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL----LEM 148
           E+LKG+N+ + EGEV  ++G +GSGKST  + L    D++  EG ++  G NL      +
Sbjct: 17  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTNL 74
Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
                 +  +F  F     +  +NNI    M    R+    + E   +E        L++
Sbjct: 75  NKVREEVGMVFQRFNLFPHMTVLNNITLAPM--KVRKWPREKAEAKAMEL-------LDK 125
Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
           + +K         +  SGG+ +R  I +   +   + + DE  S LD + + +V   +  
Sbjct: 126 VGLKDK--AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 269 LLTPKNSLLMITH 281
           L     +++++TH
Sbjct: 184 LANEGMTMVVVTH 196

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 18/218 (8%)
Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL----LEM 148
           E+LKG+N+ + EGEV  ++G +GSGKST  + L    D++  EG ++  G NL      +
Sbjct: 38  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTNL 95
Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
                 +  +F  F     +  +NNI    M      R+  + E   +E        L++
Sbjct: 96  NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPRE--KAEAKAMEL-------LDK 146
Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
           + +K         +  SGG+ +R  I +   +   + + DE  S LD + + +V   +  
Sbjct: 147 VGLKDK--AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           L     +++++TH       +    +  M+ G II+ G
Sbjct: 205 LANEGMTMVVVTHEMGFAREVGDRVL-FMDGGYIIEEG 241

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L  V+  + +G+  A++G++GSGKST++ +      Y+V  GS+   G ++ + +    +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF--YDVDSGSICLDGHDVRDYKLT--N 414
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD 214
           L   F      V +   N+    ++AY A   +  + +I      A+    +E +    D
Sbjct: 415 LRRHFALVSQNVHL--FNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN 274
            +        SGG+R+R  I +  +  A + ILDE  S LD ++ R +  A++ L   K 
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK- 530
Query: 275 SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           ++L+I H  RL    +   I ++++G II+ G
Sbjct: 531 TVLVIAH--RLSTIEQADEILVVDEGEIIERG 560

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L  +NL + +GE  A++G +GSGKSTL   + G   Y+ T G + F  +++ E+ P++R+
Sbjct: 19  LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--YKPTSGKIYFDEKDVTELPPKDRN 76
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD 214
           +  +F ++     +    NI F      A R ++ +              ++ ++     
Sbjct: 77  VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----------VREVAKMLHIDK 125
Query: 215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
            LNR   +  SGG+++R  I +  V   ++ +LDE  S LD
Sbjct: 126 LLNRYPWQ-LSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           +ILKG+NL V  G+  A++G +G GKST  +++     Y+  +G V   G+++  +    
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR--RRKLGQPEIGPIEFYAYLYPKLERL 209
            R + G+    Q PV            +A N R  R  +   EI      A  Y  + +L
Sbjct: 462 LREIIGVVS--QEPVLFATT-------IAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
             + D L        SGG+++R  I +  V    + +LDE  S LD ++   V  A++  
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
              + +++ I H  RL        I   + G I++ G+
Sbjct: 573 REGRTTIV-IAH--RLSTVRNADVIAGFDGGVIVEQGN 607

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           +ILKG+NL V  G+  A++G +G GKST  +++     Y+  +G V   G+++  +    
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 153 -RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR--RRKLGQPEIGPIEFYAYLYPKLERL 209
            R + G+    Q PV            +A N R  R  +   EI      A  Y  + +L
Sbjct: 462 LREIIGVVS--QEPVLFATT-------IAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
             + D L        SGG+++R  I +  V    + +LDE  S LD ++   V  A++  
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
              + +++ I H  RL        I   + G I++ G+
Sbjct: 573 REGRTTIV-IAH--RLSTVRNADVIAGFDGGVIVEQGN 607

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
           + +GEV  I+G NG GK+T  K+L G    E TEG V +      + +  +    G    
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
             S ++   +N+        N  + +L +P +G I+ Y                 +RNV 
Sbjct: 437 LLSKIDSSKLNS--------NFYKTELLKP-LGIIDLY-----------------DRNV- 469
Query: 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMIT 280
           E  SGGE +R  I    +  AD+ +LDE  + LDV+    V++A+  L+   + + L++ 
Sbjct: 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 281 HYRRLLEFIKPTFI 294
           H   +++++    I
Sbjct: 530 HDVLMIDYVSDRLI 543

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 24/238 (10%)
Query: 93   EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
            EILKG++  V  G+  A++G +G GKST+  +L     Y+   G +   G  +  + PE 
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEH 1150
Query: 153  -RSLAGLFMSFQSPVEIPGVNNIDF------LHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
             RS   +     +  +     NI +      + MA      +L         F A L   
Sbjct: 1151 TRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH----NFIAELPEG 1206
Query: 206  LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
             E     T   +R      SGG+++R  I +  V    + +LDE  S LD ++ + V +A
Sbjct: 1207 FE-----TRVGDRGTQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 266  VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYKAIS 323
            ++     + + ++I H  RL   +    I ++ +G II+ G  +   + E+G Y  ++
Sbjct: 1260 LDRAREGR-TCIVIAH--RLNTVMNADCIAVVSNGTIIEKGTHT-QLMSEKGAYYKLT 1313

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
           + +GEV  I+G NG GK+T  K+L G    E TEG V +      + +  +    G    
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
             S ++   +N+        N  + +L +P +G I+ Y                 +RNV 
Sbjct: 423 LLSKIDSSKLNS--------NFYKTELLKP-LGIIDLY-----------------DRNV- 455
Query: 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMIT 280
           E  SGGE +R  I    +  AD+ +LDE  + LDV+    V++A+  L+   + + L++ 
Sbjct: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
Query: 281 HYRRLLEFIKPTFI 294
           H   +++++    I
Sbjct: 516 HDVLMIDYVSDRLI 529

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 33/179 (18%)
Query: 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT--EGSVVFKGENLLEMEPEERSLAGLFMS 161
           EGE+  I+G NG GK+T +++LVG    E+T  EGSV  + + +L  +P+      +F +
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVG----EITADEGSVTPE-KQILSYKPQR-----IFPN 342
Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL-ERLSMKTDFLNRNV 220
           +   V+        +L    NA +  L           ++ + ++ +RL++    L  NV
Sbjct: 343 YDGTVQ-------QYLE---NASKDALSTS--------SWFFEEVTKRLNLHR-LLESNV 383
Query: 221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI 279
           N+  SGGE ++  I       ADL +LD+  S LDV+    VAKA+  +   + ++  I
Sbjct: 384 ND-LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 25/216 (11%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYEVTEGSVVFKGENLLEMEPEE 152
           L  ++L V  GE   I+G  G+GK+   +++ G   PD     G ++  G+++ ++ PE+
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD----SGRILLDGKDVTDLSPEK 71
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
             +A ++ ++     +    N++F       R +K+  P+   ++    L  K+E L   
Sbjct: 72  HDIAFVYQNYSLFPHMNVKKNLEF-----GMRMKKIKDPK-RVLDTARDL--KIEHL--- 120
Query: 213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP 272
              L+RN     SGGE++R  + +  V    + +LDE  S LD    ++ A+ +  +L  
Sbjct: 121 ---LDRN-PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT-QENAREMLSVLHK 175
Query: 273 KNSL--LMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           KN L  L ITH +     I    I ++ DG++I+ G
Sbjct: 176 KNKLTVLHITHDQTEAR-IMADRIAVVMDGKLIQVG 210

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEE 152
           ++GV+  + EGE+  ++G +GSGK+T+ +++ G   P    T+G V   G+ + ++ P++
Sbjct: 31  VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP----TKGDVWIGGKRVTDLPPQK 86
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK 212
           R++  +F ++     +   +N+ F       R +++ + E+         + +LE     
Sbjct: 87  RNVGLVFQNYALFQHMTVYDNVSF-----GLREKRVPKDEMDARVRELLRFMRLE----- 136
Query: 213 TDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
             + NR  +E  SGG+++R  + +       + + DE  + +D    R++
Sbjct: 137 -SYANRFPHE-LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 77  LLQVTGLTAV--IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYE 132
           +++V  L AV  + E   +   G++L + E  V AI+G++ SGKST+ + +     P+  
Sbjct: 4   IIRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGR 63
Query: 133 VTEGSVVFKGENLLEMEPEE------RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR 186
           +  G V++KG++LL M  EE      + +A +  + Q  +  P +  I+       A   
Sbjct: 64  ILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLN-PTMKVIEHFKDTVEAHGV 122
Query: 187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAI 246
           +    E+  IE  +    KL  + +  + +  +     SGG ++R  I    +L   + I
Sbjct: 123 RWSHSEL--IEKAS---EKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLI 177
Query: 247 LDEIDSGLDV 256
           LDE  S LDV
Sbjct: 178 LDEPTSALDV 187

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 17/218 (7%)
Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM-EP 150
           +E L+ V+  V  G+  A++G +G+GKST+ ++L     Y+++ G +   G+++ ++ + 
Sbjct: 67  RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF--YDISSGCIRIDGQDISQVTQA 124
Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL- 209
             RS  G+      P +    N+    ++ Y   R   G  E+      A ++  +    
Sbjct: 125 SLRSHIGVV-----PQDTVLFNDTIADNIRYG--RVTAGNDEVEAAAQAAGIHDAIMAFP 177
Query: 210 -SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
              +T    R +    SGGE++R  I +  +    + +LDE  S LD    R +  ++  
Sbjct: 178 EGYRTQVGERGLK--LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235
Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           +   + +++ + H  RL   +    I +++DG I++ G
Sbjct: 236 VCANRTTIV-VAH--RLSTVVNADQILVIKDGCIVERG 270

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 17/190 (8%)
Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
           P ++V  L     + K   + GV+  V +GE  A++G +G GK+T   +L G   Y+ T 
Sbjct: 2   PSIRVVNLKKYFGKVKA--VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--YKPTS 57
Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGP 195
           G + F    + ++ P+ R +    M FQ+    P +    F ++A+  R R++ + E+  
Sbjct: 58  GEIYFDDVLVNDIPPKYREVG---MVFQNYALYPHMTV--FENIAFPLRARRISKDEV-- 110
Query: 196 IEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
                    ++ R  +  + L+R   +  SGG+++R  + +  V    + + DE  S LD
Sbjct: 111 ----EKRVVEIARKLLIDNLLDRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 256 VDALRDVAKA 265
            + LR + +A
Sbjct: 166 AN-LRMIMRA 174

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 96  KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155
           K +NL ++EGE    +G +G GKSTL +++ G     +T G +    + + +  P ER +
Sbjct: 20  KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSMKT 213
             +F S+     +    N+ F      A++  + Q   ++  +   A+L           
Sbjct: 78  GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL----------- 126
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
             L+R   +  SGG+R+R  I +  V    + +LDE  S LD  ALR
Sbjct: 127 --LDRK-PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALR 169

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 96  KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155
           K +NL ++EGE    +G +G GKSTL +++ G     +T G +    + + +  P ER +
Sbjct: 20  KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSMKT 213
             +F S+     +    N+ F      A++  + Q   ++  +   A+L           
Sbjct: 78  GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL----------- 126
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
             L+R   +  SGG+R+R  I +  V    + +LDE  S LD  ALR
Sbjct: 127 --LDRK-PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALR 169

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           LKG+N+ +  GEV AI+G NG GKSTL +   G    + + G ++F      + +P + S
Sbjct: 24  LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSSGRILF------DNKPIDYS 75
Query: 155 LAGLF-------MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207
             G+        + FQ P       ++ +  +++ A   KL + EI      A     +E
Sbjct: 76  RKGIMKLRESIGIVFQDPDNQLFSASV-YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134
Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN 267
            L  K            S G++KR  I  + V+   + ILDE  +GLD   + ++ K + 
Sbjct: 135 HLKDKP-------THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187
Query: 268 GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
            +       ++I  +   +  +    + +M++GR+I  G+
Sbjct: 188 EMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 96  KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL 155
           K +NL ++EGE    +G +G GKSTL +++ G     +T G +    + + +  P ER +
Sbjct: 20  KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYLYPKLERLSMKT 213
             +F S+     +    N+ F      A++  + Q   ++  +   A+L           
Sbjct: 78  GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL----------- 126
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
             L+R   +  SGG+R+R  I +  V    + +LD+  S LD  ALR
Sbjct: 127 --LDRK-PKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALR 169

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 15/233 (6%)
Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           ++L+G+   +  G+V A++G NGSGKST++ +L     Y+ T G V+  GE L++ +   
Sbjct: 33  QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 153 RSLAGLFMSFQSPVEIPGVNNIDFL-HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
                L     +  + P +    F  ++AY   R    + EI  +   +  +  +     
Sbjct: 91  -----LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME-EITAVAMESGAHDFISGFPQ 144
Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV-DALRDVAKAVNGLL 270
             D          SGG+R+   + +  +    L ILD+  S LD  + LR          
Sbjct: 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPE 204
Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG-YKAI 322
               ++L+ITH   L E  +   I  +++G + + G  +   ++E GG Y+++
Sbjct: 205 WASRTVLLITHQLSLAE--RAHHILFLKEGSVCEQG--THLQLMERGGCYRSM 253

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 105 GEVHAIMGKNGSGKSTLSKVLVGH-----------PDYEVTEGSVVFKGENLLEMEPEER 153
           G+V  ++G NG GKST  K+L G            P+++  E    F+G  L     +  
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQ--EIIKYFRGSEL-----QNY 155
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ-----PEIGPIEFYAYLYPKLER 208
               L    ++ ++   V+NI     A     +K+G+      E  P +   Y+     +
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYI-----K 207
Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
           +    + L R++ E  SGGE +R  I    V  AD+ + DE  S LDV    + A+ +  
Sbjct: 208 ILQLENVLKRDI-EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 269 LLTPKNSLLMITHYRRLLEFI 289
           LL P   ++ + H   +L+++
Sbjct: 267 LLAPTKYVICVEHDLSVLDYL 287

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
           + +GEV  I+G NG GK+T  K L G    E TEG + +      + +  +    G    
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVE--EPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
             S ++   +N+        N  + +L +P +G I+ Y                 +R VN
Sbjct: 367 LLSKIDASKLNS--------NFYKTELLKP-LGIIDLY-----------------DREVN 400
Query: 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMIT 280
           E  SGGE +R  I    +  AD+ +LDE  + LDV+    V++A+  L    + + L++ 
Sbjct: 401 E-LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVE 459
Query: 281 H 281
           H
Sbjct: 460 H 460

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 32/214 (14%)
Query: 80  VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV 139
           V  ++ V  + K   L  VN+ +  GE   I+G +G+GK+T  +++ G    +V     +
Sbjct: 6   VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG---LDVPSTGEL 62
Query: 140 FKGENL------LEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
           +  + L      L + PE+R +    M FQ+    P  N   F ++A+     K+ + EI
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIG---MVFQTWALYP--NLTAFENIAFPLTNMKMSKEEI 117
Query: 194 GPIEFYAYLYPKLERLSMKTDF---LNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250
                      ++E ++   D    LN    E  SGG+++R  + +  V    L +LDE 
Sbjct: 118 ---------RKRVEEVAKILDIHHVLNHFPRE-LSGGQQQRVALARALVKDPSLLLLDEP 167
Query: 251 DSGLDV---DALRDVAKAVNGLLTPKNSLLMITH 281
            S LD    D+ R + K V   L    +LL+++H
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGV--TLLVVSH 199

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 22/224 (9%)
Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           +  ++IL+ ++       + A  G +G GKST+  +L     Y+ T G +   G+ +  +
Sbjct: 12  DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 149 EPEE-RSLAGLFMSFQSPVEIPGV-NNIDF-LHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
             E  RS  G F+S  S +    +  N+ + L   Y          ++  +   A+    
Sbjct: 70  SLENWRSQIG-FVSQDSAIMAGTIRENLTYGLEGDYT-------DEDLWQVLDLAFARSF 121
Query: 206 LERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
           +E +    D LN  V E     SGG+R+R  I +  +    + +LDE  + LD ++   V
Sbjct: 122 VENMP---DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            KA++ L+  + +L+ I H  RL   +    I+ +E G+I  +G
Sbjct: 179 QKALDSLMKGRTTLV-IAH--RLSTIVDADKIYFIEKGQITGSG 219

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 49/260 (18%)
Query: 71  DEKSQPLLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LV 126
           D+  + +++++ +T V  +  + I  L  V+L V  G+++ ++G +G+GKSTL +   L+
Sbjct: 18  DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 127 GHPDYEVTEGSVVFKGENLLEMEPEERSLA--GLFMSFQSPVEIPGVNNIDFLHMAYNAR 184
             P    TEGSV+  G+ L  +   E + A   + M FQ              H    + 
Sbjct: 78  ERP----TEGSVLVDGQELTTLSESELTKARRQIGMIFQ--------------HFNLLSS 119
Query: 185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFL--------NRNVNEGFSGGERKRNEILQ 236
           R   G   + P+E      PK E     T+ L        + +     SGG+++R  I +
Sbjct: 120 RTVFGNVAL-PLELDN--TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 176
Query: 237 LAVLGADLAILDEIDSGLD-------VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI 289
                  + + D+  S LD       ++ L+D+ + + GL     ++L+ITH   +++ I
Sbjct: 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GL-----TILLITHEMDVVKRI 230
Query: 290 KPTFIHIMEDGRIIKTGDAS 309
               + ++ +G +I+    S
Sbjct: 231 CDC-VAVISNGELIEQDTVS 249

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
            +Q ++  V+L +  GE+ AI+G NG+GKSTL ++L G+     + G     G+NL   +
Sbjct: 22  QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--LSPSHGECHLLGQNLNSWQ 79
Query: 150 PEERSLAGLFMSFQSPVEIP-GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
           P+  +     M   S +  P  V+ +  +  A          P  G  +  A     L++
Sbjct: 80  PKALARTRAVMRQYSELAFPFSVSEVIQMGRA----------PYGGSQDRQA-----LQQ 124
Query: 209 LSMKTDF--LNRNVNEGFSGGERKRNEILQLAVLGADLA---------ILDEIDSGLDV 256
           +  +TD   L +      SGGE++R   +QLA + A L           LDE  S LD+
Sbjct: 125 VMAQTDCLALAQRDYRVLSGGEQQR---VQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           I +  +L +  G V A++G +GSGKST+  +L+    Y+   G++   G ++ ++ P   
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL--YDPASGTISLDGHDIRQLNPVWL 416
Query: 153 RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           RS  G     Q P+        NI     AY A           P    A    ++  ++
Sbjct: 417 RSKIGTVS--QEPILFSCSIAENI-----AYGAD---------DPSSVTAEEIQRVAEVA 460
Query: 211 MKTDFLNRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
               F+ RN  +GF           SGG+++R  I +  +    + +LDE  S LD +  
Sbjct: 461 NAVAFI-RNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENE 519
Query: 260 RDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             V +A++ L+  + ++L+I H  RL        + +++ G+I + G
Sbjct: 520 YLVQEALDRLMDGR-TVLVIAH--RLSTIKNANMVAVLDQGKITEYG 563

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 32/234 (13%)
Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           + V   T   A S    L G+   + EG + A++G+ G GKS+L   L+   D    EG 
Sbjct: 4   ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGH 61
Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE 197
           V  KG   +   P++  +    +            NI F          +L +P    + 
Sbjct: 62  VAIKGS--VAYVPQQAWIQNDSLR----------ENILF--------GCQLEEPYYRSVI 101
Query: 198 FYAYLYPKLERLSM--KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
               L P LE L    +T+   + VN   SGG+++R  + +     AD+ + D+  S +D
Sbjct: 102 QACALLPDLEILPSGDRTEIGEKGVN--LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Query: 256 VDALRDVAKAV---NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
               + + + V    G+L  K  +L +TH    L  +    I +M  G+I + G
Sbjct: 160 AHVGKHIFENVIGPKGMLKNKTRIL-VTHSMSYLPQVD--VIIVMSGGKISEMG 210

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
           +LK +NL + +GE+ AI G  GSGK++L  +++G  + E +EG +   G           
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGR---------- 100
Query: 154 SLAGLFMSFQSPVE--IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
                 +SF S     +PG    + + ++Y+  R K        +     L   + + + 
Sbjct: 101 ------VSFCSQFSWIMPGTIKENIIGVSYDEYRYK-------SVVKACQLQQDITKFAE 147
Query: 212 KTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA-VN 267
           +    N  + EG    SGG+R R  + +     ADL +LD     LDV     V ++ V 
Sbjct: 148 QD---NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 204
Query: 268 GLLTPKNSLLMITHYRRLLEFIKPTFIH 295
            L+  K  +L+ +    L +  K   +H
Sbjct: 205 KLMANKTRILVTSKMEHLRKADKILILH 232

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 14/216 (6%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER 153
           +L+G+   +  GEV A++G NGSGKST++ +L     Y+ T G ++  G+ L +   E R
Sbjct: 32  VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL--YQPTGGQLLLDGKPLPQY--EHR 87
Query: 154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT 213
            L     +     ++ G +  +  ++AY   ++   + EI      +  +  +  L    
Sbjct: 88  YLHRQVAAVGQEPQVFGRSLQE--NIAYGLTQKPTME-EITAAAVKSGAHSFISGLPQGY 144
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK 273
           D          SGG+R+   + +  +    + ILD+  S LD ++   V + +    +P+
Sbjct: 145 DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL--YESPE 202
Query: 274 ---NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
               S+L+IT +  L+E  +   I  +E G I + G
Sbjct: 203 RYSRSVLLITQHLSLVE--QADHILFLEGGAIREGG 236

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 49/254 (19%)
Query: 77  LLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LVGHPDYE 132
           +++++ +T V  +  + I  L  V+L V  G+++ ++G +G+GKSTL +   L+  P   
Sbjct: 1   MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--- 57
Query: 133 VTEGSVVFKGENLLEMEPEERSLA--GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ 190
            TEGSV+  G+ L  +   E + A   + M FQ              H    + R   G 
Sbjct: 58  -TEGSVLVDGQELTTLSESELTKARRQIGMIFQ--------------HFNLLSSRTVFGN 102
Query: 191 PEIGPIEFYAYLYPKLERLSMKTDFL--------NRNVNEGFSGGERKRNEILQLAVLGA 242
             + P+E      PK E     T+ L        + +     SGG+++R  I +      
Sbjct: 103 VAL-PLELDN--TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159
Query: 243 DLAILDEIDSGLD-------VDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH 295
            + + DE  S LD       ++ L+D+ + + GL     ++L+ITH   +++ I    + 
Sbjct: 160 KVLLCDEATSALDPATTRSILELLKDINRRL-GL-----TILLITHEMDVVKRICDC-VA 212
Query: 296 IMEDGRIIKTGDAS 309
           ++ +G +I+    S
Sbjct: 213 VISNGELIEQDTVS 226

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 38/228 (16%)
Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           I +  +L +  G V A++G +GSGKST+  +L+    Y+   G++   G ++ ++ P   
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL--YDPASGTISLDGHDIRQLNPVWL 447
Query: 153 RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           RS  G     Q P+        NI     AY A           P    A    ++  ++
Sbjct: 448 RSKIGTVS--QEPILFSCSIAENI-----AYGAD---------DPSSVTAEEIQRVAEVA 491
Query: 211 MKTDFLNRNVNEGF-----------SGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL 259
               F+ RN  +GF           SGG+++R  I +  +    + +LDE  S LD +  
Sbjct: 492 NAVAFI-RNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENE 550
Query: 260 RDVAKAVNGLLTPKNSLLMITHYRRLLEFIK-PTFIHIMEDGRIIKTG 306
             V +A++ L+  + ++L+I H+   L  IK    + +++ G+I + G
Sbjct: 551 YLVQEALDRLMDGR-TVLVIAHH---LSTIKNANMVAVLDQGKITEYG 594

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 71  DEKSQPLLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKV--LV 126
           D+  +  ++++ +T V  +  + I  L  V+L V  G+++ ++G +G+GKSTL +   L+
Sbjct: 18  DDDDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 127 GHPDYEVTEGSVVFKGENLL-----EMEPEERSLAGLFMSF 162
             P    TEGSV+  G+ L      E+    R +  +F  F
Sbjct: 78  ERP----TEGSVLVDGQELTTLSESELTKARRQIGXIFQHF 114

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 34/226 (15%)
Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           +KG++L V  G++  ++G NG+GK+T    + G       +G ++F G+++        +
Sbjct: 22  IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIFNGQDITNKPAHVIN 79
Query: 155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKL-ERLSMKT 213
             G+ +  +     P +   + L      R+ K G      +E+   L+P+L ERL    
Sbjct: 80  RXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKR--DLEWIFSLFPRLKERL---- 133
Query: 214 DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD---VDALRDVAKAVNG-- 268
               + +    SGGE++   I +       L   DE   GL    V  + +V + +N   
Sbjct: 134 ----KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 269 ---LLTPKNSL--LMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
              LL  +N+L  L + HY            +++E G+I+  G AS
Sbjct: 190 TTILLVEQNALGALKVAHYG-----------YVLETGQIVLEGKAS 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	1e-152
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	1e-143
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-23
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-21
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	4e-21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-18
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-20
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-18
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-16
1ji0_A	240	ABC transporter; ATP binding protein, structural g	4e-14
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	5e-14
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	2e-13
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-13
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	6e-13
1g6h_A	257	High-affinity branched-chain amino acid transport	1e-12
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	5e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-05
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	8e-11
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-09
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-09
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-09
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-08
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-08
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	6e-08
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	8e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-07
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-07
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	4e-07
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	5e-07
2ghi_A	260	Transport protein; multidrug resistance protein, M	8e-07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	9e-07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-05
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-06
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	5e-06
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	6e-06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-05
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	2e-05
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	2e-05
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	2e-05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	4e-05
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	9e-05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	2e-04
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	3e-04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	5e-04

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score =  426 bits (1097), Expect = e-152
 Identities = 129/262 (49%), Positives = 175/262 (66%), Gaps = 2/262 (0%)

Query: 61  SPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKST 120
           S     S G   +   +L +  L   + +  + IL+G++L V+ GEVHAIMG NGSGKST
Sbjct: 4   SHHHHHSSGLVPRGSHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKST 61

Query: 121 LSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA 180
           LS  L G  DYEVT G+V FKG++LL + PE+R+  G+FM+FQ PVEIPGV+N  FL  A
Sbjct: 62  LSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA 121

Query: 181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL 240
            NA R   GQ  +   +F   +  K+  L M  D L R+VN GFSGGE+KRN+ILQ+AVL
Sbjct: 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL 181

Query: 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG 300
             +L ILDE DSGLD+DAL+ VA  VN L   K S +++THY+R+L++IKP ++H++  G
Sbjct: 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 241

Query: 301 RIIKTGDASIATVLEEGGYKAI 322
           RI+K+GD ++   LEE GY  +
Sbjct: 242 RIVKSGDFTLVKQLEEQGYGWL 263

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score =  403 bits (1039), Expect = e-143
 Identities = 121/246 (49%), Positives = 166/246 (67%), Gaps = 6/246 (2%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
            L++  L A I    + ILKGVNL+V +GEVHA+MG NG+GKSTL K+L G P+Y V  G
Sbjct: 3   QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60

Query: 137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
            ++  GEN+LE+ P+ER+  GLF++FQ PVE+PGV   +FL +A  A+       E+G  
Sbjct: 61  EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL----GREVGVA 116

Query: 197 EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
           EF+  +   LE L     +L+R +NEGFSGGE+KRNEILQL VL    A+LDE DSGLD+
Sbjct: 117 EFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176

Query: 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE 316
           DAL+ VA+ VN +  P    L+ITHY+R+L +I+P  +H+M DGR++ TG   +A  LE 
Sbjct: 177 DALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEA 236

Query: 317 GGYKAI 322
            GY+ +
Sbjct: 237 KGYEWL 242

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 98.9 bits (247), Expect = 4e-23
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 22/221 (9%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDY--EVTEGSVVFKGENL 145
                +     +V +G V  I+G NG+GK+T  K+L G   P+   +      V +    
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161

Query: 146 LEMEPEERSLAG--LFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYL 202
            E++     L    +    +   V++        +              E+         
Sbjct: 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV--------- 212

Query: 203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV 262
              ++ L ++ + L+R +++  SGGE +R  I    +  A     DE  S LD+     V
Sbjct: 213 ---VKELELE-NVLDRELHQ-LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKV 267

Query: 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303
           A+ +  L     ++L++ H   +L+++    IH++     +
Sbjct: 268 ARVIRRLANEGKAVLVVEHDLAVLDYLS-DVIHVVYGEPGV 307

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 93.1 bits (232), Expect = 3e-21
 Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
               L+     + +GEV  I+G NG GK+T  K+L G    E TEG V +        +P
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV--EEPTEGKVEWDLTVA--YKP 423

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           +          ++  V        + L         K+   ++    +   L   L+ L 
Sbjct: 424 QYIKA-----EYEGTVY-------ELLS--------KIDSSKLNSNFYKTEL---LKPLG 460

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +  D  +RNV +  SGGE +R  I    +  AD+ +LDE  + LDV+    V++A+  L+
Sbjct: 461 II-DLYDRNVED-LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518

Query: 271 -TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317
              + + L++ H   +++++    + + E G   + G A     + EG
Sbjct: 519 EKNEKTALVVEHDVLMIDYVS-DRLIVFE-GEPGRHGRALPPMGMREG 564

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 90.3 bits (225), Expect = 4e-21
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 49/275 (17%)

Query: 61  SPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKST 120
                SS      S  L+Q+  +     +  + ILK ++  + +G+   + G NG+GK+T
Sbjct: 5   HHHHHSSGLVPRGSHMLIQLDQIG--RMKQGKTILKKISWQIAKGDKWILYGLNGAGKTT 62

Query: 121 LSKVLVGHPDYEVTEGSVVFKGENL---LEMEPEERSLAGL---FMSFQSPVEIPGVNNI 174
           L  +L        T G+V   G+            R   G     +  +       ++ +
Sbjct: 63  LLNILNA--YEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVV 120

Query: 175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPK--------LERLSMKTDFLNRNVNEGFSG 226
             +  A+              I  Y  +  +        L+ + M +    + +    S 
Sbjct: 121 --ISGAF------------KSIGVYQDIDDEIRNEAHQLLKLVGM-SAKAQQYIGY-LST 164

Query: 227 GERKRNEILQLA---VLGADLAILDEIDSGLDVDALRDVAKAVNGL--LTPKNSLLMITH 281
           GE++R   + +A   +    + ILDE  +GLD  A   +   ++ L    P  +++ +TH
Sbjct: 165 GEKQR---VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221

Query: 282 YRRLLEFIKPTFIHI--MEDGRIIKTGDASIATVL 314
           +   +E I   F  I  ++DG+ I+ G  ++  +L
Sbjct: 222 F---IEEITANFSKILLLKDGQSIQQG--AVEDIL 251

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 41/231 (17%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
              +L       ++ E+  +MG+NG+GK+TL K+L G    +  EG  + K    + M+P
Sbjct: 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA--LKPDEGQDIPKLN--VSMKP 419

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           ++     +   F       G     F             Q ++            ++ L 
Sbjct: 420 QK-----IAPKFP------GTVRQLFFKKIRGQFLNPQFQTDV------------VKPLR 456

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLA---VLGADLAILDEIDSGLDVDALRDVAKAVN 267
           +  D +++ V    SGGE +R   + +     + AD+ ++DE  + LD +     +K + 
Sbjct: 457 I-DDIIDQEVQH-LSGGELQR---VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511

Query: 268 GL-LTPKNSLLMITHYRRLLEFIKP--TFIHIMEDGRIIKTGDASIATVLE 315
              L  K +  ++ H              + + E          +  ++L 
Sbjct: 512 RFILHNKKTAFIVEHD---FIMATYLADKVIVFEGIPSKNAHARAPESLLT 559

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 52/256 (20%), Positives = 94/256 (36%), Gaps = 31/256 (12%)

Query: 78  LQVTGLTAVIAE------SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HP 129
           +Q+  L   +        S              G+V  ++G NG GKST  K+L G   P
Sbjct: 70  IQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129

Query: 130 DY-------EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAY- 181
           +        E  E    F+G  L     +      +    +          +D +  A  
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE-DDIKAIIKPQY-------VDNIPRAIK 181

Query: 182 NARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG 241
              ++     ++   +    +   ++ L ++ + L R++ +  SGGE +R  I    V  
Sbjct: 182 GPVQKVGELLKLRMEKSPEDVKRYIKILQLE-NVLKRDIEK-LSGGELQRFAIGMSCVQE 239

Query: 242 ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT--FIHIMED 299
           AD+ + DE  S LDV    + A+ +  LL P   ++ + H    L  +     F+ I+  
Sbjct: 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH-D--LSVLDYLSDFVCIIYG 296

Query: 300 GRIIKTGDASIATVLE 315
              +       A+V E
Sbjct: 297 VPSVYGVVTLPASVRE 312

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 92.0 bits (229), Expect = 7e-21
 Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 30/228 (13%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
               L   N    EGE+  I+G NG GK+T +++LVG       EGSV  + + L   +P
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE--ITADEGSVTPEKQIL-SYKP 336

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           +          F +           +L                    F+  +    +RL+
Sbjct: 337 Q--------RIFPNY----DGTVQQYLE-------NASKDALSTSSWFFEEV---TKRLN 374

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +    L  NVN+  SGGE ++  I       ADL +LD+  S LDV+    VAKA+  + 
Sbjct: 375 L-HRLLESNVND-LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT 432

Query: 271 TPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEG 317
             +     +I H   + ++I    I + + G   K G A+    L+ G
Sbjct: 433 RERKAVTFIIDHDLSIHDYIA-DRIIVFK-GEPEKAGLATSPVTLKTG 478

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 16/214 (7%)

Query: 95  LKGVNL-LVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYEVTEGSVVFKGENLLEMEPE 151
            K   L       +  ++GKNG GK+T+ K+L G   P++       V K E L     +
Sbjct: 14  FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK-VGKDEVLKRFRGK 72

Query: 152 ERS--LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
           E       L+ +    V       +++          ++    +  I+         E L
Sbjct: 73  EIYNYFKELYSNELKIVHKIQ--YVEYASKFLKGTVNEI----LTKIDERGKKDEVKELL 126

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
           +M  +  N++ N   SGG  +R  +    +  AD+ I D+  S LDV    ++AKA+  L
Sbjct: 127 NMT-NLWNKDANI-LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184

Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII 303
           L  K  ++++ H   +L+++    IHI+     +
Sbjct: 185 LKNK-YVIVVDHDLIVLDYLT-DLIHIIYGESSV 216

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 89.7 bits (223), Expect = 4e-20
 Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 35/257 (13%)

Query: 62  PLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTL 121
               + +  + + + L+    L           L+     + +GEV  I+G NG GK+T 
Sbjct: 272 KFTKTGERVEIERETLVTYPRLVKDY---GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTF 328

Query: 122 SKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAY 181
            K+L G    E TEG + +        +P+          ++  V        + L    
Sbjct: 329 VKMLAGV--EEPTEGKIEWDLTVA--YKPQYIKA-----DYEGTVY-------ELLS--- 369

Query: 182 NARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG 241
                K+   ++    +   L   L+ L +  D  +R VNE  SGGE +R  I    +  
Sbjct: 370 -----KIDASKLNSNFYKTEL---LKPLGI-IDLYDREVNE-LSGGELQRVAIAATLLRD 419

Query: 242 ADLAILDEIDSGLDVDALRDVAKAVNGL-LTPKNSLLMITHYRRLLEFIKPTFIHIMEDG 300
           AD+ +LDE  + LDV+    V++A+  L    + + L++ H   +++++    +    +G
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF--EG 477

Query: 301 RIIKTGDASIATVLEEG 317
              K G A     + EG
Sbjct: 478 EPGKYGRALPPMGMREG 494

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 33/205 (16%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG----HPDYEVTEGSVVFKGENL 145
                +     +V EG V  I+G NG+GKST  K+L G    +   +      V +    
Sbjct: 32  GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG 91

Query: 146 LEMEPEERSLAG--LFMSFQSP-------VEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
            E++     L    +    +              V  +             +   E+  +
Sbjct: 92  NELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENV 151

Query: 197 EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
                              L R +    SGGE +R  I    +  A     DE  S LD+
Sbjct: 152 -------------------LEREIQH-LSGGELQRVAIAAALLRNATFYFFDEPSSYLDI 191

Query: 257 DALRDVAKAVNGLLTPKNSLLMITH 281
               + A+A+  L     S+L++ H
Sbjct: 192 RQRLNAARAIRRLSEEGKSVLVVEH 216

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 79.1 bits (196), Expect = 4e-17
 Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 48/253 (18%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDY 131
              +L+V  L    ++     LKG+N+ +  GEV AI+G NG GKSTL +   G   P  
Sbjct: 4   EDYILKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-- 60

Query: 132 EVTEGSVVFKGENLLEME---PEERSLAGLFMSFQSP--------VE--IPGVNNIDFLH 178
             + G ++F  + +        + R   G  + FQ P        V   +          
Sbjct: 61  --SSGRILFDNKPIDYSRKGIMKLRESIG--IVFQDPDNQLFSASVYQDV---------- 106

Query: 179 MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
            ++ A   KL + EI      A     L+R  +     ++  +   S G++KR  I  + 
Sbjct: 107 -SFGAVNMKLPEDEIRKRVDNA-----LKRTGI-EHLKDKPTHC-LSFGQKKRVAIAGVL 158

Query: 239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTF---I 294
           V+   + ILDE  +GLD   + ++ K +  +      ++++ TH    ++ + P +   +
Sbjct: 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD---IDIV-PLYCDNV 214

Query: 295 HIMEDGRIIKTGD 307
            +M++GR+I  G+
Sbjct: 215 FVMKEGRVILQGN 227

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 76.1 bits (188), Expect = 4e-16
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 56/239 (23%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLL 146
             +++ L+ V+L++NEGE   + G  GSGKSTL +++ G   P    T G V++ GE   
Sbjct: 17  PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP----TSGDVLYDGER-- 70

Query: 147 EMEPEERSLAGLFMSFQSP--------VE--IPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
           +   E R   G  ++FQ P        V   +           A+  +     +  +  +
Sbjct: 71  KKGYEIRRNIG--IAFQYPEDQFFAERVFDEV-----------AFAVKNFYPDRDPVPLV 117

Query: 197 EFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERKRNEILQLAVLGADLA------ILDE 249
           +        +E + +    F +R      SGGE++R     +A+    +       ILDE
Sbjct: 118 KKA------MEFVGLDFDSFKDRVPFF-LSGGEKRR-----VAIASV-IVHEPDILILDE 164

Query: 250 IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT--FIHIMEDGRIIKTG 306
              GLD +   D+ + V    T   ++++I+H    +E +      + ++E G+ +  G
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHD---IETVINHVDRVVVLEKGKKVFDG 220

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 69.8 bits (172), Expect = 4e-14
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           S  +L+V  L           +KG++L V  G++  ++G NG+GK+T    + G      
Sbjct: 3   SDIVLEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV--RA 58

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFM 160
            +G ++F G+++        +  G+ +
Sbjct: 59  QKGKIIFNGQDITNKPAHVINRMGIAL 85

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 69.9 bits (172), Expect = 5e-14
 Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEV 133
             + V  L   I   K+EILKG++  + EGE+  ++G NG+GK+T  +++     P    
Sbjct: 14  GAVVVKDLRKRI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---- 67

Query: 134 TEGSVVFKGENLLEMEPEE-RSLAGLFMSFQSPV--EIPGVNNIDFLHMAYNARRRKLGQ 190
           + G V   G+N++E EP E R L   ++  ++     + G+  + F+   Y +   ++ +
Sbjct: 68  SSGIVTVFGKNVVE-EPHEVRKLIS-YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE 125

Query: 191 --PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA-DLAIL 247
                             E   +  + +   V   +S G  ++  I + A++    LAIL
Sbjct: 126 MVERA------------TEIAGL-GEKIKDRV-STYSKGMVRKLLIAR-ALMVNPRLAIL 170

Query: 248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           DE  SGLDV   R+V K +        ++L+ +H    +EF+    I ++ +G I++TG
Sbjct: 171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL-CDRIALIHNGTIVETG 228

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 42/227 (18%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
             ++  L+ +NL V  GE   I+G NGSGK+TL + + G        G++   G  + ++
Sbjct: 15  GYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG---LLPYSGNIFINGMEVRKI 70

Query: 149 EPEERSLAGLFMSFQS-PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207
               R         ++  + +   + +           + L +     +         L+
Sbjct: 71  RNYIR---YSTNLPEAYEIGVTVNDIV-----YLYEELKGLDRDLFLEM---------LK 113

Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA-----DLAILDEIDSGLDV---DAL 259
            L +  + L R + +  S G+        +    A     ++  LDE    +D      +
Sbjct: 114 ALKLGEEILRRKLYK-LSAGQSVL-----VRTSLALASQPEIVGLDEPFENVDAARRHVI 167

Query: 260 RDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
               K            +++TH   +L   K    + +   R+    
Sbjct: 168 SRYIKEYG--KE----GILVTHELDMLNLYKEYKAYFLVGNRLQGPI 208

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 40/244 (16%), Positives = 88/244 (36%), Gaps = 47/244 (19%)

Query: 70  QDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG-- 127
                   L++  L+       + +L+ + + + +G V    G NG GK+TL K +    
Sbjct: 3   HHHHHGSKLEIRDLSVGY---DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59

Query: 128 HPDYEVTEGSVVFKGENLLEME------PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAY 181
            P     +G +++ G  + +++      PEE  +         P +I   + +  +   Y
Sbjct: 60  KP----LKGEIIYNGVPITKVKGKIFFLPEEIIV---------PRKISVEDYLKAVASLY 106

Query: 182 NARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLG 241
             +  K    +             LE + +    L + + E  S G  +R ++    +L 
Sbjct: 107 GVKVNKNEIMDA------------LESVEVLD--LKKKLGE-LSQGTIRRVQLAS-TLLV 150

Query: 242 -ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMED 299
            A++ +LD+    +D D+   V K++  +L  K   ++         +         +  
Sbjct: 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD-----VNENLHK 205

Query: 300 GRII 303
               
Sbjct: 206 YSTK 209

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 66.4 bits (163), Expect = 6e-13
 Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 78/224 (34%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG-HPDYEVT 134
            ++Q+  +      ++   L  ++  V  GE+  ++G NG+GKSTL   + G        
Sbjct: 3   IVMQLQDV------AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----G 52

Query: 135 EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK-LGQPEI 193
           +GS+ F G+ L      +                              A  R  L Q + 
Sbjct: 53  KGSIQFAGQPLEAWSATKL-----------------------------ALHRAYLSQQQT 83

Query: 194 GPIEFYAY------LYPK---------LERLSMKTDFLNRNVNEGFSGGERKRNEILQLA 238
            P     +       + K            L++  D L R+ N+  SGGE +R   ++LA
Sbjct: 84  PPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRSTNQ-LSGGEWQR---VRLA 138

Query: 239 -VL---------GADLAILDEIDSGLDV-------DALRDVAKA 265
            V+            L +LDE  + LDV         L  +++ 
Sbjct: 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 18/98 (18%)

Query: 73  KSQPLLQVT-------GLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL 125
            +  +L+            A+          GV++ VN+G+V  I+G NGSGKSTL  V+
Sbjct: 3   DTMEILRTENIVKYFGEFKAL---------DGVSISVNKGDVTLIIGPNGSGKSTLINVI 53

Query: 126 VGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQ 163
            G    +  EG V F+ +++   EP E    G+  +FQ
Sbjct: 54  TGF--LKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 89

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 63.7 bits (156), Expect = 5e-12
 Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 53/223 (23%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE 135
             L V  L     +++  + + +N  +N+G++ A++G+NG GKSTL  +L+G        
Sbjct: 3   KALSVENLG-FYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG-------- 53

Query: 136 GSVVFKGENLLEMEPEERSLAGLFMSF--QSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
                    +      +  +    + F  Q        + +D + M  +       +P  
Sbjct: 54  ---------IHRPIQGKIEVYQS-IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP-- 101

Query: 194 GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL-------GADLAI 246
              + Y      L+ L++ T    R      SGG+R+        +L          L +
Sbjct: 102 KSHD-YQVAMQALDYLNL-THLAKREFTS-LSGGQRQL-------ILIARAIASECKLIL 151

Query: 247 LDEIDSGLDV-------DALRDVAKAVNGLLTPKNSLLMITHY 282
           LDE  S LD+         L D+A++   +     +++  TH 
Sbjct: 152 LDEPTSALDLANQDIVLSLLIDLAQS-QNM-----TVVFTTHQ 188

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 65.4 bits (159), Expect = 7e-12
 Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 39/215 (18%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH--PDYEVTEGSVVFKGENLLEME 149
           + +L    L +     + I G NG GKSTL + +       +   E       E+ ++  
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGT 507

Query: 150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
             + S+                  +DF+  +    +  +                KL   
Sbjct: 508 HSDTSV------------------LDFVFESGVGTKEAIKD--------------KLIEF 535

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL 269
               + +   ++   SGG + +  + +  +  AD+ +LDE  + LD      VA  VN L
Sbjct: 536 GFTDEMIAMPISA-LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN---VAWLVNYL 591

Query: 270 LTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK 304
            T   + + I+H    L+ +    I+  E  ++ K
Sbjct: 592 NTCGITSITISHDSVFLDNVCEYIIN-YEGLKLRK 625

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 41/269 (15%), Positives = 88/269 (32%), Gaps = 26/269 (9%)

Query: 42  YHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLL 101
             +H  +        +  +        G+D +      +      I E+  E +  +  +
Sbjct: 741 IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRE-----TMDRANRQINENDAEAMNKIFKI 795

Query: 102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMS 161
             EG    I G +   K   +             G    +   ++ ++        L  S
Sbjct: 796 --EGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVES 853

Query: 162 FQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN 221
               V       +D      + + R L + EI               L +  + ++ +  
Sbjct: 854 HSKMVA-----EVDMKEALASGQFRPLTRKEIEEH---------CSMLGLDPEIVSHSRI 899

Query: 222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH 281
            G SGG++ +  +         L +LDE  + LD D+L  ++KA+      +  +++ITH
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITH 956

Query: 282 YRRLLEFIKPTFIHIMEDGRIIK-TGDAS 309
                + +      + +DGR+     +  
Sbjct: 957 SAEFTKNLTEEVWAV-KDGRMTPSGHNWV 984

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 73  KSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE 132
           K + +++VT +      + +  +  +N   +     A++G NG+GKSTL  VL G  +  
Sbjct: 667 KQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG--ELL 724

Query: 133 VTEGSVVFKGENL 145
            T G V    EN 
Sbjct: 725 PTSGEVY-THENC 736

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 59.8 bits (146), Expect = 8e-11
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 10/83 (12%)

Query: 75  QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG---HPDY 131
             +L+   +  VI     EILKG++L V +GE  +I+G +GSGKSTL  +L G    P  
Sbjct: 2   AEILRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP-- 56

Query: 132 EVTEGSVVFKGENLLEMEPEERS 154
             TEG V  +G+ +     +E S
Sbjct: 57  --TEGKVFLEGKEVDYTNEKELS 77

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG---HPDYEVTEGSVVFKGENL 145
           E     LK VNL + EGE  +IMG +GSGKST+  ++ G    P    TEG V       
Sbjct: 15  EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKP----TEGEVYIDNIKT 69

Query: 146 LEMEPEERS 154
            +++ +E +
Sbjct: 70  NDLDDDELT 78

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 57/280 (20%), Positives = 102/280 (36%), Gaps = 64/280 (22%)

Query: 47  LSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQE-ILKGVNLLVNEG 105
           + +  VTA        L   +   +   +       L+          +LK +N  +  G
Sbjct: 5   VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERG 64

Query: 106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP 165
           ++ A+ G  G+GK++L  +++G  + E +EG +   G            ++  F S Q+ 
Sbjct: 65  QLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSG-----------RIS--FCS-QNS 108

Query: 166 VEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK-LERLSMKTDFLN----- 217
             +PG    NI             +G        +  Y Y   ++   ++ D        
Sbjct: 109 WIMPGTIKENI-------------IGVS------YDEYRYRSVIKACQLEEDISKFAEKD 149

Query: 218 ------RNVNEGFSGGERKRNEILQLA---VLGADLAILDEIDSGLDVDALRDV-AKAVN 267
                   +    SGG+R R   + LA      ADL +LD     LDV   +++    V 
Sbjct: 150 NIVLGEGGIT--LSGGQRAR---ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204

Query: 268 GLLTPKNSLLMITHYRRLLEFIKPT-FIHIMEDGRIIKTG 306
            L+  K  +L +T     +E +K    I I+ +G     G
Sbjct: 205 KLMANKTRIL-VTSK---MEHLKKADKILILHEGSSYFYG 240

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 24/225 (10%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLE 147
           +  ++IL+ ++       + A  G +G GKST+  +L      Y+ T G +   G+ +  
Sbjct: 12  DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL---ERFYQPTAGEITIDGQPIDN 68

Query: 148 MEPEE-RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYP 204
           +  E  RS  G     Q    + G    N+      Y          ++  +   A+   
Sbjct: 69  ISLENWRSQIGFVS--QDSAIMAGTIRENL-----TY-GLEGDYTDEDLWQVLDLAFARS 120

Query: 205 KLERLSMKTDFLNRNVNE-G--FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD 261
            +E +    D LN  V E G   SGG+R+R  I +  +    + +LDE  + LD ++   
Sbjct: 121 FVENMP---DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177

Query: 262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           V KA++ L+  + +L+ I H  RL   +    I+ +E G+I  +G
Sbjct: 178 VQKALDSLMKGRTTLV-IAH--RLSTIVDADKIYFIEKGQITGSG 219

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 61  SPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGK 118
                SS   D+  + +++++ +T V  +  + I  L  V+L V  G+++ ++G +G+GK
Sbjct: 8   HHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGK 67

Query: 119 STLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPEE----RSLAGLFMSFQ 163
           STL + +     P    TEGSV+  G+ L  +   E    R   G  M FQ
Sbjct: 68  STLIRCVNLLERP----TEGSVLVDGQELTTLSESELTKARRQIG--MIFQ 112

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 39/232 (16%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
                IL  +NL + +GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   
Sbjct: 19  PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLIDGHDLALA 76

Query: 149 EPEE-RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
           +P   R   G+ +  Q  V +    ++NI     +          P +   +        
Sbjct: 77  DPNWLRRQVGVVL--QDNVLLNRSIIDNI-----SL-------ANPGMSVEKVIY----- 117

Query: 206 LERLSMKTDFLNR-------NVNE---GFSGGERKRNEILQLAVLG-ADLAILDEIDSGL 254
             +L+   DF++         V E   G SGG+R+R  I + A++    + I DE  S L
Sbjct: 118 AAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR-ALVNNPKILIFDEATSAL 176

Query: 255 DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           D ++   + + ++ +   +   ++I H  RL        I +ME G+I++ G
Sbjct: 177 DYESEHVIMRNMHKICKGRTV-IIIAH--RLSTVKNADRIIVMEKGKIVEQG 225

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 44/235 (18%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLE 147
             +   L+ +NL +  G+  A++G++GSGKST++ ++      Y++ EG ++  G +L E
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI---TRFYDIDEGHILMDGHDLRE 409

Query: 148 MEPEE-RSLAGL-----FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIE---- 197
                 R+   L      + F   V     NNI     AY        + E    E    
Sbjct: 410 YTLASLRNQVALVSQNVHL-FNDTVA----NNI-----AY-------ARTEEYSREQIEE 452

Query: 198 --FYAYLYPKLERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVL-GADLAILDEID 251
               AY    + ++    + L+  + E     SGG+R+R  I + A+L  + + ILDE  
Sbjct: 453 AARMAYAMDFINKMD---NGLDTIIGENGVLLSGGQRQRIAIAR-ALLRDSPILILDEAT 508

Query: 252 SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           S LD ++ R +  A++ L   + S L+I H  RL    +   I ++EDG I++ G
Sbjct: 509 SALDTESERAIQAALDELQKNRTS-LVIAH--RLSTIEQADEIVVVEDGIIVERG 560

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 55/237 (23%), Positives = 92/237 (38%), Gaps = 62/237 (26%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           E    +LK +N  +  G++ A+ G  G+GK++L  +++G  + E +EG +   G      
Sbjct: 18  EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEGKIKHSG------ 69

Query: 149 EPEERSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK- 205
                 ++  F S Q    +PG    NI F            G        +  Y Y   
Sbjct: 70  -----RIS--FCS-QFSWIMPGTIKENIIF------------GVS------YDEYRYRSV 103

Query: 206 LERLSMKTDFLN-----------RNVNEGFSGGERKRNEILQLA--V-LGADLAILDEID 251
           ++   ++ D                +    SGG+R R   + LA  V   ADL +LD   
Sbjct: 104 IKACQLEEDISKFAEKDNIVLGEGGIT--LSGGQRAR---ISLARAVYKDADLYLLDSPF 158

Query: 252 SGLDVDALRDV-AKAVNGLLTPKNSLLMITHYRRLLEFIKPT-FIHIMEDGRIIKTG 306
             LDV   +++    V  L+  K  +L +T     +E +K    I I+ +G     G
Sbjct: 159 GYLDVLTEKEIFESCVCKLMANKTRIL-VTSK---MEHLKKADKILILHEGSSYFYG 211

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 32/229 (13%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLE 147
             ++  L  V+  + +G+  A++G++GSGKST++ +       Y+V  GS+   G ++ +
Sbjct: 353 GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF---TRFYDVDSGSICLDGHDVRD 409

Query: 148 MEPEE-RSLAGL-----FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY 201
            +    R    L      + F   +     NNI     AY A   +  + +I      A+
Sbjct: 410 YKLTNLRRHFALVSQNVHL-FNDTIA----NNI-----AY-AAEGEYTREQIEQAARQAH 458

Query: 202 LYPKLERLSMKTDFLNRNVNEG---FSGGERKRNEILQLAVL-GADLAILDEIDSGLDVD 257
               +E +      L+  + E     SGG+R+R  I + A+L  A + ILDE  S LD +
Sbjct: 459 AMEFIENMP---QGLDTVIGENGTSLSGGQRQRVAIAR-ALLRDAPVLILDEATSALDTE 514

Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           + R +  A++ L   K   L+I H  RL    +   I ++++G II+ G
Sbjct: 515 SERAIQAALDELQKNKTV-LVIAH--RLSTIEQADEILVVDEGEIIERG 560

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 31/112 (27%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEVTEGSVVFKGENLLEMEPE 151
            ++GV+  + EGE+  ++G +GSGK+T+ +++ G   P     +G V   G+ + ++ P+
Sbjct: 30  SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT----KGDVWIGGKRVTDLPPQ 85

Query: 152 ERSLAGLFMSFQS----PVEIPGVNNIDFLHM------AYNARRRKLGQPEI 193
           +R++    + FQ+                 HM      ++  R +++ + E+
Sbjct: 86  KRNVG---LVFQNYALFQ------------HMTVYDNVSFGLREKRVPKDEM 122

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 18/79 (22%)

Query: 74  SQPLLQVTGLTAVIAESK----QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSK---VLV 126
           S+  L V  L       K     E+LKGV+L    G+V +I+G +GSGKST  +    L 
Sbjct: 3   SENKLHVIDL------HKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56

Query: 127 GHPDYEVTEGSVVFKGENL 145
                + +EG+++  G+N+
Sbjct: 57  -----KPSEGAIIVNGQNI 70

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 49/153 (32%)

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS 154
           L  ++L V  GE   I+G  G+GK+   +++ G   +    G ++  G+++ ++ PE+  
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--HVPDSGRILLDGKDVTDLSPEKHD 73

Query: 155 LAGLFMSFQS----PVEIPGVNNIDFLHM------AYNARRRKLGQPEIGPIEFYAYLYP 204
           +A     +Q+    P            HM       +  R +K+                
Sbjct: 74  IA---FVYQNYSLFP------------HMNVKKNLEFGMRMKKI---------------K 103

Query: 205 KLER----LSM--KTDFLNRNVNEGFSGGERKR 231
             +R             L+RN     SGGE++R
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLT-LSGGEQQR 135

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 59/254 (23%), Positives = 95/254 (37%), Gaps = 72/254 (28%)

Query: 78  LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS 137
           + V   T   A S    L G+   + EG + A++G+ G GKS+L   L+   + +  EG 
Sbjct: 4   ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA--EMDKVEGH 61

Query: 138 VVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGP 195
           V  KG           S+A  ++  Q           NI F            G      
Sbjct: 62  VAIKG-----------SVA--YVP-QQAWIQNDSLRENILF------------GCQ---- 91

Query: 196 IEFYAYLYPK-LERLSMKTDFLN-----------RNVNEGFSGGERKRNEILQLA--V-L 240
                  Y   ++  ++  D              + VN   SGG+++R   + LA  V  
Sbjct: 92  --LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN--LSGGQKQR---VSLARAVYS 144

Query: 241 GADLAILDEIDSGLDVDALRDVAKAV-------NGLLTPKNSLLMITHYRRLLEFIKPT- 292
            AD+ + D+  S   VDA   V K +        G+L  K  +L +TH    + ++    
Sbjct: 145 NADIYLFDDPLSA--VDA--HVGKHIFENVIGPKGMLKNKTRIL-VTHS---MSYLPQVD 196

Query: 293 FIHIMEDGRIIKTG 306
            I +M  G+I + G
Sbjct: 197 VIIVMSGGKISEMG 210

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE- 151
           E+LKG+N+ + EGEV  ++G +GSGKST  + L      +  EG ++  G NL   +   
Sbjct: 38  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE--DFDEGEIIIDGINLKAKDTNL 95

Query: 152 --ERSLAGLFMSFQS 164
              R   G  M FQ 
Sbjct: 96  NKVREEVG--MVFQR 108

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 88  AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLL 146
            E+   +L GVN  V  G + A++G+ GSGKSTL  ++   P   +   G V     ++ 
Sbjct: 352 FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI---PRLIDPERGRVEVDELDVR 408

Query: 147 EMEPEE 152
            ++ ++
Sbjct: 409 TVKLKD 414

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 60/230 (26%), Positives = 93/230 (40%), Gaps = 34/230 (14%)

Query: 88  AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE 147
            ++    LK +N  +  G   A++G  GSGKST++K+L     Y+  EG +   G+N+ +
Sbjct: 29  KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF--YDA-EGDIKIGGKNVNK 85

Query: 148 MEPEE-RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFY----- 199
                 RS+ G+    Q  +        NI      Y       G+ +    E       
Sbjct: 86  YNRNSIRSIIGIVP--QDTILFNETIKYNI-----LY-------GKLDATDEEVIKATKS 131

Query: 200 AYLYPKLERLSMKTDFLNRNVNE-GF--SGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
           A LY  +E L       +  V   G   SGGER+R  I +  +    + I DE  S LD 
Sbjct: 132 AQLYDFIEALP---KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDS 188

Query: 257 DALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
                  KAV  L   +   ++I H  RL        I ++  G+I++ G
Sbjct: 189 KTEYLFQKAVEDLRKNRTL-IIIAH--RLSTISSAESIILLNKGKIVEKG 235

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 37/226 (16%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           ILKG+NL V  G+  A++G +G GKST  +++     Y+  +G V   G+++  +     
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL--YDPLDGMVSIDGQDIRTINVRYL 462

Query: 153 RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           R + G+    Q PV        NI            + G+ ++   E    +     + +
Sbjct: 463 REIIGVV--SQEPVLFATTIAENI------------RYGREDVTMDEIEKAV-----KEA 503

Query: 211 MKTDFLNR-------NVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALR 260
              DF+ +        V E     SGG+++R  I +  V    + +LDE  S LD ++  
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563

Query: 261 DVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
            V  A++     + + ++I H  RL        I   + G I++ G
Sbjct: 564 VVQAALDKAREGR-TTIVIAH--RLSTVRNADVIAGFDGGVIVEQG 606

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 92   QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
              +L+G++L V +G+  A++G +G GKST+ ++L     Y+   GSV   G+ + ++  +
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF--YDPMAGSVFLDGKEIKQLNVQ 1103

Query: 152  E-RSLAGL 158
              R+  G+
Sbjct: 1104 WLRAQLGI 1111

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL 145
              +E L+ V+  V  G+  A++G +G+GKST+ ++L     Y+++ G +   G+++
Sbjct: 64  ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF--YDISSGCIRIDGQDI 118

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 51/238 (21%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGENLLE 147
           +++  ILK +NL + +GE  A +G +G GKSTL  ++   P  Y+VT G ++  G N+ +
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI---PRFYDVTSGQILIDGHNIKD 407

Query: 148 MEPEE-RSLAGL-----FMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY-- 199
                 R+  GL      + F   V+     NI              G+P     E    
Sbjct: 408 FLTGSLRNQIGLVQQDNIL-FSDTVK----ENI-----LL-------GRPTATDEEVVEA 450

Query: 200 ---AYLYPKLERLSMKTDFLNRNVNE---GFSGGERKRNEILQLAVLGADLA-----ILD 248
              A  +  +  L       +  V E     SGG+++R     L++    L      ILD
Sbjct: 451 AKMANAHDFIMNLP---QGYDTEVGERGVKLSGGQKQR-----LSIARIFLNNPPILILD 502

Query: 249 EIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
           E  S LD+++   + +A++ L   + + L++ H  RL        I ++E+G I++TG
Sbjct: 503 EATSALDLESESIIQEALDVLSKDRTT-LIVAH--RLSTITHADKIVVIENGHIVETG 557

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 27/111 (24%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
             L  +NL + +GE  A++G +GSGKSTL   + G   Y+ T G + F  +++ E+ P++
Sbjct: 17  TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--YKPTSGKIYFDEKDVTELPPKD 74

Query: 153 RSLAGLFMSFQS----PVEIPGVNNIDFLHM------AYNARRRKLGQPEI 193
           R++    + FQ+    P            HM      A+    RK  + EI
Sbjct: 75  RNVG---LVFQNWALYP------------HMTVYKNIAFPLELRKAPREEI 110

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 32/118 (27%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE-----NL 145
           K   L  VN+ +  GE   I+G +G+GK+T  +++ G      + G + F          
Sbjct: 17  KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--DVPSTGELYFDDRLVASNGK 74

Query: 146 LEMEPEERSLAGLFMSFQS----PVEIPGVNNIDFLHM------AYNARRRKLGQPEI 193
           L + PE+R +    M FQ+    P            ++      A+     K+ + EI
Sbjct: 75  LIVPPEDRKIG---MVFQTWALYP------------NLTAFENIAFPLTNMKMSKEEI 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 45/310 (14%), Positives = 89/310 (28%), Gaps = 77/310 (24%)

Query: 40  SNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQV-TGLTAVIAESKQE----I 94
            N +     L  +   L  +D    S SD        +  +   L  ++     E    +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 95  LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE------GSVVFKGENLLEM 148
           L  V    N    +A             K+L+     +VT+       + +    + + +
Sbjct: 250 LLNVQ---NAKAWNAFNLS--------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 149 EPEERSLAGLF-----MSFQS-PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYL 202
            P+E     L         Q  P E+   N      ++  A   +     +   + + ++
Sbjct: 299 TPDE-VK-SLLLKYLDCRPQDLPREVLTTNP---RRLSIIAESIR---DGLATWDNWKHV 350

Query: 203 -YPKLER-LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD-------LAIL----DE 249
              KL   +    + L            RK  +  +L+V           L+++     +
Sbjct: 351 NCDKLTTIIESSLNVLE-------PAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 250 IDSGLDVDALRD---VAK-------AVNGL---LTPKNSLL------MITHYRRLLEFIK 290
            D  + V+ L     V K       ++  +   L  K          ++ HY     F  
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 291 PTFIHIMEDG 300
              I    D 
Sbjct: 462 DDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 41/252 (16%), Positives = 68/252 (26%), Gaps = 70/252 (27%)

Query: 107 VHAIMGKNGSGKSTL------SKVLVGHPDYEV---TEGSVVFKGENLLEMEPEERSLAG 157
           +    G  GSGK+ +      S  +    D+++      +     E +LEM      L  
Sbjct: 155 ID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEM------LQK 204

Query: 158 LFM----SFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK-LERLSMK 212
           L      ++ S  +    N    +H      RR L              Y   L  L   
Sbjct: 205 LLYQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKP----------YENCLLVLL-- 251

Query: 213 TDFLNRNVNEGFSGG------ERKRNEILQLAVLGADLAILDEIDSGL------------ 254
            +  N      F+         R +     L+        LD     L            
Sbjct: 252 -NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 255 ---DVDALRDVAKAVNGLLTPKNSLL--MITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
                  L       N       S++   I       +  K    H+  D ++    ++S
Sbjct: 311 LDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWK----HVNCD-KLTTIIESS 362

Query: 310 IATVLEEGGYKA 321
           +  VLE   Y+ 
Sbjct: 363 LN-VLEPAEYRK 373

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 48/318 (15%), Positives = 102/318 (32%), Gaps = 102/318 (32%)

Query: 12  SCCSFKFSNLPS---KSHVFTLPALPLLCR----RSNYHRHHLSLNRVTAALSAVDSPLK 64
                +  +LP     ++   L  +    R      +  +H ++ +++T  +       +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTII-------E 360

Query: 65  SSSDGQDEKS-QPLLQVTGL--------TAVIA-----ESKQEILKGVNLLVNEG----- 105
           SS +  +    + +     +        T +++       K +++  VN L         
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 106 ------EVHAI---MGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN------------ 144
                  + +I   +      +  L + +V H  Y + +    F  ++            
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDH--YNIPKT---FDSDDLIPPYLDQYFYS 475

Query: 145 -----LLEMEPEER--SLAGLFMSFQSPVEIPGVNNIDFL-----HMAYNARRRKLGQPE 192
                L  +E  ER      +F+ F             FL     H +            
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDF------------RFLEQKIRHDSTAWNASGSILNT 523

Query: 193 IGPIEFY-AYLY---PKLERLSMKT--DFLNRNVNEGFSGGERKRNEILQLAVLGADLAI 246
           +  ++FY  Y+    PK ERL +    DFL   + E     +     +L++A++  D AI
Sbjct: 524 LQQLKFYKPYICDNDPKYERL-VNAILDFL-PKIEENLICSKYTD--LLRIALMAEDEAI 579

Query: 247 LDEIDSGLDVDALRDVAK 264
            +E        A + V +
Sbjct: 580 FEE--------AHKQVQR 589

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
            ++L+G+   +  G+V A++G NGSGKST++ +L     Y+ T G V+  GE L++ +  
Sbjct: 32  VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL--YQPTGGKVLLDGEPLVQYDHH 89

Query: 152 E-RSLAGL 158
              +    
Sbjct: 90  YLHTQVAA 97

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 27/111 (24%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
           + + GV+  V +GE  A++G +G GK+T   +L G   Y+ T G + F    + ++ P+ 
Sbjct: 17  KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--YKPTSGEIYFDDVLVNDIPPKY 74

Query: 153 RSLAGLFMSFQS----PVEIPGVNNIDFLHM------AYNARRRKLGQPEI 193
           R +    M FQ+    P            HM      A+  R R++ + E+
Sbjct: 75  REVG---MVFQNYALYP------------HMTVFENIAFPLRARRISKDEV 110

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 60/192 (31%)

Query: 94  ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE- 152
           IL+ ++  ++ G+   ++G+ GSGKSTL    +   +   TEG +   G +   +  E+ 
Sbjct: 36  ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92

Query: 153 RSLAGLFMSFQSPVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFY--AYLYPKLER 208
           R      +  Q      G    N+D                   P   +    ++   + 
Sbjct: 93  RK--AFGVIPQKVFIFSGTFRKNLD-------------------PNAAHSDQEIWKVADE 131

Query: 209 LSMKTDF------LNRNVNEG---FSGGER----------KRNEILQLAVLGADLAILDE 249
           + +++        L+  + +G    S G +           + +IL          +LDE
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL----------LLDE 181

Query: 250 IDSGLDV--DAL 259
             + LD     +
Sbjct: 182 PSAHLDPVTYQI 193

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           + K+ +LK +   +  G+  A++G  GSGK+T+  +L+    Y+V  G ++  G ++ ++
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF--YDVDRGQILVDGIDIRKI 422

Query: 149 EPEE-RSLAG 157
           +    RS  G
Sbjct: 423 KRSSLRSSIG 432

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 37/134 (27%)

Query: 76  PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG--HPDYEV 133
             L +  L+         +L  ++L ++ GE+  I+G +G GK+TL + L G   PD   
Sbjct: 3   AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--- 57

Query: 134 TEGSVVFKGENLLEME----PEERSLAGLFMSFQS----PVEIPGVNNIDFLHM------ 179
             G +   G+ +          ER L       Q     P            H+      
Sbjct: 58  -SGEISLSGKTIFSKNTNLPVRERRLG---YLVQEGVLFP------------HLTVYRNI 101

Query: 180 AYNARRRKLGQPEI 193
           AY     K    + 
Sbjct: 102 AYGLGNGKGRTAQE 115

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEI-LQLAVL-----GADLAILDEIDSGLDVD 257
               RL +  +   R +    SGGER    +  +LA+         L ILDE    LD +
Sbjct: 230 ENKVRLFVVWEGKERPLTFL-SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEE 288

Query: 258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLE 287
             R +   +   L     +++++H   L +
Sbjct: 289 RRRKLITIMERYLKKIPQVILVSHDEELKD 318

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 27/111 (24%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
             +  +NL + +GE   ++G +G GK+T  +++ G  +   TEG + F   ++  + P++
Sbjct: 25  TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKD 82

Query: 153 RSLAGLFMSFQS----PVEIPGVNNIDFLHM------AYNARRRKLGQPEI 193
           R+++   M FQS    P            HM      A+  + +K  + EI
Sbjct: 83  RNIS---MVFQSYAVWP------------HMTVYENIAFPLKIKKFPKDEI 118

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 27/111 (24%)

Query: 93  EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE 152
            + K +NL ++EGE    +G +G GKSTL +++ G     +T G +    + + +  P E
Sbjct: 17  VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--TITSGDLFIGEKRMNDTPPAE 74

Query: 153 RSLAGLFMSFQS----PVEIPGVNNIDFLHM------AYNARRRKLGQPEI 193
           R +    M FQS    P            H+      ++  +     +  I
Sbjct: 75  RGVG---MVFQSYALYP------------HLSVAENMSFGLKLAGAKKEVI 110

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 28/158 (17%)

Query: 104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQ 163
             +   ++G  G+GKS   +++ G    +   G V   G ++  + PE R +       Q
Sbjct: 23  GRDYCVLLGPTGAGKSVFLELIAGI--VKPDRGEVRLNGADITPLPPERRGIG---FVPQ 77

Query: 164 SPVEIPGVNNIDFLHM------AYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN 217
                P        H+      AY    R + + E              E+L +    L+
Sbjct: 78  DYALFP--------HLSVYRNIAYGL--RNVERVERDRRVREM-----AEKLGI-AHLLD 121

Query: 218 RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLD 255
           R      SGGER+R  + +  V+   L +LDE  S +D
Sbjct: 122 RKPAR-LSGGERQRVALARALVIQPRLLLLDEPLSAVD 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.97
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.96
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.95
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.95
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.93
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.93
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.92
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.92
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.91
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.9
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.9
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.9
2og2_A	359	Putative signal recognition particle receptor; nuc	99.9
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.89
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.89
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.88
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.88
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.88
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.88
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.88
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.88
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.87
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.86
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.86
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.85
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.84
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.84
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.84
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.83
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.83
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.82
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.82
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.8
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.8
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.79
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.78
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.75
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.75
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.73
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.72
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.71
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.65
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.65
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.63
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.62
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.62
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.61
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.61
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.6
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.59
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.59
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.58
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.56
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.55
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.54
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.54
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.54
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.51
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.51
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.49
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.48
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.47
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.46
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.46
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.46
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.38
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.36
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.35
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.34
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.32
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.3
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.29
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.26
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.24
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.23
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.22
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.19
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.19
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.17
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.14
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.13
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.12
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.05
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.03
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.01
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.0
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.93
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.93
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.89
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.87
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.85
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.85
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.84
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.73
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.69
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.65
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.63
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.62
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.62
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.62
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.61
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.6
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.57
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.56
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.55
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.54
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.51
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.47
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.46
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.46
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.44
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.4
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.37
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.33
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.32
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.27
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.26
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.21
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.2
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.19
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.15
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.15
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.13
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.11
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.1
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.09
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.08
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.01
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.01
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.98
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.97
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.95
3ice_A	422	Transcription termination factor RHO; transcriptio	97.93
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.9
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.88
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.76
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.74
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.71
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.7
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.68
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.65
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.65
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.65
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.63
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.62
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.62
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.57
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.56
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.55
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.53
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.53
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.48
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.48
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.47
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.42
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.4
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.4
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.39
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.3
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.29
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.27
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.24
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.23
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.21
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.21
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.17
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.13
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.12
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.12
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.09
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.01
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.01
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.96
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.94
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.92
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.91
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.91
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.88
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.87
1via_A	175	Shikimate kinase; structural genomics, transferase	96.85
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.85
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.83
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.82
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.82
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.82
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.81
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.79
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.77
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.73
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.73
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.72
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.72
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.7
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.68
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.67
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.62
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.62
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.6
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.56
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.55
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.54
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.51
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.49
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.49
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.46
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.46
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.45
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.44
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.44
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.42
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.41
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.4
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.4
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.4
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.39
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.38
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.36
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.36
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.35
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.35
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.35
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.34
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.34
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.34
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.33
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.33
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.33
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.32
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.31
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.31
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.31
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.3
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.29
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.28
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.28
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.28
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.28
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.28
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.26
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.26
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.26
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.26
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.26
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.25
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.24
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.21
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.21
3bos_A	242	Putative DNA replication factor; P-loop containing	96.2
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.14
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.14
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.13
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.13
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.12
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.12
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.12
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.11
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.09
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.09
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.09
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.08
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.06
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.06
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.05
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.05
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.05
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.05
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.05
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.04
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.04
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.04
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.03
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.01
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.0
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.99
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.97
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.95
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.94
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.94
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.94
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.91
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.91
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.91
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.91
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.9
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.87
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.87
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.87
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.86
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.85
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.85
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.85
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.84
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.84
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.84
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.83
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.82
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.82
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.82
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.82
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.81
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.8
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.79
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.79
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.78
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.78
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.77
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.76
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.75
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.75
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.75
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.74
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.73
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.72
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.71
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.7
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.7
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.7
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.69
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.68
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.68
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.68
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.67
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.67
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.66
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.65
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.64
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.61
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.6
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.6
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.6
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.6
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.59
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.59
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.58
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.58
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.58
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.57
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.57
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.57
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.57
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.56
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.55
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.55
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.53
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.49
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.48
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.48
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.47
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.45
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.45
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.43
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.41
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.39
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.36
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.35
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.34
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.29
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.28
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.24
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.21
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.21
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.19
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.18
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.17
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.14
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.14
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.08
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.06
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.03
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.96
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.9
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.89
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.87
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.8
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.73
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.69
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.55
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	94.54
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.51
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.51
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	94.5
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	94.49
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.48
1wxq_A	397	GTP-binding protein; structural genomics, riken st	94.47
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.43
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.45
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.35
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	94.26
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.24
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	94.23
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.18
2qgz_A	308	Helicase loader, putative primosome component; str	94.15
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.13
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	94.1
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	94.1
3co5_A	143	Putative two-component system transcriptional RES	94.08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	93.99
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.99
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.99
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	93.92
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	93.92
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.92
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	93.86
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.85
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.83
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	93.82
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	93.8
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.76
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	93.76
3pvs_A	447	Replication-associated recombination protein A; ma	93.75

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=6.7e-56  Score=421.35  Aligned_cols=226  Identities=20%  Similarity=0.291  Sum_probs=196.0

Q ss_pred             CCCCcEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH
Q 020520           73 KSQPLLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        73 ~~~~~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~  150 (325)
                      ...++|+++||+++|+++  ...+|+||||+|++||++||+||||||||||+|+|+|+  .+|++|+|.++|+++..++.
T Consensus        20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL--~~p~~G~I~i~G~~i~~~~~   97 (366)
T 3tui_C           20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTEGSVLVDGQELTTLSE   97 (366)
T ss_dssp             ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECSSCCH
T ss_pred             CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC--CCCCceEEEECCEECCcCCH
Confidence            345799999999999642  24699999999999999999999999999999999998  78999999999999988876


Q ss_pred             HHH--hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          151 EER--SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       151 ~~~--~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                      ..+  .+..++|+||++.+++.+|+.+++.+....    .+   ....+..+++.++++.+++. +..++++.+ |||||
T Consensus        98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~----~~---~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~-LSGGq  168 (366)
T 3tui_C           98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL----DN---TPKDEVKRRVTELLSLVGLG-DKHDSYPSN-LSGGQ  168 (366)
T ss_dssp             HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH----SC---CCHHHHHHHHHHHHHHHTCG-GGTTCCTTT-SCHHH
T ss_pred             HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHcCCc-hHhcCChhh-CCHHH
Confidence            543  235699999999999999999998776432    11   23445567788999999996 577888875 99999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||+|||||+.+|++|||||||+|||+.+++.++++|++++++ |.|||+||||++++..+ ||+|++|++|++++.|+
T Consensus       169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~-aDrv~vl~~G~iv~~g~  247 (366)
T 3tui_C          169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQDT  247 (366)
T ss_dssp             HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHH-CSEEEEEETTEEEECCB
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEEcC
Confidence            99999999999999999999999999999999999999999754 89999999999999888 69999999999999998


Q ss_pred             ccH
Q 020520          308 ASI  310 (325)
Q Consensus       308 ~~~  310 (325)
                      ++.
T Consensus       248 ~~e  250 (366)
T 3tui_C          248 VSE  250 (366)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=3.6e-55  Score=402.20  Aligned_cols=245  Identities=51%  Similarity=0.852  Sum_probs=198.7

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+..++|++|+|.++|+++...+...+
T Consensus        17 ~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~   94 (267)
T 2zu0_C           17 GSHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR   94 (267)
T ss_dssp             ---CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred             CCceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            3568999999999963  67999999999999999999999999999999999973246899999999999877665554


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      .+.+++++||++.+++.+++.+++...........+.......+...++.++++.+++..+..++.+..+|||||||||+
T Consensus        95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~  174 (267)
T 2zu0_C           95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND  174 (267)
T ss_dssp             HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred             hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence            44468999999999999999998866432111001111122334445678889999995445677765349999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATV  313 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~  313 (325)
                      |||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..++||++++|++|++++.|+++....
T Consensus       175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  254 (267)
T 2zu0_C          175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ  254 (267)
T ss_dssp             HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence            99999999999999999999999999999999999976789999999999988765469999999999999999886655


Q ss_pred             HHhCCee
Q 020520          314 LEEGGYK  320 (325)
Q Consensus       314 ~~~~~~~  320 (325)
                      ++..+|.
T Consensus       255 ~~~~~~~  261 (267)
T 2zu0_C          255 LEEQGYG  261 (267)
T ss_dssp             HHTTTCT
T ss_pred             hhhcchh
Confidence            6666543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=1.7e-55  Score=397.23  Aligned_cols=225  Identities=20%  Similarity=0.256  Sum_probs=189.5

Q ss_pred             cEEEEEEEEEECCCc--ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-
Q 020520           77 LLQVTGLTAVIAESK--QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER-  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~--~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~-  153 (325)
                      +|+++||+++|+++.  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...+ 
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~   78 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--DKPTEGEVYIDNIKTNDLDDDELT   78 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEECCEEcccCCHHHHH
Confidence            589999999996422  4699999999999999999999999999999999998  78999999999999988776542 


Q ss_pred             --hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          154 --SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       154 --~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                        ++..++|+||++.+++.+|+.+++.......    ........+..+++.++++.+++.....++.+.+ ||||||||
T Consensus        79 ~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGq~QR  153 (235)
T 3tif_A           79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFK----YRGAMSGEERRKRALECLKMAELEERFANHKPNQ-LSGGQQQR  153 (235)
T ss_dssp             HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC----SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG-SCHHHHHH
T ss_pred             HHhhccEEEEecCCccCCCCcHHHHHHHHHHhh----hccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh-CCHHHHHH
Confidence              2345899999999999999999987653211    0111233445567788899999964344777764 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |+|||||+.+|++|||||||+|||+.+++.++++|++++++ |+|||+||||++.+ .+ ||+|++|++|++++.++.+.
T Consensus       154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~-~d~i~~l~~G~i~~~~~~~~  231 (235)
T 3tif_A          154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RF-GERIIYLKDGEVEREEKLRG  231 (235)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TT-SSEEEEEETTEEEEEEECC-
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-Hh-CCEEEEEECCEEEEEcChhh
Confidence            99999999999999999999999999999999999999765 89999999999965 55 79999999999999987654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=6e-55  Score=401.99  Aligned_cols=223  Identities=22%  Similarity=0.337  Sum_probs=188.3

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-HH
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-ER  153 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-~~  153 (325)
                      .++|+++||+++|++ ++.+|+||||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...... ..
T Consensus         5 ~~~l~i~~ls~~y~~-~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl--~~p~~G~I~~~G~~i~~~~~~~~~   81 (275)
T 3gfo_A            5 DYILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSSGRILFDNKPIDYSRKGIMK   81 (275)
T ss_dssp             CEEEEEEEEEEECTT-SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCCSHHHHHH
T ss_pred             CcEEEEEEEEEEECC-CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCeEEEECCEECCcccccHHH
Confidence            358999999999964 34699999999999999999999999999999999998  689999999999998522111 11


Q ss_pred             hhccEEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          154 SLAGLFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       154 ~~~~i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      .+..++|+||++. .+...|+.+++.+....    .+   ....+..+++.++++.+++. ++.++.+.+ |||||||||
T Consensus        82 ~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LSgGqkQRv  152 (275)
T 3gfo_A           82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVN----MK---LPEDEIRKRVDNALKRTGIE-HLKDKPTHC-LSFGQKKRV  152 (275)
T ss_dssp             HHHSEEEECSSGGGTCCSSBHHHHHHHHHHT----SC---CCHHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCHHHHHHH
T ss_pred             HhCcEEEEEcCcccccccCcHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhcCCccc-CCHHHHHHH
Confidence            2346899999973 34468999988765321    11   23445566788899999996 677888765 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +|||||+.+|++|||||||+|||+.+++.++++|++++ ++|+|||+||||++++..+ ||+|++|++|++++.|+++.
T Consensus       153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~-~drv~~l~~G~i~~~g~~~~  230 (275)
T 3gfo_A          153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPKE  230 (275)
T ss_dssp             HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGG-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999997 5589999999999999887 79999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.2e-54  Score=388.87  Aligned_cols=217  Identities=29%  Similarity=0.310  Sum_probs=186.7

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH--
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER--  153 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~--  153 (325)
                      ++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+....  
T Consensus         3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~   78 (224)
T 2pcj_A            3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL--DAPTEGKVFLEGKEVDYTNEKELSL   78 (224)
T ss_dssp             EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS--SCCSEEEEEETTEECCSSCHHHHHH
T ss_pred             cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCCCCHHHHHH
Confidence            47999999999964  6799999999999999999999999999999999998  68999999999999977664321  


Q ss_pred             -hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          154 -SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       154 -~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                       ++..++|+||++.+++.+++.+++.+.....    +   ....+..+++.++++.+++. +..++.+.+ |||||||||
T Consensus        79 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv  149 (224)
T 2pcj_A           79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKM----G---KPKKEAKERGEYLLSELGLG-DKLSRKPYE-LSGGEQQRV  149 (224)
T ss_dssp             HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHTTCT-TCTTCCGGG-SCHHHHHHH
T ss_pred             HHhCcEEEEecCcccCCCCCHHHHHHhHHHHc----C---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence             2245899999999999999999987653221    1   11233345678889999996 567777764 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      +|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++ .+ ||++++|++|++++.|+
T Consensus       150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~-~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-EL-THRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TT-SSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-Hh-CCEEEEEECCEEEEEee
Confidence            999999999999999999999999999999999999976689999999999987 55 79999999999999885

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.2e-54  Score=392.80  Aligned_cols=221  Identities=19%  Similarity=0.285  Sum_probs=188.8

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...+.
T Consensus         4 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~   79 (240)
T 1ji0_A            4 DIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIFNGQDITNKPAHVIN   79 (240)
T ss_dssp             SEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred             CceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCCHHHHH
Confidence            458999999999964  6799999999999999999999999999999999998  689999999999999776655444


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcC-CccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS-MKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      +..++|+||++.+++.+|+.+++.+...     ...   ...+..+.+.++++.++ +. +..++.+.+ |||||||||+
T Consensus        80 ~~~i~~v~q~~~l~~~ltv~enl~~~~~-----~~~---~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~-LSgGq~qrv~  149 (240)
T 1ji0_A           80 RMGIALVPEGRRIFPELTVYENLMMGAY-----NRK---DKEGIKRDLEWIFSLFPRLK-ERLKQLGGT-LSGGEQQMLA  149 (240)
T ss_dssp             HTTEEEECSSCCCCTTSBHHHHHHGGGT-----TCC---CSSHHHHHHHHHHHHCHHHH-TTTTSBSSS-SCHHHHHHHH
T ss_pred             hCCEEEEecCCccCCCCcHHHHHHHhhh-----cCC---CHHHHHHHHHHHHHHcccHh-hHhcCChhh-CCHHHHHHHH
Confidence            4568999999999999999999865421     011   11233455677888884 74 556777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+.+|++|||||||+|||+.+++.+++.|++++++|+|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus       150 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~i~~~g~~~~  225 (240)
T 1ji0_A          150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKV-AHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-CSEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999976789999999999988887 69999999999999987653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=2.4e-54  Score=393.16  Aligned_cols=236  Identities=51%  Similarity=0.874  Sum_probs=189.5

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+..++|++|+|.++|+++...+...+.+.
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (250)
T 2d2e_A            3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK   80 (250)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred             eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence            7999999999963  67999999999999999999999999999999999972246899999999999987766554445


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      +++++||++.+++.+++.+++.+......   +. .....+..+++.++++.+++..+..++.+.+.|||||||||+|||
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAr  156 (250)
T 2d2e_A           81 GLFLAFQYPVEVPGVTIANFLRLALQAKL---GR-EVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQ  156 (250)
T ss_dssp             TBCCCCCCCC-CCSCBHHHHHHHHHHHHH---TS-CCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred             cEEEeccCCccccCCCHHHHHHHHHHhhc---cc-cCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence            68899999999999999998876432111   11 011223345677889999994356777765239999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHh
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEE  316 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~  316 (325)
                      ||+.+|++|||||||+|||+.+++.++++|+++.++|+|||+||||++++..++||++++|++|++++.|+++....+..
T Consensus       157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  236 (250)
T 2d2e_A          157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEA  236 (250)
T ss_dssp             HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHHHHHHH
T ss_pred             HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHHHHHHH
Confidence            99999999999999999999999999999999976789999999999988876459999999999999998764333333


Q ss_pred             CC
Q 020520          317 GG  318 (325)
Q Consensus       317 ~~  318 (325)
                      .+
T Consensus       237 ~~  238 (250)
T 2d2e_A          237 KG  238 (250)
T ss_dssp             HC
T ss_pred             HH
Confidence            33

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1e-54  Score=397.09  Aligned_cols=227  Identities=26%  Similarity=0.369  Sum_probs=190.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+.....
T Consensus         5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~   80 (257)
T 1g6h_A            5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY   80 (257)
T ss_dssp             CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred             CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHHH
Confidence            348999999999964  5799999999999999999999999999999999998  689999999999998766544333


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC--------CCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ--------PEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG  226 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg  226 (325)
                      +..++++||++.+++.+|+.+++.+.....  ..+.        ......+...++.++++.+++. +..++.+.+ |||
T Consensus        81 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSg  156 (257)
T 1g6h_A           81 HYGIVRTFQTPQPLKEMTVLENLLIGEICP--GESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGE-LSG  156 (257)
T ss_dssp             HHTEEECCCCCGGGGGSBHHHHHHGGGTST--TSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCH
T ss_pred             hCCEEEEccCCccCCCCcHHHHHHHHHhhh--ccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchh-CCH
Confidence            345899999998888899999986542110  0010        0011233345678889999996 567777764 999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..+ ||++++|++|++++.|
T Consensus       157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~i~~~g  235 (257)
T 1g6h_A          157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNY-IDHLYVMFNGQIIAEG  235 (257)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGG-CSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh-CCEEEEEECCEEEEEe
Confidence            999999999999999999999999999999999999999999976689999999999998877 6999999999999998


Q ss_pred             CccH
Q 020520          307 DASI  310 (325)
Q Consensus       307 ~~~~  310 (325)
                      +++.
T Consensus       236 ~~~~  239 (257)
T 1g6h_A          236 RGEE  239 (257)
T ss_dssp             ESHH
T ss_pred             CHHH
Confidence            8764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.6e-54  Score=414.10  Aligned_cols=217  Identities=24%  Similarity=0.341  Sum_probs=193.6

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...++..   .
T Consensus         3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~G~I~i~G~~~~~~~~~~---r   75 (381)
T 3rlf_A            3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE---R   75 (381)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTCCGGG---S
T ss_pred             EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC--CCCCCeEEEECCEECCCCCHHH---C
Confidence            6999999999964  6799999999999999999999999999999999998  6899999999999998766543   4


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+|+.+|+.++....    +   ....+..+++.++++.+++. ++.++++.+ |||||||||+|||
T Consensus        76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~----~---~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~-LSGGqrQRVaiAr  146 (381)
T 3rlf_A           76 GVGMVFQSYALYPHLSVAENMSFGLKLA----G---AKKEVINQRVNQVAEVLQLA-HLLDRKPKA-LSGGQRQRVAIGR  146 (381)
T ss_dssp             CEEEECTTCCCCTTSCHHHHHTHHHHHT----T---CCHHHHHHHHHHHHHHTTCG-GGTTCCGGG-SCHHHHHHHHHHH
T ss_pred             CEEEEecCCcCCCCCCHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCc-hhhcCChhH-CCHHHHHHHHHHH
Confidence            5899999999999999999987764321    1   23455567788999999996 678888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||++||+..+..+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus       147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~-aDri~vl~~G~i~~~g~~~~  220 (381)
T 3rlf_A          147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL-ADKIVVLDAGRVAQVGKPLE  220 (381)
T ss_dssp             HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEEeCHHH
Confidence            999999999999999999999999999999999765 89999999999999888 69999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=5.5e-54  Score=393.25  Aligned_cols=222  Identities=23%  Similarity=0.331  Sum_probs=188.1

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC--CCCHHH
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL--EMEPEE  152 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~--~~~~~~  152 (325)
                      .++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++.  ......
T Consensus        22 ~~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~~   97 (263)
T 2olj_A           22 LQMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL--EDFDEGEIIIDGINLKAKDTNLNK   97 (263)
T ss_dssp             CCSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEESSSTTCCHHH
T ss_pred             hheEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEECCEECCCccccHHH
Confidence            348999999999963  5799999999999999999999999999999999998  6899999999999985  222222


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      . +..++|+||++.+++.+|+.+++.+....   ..+   ....+..+++.++++.+++. +..++.+.+ |||||||||
T Consensus        98 ~-~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~---~~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~-LSgGqkQRv  168 (263)
T 2olj_A           98 V-REEVGMVFQRFNLFPHMTVLNNITLAPMK---VRK---WPREKAEAKAMELLDKVGLK-DKAHAYPDS-LSGGQAQRV  168 (263)
T ss_dssp             H-HHHEEEECSSCCCCTTSCHHHHHHHHHHH---TSC---CCHHHHHHHHHHHHHHTTCG-GGTTSCGGG-SCHHHHHHH
T ss_pred             H-hCcEEEEeCCCcCCCCCCHHHHHHHHHHH---HcC---CCHHHHHHHHHHHHHHCCCc-hHhcCChhh-CCHHHHHHH
Confidence            2 23588999999999999999998764211   011   12233445678889999996 567777764 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..+ ||++++|++|++++.|+++.
T Consensus       169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~i~~~g~~~~  245 (263)
T 2olj_A          169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV-GDRVLFMDGGYIIEEGKPED  245 (263)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999999999999999976689999999999999887 69999999999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.2e-54  Score=412.28  Aligned_cols=221  Identities=21%  Similarity=0.308  Sum_probs=189.0

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-HHh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-ERS  154 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-~~~  154 (325)
                      ++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...... ...
T Consensus         3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~G~I~i~G~~i~~~~~~~~~~   78 (359)
T 3fvq_A            3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF--EQPDSGEISLSGKTIFSKNTNLPVR   78 (359)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEESSSCBCCGG
T ss_pred             cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC--CCCCCcEEEECCEECcccccccchh
Confidence            37999999999964  6799999999999999999999999999999999998  689999999999998321110 112


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|+||++.+|+.+|+.+|+.++...       ......+..+++.++++.+++. ++.++.+.+ |||||||||+|
T Consensus        79 ~r~ig~vfQ~~~l~p~ltV~eni~~~l~~-------~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~-LSGGq~QRVal  149 (359)
T 3fvq_A           79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGN-------GKGRTAQERQRIEAMLELTGIS-ELAGRYPHE-LSGGQQQRAAL  149 (359)
T ss_dssp             GSCCEEECTTCCCCTTSCHHHHHHTTSTT-------SSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGG-SCHHHHHHHHH
T ss_pred             hCCEEEEeCCCcCCCCCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHHcCCc-hHhcCChhh-CCHHHHHHHHH
Confidence            24589999999999999999998765321       1122344556788899999996 678888875 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+..+..+++.|.++. +.|.|+|+||||++++..+ ||+|++|++|+|++.|+++.
T Consensus       150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~-aDri~vl~~G~i~~~g~~~e  225 (359)
T 3fvq_A          150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY-ADRIAVMKQGRILQTASPHE  225 (359)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-CCEEEEEECCEEEEEeCHHH
Confidence            999999999999999999999999999999888775 4589999999999999888 79999999999999998753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=5e-54  Score=393.55  Aligned_cols=222  Identities=23%  Similarity=0.342  Sum_probs=188.2

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC--------
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE--------  147 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~--------  147 (325)
                      ++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++..        
T Consensus         5 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~   80 (262)
T 1b0u_A            5 NKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIVNGQNINLVRDKDGQL   80 (262)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCEEECTTSSE
T ss_pred             ceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEccccccccccc
Confidence            47999999999963  5799999999999999999999999999999999998  68999999999999851        


Q ss_pred             --CCHHH--HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccc-ccccCCC
Q 020520          148 --MEPEE--RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDF-LNRNVNE  222 (325)
Q Consensus       148 --~~~~~--~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~  222 (325)
                        .+...  ..+..++|+||++.+++.+|+.+++.+....   ..+   ....+...++.++++.+++. +. .++.+.+
T Consensus        81 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~---~~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~  153 (262)
T 1b0u_A           81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ---VLG---LSKHDARERALKYLAKVGID-ERAQGKYPVH  153 (262)
T ss_dssp             EESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH---TTC---CCHHHHHHHHHHHHHHTTCC-HHHHTSCGGG
T ss_pred             cccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH---hcC---CCHHHHHHHHHHHHHHcCCC-chhhcCCccc
Confidence              33321  1123589999999999999999998764211   011   12233345678899999996 56 6777765


Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                       |||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|+|||+||||++++..+ ||++++|++|++
T Consensus       154 -LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~i  231 (262)
T 1b0u_A          154 -LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV-SSHVIFLHQGKI  231 (262)
T ss_dssp             -SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-CSEEEEEETTEE
T ss_pred             -CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEE
Confidence             999999999999999999999999999999999999999999999976689999999999999887 699999999999


Q ss_pred             EEEcCccH
Q 020520          303 IKTGDASI  310 (325)
Q Consensus       303 v~~g~~~~  310 (325)
                      ++.|+++.
T Consensus       232 ~~~g~~~~  239 (262)
T 1b0u_A          232 EEEGDPEQ  239 (262)
T ss_dssp             EEEECHHH
T ss_pred             EEeCCHHH
Confidence            99998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=5.4e-54  Score=394.10  Aligned_cols=219  Identities=21%  Similarity=0.296  Sum_probs=190.1

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||++.|++  +++|+|+||+|++||++||+||||||||||+|+|+|+  ++|++|+|.++|+++...+...++
T Consensus         9 ~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~   84 (266)
T 4g1u_C            9 VALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--LSPSHGECHLLGQNLNSWQPKALA   84 (266)
T ss_dssp             CCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS--SCCSSCEEEETTEETTTSCHHHHH
T ss_pred             cceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECCcCCHHHHh
Confidence            468999999999964  6899999999999999999999999999999999998  789999999999999887765543


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      + .+++++|++.+++.+++.+++.+....    ..     ..+..+++.++++.+++. ++.++.+.+ |||||||||+|
T Consensus        85 ~-~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~-----~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~QRv~i  152 (266)
T 4g1u_C           85 R-TRAVMRQYSELAFPFSVSEVIQMGRAP----YG-----GSQDRQALQQVMAQTDCL-ALAQRDYRV-LSGGEQQRVQL  152 (266)
T ss_dssp             H-HEEEECSCCCCCSCCBHHHHHHGGGTT----SC-----STTHHHHHHHHHHHTTCS-TTTTSBGGG-CCHHHHHHHHH
T ss_pred             h-eEEEEecCCccCCCCCHHHHHHhhhhh----cC-----cHHHHHHHHHHHHHcCCh-hHhcCCccc-CCHHHHHHHHH
Confidence            3 478999999888889999988654321    11     122345677889999996 567777764 99999999999


Q ss_pred             HHHHHh------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          235 LQLAVL------GADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       235 AraL~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||++      +|++|||||||+|||+.+++.++++|++++++ ++|||+||||++++..+ ||++++|++|++++.|+
T Consensus       153 AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~-~d~v~vl~~G~i~~~g~  231 (266)
T 4g1u_C          153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALY-ADRIMLLAQGKLVACGT  231 (266)
T ss_dssp             HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHH-CSEEEEEETTEEEEEEC
T ss_pred             HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHh-CCEEEEEECCEEEEEcC
Confidence            999999      99999999999999999999999999999755 57999999999999887 69999999999999998


Q ss_pred             ccH
Q 020520          308 ASI  310 (325)
Q Consensus       308 ~~~  310 (325)
                      ++.
T Consensus       232 ~~~  234 (266)
T 4g1u_C          232 PEE  234 (266)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=4.6e-54  Score=401.30  Aligned_cols=260  Identities=18%  Similarity=0.266  Sum_probs=196.8

Q ss_pred             hhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHH
Q 020520           40 SNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKS  119 (325)
Q Consensus        40 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKS  119 (325)
                      ..++.+..+..|+.++++............+.......|+++||+|+|++ ++.+|+|+||+|++||++||+||||||||
T Consensus        16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKS   94 (306)
T 3nh6_A           16 PRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKS   94 (306)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHH
Confidence            35667778888988887654432221111111223457999999999964 46799999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHH
Q 020520          120 TLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFY  199 (325)
Q Consensus       120 TLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (325)
                      ||+++|+|+  ++|++|+|.++|+++..++...+++ .++|+||++.+|+ .|+.+|+.++.         ......+..
T Consensus        95 TLl~ll~gl--~~p~~G~I~i~G~~i~~~~~~~~r~-~i~~v~Q~~~lf~-~Tv~eNi~~~~---------~~~~~~~~~  161 (306)
T 3nh6_A           95 TILRLLFRF--YDISSGCIRIDGQDISQVTQASLRS-HIGVVPQDTVLFN-DTIADNIRYGR---------VTAGNDEVE  161 (306)
T ss_dssp             HHHHHHTTS--SCCSEEEEEETTEETTSBCHHHHHH-TEEEECSSCCCCS-EEHHHHHHTTS---------TTCCHHHHH
T ss_pred             HHHHHHHcC--CCCCCcEEEECCEEcccCCHHHHhc-ceEEEecCCccCc-ccHHHHHHhhc---------ccCCHHHHH
Confidence            999999998  7899999999999999888765543 5899999999885 59999876532         111122211


Q ss_pred             H-----hHHHHHHhcCCcc-ccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC
Q 020520          200 A-----YLYPKLERLSMKT-DFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK  273 (325)
Q Consensus       200 ~-----~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g  273 (325)
                      .     .+.+.++.+.... ....+.. .+|||||||||+|||||+.+|+||||||||++||+.+++.|++.|+++.+ +
T Consensus       162 ~~~~~~~l~~~i~~lp~gl~t~~~~~g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~  239 (306)
T 3nh6_A          162 AAAQAAGIHDAIMAFPEGYRTQVGERG-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-N  239 (306)
T ss_dssp             HHHHHHTCHHHHHHSTTGGGCEESTTS-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHhCcHHHHHhccchhhhHhcCCc-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C
Confidence            1     1222333332111 1222333 35999999999999999999999999999999999999999999999864 5


Q ss_pred             cEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020520          274 NSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY  319 (325)
Q Consensus       274 ~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~  319 (325)
                      +|+|+||||++.+..  ||+|++|++|+|++.|+++  +++...+.
T Consensus       240 ~Tvi~itH~l~~~~~--aD~i~vl~~G~iv~~G~~~--el~~~~~~  281 (306)
T 3nh6_A          240 RTTIVVAHRLSTVVN--ADQILVIKDGCIVERGRHE--ALLSRGGV  281 (306)
T ss_dssp             SEEEEECCSHHHHHT--CSEEEEEETTEEEEEECHH--HHHHHTSH
T ss_pred             CEEEEEEcChHHHHc--CCEEEEEECCEEEEECCHH--HHHhcChH
Confidence            899999999998865  6999999999999999875  45555553

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.6e-53  Score=388.84  Aligned_cols=221  Identities=25%  Similarity=0.362  Sum_probs=188.5

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..++|+++||+++|++  +++|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++.. .....
T Consensus        12 ~~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~~-~~~~~   86 (256)
T 1vpl_A           12 HMGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--IKPSSGIVTVFGKNVVE-EPHEV   86 (256)
T ss_dssp             --CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTT-CHHHH
T ss_pred             cCCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCc-cHHHH
Confidence            4578999999999963  6799999999999999999999999999999999998  68999999999999865 23222


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                       +..++|+||++.+++.+|+.+++.+.....    +   ....+..+++.++++.+++. +..++.+.+ |||||||||+
T Consensus        87 -~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~---~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~-LSgGq~qRv~  156 (256)
T 1vpl_A           87 -RKLISYLPEEAGAYRNMQGIEYLRFVAGFY----A---SSSSEIEEMVERATEIAGLG-EKIKDRVST-YSKGMVRKLL  156 (256)
T ss_dssp             -HTTEEEECTTCCCCTTSBHHHHHHHHHHHH----C---CCHHHHHHHHHHHHHHHCCG-GGGGSBGGG-CCHHHHHHHH
T ss_pred             -hhcEEEEcCCCCCCCCCcHHHHHHHHHHHc----C---CChHHHHHHHHHHHHHCCCc-hHhcCChhh-CCHHHHHHHH
Confidence             245899999999999899999987643211    1   11233345677889999996 567777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~-~d~v~~l~~G~i~~~g~~~~  232 (256)
T 1vpl_A          157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL-CDRIALIHNGTIVETGTVEE  232 (256)
T ss_dssp             HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT-CSEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH-CCEEEEEECCEEEEecCHHH
Confidence            99999999999999999999999999999999999976689999999999999887 69999999999999987653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=2.8e-53  Score=402.94  Aligned_cols=220  Identities=18%  Similarity=0.323  Sum_probs=192.5

Q ss_pred             CCCcEEEEEEEEEE-CCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH
Q 020520           74 SQPLLQVTGLTAVI-AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        74 ~~~~l~~~~ls~~y-~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~  152 (325)
                      ..++|+++||+++| ++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...+.. 
T Consensus        11 ~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~-   85 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL--ERPTKGDVWIGGKRVTDLPPQ-   85 (355)
T ss_dssp             CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTCCGG-
T ss_pred             CCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCEECCcCChh-
Confidence            45689999999999 53  5799999999999999999999999999999999998  689999999999998765432 


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                        +..++|+||++.+|+.+|+.+++.+.....    +   ....+..+++.++++.+++. ++.++.+.+ |||||||||
T Consensus        86 --~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~----~---~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~-LSGGq~QRv  154 (355)
T 1z47_A           86 --KRNVGLVFQNYALFQHMTVYDNVSFGLREK----R---VPKDEMDARVRELLRFMRLE-SYANRFPHE-LSGGQQQRV  154 (355)
T ss_dssp             --GSSEEEECGGGCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHTTCG-GGTTSCGGG-SCHHHHHHH
T ss_pred             --hCcEEEEecCcccCCCCCHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHcCCh-hHhcCCccc-CCHHHHHHH
Confidence              245899999999999999999987754321    1   12344456788899999996 678888865 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +|||||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|+|++.|+++.
T Consensus       155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~-adri~vl~~G~i~~~g~~~~  232 (355)
T 1z47_A          155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV-ADRVLVLHEGNVEQFGTPEE  232 (355)
T ss_dssp             HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999999755 89999999999999887 69999999999999998753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=4e-53  Score=403.05  Aligned_cols=217  Identities=23%  Similarity=0.341  Sum_probs=190.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...++..   .
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~---r   75 (362)
T 2it1_A            3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--YKPTSGKIYFDEKDVTELPPKD---R   75 (362)
T ss_dssp             CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGGG---T
T ss_pred             EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--CCCCceEEEECCEECCcCCHhH---C
Confidence            6999999999963  6799999999999999999999999999999999998  6899999999999997765432   3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+|+.+|+.+.....    +   ....+..+++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~----~---~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~-LSGGq~QRvalAr  146 (362)
T 2it1_A           76 NVGLVFQNWALYPHMTVYKNIAFPLELR----K---APREEIDKKVREVAKMLHID-KLLNRYPWQ-LSGGQQQRVAIAR  146 (362)
T ss_dssp             TEEEECTTCCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHTTCT-TCTTCCGGG-SCHHHHHHHHHHH
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCc-hHhhCChhh-CCHHHHHHHHHHH
Confidence            5899999999999999999987764321    1   12344456788899999996 677888865 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|+|++.|+++.
T Consensus       147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~-adri~vl~~G~i~~~g~~~~  220 (362)
T 2it1_A          147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAM-ADRIAVIREGEILQVGTPDE  220 (362)
T ss_dssp             HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999999654 89999999999999887 69999999999999998753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=3.2e-53  Score=403.35  Aligned_cols=217  Identities=21%  Similarity=0.338  Sum_probs=188.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...++.   +.
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~---~r   75 (359)
T 2yyz_A            3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--YKPTSGEIYFDDVLVNDIPPK---YR   75 (359)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGG---GT
T ss_pred             EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC--CCCCccEEEECCEECCCCChh---hC
Confidence            6999999999963  6799999999999999999999999999999999998  689999999999999776543   23


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+|+.+++.+....       ......+..+++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~-------~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~-LSgGq~QRvalAr  146 (359)
T 2yyz_A           76 EVGMVFQNYALYPHMTVFENIAFPLRA-------RRISKDEVEKRVVEIARKLLID-NLLDRKPTQ-LSGGQQQRVALAR  146 (359)
T ss_dssp             TEEEECSSCCCCTTSCHHHHHHGGGSS-------SCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGG-SCHHHHHHHHHHH
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHcCCc-hHhcCChhh-CCHHHHHHHHHHH
Confidence            589999999999999999998764311       0111222335678889999996 678888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus       147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~-adri~vl~~G~i~~~g~~~~  220 (359)
T 2yyz_A          147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTM-ASRIAVFNQGKLVQYGTPDE  220 (359)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999999999999998754 89999999999999887 69999999999999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=6.4e-53  Score=402.98  Aligned_cols=217  Identities=23%  Similarity=0.356  Sum_probs=184.6

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...++..   .
T Consensus        11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~---r   83 (372)
T 1v43_A           11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKD---R   83 (372)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGGG---G
T ss_pred             eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCceEEEECCEECCCCChhh---C
Confidence            6999999999963  6799999999999999999999999999999999998  6899999999999997765432   3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+|+.+++.+.....       .....+..+++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~-------~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~-LSGGq~QRvalAr  154 (372)
T 1v43_A           84 NISMVFQSYAVWPHMTVYENIAFPLKIK-------KFPKDEIDKRVRWAAELLQIE-ELLNRYPAQ-LSGGQRQRVAVAR  154 (372)
T ss_dssp             TEEEEEC------CCCHHHHHHTTCC---------CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTT-CCSSCHHHHHHHH
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHHHHH
Confidence            5899999999999999999987643211       122344456788899999996 678888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus       155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~-adri~vl~~G~i~~~g~~~~  228 (372)
T 1v43_A          155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM-GDRIAVMNRGQLLQIGSPTE  228 (372)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999999999999999755 89999999999999887 69999999999999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1e-52  Score=401.96  Aligned_cols=217  Identities=22%  Similarity=0.305  Sum_probs=189.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC------CCH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE------MEP  150 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~------~~~  150 (325)
                      +|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++..      .++
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~~~~~~~~~~~~~   78 (372)
T 1g29_1            3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEKGIFVPP   78 (372)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred             EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC--CCCCccEEEECCEECccccccccCCH
Confidence            6999999999963  6799999999999999999999999999999999998  68999999999998854      433


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      .   +..++|+||++.+|+.+|+.+++.+.....    +   ....+..+++.++++.+++. ++.++.+.+ |||||||
T Consensus        79 ~---~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~----~---~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~-LSGGq~Q  146 (372)
T 1g29_1           79 K---DRDIAMVFQSYALYPHMTVYDNIAFPLKLR----K---VPRQEIDQRVREVAELLGLT-ELLNRKPRE-LSGGQRQ  146 (372)
T ss_dssp             G---GSSEEEECSCCCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHHTCG-GGTTCCGGG-SCHHHHH
T ss_pred             h---HCCEEEEeCCCccCCCCCHHHHHHHHHHHc----C---CCHHHHHHHHHHHHHHCCCc-hHhcCCccc-CCHHHHH
Confidence            2   245899999999999999999987764321    1   12334456788899999996 677888865 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+|||||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|+++
T Consensus       147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~-adri~vl~~G~i~~~g~~~  225 (372)
T 1g29_1          147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTM-GDRIAVMNRGVLQQVGSPD  225 (372)
T ss_dssp             HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh-CCEEEEEeCCEEEEeCCHH
Confidence            999999999999999999999999999999999999998754 89999999999999887 6999999999999999875


Q ss_pred             H
Q 020520          310 I  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       226 ~  226 (372)
T 1g29_1          226 E  226 (372)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=5.2e-53  Score=401.58  Aligned_cols=217  Identities=21%  Similarity=0.315  Sum_probs=188.8

Q ss_pred             cEEEEEEEEEECCCccc--ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC-----CC
Q 020520           77 LLQVTGLTAVIAESKQE--ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE-----ME  149 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~--iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~-----~~  149 (325)
                      +|+++||+++|++  ++  +|+|+||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++..     .+
T Consensus         3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~~~   78 (353)
T 1oxx_K            3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--DVPSTGELYFDDRLVASNGKLIVP   78 (353)
T ss_dssp             CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--SCCSEEEEEETTEEEEETTEESSC
T ss_pred             EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECcccccccCC
Confidence            6999999999963  56  99999999999999999999999999999999998  68999999999998854     32


Q ss_pred             HHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       150 ~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      ..   +..++|+||++.+|+.+|+.+++.+....       ......+..+++.++++.+++. ++.++.+.+ ||||||
T Consensus        79 ~~---~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-------~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~-LSGGq~  146 (353)
T 1oxx_K           79 PE---DRKIGMVFQTWALYPNLTAFENIAFPLTN-------MKMSKEEIRKRVEEVAKILDIH-HVLNHFPRE-LSGAQQ  146 (353)
T ss_dssp             GG---GSCEEEEETTSCCCTTSCHHHHHHGGGTT-------SSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGG-SCHHHH
T ss_pred             hh---hCCEEEEeCCCccCCCCCHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCCc-hHhcCChhh-CCHHHH
Confidence            22   24589999999999999999998765321       1122344456788899999996 677888865 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+|||||+.+|++|||||||++||+..++.+++.|+++.++ |.|+|+||||++++..+ ||+|++|++|++++.|++
T Consensus       147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~-adri~vl~~G~i~~~g~~  225 (353)
T 1oxx_K          147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI-ADRVGVLVKGKLVQVGKP  225 (353)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCH
Confidence            9999999999999999999999999999999999999999654 89999999999999887 699999999999999987


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       226 ~~  227 (353)
T 1oxx_K          226 ED  227 (353)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.1e-52  Score=398.23  Aligned_cols=213  Identities=22%  Similarity=0.374  Sum_probs=186.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++||+++|++  + +|+++||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...++..   .
T Consensus         1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~~~g~~i~~~~~~~---r   72 (348)
T 3d31_A            1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--HVPDSGRILLDGKDVTDLSPEK---H   72 (348)
T ss_dssp             CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--SCCSEEEEEETTEECTTSCHHH---H
T ss_pred             CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCEECCCCchhh---C
Confidence            5899999999963  5 99999999999999999999999999999999998  6899999999999997765432   2


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+|+.+|+.+.....    +..   ..   +++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~----~~~---~~---~~v~~~l~~~~L~-~~~~~~~~~-LSgGq~QRvalAr  140 (348)
T 3d31_A           73 DIAFVYQNYSLFPHMNVKKNLEFGMRMK----KIK---DP---KRVLDTARDLKIE-HLLDRNPLT-LSGGEQQRVALAR  140 (348)
T ss_dssp             TCEEECTTCCCCTTSCHHHHHHHHHHHH----CCC---CH---HHHHHHHHHTTCT-TTTTSCGGG-SCHHHHHHHHHHH
T ss_pred             cEEEEecCcccCCCCCHHHHHHHHHHHc----CCC---HH---HHHHHHHHHcCCc-hHhcCChhh-CCHHHHHHHHHHH
Confidence            4789999999999999999987764321    111   11   4577889999996 677888865 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||++||+..++.+.+.|+++.+ .|.|+|+||||++++..+ ||+|++|++|++++.|+++.
T Consensus       141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~-adri~vl~~G~i~~~g~~~~  214 (348)
T 3d31_A          141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM-ADRIAVVMDGKLIQVGKPEE  214 (348)
T ss_dssp             HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-CSEEEEESSSCEEEEECHHH
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999965 489999999999999887 69999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.3e-52  Score=387.26  Aligned_cols=225  Identities=22%  Similarity=0.231  Sum_probs=184.1

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC--CCCHHH
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL--EMEPEE  152 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~--~~~~~~  152 (325)
                      .++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++.  ..+...
T Consensus        19 ~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~   94 (279)
T 2ihy_A           19 HMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY--EPATSGTVNLFGKMPGKVGYSAET   94 (279)
T ss_dssp             CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTBCCC---CCHHH
T ss_pred             CceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCeEEEECCEEcccccCCHHH
Confidence            447999999999964  6799999999999999999999999999999999998  6899999999999886  444443


Q ss_pred             HhhccEEEeccCCccC--CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          153 RSLAGLFMSFQSPVEI--PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      ++ ..++|+||++.++  ..+|+.+++.+.........+.   ...+..+++.++++.+++. +..++.+.+ |||||||
T Consensus        95 ~~-~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~-~~~~~~~~~-LSgGqkq  168 (279)
T 2ihy_A           95 VR-QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD---IDDEIRNEAHQLLKLVGMS-AKAQQYIGY-LSTGEKQ  168 (279)
T ss_dssp             HH-TTEEEECHHHHTTSCTTSBHHHHHHTTC------------CCHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCHHHHH
T ss_pred             Hc-CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccC---CcHHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHH
Confidence            33 4589999997643  3469999886542110000010   1123345677889999995 567777765 9999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEE--EEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL--LMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--IivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      ||+|||||+.+|++|||||||+|||+.+++.++++|++++++|+||  |+||||++++..+ ||++++|++|++++.|++
T Consensus       169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~-~d~v~~l~~G~i~~~g~~  247 (279)
T 2ihy_A          169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITAN-FSKILLLKDGQSIQQGAV  247 (279)
T ss_dssp             HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTT-CCEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHh-CCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999997658899  9999999998877 699999999999999876


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       248 ~~  249 (279)
T 2ihy_A          248 ED  249 (279)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=4e-52  Score=381.77  Aligned_cols=217  Identities=26%  Similarity=0.373  Sum_probs=181.2

Q ss_pred             cEEEEEEEEEECCCc---ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           77 LLQVTGLTAVIAESK---QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~---~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      +|+++||+++|+.++   +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...   ..
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~---~~   76 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLYDGERKKGY---EI   76 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCHH---HH
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEECCEECchH---Hh
Confidence            689999999996222   4699999999999999999999999999999999998  689999999999987532   22


Q ss_pred             hhccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc-ccccccCCCCCChHHHHH
Q 020520          154 SLAGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT-DFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       154 ~~~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgGqrQR  231 (325)
                       +..++|+||++ ..++..|+.+++.+....    . ..   ..+..+++.++++.+++.. +..++.+.+ ||||||||
T Consensus        77 -~~~i~~v~q~~~~~~~~~tv~enl~~~~~~----~-~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-LSgGq~qR  146 (266)
T 2yz2_A           77 -RRNIGIAFQYPEDQFFAERVFDEVAFAVKN----F-YP---DRDPVPLVKKAMEFVGLDFDSFKDRVPFF-LSGGEKRR  146 (266)
T ss_dssp             -GGGEEEECSSGGGGCCCSSHHHHHHHTTTT----T-CT---TSCSHHHHHHHHHHTTCCHHHHTTCCGGG-SCHHHHHH
T ss_pred             -hhhEEEEeccchhhcCCCcHHHHHHHHHHh----c-CC---HHHHHHHHHHHHHHcCcCCcccccCChhh-CCHHHHHH
Confidence             23589999996 456678999988664211    0 11   1112345677899999951 456777764 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |+|||||+.+|++|||||||+|||+.+++.+++.|++++++|.|||+||||++++..+ ||++++|++|++++.|+++
T Consensus       147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~-~d~v~~l~~G~i~~~g~~~  223 (266)
T 2yz2_A          147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINH-VDRVVVLEKGKKVFDGTRM  223 (266)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGG-CSEEEEEETTEEEEEEEHH
T ss_pred             HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999975689999999999998877 6999999999999988765

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=4.8e-52  Score=375.67  Aligned_cols=212  Identities=19%  Similarity=0.303  Sum_probs=181.0

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++||+++|++    +|+|+||+|++ |+++|+||||||||||+|+|+|+  ++|++|+|.++|+++......   +.
T Consensus         1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~---~~   70 (240)
T 2onk_A            1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI--VKPDRGEVRLNGADITPLPPE---RR   70 (240)
T ss_dssp             CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCTT---TS
T ss_pred             CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCchh---hC
Confidence            5789999999952    59999999999 99999999999999999999998  689999999999998653321   23


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+++.+|+.+++.+....    .     ......+++.++++.+++. +..++.+.+ |||||||||+|||
T Consensus        71 ~i~~v~q~~~l~~~ltv~enl~~~~~~----~-----~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGqkqRv~lAr  139 (240)
T 2onk_A           71 GIGFVPQDYALFPHLSVYRNIAYGLRN----V-----ERVERDRRVREMAEKLGIA-HLLDRKPAR-LSGGERQRVALAR  139 (240)
T ss_dssp             CCBCCCSSCCCCTTSCHHHHHHTTCTT----S-----CHHHHHHHHHHHHHTTTCT-TTTTCCGGG-SCHHHHHHHHHHH
T ss_pred             cEEEEcCCCccCCCCcHHHHHHHHHHH----c-----CCchHHHHHHHHHHHcCCH-HHhcCChhh-CCHHHHHHHHHHH
Confidence            578999999999999999988654210    0     0111245677889999996 567777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       140 al~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~  213 (240)
T 2onk_A          140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML-ADEVAVMLNGRIVEKGKLKE  213 (240)
T ss_dssp             HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999999999998654 88999999999998887 69999999999999997653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1.1e-51  Score=379.85  Aligned_cols=224  Identities=21%  Similarity=0.307  Sum_probs=180.4

Q ss_pred             CCcEEEEEEEEEECC-CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           75 QPLLQVTGLTAVIAE-SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~-~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..+|+++||+++|++ ..+++|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...+
T Consensus        14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~   91 (271)
T 2ixe_A           14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL--YQPTGGKVLLDGEPLVQYDHHYL   91 (271)
T ss_dssp             CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGGGBCHHHH
T ss_pred             CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECCEEcccCCHHHH
Confidence            458999999999964 125799999999999999999999999999999999998  78999999999999876554433


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC-CCCChHHHHHhHHHHHHhc--CCccccccccCCCCCChHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ-PEIGPIEFYAYLYPKLERL--SMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                      + ..++|+||++.+++ .|+.+++.+...    .... ...........+.+.++.+  ++. ...++.+. +|||||||
T Consensus        92 ~-~~i~~v~Q~~~l~~-~tv~enl~~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~-~LSgGq~Q  163 (271)
T 2ixe_A           92 H-TQVAAVGQEPLLFG-RSFRENIAYGLT----RTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGN-QLSGGQRQ  163 (271)
T ss_dssp             H-HHEEEECSSCCCCS-SBHHHHHHTTCS----SCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGT-TSCHHHHH
T ss_pred             h-ccEEEEecCCcccc-ccHHHHHhhhcc----cCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcC-CCCHHHHH
Confidence            2 35899999998887 499998865321    0000 0000001112345667777  554 44566665 49999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      ||+|||||+.+|+||||||||+|||+.+++.+++.|+++.+ +|+|||+||||++++. . ||+|++|++|++++.|+++
T Consensus       164 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~-~d~v~~l~~G~i~~~g~~~  241 (271)
T 2ixe_A          164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-R-AHHILFLKEGSVCEQGTHL  241 (271)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-T-CSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999999864 4899999999999886 4 7999999999999999865


Q ss_pred             H
Q 020520          310 I  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       242 ~  242 (271)
T 2ixe_A          242 Q  242 (271)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=2.2e-51  Score=372.93  Aligned_cols=212  Identities=24%  Similarity=0.375  Sum_probs=173.1

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      -++++||+++|+++++.+|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...++ .
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~i~g~~~~~~~~~~~~-~   83 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLIDGHDLALADPNWLR-R   83 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHH-H
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHH-h
Confidence            5899999999942236799999999999999999999999999999999998  789999999999999876654433 3


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----------ccccccCCCCCCh
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----------DFLNRNVNEGFSG  226 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg  226 (325)
                      .++|+||++.+++ .|+.+++.+..         .....    +++.++++.+++..          ...++.+. +|||
T Consensus        84 ~i~~v~Q~~~l~~-~tv~enl~~~~---------~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~-~LSg  148 (247)
T 2ff7_A           84 QVGVVLQDNVLLN-RSIIDNISLAN---------PGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGA-GLSG  148 (247)
T ss_dssp             HEEEECSSCCCTT-SBHHHHHTTTC---------TTCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTT-CCCH
T ss_pred             cEEEEeCCCcccc-ccHHHHHhccC---------CCCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCC-CCCH
Confidence            5889999998876 59988875431         01111    12334455555431          12233334 5999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      ||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++. +|+|||+||||++.+. . ||++++|++|++++.|
T Consensus       149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~-~-~d~v~~l~~G~i~~~g  225 (247)
T 2ff7_A          149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVK-N-ADRIIVMEKGKIVEQG  225 (247)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGT-T-SSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999999985 5889999999999875 4 7999999999999999


Q ss_pred             Ccc
Q 020520          307 DAS  309 (325)
Q Consensus       307 ~~~  309 (325)
                      +++
T Consensus       226 ~~~  228 (247)
T 2ff7_A          226 KHK  228 (247)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            765

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=2.9e-50  Score=406.31  Aligned_cols=273  Identities=21%  Similarity=0.285  Sum_probs=209.3

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++................++++||+|+|+++++++|+|+||+|++||+
T Consensus       290 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~  369 (578)
T 4a82_A          290 LFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGET  369 (578)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCE
Confidence            34667777777888899999999999988765443222111111223457999999999976556799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+||||||||||+++|+|+  ++|++|+|.++|+++...+....++ .+++++|++.+|+. |+.+|+..+.      
T Consensus       370 ~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~l~~~-tv~eni~~~~------  439 (578)
T 4a82_A          370 VAFVGMSGGGKSTLINLIPRF--YDVTSGQILIDGHNIKDFLTGSLRN-QIGLVQQDNILFSD-TVKENILLGR------  439 (578)
T ss_dssp             EEEECSTTSSHHHHHTTTTTS--SCCSEEEEEETTEEGGGSCHHHHHH-TEEEECSSCCCCSS-BHHHHHGGGC------
T ss_pred             EEEECCCCChHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHhh-heEEEeCCCccCcc-cHHHHHhcCC------
Confidence            999999999999999999998  7899999999999998887765543 48999999999876 9998875431      


Q ss_pred             cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                         +....++..+.     +.+.++.+..+.+..-...+.+||||||||++|||||+++|++||||||||+||+.+++.+
T Consensus       440 ---~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i  516 (578)
T 4a82_A          440 ---PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII  516 (578)
T ss_dssp             ---SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence               11222222111     1122333321111111112235999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG  318 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~  318 (325)
                      .+.|+++.+ ++|+|+||||++.+..  ||+|++|++|++++.|+++  ++++..+
T Consensus       517 ~~~l~~~~~-~~t~i~itH~l~~~~~--~d~i~~l~~G~i~~~g~~~--el~~~~~  567 (578)
T 4a82_A          517 QEALDVLSK-DRTTLIVAHRLSTITH--ADKIVVIENGHIVETGTHR--ELIAKQG  567 (578)
T ss_dssp             HHHHHHHTT-TSEEEEECSSGGGTTT--CSEEEEEETTEEEEEECHH--HHHHTTS
T ss_pred             HHHHHHHcC-CCEEEEEecCHHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCc
Confidence            999999854 6899999999998864  7999999999999999875  4555555

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4.1e-50  Score=405.82  Aligned_cols=265  Identities=18%  Similarity=0.192  Sum_probs=205.1

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEE
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVH  108 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~  108 (325)
                      ..|+..+......+.+...+.+|+.++++.++.................++++||+|+|+++++++|+|+||+|++||++
T Consensus       293 ~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~  372 (587)
T 3qf4_A          293 MFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLV  372 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEE
Confidence            34555666666778888899999999887654432221111111234579999999999755578999999999999999


Q ss_pred             EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020520          109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL  188 (325)
Q Consensus       109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~  188 (325)
                      ||+||||||||||+++|+|+  ++|++|+|.++|+++...+....+. .+++++|++.+|+. |+.+|+...        
T Consensus       373 ~ivG~sGsGKSTll~~l~g~--~~~~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~-tv~eni~~~--------  440 (587)
T 3qf4_A          373 AVLGETGSGKSTLMNLIPRL--IDPERGRVEVDELDVRTVKLKDLRG-HISAVPQETVLFSG-TIKENLKWG--------  440 (587)
T ss_dssp             EEECSSSSSHHHHHHTTTTS--SCCSEEEEEESSSBGGGBCHHHHHH-HEEEECSSCCCCSE-EHHHHHTTT--------
T ss_pred             EEECCCCCCHHHHHHHHhCC--ccCCCcEEEECCEEcccCCHHHHHh-heEEECCCCcCcCc-cHHHHHhcc--------
Confidence            99999999999999999998  7899999999999998887765443 48999999998865 888887542        


Q ss_pred             CCCCCChHHHHHh-----HHHHHHhcCCccc-cccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          189 GQPEIGPIEFYAY-----LYPKLERLSMKTD-FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       189 ~~~~~~~~~~~~~-----~~~~l~~~~l~~~-~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                       .+....++..+.     +.+.++.+..+.+ ...+.. .+||||||||++|||||+++|++|||||||++||+.+++.+
T Consensus       441 -~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i  518 (587)
T 3qf4_A          441 -REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI  518 (587)
T ss_dssp             -CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSS-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCC-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence             111222222211     2233444422111 223333 45999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      .+.|+++. +|+|+|+||||++.+. . ||+|++|++|++++.|+++.
T Consensus       519 ~~~l~~~~-~~~tvi~itH~l~~~~-~-~d~i~vl~~G~i~~~g~~~e  563 (587)
T 3qf4_A          519 LDGLKRYT-KGCTTFIITQKIPTAL-L-ADKILVLHEGKVAGFGTHKE  563 (587)
T ss_dssp             HHHHHHHS-TTCEEEEEESCHHHHT-T-SSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHhC-CCCEEEEEecChHHHH-h-CCEEEEEECCEEEEECCHHH
Confidence            99999985 4789999999999886 4 79999999999999998753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=1.1e-50  Score=368.58  Aligned_cols=210  Identities=21%  Similarity=0.259  Sum_probs=180.7

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++++++||+++      ++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|+ |+|.++|+++...+...++ 
T Consensus         3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~-G~i~~~g~~~~~~~~~~~~-   72 (249)
T 2qi9_C            3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--TSGK-GSIQFAGQPLEAWSATKLA-   72 (249)
T ss_dssp             EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCE-EEEEETTEEGGGSCHHHHH-
T ss_pred             cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCC-eEEEECCEECCcCCHHHHh-
Confidence            37999999975      589999999999999999999999999999999998  6789 9999999998766554433 


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|++|++.+++.+|+.+++.+...        ....    ..++.++++.+++. +..++.+.+ |||||||||+||
T Consensus        73 ~~i~~v~q~~~~~~~~tv~e~l~~~~~--------~~~~----~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv~lA  138 (249)
T 2qi9_C           73 LHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTR----TELLNDVAGALALD-DKLGRSTNQ-LSGGEWQRVRLA  138 (249)
T ss_dssp             HHEEEECSCCCCCTTCBHHHHHHTTCS--------STTC----HHHHHHHHHHTTCG-GGTTSBGGG-CCHHHHHHHHHH
T ss_pred             ceEEEECCCCccCCCCcHHHHHHHhhc--------cCCc----HHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHHHH
Confidence            348899999998888999998764310        0011    24567789999996 567777764 999999999999


Q ss_pred             HHHHhCCC-------EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          236 QLAVLGAD-------LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       236 raL~~~p~-------lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+.+|+       +|||||||+|||+.+++.++++|+++.++|+|||++|||++++..+ ||++++|++|++++.|++
T Consensus       139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~i~~~g~~  217 (249)
T 2qi9_C          139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRR  217 (249)
T ss_dssp             HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEETTEEEEEEEH
T ss_pred             HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEeCCH
Confidence            99999999       9999999999999999999999999976689999999999999877 699999999999999876


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       218 ~~  219 (249)
T 2qi9_C          218 EE  219 (249)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=2.7e-50  Score=367.03  Aligned_cols=211  Identities=21%  Similarity=0.263  Sum_probs=177.1

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++|+++||+++|+. ++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.+              +
T Consensus         3 ~~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~--------------~   65 (253)
T 2nq2_C            3 KALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI--HRPIQGKIEV--------------Y   65 (253)
T ss_dssp             EEEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS--SCCSEEEEEE--------------C
T ss_pred             ceEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEE--------------e
Confidence            37999999999962 36799999999999999999999999999999999998  6899999982              1


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|+||++.+++.+++.+++.+.....   .+.......+..+++.++++.+++. +..++.+.+ |||||||||+||
T Consensus        66 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgGq~qrv~lA  140 (253)
T 2nq2_C           66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTH---INTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTS-LSGGQRQLILIA  140 (253)
T ss_dssp             SCEEEECSCCCCSSCCBHHHHHHGGGGGG---SCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCHHHHHHHHHH
T ss_pred             ccEEEEcCCCccCCCCCHHHHHHHhhhhh---cccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhh-CCHHHHHHHHHH
Confidence            24889999998888889999986642110   0100001123345677889999996 567777764 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+.+|++|||||||+|||+.+++.+++.|+++.++ |+|||++|||++++..+ ||++++|++|+ ++.|+++.
T Consensus       141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~-~d~v~~l~~G~-~~~g~~~~  214 (253)
T 2nq2_C          141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI-ANKTLLLNKQN-FKFGETRN  214 (253)
T ss_dssp             HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH-CSEEEEEETTE-EEEEEHHH
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh-CCEEEEEeCCe-EecCCHHH
Confidence            9999999999999999999999999999999999765 89999999999999887 69999999999 88887653

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=2.7e-49  Score=399.66  Aligned_cols=268  Identities=22%  Similarity=0.313  Sum_probs=209.5

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++....  .........+++++||+++|+++++++|+|+||+|++||+
T Consensus       294 ~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~  371 (582)
T 3b60_A          294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKT  371 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCE
Confidence            44677777777888889999999999988765442211  1111122457999999999974336799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+||||||||||+|+|+|+  ++|++|+|.++|+++...+...+++ .+++++|++.+|+. |+.+|+..+..     
T Consensus       372 ~~ivG~sGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~-tv~eni~~~~~-----  442 (582)
T 3b60_A          372 VALVGRSGSGKSTIASLITRF--YDIDEGHILMDGHDLREYTLASLRN-QVALVSQNVHLFND-TVANNIAYART-----  442 (582)
T ss_dssp             EEEEECTTSSHHHHHHHHTTT--TCCSEEEEEETTEETTTBCHHHHHH-TEEEECSSCCCCSS-BHHHHHHTTTT-----
T ss_pred             EEEECCCCCCHHHHHHHHhhc--cCCCCCeEEECCEEccccCHHHHHh-hCeEEccCCcCCCC-CHHHHHhccCC-----
Confidence            999999999999999999998  7899999999999998877655443 58999999998875 99998865310     


Q ss_pred             cCCCCCChHHHHHhHHHHHHhcCCcccccc----------ccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHH
Q 020520          188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLN----------RNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD  257 (325)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~  257 (325)
                         +....+    ++.++++.+++. ++.+          ...+.+||||||||++|||||+++|++|||||||++||+.
T Consensus       443 ---~~~~~~----~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~  514 (582)
T 3b60_A          443 ---EEYSRE----QIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE  514 (582)
T ss_dssp             ---SCCCHH----HHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred             ---CCCCHH----HHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence               111222    234445555542 1111          1123469999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020520          258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY  319 (325)
Q Consensus       258 ~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~  319 (325)
                      +++.+.+.|+++.+ |+|+|+||||++.+. . ||+|++|++|++++.|+++  ++++..+.
T Consensus       515 ~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~-~d~i~~l~~G~i~~~g~~~--~l~~~~~~  571 (582)
T 3b60_A          515 SERAIQAALDELQK-NRTSLVIAHRLSTIE-Q-ADEIVVVEDGIIVERGTHS--ELLAQHGV  571 (582)
T ss_dssp             HHHHHHHHHHHHHT-TSEEEEECSCGGGTT-T-CSEEEEEETTEEEEEECHH--HHHHHTSS
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEeccHHHHH-h-CCEEEEEECCEEEEecCHH--HHHHcCCH
Confidence            99999999999865 889999999999876 4 7999999999999999765  44555553

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=9.9e-50  Score=402.78  Aligned_cols=267  Identities=21%  Similarity=0.326  Sum_probs=208.0

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++...  ...+......+++++||+|+|+++++++|+|+||+|++||+
T Consensus       294 ~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~  371 (582)
T 3b5x_A          294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN--GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKT  371 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCE
Confidence            4567777777788888999999999988875443221  11111122457999999999974336799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+||||||||||+|+|+|+  ++|++|+|.++|+++...+....+ ..+++++|++.+|+. |+.+|+..+..     
T Consensus       372 ~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~~-~~i~~v~Q~~~l~~~-tv~eni~~~~~-----  442 (582)
T 3b5x_A          372 VALVGRSGSGKSTIANLFTRF--YDVDSGSICLDGHDVRDYKLTNLR-RHFALVSQNVHLFND-TIANNIAYAAE-----  442 (582)
T ss_pred             EEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECCEEhhhCCHHHHh-cCeEEEcCCCccccc-cHHHHHhccCC-----
Confidence            999999999999999999998  789999999999999877665543 358999999998875 89888765310     


Q ss_pred             cCCCCCChHHHHHhHHHHHHhcCCccccccc----------cCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHH
Q 020520          188 LGQPEIGPIEFYAYLYPKLERLSMKTDFLNR----------NVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVD  257 (325)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~  257 (325)
                         +....    +++.++++.+++. ++.++          ..+.+||||||||++|||||+++|++|||||||++||+.
T Consensus       443 ---~~~~~----~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~  514 (582)
T 3b5x_A          443 ---GEYTR----EQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE  514 (582)
T ss_pred             ---CCCCH----HHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence               11112    2234445555543 12211          122359999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020520          258 ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG  318 (325)
Q Consensus       258 ~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~  318 (325)
                      +++.+.+.|+++.+ |+|+|+||||++.+. . ||+|++|++|++++.|+++  ++++..+
T Consensus       515 ~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~-~d~i~~l~~G~i~~~g~~~--~l~~~~~  570 (582)
T 3b5x_A          515 SERAIQAALDELQK-NKTVLVIAHRLSTIE-Q-ADEILVVDEGEIIERGRHA--DLLAQDG  570 (582)
T ss_pred             HHHHHHHHHHHHcC-CCEEEEEecCHHHHH-h-CCEEEEEECCEEEEECCHH--HHHhCCc
Confidence            99999999999864 889999999999886 4 7999999999999999765  4445544

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1.2e-49  Score=364.22  Aligned_cols=213  Identities=21%  Similarity=0.301  Sum_probs=172.1

Q ss_pred             CcEEEEEEEEEECCCc-ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           76 PLLQVTGLTAVIAESK-QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~-~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .+|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+|+|+|+  ++| +|+|.++|+++...+....+
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~-~G~I~i~g~~i~~~~~~~~~   92 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF--YDA-EGDIKIGGKNVNKYNRNSIR   92 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCC-EEEEEETTEEGGGBCHHHHH
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc--CCC-CeEEEECCEEhhhcCHHHHh
Confidence            4799999999997421 4699999999999999999999999999999999998  556 89999999998766554433


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc------c----cccccCCCCC
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT------D----FLNRNVNEGF  224 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~~L  224 (325)
                       ..++|+||++.+++ .|+.+++.+..         .....    +.+.+.++.+++..      +    ..++.+. +|
T Consensus        93 -~~i~~v~Q~~~l~~-~tv~enl~~~~---------~~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~-~L  156 (260)
T 2ghi_A           93 -SIIGIVPQDTILFN-ETIKYNILYGK---------LDATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGM-KL  156 (260)
T ss_dssp             -TTEEEECSSCCCCS-EEHHHHHHTTC---------TTCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSB-CC
T ss_pred             -ccEEEEcCCCcccc-cCHHHHHhccC---------CCCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcC-cC
Confidence             45899999998886 59988875421         01111    12334455555421      1    1223444 59


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      ||||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++.+ ++|||+||||++++. . ||++++|++|++++
T Consensus       157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~-~d~i~~l~~G~i~~  233 (260)
T 2ghi_A          157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-S-AESIILLNKGKIVE  233 (260)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-T-CSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-h-CCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999864 789999999999875 4 79999999999999


Q ss_pred             EcCccH
Q 020520          305 TGDASI  310 (325)
Q Consensus       305 ~g~~~~  310 (325)
                      .|+++.
T Consensus       234 ~g~~~~  239 (260)
T 2ghi_A          234 KGTHKD  239 (260)
T ss_dssp             EECHHH
T ss_pred             ECCHHH
Confidence            998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=5.8e-51  Score=369.34  Aligned_cols=212  Identities=21%  Similarity=0.307  Sum_probs=173.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...+ +.
T Consensus         1 ml~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~-~~   76 (243)
T 1mv5_A            1 MLSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITIDGQPIDNISLENW-RS   76 (243)
T ss_dssp             CEEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--SCCSBSCEEETTEESTTTSCSCC-TT
T ss_pred             CEEEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHH-Hh
Confidence            5899999999942 36799999999999999999999999999999999998  78999999999999876543222 23


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccccc-----------ccCCCCCC
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN-----------RNVNEGFS  225 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~~LS  225 (325)
                      .++|+||++.+++ .|+.+++.+...        .....    ..+.++++.+++. ++.+           +.+. +||
T Consensus        77 ~i~~v~q~~~l~~-~tv~enl~~~~~--------~~~~~----~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~-~LS  141 (243)
T 1mv5_A           77 QIGFVSQDSAIMA-GTIRENLTYGLE--------GDYTD----EDLWQVLDLAFAR-SFVENMPDQLNTEVGERGV-KIS  141 (243)
T ss_dssp             TCCEECCSSCCCC-EEHHHHTTSCTT--------SCSCH----HHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSB-CCC
T ss_pred             hEEEEcCCCcccc-ccHHHHHhhhcc--------CCCCH----HHHHHHHHHhChH-HHHHhCccchhchhccCcC-cCC
Confidence            4789999998877 488888754210        11111    2345566777764 3333           2333 599


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      |||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++. +|+|||+||||++.+. . ||++++|++|++++.
T Consensus       142 gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~-~d~v~~l~~G~i~~~  218 (243)
T 1mv5_A          142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-D-ADKIYFIEKGQITGS  218 (243)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-H-CSEEEEEETTEECCC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-h-CCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999987 5899999999999875 4 799999999999988


Q ss_pred             cCccH
Q 020520          306 GDASI  310 (325)
Q Consensus       306 g~~~~  310 (325)
                      |+++.
T Consensus       219 g~~~~  223 (243)
T 1mv5_A          219 GKHNE  223 (243)
T ss_dssp             SCHHH
T ss_pred             CCHHH
Confidence            87653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-49  Score=401.74  Aligned_cols=272  Identities=18%  Similarity=0.280  Sum_probs=208.6

Q ss_pred             ehhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCE
Q 020520           28 FTLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEV  107 (325)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~  107 (325)
                      +..|+..+......++....+.+|+.++++.+++..... ..........++++||+|+|++ ++++|+|+||+|++||+
T Consensus       306 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~  383 (598)
T 3qf4_B          306 FTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD-AVELREVRGEIEFKNVWFSYDK-KKPVLKDITFHIKPGQK  383 (598)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS-CCCCCSCCCCEEEEEEECCSSS-SSCSCCSEEEECCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCC-CCccccceEEEEcCCCE
Confidence            457777788888889999999999999887654432111 1111223446999999999974 46799999999999999


Q ss_pred             EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhh
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRK  187 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~  187 (325)
                      +||+||||||||||+|+|+|+  ++|++|+|.++|+++...+....++ .+++++|++.+|+. |+.+|+..+.      
T Consensus       384 ~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~-tv~eni~~~~------  453 (598)
T 3qf4_B          384 VALVGPTGSGKTTIVNLLMRF--YDVDRGQILVDGIDIRKIKRSSLRS-SIGIVLQDTILFST-TVKENLKYGN------  453 (598)
T ss_dssp             EEEECCTTSSTTHHHHHHTTS--SCCSEEEEEETTEEGGGSCHHHHHH-HEEEECTTCCCCSS-BHHHHHHSSS------
T ss_pred             EEEECCCCCcHHHHHHHHhcC--cCCCCeEEEECCEEhhhCCHHHHHh-ceEEEeCCCccccc-cHHHHHhcCC------
Confidence            999999999999999999998  7899999999999998887765543 58999999998864 8988875431      


Q ss_pred             cCCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH
Q 020520          188 LGQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDV  262 (325)
Q Consensus       188 ~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i  262 (325)
                         +....++..+.     +.+.++.+..+.+..-...+.+||||||||++|||||+++|++||||||||+||+.+++.+
T Consensus       454 ---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i  530 (598)
T 3qf4_B          454 ---PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI  530 (598)
T ss_dssp             ---TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence               11112221111     1222333321111111111235999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCe
Q 020520          263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY  319 (325)
Q Consensus       263 ~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~  319 (325)
                      .+.|+++. +|+|+|+||||++.+..  ||+|++|++|++++.|+++  ++++.++.
T Consensus       531 ~~~l~~~~-~~~t~i~itH~l~~~~~--~d~i~~l~~G~i~~~g~~~--~l~~~~~~  582 (598)
T 3qf4_B          531 QAAMWKLM-EGKTSIIIAHRLNTIKN--ADLIIVLRDGEIVEMGKHD--ELIQKRGF  582 (598)
T ss_dssp             HHHHHHHH-TTSEEEEESCCTTHHHH--CSEEEEECSSSEEECSCHH--HHHHTTCH
T ss_pred             HHHHHHHc-CCCEEEEEecCHHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCCH
Confidence            99999986 47899999999998864  6999999999999999875  45555553

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.5e-49  Score=361.40  Aligned_cols=208  Identities=18%  Similarity=0.230  Sum_probs=175.8

Q ss_pred             cEEEEEEEEEECCC--cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVIAES--KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~--~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ||+++||+++|++.  .+++|+++||+|+ ||+++|+||||||||||+|+|+|+  + |++|+|.++|+++...  ..  
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl--~-p~~G~I~~~g~~~~~~--~~--   72 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL--L-PYSGNIFINGMEVRKI--RN--   72 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS--S-CCEEEEEETTEEGGGC--SC--
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC--C-CCCcEEEECCEECcch--HH--
Confidence            58999999999631  1579999999999 999999999999999999999998  7 9999999999987543  11  


Q ss_pred             hccEE-EeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          155 LAGLF-MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       155 ~~~i~-~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      +..++ |+||++.+  .+|+.+++......    .   ...    .+++.++++.+++..+..++++.+ |||||||||+
T Consensus        73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~----~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~-LSgGqkqRv~  138 (263)
T 2pjz_A           73 YIRYSTNLPEAYEI--GVTVNDIVYLYEEL----K---GLD----RDLFLEMLKALKLGEEILRRKLYK-LSAGQSVLVR  138 (263)
T ss_dssp             CTTEEECCGGGSCT--TSBHHHHHHHHHHH----T---CCC----HHHHHHHHHHTTCCGGGGGSBGGG-SCHHHHHHHH
T ss_pred             hhheEEEeCCCCcc--CCcHHHHHHHhhhh----c---chH----HHHHHHHHHHcCCChhHhcCChhh-CCHHHHHHHH
Confidence            34588 99999876  78999988764321    1   111    234677889999952456777764 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCc-EEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT-FIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d-~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+.+|++|||||||+|||+.+++.+++.|+++.+   |||+||||++++..+ || ++++|++|++++.|+++.
T Consensus       139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~-~d~~i~~l~~G~i~~~g~~~~  212 (263)
T 2pjz_A          139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLY-KEYKAYFLVGNRLQGPISVSE  212 (263)
T ss_dssp             HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGC-TTSEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHh-cCceEEEEECCEEEEecCHHH
Confidence            99999999999999999999999999999999999864   999999999998876 69 999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-49  Score=381.83  Aligned_cols=213  Identities=15%  Similarity=0.193  Sum_probs=179.3

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ...|+++||+|+|+.+++.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++ ++|+|.++|+++...+...++
T Consensus        17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~-~~G~I~i~G~~i~~~~~~~~r   93 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--LN-TEGEIQIDGVSWDSITLEQWR   93 (390)
T ss_dssp             SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC--SE-EEEEEEESSCBTTSSCHHHHH
T ss_pred             CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC--CC-CCeEEEECCEECCcCChHHHh
Confidence            457999999999964457899999999999999999999999999999999998  55 899999999999888766543


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC----------CC
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE----------GF  224 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----------~L  224 (325)
                      + .++|+||++.+|+ .|+.+|+...        .  ...    .+++.++++.+++. ++.++.+.+          +|
T Consensus        94 r-~ig~v~Q~~~lf~-~tv~enl~~~--------~--~~~----~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~L  156 (390)
T 3gd7_A           94 K-AFGVIPQKVFIFS-GTFRKNLDPN--------A--AHS----DQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVL  156 (390)
T ss_dssp             H-TEEEESCCCCCCS-EEHHHHHCTT--------C--CSC----HHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTS
T ss_pred             C-CEEEEcCCcccCc-cCHHHHhhhc--------c--ccC----HHHHHHHHHHhCCH-HHHhhcccccccccccccccC
Confidence            3 4899999999887 5888876321        1  111    23456778888885 566666542          29


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      ||||||||+|||||+.+|++|||||||++||+..+..+++.|+++. .++|+|+||||++.+. . ||+|++|++|+|++
T Consensus       157 SGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~-~-aDri~vl~~G~i~~  233 (390)
T 3gd7_A          157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAML-E-CDQFLVIEENKVRQ  233 (390)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGT-T-CSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHH-h-CCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999874 4789999999987654 4 79999999999999


Q ss_pred             EcCccH
Q 020520          305 TGDASI  310 (325)
Q Consensus       305 ~g~~~~  310 (325)
                      .|+++.
T Consensus       234 ~g~~~e  239 (390)
T 3gd7_A          234 YDSILE  239 (390)
T ss_dssp             ESSHHH
T ss_pred             ECCHHH
Confidence            998753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=5.3e-50  Score=356.24  Aligned_cols=203  Identities=18%  Similarity=0.308  Sum_probs=170.0

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ..+|+++||+++|+  + ++|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++.    . + 
T Consensus         8 ~~~l~~~~ls~~y~--~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~----~-~-   76 (214)
T 1sgw_A            8 GSKLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--LKPLKGEIIYNGVPIT----K-V-   76 (214)
T ss_dssp             -CEEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGG----G-G-
T ss_pred             CceEEEEEEEEEeC--C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEhh----h-h-
Confidence            35899999999995  3 799999999999999999999999999999999998  6899999999999875    1 2 


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|+||++.+++.+|+.+++.+....    .+. ..   + ..++.++++.+++. +. ++.+. +|||||||||+|
T Consensus        77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~----~~~-~~---~-~~~~~~~l~~~gl~-~~-~~~~~-~LSgGqkqrv~l  144 (214)
T 1sgw_A           77 KGKIFFLPEEIIVPRKISVEDYLKAVASL----YGV-KV---N-KNEIMDALESVEVL-DL-KKKLG-ELSQGTIRRVQL  144 (214)
T ss_dssp             GGGEEEECSSCCCCTTSBHHHHHHHHHHH----TTC-CC---C-HHHHHHHHHHTTCC-CT-TSBGG-GSCHHHHHHHHH
T ss_pred             cCcEEEEeCCCcCCCCCCHHHHHHHHHHh----cCC-ch---H-HHHHHHHHHHcCCC-cC-CCChh-hCCHHHHHHHHH
Confidence            34589999999988889999998765321    111 11   1 24567789999996 44 66665 599999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEE
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRI  302 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~i  302 (325)
                      ||||+.+|++|||||||+|||+.+++.+++.|+++.++|+|||++|||++++..+ ||+++ +..|+|
T Consensus       145 araL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~-~d~v~-~~~~~~  210 (214)
T 1sgw_A          145 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDV-NENLH-KYSTKI  210 (214)
T ss_dssp             HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSE-EEEGG-GGBC--
T ss_pred             HHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEE-EeCCcc
Confidence            9999999999999999999999999999999999875688999999999998876 68875 556766

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=7e-49  Score=352.64  Aligned_cols=204  Identities=22%  Similarity=0.324  Sum_probs=161.4

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+|+++||+++|+++++++|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|             
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g-------------   69 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSG-------------   69 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEECS-------------
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CcCCccEEEECC-------------
Confidence            47999999999964346799999999999999999999999999999999998  789999999998             


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhcCCccc-cccccCCCCCChHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERLSMKTD-FLNRNVNEGFSGGER  229 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~~LSgGqr  229 (325)
                       .++|++|++.+++. |+.+++.+...       .   .......     .+.+.++.+....+ ..++... +||||||
T Consensus        70 -~i~~v~q~~~~~~~-tv~enl~~~~~-------~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~LSgGqk  136 (229)
T 2pze_A           70 -RISFCSQFSWIMPG-TIKENIIFGVS-------Y---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI-TLSGGQR  136 (229)
T ss_dssp             -CEEEECSSCCCCSB-CHHHHHHTTSC-------C---CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCT-TSCHHHH
T ss_pred             -EEEEEecCCcccCC-CHHHHhhccCC-------c---ChHHHHHHHHHhCcHHHHHhCcccccccccCCCC-cCCHHHH
Confidence             27899999988875 99988764310       0   0110000     11122233222111 1222333 5999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||+|||||+.+|++|||||||+|||+.+++.+++.+ .++. +++|||+||||++++. . ||++++|++|++++.|++
T Consensus       137 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~-~d~v~~l~~G~i~~~g~~  213 (229)
T 2pze_A          137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-K-ADKILILHEGSSYFYGTF  213 (229)
T ss_dssp             HHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-H-CSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-h-CCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999974 5664 4789999999999875 4 799999999999999976


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       214 ~~  215 (229)
T 2pze_A          214 SE  215 (229)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=2.8e-48  Score=350.50  Aligned_cols=205  Identities=22%  Similarity=0.292  Sum_probs=161.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      +|+++||+++|++.++++|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|              
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g--------------   66 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVAIKG--------------   66 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC--SEEEEEEEEECS--------------
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECC--------------
Confidence            6999999999964346799999999999999999999999999999999998  679999999998              


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcc----ccccccCCCCCChHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKT----DFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~LSgGqrQRv  232 (325)
                      .++|++|++.+ +..|+.+++.+...       ... ...+......+..+.++..+    ...++.+. +|||||||||
T Consensus        67 ~i~~v~Q~~~~-~~~tv~enl~~~~~-------~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~LSgGqkqRv  136 (237)
T 2cbz_A           67 SVAYVPQQAWI-QNDSLRENILFGCQ-------LEE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGV-NLSGGQKQRV  136 (237)
T ss_dssp             CEEEECSSCCC-CSEEHHHHHHTTSC-------CCT-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSB-CCCHHHHHHH
T ss_pred             EEEEEcCCCcC-CCcCHHHHhhCccc-------cCH-HHHHHHHHHHhhHHHHHhccccccccccCCCC-CCCHHHHHHH
Confidence            27899999864 56799988764311       000 11110001111122232211    12345554 5999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHH---hccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN---GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      +|||||+.+|++|||||||+|||+.+++.+++.|.   ++. +|+|||+||||++.+. . ||++++|++|++++.|+++
T Consensus       137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~  213 (237)
T 2cbz_A          137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-Q-VDVIIVMSGGKISEMGSYQ  213 (237)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-G-SSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-h-CCEEEEEeCCEEEEeCCHH
Confidence            99999999999999999999999999999999995   443 4789999999999875 5 6999999999999999875


Q ss_pred             H
Q 020520          310 I  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       214 ~  214 (237)
T 2cbz_A          214 E  214 (237)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=3.2e-48  Score=422.01  Aligned_cols=273  Identities=19%  Similarity=0.260  Sum_probs=208.2

Q ss_pred             hHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEE
Q 020520           32 ALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAI  110 (325)
Q Consensus        32 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~l  110 (325)
                      +..+......+.....+.+|+.++++.+++...........+....|+++||+|+|++. +.++|+|+||+|++||.+||
T Consensus      1031 l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A         1031 LGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp             TTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEE
Confidence            33444555677788888899988887665543332222222334579999999999743 35799999999999999999


Q ss_pred             EcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCC
Q 020520          111 MGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQ  190 (325)
Q Consensus       111 vG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (325)
                      ||+||||||||+++|.|+  ++|++|+|.+||.|+..++.+.++. .++++||+|.+|.+ |..+|+.++..       .
T Consensus      1111 VG~SGsGKSTL~~lL~rl--~~p~~G~I~iDG~di~~i~~~~lR~-~i~~V~Qdp~LF~g-TIreNI~~gld-------~ 1179 (1321)
T 4f4c_A         1111 VGPSGCGKSTVVALLERF--YDTLGGEIFIDGSEIKTLNPEHTRS-QIAIVSQEPTLFDC-SIAENIIYGLD-------P 1179 (1321)
T ss_dssp             ECSTTSSTTSHHHHHTTS--SCCSSSEEEETTEETTTBCHHHHHT-TEEEECSSCCCCSE-EHHHHHSSSSC-------T
T ss_pred             ECCCCChHHHHHHHHhcC--ccCCCCEEEECCEEhhhCCHHHHHh-heEEECCCCEeeCc-cHHHHHhccCC-------C
Confidence            999999999999999998  8899999999999999999887654 48999999999876 88888743311       1


Q ss_pred             CCCChHHHHHhH-----HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH
Q 020520          191 PEIGPIEFYAYL-----YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA  265 (325)
Q Consensus       191 ~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~  265 (325)
                      .+.++++.++.+     .+.++.+.-+.+..-..-+.+||||||||++|||||+++|+|||||||||+||+++++.|.+.
T Consensus      1180 ~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~ 1259 (1321)
T 4f4c_A         1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259 (1321)
T ss_dssp             TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHH
Confidence            223334333222     223333322211111222346999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          266 VNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       266 L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      |+++. +++|+|+|+|+++.+..  ||+|+||++|+|++.|+++  ++++++|.|
T Consensus      1260 l~~~~-~~~TvI~IAHRLsTi~~--aD~I~Vld~G~IvE~Gth~--eLl~~~g~y 1309 (1321)
T 4f4c_A         1260 LDRAR-EGRTCIVIAHRLNTVMN--ADCIAVVSNGTIIEKGTHT--QLMSEKGAY 1309 (1321)
T ss_dssp             HTTTS-SSSEEEEECSSSSTTTT--CSEEEEESSSSEEEEECHH--HHHHCC---
T ss_pred             HHHHc-CCCEEEEeccCHHHHHh--CCEEEEEECCEEEEECCHH--HHHhCCcHH
Confidence            99875 46899999999887765  6999999999999999765  677888854

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.5e-46  Score=408.99  Aligned_cols=274  Identities=20%  Similarity=0.266  Sum_probs=214.9

Q ss_pred             hhchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCC-CCCCCCcEEEEEEEEEECC-CcccceeeeEEEEeCCC
Q 020520           29 TLPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQ-DEKSQPLLQVTGLTAVIAE-SKQEILKGVNLLVNEGE  106 (325)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ls~~y~~-~~~~iL~~vsl~i~~Ge  106 (325)
                      ..|+..+......++.+..+..|+.++++..+.......... .......|+++||+|+|++ .++++|+|+||+|++||
T Consensus       366 ~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~  445 (1321)
T 4f4c_A          366 SMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ  445 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCc
Confidence            345555666667788889999999998876544332222111 1123346999999999974 34689999999999999


Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      .+||+||||||||||+++|.|+  ++|++|+|.+||.++..++...++. .++|++|+|.+|.+ |+.+|+.++      
T Consensus       446 ~vaivG~sGsGKSTll~ll~~~--~~~~~G~I~idG~~i~~~~~~~lr~-~i~~v~Q~~~Lf~~-TI~eNI~~g------  515 (1321)
T 4f4c_A          446 TVALVGSSGCGKSTIISLLLRY--YDVLKGKITIDGVDVRDINLEFLRK-NVAVVSQEPALFNC-TIEENISLG------  515 (1321)
T ss_dssp             EEEEEECSSSCHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHHH-HEEEECSSCCCCSE-EHHHHHHTT------
T ss_pred             EEEEEecCCCcHHHHHHHhccc--cccccCcccCCCccchhccHHHHhh-cccccCCcceeeCC-chhHHHhhh------
Confidence            9999999999999999999998  8899999999999999998877554 48999999998875 888887543      


Q ss_pred             hcCCCCCChHHHHHhH-----HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          187 KLGQPEIGPIEFYAYL-----YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                         .+..+.++..+.+     .+.++.+..+.+..-..-+.+||||||||++||||++++|+|||||||||+||+++++.
T Consensus       516 ---~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~  592 (1321)
T 4f4c_A          516 ---KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGI  592 (1321)
T ss_dssp             ---CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHH
T ss_pred             ---cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHH
Confidence               2333344333222     23455554433333333344699999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          262 VAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       262 i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +.+.|.++.+ |+|+|+|||++..+..  ||+|++|++|+|++.|+++  ++++.+|.|
T Consensus       593 i~~~l~~~~~-~~T~iiiaHrls~i~~--aD~Iivl~~G~ive~Gth~--eL~~~~g~y  646 (1321)
T 4f4c_A          593 VQQALDKAAK-GRTTIIIAHRLSTIRN--ADLIISCKNGQVVEVGDHR--ALMAQQGLY  646 (1321)
T ss_dssp             HHHHHHHHHT-TSEEEEECSCTTTTTT--CSEEEEEETTEEEEEECHH--HHHTTTCHH
T ss_pred             HHHHHHHHhC-CCEEEEEcccHHHHHh--CCEEEEeeCCeeeccCCHH--HHHHhhhHH
Confidence            9999999864 6899999999998765  7999999999999999764  566666643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.4e-45  Score=400.45  Aligned_cols=270  Identities=20%  Similarity=0.257  Sum_probs=204.7

Q ss_pred             chHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEE
Q 020520           31 PALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVH  108 (325)
Q Consensus        31 ~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~  108 (325)
                      |+..+......+..+..+..|+.++++.+++........ ........|+++||+|+|++. +.++|+|+||+|++||++
T Consensus       340 ~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~  419 (1284)
T 3g5u_A          340 SVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV  419 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEE
Confidence            344444455667777788888888776544322211111 111223469999999999753 357999999999999999


Q ss_pred             EEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhc
Q 020520          109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKL  188 (325)
Q Consensus       109 ~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~  188 (325)
                      ||+||||||||||+++|+|+  ++|++|+|.++|.++..++...++. .+++++|+|.+|+. |+.+|+.++..      
T Consensus       420 ~ivG~sGsGKSTl~~ll~g~--~~~~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~~l~~~-ti~eNi~~g~~------  489 (1284)
T 3g5u_A          420 ALVGNSGCGKSTTVQLMQRL--YDPLDGMVSIDGQDIRTINVRYLRE-IIGVVSQEPVLFAT-TIAENIRYGRE------  489 (1284)
T ss_dssp             EEECCSSSSHHHHHHHTTTS--SCCSEEEEEETTEEGGGSCHHHHHH-HEEEECSSCCCCSS-CHHHHHHHHCS------
T ss_pred             EEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEHHhCCHHHHHh-heEEEcCCCccCCc-cHHHHHhcCCC------
Confidence            99999999999999999998  7899999999999999888776543 48999999999876 99998866421      


Q ss_pred             CCCCCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH
Q 020520          189 GQPEIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVA  263 (325)
Q Consensus       189 ~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~  263 (325)
                         ....++..+.     +.+.++.++...+..-...+.+|||||||||+|||||+++|+|||||||||+||+++++.+.
T Consensus       490 ---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~  566 (1284)
T 3g5u_A          490 ---DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ  566 (1284)
T ss_dssp             ---SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence               1222222221     23345555433222222223469999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCC
Q 020520          264 KAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGG  318 (325)
Q Consensus       264 ~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~  318 (325)
                      +.|+++. +|+|+|+|||+++.+..  ||+|++|++|+|++.|+++  ++++.++
T Consensus       567 ~~l~~~~-~~~t~i~itH~l~~i~~--~d~i~vl~~G~i~~~g~~~--~l~~~~~  616 (1284)
T 3g5u_A          567 AALDKAR-EGRTTIVIAHRLSTVRN--ADVIAGFDGGVIVEQGNHD--ELMREKG  616 (1284)
T ss_dssp             HHHHHHH-TTSEEEEECSCHHHHTT--CSEEEECSSSCCCCEECHH--HHHHTTS
T ss_pred             HHHHHHc-CCCEEEEEecCHHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCC
Confidence            9998875 47899999999998865  6999999999999999865  4445444

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1.2e-45  Score=342.39  Aligned_cols=200  Identities=22%  Similarity=0.328  Sum_probs=146.6

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++||++.+    +.+|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|            
T Consensus        38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g------------   99 (290)
T 2bbs_A           38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSG------------   99 (290)
T ss_dssp             ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS--SCEEEEEEECCS------------
T ss_pred             CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECC------------
Confidence            4579999999853    4699999999999999999999999999999999998  789999999988            


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhcCCccc-cccccCCCCCChHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERLSMKTD-FLNRNVNEGFSGGE  228 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~~LSgGq  228 (325)
                        .++|+||++.+++. |+.+++. ...       .   .......     .+.+.++.+....+ ..++... +|||||
T Consensus       100 --~i~~v~Q~~~l~~~-tv~enl~-~~~-------~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~LSgGq  164 (290)
T 2bbs_A          100 --RISFCSQNSWIMPG-TIKENII-GVS-------Y---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI-TLSGGQ  164 (290)
T ss_dssp             --CEEEECSSCCCCSS-BHHHHHH-TTC-------C---CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----C-CCCHHH
T ss_pred             --EEEEEeCCCccCcc-cHHHHhh-Ccc-------c---chHHHHHHHHHhChHHHHHhccccccchhcCccC-cCCHHH
Confidence              27899999988875 9988875 310       0   0100000     11122333322111 1222233 599999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||+|||||+.+|++|||||||+|||+.+++.+++.+ +++. +|+|||+||||++++. . ||++++|++|++++.|+
T Consensus       165 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~-~d~i~~l~~G~i~~~g~  241 (290)
T 2bbs_A          165 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-K-ADKILILHEGSSYFYGT  241 (290)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-H-SSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-c-CCEEEEEECCeEEEeCC
Confidence            99999999999999999999999999999999999974 5554 4789999999999875 4 69999999999999998


Q ss_pred             ccH
Q 020520          308 ASI  310 (325)
Q Consensus       308 ~~~  310 (325)
                      ++.
T Consensus       242 ~~~  244 (290)
T 2bbs_A          242 FSE  244 (290)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=6.3e-45  Score=395.32  Aligned_cols=271  Identities=20%  Similarity=0.298  Sum_probs=201.4

Q ss_pred             hHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCC-CCCCCCCcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEE
Q 020520           34 PLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDG-QDEKSQPLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIM  111 (325)
Q Consensus        34 ~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lv  111 (325)
                      .+......+.....+..|+.++++..++........ ........++++||+++|++. +.++|+|+||+|++||++||+
T Consensus       986 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~iv 1065 (1284)
T 3g5u_A          986 QVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065 (1284)
T ss_dssp             HHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEE
Confidence            333444566777778888888877554432211111 111224569999999999742 246999999999999999999


Q ss_pred             cCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCC
Q 020520          112 GKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP  191 (325)
Q Consensus       112 G~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (325)
                      ||||||||||+++|+|+  ++|++|+|.++|+++...+....+ ..++++||++.+|. .|+.+|+..+..       ..
T Consensus      1066 G~sGsGKSTl~~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r-~~i~~v~Q~~~l~~-~ti~eNi~~~~~-------~~ 1134 (1284)
T 3g5u_A         1066 GSSGCGKSTVVQLLERF--YDPMAGSVFLDGKEIKQLNVQWLR-AQLGIVSQEPILFD-CSIAENIAYGDN-------SR 1134 (1284)
T ss_dssp             CSSSTTHHHHHHHHTTS--SCCSEEEEESSSSCTTSSCHHHHT-TSCEEEESSCCCCS-SBHHHHHTCCCS-------SC
T ss_pred             CCCCCCHHHHHHHHhcC--cCCCCCEEEECCEEcccCCHHHHH-hceEEECCCCcccc-ccHHHHHhccCC-------CC
Confidence            99999999999999998  789999999999999988876554 35899999998775 588888754210       11


Q ss_pred             CCChHHHHHh-----HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 020520          192 EIGPIEFYAY-----LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV  266 (325)
Q Consensus       192 ~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L  266 (325)
                      ....++..+.     +.+.++.+..+.+..-...+.+|||||||||+|||||+++|+||||||||+|||+.+++.+.+.|
T Consensus      1135 ~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l 1214 (1284)
T 3g5u_A         1135 VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214 (1284)
T ss_dssp             CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            1222222221     22233333222111111223469999999999999999999999999999999999999999999


Q ss_pred             HhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHHHHHhCCee
Q 020520          267 NGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGYK  320 (325)
Q Consensus       267 ~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~~~~~~~~~  320 (325)
                      +++. +|+|||+||||++.+..  ||+|++|++|+|++.|+++  ++++++|.|
T Consensus      1215 ~~~~-~~~tvi~isH~l~~i~~--~dri~vl~~G~i~~~g~~~--~l~~~~g~y 1263 (1284)
T 3g5u_A         1215 DKAR-EGRTCIVIAHRLSTIQN--ADLIVVIQNGKVKEHGTHQ--QLLAQKGIY 1263 (1284)
T ss_dssp             HHHS-SSSCEEEECSCTTGGGS--CSEEEEEETBEEEEEECHH--HHHHSCSHH
T ss_pred             HHhC-CCCEEEEEecCHHHHHc--CCEEEEEECCEEEEECCHH--HHHhCCCHH
Confidence            8864 57899999999998854  7999999999999999765  566777743

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=8.3e-42  Score=345.32  Aligned_cols=203  Identities=26%  Similarity=0.318  Sum_probs=171.3

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++|+++.|++   ..|+++||+|++||++||+||||||||||+|+|+|+  .+|++|+|.+.             
T Consensus       355 ~~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~-------------  416 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV--EEPTEGKVEWD-------------  416 (607)
T ss_dssp             CEEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--SCCSBSCCCCC-------------
T ss_pred             ceEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEEe-------------
Confidence            468999999999963   479999999999999999999999999999999998  68999999761             


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                       ..++|+||++..++..++.+++.......   .        .....+.++++.+++. +..++.+.+ |||||||||+|
T Consensus       417 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~---~--------~~~~~~~~~l~~~~l~-~~~~~~~~~-LSGGe~QRv~i  482 (607)
T 3bk7_A          417 -LTVAYKPQYIKAEYEGTVYELLSKIDSSK---L--------NSNFYKTELLKPLGII-DLYDRNVED-LSGGELQRVAI  482 (607)
T ss_dssp             -CCEEEECSSCCCCCSSBHHHHHHHHHHHH---H--------HCHHHHHHTHHHHTCT-TTTTSBGGG-CCHHHHHHHHH
T ss_pred             -eEEEEEecCccCCCCCcHHHHHHhhhccC---C--------CHHHHHHHHHHHcCCc-hHhcCChhh-CCHHHHHHHHH
Confidence             24889999987777788877664431110   0        0013456778899996 677888765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+.++..++++|+++. +.|.|||+||||++++..+ ||++++|++  |+++..|+++.
T Consensus       483 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~-adrv~vl~~~~g~~~~~g~p~~  560 (607)
T 3bk7_A          483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV-SDRLIVFEGEPGRHGRALPPMG  560 (607)
T ss_dssp             HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEcCCcceEEecCCHHH
Confidence            999999999999999999999999999999999986 4588999999999999988 699999986  88888898863

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=7.3e-42  Score=341.87  Aligned_cols=203  Identities=26%  Similarity=0.318  Sum_probs=170.7

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++++++|+++.|++   ..|+++||+|++||++||+||||||||||+|+|+|+  .+|++|+|.+.             
T Consensus       285 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~i~~~-------------  346 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV--EEPTEGKIEWD-------------  346 (538)
T ss_dssp             CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--SCCSBCCCCCC-------------
T ss_pred             CeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEEC-------------
Confidence            468999999999963   469999999999999999999999999999999998  68999999751             


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                       ..++|++|++...+..++.+++.......   ..     .   ...+.++++.+++. +..++.+.+ |||||||||+|
T Consensus       347 -~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~---~~-----~---~~~~~~~l~~~~l~-~~~~~~~~~-LSGGe~qrv~l  412 (538)
T 1yqt_A          347 -LTVAYKPQYIKADYEGTVYELLSKIDASK---LN-----S---NFYKTELLKPLGII-DLYDREVNE-LSGGELQRVAI  412 (538)
T ss_dssp             -CCEEEECSSCCCCCSSBHHHHHHHHHHHH---HT-----C---HHHHHHTTTTTTCG-GGTTSBGGG-CCHHHHHHHHH
T ss_pred             -ceEEEEecCCcCCCCCcHHHHHHhhhccC---CC-----H---HHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHH
Confidence             24889999987767778877654321110   10     0   13456778899996 567788765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~~g~~~~  310 (325)
                      ||||+.+|++|||||||+|||+.+++.++++|+++.+ .|.|||+||||++++..+ ||+|++|++  |+++..|+++.
T Consensus       413 AraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~-~drv~vl~~~~~~~~~~g~~~~  490 (538)
T 1yqt_A          413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV-SDRLMVFEGEPGKYGRALPPMG  490 (538)
T ss_dssp             HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-CSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEeCCcceEeecCCHHH
Confidence            9999999999999999999999999999999999864 488999999999999988 699999986  78888898863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.3e-41  Score=337.85  Aligned_cols=205  Identities=26%  Similarity=0.282  Sum_probs=167.9

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      ..+.++++|+++.|++   ..|+++||+|++||++||+||||||||||+|+|+|+  .+|++|+|.+++.          
T Consensus       266 ~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~----------  330 (538)
T 3ozx_A          266 LKTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE--ITADEGSVTPEKQ----------  330 (538)
T ss_dssp             CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSBCCEESSCC----------
T ss_pred             ccceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCe----------
Confidence            3458999999999964   468888999999999999999999999999999998  6899999987653          


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                         .+++++|+.......++.+++.....      ..... .   ...+.++++.+++. +..++.+.+ |||||||||+
T Consensus       331 ---~i~~~~q~~~~~~~~tv~~~l~~~~~------~~~~~-~---~~~~~~~l~~~~l~-~~~~~~~~~-LSGGq~QRv~  395 (538)
T 3ozx_A          331 ---ILSYKPQRIFPNYDGTVQQYLENASK------DALST-S---SWFFEEVTKRLNLH-RLLESNVND-LSGGELQKLY  395 (538)
T ss_dssp             ---CEEEECSSCCCCCSSBHHHHHHHHCS------STTCT-T---SHHHHHTTTTTTGG-GCTTSBGGG-CCHHHHHHHH
T ss_pred             ---eeEeechhcccccCCCHHHHHHHhhh------hccch-h---HHHHHHHHHHcCCH-HHhcCChhh-CCHHHHHHHH
Confidence               36788998766556788887654210      00000 1   12356678889986 567888765 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEEEcCcc
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIKTGDAS  309 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~~g~~~  309 (325)
                      |||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+ ||+|++|++  |.+...+++.
T Consensus       396 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~-aDri~vl~~~~~~~~~~~~~~  473 (538)
T 3ozx_A          396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI-ADRIIVFKGEPEKAGLATSPV  473 (538)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEEEETTTEEEECCCE
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEeCCcceeccCCChH
Confidence            99999999999999999999999999999999999974 488999999999999988 699999986  5555555543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=5.6e-41  Score=339.27  Aligned_cols=202  Identities=21%  Similarity=0.301  Sum_probs=157.5

Q ss_pred             CcEEE--------EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE---------
Q 020520           76 PLLQV--------TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV---------  138 (325)
Q Consensus        76 ~~l~~--------~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I---------  138 (325)
                      .+|++        +||+++|++ ...+|+++| +|++||++||+||||||||||+|+|+|+  ++|++|++         
T Consensus        82 ~~i~i~~l~~~~~~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl--l~p~~G~~~~~~~~~~~  157 (607)
T 3bk7_A           82 NAISIVNLPEQLDEDCVHRYGV-NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ--LIPNLCEDNDSWDNVIR  157 (607)
T ss_dssp             CCCEEEEECTTGGGSEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS--SCCCTTTTCCCHHHHHH
T ss_pred             ceEEEecCCccccCCeEEEECC-CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC--CCCCCCccccccchhhh
Confidence            46888        899999964 225899999 9999999999999999999999999998  67999985         


Q ss_pred             EECCEeCCCCCHHH-HhhccEEEeccCCccCCC---cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccc
Q 020520          139 VFKGENLLEMEPEE-RSLAGLFMSFQSPVEIPG---VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTD  214 (325)
Q Consensus       139 ~~~g~~i~~~~~~~-~~~~~i~~~~Q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  214 (325)
                      .++|.++....... .....+++++|....++.   .++.+++..         ...       .+++.++++.+++. +
T Consensus       158 ~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~---------~~~-------~~~~~~~L~~lgL~-~  220 (607)
T 3bk7_A          158 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK---------VDE-------VGKFEEVVKELELE-N  220 (607)
T ss_dssp             HTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH---------TCC-------SSCHHHHHHHTTCT-T
T ss_pred             eeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh---------hHH-------HHHHHHHHHHcCCC-c
Confidence            34554332110011 112346677776433221   255555421         000       12356778999996 5


Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEE
Q 020520          215 FLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFI  294 (325)
Q Consensus       215 ~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i  294 (325)
                      ..++.+.+ |||||||||+|||||+.+|++|||||||++||+.++..++++|+++.++|.|||+||||++++..+ ||+|
T Consensus       221 ~~~~~~~~-LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~-adri  298 (607)
T 3bk7_A          221 VLDRELHQ-LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYL-SDVI  298 (607)
T ss_dssp             GGGSBGGG-CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEE
T ss_pred             hhCCChhh-CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhh-CCEE
Confidence            67888865 999999999999999999999999999999999999999999999976789999999999999887 6999


Q ss_pred             EEEeCC
Q 020520          295 HIMEDG  300 (325)
Q Consensus       295 ~vl~~G  300 (325)
                      ++|+++
T Consensus       299 ~vl~~~  304 (607)
T 3bk7_A          299 HVVYGE  304 (607)
T ss_dssp             EEEESC
T ss_pred             EEECCC
Confidence            999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=5.1e-40  Score=344.00  Aligned_cols=211  Identities=20%  Similarity=0.299  Sum_probs=156.4

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .++|+++|++++|++.++++|+|+||+|++||++||+||||||||||+|+|+|+  ++|++|+|.++|..          
T Consensus       669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl--l~P~sG~I~~~~~~----------  736 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE--LLPTSGEVYTHENC----------  736 (986)
T ss_dssp             SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS--SCCSEEEEEECTTC----------
T ss_pred             CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEEcCcc----------
Confidence            468999999999974346799999999999999999999999999999999998  68999999998620          


Q ss_pred             hccEEEeccCCcc----CCCcchHHHHHHHHH------------------------------------------------
Q 020520          155 LAGLFMSFQSPVE----IPGVNNIDFLHMAYN------------------------------------------------  182 (325)
Q Consensus       155 ~~~i~~~~Q~~~~----~~~~~~~~~~~~~~~------------------------------------------------  182 (325)
                        .++|++|++..    ....+..+++...+.                                                
T Consensus       737 --~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~  814 (986)
T 2iw3_A          737 --RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT  814 (986)
T ss_dssp             --CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred             --ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence              13444443210    000111111111000                                                


Q ss_pred             ----------------------------------------------HH---hhhcCCCCCChHHHHHhHHHHHHhcCCcc
Q 020520          183 ----------------------------------------------AR---RRKLGQPEIGPIEFYAYLYPKLERLSMKT  213 (325)
Q Consensus       183 ----------------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  213 (325)
                                                                    ..   ....+...   .....++.+.++.+|+..
T Consensus       815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~---~~~~~~i~~~Le~lGL~~  891 (986)
T 2iw3_A          815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFR---PLTRKEIEEHCSMLGLDP  891 (986)
T ss_dssp             EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHHTTCCH
T ss_pred             chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccc---hhHHHHHHHHHHHcCCCc
Confidence                                                          00   00000000   001235677899999964


Q ss_pred             cc-ccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCc
Q 020520          214 DF-LNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT  292 (325)
Q Consensus       214 ~~-~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d  292 (325)
                      +. .++.+. +|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++   +.|||+||||++++..+ ||
T Consensus       892 ~~~~~~~~~-~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l-~D  966 (986)
T 2iw3_A          892 EIVSHSRIR-GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNL-TE  966 (986)
T ss_dssp             HHHHHSCGG-GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTT-CC
T ss_pred             hhhcCCCcc-ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHh-CC
Confidence            33 466665 49999999999999999999999999999999999999999999876   46999999999999887 69


Q ss_pred             EEEEEeCCEEEEEcC
Q 020520          293 FIHIMEDGRIIKTGD  307 (325)
Q Consensus       293 ~i~vl~~G~iv~~g~  307 (325)
                      ++++|++|+++..|+
T Consensus       967 rVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          967 EVWAVKDGRMTPSGH  981 (986)
T ss_dssp             EEECCBTTBCCC---
T ss_pred             EEEEEECCEEEEeCC
Confidence            999999999987775

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=7.3e-41  Score=334.67  Aligned_cols=200  Identities=25%  Similarity=0.323  Sum_probs=153.1

Q ss_pred             EEE-EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE---------EECCEeCCC
Q 020520           78 LQV-TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV---------VFKGENLLE  147 (325)
Q Consensus        78 l~~-~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I---------~~~g~~i~~  147 (325)
                      .++ +||+++|++ ...+|+++| +|++||++||+||||||||||+|+|+|+  ++|++|++         .++|.++..
T Consensus        21 ~~~~~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl--~~p~~G~~~~~~~~~~~~~~g~~~~~   96 (538)
T 1yqt_A           21 EQLEEDCVHRYGV-NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ--LIPNLCGDNDSWDGVIRAFRGNELQN   96 (538)
T ss_dssp             ---CCCEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS--SCCCTTTTCCSHHHHHHHTTTSTHHH
T ss_pred             hhHhcCcEEEECC-ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCccCcchhhhHHhhCCccHHH
Confidence            344 699999964 225899999 9999999999999999999999999998  67999985         345543321


Q ss_pred             CCHHH-HhhccEEEeccCCccCCC---cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020520          148 MEPEE-RSLAGLFMSFQSPVEIPG---VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG  223 (325)
Q Consensus       148 ~~~~~-~~~~~i~~~~Q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  223 (325)
                      ..... .....+++++|....++.   .++.+++..      .  ..        .+++.++++.+++. +..++.+.+ 
T Consensus        97 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~------~--~~--------~~~~~~~l~~lgl~-~~~~~~~~~-  158 (538)
T 1yqt_A           97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK------A--DE--------TGKLEEVVKALELE-NVLEREIQH-  158 (538)
T ss_dssp             HHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH------H--CS--------SSCHHHHHHHTTCT-TTTTSBGGG-
T ss_pred             HHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh------h--hH--------HHHHHHHHHHcCCC-hhhhCChhh-
Confidence            10011 112356777887543332   144444321      0  00        12356788999996 567777765 


Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      |||||||||+|||||+.+|++|||||||++||+.+++++++.|++++++|.|||+||||++++..+ ||+|++|++|
T Consensus       159 LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~-~dri~vl~~~  234 (538)
T 1yqt_A          159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYL-SDIIHVVYGE  234 (538)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEcCc
Confidence            999999999999999999999999999999999999999999999976789999999999999887 6999999754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-40  Score=330.00  Aligned_cols=199  Identities=21%  Similarity=0.272  Sum_probs=161.9

Q ss_pred             EEEEEEECCCcccceeeeEEEEeCC-----CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           81 TGLTAVIAESKQEILKGVNLLVNEG-----EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        81 ~~ls~~y~~~~~~iL~~vsl~i~~G-----e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ++++++|++ .+.+++++||++.+|     |++||+||||||||||+|+|+|+  .+|++|+.      +.        .
T Consensus       350 ~~~~~~y~~-~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl--~~p~~G~~------~~--------~  412 (608)
T 3j16_B          350 ASRAFSYPS-LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA--LKPDEGQD------IP--------K  412 (608)
T ss_dssp             SSSCCEECC-EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS--SCCSBCCC------CC--------S
T ss_pred             cceeEEecC-cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC--CCCCCCcC------cc--------C
Confidence            667888864 346899999999999     88999999999999999999998  67999962      11        1


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      .++++++|+.......++.+++....      ... .. .   ...+.++++.+++. +..++.+.+ |||||||||+||
T Consensus       413 ~~i~~~~q~~~~~~~~tv~e~~~~~~------~~~-~~-~---~~~~~~~l~~l~l~-~~~~~~~~~-LSGGqkQRv~iA  479 (608)
T 3j16_B          413 LNVSMKPQKIAPKFPGTVRQLFFKKI------RGQ-FL-N---PQFQTDVVKPLRID-DIIDQEVQH-LSGGELQRVAIV  479 (608)
T ss_dssp             CCEEEECSSCCCCCCSBHHHHHHHHC------SST-TT-S---HHHHHHTHHHHTST-TTSSSBSSS-CCHHHHHHHHHH
T ss_pred             CcEEEecccccccCCccHHHHHHHHh------hcc-cc-c---HHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHHH
Confidence            35889999876555567776543211      011 01 1   12345678889986 577888875 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC--CEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED--GRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~--G~iv~~g~~~~  310 (325)
                      |||+.+|+||||||||+|||+.++..++++|+++.+ .|.|||+||||++++..+ ||||++|++  |+++..|+++.
T Consensus       480 raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~-aDrvivl~~~~g~~~~~g~p~~  556 (608)
T 3j16_B          480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL-ADKVIVFEGIPSKNAHARAPES  556 (608)
T ss_dssp             HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-CSEEEECEEETTTEEECCCCEE
T ss_pred             HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEeCCCCeEEecCChHH
Confidence            999999999999999999999999999999999864 589999999999999988 699999986  89999998863

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=5.3e-38  Score=328.81  Aligned_cols=197  Identities=19%  Similarity=0.232  Sum_probs=160.0

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ..+...|++++|++  +.+|+|+||+|++|++++|+||||||||||+|+|+|        |+|  +|.+...       .
T Consensus       434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~-------~  494 (986)
T 2iw3_A          434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE-------E  494 (986)
T ss_dssp             CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT-------T
T ss_pred             ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc-------c
Confidence            35777799999964  679999999999999999999999999999999996        222  3332211       1


Q ss_pred             ccEEEeccCC-ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          156 AGLFMSFQSP-VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       156 ~~i~~~~Q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ..+++++|++ .+++.+++.+++..    .  ..+   .     ..++.+.++.+|+..+..++.+.+ |||||||||+|
T Consensus       495 ~~~~~v~q~~~~~~~~ltv~e~l~~----~--~~~---~-----~~~v~~~L~~lgL~~~~~~~~~~~-LSGGqkQRvaL  559 (986)
T 2iw3_A          495 CRTVYVEHDIDGTHSDTSVLDFVFE----S--GVG---T-----KEAIKDKLIEFGFTDEMIAMPISA-LSGGWKMKLAL  559 (986)
T ss_dssp             SCEEETTCCCCCCCTTSBHHHHHHT----T--CSS---C-----HHHHHHHHHHTTCCHHHHHSBGGG-CCHHHHHHHHH
T ss_pred             eeEEEEcccccccccCCcHHHHHHH----h--hcC---H-----HHHHHHHHHHcCCChhhhcCCccc-CCHHHHHHHHH
Confidence            2367888875 56677888887643    0  011   1     345677899999954567777765 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE-EEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRII-KTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv-~~g~~~~  310 (325)
                      ||||+.+|+||||||||+|||+.+++++.++|++   .|.|||+||||++++..+ ||++++|++|+++ +.|+.+.
T Consensus       560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~-adrii~L~~G~iv~~~G~~~e  632 (986)
T 2iw3_A          560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNV-CEYIINYEGLKLRKYKGNFTE  632 (986)
T ss_dssp             HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHH-CSEEEEEETTEEEEEESCHHH
T ss_pred             HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHh-CCEEEEEECCeeecCCCCHHH
Confidence            9999999999999999999999999999999998   478999999999999888 6999999999997 5787653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=5.9e-39  Score=328.95  Aligned_cols=208  Identities=16%  Similarity=0.188  Sum_probs=135.2

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHH---------------------HHHhCCCCCCCC-------ccEEEECCE
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLS---------------------KVLVGHPDYEVT-------EGSVVFKGE  143 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl---------------------~~l~Gl~~~~p~-------~G~I~~~g~  143 (325)
                      +.+|+||||+|++||++||+||||||||||+                     +++.|+  ..|+       .|.|.++|.
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l--~~~~~~~i~~~~~~i~~~~~  108 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQM--EKPDVDAIEGLSPAISIDQK  108 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC----------------CCCSEEESCCCEEEESSC
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccc--ccCCccceeccccceEecCc
Confidence            5699999999999999999999999999998                     778886  4566       455666665


Q ss_pred             eCCCCCHHHHhhccEEEeccCC-------------------ccCCCcchHHHHHHHHHHHhhhcCCC--CCChHHHHHhH
Q 020520          144 NLLEMEPEERSLAGLFMSFQSP-------------------VEIPGVNNIDFLHMAYNARRRKLGQP--EIGPIEFYAYL  202 (325)
Q Consensus       144 ~i~~~~~~~~~~~~i~~~~Q~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  202 (325)
                      +.....     ...+++++|.+                   ..++.+++.+++..............  .....+..+ .
T Consensus       109 ~~~~~~-----~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  182 (670)
T 3ux8_A          109 TTSRNP-----RSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRD-R  182 (670)
T ss_dssp             C----------CCBHHHHTTCC-------------------------CC--------------------------CHH-H
T ss_pred             hhhccc-----hhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHH-H
Confidence            443211     11222333332                   22344566666544211100000000  000001111 2


Q ss_pred             HHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 020520          203 YPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT  280 (325)
Q Consensus       203 ~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivt  280 (325)
                      .+.++.+++....+++.+.+ |||||||||+|||||+.+|+  +|||||||+|||+.++.+++++|++++++|.|||+||
T Consensus       183 ~~~l~~~gL~~~~~~~~~~~-LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt  261 (670)
T 3ux8_A          183 LGFLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE  261 (670)
T ss_dssp             HHHHHHTTCTTCCTTCBGGG-SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHcCCchhhhcCCccc-CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            24588899864446777765 99999999999999999998  9999999999999999999999999987789999999


Q ss_pred             CChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          281 HYRRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       281 Hd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      ||++++. . ||+|++|      ++|++++.|+++.
T Consensus       262 Hd~~~~~-~-~d~ii~l~~g~~~~~G~i~~~g~~~~  295 (670)
T 3ux8_A          262 HDEDTML-A-ADYLIDIGPGAGIHGGEVVAAGTPEE  295 (670)
T ss_dssp             CCHHHHH-H-CSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred             CCHHHHh-h-CCEEEEecccccccCCEEEEecCHHH
Confidence            9999775 4 7999999      8999999998753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=9.5e-38  Score=319.99  Aligned_cols=107  Identities=22%  Similarity=0.347  Sum_probs=93.7

Q ss_pred             hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC---EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEE
Q 020520          201 YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD---LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLL  277 (325)
Q Consensus       201 ~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~---lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvI  277 (325)
                      +..+.++.+++.....++.+. +|||||||||+|||||+.+|+   ||||||||+|||+.++..++++|++++++|.|||
T Consensus       522 ~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi  600 (670)
T 3ux8_A          522 RKLETLYDVGLGYMKLGQPAT-TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL  600 (670)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGG-GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHcCCchhhccCCch-hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            445678888886444566666 499999999999999999874   9999999999999999999999999987789999


Q ss_pred             EEeCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          278 MITHYRRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       278 ivtHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      +||||++++. . ||+|++|      ++|+|++.|+++.
T Consensus       601 ~vtHd~~~~~-~-~d~i~~l~~~~g~~~G~i~~~g~~~~  637 (670)
T 3ux8_A          601 VIEHNLDVIK-T-ADYIIDLGPEGGDRGGQIVAVGTPEE  637 (670)
T ss_dssp             EECCCHHHHT-T-CSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred             EEeCCHHHHH-h-CCEEEEecCCcCCCCCEEEEecCHHH
Confidence            9999999874 4 7999999      8999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-38  Score=316.92  Aligned_cols=206  Identities=24%  Similarity=0.314  Sum_probs=146.7

Q ss_pred             CcEEEEE--------EEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE--------
Q 020520           76 PLLQVTG--------LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV--------  139 (325)
Q Consensus        76 ~~l~~~~--------ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~--------  139 (325)
                      ..|++.|        ++++|+. ....|++++ .+++||++||+||||||||||+|+|+|+  ++|++|+|.        
T Consensus        68 ~~i~i~nl~~~~~~~~~~~Y~~-~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gl--l~P~~G~i~~~~~~~~~  143 (608)
T 3j16_B           68 DAIQIINLPTNLEAHVTHRYSA-NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGK--QKPNLGRFDDPPEWQEI  143 (608)
T ss_dssp             CCEEEEEESSSSSTTEEEECST-TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS--SCCCTTTTCCSSCHHHH
T ss_pred             cceEEecCChhhcCCeEEEECC-CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcC--CCCCCceEecccchhhh
Confidence            3566655        5788864 234677777 6899999999999999999999999998  689999873        


Q ss_pred             ---ECCEeCCCCCHHHHh-hccEEEeccCCccCC------CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc
Q 020520          140 ---FKGENLLEMEPEERS-LAGLFMSFQSPVEIP------GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL  209 (325)
Q Consensus       140 ---~~g~~i~~~~~~~~~-~~~i~~~~Q~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (325)
                         +.|.++......... .....+.+|....++      ..++.+++.    .   .  ..     ....++.++++.+
T Consensus       144 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~----~---~--~~-----~~~~~~~~~l~~~  209 (608)
T 3j16_B          144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK----L---R--ME-----KSPEDVKRYIKIL  209 (608)
T ss_dssp             HHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH----H---H--CC-----SCHHHHHHHHHHH
T ss_pred             hheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHh----h---h--hh-----hHHHHHHHHHHHc
Confidence               222211100000000 111122222211100      001111110    0   0  00     0123567789999


Q ss_pred             CCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhh
Q 020520          210 SMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI  289 (325)
Q Consensus       210 ~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~  289 (325)
                      ++. +..++.+.+ |||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++|.|||+||||++++..+
T Consensus       210 gl~-~~~~~~~~~-LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~  287 (608)
T 3j16_B          210 QLE-NVLKRDIEK-LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYL  287 (608)
T ss_dssp             TCT-GGGGSCTTT-CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHH
T ss_pred             CCc-chhCCChHH-CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            996 577888875 999999999999999999999999999999999999999999999988889999999999999988


Q ss_pred             CCcEEEEEeCCEE
Q 020520          290 KPTFIHIMEDGRI  302 (325)
Q Consensus       290 ~~d~i~vl~~G~i  302 (325)
                       +|+|++|++|..
T Consensus       288 -~drv~vl~~~~~  299 (608)
T 3j16_B          288 -SDFVCIIYGVPS  299 (608)
T ss_dssp             -CSEEEEEESCTT
T ss_pred             -CCEEEEEeCCcc
Confidence             699999987654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=5.6e-37  Score=306.22  Aligned_cols=196  Identities=23%  Similarity=0.278  Sum_probs=144.5

Q ss_pred             EEEEEEECCCcccceeeeEEEE-eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE-----------EECCEeCCCC
Q 020520           81 TGLTAVIAESKQEILKGVNLLV-NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV-----------VFKGENLLEM  148 (325)
Q Consensus        81 ~~ls~~y~~~~~~iL~~vsl~i-~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I-----------~~~g~~i~~~  148 (325)
                      ++.+.+|+.+   -++-..|.+ ++||++||+||||||||||+|+|+|+  ++|++|+|           .++|+++...
T Consensus         3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl--~~p~~G~i~~~~~~~~~~~~~~g~~i~~~   77 (538)
T 3ozx_A            3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE--IIPNFGDPNSKVGKDEVLKRFRGKEIYNY   77 (538)
T ss_dssp             CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTS--SCCCTTCTTSCCCHHHHHHHHTTSTTHHH
T ss_pred             CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCccccccchhhHHhhcCCeeHHHH
Confidence            3567889753   344445554 58999999999999999999999998  78999998           5666654321


Q ss_pred             CHHH-HhhccEEEeccCCccCC---CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020520          149 EPEE-RSLAGLFMSFQSPVEIP---GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF  224 (325)
Q Consensus       149 ~~~~-~~~~~i~~~~Q~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  224 (325)
                      .... .....+....|.....+   ..++.+++..      .  ..        ..++.++++.+++. ...++.+.+ |
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~------~--~~--------~~~~~~~l~~l~l~-~~~~~~~~~-L  139 (538)
T 3ozx_A           78 FKELYSNELKIVHKIQYVEYASKFLKGTVNEILTK------I--DE--------RGKKDEVKELLNMT-NLWNKDANI-L  139 (538)
T ss_dssp             HHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHH------H--CC--------SSCHHHHHHHTTCG-GGTTSBGGG-C
T ss_pred             HHHHhhcccchhhccchhhhhhhhccCcHHHHhhc------c--hh--------HHHHHHHHHHcCCc-hhhcCChhh-C
Confidence            1111 11223444444432211   1233332210      0  00        12355678899996 567888765 9


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                      ||||||||+|||||+.+|++|||||||++||+.++.++.++|+++.+ |+|||+||||++++..+ ||+|++|++|.
T Consensus       140 SgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~-~d~i~vl~~~~  214 (538)
T 3ozx_A          140 SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYL-TDLIHIIYGES  214 (538)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHH-CSEEEEEEEET
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhh-CCEEEEecCCc
Confidence            99999999999999999999999999999999999999999999976 89999999999999887 69999998653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=2.1e-34  Score=298.80  Aligned_cols=222  Identities=18%  Similarity=0.252  Sum_probs=155.5

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHH-HhCCCC-----C----------------
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKV-LVGHPD-----Y----------------  131 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~-l~Gl~~-----~----------------  131 (325)
                      ..+.|+++|+++       .+|+||||+|++||++||+|+||||||||+++ |+|+..     .                
T Consensus       499 ~~~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~  571 (842)
T 2vf7_A          499 PAGWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTA  571 (842)
T ss_dssp             CSCEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------
T ss_pred             CCceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc
Confidence            356899999974       26999999999999999999999999999996 765310     1                


Q ss_pred             --CCCcc-------EEEECCEeCCCCCH----------HH-H---------hhcc--------------------EEEec
Q 020520          132 --EVTEG-------SVVFKGENLLEMEP----------EE-R---------SLAG--------------------LFMSF  162 (325)
Q Consensus       132 --~p~~G-------~I~~~g~~i~~~~~----------~~-~---------~~~~--------------------i~~~~  162 (325)
                        .+.+|       .|.++|.++...+.          .. +         +..+                    .+++.
T Consensus       572 ~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~  651 (842)
T 2vf7_A          572 GSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVM  651 (842)
T ss_dssp             CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEE
T ss_pred             ccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccc
Confidence              12466       68899887753221          00 0         0000                    00110


Q ss_pred             cCCccC------------------------CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccc
Q 020520          163 QSPVEI------------------------PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNR  218 (325)
Q Consensus       163 Q~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  218 (325)
                      .+..++                        ...+..+++.+........+..    .. ...++.++++.+++....+++
T Consensus       652 ~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~----~~-~~~~~~~~L~~~gL~~~~l~~  726 (842)
T 2vf7_A          652 VELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD----ES-AIFRALDTLREVGLGYLRLGQ  726 (842)
T ss_dssp             ETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT----SH-HHHHHHHHHHHTTCTTSBTTC
T ss_pred             hhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc----ch-HHHHHHHHHHHcCCCcccccC
Confidence            000111                        1223333322111000000100    01 123567789999997434566


Q ss_pred             cCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEE
Q 020520          219 NVNEGFSGGERKRNEILQLAVLG---ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH  295 (325)
Q Consensus       219 ~~~~~LSgGqrQRv~iAraL~~~---p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~  295 (325)
                      .+. +|||||||||+|||+|+.+   |+||||||||+|||+..++.++++|++++++|.|||+||||++++ .. ||+|+
T Consensus       727 ~~~-~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~-aDrii  803 (842)
T 2vf7_A          727 PAT-ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AA-SDWVL  803 (842)
T ss_dssp             CGG-GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TT-CSEEE
T ss_pred             Ccc-cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-Hh-CCEEE
Confidence            665 4999999999999999996   799999999999999999999999999987799999999999999 55 79999


Q ss_pred             EE------eCCEEEEEcCccH
Q 020520          296 IM------EDGRIIKTGDASI  310 (325)
Q Consensus       296 vl------~~G~iv~~g~~~~  310 (325)
                      +|      ++|+|++.|+++.
T Consensus       804 ~L~p~~g~~~G~Iv~~g~~~e  824 (842)
T 2vf7_A          804 DIGPGAGEDGGRLVAQGTPAE  824 (842)
T ss_dssp             EECSSSGGGCCSEEEEECHHH
T ss_pred             EECCCCCCCCCEEEEEcCHHH
Confidence            99      7999999998763

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=3.4e-34  Score=299.54  Aligned_cols=108  Identities=23%  Similarity=0.322  Sum_probs=95.2

Q ss_pred             HhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEE
Q 020520          200 AYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSL  276 (325)
Q Consensus       200 ~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv  276 (325)
                      .+..+.++.+|+....+++.+. +|||||||||+|||||+++|   +||||||||+|||+.+++.+++.|++++++|.||
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~-~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV  861 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPAT-TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV  861 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCST-TCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCchhhccCCcc-CCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence            3456788999997544566665 49999999999999999876   7999999999999999999999999998778999


Q ss_pred             EEEeCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          277 LMITHYRRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       277 IivtHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      |+||||++++..  ||+|++|      ++|+|++.|+++.
T Consensus       862 IvI~HdL~~i~~--ADrIivLgp~gg~~~G~Iv~~Gtpee  899 (916)
T 3pih_A          862 IVIEHNLDVIKN--ADHIIDLGPEGGKEGGYIVATGTPEE  899 (916)
T ss_dssp             EEECCCHHHHTT--CSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred             EEEeCCHHHHHh--CCEEEEecCCCCCCCCEEEEEcCHHH
Confidence            999999998864  7999999      8999999998864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=5e-33  Score=268.94  Aligned_cols=210  Identities=22%  Similarity=0.260  Sum_probs=143.0

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC------------------------------------CCCcc
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY------------------------------------EVTEG  136 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~------------------------------------~p~~G  136 (325)
                      .++++++|++.+| +++|+||||||||||+++|.++...                                    .+..|
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~  127 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence            4799999999999 9999999999999999999776311                                    24578


Q ss_pred             EEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcc--hHHHHHHHHH---------------HH--hhhcCCCCCC---
Q 020520          137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN--NIDFLHMAYN---------------AR--RRKLGQPEIG---  194 (325)
Q Consensus       137 ~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~--~~~~~~~~~~---------------~~--~~~~~~~~~~---  194 (325)
                      ++.++|+++............+.+++|+..++....  ...++.....               ..  ..........   
T Consensus       128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~  207 (415)
T 4aby_A          128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP  207 (415)
T ss_dssp             EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence            899999998643334444445788899876543211  1111111000               00  0000000000   


Q ss_pred             ------------------------------hHHHHHhHHHHHHhcCCcccc----------------------cc-----
Q 020520          195 ------------------------------PIEFYAYLYPKLERLSMKTDF----------------------LN-----  217 (325)
Q Consensus       195 ------------------------------~~~~~~~~~~~l~~~~l~~~~----------------------~~-----  217 (325)
                                                    .......+.+.++.+++....                      ..     
T Consensus       208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  287 (415)
T 4aby_A          208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE  287 (415)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence                                          000112233445555543100                      00     


Q ss_pred             --ccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020520          218 --RNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF  293 (325)
Q Consensus       218 --~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~  293 (325)
                        +++..-|||||||||+||++|+.+|  ++|||||||+|||+.+++.+.+.|+++. +|.|||+||||++++. . ||+
T Consensus       288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~-~-~d~  364 (415)
T 4aby_A          288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAA-R-AHH  364 (415)
T ss_dssp             CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHT-T-CSE
T ss_pred             cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHh-h-cCe
Confidence              1111116999999999999999999  9999999999999999999999999997 5789999999998875 4 799


Q ss_pred             EEEE----eCCEEEEEc
Q 020520          294 IHIM----EDGRIIKTG  306 (325)
Q Consensus       294 i~vl----~~G~iv~~g  306 (325)
                      +++|    ++|+++...
T Consensus       365 i~~l~k~~~~G~~~~~~  381 (415)
T 4aby_A          365 HYKVEKQVEDGRTVSHV  381 (415)
T ss_dssp             EEEEEEEEETTEEEEEE
T ss_pred             EEEEEEeccCCceEEEE
Confidence            9999    999987654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=2e-33  Score=292.54  Aligned_cols=221  Identities=22%  Similarity=0.252  Sum_probs=151.3

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh-CCC-----CCCCCc-------c-----
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV-GHP-----DYEVTE-------G-----  136 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~-Gl~-----~~~p~~-------G-----  136 (325)
                      .+.|+++|++.       .+|+||||+|++||++||+|+||||||||+++|+ |..     ...+..       |     
T Consensus       627 ~~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~  699 (972)
T 2r6f_A          627 GRWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD  699 (972)
T ss_dssp             SCEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCS
T ss_pred             ceEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccc
Confidence            36799999862       3699999999999999999999999999999864 210     001122       3     


Q ss_pred             -EEEECCEeCCCCC---HH--------HHh-------hccEEEeccCCccC-----------------------------
Q 020520          137 -SVVFKGENLLEME---PE--------ERS-------LAGLFMSFQSPVEI-----------------------------  168 (325)
Q Consensus       137 -~I~~~g~~i~~~~---~~--------~~~-------~~~i~~~~Q~~~~~-----------------------------  168 (325)
                       .|.++|.++...+   +.        .+.       ....+|++|.+.+.                             
T Consensus       700 ~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~c  779 (972)
T 2r6f_A          700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPC  779 (972)
T ss_dssp             EEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEEC
T ss_pred             eEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccc
Confidence             4788887764221   10        000       00123444432110                             


Q ss_pred             -----------------CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          169 -----------------PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       169 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                                       ...+..+++.+........+.  ..  .. ..+..+.++.+++....+++.+. +||||||||
T Consensus       780 e~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~--~~-~~~~~~~L~~~gL~~~~l~~~~~-~LSGGekQR  853 (972)
T 2r6f_A          780 EVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SI--PK-IKRKLETLYDVGLGYMKLGQPAT-TLSGGEAQR  853 (972)
T ss_dssp             TTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SC--HH-HHHHHHHHHHTTCSSSBTTCCGG-GCCHHHHHH
T ss_pred             cccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cc--hh-HHHHHHHHHHcCCCcccccCchh-hCCHHHHHH
Confidence                             011111111100000000000  00  11 12345788999997435677776 499999999


Q ss_pred             HHHHHHHHhCC---CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE------eCCEE
Q 020520          232 NEILQLAVLGA---DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM------EDGRI  302 (325)
Q Consensus       232 v~iAraL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl------~~G~i  302 (325)
                      |+||++|+.+|   +||||||||+|||+.+++.++++|+++.++|.|||+||||++++. . ||+|++|      ++|+|
T Consensus       854 v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~-aDrIivL~p~gG~~~G~I  931 (972)
T 2r6f_A          854 VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-T-ADYIIDLGPEGGDRGGQI  931 (972)
T ss_dssp             HHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T-CSEEEEECSSSTTSCCSE
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h-CCEEEEEcCCCCCCCCEE
Confidence            99999999875   999999999999999999999999999877899999999999874 4 7999999      78999


Q ss_pred             EEEcCccH
Q 020520          303 IKTGDASI  310 (325)
Q Consensus       303 v~~g~~~~  310 (325)
                      ++.|+++.
T Consensus       932 v~~g~~~e  939 (972)
T 2r6f_A          932 VAVGTPEE  939 (972)
T ss_dssp             EEEESHHH
T ss_pred             EEecCHHH
Confidence            99998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.3e-36  Score=295.32  Aligned_cols=197  Identities=12%  Similarity=0.084  Sum_probs=149.9

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-E-EEECCEeCCCCCHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-S-VVFKGENLLEMEPE  151 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~-I~~~g~~i~~~~~~  151 (325)
                      ..++++++||+++|+        ++||++++|++++|+||||||||||+|+|+|+  +.|++| + |.++|. .      
T Consensus       115 ~~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl--~~p~~G~~pI~vdg~-~------  177 (460)
T 2npi_A          115 NHTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY--ALKFNAYQPLYINLD-P------  177 (460)
T ss_dssp             CCTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT--THHHHCCCCEEEECC-T------
T ss_pred             Ccchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc--ccccCCceeEEEcCC-c------
Confidence            356899999998883        69999999999999999999999999999998  678999 9 999982 1      


Q ss_pred             HHhhccEEEeccCCccC---CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH
Q 020520          152 ERSLAGLFMSFQSPVEI---PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE  228 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq  228 (325)
                         +.+++++||+..++   +.+++.+++ +....   ..+...      ..++.++++.+|+. +..+  +. +|||||
T Consensus       178 ---~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~---~~~~~~------~~~~~~ll~~~gl~-~~~~--~~-~LSgGq  240 (460)
T 2npi_A          178 ---QQPIFTVPGCISATPISDILDAQLPT-WGQSL---TSGATL------LHNKQPMVKNFGLE-RINE--NK-DLYLEC  240 (460)
T ss_dssp             ---TSCSSSCSSCCEEEECCSCCCTTCTT-CSCBC---BSSCCS------SCCBCCEECCCCSS-SGGG--CH-HHHHHH
T ss_pred             ---cCCeeeeccchhhcccccccchhhhh-ccccc---ccCcch------HHHHHHHHHHhCCC-cccc--hh-hhhHHH
Confidence               23467889987533   334555544 21100   001000      01223456777875 3333  33 599999


Q ss_pred             HHHHHHHHH--HHhCCCE----EEEeC-cCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh------HHhhhCCcE--
Q 020520          229 RKRNEILQL--AVLGADL----AILDE-IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR------LLEFIKPTF--  293 (325)
Q Consensus       229 rQRv~iAra--L~~~p~l----LlLDE-PtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~------~~~~~~~d~--  293 (325)
                      ||||+||||  |+.+|++    ||||| ||++||+. .+.+.++++++   +.|+|+||||.+      ++..+ +|+  
T Consensus       241 ~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~-~dr~~  315 (460)
T 2npi_A          241 ISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTF-GPELG  315 (460)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHH-HHHHC
T ss_pred             HHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHh-ccccc
Confidence            999999999  9999999    99999 99999999 77777777665   578999999988      66676 698  


Q ss_pred             ---EEEEe-CCEEEEEcCccH
Q 020520          294 ---IHIME-DGRIIKTGDASI  310 (325)
Q Consensus       294 ---i~vl~-~G~iv~~g~~~~  310 (325)
                         |++|+ +|+++ .|+++.
T Consensus       316 ~~~vi~l~k~G~iv-~g~~~~  335 (460)
T 2npi_A          316 NNNIFFIPKLDGVS-AVDDVY  335 (460)
T ss_dssp             GGGEEEECCCTTCC-CCCHHH
T ss_pred             CCEEEEEeCCCcEE-ECCHHH
Confidence               99999 99999 887653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.96  E-value=3.2e-29  Score=239.34  Aligned_cols=85  Identities=25%  Similarity=0.251  Sum_probs=76.3

Q ss_pred             cccCCCCCChHHHHHHHHHHHHH------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC
Q 020520          217 NRNVNEGFSGGERKRNEILQLAV------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK  290 (325)
Q Consensus       217 ~~~~~~~LSgGqrQRv~iAraL~------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~  290 (325)
                      ++.+. +|||||||||+|||||+      .+|++|||||||+|||+.+++.+++.|+++.++|.|||+||||++++ .. 
T Consensus       274 ~~~~~-~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~-  350 (365)
T 3qf7_A          274 ERPAR-GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EA-  350 (365)
T ss_dssp             EEEGG-GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TT-
T ss_pred             CCCch-hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-Hh-
Confidence            34554 49999999999999999      69999999999999999999999999999987789999999999984 44 


Q ss_pred             CcEEEEEeCCEEEE
Q 020520          291 PTFIHIMEDGRIIK  304 (325)
Q Consensus       291 ~d~i~vl~~G~iv~  304 (325)
                      +|++++|++|++++
T Consensus       351 ~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          351 FDRKLRITGGVVVN  364 (365)
T ss_dssp             CSCEEEEETTEEC-
T ss_pred             CCEEEEEECCEEEe
Confidence            69999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.96  E-value=1.4e-30  Score=222.95  Aligned_cols=149  Identities=14%  Similarity=0.108  Sum_probs=102.3

Q ss_pred             eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHH
Q 020520           97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDF  176 (325)
Q Consensus        97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~  176 (325)
                      |+||+|++||+++|+||||||||||+|++.+        |...+.        ....+    ++++|++...   .... 
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~--------~d~~~----g~~~~~~~~~---~~~~-   56 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVIS--------SDFCR----GLMSDDENDQ---TVTG-   56 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEE--------HHHHH----HHHCSSTTCG---GGHH-
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEc--------cHHHH----HHhcCcccch---hhHH-
Confidence            6899999999999999999999999999654        111121        11111    2446665311   0000 


Q ss_pred             HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020520          177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV  256 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~  256 (325)
                        ..+.              .... ........+.. ...+. .. ..|||||||++||||++.+|++|+|||||++||+
T Consensus        57 --~~~~--------------~~~~-~~~~~~~~g~~-~~~~~-~~-~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~  116 (171)
T 4gp7_A           57 --AAFD--------------VLHY-IVSKRLQLGKL-TVVDA-TN-VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQE  116 (171)
T ss_dssp             --HHHH--------------HHHH-HHHHHHHTTCC-EEEES-CC-CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHH
T ss_pred             --HHHH--------------HHHH-HHHHHHhCCCe-EEEEC-CC-CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHH
Confidence              0000              0000 11112233442 22232 22 3799999999999999999999999999999999


Q ss_pred             H----------------HHHHHHHHHHhccCCCcEEEEEeCChhHHhhh
Q 020520          257 D----------------ALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI  289 (325)
Q Consensus       257 ~----------------~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~  289 (325)
                      .                ..+.+.+.|++++++|.|+|+||||++++..+
T Consensus       117 ~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A          117 RNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred             HHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence            9                66889999988876799999999999988764

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=2.7e-28  Score=229.02  Aligned_cols=82  Identities=21%  Similarity=0.289  Sum_probs=69.5

Q ss_pred             cccCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCc
Q 020520          217 NRNVNEGFSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPT  292 (325)
Q Consensus       217 ~~~~~~~LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d  292 (325)
                      +..+. .||||||||++||+||+    .+|++|||||||++||+..++.+.+.|+++. ++.|||++||+.+.. .. ||
T Consensus       214 ~~~~~-~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~-~~-~d  289 (322)
T 1e69_A          214 DQKLS-LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVM-EA-AD  289 (322)
T ss_dssp             CCBGG-GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGG-GG-CS
T ss_pred             cCchh-hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHH-hh-Cc
Confidence            34444 59999999999999997    5789999999999999999999999999984 478999999997654 44 68


Q ss_pred             EE--EEEeCCEE
Q 020520          293 FI--HIMEDGRI  302 (325)
Q Consensus       293 ~i--~vl~~G~i  302 (325)
                      ++  ++|.+|..
T Consensus       290 ~~~~v~~~~g~s  301 (322)
T 1e69_A          290 LLHGVTMVNGVS  301 (322)
T ss_dssp             EEEEEEESSSCE
T ss_pred             eEEEEEEeCCEE
Confidence            76  77888864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.95  E-value=3e-31  Score=234.46  Aligned_cols=150  Identities=14%  Similarity=0.083  Sum_probs=98.2

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      +.+|+++    ++||+++|+||||||||||+++|+|+   +|++|+|..  .++.. +.... +..++|+||++.     
T Consensus        13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl---~p~~G~I~~--~~~~~-~~~~~-~~~ig~v~q~~~-----   76 (208)
T 3b85_A           13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ---ALQSKQVSR--IILTR-PAVEA-GEKLGFLPGTLN-----   76 (208)
T ss_dssp             HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH---HHHTTSCSE--EEEEE-CSCCT-TCCCCSSCC--------
T ss_pred             HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC---CCcCCeeee--EEecC-Cchhh-hcceEEecCCHH-----
Confidence            5689986    89999999999999999999999996   578999843  22221 11111 235788899861     


Q ss_pred             chHHHH-HHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCc
Q 020520          172 NNIDFL-HMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI  250 (325)
Q Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEP  250 (325)
                         +++ ...............  .    ..+.++++. +             |  ||||||+|||||+.+|++||||||
T Consensus        77 ---enl~~~~~~~~~~~~~~~~--~----~~~~~~l~~-g-------------l--Gq~qrv~lAraL~~~p~lllLDEP  131 (208)
T 3b85_A           77 ---EKIDPYLRPLHDALRDMVE--P----EVIPKLMEA-G-------------I--VEVAPLAYMRGRTLNDAFVILDEA  131 (208)
T ss_dssp             ------CTTTHHHHHHHTTTSC--T----THHHHHHHT-T-------------S--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred             ---HHHHHHHHHHHHHHHHhcc--H----HHHHHHHHh-C-------------C--chHHHHHHHHHHhcCCCEEEEeCC
Confidence               111 000000000000000  0    123333332 1             3  999999999999999999999999


Q ss_pred             CcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020520          251 DSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF  288 (325)
Q Consensus       251 tsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~  288 (325)
                      |++    +++.++++|+++ ++|+||| ||||++++..
T Consensus       132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             GGC----CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred             ccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence            999    899999999998 6688999 9999876653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.93  E-value=8.3e-32  Score=250.56  Aligned_cols=208  Identities=13%  Similarity=0.063  Sum_probs=143.2

Q ss_pred             hchHhHhhhhhhhhhhhccHHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEE
Q 020520           30 LPALPLLCRRSNYHRHHLSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHA  109 (325)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~  109 (325)
                      .++..+......++++..+..|+.+++..+.......  ........+|+++||+|+|+   .++|+++||+|++|++++
T Consensus        56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~va  130 (305)
T 2v9p_A           56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GSWKSILTFFNYQNIELITF---INALKLWLKGIPKKNCLA  130 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CcccccCCeEEEEEEEEEcC---hhhhccceEEecCCCEEE
Confidence            5566666777788888888999888876432211110  00001112589999999995   479999999999999999


Q ss_pred             EEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHH-HHHHHHHHHhhhc
Q 020520          110 IMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNID-FLHMAYNARRRKL  188 (325)
Q Consensus       110 lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~  188 (325)
                      |+||||||||||+++|+|+  +   +|+|..                   +++|++.++.. +..+ ++.+.        
T Consensus       131 IvGpsGsGKSTLl~lL~gl--~---~G~I~~-------------------~v~q~~~lf~~-ti~~~ni~~~--------  177 (305)
T 2v9p_A          131 FIGPPNTGKSMLCNSLIHF--L---GGSVLS-------------------FANHKSHFWLA-SLADTRAALV--------  177 (305)
T ss_dssp             EECSSSSSHHHHHHHHHHH--H---TCEEEC-------------------GGGTTSGGGGG-GGTTCSCEEE--------
T ss_pred             EECCCCCcHHHHHHHHhhh--c---CceEEE-------------------EecCccccccc-cHHHHhhccC--------
Confidence            9999999999999999997  4   798842                   34566655442 2221 21110        


Q ss_pred             CCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHh
Q 020520          189 GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG  268 (325)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~  268 (325)
                        .....     .+.+.++.+ +. +.++   +..||||||||   ||||+.+|+|||    |++||+.+++.+..    
T Consensus       178 --~~~~~-----~~~~~i~~~-L~-~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----  234 (305)
T 2v9p_A          178 --DDATH-----ACWRYFDTY-LR-NALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----  234 (305)
T ss_dssp             --EEECH-----HHHHHHHHT-TT-GGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----
T ss_pred             --ccccH-----HHHHHHHHH-hH-ccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----
Confidence              00111     233445543 22 2233   34599999999   999999999999    99999999988752    


Q ss_pred             ccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020520          269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA  311 (325)
Q Consensus       269 l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~  311 (325)
                                +||++..+. . +|+| +|++|++++.|+++..
T Consensus       235 ----------ltH~~~~~~-~-aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          235 ----------LHSRVQTFR-F-EQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             ----------GTTTEEEEE-C-CCCC-CCC---CCCCCCHHHH
T ss_pred             ----------HhCCHHHHH-h-CCEE-EEeCCEEEEeCCHHHH
Confidence                      289887664 3 7999 9999999999987643

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.93  E-value=3.3e-27  Score=203.59  Aligned_cols=148  Identities=16%  Similarity=0.089  Sum_probs=100.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      +++|+||||||||||+++|+|+  +.     |.++|.+......... ...+++++|++.   ..   +++   +    .
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~--l~-----i~~~g~~~~~~~~~~~-~~~ig~~~~~~~---~~---~~~---~----~   60 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER--LG-----KRAIGFWTEEVRDPET-KKRTGFRIITTE---GK---KKI---F----S   60 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH--HG-----GGEEEEEEEEEC-------CCEEEEEETT---CC---EEE---E----E
T ss_pred             EEEEECCCCCCHHHHHHHHHHH--hC-----CcCCCEEhhhhccccc-cceeEEEeecCc---HH---HHH---H----H
Confidence            6899999999999999999997  31     4455554322211011 123677788751   11   000   0    0


Q ss_pred             hcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH-----HHhCCCEEEEeC--cCcCCCHHHH
Q 020520          187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL-----AVLGADLAILDE--IDSGLDVDAL  259 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra-----L~~~p~lLlLDE--PtsgLD~~~~  259 (325)
                      ....                   . .....++.+. .||||||||++||||     |+.+|++|||||  ||++||+..+
T Consensus        61 ~~~~-------------------~-~~~~~~~~~~-~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~  119 (178)
T 1ye8_A           61 SKFF-------------------T-SKKLVGSYGV-NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFR  119 (178)
T ss_dssp             ETTC-------------------C-CSSEETTEEE-CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHH
T ss_pred             hhcC-------------------C-cccccccccc-CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHH
Confidence            0000                   0 0013344444 499999999999996     999999999999  9999999999


Q ss_pred             HHHHHHHHhccCCCcEEEEEeC---ChhHHhhhCCcEEEEEeCCEEEE
Q 020520          260 RDVAKAVNGLLTPKNSLLMITH---YRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       260 ~~i~~~L~~l~~~g~tvIivtH---d~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      +.+.+.+.+   .+.|+|++||   |.+++..++ ++    .+|++++
T Consensus       120 ~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~-~r----~~~~i~~  159 (178)
T 1ye8_A          120 DLVRQIMHD---PNVNVVATIPIRDVHPLVKEIR-RL----PGAVLIE  159 (178)
T ss_dssp             HHHHHHHTC---TTSEEEEECCSSCCSHHHHHHH-TC----TTCEEEE
T ss_pred             HHHHHHHhc---CCCeEEEEEccCCCchHHHHHH-hc----CCcEEEE
Confidence            999999875   3667888885   888888874 54    4566654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.93  E-value=3.9e-29  Score=241.55  Aligned_cols=169  Identities=19%  Similarity=0.201  Sum_probs=128.7

Q ss_pred             ccceeeeEEEEeCCC--------------------EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH
Q 020520           92 QEILKGVNLLVNEGE--------------------VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge--------------------~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~  151 (325)
                      +.+|+++||+|++|+                    ++||+||||||||||+|+|+|+  .+|++|+|.++|.++..    
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl--~~p~~GsI~~~g~~~t~----  109 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI--GNEEEGAAKTGVVEVTM----  109 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC--CTTSTTSCCCCC----C----
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC--CCccCceEEECCeecce----
Confidence            468999999999999                    9999999999999999999998  67999999999876521    


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH--HH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG--ER  229 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG--qr  229 (325)
                          .  ++++|++ .++.+++.++.....         ..       ..+.++++.+++. +. +..+ . ||||  |+
T Consensus       110 ----~--~~v~q~~-~~~~ltv~D~~g~~~---------~~-------~~~~~~L~~~~L~-~~-~~~~-~-lS~G~~~k  162 (413)
T 1tq4_A          110 ----E--RHPYKHP-NIPNVVFWDLPGIGS---------TN-------FPPDTYLEKMKFY-EY-DFFI-I-ISATRFKK  162 (413)
T ss_dssp             ----C--CEEEECS-SCTTEEEEECCCGGG---------SS-------CCHHHHHHHTTGG-GC-SEEE-E-EESSCCCH
T ss_pred             ----e--EEecccc-ccCCeeehHhhcccc---------hH-------HHHHHHHHHcCCC-cc-CCeE-E-eCCCCccH
Confidence                1  3467775 355556554432110         00       1355678888875 22 2333 3 9999  99


Q ss_pred             HHHHHHHHHHh----------CCCEEEEeCcCcCCCHHHHHHHHHHHHhcc-----CC----CcEEEEEeCChhH--Hhh
Q 020520          230 KRNEILQLAVL----------GADLAILDEIDSGLDVDALRDVAKAVNGLL-----TP----KNSLLMITHYRRL--LEF  288 (325)
Q Consensus       230 QRv~iAraL~~----------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-----~~----g~tvIivtHd~~~--~~~  288 (325)
                      ||++||+||+.          +|++++|||||+|||+.+++++++.|+++.     +.    ..+|+++||+++.  +..
T Consensus       163 qrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~  242 (413)
T 1tq4_A          163 NDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV  242 (413)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHH
Confidence            99999999999          999999999999999999999999999874     22    3578899998876  666


Q ss_pred             hCCcEE
Q 020520          289 IKPTFI  294 (325)
Q Consensus       289 ~~~d~i  294 (325)
                      + +|++
T Consensus       243 L-~d~I  247 (413)
T 1tq4_A          243 L-MDKL  247 (413)
T ss_dssp             H-HHHH
T ss_pred             H-HHHH
Confidence            6 3655

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.92  E-value=2.4e-29  Score=221.40  Aligned_cols=181  Identities=12%  Similarity=0.047  Sum_probs=107.0

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      .++++|  .+|++||+++|+||||||||||+|+|+|+  ++    .|.+++.... ..+....+.+++|+||++..|+.+
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl--~~----~i~~~~~~~~-~~~~~~~~~~i~~~~q~~~~~~~~   79 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRER--IP----NLHFSVSATT-RAPRPGEVDGVDYHFIDPTRFQQL   79 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHH--ST----TCEECCCEES-SCCCTTCCBTTTBEECCHHHHHHH
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhh--CC----ceEEcccccc-cCCcccccCCCeeEecCHHHHHHH
Confidence            467888  79999999999999999999999999997  32    2444432211 111111124567888987655433


Q ss_pred             chHHHHHHHHHHHh--hhcCCCCCChHHHHHhHHHH------HHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC
Q 020520          172 NNIDFLHMAYNARR--RKLGQPEIGPIEFYAYLYPK------LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD  243 (325)
Q Consensus       172 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~  243 (325)
                      ++.+++........  ..++   ....+..+++.+.      ++.+++. +..++.+. .||           ||+.+|+
T Consensus        80 ~~~~~l~~~~~~~~n~~~~g---~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~lS-----------~l~~~p~  143 (207)
T 1znw_A           80 IDQGELLEWAEIHGGLHRSG---TLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPE-AVT-----------VFLAPPS  143 (207)
T ss_dssp             HHTTCEEEEEEEGGGTEEEE---EEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTT-SEE-----------EEEECSC
T ss_pred             HhcCCceeehhhcCchhhcC---CcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCC-cEE-----------EEEECCC
Confidence            33222100000000  0001   1112222333332      3333332 23344443 366           8899999


Q ss_pred             EEEEeCcCcCC----CHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          244 LAILDEIDSGL----DVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       244 lLlLDEPtsgL----D~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      +++|||||+++    |+..++++.++++++.+ .|.|+|+||||++++..+ ||+|++|.
T Consensus       144 ~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~-~d~i~~l~  202 (207)
T 1znw_A          144 WQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAE-LVSLLVGT  202 (207)
T ss_dssp             HHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHH-HHHHHC--
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHH-HHHHHHhc
Confidence            99999999998    78899999999999864 488999999999999988 69998874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.92  E-value=3.9e-27  Score=219.31  Aligned_cols=178  Identities=13%  Similarity=0.089  Sum_probs=129.3

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH----HHH-hhccEEEeccCCc-cC
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP----EER-SLAGLFMSFQSPV-EI  168 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~----~~~-~~~~i~~~~Q~~~-~~  168 (325)
                      +.++||++++|++++|+||||||||||+++|+|+  +.|++|+|.++|.++.....    ..+ .+.++++++|++. .+
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~  167 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK  167 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence            4678999999999999999999999999999997  67889999999988755321    111 2346888999987 77


Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEE
Q 020520          169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAI  246 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLl  246 (325)
                      +..++.+++.....     .+. +          ..+++.+|+. +..++.+. +||   |||++|||||+.+|+  +|+
T Consensus       168 ~~~~v~e~l~~~~~-----~~~-d----------~~lldt~gl~-~~~~~~~~-eLS---kqr~~iaral~~~P~e~lLv  226 (302)
T 3b9q_A          168 AATVLSKAVKRGKE-----EGY-D----------VVLCDTSGRL-HTNYSLME-ELI---ACKKAVGKIVSGAPNEILLV  226 (302)
T ss_dssp             HHHHHHHHHHHHHH-----TTC-S----------EEEECCCCCS-SCCHHHHH-HHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHHH-----cCC-c----------chHHhcCCCC-cchhHHHH-HHH---HHHHHHHHhhccCCCeeEEE
Confidence            77777777654321     000 0          0124556664 33445554 499   999999999999999  999


Q ss_pred             EeCcCcCCCHHHHHHHHHHHHhcc-CCCcEEEEEeC---------ChhHHhhhCCcEEEEEeCCEEE
Q 020520          247 LDEIDSGLDVDALRDVAKAVNGLL-TPKNSLLMITH---------YRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       247 LDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvIivtH---------d~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      || ||+|||+..+.      +++. +.|.|+|++||         .++.+... ...|.++..|+.+
T Consensus       227 LD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~-~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          227 LD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEEL-GIPVKFIGVGEAV  285 (302)
T ss_dssp             EE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHH-CCCEEEEECSSSG
T ss_pred             Ee-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHH-CCCEEEEeCCCCh
Confidence            99 99999998552      3333 24789999999         44455554 4678888888754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.91  E-value=2.4e-27  Score=231.22  Aligned_cols=193  Identities=12%  Similarity=0.134  Sum_probs=142.8

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE---eCCCCC--
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE---NLLEME--  149 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~---~i~~~~--  149 (325)
                      .++++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+  .+|+.|.|.++|+   ++..+.  
T Consensus       129 ~~~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~--~~~~~G~i~~~G~r~~ev~~~~~~  204 (438)
T 2dpy_A          129 FNPLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY--TRADVIVVGLIGERGREVKDFIEN  204 (438)
T ss_dssp             CCTTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH--SCCSEEEEEEESCCHHHHHHHHHT
T ss_pred             CCceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc--cCCCeEEEEEeceecHHHHHHHHh
Confidence            357999999999963 36799999 99999999999999999999999999998  6789999999997   443211  


Q ss_pred             --HHHHhhccEEEeccC-CccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc-cccccccCCCCCC
Q 020520          150 --PEERSLAGLFMSFQS-PVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK-TDFLNRNVNEGFS  225 (325)
Q Consensus       150 --~~~~~~~~i~~~~Q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LS  225 (325)
                        ........+++++|+ ...++.+++.+++........                      ..+.. ..+++. +. .||
T Consensus       205 ~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~----------------------~~~~~v~~~ld~-l~-~lS  260 (438)
T 2dpy_A          205 ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR----------------------DRGQHVLLIMDS-LT-RYA  260 (438)
T ss_dssp             TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH----------------------TTTCEEEEEEEC-HH-HHH
T ss_pred             hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH----------------------hCCCCHHHHHHh-HH-HHH
Confidence              011122457888985 333444455444433211100                      00000 012222 22 499


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC---C-Cc-----EEEEEeCChhHHhhhCCcEEEE
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT---P-KN-----SLLMITHYRRLLEFIKPTFIHI  296 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tvIivtHd~~~~~~~~~d~i~v  296 (325)
                      +|| |||+||   +.+|++      |+|||+.....+.+++.++.+   + |.     ||+++|||++  ..+ +|++++
T Consensus       261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~i-ad~v~~  327 (438)
T 2dpy_A          261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPI-ADSARA  327 (438)
T ss_dssp             HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHH-HHHHHH
T ss_pred             HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chh-hceEEE
Confidence            999 999999   889998      999999999999999999876   3 64     9999999998  445 689999


Q ss_pred             EeCCEEEEEcCc
Q 020520          297 MEDGRIIKTGDA  308 (325)
Q Consensus       297 l~~G~iv~~g~~  308 (325)
                      |.+|+|+.++++
T Consensus       328 l~dG~Ivl~~~~  339 (438)
T 2dpy_A          328 ILDGHIVLSRRL  339 (438)
T ss_dssp             HSSEEEEECHHH
T ss_pred             EeCcEEEEeCCH
Confidence            999999988764

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.90  E-value=2.6e-23  Score=197.67  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             CCChHHHHHHHHHHHHH---------hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcE
Q 020520          223 GFSGGERKRNEILQLAV---------LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTF  293 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~  293 (325)
                      .|||||+||++||++|+         .+|+||||||||++||+..++.+++.|.++.   .|+|++||+ +.   . +|+
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~---~-~~~  336 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP---G-AAL  336 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT---T-CSE
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc---c-CCE
Confidence            49999999999999999         8999999999999999999999999999874   699999994 43   4 799


Q ss_pred             EEEEeCCEEEEEcCccH
Q 020520          294 IHIMEDGRIIKTGDASI  310 (325)
Q Consensus       294 i~vl~~G~iv~~g~~~~  310 (325)
                      +++|++|+++..|+++.
T Consensus       337 i~~l~~G~i~~~g~~~~  353 (359)
T 2o5v_A          337 TLRAQAGRFTPVADEEM  353 (359)
T ss_dssp             EEEEETTEEEECCCTTT
T ss_pred             EEEEECCEEEecCCHHH
Confidence            99999999999998763

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.90  E-value=1.9e-28  Score=217.84  Aligned_cols=178  Identities=16%  Similarity=0.083  Sum_probs=108.1

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      ...|+||||+|++|++++|+||||||||||+++|+|+  + |  |+|.+ |.++....+....+.+++|+||++..|+.+
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~--~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   83 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE--F-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK   83 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHH--S-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh--C-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence            3479999999999999999999999999999999997  4 5  99999 776543322111123466778887554322


Q ss_pred             c-hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH-----HHHHHhCCCEE
Q 020520          172 N-NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI-----LQLAVLGADLA  245 (325)
Q Consensus       172 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i-----AraL~~~p~lL  245 (325)
                      + ..+++.... .....++.    .   ...+.++++.....  .++    ..|||||+||++|     ||+|+.+|+++
T Consensus        84 ~~~~~~l~~~~-~~~~~~g~----~---~~~i~~~l~~~~~~--il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~  149 (218)
T 1z6g_A           84 LKNEDFLEYDN-YANNFYGT----L---KSEYDKAKEQNKIC--LFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD  149 (218)
T ss_dssp             HHTTCEEEEEE-ETTEEEEE----E---HHHHHHHHHTTCEE--EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred             hhccchhhhhh-cccccCCC----c---HHHHHHHHhCCCcE--EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence            1 000000000 00000010    0   12244445543321  222    2499999999999     89999999999


Q ss_pred             EEeCcCcCCCHHHHHHHHHHHHhccC-------CCcEEEEEeCChhHHhhh
Q 020520          246 ILDEIDSGLDVDALRDVAKAVNGLLT-------PKNSLLMITHYRRLLEFI  289 (325)
Q Consensus       246 lLDEPtsgLD~~~~~~i~~~L~~l~~-------~g~tvIivtHd~~~~~~~  289 (325)
                      +|||||+++|..+.+.+.+.|.++.+       ...+.|+++||++.+...
T Consensus       150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~  200 (218)
T 1z6g_A          150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQ  200 (218)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHH
Confidence            99999999999999998888876532       235667788877766544

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.90  E-value=3.9e-24  Score=212.91  Aligned_cols=75  Identities=28%  Similarity=0.382  Sum_probs=69.4

Q ss_pred             CC-ChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          223 GF-SGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       223 ~L-SgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      .| ||||+|||+|||||+.+|  ++|||||||+|||+.++..|.+.|+++.+ |.|||+||||++++. . ||++++|++
T Consensus       396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~-~d~~~~~~~  472 (517)
T 4ad8_A          396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-R-AHHHYKVEK  472 (517)
T ss_dssp             SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-H-SSEEEEEEC
T ss_pred             hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-h-CCEEEEEec
Confidence            47 999999999999999999  99999999999999999999999999976 789999999999876 4 699999955


Q ss_pred             C
Q 020520          300 G  300 (325)
Q Consensus       300 G  300 (325)
                      +
T Consensus       473 ~  473 (517)
T 4ad8_A          473 Q  473 (517)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.90  E-value=8.9e-26  Score=214.47  Aligned_cols=177  Identities=13%  Similarity=0.095  Sum_probs=128.9

Q ss_pred             eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH----HHH-hhccEEEeccCCc-cCC
Q 020520           96 KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP----EER-SLAGLFMSFQSPV-EIP  169 (325)
Q Consensus        96 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~----~~~-~~~~i~~~~Q~~~-~~~  169 (325)
                      ..+||++++|++++|+||||||||||++.|+|+  +.|++|+|.++|.++.....    ..+ .+.++++++|++. .++
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p  225 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  225 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhh--ccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence            468899999999999999999999999999997  66889999999988754321    111 2346888999987 777


Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEEE
Q 020520          170 GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAIL  247 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLlL  247 (325)
                      ..++.+++.....     .+. +          ..+++.+|+. +..++.+. +||   +||++|||||+.+|+  +|+|
T Consensus       226 ~~tv~e~l~~~~~-----~~~-d----------~~lldt~Gl~-~~~~~~~~-eLS---kqr~~iaral~~~P~e~lLvL  284 (359)
T 2og2_A          226 ATVLSKAVKRGKE-----EGY-D----------VVLCDTSGRL-HTNYSLME-ELI---ACKKAVGKIVSGAPNEILLVL  284 (359)
T ss_dssp             HHHHHHHHHHHHH-----TTC-S----------EEEEECCCCS-SCCHHHHH-HHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred             hhhHHHHHHHHHh-----CCC-H----------HHHHHhcCCC-hhhhhHHH-HHH---HHHHHHHHHHhcCCCceEEEE
Confidence            6777777654321     000 0          0124556664 33444454 499   999999999999999  9999


Q ss_pred             eCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCC---------hhHHhhhCCcEEEEEeCCEEE
Q 020520          248 DEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHY---------RRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       248 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd---------~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      | ||+|||+..+.      +++.+ .|.|+|++||.         +..+... ...|.++..|+.+
T Consensus       285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~-~~pI~~ig~Ge~~  342 (359)
T 2og2_A          285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEEL-GIPVKFIGVGEAV  342 (359)
T ss_dssp             E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHH-CCCEEEEECSSSG
T ss_pred             c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHh-CCCEEEEeCCCCh
Confidence            9 99999998653      23332 37899999993         4444444 4678888888653

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.89  E-value=4e-25  Score=209.47  Aligned_cols=194  Identities=14%  Similarity=0.149  Sum_probs=135.2

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC------
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM------  148 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~------  148 (325)
                      .++++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+  ..|+.|.|.+.|++....      
T Consensus        43 ~~~i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~--~~~~~g~i~~~G~~~~ev~~~i~~  118 (347)
T 2obl_A           43 PDPLLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG--ASADIIVLALIGERGREVNEFLAL  118 (347)
T ss_dssp             SCSTTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH--SCCSEEEEEEESCCHHHHHHHHTT
T ss_pred             CCCeeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC--CCCCEEEEEEecccHHHHHHHHHh
Confidence            457899999999973 36799999 99999999999999999999999999998  678999999988652111      


Q ss_pred             -CHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChH
Q 020520          149 -EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGG  227 (325)
Q Consensus       149 -~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG  227 (325)
                       .... ....+++++|...     .....+...+..                ..+.+.+...+..--..-+.+. .||+|
T Consensus       119 ~~~~~-~~~~v~~~~~~~~-----~~~~r~~~~~~~----------------~~~ae~~~~~~~~vl~~ld~~~-~lS~g  175 (347)
T 2obl_A          119 LPQST-LSKCVLVVTTSDR-----PALERMKAAFTA----------------TTIAEYFRDQGKNVLLMMDSVT-RYARA  175 (347)
T ss_dssp             SCHHH-HTTEEEEEECTTS-----CHHHHHHHHHHH----------------HHHHHHHHTTTCEEEEEEETHH-HHHHH
T ss_pred             hhhhh-hhceEEEEECCCC-----CHHHHHHHHHHH----------------HHHHHHHHhccccHHHHHhhHH-HHHHH
Confidence             1100 1123455555431     111111111100                0011111111110000112333 49999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC--CCc-----EEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT--PKN-----SLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      | |||++|   +.+|++      |+|||+.....+.+++.++.+  +|.     ||+++|||++  ..+ ||++++|.+|
T Consensus       176 ~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i-~d~v~~i~dG  242 (347)
T 2obl_A          176 A-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPI-GDEVRSILDG  242 (347)
T ss_dssp             H-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHH-HHHHHHHCSE
T ss_pred             H-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chh-hhheEEeeCc
Confidence            9 999999   688888      999999999999999999874  477     8999999988  455 6999999999


Q ss_pred             EEEEEcCc
Q 020520          301 RIIKTGDA  308 (325)
Q Consensus       301 ~iv~~g~~  308 (325)
                      +|+.+++.
T Consensus       243 ~Ivl~~~l  250 (347)
T 2obl_A          243 HIVLTREL  250 (347)
T ss_dssp             EEEBCHHH
T ss_pred             EEEEeCCH
Confidence            99988754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.89  E-value=3.1e-25  Score=209.01  Aligned_cols=132  Identities=17%  Similarity=0.174  Sum_probs=102.6

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcch
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNN  173 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~  173 (325)
                      ++++++|.+++|++++|+||||||||||+++|+|+  ++|++|.|.++|.+.....             +..      . 
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i~i~~~~e~~~~-------------~~~------~-  217 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF--IPKEERIISIEDTEEIVFK-------------HHK------N-  217 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG--SCTTSCEEEEESSCCCCCS-------------SCS------S-
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCcEEEECCeeccccc-------------cch------h-
Confidence            78999999999999999999999999999999998  6789999999885311100             000      0 


Q ss_pred             HHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcC
Q 020520          174 IDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSG  253 (325)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsg  253 (325)
                                                        .+++    ..     +  |||+||++|||||..+|++|||||||+.
T Consensus       218 ----------------------------------~i~~----~~-----g--gg~~~r~~la~aL~~~p~ilildE~~~~  252 (330)
T 2pt7_A          218 ----------------------------------YTQL----FF-----G--GNITSADCLKSCLRMRPDRIILGELRSS  252 (330)
T ss_dssp             ----------------------------------EEEE----EC-----B--TTBCHHHHHHHHTTSCCSEEEECCCCST
T ss_pred             ----------------------------------EEEE----Ee-----C--CChhHHHHHHHHhhhCCCEEEEcCCChH
Confidence                                              0000    00     1  8999999999999999999999999982


Q ss_pred             CCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCE
Q 020520          254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       254 LD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~  301 (325)
                             ++.+.|+.+...+.|+|+++|+.+. ... +||+++|.+|.
T Consensus       253 -------e~~~~l~~~~~g~~tvi~t~H~~~~-~~~-~dri~~l~~g~  291 (330)
T 2pt7_A          253 -------EAYDFYNVLCSGHKGTLTTLHAGSS-EEA-FIRLANMSSSN  291 (330)
T ss_dssp             -------HHHHHHHHHHTTCCCEEEEEECSSH-HHH-HHHHHHHHHTS
T ss_pred             -------HHHHHHHHHhcCCCEEEEEEcccHH-HHH-hhhheehhcCC
Confidence                   3566777765544589999999884 444 58999998875

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.88  E-value=3.7e-22  Score=188.48  Aligned_cols=79  Identities=23%  Similarity=0.271  Sum_probs=67.9

Q ss_pred             cccCCCCCChHHHH------HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhC
Q 020520          217 NRNVNEGFSGGERK------RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIK  290 (325)
Q Consensus       217 ~~~~~~~LSgGqrQ------Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~  290 (325)
                      ++.+. .|||||||      |+++|+||+.+|++|||||||+|||+..+..+.+.|+++.++|.|||+||||.++ ... 
T Consensus       243 ~~~~~-~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~-  319 (339)
T 3qkt_A          243 ERPLT-FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDA-  319 (339)
T ss_dssp             EECGG-GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGG-
T ss_pred             cCChH-HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHh-
Confidence            34454 49999999      6677788888999999999999999999999999999987778899999999765 455 


Q ss_pred             CcEEEEEe
Q 020520          291 PTFIHIME  298 (325)
Q Consensus       291 ~d~i~vl~  298 (325)
                      ||++++|+
T Consensus       320 ~d~~~~l~  327 (339)
T 3qkt_A          320 ADHVIRIS  327 (339)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            69998874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.88  E-value=1.3e-23  Score=194.16  Aligned_cols=184  Identities=18%  Similarity=0.171  Sum_probs=116.5

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG  170 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~  170 (325)
                      ..+|+++++.|++|++++|+||||||||||++.|+|.  ..|++| .|.+.+.+.   +....... +..+++...+   
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~---~~~~~~~r-~~~~~~~~~~---   92 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE---SVEETAED-LIGLHNRVRL---   92 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS---CHHHHHHH-HHHHHTTCCG---
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC---CHHHHHHH-HHHHHcCCCh---
Confidence            4589999999999999999999999999999999997  456667 676544332   33322111 1122232211   


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH-HHHHHHHHHHHhCCCEEEEeC
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE-RKRNEILQLAVLGADLAILDE  249 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq-rQRv~iAraL~~~p~lLlLDE  249 (325)
                       ...+++.... ..          ..+....+.++++..++.   ....+. .+|.+| +||+. |+++..+|++||+||
T Consensus        93 -~~~~~l~~~~-~~----------~~~~~~~~~~~l~~~~l~---i~~~~~-~~~~~~l~~~~~-a~~~~~~p~llilDe  155 (296)
T 1cr0_A           93 -RQSDSLKREI-IE----------NGKFDQWFDELFGNDTFH---LYDSFA-EAETDRLLAKLA-YMRSGLGCDVIILDH  155 (296)
T ss_dssp             -GGCHHHHHHH-HH----------HTHHHHHHHHHHSSSCEE---EECCCC-SCCHHHHHHHHH-HHHHTTCCSEEEEEE
T ss_pred             -hhccccccCC-CC----------HHHHHHHHHHHhccCCEE---EECCCC-CCCHHHHHHHHH-HHHHhcCCCEEEEcC
Confidence             1111111110 00          111222233334333321   222223 489999 66666 999999999999999


Q ss_pred             cCc---C---CCH-HHHHHHHHHHHhccCC-CcEEEEEeCCh--h--------------------HHhhhCCcEEEEEeC
Q 020520          250 IDS---G---LDV-DALRDVAKAVNGLLTP-KNSLLMITHYR--R--------------------LLEFIKPTFIHIMED  299 (325)
Q Consensus       250 Pts---g---LD~-~~~~~i~~~L~~l~~~-g~tvIivtHd~--~--------------------~~~~~~~d~i~vl~~  299 (325)
                      ||+   +   +|. .....+.+.|++++++ |.|||++||+.  +                    .+... ||+|++|++
T Consensus       156 pt~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~-aD~vi~L~~  234 (296)
T 1cr0_A          156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQL-SDTIIALER  234 (296)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHH-CSEEEEEEE
T ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhh-CcEEEEEec
Confidence            999   5   455 6778899999998755 89999999995  4                    55666 799999998


Q ss_pred             CEE
Q 020520          300 GRI  302 (325)
Q Consensus       300 G~i  302 (325)
                      |+.
T Consensus       235 ~~~  237 (296)
T 1cr0_A          235 NQQ  237 (296)
T ss_dssp             C--
T ss_pred             Ccc
Confidence            875

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.88  E-value=8.4e-24  Score=224.29  Aligned_cols=170  Identities=21%  Similarity=0.242  Sum_probs=117.8

Q ss_pred             CCCcEEEEE-----EEEEECCCcccceeeeEEEEeC-------CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC
Q 020520           74 SQPLLQVTG-----LTAVIAESKQEILKGVNLLVNE-------GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK  141 (325)
Q Consensus        74 ~~~~l~~~~-----ls~~y~~~~~~iL~~vsl~i~~-------Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~  141 (325)
                      ..++|+++|     |++.|.+ ++.+++|++|++++       |++++|+||||||||||+|++ |+  ..+        
T Consensus       747 ~~~~l~i~~~rHP~l~~~~~~-~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl--~~~--------  814 (1022)
T 2o8b_B          747 TPPFLELKGSRHPCITKTFFG-DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL--LAV--------  814 (1022)
T ss_dssp             SCCCEEEEEECCCC------C-CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH--HHH--------
T ss_pred             CCceEEEEeccccEEEEEecC-CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH--HHH--------
Confidence            356899999     9999942 36799999999987       999999999999999999999 97  221        


Q ss_pred             CEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCC
Q 020520          142 GENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVN  221 (325)
Q Consensus       142 g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  221 (325)
                                 .++.+ +++||++..   +++.+.+                            +.++|.. +.......
T Consensus       815 -----------~aqiG-~~Vpq~~~~---l~v~d~I----------------------------~~rig~~-d~~~~~~s  850 (1022)
T 2o8b_B          815 -----------MAQMG-CYVPAEVCR---LTPIDRV----------------------------FTRLGAS-DRIMSGES  850 (1022)
T ss_dssp             -----------HHTTT-CCEESSEEE---ECCCSBE----------------------------EEECC----------C
T ss_pred             -----------Hhhee-EEeccCcCC---CCHHHHH----------------------------HHHcCCH-HHHhhchh
Confidence                       11222 267887632   2221111                            0111221 11111222


Q ss_pred             CCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHH-HHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          222 EGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDAL-RDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       222 ~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                       .+|+++++ +++|++++.+|+++||||||+|+|+... ..++.+|..+.++ |.++|++||+++++..+ +|++.++ +
T Consensus       851 -tf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~-~d~~~v~-~  926 (1022)
T 2o8b_B          851 -TFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDY-SQNVAVR-L  926 (1022)
T ss_dssp             -HHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHT-SSCSSEE-E
T ss_pred             -hhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHh-CCcceee-c
Confidence             37877665 9999999999999999999999999874 5578888888765 88999999999998876 5877665 5


Q ss_pred             CEEE
Q 020520          300 GRII  303 (325)
Q Consensus       300 G~iv  303 (325)
                      |++.
T Consensus       927 g~~~  930 (1022)
T 2o8b_B          927 GHMA  930 (1022)
T ss_dssp             EEEE
T ss_pred             CeEE
Confidence            8877

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=7.4e-23  Score=214.10  Aligned_cols=106  Identities=21%  Similarity=0.295  Sum_probs=94.0

Q ss_pred             HHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 020520          202 LYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI  279 (325)
Q Consensus       202 ~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIiv  279 (325)
                      ..+.+..+|+....+++.+.+ |||||+|||+|||||+++|+  +|||||||+|||+...++++++|++++++|.|||+|
T Consensus       444 ~~~~L~~vgL~~l~l~r~~~~-LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV  522 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSATT-LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV  522 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBGGG-CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred             HHHHHHHcCCccccccCCccc-CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            345688899864346777764 99999999999999999887  999999999999999999999999998889999999


Q ss_pred             eCChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          280 THYRRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       280 tHd~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      |||++++..  ||+|++|      ++|++++.|+++.
T Consensus       523 tHd~~~~~~--aD~ii~lgpgag~~~G~iv~~G~~~e  557 (916)
T 3pih_A          523 EHDEEVIRN--ADHIIDIGPGGGTNGGRVVFQGTVDE  557 (916)
T ss_dssp             CCCHHHHHT--CSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred             eCCHHHHHh--CCEEEEEcCCcccCCCEEEEeechhh
Confidence            999998764  7999999      8999999998764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.88  E-value=2.6e-25  Score=203.94  Aligned_cols=150  Identities=12%  Similarity=0.031  Sum_probs=89.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      .++|+||||||||||+|+|+|+  ..|++|+|.++|+++...    .....+++++|++.+++.+++.+++.++...   
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~--~~~~~G~i~~~g~~i~~~----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~---   74 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS--QVSRKASSWNREEKIPKT----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI---   74 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH--HC------------CCCC----CSCCEEEESCC----CCEEEEECCCC--CCS---
T ss_pred             EEEEECCCCCCHHHHHHHHhCC--CCCCCCccccCCcccCcc----eeeeeeEEEeecCCCcCCceEEechhhhhhc---
Confidence            4899999999999999999998  678999999999887432    1224688999999888888887765443211   


Q ss_pred             hcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 020520          187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV  266 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L  266 (325)
                       ..  ....    +.+.+.++     ..+.+.... +|||||+||+++|||++.   +++||||+++||+..    .+.+
T Consensus        75 -~~--~~~~----~~i~~~~~-----~~~~~~~~~-~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l  134 (270)
T 3sop_A           75 -NN--ENCW----EPIEKYIN-----EQYEKFLKE-EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFM  134 (270)
T ss_dssp             -BC--TTCS----HHHHHHHH-----HHHHHHHHH-HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHH
T ss_pred             -cc--HHHH----HHHHHHHH-----HHHHhhhHH-hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHH
Confidence             00  0011    11222222     122233333 499999999999999886   999999999999987    3344


Q ss_pred             HhccCCCcEEEEEeCChhHH
Q 020520          267 NGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       267 ~~l~~~g~tvIivtHd~~~~  286 (325)
                      +.+.+. .+||+|.|..+.+
T Consensus       135 ~~L~~~-~~vI~Vi~K~D~l  153 (270)
T 3sop_A          135 KHLSKV-VNIIPVIAKADTM  153 (270)
T ss_dssp             HHHHTT-SEEEEEETTGGGS
T ss_pred             HHHHhc-CcEEEEEeccccC
Confidence            444444 6888888876533

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.88  E-value=6.5e-23  Score=204.43  Aligned_cols=173  Identities=11%  Similarity=0.044  Sum_probs=122.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .+++++++..|++ -..+|   +..|.+|++++|+|+||||||||+++++|+  ..+ .|+                  .
T Consensus       257 ~~~~~~l~~g~~~-ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~--~~~-~G~------------------~  311 (525)
T 1tf7_A          257 RSSNVRVSSGVVR-LDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVEN--ACA-NKE------------------R  311 (525)
T ss_dssp             CCCCCEECCSCHH-HHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHH--HHT-TTC------------------C
T ss_pred             ccccceeecChHH-HHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHh-CCC------------------C
Confidence            3556666654421 01233   348999999999999999999999999996  334 343                  0


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++.+|++.       .......     ..++.   ..       .+ +...++. .+.+..+. .|||||+||+++|+
T Consensus       312 vi~~~~ee~~-------~~l~~~~-----~~~g~---~~-------~~-~~~~g~~-~~~~~~p~-~LS~g~~q~~~~a~  366 (525)
T 1tf7_A          312 AILFAYEESR-------AQLLRNA-----YSWGM---DF-------EE-MERQNLL-KIVCAYPE-SAGLEDHLQIIKSE  366 (525)
T ss_dssp             EEEEESSSCH-------HHHHHHH-----HTTSC---CH-------HH-HHHTTSE-EECCCCGG-GSCHHHHHHHHHHH
T ss_pred             EEEEEEeCCH-------HHHHHHH-----HHcCC---CH-------HH-HHhCCCE-EEEEeccc-cCCHHHHHHHHHHH
Confidence            1345566541       1111100     01111   11       11 2234442 34555555 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHH-----HHHHHHHHHHhccCCCcEEEEEeCCh----------hHHhhhCCcEEEEEeCCE
Q 020520          237 LAVLGADLAILDEIDSGLDVD-----ALRDVAKAVNGLLTPKNSLLMITHYR----------RLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~-----~~~~i~~~L~~l~~~g~tvIivtHd~----------~~~~~~~~d~i~vl~~G~  301 (325)
                      ++..+|++||+| ||++||..     .++.+.++++.+++.|.|||++||+.          +.+..+ ||+|++|++|+
T Consensus       367 ~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~-~D~vi~L~~ge  444 (525)
T 1tf7_A          367 INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI-TDTIILLQYVE  444 (525)
T ss_dssp             HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT-CSEEEEEEEEE
T ss_pred             HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccccee-eeEEEEEEEEE
Confidence            999999999999 99999999     99999999999887799999999998          667666 79999998876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.88  E-value=1.7e-26  Score=215.99  Aligned_cols=182  Identities=13%  Similarity=0.022  Sum_probs=125.0

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEE-----------------------EeCCCEEEEEcCCCccHHHHHHHHhCCCCC
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLL-----------------------VNEGEVHAIMGKNGSGKSTLSKVLVGHPDY  131 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~-----------------------i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~  131 (325)
                      ...|+++||++.|.    ++++++++.                       +++|+++||+||||||||||+++|+|+  +
T Consensus        41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl--l  114 (312)
T 3aez_A           41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL--L  114 (312)
T ss_dssp             TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH--H
T ss_pred             CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh--c
Confidence            44689999999994    567776664                       899999999999999999999999997  5


Q ss_pred             CCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCC
Q 020520          132 EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM  211 (325)
Q Consensus       132 ~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  211 (325)
                      .|+.|.                  ..+++++|++.+++. ++.+++....     ..+.+   .....+.+.+.++.++-
T Consensus       115 ~~~~G~------------------~~v~~v~qd~~~~~~-t~~e~~~~~~-----~~g~~---~~~d~~~~~~~L~~l~~  167 (312)
T 3aez_A          115 ARWDHH------------------PRVDLVTTDGFLYPN-AELQRRNLMH-----RKGFP---ESYNRRALMRFVTSVKS  167 (312)
T ss_dssp             HTSTTC------------------CCEEEEEGGGGBCCH-HHHHHTTCTT-----CTTSG---GGBCHHHHHHHHHHHHT
T ss_pred             cccCCC------------------CeEEEEecCccCCcc-cHHHHHHHHH-----hcCCC---hHHHHHHHHHHHHHhCC
Confidence            566552                  237789999987776 7666542210     01111   11112345667777762


Q ss_pred             ccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCC
Q 020520          212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKP  291 (325)
Q Consensus       212 ~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~  291 (325)
                        ...+..+. .|||||+||+++|+|++.+|+|||||||++.+|+..     ..+.++.  + ..|+|+|+.+.......
T Consensus       168 --~~~~~~~~-~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~--D-~~I~V~a~~~~~~~R~i  236 (312)
T 3aez_A          168 --GSDYACAP-VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF--D-FSLYVDARIEDIEQWYV  236 (312)
T ss_dssp             --TCSCEEEE-EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC--S-EEEEEEECHHHHHHHHH
T ss_pred             --CcccCCcc-cCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc--C-cEEEEECCHHHHHHHHH
Confidence              23344555 499999999999999999999999999999998621     1122322  3 45788888766433223


Q ss_pred             cEEEEEeCC
Q 020520          292 TFIHIMEDG  300 (325)
Q Consensus       292 d~i~vl~~G  300 (325)
                      +|.+.+.+|
T Consensus       237 ~R~~~~rd~  245 (312)
T 3aez_A          237 SRFLAMRTT  245 (312)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHhc
Confidence            454334443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.87  E-value=4.4e-25  Score=220.10  Aligned_cols=181  Identities=14%  Similarity=0.099  Sum_probs=119.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEE-EEeCCCEEEEEcCCCccHHHHHHH--HhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNL-LVNEGEVHAIMGKNGSGKSTLSKV--LVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~--l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      +++.+++.+ |+. +.++|++++| .|++|++++|+||||||||||+++  ++|+  .+|++|.|+++|++...  ....
T Consensus        12 ~~~~~~~~~-~~~-g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl--~~~~~g~i~v~g~~~~~--~~~~   85 (525)
T 1tf7_A           12 NSEHQAIAK-MRT-MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--IEFDEPGVFVTFEETPQ--DIIK   85 (525)
T ss_dssp             --CCSSCCE-ECC-CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSSCHH--HHHH
T ss_pred             Ccccccccc-ccC-CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEeCCHH--HHHH
Confidence            455555654 443 4689999999 999999999999999999999999  6897  55689999999986211  1111


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      ....+++++|++.....+..       .     .......        ..++++.+++. ++.++.+. .||||      
T Consensus        86 ~~~~~g~~~q~~~~~~~l~~-------~-----~~~~~~~--------~~~~l~~~~l~-~~~~~~~~-~LS~g------  137 (525)
T 1tf7_A           86 NARSFGWDLAKLVDEGKLFI-------L-----DASPDPE--------GQEVVGGFDLS-ALIERINY-AIQKY------  137 (525)
T ss_dssp             HHGGGTCCHHHHHHTTSEEE-------E-----ECCCCSS--------CCSCCSSHHHH-HHHHHHHH-HHHHH------
T ss_pred             HHHHcCCChHHhhccCcEEE-------E-----ecCcccc--------hhhhhcccCHH-HHHHHHHH-HHHHc------
Confidence            22346778887642111000       0     0000000        00011111221 12222222 25555      


Q ss_pred             HHHHHHhCCCEEEEeCcCc-----CCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH---------hhhCCcEEEEEeC
Q 020520          234 ILQLAVLGADLAILDEIDS-----GLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL---------EFIKPTFIHIMED  299 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPts-----gLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~---------~~~~~d~i~vl~~  299 (325)
                             +|++++|||||+     +||+..++.++++++++++.|.|||++||+++.+         ..+ ||+|++|++
T Consensus       138 -------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~l-aD~vi~L~~  209 (525)
T 1tf7_A          138 -------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFV-SDNVVILRN  209 (525)
T ss_dssp             -------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHH-CSEEEEEEE
T ss_pred             -------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeee-eeEEEEEEE
Confidence                   588999999998     4699999999999999977789999999999874         444 699999988

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.86  E-value=2.2e-21  Score=162.20  Aligned_cols=84  Identities=23%  Similarity=0.268  Sum_probs=72.2

Q ss_pred             ccccCCCCCChHHHHHHHHH------HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhh
Q 020520          216 LNRNVNEGFSGGERKRNEIL------QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFI  289 (325)
Q Consensus       216 ~~~~~~~~LSgGqrQRv~iA------raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~  289 (325)
                      .++.+. +||||||||++||      |||+.+|++|||||||+|||+.+++.+.+.|.++.++|.|||+||||++ +...
T Consensus        51 ~~~~~~-~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~  128 (148)
T 1f2t_B           51 KERPLT-FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA  128 (148)
T ss_dssp             EEECGG-GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred             ccCChh-HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHh
Confidence            345555 5999999999876      8999999999999999999999999999999998766889999999985 4455


Q ss_pred             CCcEEEEE--eCCEE
Q 020520          290 KPTFIHIM--EDGRI  302 (325)
Q Consensus       290 ~~d~i~vl--~~G~i  302 (325)
                       ||++++|  ++|..
T Consensus       129 -~d~ii~l~~~~g~s  142 (148)
T 1f2t_B          129 -ADHVIRISLENGSS  142 (148)
T ss_dssp             -CSEEEEEEEETTEE
T ss_pred             -CCEEEEEEcCCCeE
Confidence             6999999  45643

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.85  E-value=1.4e-21  Score=205.28  Aligned_cols=165  Identities=18%  Similarity=0.141  Sum_probs=113.9

Q ss_pred             CCcEEEEEEEEEECC---CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHH--------hCCCCCCCCccEEEECCE
Q 020520           75 QPLLQVTGLTAVIAE---SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVL--------VGHPDYEVTEGSVVFKGE  143 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~---~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l--------~Gl~~~~p~~G~I~~~g~  143 (325)
                      ...+.+++...-+-.   +++.+++|++|++++|++++|+||||||||||+|++        .|.  +-|.++..     
T Consensus       629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~--~vpa~~~~-----  701 (934)
T 3thx_A          629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC--FVPCESAE-----  701 (934)
T ss_dssp             SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTC--CBSEEEEE-----
T ss_pred             CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCC--cccccccc-----
Confidence            345777776533311   235689999999999999999999999999999999        443  22222110     


Q ss_pred             eCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCC
Q 020520          144 NLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG  223 (325)
Q Consensus       144 ~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  223 (325)
                                    +..+ .                                        .++.++++... .    ...
T Consensus       702 --------------~~~~-d----------------------------------------~i~~~ig~~d~-l----~~~  721 (934)
T 3thx_A          702 --------------VSIV-D----------------------------------------CILARVGAGDS-Q----LKG  721 (934)
T ss_dssp             --------------EECC-S----------------------------------------EEEEECC-------------
T ss_pred             --------------chHH-H----------------------------------------HHHHhcCchhh-H----HHh
Confidence                          0000 0                                        00111222110 1    124


Q ss_pred             CChHHHHHHHHHHHH--HhCCCEEEEeCcCcCCCHHHHHHH-HHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          224 FSGGERKRNEILQLA--VLGADLAILDEIDSGLDVDALRDV-AKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       224 LSgGqrQRv~iAraL--~~~p~lLlLDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      +|+|+++++.+|+++  +.+|+++||||||+|||+.....+ ..++..+.+ .|.++|++||+.++.. + +|++..+.+
T Consensus       722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~-l-ad~~~~v~n  799 (934)
T 3thx_A          722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTA-L-ANQIPTVNN  799 (934)
T ss_dssp             -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGG-G-GGTCTTEEE
T ss_pred             HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHH-H-hcccceeEe
Confidence            888888888888888  899999999999999999988888 666677764 4889999999988765 4 588878899


Q ss_pred             CEEEEEcCc
Q 020520          300 GRIIKTGDA  308 (325)
Q Consensus       300 G~iv~~g~~  308 (325)
                      |++...++.
T Consensus       800 g~v~~~~~~  808 (934)
T 3thx_A          800 LHVTALTTE  808 (934)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEEecC
Confidence            998876654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.84  E-value=1.5e-20  Score=182.92  Aligned_cols=74  Identities=20%  Similarity=0.317  Sum_probs=66.4

Q ss_pred             CCChHHHHHHHHHHHHH----hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          223 GFSGGERKRNEILQLAV----LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      .||||||||++||++|+    .+|+++||||||++||+..+..+.+.|+++.+++.++|++||+...+. . ||+++++.
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~-~-~d~~~~~~  410 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-K-SDALVGVY  410 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-T-CSEEEEEE
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-h-CCEEEEEE
Confidence            39999999999999999    579999999999999999999999999998766789999999977654 4 68998875

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.84  E-value=4.3e-21  Score=200.10  Aligned_cols=104  Identities=18%  Similarity=0.268  Sum_probs=92.4

Q ss_pred             HHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020520          204 PKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH  281 (325)
Q Consensus       204 ~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH  281 (325)
                      +.+..+|+..-.+++.+.+ |||||+|||+||++|..+|  ++|||||||+|||+...+++++.|+++++.|.|||+|+|
T Consensus       486 ~~L~~vGL~~l~ldR~~~t-LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeH  564 (972)
T 2r6f_A          486 GFLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH  564 (972)
T ss_dssp             HHHHHHTCTTSBSSSBGGG-CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECC
T ss_pred             HHhhhCCCCccccCCcccc-CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            3578889863336777765 9999999999999999985  999999999999999999999999999888999999999


Q ss_pred             ChhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          282 YRRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       282 d~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      |++++. . ||+|++|      ++|++++.|+++.
T Consensus       565 dl~~i~-~-ADrIi~LgpgaG~~gG~iv~~G~~~e  597 (972)
T 2r6f_A          565 DEDTML-A-ADYLIDIGPGAGIHGGEVVAAGTPEE  597 (972)
T ss_dssp             CHHHHH-S-CSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred             CHHHHH-h-CCEEEEeCCCccCCCCEEEEecCHHH
Confidence            999876 4 7999999      7999999998763

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.84  E-value=9.6e-23  Score=183.74  Aligned_cols=170  Identities=12%  Similarity=0.044  Sum_probs=98.7

Q ss_pred             CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCC
Q 020520           90 SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP  169 (325)
Q Consensus        90 ~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~  169 (325)
                      +++.+|+|+||++++|+++||+||||||||||+++|+|+  +    |.+.++          . ....+++++|+. +++
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~--l----G~~~~~----------~-~~~~i~~v~~d~-~~~   71 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL--L----GQNEVE----------Q-RQRKVVILSQDR-FYK   71 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHH--H----TGGGSC----------G-GGCSEEEEEGGG-GBC
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH--h----chhccc----------c-cCCceEEEeCCc-Ccc
Confidence            346799999999999999999999999999999999995  2    544443          1 123477889985 566


Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 020520          170 GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDE  249 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDE  249 (325)
                      .++..++......    ....... .......+.+.++.+.   +..+..+.. ||+||+||+++ ++++.+|+++||||
T Consensus        72 ~l~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~L~~l~---~~~~~~~~~-ls~g~~~r~~~-~~~~~~~~~lilDg  141 (245)
T 2jeo_A           72 VLTAEQKAKALKG----QYNFDHP-DAFDNDLMHRTLKNIV---EGKTVEVPT-YDFVTHSRLPE-TTVVYPADVVLFEG  141 (245)
T ss_dssp             CCCHHHHHHHHTT----CCCTTSG-GGBCHHHHHHHHHHHH---TTCCEEECC-EETTTTEECSS-CEEECCCSEEEEEC
T ss_pred             ccCHhHhhhhhcc----CCCCCCc-ccccHHHHHHHHHHHH---CCCCeeccc-ccccccCccCc-eEEecCCCEEEEeC
Confidence            6777665533211    0111000 0001122334444432   223445554 99999999988 68888999999999


Q ss_pred             cCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC-hhHHhhhCCcEEEEEeCCE
Q 020520          250 IDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY-RRLLEFIKPTFIHIMEDGR  301 (325)
Q Consensus       250 PtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd-~~~~~~~~~d~i~vl~~G~  301 (325)
                      |....|..        +.++.  +.+|+++||+ .+....+ ++.+   ++|+
T Consensus       142 ~~~~~~~~--------l~~~~--~~~i~v~th~~~~~~r~~-~r~~---~~G~  180 (245)
T 2jeo_A          142 ILVFYSQE--------IRDMF--HLRLFVDTDSDVRLSRRV-LRDV---RRGR  180 (245)
T ss_dssp             TTTTTSHH--------HHTTC--SEEEEEECCHHHHHHHHH-HHHT---C---
T ss_pred             ccccccHH--------HHHhc--CeEEEEECCHHHHHHHHH-HHHH---HcCC
Confidence            98888764        23332  6799999996 4444444 3433   5564

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.83  E-value=6.6e-22  Score=207.14  Aligned_cols=155  Identities=21%  Similarity=0.231  Sum_probs=102.5

Q ss_pred             CcEEEEEEEEEE-----CCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH
Q 020520           76 PLLQVTGLTAVI-----AESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP  150 (325)
Q Consensus        76 ~~l~~~~ls~~y-----~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~  150 (325)
                      ..+.+++...-+     +.+++.+++|++|++++|++++|+||||||||||+|+++++. +.+..|.             
T Consensus       639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~-~~aq~g~-------------  704 (918)
T 3thx_B          639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT-IMAQIGS-------------  704 (918)
T ss_dssp             CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH-HHHHHTC-------------
T ss_pred             CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH-HHhhcCc-------------
Confidence            357777654322     112467999999999999999999999999999999998741 1111111             


Q ss_pred             HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHH
Q 020520          151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERK  230 (325)
Q Consensus       151 ~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQ  230 (325)
                               ++++....+....                               .++.+++.. +...+... .+|+||+|
T Consensus       705 ---------~vpa~~~~i~~~d-------------------------------~i~~~ig~~-d~l~~~~s-tfs~em~~  742 (918)
T 3thx_B          705 ---------YVPAEEATIGIVD-------------------------------GIFTRMGAA-DNIYKGRS-TFMEELTD  742 (918)
T ss_dssp             ---------CBSSSEEEEECCS-------------------------------EEEEEC-----------C-CHHHHHHH
T ss_pred             ---------cccchhhhhhHHH-------------------------------HHHHhCChH-HHHHHhHH-HhhHHHHH
Confidence                     1111100000000                               001111111 11222233 49999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHH-HHHHhccC-CCcEEEEEeCChhHHh
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVA-KAVNGLLT-PKNSLLMITHYRRLLE  287 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~-~~L~~l~~-~g~tvIivtHd~~~~~  287 (325)
                      ++.|+++ +.+|+++||||||+|||+.....+. .++..+.+ .|.|+|++|||++++.
T Consensus       743 ~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~  800 (918)
T 3thx_B          743 TAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE  800 (918)
T ss_dssp             HHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence            9999998 8999999999999999999998887 67777754 5899999999988764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.82  E-value=2.1e-20  Score=194.19  Aligned_cols=103  Identities=21%  Similarity=0.252  Sum_probs=91.8

Q ss_pred             HHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020520          205 KLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY  282 (325)
Q Consensus       205 ~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd  282 (325)
                      .+..+|+..-.+++.+.+ |||||+|||+||++|+.+|  ++|||||||++||+...++++++|+++++.|.|||+|+||
T Consensus       362 ~L~~vGL~~l~l~r~~~t-LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd  440 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPT-LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD  440 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGG-SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred             HHHhCCCCcCCccCCcCc-CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence            578899863236777764 9999999999999999999  5999999999999999999999999998889999999999


Q ss_pred             hhHHhhhCCcEEEEE------eCCEEEEEcCccH
Q 020520          283 RRLLEFIKPTFIHIM------EDGRIIKTGDASI  310 (325)
Q Consensus       283 ~~~~~~~~~d~i~vl------~~G~iv~~g~~~~  310 (325)
                      ++++. . ||+|++|      ++|++++.|+++.
T Consensus       441 l~~l~-~-aD~ii~lgpgaG~~~G~iv~~g~~~~  472 (842)
T 2vf7_A          441 LDVIR-R-ADWLVDVGPEAGEKGGEILYSGPPEG  472 (842)
T ss_dssp             HHHHT-T-CSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred             HHHHH-h-CCEEEEeCCCcccCCCEEEEecCHHH
Confidence            99775 4 7999999      7999999998763

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.82  E-value=1.1e-21  Score=178.91  Aligned_cols=139  Identities=14%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-ccEEEECCEeCCCCCHHHHhh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-EGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+++++|++  +    ++|+++|  +++|++++|+||||||||||+++|+|+  ++|+ +|+|.++|.++..        
T Consensus         5 ~~~l~~l~~--~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~--------   66 (261)
T 2eyu_A            5 IPEFKKLGL--P----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEY--------   66 (261)
T ss_dssp             -CCGGGSSC--C----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCS--------
T ss_pred             CCChHHCCC--H----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCccee--------
Confidence            345566653  2    4899999  999999999999999999999999997  6677 8999998876421        


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                           ++|+...+                   ...                ..+++..       . .|      |++||
T Consensus        67 -----~~~~~~~~-------------------v~q----------------~~~gl~~-------~-~l------~~~la   92 (261)
T 2eyu_A           67 -----VFKHKKSI-------------------VNQ----------------REVGEDT-------K-SF------ADALR   92 (261)
T ss_dssp             -----CCCCSSSE-------------------EEE----------------EEBTTTB-------S-CH------HHHHH
T ss_pred             -----ecCCccee-------------------eeH----------------HHhCCCH-------H-HH------HHHHH
Confidence                 22322100                   000                0122211       1 13      89999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEE
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI  296 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~v  296 (325)
                      +||..+|++||+||||   |+++...+++.   . ..|.+|++++|+.+.. .. +|++++
T Consensus        93 ~aL~~~p~illlDEp~---D~~~~~~~l~~---~-~~g~~vl~t~H~~~~~-~~-~dri~~  144 (261)
T 2eyu_A           93 AALREDPDVIFVGEMR---DLETVETALRA---A-ETGHLVFGTLHTNTAI-DT-IHRIVD  144 (261)
T ss_dssp             HHHHHCCSEEEESCCC---SHHHHHHHHHH---H-HTTCEEEEEECCSSHH-HH-HHHHHH
T ss_pred             HHHhhCCCEEEeCCCC---CHHHHHHHHHH---H-ccCCEEEEEeCcchHH-HH-HHHHhh
Confidence            9999999999999999   99887655443   2 3588999999997743 33 355433

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.82  E-value=6.3e-21  Score=196.88  Aligned_cols=146  Identities=25%  Similarity=0.213  Sum_probs=104.8

Q ss_pred             CCcEEEEEEEEEECC---CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH
Q 020520           75 QPLLQVTGLTAVIAE---SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~---~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~  151 (325)
                      ...+++++..  ++-   +++.+++|+||+   |++++|+||||||||||+|+|+|+. ..++.|.+.      .    .
T Consensus       548 ~~~i~i~~~r--HP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~-~~~~~G~~v------p----a  611 (765)
T 1ewq_A          548 GDRLQIRAGR--HPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIA-LLAQVGSFV------P----A  611 (765)
T ss_dssp             SSSEEEEEEC--CTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHH-HHHTTTCCB------S----S
T ss_pred             CCcEEEEEeE--CceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhh-hhcccCcee------e----h
Confidence            3468888873  432   236789999999   9999999999999999999999962 124566542      0    0


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                      .  ...+++++|   +++.+++.+                                      +     +..++|+|++|+
T Consensus       612 ~--~~~i~~v~~---i~~~~~~~d--------------------------------------~-----l~~g~S~~~~e~  643 (765)
T 1ewq_A          612 E--EAHLPLFDG---IYTRIGASD--------------------------------------D-----LAGGKSTFMVEM  643 (765)
T ss_dssp             S--EEEECCCSE---EEEECCC-------------------------------------------------CCSHHHHHH
T ss_pred             h--ccceeeHHH---hhccCCHHH--------------------------------------H-----HHhcccHHHHHH
Confidence            0  112444433   111111110                                      0     001389999999


Q ss_pred             HHHHHHH--HhCCCEEEEeCc---CcCCCHHHH-HHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020520          232 NEILQLA--VLGADLAILDEI---DSGLDVDAL-RDVAKAVNGLLTPKNSLLMITHYRRLLE  287 (325)
Q Consensus       232 v~iAraL--~~~p~lLlLDEP---tsgLD~~~~-~~i~~~L~~l~~~g~tvIivtHd~~~~~  287 (325)
                      +.+|+++  +.+|+++|||||   |++||..+. ..+++.|.+   .|.|+|++|||.++..
T Consensus       644 ~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          644 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA  702 (765)
T ss_dssp             HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT
T ss_pred             HHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH
Confidence            9999999  999999999999   999999886 578888876   4789999999988764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.80  E-value=3.7e-20  Score=163.40  Aligned_cols=168  Identities=11%  Similarity=0.106  Sum_probs=110.9

Q ss_pred             ccceeeeEE-EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH-hh-ccEEEeccCCccC
Q 020520           92 QEILKGVNL-LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER-SL-AGLFMSFQSPVEI  168 (325)
Q Consensus        92 ~~iL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~-~~-~~i~~~~Q~~~~~  168 (325)
                      .+.|+++.. .+++|++++|+||||||||||++.|++.  ..+..|.|.+.+.+.   +.... .. ..+++.+|.....
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   83 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK   83 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC
Confidence            567888887 8999999999999999999999999985  345667777765432   12111 10 0111111211000


Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCC--EEE
Q 020520          169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAD--LAI  246 (325)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--lLl  246 (325)
                       .+..              ..  ..            ...++ . ...    ....|.++.++...+.+...+|+  ++|
T Consensus        84 -~~~~--------------~~--~~------------~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lli  128 (235)
T 2w0m_A           84 -KLII--------------ID--AL------------MKEKE-D-QWS----LVNLTPEELVNKVIEAKQKLGYGKARLV  128 (235)
T ss_dssp             -TEEE--------------EE--CC------------C-----C-TTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             -CEEE--------------Ee--cc------------ccccC-c-eee----ecCCCHHHHHHHHHHHHHhhCCCceEEE
Confidence             0000              00  00            00000 0 011    11359999999988888888999  999


Q ss_pred             EeCcCcCC--CHHHHHHHHHHHHhccC-CCcEEEEEeCCh--------hHHhhhCCcEEEEEeCC
Q 020520          247 LDEIDSGL--DVDALRDVAKAVNGLLT-PKNSLLMITHYR--------RLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       247 LDEPtsgL--D~~~~~~i~~~L~~l~~-~g~tvIivtHd~--------~~~~~~~~d~i~vl~~G  300 (325)
                      +||||+++  |+.....+++.|+++++ .|.|||++||+.        ..+..+ ||+|++|++.
T Consensus       129 lDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~-~d~vi~l~~~  192 (235)
T 2w0m_A          129 IDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV-ADGIIRFRRM  192 (235)
T ss_dssp             EETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH-CSEEEEEEEE
T ss_pred             EECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee-eeEEEEEEEE
Confidence            99999888  99999999999999864 489999999998        346666 6999999753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.80  E-value=4.4e-21  Score=169.52  Aligned_cols=150  Identities=17%  Similarity=0.205  Sum_probs=91.5

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-----ccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHH
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-----EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNID  175 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~  175 (325)
                      .|++|++++|+||||||||||+++|+|+...++.     .|.+++++++.  .....     +.+++|...++       
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~~~~-----i~~~~~~~~~~-------   86 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FRPER-----IREIAQNRGLD-------   86 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHH-----HHHHHHHTTSC-------
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CCHHH-----HHHHHHHcCCC-------
Confidence            6999999999999999999999999995223333     33566665431  11110     11112221110       


Q ss_pred             HHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH-HHHHHHHHHHHh-------CCCEEEE
Q 020520          176 FLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE-RKRNEILQLAVL-------GADLAIL  247 (325)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq-rQRv~iAraL~~-------~p~lLlL  247 (325)
                                         ..       ...+.+.+.        . .+++++ ++.+..+++++.       +|+++++
T Consensus        87 -------------------~~-------~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llil  131 (231)
T 4a74_A           87 -------------------PD-------EVLKHIYVA--------R-AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV  131 (231)
T ss_dssp             -------------------HH-------HHHHTEEEE--------E-CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEE
T ss_pred             -------------------HH-------HHhhcEEEE--------e-cCChHHHHHHHHHHHHHHHHhcccCCceeEEEE
Confidence                               00       112222111        0 134443 444666666666       9999999


Q ss_pred             eCcCcCCCHH-------H-----HHHHHHHHHhccCC-CcEEEEEeCChh----HHhhhCCcEEEEEeCC
Q 020520          248 DEIDSGLDVD-------A-----LRDVAKAVNGLLTP-KNSLLMITHYRR----LLEFIKPTFIHIMEDG  300 (325)
Q Consensus       248 DEPtsgLD~~-------~-----~~~i~~~L~~l~~~-g~tvIivtHd~~----~~~~~~~d~i~vl~~G  300 (325)
                      ||||+++|+.       .     ...+++.|.++.++ |.|||++||+.+    .+... +|++++|++|
T Consensus       132 De~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~-~d~~l~l~~~  200 (231)
T 4a74_A          132 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHS-ATLRVYLRKG  200 (231)
T ss_dssp             ETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------C-CSEEEEEEEC
T ss_pred             CChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhh-ceEEEEEEec
Confidence            9999999984       2     23677777777644 899999999544    47765 6999999865

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.79  E-value=2.2e-22  Score=203.82  Aligned_cols=192  Identities=15%  Similarity=0.089  Sum_probs=111.6

Q ss_pred             CcEEEEEEEEEECCCcccceeee----------EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-CccEEEECCEe
Q 020520           76 PLLQVTGLTAVIAESKQEILKGV----------NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVFKGEN  144 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~v----------sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-~~G~I~~~g~~  144 (325)
                      +.++++||++.|+...+++|+.+          +++++.   +||+||||||||||+++|+|+  ..| ++|.|+++|.+
T Consensus         9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl--~~P~~sG~vt~~g~~   83 (608)
T 3szr_A            9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGV--ALPRGSGIVTRCPLV   83 (608)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSC--C-------CCCSCEE
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCC--CCCCCCCeEEEcCEE
Confidence            36889999999964323455444          366654   999999999999999999998  557 79999999998


Q ss_pred             CCC--CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCC
Q 020520          145 LLE--MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE  222 (325)
Q Consensus       145 i~~--~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  222 (325)
                      +..  .+.....+..++++||++.+++..++.+++.......                         +....        
T Consensus        84 i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~-------------------------~~~~~--------  130 (608)
T 3szr_A           84 LKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI-------------------------AGEGM--------  130 (608)
T ss_dssp             EEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH-------------------------HCSSS--------
T ss_pred             EEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh-------------------------cCCcc--------
Confidence            521  1111111235788999988877667666554432110                         00000        


Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEeCc------CcCCCHHHHHHHHHHHHhccC-C-CcEEEEEeCChhHH--------
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILDEI------DSGLDVDALRDVAKAVNGLLT-P-KNSLLMITHYRRLL--------  286 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLDEP------tsgLD~~~~~~i~~~L~~l~~-~-g~tvIivtHd~~~~--------  286 (325)
                      .+|   ++++.++.+....|+++|+|||      |+|||+..++.+.++++++.+ . +.+++++|||++.+        
T Consensus       131 ~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la  207 (608)
T 3szr_A          131 GIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMA  207 (608)
T ss_dssp             CCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHH
T ss_pred             ccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHH
Confidence            011   1112222223458999999999      999999999999999999643 3 67899999997643        


Q ss_pred             hhh---CCcEEEEEeCCEEEEEcCc
Q 020520          287 EFI---KPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       287 ~~~---~~d~i~vl~~G~iv~~g~~  308 (325)
                      ..+   ....|.|+.++.++..|+.
T Consensus       208 ~~v~~~g~rtI~VlTK~Dlv~~g~~  232 (608)
T 3szr_A          208 QEVDPEGDRTIGILTKPDLVDKGTE  232 (608)
T ss_dssp             HHHCSSCCSEEEEEECGGGSSSSST
T ss_pred             HHHhhcCCceEEEecchhhcCcccH
Confidence            222   1356888888877766654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=3.3e-21  Score=168.12  Aligned_cols=182  Identities=15%  Similarity=0.125  Sum_probs=96.5

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC---CCCCCccEEEECCEeCCCCCHHHH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP---DYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~---~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      +|+++|+++.|+   ..++++  |.+.+|+.++|+|+||||||||++.|+|..   ...|+.|++.+.+.-... .    
T Consensus         3 ~l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~----   72 (210)
T 1pui_A            3 NLNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-D----   72 (210)
T ss_dssp             --------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-T----
T ss_pred             chhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-C----
Confidence            589999999995   367888  899999999999999999999999999962   015677776542210000 0    


Q ss_pred             hhccEEEeccCCccC----CCc--ch-HHHHHHHHHHHhhh------c-CCCCCChHHHHHhHHHHHHhcCCcccccccc
Q 020520          154 SLAGLFMSFQSPVEI----PGV--NN-IDFLHMAYNARRRK------L-GQPEIGPIEFYAYLYPKLERLSMKTDFLNRN  219 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~----~~~--~~-~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  219 (325)
                         .+.+ ...|...    +..  .. ...+...+......      . .......  ....+.+.+...++..-....+
T Consensus        73 ---~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK  146 (210)
T 1pui_A           73 ---GKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTK  146 (210)
T ss_dssp             ---TEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ---CEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEec
Confidence               0000 0111100    000  00 00000000000000      0 0000111  1123344455566542222344


Q ss_pred             CCCCCChHHHHH-HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcE
Q 020520          220 VNEGFSGGERKR-NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNS  275 (325)
Q Consensus       220 ~~~~LSgGqrQR-v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~t  275 (325)
                      .. .+|+||+|| +..+++++.+|+++++|||||++|..+.+++++.|.++..++.|
T Consensus       147 ~D-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          147 AD-KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             GG-GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             cc-CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            44 499999999 89999999999999999999999999999999999988765543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.79  E-value=3.7e-21  Score=179.14  Aligned_cols=153  Identities=13%  Similarity=0.070  Sum_probs=102.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH-H---HH-hhccEEEeccCCccCCCcchHHHHH
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP-E---ER-SLAGLFMSFQSPVEIPGVNNIDFLH  178 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~-~---~~-~~~~i~~~~Q~~~~~~~~~~~~~~~  178 (325)
                      +|++++|+||||||||||+++|+|+  +.|++|+|.+.|.++..... .   .+ .+.++++++|++..++..++.+++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagl--l~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~  178 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ  178 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence            6999999999999999999999998  67899999999998765431 1   11 2345778899987777666666654


Q ss_pred             HHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHH
Q 020520          179 MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA  258 (325)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~  258 (325)
                      .....     +. +.          .+++..|.. +...+    .++..++||++||||++.+|+.++|     .||+.+
T Consensus       179 ~~~~~-----~~-d~----------~llDt~G~~-~~~~~----~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t  232 (304)
T 1rj9_A          179 AMKAR-----GY-DL----------LFVDTAGRL-HTKHN----LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT  232 (304)
T ss_dssp             HHHHH-----TC-SE----------EEECCCCCC-TTCHH----HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred             HHHhC-----CC-CE----------EEecCCCCC-CchHH----HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence            33210     00 00          012223331 11111    1455669999999999999994444     444444


Q ss_pred             HHHHHHHHHhccCC-CcEEEEEeCChh
Q 020520          259 LRDVAKAVNGLLTP-KNSLLMITHYRR  284 (325)
Q Consensus       259 ~~~i~~~L~~l~~~-g~tvIivtHd~~  284 (325)
                      ...+++.++++.+. +.|+|++||+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          233 GQNGLEQAKKFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             CTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence            45556666666543 789999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.79  E-value=9.8e-22  Score=182.79  Aligned_cols=165  Identities=11%  Similarity=0.064  Sum_probs=79.0

Q ss_pred             EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEE
Q 020520           81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFM  160 (325)
Q Consensus        81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~  160 (325)
                      +||++.|++  +.++++++|+|      +|+|+||+|||||+++|+|.. ..|++| |.++|.++.. +. ..  ..+++
T Consensus         2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~-~~~~~g-i~~~g~~~~~-t~-~~--~~~~~   67 (301)
T 2qnr_A            2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD-LYPERV-ISGAAEKIER-TV-QI--EASTV   67 (301)
T ss_dssp             ------------------CEEE------EEEEETTSSHHHHHHHHHC------------------------------CEE
T ss_pred             CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCC-ccCCCC-cccCCcccCC-cc-eE--eeEEE
Confidence            578999964  67999999998      999999999999999999962 457888 8888876643 11 11  23456


Q ss_pred             eccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHh
Q 020520          161 SFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL  240 (325)
Q Consensus       161 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~  240 (325)
                      ++|.......+++.+.........     ..     +....+.+.+.      +..++.+. ++|||||||+.+|||++ 
T Consensus        68 ~~q~~~~~~~ltv~Dt~g~~~~~~-----~~-----e~~~~l~~~l~------~~~~~~~~-~~sgg~rqrv~~ara~~-  129 (301)
T 2qnr_A           68 EIEERGVKLRLTVVDTPGYGDAIN-----CR-----DCFKTIISYID------EQFERYLH-DESGLNRRHIIDNRVHC-  129 (301)
T ss_dssp             EEC---CCEEEEEEEEC---------------------CTTHHHHHH------HHHHHHHH-HHTSSCCTTCCCCCCCE-
T ss_pred             EecCCCcccCcchhhhhhhhhhcC-----cH-----HHHHHHHHHHH------HHHHHHHH-HhCHHhhhhhhhhhhhh-
Confidence            677665554555544432221100     00     00001111111      11223333 49999999999999886 


Q ss_pred             CCCEEEEeCcCcC-CCHHHHHHHHHHHHhccCC-CcEEEEEeCChh
Q 020520          241 GADLAILDEIDSG-LDVDALRDVAKAVNGLLTP-KNSLLMITHYRR  284 (325)
Q Consensus       241 ~p~lLlLDEPtsg-LD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~  284 (325)
                         +|++||||++ ||+...    ++++++.++ +.++|+++||+.
T Consensus       130 ---ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          130 ---CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             ---EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             ---eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence               9999999985 999874    455555543 678999999973

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.78  E-value=9.5e-22  Score=170.99  Aligned_cols=159  Identities=13%  Similarity=0.101  Sum_probs=101.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR  184 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~  184 (325)
                      |++++|+||||||||||+++|+|+  ++ ++| |.++|.+...+..  . ...+++++|+..  ....+..         
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~--~~-~~G-i~~~g~~~~~~~~--~-~~~ig~~~~~~~--g~~~~l~---------   62 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEV--LK-SSG-VPVDGFYTEEVRQ--G-GRRIGFDVVTLS--GTRGPLS---------   62 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHH--HH-HTT-CCCEEEECCEEET--T-SSEEEEEEEETT--SCEEEEE---------
T ss_pred             CCEEEEECCCCChHHHHHHHHHhh--cc-cCC-EEEcCEecchhHh--h-hceEEEEEEecc--cceehhh---------
Confidence            789999999999999999999997  55 889 9999987744321  1 234778888751  1111100         


Q ss_pred             hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH-HHHH---HHHhCCCEEEEeC--cCcCCCHHH
Q 020520          185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN-EILQ---LAVLGADLAILDE--IDSGLDVDA  258 (325)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv-~iAr---aL~~~p~lLlLDE--PtsgLD~~~  258 (325)
                        ...... ..             ... .....+.. ..+|+|||+++ ++++   |++.+|++|||||  |+..+|...
T Consensus        63 --~~~~~~-~~-------------~~~-~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~  124 (189)
T 2i3b_A           63 --RVGLEP-PP-------------GKR-ECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF  124 (189)
T ss_dssp             --ECCCCC-CS-------------SSC-CEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH
T ss_pred             --cccccC-Cc-------------ccc-ccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH
Confidence              000000 00             000 00111222 24999999998 5555   6889999999999  899999988


Q ss_pred             HHHHHHHHHhccCCCcEEE----EEeCChhHHhhhCCcEEEEEeCCEEEEEc
Q 020520          259 LRDVAKAVNGLLTPKNSLL----MITHYRRLLEFIKPTFIHIMEDGRIIKTG  306 (325)
Q Consensus       259 ~~~i~~~L~~l~~~g~tvI----ivtHd~~~~~~~~~d~i~vl~~G~iv~~g  306 (325)
                      .+.+.+++...    .++|    .|+||.. . .+ .|+|..+++|+|+...
T Consensus       125 ~~~l~~~l~~~----~~~ilgti~vsh~~~-~-~~-vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          125 IQAVRQTLSTP----GTIILGTIPVPKGKP-L-AL-VEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             HHHHHHHHHCS----SCCEEEECCCCCSSC-C-TT-HHHHHTTCCSEEEECC
T ss_pred             HHHHHHHHhCC----CcEEEEEeecCCCCc-h-HH-HHHHeecCCcEEEEeC
Confidence            88777777642    3444    3449863 1 12 2455556788887654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.75  E-value=1.1e-19  Score=188.68  Aligned_cols=169  Identities=19%  Similarity=0.147  Sum_probs=103.6

Q ss_pred             CCcEEEEEEEEEECC---CcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH
Q 020520           75 QPLLQVTGLTAVIAE---SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~---~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~  151 (325)
                      .+.+.+++...-.-.   +++.+++|++|+ ++|++++|+||||||||||+|+|+|+. +....|.      .+..    
T Consensus       575 ~~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~-~~~q~G~------~vpa----  642 (800)
T 1wb9_A          575 KPGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA-LMAYIGS------YVPA----  642 (800)
T ss_dssp             SSCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH-HHHTTTC------CBSS----
T ss_pred             CCCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH-HHHhcCc------ccch----
Confidence            345777765311100   235789999999 999999999999999999999999962 1112221      1110    


Q ss_pred             HHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       152 ~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                      ..  ..+++++|   +++.++..++                                       ...... .+|+++++ 
T Consensus       643 ~~--~~i~~~~~---i~~~~~~~d~---------------------------------------l~~~~s-tf~~e~~~-  676 (800)
T 1wb9_A          643 QK--VEIGPIDR---IFTRVGAADD---------------------------------------LASGRS-TFMVEMTE-  676 (800)
T ss_dssp             SE--EEECCCCE---EEEEEC---------------------------------------------------CHHHHHH-
T ss_pred             hc--ccceeHHH---HHhhCCHHHH---------------------------------------HHhhhh-hhhHHHHH-
Confidence            00  11222222   1111111110                                       000111 37777765 


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHH-HHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEE
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDV-AKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv  303 (325)
                      ++.+...+.+|+++|||||++|+|+.....+ ..++..+.+ .|.++|++|||.++.. + +|++..+.+|++.
T Consensus       677 ~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l-~d~~~~v~n~~~~  748 (800)
T 1wb9_A          677 TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-L-PEKMEGVANVHLD  748 (800)
T ss_dssp             HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-H-HHHSTTEEEEEEE
T ss_pred             HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-H-hhhhhceEEEEEE
Confidence            4444556899999999999999998777665 677887766 4889999999998765 4 3554344455443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.75  E-value=5.2e-22  Score=174.17  Aligned_cols=145  Identities=17%  Similarity=0.088  Sum_probs=104.3

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccC--CCcchHHHHHH
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEI--PGVNNIDFLHM  179 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~--~~~~~~~~~~~  179 (325)
                      .++|+++||+||||||||||+++|+|+  +.|                       .+++++|++.++  ..+++.++...
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~--~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~   57 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALART--LGE-----------------------RVALLPMDHYYKDLGHLPLEERLRV   57 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHH--HGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHS
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHH--hCC-----------------------CeEEEecCccccCcccccHHHhcCC
Confidence            578999999999999999999999996  322                       266778887665  33455444322


Q ss_pred             HHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH----HHHHHHHHHHHhCCCEEEEeCcCcC--
Q 020520          180 AYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE----RKRNEILQLAVLGADLAILDEIDSG--  253 (325)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq----rQRv~iAraL~~~p~lLlLDEPtsg--  253 (325)
                      .+       ..+.   ......+.+.++.+++. +..+.+.. .+|+||    +||+++|++++.+|+++++||||++  
T Consensus        58 ~~-------~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~~-~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~  125 (211)
T 3asz_A           58 NY-------DHPD---AFDLALYLEHAQALLRG-LPVEMPVY-DFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLM  125 (211)
T ss_dssp             CT-------TSGG---GBCHHHHHHHHHHHHTT-CCEEECCE-ETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTC
T ss_pred             CC-------CChh---hhhHHHHHHHHHHHHcC-CCcCCCcc-cCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhc
Confidence            11       1110   01123455566777765 34445544 599996    4789999999999999999999999  


Q ss_pred             -----CCHHHHHHHHHHHHhc-cCCCcEEEEEeCCh
Q 020520          254 -----LDVDALRDVAKAVNGL-LTPKNSLLMITHYR  283 (325)
Q Consensus       254 -----LD~~~~~~i~~~L~~l-~~~g~tvIivtHd~  283 (325)
                           ||+.....+.+.+.+. .+.|.|+++++|+.
T Consensus       126 d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          126 DLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence                 9999999999998875 34578999999974

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.73  E-value=6.9e-18  Score=154.63  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=96.2

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHH
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA  180 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~  180 (325)
                      .+++|++++|+||||||||||++.+++.  .  ..|.+ +.|.+...       ...+.|+..+.      .........
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~--~--~~g~~-~~g~~~~~-------~~~v~~~~~e~------~~~~~~~r~   87 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQ--I--AGGPD-LLEVGELP-------TGPVIYLPAED------PPTAIHHRL   87 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHH--H--HTCCC-TTCCCCCC-------CCCEEEEESSS------CHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHH--H--hcCCC-cCCCccCC-------CccEEEEECCC------CHHHHHHHH
Confidence            4789999999999999999999999985  2  24665 33443211       11233332221      111111111


Q ss_pred             HHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc--CCCHHH
Q 020520          181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS--GLDVDA  258 (325)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts--gLD~~~  258 (325)
                      ..     .+. ....    ....+.++.+.+. +..++.+. .||+||+|++   ++++.+|+++|+||||+  ++|...
T Consensus        88 ~~-----~g~-~~~~----~~~~~~~~~l~l~-~~~~~~~~-~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~  152 (279)
T 1nlf_A           88 HA-----LGA-HLSA----EERQAVADGLLIQ-PLIGSLPN-IMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENA  152 (279)
T ss_dssp             HH-----HHT-TSCH----HHHHHHHHHEEEC-CCTTSCCC-TTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred             HH-----HHh-hcCh----hhhhhccCceEEe-ecCCCCcc-cCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCc
Confidence            00     010 0111    1233456677664 34455555 4999998865   68889999999999999  999744


Q ss_pred             ---HHHHHHHHHhccC-CCcEEEEEeCChhHH
Q 020520          259 ---LRDVAKAVNGLLT-PKNSLLMITHYRRLL  286 (325)
Q Consensus       259 ---~~~i~~~L~~l~~-~g~tvIivtHd~~~~  286 (325)
                         ...+++.|+++++ .|.|||+++|+....
T Consensus       153 ~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          153 SGPMAQVIGRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred             hHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence               4888888888864 489999999987654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.72  E-value=6.4e-19  Score=167.35  Aligned_cols=145  Identities=14%  Similarity=0.096  Sum_probs=93.0

Q ss_pred             EEEEEEECCCcccceeeeEE-------EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-ccEEEECCEeCCCCCHHH
Q 020520           81 TGLTAVIAESKQEILKGVNL-------LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-EGSVVFKGENLLEMEPEE  152 (325)
Q Consensus        81 ~~ls~~y~~~~~~iL~~vsl-------~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~  152 (325)
                      .+++++|.......|+++.+       .+.+|++++|+||||||||||+++|+|+  +.|+ .|.|...+.++. +..  
T Consensus        92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e-~~~--  166 (356)
T 3jvv_A           92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIE-FVH--  166 (356)
T ss_dssp             EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCC-SCC--
T ss_pred             cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHH-hhh--
Confidence            45666664333456677665       6788999999999999999999999997  4555 466644332221 100  


Q ss_pred             HhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          153 RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       153 ~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      ...  ..++.|...                                           +.          ..++-.+    
T Consensus       167 ~~~--~~~v~q~~~-------------------------------------------~~----------~~~~~~~----  187 (356)
T 3jvv_A          167 ESK--KCLVNQREV-------------------------------------------HR----------DTLGFSE----  187 (356)
T ss_dssp             CCS--SSEEEEEEB-------------------------------------------TT----------TBSCHHH----
T ss_pred             hcc--ccceeeeee-------------------------------------------cc----------ccCCHHH----
Confidence            000  001111110                                           00          0122222    


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      +||+||.++|++||+||||   |.++.+.+.+.    +..|.+||+++|+.+.+. . +||++.|.
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~~G~~vl~t~H~~~~~~-~-~dRli~l~  244 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLALTA----AETGHLVFGTLHTTSAAK-T-IDRVVDVF  244 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEESCSSHHH-H-HHHHHHTS
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH----HhcCCEEEEEEccChHHH-H-HHHHhhhc
Confidence            9999999999999999999   76665554443    445889999999988774 3 46766553

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.72  E-value=2e-17  Score=141.60  Aligned_cols=77  Identities=23%  Similarity=0.314  Sum_probs=65.7

Q ss_pred             CCChHHHHHHHHHHHHHh----CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE-
Q 020520          223 GFSGGERKRNEILQLAVL----GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM-  297 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl-  297 (325)
                      .||||||||++||++|+.    .|+++||||||+|||+.++..+.++|+++.++ .++|+|||+..... . ||+++.+ 
T Consensus        64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~~~~~-~-ad~i~~v~  140 (173)
T 3kta_B           64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRDVMMA-N-ADKIIGVS  140 (173)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCHHHHT-T-CSEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecHHHHH-h-CCEEEEEE
Confidence            499999999999999975    46999999999999999999999999998654 58999999977654 4 6998754 


Q ss_pred             -eCCEE
Q 020520          298 -EDGRI  302 (325)
Q Consensus       298 -~~G~i  302 (325)
                       .+|..
T Consensus       141 ~~~g~s  146 (173)
T 3kta_B          141 MRDGVS  146 (173)
T ss_dssp             EETTEE
T ss_pred             ecCCEE
Confidence             56753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=2.3e-19  Score=173.66  Aligned_cols=167  Identities=10%  Similarity=0.084  Sum_probs=92.2

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ..+|.++||++.|++  +.++++++|+|      +|+|+||||||||+++|+|+.  .+..|   .+|..+..  .....
T Consensus         9 ~~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~--~~~~~---~~~~~~~~--~~t~~   73 (418)
T 2qag_C            9 EGYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTD--LYSPE---YPGPSHRI--KKTVQ   73 (418)
T ss_dssp             ------CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCC--CCCCC---CCSCC-------CCE
T ss_pred             cCcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCC--CCCCC---CCCcccCC--cccee
Confidence            357999999999964  67999999998      999999999999999999973  33333   12222111  00111


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      ...+++++|.+.++..+++.++........          ....+..+.+.++          .    .++.+++||++|
T Consensus        74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~----------~~~~~~~i~~~i~----------~----~~~~~l~qr~~I  129 (418)
T 2qag_C           74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVD----------NSNCWQPVIDYID----------S----KFEDYLNAESRV  129 (418)
T ss_dssp             EEEEECC------CEEEEEEECC---------------------CHHHHHHHH----------H----HHHHHTTTSCC-
T ss_pred             eeeEEEEEecCCcccceeeeechhhhhhcc----------chhhHHHHHHHHH----------H----HHHHHHHHHHHH
Confidence            124667778776655566655443321100          0001111222221          1    266778899999


Q ss_pred             HHHHHhCCC---EEEEeCcC-cCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020520          235 LQLAVLGAD---LAILDEID-SGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       235 AraL~~~p~---lLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~  285 (325)
                      |||++.+|+   +|++|||| .+||+...    +.++.+.. +.+||+|.|-.+.
T Consensus       130 aRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~Dl  179 (418)
T 2qag_C          130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKADT  179 (418)
T ss_dssp             CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTTS
T ss_pred             HHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcccC
Confidence            999999999   99999999 69998774    33344433 5677777775443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.71  E-value=3.2e-19  Score=169.16  Aligned_cols=147  Identities=18%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             cceeee-EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc----cE-EEECCEeCCCCCHHHHhhccEEEeccCCc
Q 020520           93 EILKGV-NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE----GS-VVFKGENLLEMEPEERSLAGLFMSFQSPV  166 (325)
Q Consensus        93 ~iL~~v-sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~----G~-I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~  166 (325)
                      ..|+.+ ++.|++|++++|+||||||||||++.+++....+|++    |+ |++++++..  .+..     +.+++|.+.
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~-----i~~i~q~~~  190 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPER-----IREIAQNRG  190 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHH-----HHHHHHTTT
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHH-----HHHHHHHcC
Confidence            456666 6899999999999999999999999999973225666    67 888886541  1111     222344432


Q ss_pred             cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH-------
Q 020520          167 EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV-------  239 (325)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~-------  239 (325)
                      +++.                                 .+++.+-+    . +.   .-|.+|+|++.++++++       
T Consensus       191 ~~~~---------------------------------~v~~ni~~----~-~~---~~~~~~~~~l~~~~~~~~~lS~G~  229 (349)
T 1pzn_A          191 LDPD---------------------------------EVLKHIYV----A-RA---FNSNHQMLLVQQAEDKIKELLNTD  229 (349)
T ss_dssp             CCHH---------------------------------HHGGGEEE----E-EC---CSHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             CCHH---------------------------------HHhhCEEE----E-ec---CChHHHHHHHHHHHHHHHHhcccc
Confidence            2110                                 01111111    0 11   12678889999999888       


Q ss_pred             hCCCEEEEeCcCcCCCHHH------------HHHHHHHHHhccC-CCcEEEEEeCChhHHh
Q 020520          240 LGADLAILDEIDSGLDVDA------------LRDVAKAVNGLLT-PKNSLLMITHYRRLLE  287 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tvIivtHd~~~~~  287 (325)
                      .+|++||+||||+++|+..            ...++..|+++++ .+.|||+++|+.....
T Consensus       230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~  290 (349)
T 1pzn_A          230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD  290 (349)
T ss_dssp             SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred             CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence            6899999999999999862            4566667777654 4889999999875443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.65  E-value=1.8e-18  Score=167.09  Aligned_cols=186  Identities=13%  Similarity=0.115  Sum_probs=109.5

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCE--EEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEV--HAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      .+++++ ++.|++  .+ |+++||+|++|++  ++|+||||||||||+++|+|+.          ++|.++....+... 
T Consensus        16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~----------l~g~~~~~~~~~~~-   80 (427)
T 2qag_B           16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK----------FEGEPATHTQPGVQ-   80 (427)
T ss_dssp             -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC----------C-------CCSSCE-
T ss_pred             eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc----------ccCCcCCCCCccce-
Confidence            466677 888864  45 9999999999999  9999999999999999999962          22333222111111 


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-CCcc---cccccc----------C
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-SMKT---DFLNRN----------V  220 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~~----------~  220 (325)
                      ...+++++|++.+++.+++.+++.++...... .....+ .......+.+++... ++..   ...+..          .
T Consensus        81 ~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~-~~~~~i-~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~  158 (427)
T 2qag_B           81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINKE-DSYKPI-VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPT  158 (427)
T ss_dssp             EEEEEEEEEC--CEEEEEEEEEECCCC-CCHH-HHSHHH-HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCC
T ss_pred             EeeEEEEeecCccccccchhhhhhhhhccccc-hhhhHH-HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCC
Confidence            23578889988766666655543221100000 000000 001122333444443 3210   001111          1


Q ss_pred             CCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHh-ccCCCcEEEEEeCC
Q 020520          221 NEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG-LLTPKNSLLMITHY  282 (325)
Q Consensus       221 ~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvIivtHd  282 (325)
                      +..|+-.+   +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.+|.|
T Consensus       159 ~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          159 GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            12366665   7899999999999999999999999999999999986 77779999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.65  E-value=1.1e-16  Score=140.18  Aligned_cols=154  Identities=18%  Similarity=0.147  Sum_probs=96.3

Q ss_pred             ccceeeeEE-EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020520           92 QEILKGVNL-LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG  170 (325)
Q Consensus        92 ~~iL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~  170 (325)
                      .+.|+.+.. .+++|++++|+||||||||||++.|++ .   +..+.++++...  ..+...                  
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~---~~~~v~~i~~~~--~~~~~~------------------   61 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-L---SGKKVAYVDTEG--GFSPER------------------   61 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-H---HCSEEEEEESSC--CCCHHH------------------
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-H---cCCcEEEEECCC--CCCHHH------------------
Confidence            345666654 689999999999999999999999998 1   122333333221  001110                  


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHH--HHHHHHHHHHHhC-CCEEEE
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE--RKRNEILQLAVLG-ADLAIL  247 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGq--rQRv~iAraL~~~-p~lLlL  247 (325)
                           .... .    ...+.   ..       .+.++.+.+         . .+|+++  +|+++.+++++.+ |+++|+
T Consensus        62 -----~~~~-~----~~~~~---~~-------~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~l~~~~~~llii  111 (220)
T 2cvh_A           62 -----LVQM-A----ETRGL---NP-------EEALSRFIL---------F-TPSDFKEQRRVIGSLKKTVDSNFALVVV  111 (220)
T ss_dssp             -----HHHH-H----HTTTC---CH-------HHHHHHEEE---------E-CCTTTSHHHHHHHHHHHHCCTTEEEEEE
T ss_pred             -----HHHH-H----HhcCC---Ch-------HHHhhcEEE---------E-ecCCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence                 0000 0    00010   01       111222211         1 245553  6788888999986 999999


Q ss_pred             eCcCcCCCHHH--------HHHHHHHHHhccCC-CcEEEEEeCChh-------------HHhhhCCcEEEEEeCC
Q 020520          248 DEIDSGLDVDA--------LRDVAKAVNGLLTP-KNSLLMITHYRR-------------LLEFIKPTFIHIMEDG  300 (325)
Q Consensus       248 DEPtsgLD~~~--------~~~i~~~L~~l~~~-g~tvIivtHd~~-------------~~~~~~~d~i~vl~~G  300 (325)
                      ||||+.+|+..        ...+++.|++++++ +.|||+++|...             .+... ||++++|++.
T Consensus       112 D~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~-~d~vi~l~~~  185 (220)
T 2cvh_A          112 DSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYR-CKDILRLDKL  185 (220)
T ss_dssp             ECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHT-SSEEEEEEEC
T ss_pred             cCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeec-CcEEEEEEEe
Confidence            99999999732        34556667777654 889999999865             34554 7999998754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.63  E-value=8.2e-19  Score=150.02  Aligned_cols=140  Identities=19%  Similarity=0.195  Sum_probs=83.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCC---ccEEEECCEeCCCCC---HHHHh--hcc--EEEeccCCccCCCcchHH
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVT---EGSVVFKGENLLEME---PEERS--LAG--LFMSFQSPVEIPGVNNID  175 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~---~G~I~~~g~~i~~~~---~~~~~--~~~--i~~~~Q~~~~~~~~~~~~  175 (325)
                      ++++|+|+||||||||+++|+|+  +.|+   .|.|.++|.++..++   ...++  ..+  +.++.|++.+|  +..  
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~--~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~~--   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI--LRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IRR--   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH--HHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EEE--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH--hhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Eec--
Confidence            58999999999999999999998  5676   899999999866553   12222  223  22567776544  100  


Q ss_pred             HHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHh-cCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEE-------EE
Q 020520          176 FLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER-LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLA-------IL  247 (325)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lL-------lL  247 (325)
                                   .     ..+....+.+.++. +. .   .+..+.+.|||||+||++||||++.+|++.       +=
T Consensus        77 -------------~-----~~~~~a~l~~~i~~~l~-g---~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~  134 (171)
T 2f1r_A           77 -------------V-----SEEEGNDLDWIYERYLS-D---YDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVC  134 (171)
T ss_dssp             -------------C-----CHHHHTCHHHHHHHHTT-T---CSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEEC
T ss_pred             -------------C-----ChhhhhCHHHHHHhhCC-C---CCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEe
Confidence                         0     00001134445554 43 2   233344469999999999999999999873       23


Q ss_pred             eCcCc---CCCHHHHHHHHHHHHhccCCC
Q 020520          248 DEIDS---GLDVDALRDVAKAVNGLLTPK  273 (325)
Q Consensus       248 DEPts---gLD~~~~~~i~~~L~~l~~~g  273 (325)
                      |.|..   -+|....+.+.+.+.+...+|
T Consensus       135 ~~~~~~~~~f~~~~~~~~a~~i~~~~~~~  163 (171)
T 2f1r_A          135 DERVDGHKWFRRDEVERIAEFILSLLREG  163 (171)
T ss_dssp             SSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred             cCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence            55432   234555677788876665555

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.62  E-value=5.4e-17  Score=144.08  Aligned_cols=136  Identities=16%  Similarity=0.213  Sum_probs=84.8

Q ss_pred             eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC--CccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchH
Q 020520           97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV--TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNI  174 (325)
Q Consensus        97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~  174 (325)
                      .-.-..++|++++|+||||||||||+++|+|+  ++|  ..|.|.+.+.+...     ....+++|+||++..|+.+++ 
T Consensus         8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~--~~p~~~~g~v~~ttr~~~~-----~e~~gi~y~fq~~~~f~~~~~-   79 (219)
T 1s96_A            8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKT--QPLYDTQVSVSHTTRQPRP-----GEVHGEHYFFVNHDEFKEMIS-   79 (219)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHH--SCTTTEEECCCEECSCCCT-----TCCBTTTBEECCHHHHHHHHH-
T ss_pred             cccccCCCCcEEEEECCCCCCHHHHHHHHhcc--CCCCceEEEEEecCCCCCc-----ccccCceEEECCHHHHHHHHh-
Confidence            33457899999999999999999999999997  444  68999888765432     112346677887633211110 


Q ss_pred             HHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCC
Q 020520          175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL  254 (325)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgL  254 (325)
                                   .+.              .++.+.    +.    + .+.|-.+++   ++.++..++++|||     |
T Consensus        80 -------------~~~--------------f~E~~~----~~----~-~~yg~~~~~---v~~~l~~G~illLD-----L  115 (219)
T 1s96_A           80 -------------RDA--------------FLEHAE----VF----G-NYYGTSREA---IEQVLATGVDVFLD-----I  115 (219)
T ss_dssp             -------------TTC--------------EEEEEE----ET----T-EEEEEEHHH---HHHHHTTTCEEEEE-----C
T ss_pred             -------------cCH--------------HHHHHH----HH----h-ccCCCCHHH---HHHHHhcCCeEEEE-----E
Confidence                         000              000000    00    0 011111222   34556678999999     9


Q ss_pred             CHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhh
Q 020520          255 DVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF  288 (325)
Q Consensus       255 D~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~  288 (325)
                      |+.+++.+.+.+.    ++.||+++||+++.+..
T Consensus       116 D~~~~~~i~~~l~----~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A          116 DWQGAQQIRQKMP----HARSIFILPPSKIELDR  145 (219)
T ss_dssp             CHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred             CHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence            9999999998875    47899999999987764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.62  E-value=1.2e-19  Score=156.35  Aligned_cols=172  Identities=13%  Similarity=0.003  Sum_probs=102.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHH
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNAR  184 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~  184 (325)
                      |++++|+||||||||||+++|++     +.+|.+.++|.++...       ...++++|........++.+++.......
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   69 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDIINHM-------VVGGYRPPWESDELLALTWKNITDLTVNF   69 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHHHTT-------CCTTCCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccchhhh-------hccccccCccchhHHHHHHHHHHHHHHHH
Confidence            68999999999999999999998     3578999987654211       11223344332222223333332211100


Q ss_pred             hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC--ChHHHHHHHHHH------HHHhCCCEEEEeCcCcCCCH
Q 020520          185 RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF--SGGERKRNEILQ------LAVLGADLAILDEIDSGLDV  256 (325)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L--SgGqrQRv~iAr------aL~~~p~lLlLDEPtsgLD~  256 (325)
                      . ..+...            +++.+.. .... +... .+  |+|++|++.++.      +++.+|+...+|+   +||+
T Consensus        70 ~-~~~~~~------------ild~~~~-~~~~-~~~~-~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~  130 (189)
T 2bdt_A           70 L-LAQNDV------------VLDYIAF-PDEA-EALA-QTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGE  130 (189)
T ss_dssp             H-HTTCEE------------EEESCCC-HHHH-HHHH-HHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CG
T ss_pred             H-hcCCcE------------EEeeccC-HHHH-HHHH-HHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCH
Confidence            0 000000            0010100 0000 1111 24  889888988888      9999999988884   8999


Q ss_pred             HHHHHHHHHHHhccCCCcEEEEEeCC-hhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020520          257 DALRDVAKAVNGLLTPKNSLLMITHY-RRLLEFIKPTFIHIMEDGRIIKTGDASIA  311 (325)
Q Consensus       257 ~~~~~i~~~L~~l~~~g~tvIivtHd-~~~~~~~~~d~i~vl~~G~iv~~g~~~~~  311 (325)
                      ...+. ++.+..+.+.+.++|.+||. ++.+..+ +++|+  ++|+++..|+++..
T Consensus       131 ~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~-~~~i~--~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          131 RCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDI-VKNLK--TNPRFIFCMAGDPL  182 (189)
T ss_dssp             GGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHH-HHHHH--HCGGGSCC------
T ss_pred             HHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHH-HHHHh--hCCcEEEeecCCch
Confidence            88888 88888886667799999998 8888887 58886  99999999987653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.61  E-value=7e-19  Score=167.55  Aligned_cols=163  Identities=17%  Similarity=0.162  Sum_probs=97.6

Q ss_pred             ceeeeEEEEeC--CCEEEEEcCCCccHHHHHHHHhCCCCCCCCc----cEEEEC----CEeCCCCCHHHHhhccEEEecc
Q 020520           94 ILKGVNLLVNE--GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE----GSVVFK----GENLLEMEPEERSLAGLFMSFQ  163 (325)
Q Consensus        94 iL~~vsl~i~~--Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~----G~I~~~----g~~i~~~~~~~~~~~~i~~~~Q  163 (325)
                      +.+.|+++|.+  |+.++|+||||||||||+++|+|+  +.|++    |+|.++    |.++ ........  .+++++|
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl--~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~~--~I~~~~q  231 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV--FNTTSAWEYGREFVFEKLGGDEQ-AMQYSDYP--QMALGHQ  231 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH--TTCEEECCTTHHHHHHSSSSCTT-SSCTTTHH--HHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH--hCCCcchhhHHHHHHhhcCCCcc-cCChhHHH--HHHHHHH
Confidence            45679999999  999999999999999999999998  67888    777653    2222 11111110  0122222


Q ss_pred             CCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCC-ccccccccCCCCCChHHHHHHHHHHHHH-hC
Q 020520          164 SPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM-KTDFLNRNVNEGFSGGERKRNEILQLAV-LG  241 (325)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~LSgGqrQRv~iAraL~-~~  241 (325)
                      ++..+             ..                    ...+.+.+ ..+..+.... .+|+|++||..+++++. .+
T Consensus       232 ~~~~~-------------~~--------------------t~~~nl~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~  277 (365)
T 1lw7_A          232 RYIDY-------------AV--------------------RHSHKIAFIDTDFITTQAF-CIQYEGKAHPFLDSMIKEYP  277 (365)
T ss_dssp             HHHHH-------------HH--------------------HHCSSEEEESSCHHHHHHH-HHHHHSCCCHHHHHHHHHSC
T ss_pred             HHHHH-------------HH--------------------hccCCEEEEeCCchHHHHH-HHHHcCCCCHHHHHHHhhcC
Confidence            21000             00                    00000000 0011111111 25677788888888875 69


Q ss_pred             CCEEEEeC---cC------cCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          242 ADLAILDE---ID------SGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       242 p~lLlLDE---Pt------sgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      |+++||||   |+      .++|+..+..+.+.|.++.+ .+.+||+++|. .....+ ++++.++
T Consensus       278 ~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~-~~~i~~i  341 (365)
T 1lw7_A          278 FDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRY-NQVKAVI  341 (365)
T ss_dssp             CSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHH-HHHHHHH
T ss_pred             CCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHH-HHHHHHH
Confidence            99999999   65      58999999999999988753 37899999985 233344 3444444

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.61  E-value=1.1e-17  Score=159.23  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=103.9

Q ss_pred             EEEEEEEE---ECCCcccce---------eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020520           79 QVTGLTAV---IAESKQEIL---------KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL  146 (325)
Q Consensus        79 ~~~~ls~~---y~~~~~~iL---------~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~  146 (325)
                      ++++++|+   |+..+..+|         +++||.|++|++++|+||||||||||+++|+|+  ++|++|.|.++|..  
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ie~~~--  212 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE--IPFDQRLITIEDVP--  212 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT--SCTTSCEEEEESSS--
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc--CCCCceEEEECCcc--
Confidence            66777777   743123455         999999999999999999999999999999998  77899999998742  


Q ss_pred             CCCHHHHhhccEEEec-cCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCC
Q 020520          147 EMEPEERSLAGLFMSF-QSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFS  225 (325)
Q Consensus       147 ~~~~~~~~~~~i~~~~-Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS  225 (325)
                      .+.... .+..+++++ |++..                                                       .++
T Consensus       213 e~~~~~-~~~~v~~v~~q~~~~-------------------------------------------------------~~~  236 (361)
T 2gza_A          213 ELFLPD-HPNHVHLFYPSEAKE-------------------------------------------------------EEN  236 (361)
T ss_dssp             CCCCTT-CSSEEEEECC---------------------------------------------------------------
T ss_pred             ccCccc-cCCEEEEeecCcccc-------------------------------------------------------ccc
Confidence            221110 112345554 32200                                                       023


Q ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCC
Q 020520          226 GGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG  300 (325)
Q Consensus       226 gGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G  300 (325)
                      ++..+|..|+.++..+|+.+++||+..       .++.+.|..+.....|++.++|+.. +... ++|+..+..|
T Consensus       237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~-~~Rl~~l~~~  302 (361)
T 2gza_A          237 APVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELT-FERLALMVLQ  302 (361)
T ss_dssp             --CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHH-HHHHHHHHTT
T ss_pred             cccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHH-HHHHHHHHhc
Confidence            344578889999999999999999986       2345566666444457888999865 3333 4676666554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.60  E-value=1e-15  Score=136.12  Aligned_cols=151  Identities=13%  Similarity=0.177  Sum_probs=83.5

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC-----CccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHH
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-----TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNID  175 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-----~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~  175 (325)
                      -|++|++++|+||||||||||++.|++....++     ..|.+++++++..  +......                    
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--~~~~~~~--------------------   77 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--RPERLLA--------------------   77 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--CHHHHHH--------------------
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--CHHHHHH--------------------
Confidence            489999999999999999999999999311333     4566676664311  1111000                    


Q ss_pred             HHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH-HHHHHHHH--hCCCEEEEeCcCc
Q 020520          176 FLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR-NEILQLAV--LGADLAILDEIDS  252 (325)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR-v~iAraL~--~~p~lLlLDEPts  252 (325)
                         ..     ...+.   ...       +.++.+.+.        . .++..+... +.-+..++  .+|+++++|||++
T Consensus        78 ---~~-----~~~g~---~~~-------~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~  130 (243)
T 1n0w_A           78 ---VA-----ERYGL---SGS-------DVLDNVAYA--------R-AFNTDHQTQLLYQASAMMVESRYALLIVDSATA  130 (243)
T ss_dssp             ---HH-----HHTTC---CHH-------HHHHTEEEE--------E-CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred             ---HH-----HHcCC---CHH-------HHhhCeEEE--------e-cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence               00     00010   000       112221110        0 145554433 22233333  5899999999999


Q ss_pred             CCCHH-------H-----HHHHHHHHHhccCC-CcEEEEEeCChhHHhh------------------hCCcEEEEEeCC
Q 020520          253 GLDVD-------A-----LRDVAKAVNGLLTP-KNSLLMITHYRRLLEF------------------IKPTFIHIMEDG  300 (325)
Q Consensus       253 gLD~~-------~-----~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~------------------~~~d~i~vl~~G  300 (325)
                      .+|..       .     ...++..|.+++++ |.|||+++|.......                  ..||.+++|++|
T Consensus       131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence            99985       3     34556666666544 8999999997654332                  137999999865

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.59  E-value=1.3e-16  Score=149.84  Aligned_cols=167  Identities=15%  Similarity=0.094  Sum_probs=106.5

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH-----HhhccEEEeccCCccCCCcchHHH
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE-----RSLAGLFMSFQSPVEIPGVNNIDF  176 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~-----~~~~~i~~~~Q~~~~~~~~~~~~~  176 (325)
                      .++|++++|+||||||||||+++|+|+  +.|++|+|.+.|.++......+     .++.++.+++|...+++..++.++
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~  203 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANW--LKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA  203 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence            368999999999999999999999997  6789999999999987655432     234567788888877776677766


Q ss_pred             HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH
Q 020520          177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV  256 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~  256 (325)
                      +.......     . +.        +  .++..|.. +.        -..=..+.-.++|++..++.+++||.+|. .  
T Consensus       204 l~~~~~~~-----~-d~--------v--liDtaG~~-~~--------~~~l~~eL~~i~ral~~de~llvLDa~t~-~--  255 (328)
T 3e70_C          204 IQHAKARG-----I-DV--------V--LIDTAGRS-ET--------NRNLMDEMKKIARVTKPNLVIFVGDALAG-N--  255 (328)
T ss_dssp             HHHHHHHT-----C-SE--------E--EEEECCSC-CT--------TTCHHHHHHHHHHHHCCSEEEEEEEGGGT-T--
T ss_pred             HHHHHhcc-----c-hh--------h--HHhhccch-hH--------HHHHHHHHHHHHHHhcCCCCEEEEecHHH-H--
Confidence            65432110     0 00        0  01122221 00        01122333458999998888888885554 2  


Q ss_pred             HHHHHHHHHHHhccC-CCcEEEEEeCChh---------HHhhhCCcEEEEEeCCEEE
Q 020520          257 DALRDVAKAVNGLLT-PKNSLLMITHYRR---------LLEFIKPTFIHIMEDGRII  303 (325)
Q Consensus       257 ~~~~~i~~~L~~l~~-~g~tvIivtHd~~---------~~~~~~~d~i~vl~~G~iv  303 (325)
                          .+.+.++.+.+ .+.|+|++||.-+         .+... ...|.++..|+.+
T Consensus       256 ----~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~-~~pi~~i~~Ge~v  307 (328)
T 3e70_C          256 ----AIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVI-DAPILFVGVGQGY  307 (328)
T ss_dssp             ----HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHH-TCCEEEEECSSST
T ss_pred             ----HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHH-CCCEEEEeCCCCc
Confidence                44444455542 3789999999532         12222 2346667777654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.59  E-value=1.5e-17  Score=143.05  Aligned_cols=152  Identities=16%  Similarity=0.036  Sum_probs=87.9

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHH
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA  180 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~  180 (325)
                      .+++|++++|+||||||||||+++|+|.    +..|.|.++|.++....   .....+++++|+..  +..++.+++...
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~---~~~~~~~~~~~~~~--~~~~v~~~l~~~   75 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYI---KHGRIDPWLPQSHQ--QNRMIMQIAADV   75 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTC---CSSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhh---hcccccCCccchhh--hhHHHHHHHHHH
Confidence            4789999999999999999999999995    57899999986542111   00111234444432  123344443322


Q ss_pred             HHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccc--cccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHH
Q 020520          181 YNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFL--NRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA  258 (325)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~  258 (325)
                      ...... .+....        +...+..+++. .+.  +..+. .+|+|++||+++||++.++|+++        +|+..
T Consensus        76 ~~~~~~-~~~~~~--------~~~~~~~~~l~-~~~~~~~~~~-~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~  136 (191)
T 1zp6_A           76 AGRYAK-EGYFVI--------LDGVVRPDWLP-AFTALARPLH-YIVLRTTAAEAIERCLDRGGDSL--------SDPLV  136 (191)
T ss_dssp             HHHHHH-TSCEEE--------ECSCCCTTTTH-HHHTTCSCEE-EEEEECCHHHHHHHHHTTCTTSC--------CCHHH
T ss_pred             HHHHhc-cCCeEE--------EeccCcHHHHH-HHHhcCCCeE-EEEecCCHHHHHHHHHhcCCCcc--------CCHHH
Confidence            111000 000000        00000001110 011  12222 49999999999999999999986        68888


Q ss_pred             HHHHHHHHHhccCCCcEEEEEeC
Q 020520          259 LRDVAKAVNGLLTPKNSLLMITH  281 (325)
Q Consensus       259 ~~~i~~~L~~l~~~g~tvIivtH  281 (325)
                      .+.+.+.+..+...+ .+++.|+
T Consensus       137 ~~~~~~~~~~l~~~~-~~~i~t~  158 (191)
T 1zp6_A          137 VADLHSQFADLGAFE-HHVLPVS  158 (191)
T ss_dssp             HHHHHHHTTCCGGGG-GGEEECT
T ss_pred             HHHHHHHHhccCccc-ccEEECC
Confidence            888888887764433 3344554

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.58  E-value=1e-14  Score=139.03  Aligned_cols=73  Identities=26%  Similarity=0.311  Sum_probs=64.3

Q ss_pred             CCChHHHHHH------HHHHHHHhC-CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEE
Q 020520          223 GFSGGERKRN------EILQLAVLG-ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIH  295 (325)
Q Consensus       223 ~LSgGqrQRv------~iAraL~~~-p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~  295 (325)
                      .|||||+||+      ++|++|+.+ |++|||||||++||+..+..+.+.|.++.+ +.+||+|||+++. ... +|+++
T Consensus       280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~~-~~~-~d~~~  356 (371)
T 3auy_A          280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHREL-EDV-ADVII  356 (371)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGGG-GGG-CSEEE
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHHH-Hhh-CCEEE
Confidence            5999999988      567899999 999999999999999999999999999754 4689999999874 455 69998


Q ss_pred             EEe
Q 020520          296 IME  298 (325)
Q Consensus       296 vl~  298 (325)
                      +|+
T Consensus       357 ~l~  359 (371)
T 3auy_A          357 NVK  359 (371)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.56  E-value=2.1e-18  Score=155.14  Aligned_cols=150  Identities=15%  Similarity=0.080  Sum_probs=93.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHh---CCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHH
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLV---GHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMA  180 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~---Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~  180 (325)
                      ++++++|+||||||||||+++|+   |+  ..++.|+|.++|.+..  .....   .+..++|+..+++..++.+++...
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~--~~~~~G~i~~~~~~~~--~~~~~---~i~~~~~~~~~~~~~~v~~~l~~~   98 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGL--QHLSSGHFLRENIKAS--TEVGE---MAKQYIEKSLLVPDHVITRLMMSE   98 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCC--CCEEHHHHHHHHHHTT--CHHHH---HHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCC--eEecHHHHHHHHHhcC--ChHHH---HHHHHHHcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999999   97  5688999988765421  11111   122335666666655666655432


Q ss_pred             HHH-Hhh---hcCCCCCChHHHHHhHHHHH--HhcCC-----------ccccccccCCCCCChHHHHHHHHHHHH-HhCC
Q 020520          181 YNA-RRR---KLGQPEIGPIEFYAYLYPKL--ERLSM-----------KTDFLNRNVNEGFSGGERKRNEILQLA-VLGA  242 (325)
Q Consensus       181 ~~~-~~~---~~~~~~~~~~~~~~~~~~~l--~~~~l-----------~~~~~~~~~~~~LSgGqrQRv~iAraL-~~~p  242 (325)
                      ... ...   ..+.+. .. .   .+....  ..+++           .....++.+. .|||    |+   +|+ +.+|
T Consensus        99 l~~~~~~~~il~g~~~-~~-~---~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~-~lSg----rv---~al~~~~P  165 (246)
T 2bbw_A           99 LENRRGQHWLLDGFPR-TL-G---QAEALDKICEVDLVISLNIPFETLKDRLSRRWIH-PPSG----RV---YNLDFNPP  165 (246)
T ss_dssp             HHTCTTSCEEEESCCC-SH-H---HHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE-TTTT----EE---EETTTSCC
T ss_pred             HHhcCCCeEEEECCCC-CH-H---HHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCc-CCCC----Cc---cccccCCC
Confidence            210 000   001111 11 1   111111  11220           0122345554 4999    66   778 9999


Q ss_pred             CEEEEe----CcCcCCCHHHHHHHHHHHHhccCCC
Q 020520          243 DLAILD----EIDSGLDVDALRDVAKAVNGLLTPK  273 (325)
Q Consensus       243 ~lLlLD----EPtsgLD~~~~~~i~~~L~~l~~~g  273 (325)
                      ++++||    |||++||..+++.+.+.|+++.+++
T Consensus       166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~  200 (246)
T 2bbw_A          166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA  200 (246)
T ss_dssp             SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence            999999    9999999999999999998886543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.55  E-value=1.2e-15  Score=145.68  Aligned_cols=118  Identities=12%  Similarity=0.119  Sum_probs=82.7

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCC-ccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcc
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT-EGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN  172 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~  172 (325)
                      +|++++  +++|++++|+||||||||||+++|+|+  +.|+ +|+|.+.|.++. +.    ....+++++|..       
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e-~~----~~~~~~~v~Q~~-------  190 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIE-YV----FKHKKSIVNQRE-------  190 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCC-SC----CCCSSSEEEEEE-------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHh-hh----hccCceEEEeee-------
Confidence            566655  789999999999999999999999997  5666 899977665442 10    011223333421       


Q ss_pred             hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc
Q 020520          173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS  252 (325)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts  252 (325)
                                                          +++.       +. .|      +.+|+++|..+|++|++|||+ 
T Consensus       191 ------------------------------------~g~~-------~~-~~------~~~l~~~L~~~pd~illdE~~-  219 (372)
T 2ewv_A          191 ------------------------------------VGED-------TK-SF------ADALRAALREDPDVIFVGEMR-  219 (372)
T ss_dssp             ------------------------------------BTTT-------BS-CS------HHHHHHHTTSCCSEEEESCCC-
T ss_pred             ------------------------------------cCCC-------HH-HH------HHHHHHHhhhCcCEEEECCCC-
Confidence                                                1111       11 25      469999999999999999999 


Q ss_pred             CCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          253 GLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       253 gLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                        |+++...+   ++.. ..|.+|+.++|+.+
T Consensus       220 --d~e~~~~~---l~~~-~~g~~vi~t~H~~~  245 (372)
T 2ewv_A          220 --DLETVETA---LRAA-ETGHLVFGTLHTNT  245 (372)
T ss_dssp             --SHHHHHHH---HHHH-TTTCEEEECCCCCS
T ss_pred             --CHHHHHHH---HHHH-hcCCEEEEEECcch
Confidence              77665443   4333 45789999999865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.54  E-value=7.8e-15  Score=138.96  Aligned_cols=139  Identities=17%  Similarity=0.166  Sum_probs=91.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCC-CCccEEEEC-CEeCCCCCHHHHhhccEEEeccCCccCCCc
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYE-VTEGSVVFK-GENLLEMEPEERSLAGLFMSFQSPVEIPGV  171 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~-p~~G~I~~~-g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~  171 (325)
                      -++++++. .+|++++|+||||||||||+|+|+|+  .. |.+|+|.++ |....     ......+++++|+..+++..
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~--~~~~~~G~I~~~~G~g~~-----tt~~~~i~~v~q~~~l~dtp  276 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGL--QNEILTNDVSNVSGLGQH-----TTTAARLYHFPHGGDVIDSP  276 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCC--SSCCCCC------------------CCCEEEECTTSCEEEECH
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcc--ccccccCCccccCCCCcc-----ceEEEEEEEECCCCEecCcc
Confidence            46666664 48999999999999999999999997  56 899999987 65432     11223578889988776665


Q ss_pred             chHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcC
Q 020520          172 NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID  251 (325)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPt  251 (325)
                      ++.++            +.......+....+.++++.+++. ++.+..+.+ || ||+||++||+++             
T Consensus       277 gv~e~------------~l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~-lS-G~~~r~ala~gl-------------  328 (358)
T 2rcn_A          277 GVREF------------GLWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDA-DP-GCAIREAVENGA-------------  328 (358)
T ss_dssp             HHHTC------------CCCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSS-CT-TCHHHHHHHHTS-------------
T ss_pred             cHHHh------------hhcCCCHHHHHHHHHHHHHHcCCc-hhcCCCccc-CC-HHHHHHHHHhcC-------------
Confidence            55442            111233444455667778888885 567777654 99 999999999874             


Q ss_pred             cCCCHHHHHHHHHHHHhcc
Q 020520          252 SGLDVDALRDVAKAVNGLL  270 (325)
Q Consensus       252 sgLD~~~~~~i~~~L~~l~  270 (325)
                        +++.-.+...+++.++.
T Consensus       329 --i~~~R~~~y~~l~~e~~  345 (358)
T 2rcn_A          329 --IAETRFENYHRILESMA  345 (358)
T ss_dssp             --SCHHHHHHHHHHHHHHC
T ss_pred             --CCHHHHHHHHHHHHHHH
Confidence              35555555556666654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.54  E-value=5e-18  Score=158.86  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=92.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCC------CCCCccEEEECCEeCCCCCHH---------------HHhhccEEEe---
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPD------YEVTEGSVVFKGENLLEMEPE---------------ERSLAGLFMS---  161 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~------~~p~~G~I~~~g~~i~~~~~~---------------~~~~~~i~~~---  161 (325)
                      ++++|+|+||||||||+|.|.|+..      +.|+.|+|.++|.++......               ... ..+.++   
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~-~~l~~l~~~   83 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELE-DALLDLLDN   83 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHH-HHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHH-HHHHHHHhH
Confidence            5899999999999999999999720      167999999999987654210               000 112222   


Q ss_pred             ccCCccCCCcchHHHHHHHHHHH-hhhc-CCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH
Q 020520          162 FQSPVEIPGVNNIDFLHMAYNAR-RRKL-GQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV  239 (325)
Q Consensus       162 ~Q~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~  239 (325)
                      +|++.+++..++.++...+.... ...+ ...   .......+...+..+++. ++.++..  +||+||+||+..+++++
T Consensus        84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~---~~~~~~~l~~~l~~vd~~-~~~~~~~--~ls~g~~Q~~~ad~ill  157 (318)
T 1nij_A           84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHE---VLCQRYLLDGVIALVDAV-HADEQMN--QFTIAQSQVGYADRILL  157 (318)
T ss_dssp             HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSH---HHHHHEEEEEEEEEEETT-THHHHHH--HCHHHHHHHHTCSEEEE
T ss_pred             HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCc---cccCeEEECCEEEEEEHH-HHHHHHh--hchHHHHHHHhCCEEEE
Confidence            34443323333222211100000 0000 000   000000011112222332 2222222  38999999999999999


Q ss_pred             hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      .+|+++  |||         +.+.+.|+++. .+.+|+++||+...+
T Consensus       158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~  192 (318)
T 1nij_A          158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDL  192 (318)
T ss_dssp             ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCG
T ss_pred             ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCH
Confidence            999987  998         77788888875 578999999964333

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.54  E-value=8.9e-18  Score=141.77  Aligned_cols=87  Identities=17%  Similarity=0.059  Sum_probs=68.1

Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEE
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLF  159 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~  159 (325)
                      .+++++.|+  ++.+++++||+|++|++++|+||||||||||+|+|+|+  . |++|+|.++|.++...  ...  ..  
T Consensus        10 ~~~~~~~~g--~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~--l-~~~G~V~~~g~~i~~~--~~~--~~--   78 (158)
T 1htw_A           10 DEFSMLRFG--KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG--I-GHQGNVKSPTYTLVEE--YNI--AG--   78 (158)
T ss_dssp             SHHHHHHHH--HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH--T-TCCSCCCCCTTTCEEE--EEE--TT--
T ss_pred             CHHHHHHHH--HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh--C-CCCCeEEECCEeeeee--ccC--CC--
Confidence            345666674  35789999999999999999999999999999999997  5 8999999999776421  111  12  


Q ss_pred             EeccCCccCCCcchHHHHH
Q 020520          160 MSFQSPVEIPGVNNIDFLH  178 (325)
Q Consensus       160 ~~~Q~~~~~~~~~~~~~~~  178 (325)
                      +++|++.++ .+++.+++.
T Consensus        79 ~~~q~~~l~-~ltv~e~l~   96 (158)
T 1htw_A           79 KMIYHFDLY-RLADPEELE   96 (158)
T ss_dssp             EEEEEEECT-TCSCTTHHH
T ss_pred             cceeccccc-cCCcHHHHH
Confidence            467888777 778766653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.51  E-value=5.2e-16  Score=152.06  Aligned_cols=158  Identities=14%  Similarity=0.107  Sum_probs=98.6

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH----HHH-hhccEEEeccCCccCC
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP----EER-SLAGLFMSFQSPVEIP  169 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~----~~~-~~~~i~~~~Q~~~~~~  169 (325)
                      -+++||++.+|++++|+|+||||||||+++|+|+  +.+++|+|.++|.+......    ..+ .+.++++++|++..++
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p  360 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ--FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS  360 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH--hhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence            4689999999999999999999999999999997  56889999998877643211    111 2345788899876666


Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH-hCC-CEEEE
Q 020520          170 GVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV-LGA-DLAIL  247 (325)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~-~~p-~lLlL  247 (325)
                      ..++.+++.....   .  +. +.        +  +++..|....  +.    .|-.-.+|++.+++++. ..| ++||.
T Consensus       361 ~~tV~e~l~~a~~---~--~~-Dv--------V--LIDTaGrl~~--~~----~lm~EL~kiv~iar~l~~~~P~evLLv  418 (503)
T 2yhs_A          361 ASVIFDAIQAAKA---R--NI-DV--------L--IADTAGRLQN--KS----HLMEELKKIVRVMKKLDVEAPHEVMLT  418 (503)
T ss_dssp             HHHHHHHHHHHHH---T--TC-SE--------E--EECCCCSCCC--HH----HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred             HHHHHHHHHHHHh---c--CC-CE--------E--EEeCCCccch--hh----hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence            5666666544321   0  00 00        0  0122222100  00    01123357888888764 456 45656


Q ss_pred             eCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020520          248 DEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH  281 (325)
Q Consensus       248 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH  281 (325)
                      .+||+|.|....   .+.+++  .-+.|.||+||
T Consensus       419 LDattGq~al~~---ak~f~~--~~~itgvIlTK  447 (503)
T 2yhs_A          419 IDASTGQNAVSQ---AKLFHE--AVGLTGITLTK  447 (503)
T ss_dssp             EEGGGTHHHHHH---HHHHHH--HTCCSEEEEEC
T ss_pred             ecCcccHHHHHH---HHHHHh--hcCCCEEEEEc
Confidence            668988665422   222222  12678899999

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.51  E-value=3e-18  Score=161.66  Aligned_cols=185  Identities=11%  Similarity=0.029  Sum_probs=114.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH---HHH
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP---EER  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~---~~~  153 (325)
                      +++++++++.|+  .+.+|++++|++.+|++++|+|+||||||||+++|+|+  +.|++|+|.+.|.++.....   ...
T Consensus        29 ~ie~~~~~~~~~--~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~--~~~~~g~v~i~~~d~~~~~~~~~~~~  104 (337)
T 2qm8_A           29 LAESRRADHRAA--VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL--LTAAGHKVAVLAVDPSSTRTGGSILG  104 (337)
T ss_dssp             HHTCSSHHHHHH--HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECGGGGSSCCCSSC
T ss_pred             HHeeCCcccccC--hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh--hhhCCCEEEEEEEcCcccccccchHH
Confidence            466788888885  35799999999999999999999999999999999997  56889999999988643211   000


Q ss_pred             hhccEEEeccCCccCCCcc------------hHHHHHHH-------------------HHHHhh-h----cCCCCCChH-
Q 020520          154 SLAGLFMSFQSPVEIPGVN------------NIDFLHMA-------------------YNARRR-K----LGQPEIGPI-  196 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~------------~~~~~~~~-------------------~~~~~~-~----~~~~~~~~~-  196 (325)
                      .+..+++++|++..+...+            ..+.+...                   ...... .    .-....... 
T Consensus       105 ~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~  184 (337)
T 2qm8_A          105 DKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDEL  184 (337)
T ss_dssp             CGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC----
T ss_pred             HhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccH
Confidence            1123567788876654211            11111000                   000000 0    000000000 


Q ss_pred             H-HHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHh------CCCEEEEeCcCcCCCHHHHHHHHHHHHhc
Q 020520          197 E-FYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVL------GADLAILDEIDSGLDVDALRDVAKAVNGL  269 (325)
Q Consensus       197 ~-~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l  269 (325)
                      + ....+.+....+.+  +..|......+|+|++|++..|++++.      +|++++    ||++|......+++.|.++
T Consensus       185 ~~i~~~i~~~~~ivvl--NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          185 QGIKKGIFELADMIAV--NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             --CCTTHHHHCSEEEE--ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhccccEEEE--EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence            0 00011111112222  112211112379999999999999987      688876    9999999999999999886


Q ss_pred             cC
Q 020520          270 LT  271 (325)
Q Consensus       270 ~~  271 (325)
                      ..
T Consensus       259 ~~  260 (337)
T 2qm8_A          259 RS  260 (337)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.49  E-value=2.2e-14  Score=122.45  Aligned_cols=45  Identities=20%  Similarity=0.237  Sum_probs=40.0

Q ss_pred             HhCCCEEEEeCcCc-CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 020520          239 VLGADLAILDEIDS-GLDVDALRDVAKAVNGLLTPKNSLLMITHYR  283 (325)
Q Consensus       239 ~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvIivtHd~  283 (325)
                      +.+|++||||||++ ++|+..++.+.+++.+..++|+++|++||..
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            45999999999995 9999999999999988876788999999975

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.48  E-value=4.3e-17  Score=161.64  Aligned_cols=175  Identities=13%  Similarity=0.067  Sum_probs=104.6

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEec----------
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSF----------  162 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~----------  162 (325)
                      .+++++++.+++|+.++|+||||||||||+++|+|+  ++|++|.|.+.|.+-.....    ...+.+..          
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~--i~~~~giitied~~E~~~~~----~~~v~~~~r~~~~~~~~~  321 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF--IPPDAKVVSIEDTREIKLYH----ENWIAEVTRTGMGEGEID  321 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG--SCTTCCEEEEESSCCCCCCC----SSEEEEECBCCSSSCCBC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--CCCCCCEEEEcCcccccCCC----CCeEEEEeecccccCCcC
Confidence            468899999999999999999999999999999998  67899999998865222110    01122222          


Q ss_pred             ----------cCCc--cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-----CCcccc---cc---cc
Q 020520          163 ----------QSPV--EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-----SMKTDF---LN---RN  219 (325)
Q Consensus       163 ----------Q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~l~~~~---~~---~~  219 (325)
                                |+|.  ++..++..+..... ....  .+....... ....+.++++++     ++....   ++   ..
T Consensus       322 ~~~~l~~~LR~~PD~iivgEir~~E~~~~l-~a~~--tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~  397 (511)
T 2oap_1          322 MYDLLRAALRQRPDYIIVGEVRGREAQTLF-QAMS--TGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALVQ  397 (511)
T ss_dssp             HHHHHHTTGGGCCSEEEESCCCSTHHHHHH-HHHH--TTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE
T ss_pred             HHHHHHHhhccCCCeEEeCCcCHHHHHHHH-Hhhc--CCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEEE
Confidence                      2221  11223333322211 1111  010000000 000112222322     221111   11   11


Q ss_pred             CCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEE--EeCChhHHhhhC
Q 020520          220 VNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLM--ITHYRRLLEFIK  290 (325)
Q Consensus       220 ~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIi--vtHd~~~~~~~~  290 (325)
                      .. .+|+||+||+++|.          + | |+|||+.....+++.|.++.+++.|+++  +||+++.+...+
T Consensus       398 ~~-~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~  457 (511)
T 2oap_1          398 TM-WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL  457 (511)
T ss_dssp             EE-EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred             EE-EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence            11 37999999987752          2 7 9999999888888888888777889875  899999887664

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.47  E-value=1.6e-14  Score=120.38  Aligned_cols=43  Identities=16%  Similarity=0.276  Sum_probs=35.7

Q ss_pred             HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcE-EEEEeCC
Q 020520          239 VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNS-LLMITHY  282 (325)
Q Consensus       239 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~t-vIivtHd  282 (325)
                      +.+|++|++|||++ +|...++.+.+++.++.++|++ +|++||.
T Consensus        81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence            56899999999998 6666688999999988766777 8888884

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.46  E-value=5.3e-14  Score=135.37  Aligned_cols=60  Identities=12%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             hCCCEEEEeCcCcCCCHHHH------------HHHHHHHHhccCC-CcEEEEEeCCh-------------------hHHh
Q 020520          240 LGADLAILDEIDSGLDVDAL------------RDVAKAVNGLLTP-KNSLLMITHYR-------------------RLLE  287 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~------------~~i~~~L~~l~~~-g~tvIivtHd~-------------------~~~~  287 (325)
                      .+|+++++|||++.+|....            ..+++.|++++++ |.|||+|+|..                   ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            47999999999999997533            5678888888755 89999999982                   2234


Q ss_pred             hhCCcEEEEEeCC
Q 020520          288 FIKPTFIHIMEDG  300 (325)
Q Consensus       288 ~~~~d~i~vl~~G  300 (325)
                      .. +|.+++|+++
T Consensus       352 ~~-ad~vl~L~~~  363 (400)
T 3lda_A          352 YS-STTRLGFKKG  363 (400)
T ss_dssp             HH-CSEEEEEEEC
T ss_pred             Hh-cceEEEEEec
Confidence            44 6888888765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.46  E-value=5.1e-15  Score=143.11  Aligned_cols=146  Identities=17%  Similarity=0.143  Sum_probs=85.6

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCC---------CCCCccEEEECCEeCCCCCHHHHhhccEEEeccCC
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPD---------YEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP  165 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~  165 (325)
                      -++++|+++.|+.++|+|+||||||||+++|+|...         +.|+.|.|.+++.            . -..+.+.|
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~------------~-~~~l~Dtp  213 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE------------E-RFTLADIP  213 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS------------C-EEEEEECC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc------------c-eEEEEecc
Confidence            478999999999999999999999999999999610         1222333333220            0 01122333


Q ss_pred             ccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH---hHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC
Q 020520          166 VEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA---YLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA  242 (325)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p  242 (325)
                      .+......  +           .   ... .....   ++..++..+++.    .+.+. +||+||+|++++|++|+..|
T Consensus       214 Gli~~a~~--~-----------~---~L~-~~fl~~~era~~lL~vvDls----~~~~~-~ls~g~~el~~la~aL~~~P  271 (416)
T 1udx_A          214 GIIEGASE--G-----------K---GLG-LEFLRHIARTRVLLYVLDAA----DEPLK-TLETLRKEVGAYDPALLRRP  271 (416)
T ss_dssp             CCCCCGGG--S-----------C---CSC-HHHHHHHTSSSEEEEEEETT----SCHHH-HHHHHHHHHHHHCHHHHHSC
T ss_pred             ccccchhh--h-----------h---hhh-HHHHHHHHHHHhhhEEeCCc----cCCHH-HHHHHHHHHHHHhHHhhcCC
Confidence            22211000  0           0   000 00000   011112222321    22232 49999999999999999999


Q ss_pred             CEEEEeCcCcCCCHHHHHHHHHHHHh-ccCCCcEEEEEe
Q 020520          243 DLAILDEIDSGLDVDALRDVAKAVNG-LLTPKNSLLMIT  280 (325)
Q Consensus       243 ~lLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvIivt  280 (325)
                      .+|++    +.+|.... ..++.+.+ +.+.+.+++++|
T Consensus       272 ~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iS  305 (416)
T 1udx_A          272 SLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVS  305 (416)
T ss_dssp             EEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECC
T ss_pred             EEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEE
Confidence            99999    99999766 33444433 344566777666

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.46  E-value=1.1e-13  Score=130.05  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=73.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhC-CCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG-HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARR  185 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G-l~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~  185 (325)
                      .+.|.||||+|||||+++|+| +  +.|+.|.+.++|.+.......   ...+++++|.+.+......            
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l--~~~~~g~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------  100 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESI--FGPGVYRLKIDVRQFVTASNR---KLELNVVSSPYHLEITPSD------------  100 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH--SCTTCCC---------------------CCEECSSEEEECCC-------------
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH--cCCCCCeEEecceeecccccc---cceeeeecccceEEecHhh------------
Confidence            389999999999999999999 6  578899999999775432111   2234555665532110000            


Q ss_pred             hhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH
Q 020520          186 RKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA  265 (325)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~  265 (325)
                        .+..  ........+.++....++.     ...  .|||           +..+|+++|+|||++ ||......+++.
T Consensus       101 --~~~~--~~~~~~~~i~~~~~~~~~~-----~~~--~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~  157 (354)
T 1sxj_E          101 --MGNN--DRIVIQELLKEVAQMEQVD-----FQD--SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRT  157 (354)
T ss_dssp             -----C--CHHHHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHH
T ss_pred             --cCCc--chHHHHHHHHHHHHhcccc-----ccc--cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHH
Confidence              0000  0001111122221222221     111  2676           778999999999999 999999999999


Q ss_pred             HHhccCCCcEEEEEeCChhH
Q 020520          266 VNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       266 L~~l~~~g~tvIivtHd~~~  285 (325)
                      |.+.. .+.++|++||++..
T Consensus       158 le~~~-~~~~~Il~t~~~~~  176 (354)
T 1sxj_E          158 MEKYS-KNIRLIMVCDSMSP  176 (354)
T ss_dssp             HHHST-TTEEEEEEESCSCS
T ss_pred             HHhhc-CCCEEEEEeCCHHH
Confidence            99874 46799999998653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.40  E-value=1.2e-14  Score=134.35  Aligned_cols=130  Identities=15%  Similarity=0.045  Sum_probs=77.9

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHH
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYN  182 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~  182 (325)
                      .++.+++|+|++|||||||++.|.++  +.+ .|      .        .  ...+.+++|+..+++. +..+++.....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~--l~~-~g------~--------~--~~~~~iv~~D~f~~~~-~~~~~l~~~~~   88 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH--LME-KY------G--------G--EKSIGYASIDDFYLTH-EDQLKLNEQFK   88 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH--HHH-HH------G--------G--GSCEEEEEGGGGBCCH-HHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--hhh-cC------C--------C--CceEEEeccccccCCh-HHHHHHhcccc
Confidence            35789999999999999999999997  322 22      0        0  1224455898877653 34444332210


Q ss_pred             --HHhhhcCCCCCChHHHHHhHHHHHHhcCCcc------ccccccCCCCCChHHHHHHHHH--HHHHhCCCEEEEeCcCc
Q 020520          183 --ARRRKLGQPEIGPIEFYAYLYPKLERLSMKT------DFLNRNVNEGFSGGERKRNEIL--QLAVLGADLAILDEIDS  252 (325)
Q Consensus       183 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~~LSgGqrQRv~iA--raL~~~p~lLlLDEPts  252 (325)
                        ......+.+....   ...+.+.++.+....      ..........+||||+||+++|  +++  +|+|||+||||+
T Consensus        89 ~~~l~~~~g~p~a~d---~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~  163 (290)
T 1odf_A           89 NNKLLQGRGLPGTHD---MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFL  163 (290)
T ss_dssp             TCGGGSSSCSTTSBC---HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESST
T ss_pred             ccchhhhccCcchhH---HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccc
Confidence              0000111222211   233455566554321      0001111235999999999997  555  999999999999


Q ss_pred             CCCHH
Q 020520          253 GLDVD  257 (325)
Q Consensus       253 gLD~~  257 (325)
                      ++|+.
T Consensus       164 ~ld~~  168 (290)
T 1odf_A          164 GFNPI  168 (290)
T ss_dssp             TCCCC
T ss_pred             cCCcc
Confidence            99985

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.38  E-value=1.4e-16  Score=154.22  Aligned_cols=152  Identities=13%  Similarity=0.148  Sum_probs=90.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH--HHh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE--ERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~--~~~  154 (325)
                      .++++++++.|+  ...+|+++ +. .+|++++|+||||||||||+++|+|+  +.|++|+|.+.|.++......  +..
T Consensus       143 ~~~l~~Lg~~~~--~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~--l~~~~g~I~~~ed~ie~~~~~~~q~~  216 (418)
T 1p9r_A          143 RLDLHSLGMTAH--NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQE--LNSSERNILTVEDPIEFDIDGIGQTQ  216 (418)
T ss_dssp             CCCGGGSCCCHH--HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHH--HCCTTSCEEEEESSCCSCCSSSEEEE
T ss_pred             CCCHHHcCCCHH--HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhh--cCCCCCEEEEecccchhccCCcceEE
Confidence            344555555543  23467777 43 78999999999999999999999997  567899999988776421100  000


Q ss_pred             -hccEEEec---------cCCccC--CC----cchHHHHHHHHHHHh--hhcCCCCCChHHHHHhHHHHHHhcCCccccc
Q 020520          155 -LAGLFMSF---------QSPVEI--PG----VNNIDFLHMAYNARR--RKLGQPEIGPIEFYAYLYPKLERLSMKTDFL  216 (325)
Q Consensus       155 -~~~i~~~~---------Q~~~~~--~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  216 (325)
                       ...+++.|         |+|..+  ..    .++.+++........  ......  ...+    +.+.+..+++.. ..
T Consensus       217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~--~~~~----~i~rL~~lgl~~-~~  289 (418)
T 1p9r_A          217 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN--TAVG----AVTRLRDMGIEP-FL  289 (418)
T ss_dssp             CBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCS--SSHH----HHHHHHHHTCCH-HH
T ss_pred             EccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchh--hHHH----HHHHHHHcCCcH-HH
Confidence             01122333         777642  32    244444433211000  000111  1111    223466677753 22


Q ss_pred             cccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 020520          217 NRNVNEGFSGGERKRNEILQLAVLGADLAI  246 (325)
Q Consensus       217 ~~~~~~~LSgGqrQRv~iAraL~~~p~lLl  246 (325)
                        .+. .|||||+||  |||+|+.+|++..
T Consensus       290 --~~~-~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          290 --ISS-SLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             --HHH-HEEEEEEEE--EEEEECTTTCEEE
T ss_pred             --HHH-HHHHHHHHH--hhhhhcCCCCccC
Confidence              233 599999999  9999999999876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.36  E-value=7.9e-16  Score=134.87  Aligned_cols=42  Identities=33%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCC---CccEEEECCEeC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV---TEGSVVFKGENL  145 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p---~~G~I~~~g~~i  145 (325)
                      .++|++++|+||||||||||+++|+|+  +.|   ..|.|.++|..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~--~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAA--LSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHH--HHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH--HhhcCCceEEEecCCCcC
Confidence            478999999999999999999999997  443   467777776544

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.35  E-value=3.4e-14  Score=131.89  Aligned_cols=128  Identities=12%  Similarity=-0.022  Sum_probs=78.2

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEE---CCEeCCCCCHHHHhhccEEEeccCCccC-----CCcc
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF---KGENLLEMEPEERSLAGLFMSFQSPVEI-----PGVN  172 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~i~~~~Q~~~~~-----~~~~  172 (325)
                      ++.+|++++|+||||||||||+|+|+ +  ..|++|+|.+   +|+++..... ......+++++|+|.+.     +.++
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~--~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt  236 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-G--EELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVK  236 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-S--CCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-H--hhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCC
Confidence            44579999999999999999999999 7  6789999999   8988765321 11112467889998543     4566


Q ss_pred             hHHHHHHHHH----HHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          173 NIDFLHMAYN----ARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       173 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      + +++...+.    ......+...  ..+...++.++++.+++.....++.+. .|||.+++++.|||
T Consensus       237 ~-e~l~~~f~~~~~~~c~~~~~~~--~~e~~~~v~~~l~~~~L~~~~~~~~~~-~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          237 P-REVRNYFREFLRYQCKYPDCTH--TNEPGCAVKEAVKNGEISCERYKSYLK-IIKVYLEEIKELCR  300 (302)
T ss_dssp             G-GGGGGGCGGGHHHHHHSTTCCS--SSCTTCHHHHHHHTTSSCHHHHHHHHH-HTTCCCTTHHHHSS
T ss_pred             H-HHHHHHHHHHHHccCCCCCCCC--CCCCCCHHHHHHHcCCCCHHHHHHHHH-HHHHHHHHHHHHhc
Confidence            6 44421111    0000011000  011123467789999996435566665 49998899999986

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.34  E-value=8.5e-16  Score=147.36  Aligned_cols=177  Identities=15%  Similarity=0.111  Sum_probs=110.7

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCC----------CCCCCccEEEECCEeCCCCCHHHHhh--c-cEEEeccCCcc
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHP----------DYEVTEGSVVFKGENLLEMEPEERSL--A-GLFMSFQSPVE  167 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~----------~~~p~~G~I~~~g~~i~~~~~~~~~~--~-~i~~~~Q~~~~  167 (325)
                      .+.+|..++|+|+||||||||+++|+|..          ...|+.|.|.+.|..+..+.......  . ....+.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            45789999999999999999999999921          14588999999875431110000000  0 12234466655


Q ss_pred             CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCC--CEE
Q 020520          168 IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGA--DLA  245 (325)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~lL  245 (325)
                      +.+.+..+.+...+...   ....           ..++.-+..   +.+..+.. +||+.            +|  +++
T Consensus        96 ~~~~s~~e~L~~~fl~~---ir~~-----------d~il~Vvd~---~~d~~i~~-v~~~~------------dP~~di~  145 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSH---VRAV-----------DAIYQVVRA---FDDAEIIH-VEGDV------------DPIRDLS  145 (392)
T ss_dssp             CCCCCSSSSSCHHHHHH---HTTC-----------SEEEEEEEC---CCTTCSSC-CSSSS------------CHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHH---HHHH-----------HHHHHHHhc---cccceeee-ecccc------------Ccchhhh
Confidence            54443222110000000   0000           000111111   11233333 67653            89  999


Q ss_pred             EEeCcCcCCCHHHHHHHHHHHHhc-cCCCcEEEEEeCChhHHhhhCCcEEE-EEeCC-EEEEEcCccH
Q 020520          246 ILDEIDSGLDVDALRDVAKAVNGL-LTPKNSLLMITHYRRLLEFIKPTFIH-IMEDG-RIIKTGDASI  310 (325)
Q Consensus       246 lLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvIivtHd~~~~~~~~~d~i~-vl~~G-~iv~~g~~~~  310 (325)
                      ++|||+.++|+...+..++.+..+ .+.|.||+  +|+...+..+ ++++. +|++| +++..|+.+.
T Consensus       146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l-~~~i~~~L~~G~~~~~~~~~~~  210 (392)
T 1ni3_A          146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAI-IEKVYQYLTETKQPIRKGDWSN  210 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHH-HHHHHHHHHTTCSCGGGSCCCH
T ss_pred             hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHH-HHHHHHHhccCCceeecCCCCH
Confidence            999999999999999999999998 66677754  9999888887 58887 88999 8877676553

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.32  E-value=7.8e-16  Score=134.17  Aligned_cols=56  Identities=13%  Similarity=0.040  Sum_probs=41.7

Q ss_pred             HHH-HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEe
Q 020520          234 ILQ-LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIME  298 (325)
Q Consensus       234 iAr-aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~  298 (325)
                      .|+ +++.+|++++|||+|+++|.++.+.|.+.|.++.++    +.++|.  .  .. +|+|++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~--~~-~D~iivnd  172 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE--P--GL-FDLVIIND  172 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T--TT-CSEEEECS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c--CC-ceEEEECC
Confidence            456 788899999999999999999999999988876432    234561  1  22 68887665

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.30  E-value=5.8e-16  Score=141.88  Aligned_cols=146  Identities=20%  Similarity=0.226  Sum_probs=91.5

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCC-ccCCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSP-VEIPG  170 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~-~~~~~  170 (325)
                      ..+++++++.+++|  ++|+||||+|||||+|+|+|.  ..+  |.|.++|.++......... ..+.++||.. ...+.
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~--~~~--~~i~i~g~~l~~~~~~~~~-~~i~~vf~~a~~~~p~  105 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE--SGL--NFISVKGPELLNMYVGESE-RAVRQVFQRAKNSAPC  105 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH--TTC--EEEEEETTTTCSSTTHHHH-HHHHHHHHHHHHTCSE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH--cCC--CEEEEEcHHHHhhhhhHHH-HHHHHHHHHHHhcCCC
Confidence            45889999999999  999999999999999999996  333  7999999877543221111 1233455653 22333


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCc
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI  250 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEP  250 (325)
                      +...+.+......+    .     ...    .       +......++.+. .|||||+||+.|++|+.++|++|  |||
T Consensus       106 i~~~Deid~~~~~r----~-----~~~----~-------~~~~~~~~~~l~-~Lsgg~~~~~~i~ia~tn~p~~L--D~a  162 (274)
T 2x8a_A          106 VIFFDEVDALCPRR----S-----DRE----T-------GASVRVVNQLLT-EMDGLEARQQVFIMAATNRPDII--DPA  162 (274)
T ss_dssp             EEEEETCTTTCC-----------------------------CTTHHHHHHH-HHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred             eEeeehhhhhhccc----C-----CCc----c-------hHHHHHHHHHHH-hhhcccccCCEEEEeecCChhhC--CHh
Confidence            33333222111000    0     000    0       000112223333 49999999999999999999985  999


Q ss_pred             Cc------------CCCHHHHHHHHHHHH
Q 020520          251 DS------------GLDVDALRDVAKAVN  267 (325)
Q Consensus       251 ts------------gLD~~~~~~i~~~L~  267 (325)
                      +.            --|...+..|++.+.
T Consensus       163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          163 ILRPGRLDKTLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             HHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred             hcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence            74            347777777777654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.29  E-value=6.2e-15  Score=137.16  Aligned_cols=92  Identities=13%  Similarity=0.067  Sum_probs=70.5

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEE-------------------eCCCEEEEEcCCCccHHHHHHHHhCCCCCC--CC
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLV-------------------NEGEVHAIMGKNGSGKSTLSKVLVGHPDYE--VT  134 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i-------------------~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~--p~  134 (325)
                      .+|+++||++.|.    ++++++++.+                   .+|+++||+|+||||||||+++|+|+  +.  |+
T Consensus        36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~--l~~~~~  109 (308)
T 1sq5_A           36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQAL--LSRWPE  109 (308)
T ss_dssp             TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHH--HTTSTT
T ss_pred             cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH--HhhCCC
Confidence            4689999999993    6899999988                   99999999999999999999999997  45  89


Q ss_pred             ccEEEE---CCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHH
Q 020520          135 EGSVVF---KGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHM  179 (325)
Q Consensus       135 ~G~I~~---~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~  179 (325)
                      +|+|.+   +|...   +...+..  ++++ |....++.+++.+++..
T Consensus       110 ~G~i~vi~~d~~~~---~~~~~~~--~~~v-q~~~~~~~~~~~~~~~~  151 (308)
T 1sq5_A          110 HRRVELITTDGFLH---PNQVLKE--RGLM-KKKGFPESYDMHRLVKF  151 (308)
T ss_dssp             CCCEEEEEGGGGBC---CHHHHHH--HTCT-TCTTSGGGBCHHHHHHH
T ss_pred             CCeEEEEecCCccC---cHHHHHh--CCEe-ecCCCCCCccHHHHHHH
Confidence            999999   88664   2222322  3344 66555555666655543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.26  E-value=1.9e-12  Score=127.00  Aligned_cols=63  Identities=21%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCC
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM  148 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~  148 (325)
                      .+.+++...    ..+|+++||+|++ ++++|+||||||||||+++|+|+  ++|++|+|.++|+++...
T Consensus         8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~   70 (483)
T 3euj_A            8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA--LIPDLTLLNFRNTTEAGS   70 (483)
T ss_dssp             EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH--HCCCTTTCCCCCTTSCSC
T ss_pred             ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC--CCCCCCEEEECCEEcccC
Confidence            455555432    3589999999999 99999999999999999999998  679999999999887643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.24  E-value=3.1e-12  Score=118.84  Aligned_cols=99  Identities=20%  Similarity=0.238  Sum_probs=71.6

Q ss_pred             eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHH
Q 020520           97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDF  176 (325)
Q Consensus        97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~  176 (325)
                      .+++...+|++++|+|+|||||||+++.|+++  +.+..|+|.+.+.|...  ..                     ..+ 
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~~r--~~---------------------a~e-  149 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFR--AA---------------------AIE-  149 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTC--HH---------------------HHH-
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcccccc--HH---------------------HHH-
Confidence            34566788999999999999999999999997  55677888887665321  00                     000 


Q ss_pred             HHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH---HHHHHHHhCCCEEEEeCcCc
Q 020520          177 LHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN---EILQLAVLGADLAILDEIDS  252 (325)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv---~iAraL~~~p~lLlLDEPts  252 (325)
                                              .+..+.+.+++.  .    +. .+|+|+.|++   +|++|+..+|+++|+|||..
T Consensus       150 ------------------------qL~~~~~~~gl~--~----~~-~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          150 ------------------------QLKIWGERVGAT--V----IS-HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             ------------------------HHHHHHHHHTCE--E----EC-CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ------------------------HHHHHHHHcCCc--E----Ee-cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                                    011123344553  1    12 3799999999   99999999999999999975

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.23  E-value=3.2e-11  Score=111.48  Aligned_cols=143  Identities=18%  Similarity=0.196  Sum_probs=97.6

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      +.++++++.|+.  ..  ++++|+  +|++++++|+||+||||+++.|+|+  +.+..|+|.+.+.++..  ....    
T Consensus        77 ~~~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~~~--~~~~----  142 (295)
T 1ls1_A           77 TVYEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQR--PAAR----  142 (295)
T ss_dssp             HHHHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSC--HHHH----
T ss_pred             HHHHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCccc--HhHH----
Confidence            556788888853  22  788888  9999999999999999999999997  45667889887765422  1000    


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                                       +.+.                         ...+..++.  ......  ..+..+.+|.+|+++
T Consensus       143 -----------------~ql~-------------------------~~~~~~~l~--~~~~~~--~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A          143 -----------------EQLR-------------------------LLGEKVGVP--VLEVMD--GESPESIRRRVEEKA  176 (295)
T ss_dssp             -----------------HHHH-------------------------HHHHHHTCC--EEECCT--TCCHHHHHHHHHHHH
T ss_pred             -----------------HHHH-------------------------HhcccCCeE--EEEcCC--CCCHHHHHHHHHHHH
Confidence                             0000                         001122332  111000  134456689999999


Q ss_pred             HHhCCCEEEEeCc-CcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020520          238 AVLGADLAILDEI-DSGLDVDALRDVAKAVNGLLTPKNSLLMITH  281 (325)
Q Consensus       238 L~~~p~lLlLDEP-tsgLD~~~~~~i~~~L~~l~~~g~tvIivtH  281 (325)
                      ...+++++|+||| +.++|.....++.+..+.+.. ..+++++..
T Consensus       177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~-~~~~lv~~~  220 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP-DEVLLVLDA  220 (295)
T ss_dssp             HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCC-SEEEEEEEG
T ss_pred             HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCC-CEEEEEEeC
Confidence            8899999999999 999999999998888776643 345555543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.22  E-value=3.8e-15  Score=140.04  Aligned_cols=180  Identities=15%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCC-------CEEEEEcCCCccHHHHHHHHhCCCC--CCCCccEEEECCEeCCC
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEG-------EVHAIMGKNGSGKSTLSKVLVGHPD--YEVTEGSVVFKGENLLE  147 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~G-------e~~~lvG~NGsGKSTLl~~l~Gl~~--~~p~~G~I~~~g~~i~~  147 (325)
                      +++.++++..|++  ..+++++++.+++|       +.++|+||||+|||||+++|+|...  ..+++|.+..++.++..
T Consensus        18 ~lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~   95 (334)
T 1in4_A           18 FLRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA   95 (334)
T ss_dssp             TTSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred             HcCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence            3555677766753  56899999999887       8999999999999999999999621  13566766555443311


Q ss_pred             CCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCC-ChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020520          148 MEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI-GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG  226 (325)
Q Consensus       148 ~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg  226 (325)
                      .. .......+++++|...+.+  ++.+++.....    .....-. ........+...+..+++. . ..+.+. .||+
T Consensus        96 ~~-~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~----~~~~~i~~~~~~~~~~i~~~l~~~~li-~-at~~~~-~Ls~  165 (334)
T 1in4_A           96 IL-TSLERGDVLFIDEIHRLNK--AVEELLYSAIE----DFQIDIMIGKGPSAKSIRIDIQPFTLV-G-ATTRSG-LLSS  165 (334)
T ss_dssp             HH-HHCCTTCEEEEETGGGCCH--HHHHHHHHHHH----TSCCCC---------------CCCEEE-E-EESCGG-GSCH
T ss_pred             HH-HHccCCCEEEEcchhhcCH--HHHHHHHHHHH----hcccceeeccCcccccccccCCCeEEE-E-ecCCcc-cCCH
Confidence            10 0111235778887765543  44444422211    1110000 0001112233344455553 1 344454 4999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhh
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFI  289 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~  289 (325)
                      |++||+.++                .+||+.+.+.+.++|++..+. +     ++|+.+.+..+
T Consensus       166 ~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~i  208 (334)
T 1in4_A          166 PLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMI  208 (334)
T ss_dssp             HHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHH
T ss_pred             HHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHH
Confidence            999998665                788888888889888877532 3     36777666554

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.19  E-value=1.4e-11  Score=120.48  Aligned_cols=181  Identities=9%  Similarity=0.111  Sum_probs=109.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG  170 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~  170 (325)
                      -..|+++..-+++|+++.|.|++|+|||||+..+++.  ..+..| .|.+.+...   +..+.....+.....       
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~---s~~~l~~r~~~~~~~-------  257 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM---SAQQLVMRMLCAEGN-------  257 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS---CHHHHHHHHHHHHHT-------
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC---CHHHHHHHHHHHHcC-------
Confidence            3568888878999999999999999999999999884  222234 455544322   222211100000000       


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH--hCCCEEEEe
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV--LGADLAILD  248 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~--~~p~lLlLD  248 (325)
                      .... .+         ..+  ... .+.+.++.+.++.+... .+.....+ .+|.+|.+  +.+|.++  .+|+++|+|
T Consensus       258 ~~~~-~l---------~~g--~l~-~~~~~~~~~a~~~l~~~-~l~i~d~~-~~s~~~i~--~~~~~l~~~~~~~livID  320 (454)
T 2r6a_A          258 INAQ-NL---------RTG--KLT-PEDWGKLTMAMGSLSNA-GIYIDDTP-SIRVSDIR--AKCRRLKQESGLGMIVID  320 (454)
T ss_dssp             CCHH-HH---------HTS--CCC-HHHHHHHHHHHHHHHSS-CEEEECCT-TCCHHHHH--HHHHHHHTTTCCCEEEEE
T ss_pred             CCHH-HH---------hcC--CCC-HHHHHHHHHHHHHHhcC-CEEEECCC-CCCHHHHH--HHHHHHHHHcCCCEEEEc
Confidence            0000 00         001  111 22234455555555443 22222333 49999987  5667776  689999999


Q ss_pred             CcCcCCC--------HHHHHHHHHHHHhccCC-CcEEEEEeC---------C--hh--------HHhhhCCcEEEEEeCC
Q 020520          249 EIDSGLD--------VDALRDVAKAVNGLLTP-KNSLLMITH---------Y--RR--------LLEFIKPTFIHIMEDG  300 (325)
Q Consensus       249 EPtsgLD--------~~~~~~i~~~L~~l~~~-g~tvIivtH---------d--~~--------~~~~~~~d~i~vl~~G  300 (325)
                      +++...+        ......+.+.|+.++++ +.+||+++|         |  +.        .+... +|.|++|+.+
T Consensus       321 ~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~-aD~vi~l~r~  399 (454)
T 2r6a_A          321 YLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQD-ADIVAFLYRD  399 (454)
T ss_dssp             CGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHH-CSEEEEEEET
T ss_pred             cHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhh-CCEEEEEecc
Confidence            9999874        33446777778887655 889999999         3  22        34554 7999999866


Q ss_pred             EE
Q 020520          301 RI  302 (325)
Q Consensus       301 ~i  302 (325)
                      +.
T Consensus       400 ~~  401 (454)
T 2r6a_A          400 DY  401 (454)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.19  E-value=4.3e-13  Score=124.33  Aligned_cols=112  Identities=13%  Similarity=0.022  Sum_probs=63.5

Q ss_pred             EEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEE---CCEeCCCCCHHHHhhccEEEeccCCcc---------
Q 020520          100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF---KGENLLEMEPEERSLAGLFMSFQSPVE---------  167 (325)
Q Consensus       100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~i~~~~Q~~~~---------  167 (325)
                      |++..|++++|+||||||||||+|+|+|+  ..|++|+|.+   +|+++...... .+...+++++|.|.+         
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~--~~~~~G~i~~~~~~g~~~t~~~~~-~~~~~~g~v~q~p~~~~~~~~~~~  240 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPG--LKLRVSEVSEKLQRGRHTTTTAQL-LKFDFGGYVVDTPGFANLEINDIE  240 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTT--CCCC-------------CCCSCCE-EECTTSCEEESSCSSTTCCCCSSC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccc--ccccccceecccCCCCCceeeeEE-EEcCCCCEEEECcCCCccCCCcCC
Confidence            35567999999999999999999999998  6789999999   89887654321 111236788898853         


Q ss_pred             -------CCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCCh
Q 020520          168 -------IPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSG  226 (325)
Q Consensus       168 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg  226 (325)
                             |+.+++ +++.+..     ...     ..+...++.++++.+++..+..++.+.. ||+
T Consensus       241 ~~~~~~l~~~~~~-~n~~~~~-----~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~~~-lse  294 (301)
T 1u0l_A          241 PEELKHYFKEFGD-KQCFFSD-----CNH-----VDEPECGVKEAVENGEIAESRYENYVKM-FYE  294 (301)
T ss_dssp             HHHHGGGSTTSSS-CCCSSTT-----CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhccc-ccCcCCC-----CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHHHH-HHH
Confidence                   334443 3322110     000     0111235678899999954555565543 664

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.17  E-value=2.1e-12  Score=127.57  Aligned_cols=177  Identities=15%  Similarity=0.072  Sum_probs=101.1

Q ss_pred             eeEEEEeCCCEEEEEcCCCccHHHHHHHHhC-CCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCC-CcchH
Q 020520           97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG-HPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIP-GVNNI  174 (325)
Q Consensus        97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G-l~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~-~~~~~  174 (325)
                      .+++++.++..+.|.|++||||||++++|.. +. +..+.|++.+.+.|.+.......  .      .-|.+.. ..+..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl-~~~~p~~v~l~liDpK~~el~~~--~------~lPhl~~~Vvtd~  229 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSML-YKAQPEDVRFIMIDPKMLELSVY--E------GIPHLLTEVVTDM  229 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHH-TTCCTTTEEEEEECCSSSGGGGG--T------TCTTBSSSCBCSH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHH-HhCCCceEEEEEECCchhhhhhh--c------cCCcccceeecCH
Confidence            4788999999999999999999999999875 21 44556778877776543211100  0      0111111 11221


Q ss_pred             HHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCcccccc--ccCCCCCChHHHHHH----------HHHHHHHhCC
Q 020520          175 DFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLN--RNVNEGFSGGERKRN----------EILQLAVLGA  242 (325)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~LSgGqrQRv----------~iAraL~~~p  242 (325)
                      +.........          ..+...+ .+.+...|.. ++..  ......+|+||+|+.          .+|+++...|
T Consensus       230 ~~a~~~L~~~----------~~EmerR-~~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP  297 (512)
T 2ius_A          230 KDAANALRWC----------VNEMERR-YKLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEP  297 (512)
T ss_dssp             HHHHHHHHHH----------HHHHHHH-HHHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCC
T ss_pred             HHHHHHHHHH----------HHHHHHH-HHHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCC
Confidence            1111111100          1222233 2456677764 2211  111123788888753          3566677789


Q ss_pred             C-EEEEeCcCcCCCHHHHHHHHHHHHhc---c-CCCcEEEEEeCChh-------HHhhhCCcEEEE
Q 020520          243 D-LAILDEIDSGLDVDALRDVAKAVNGL---L-TPKNSLLMITHYRR-------LLEFIKPTFIHI  296 (325)
Q Consensus       243 ~-lLlLDEPtsgLD~~~~~~i~~~L~~l---~-~~g~tvIivtHd~~-------~~~~~~~d~i~v  296 (325)
                      . ++++||+++-+|.. ...+.+.|.++   . +-|.++|++||++.       +... ...||.+
T Consensus       298 ~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n-~~~RI~l  361 (512)
T 2ius_A          298 YIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKAN-IPTRIAF  361 (512)
T ss_dssp             EEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHH-CCEEEEE
T ss_pred             cEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhh-cCCeEEE
Confidence            8 89999999998843 23444444443   2 23789999999987       3333 3577754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.14  E-value=3.6e-11  Score=111.20  Aligned_cols=140  Identities=14%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHH
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAY  181 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~  181 (325)
                      .+|++++|+|+|||||||+++.|++.  +.+++| +|.                    ++.+++.-   ....+.+.   
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~--------------------lv~~D~~r---~~a~eqL~---  154 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIA--------------------FITTDTYR---IAAVEQLK---  154 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEE--------------------EEECCCSS---TTHHHHHH---
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEE--------------------EEecCccc---chHHHHHH---
Confidence            47999999999999999999999996  445567 333                    33333310   11111111   


Q ss_pred             HHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHH
Q 020520          182 NARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRD  261 (325)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~  261 (325)
                                            ...+..++..  .   .  ..+. ..-+.+|++  +.+|+++|+|  |+|+|+.....
T Consensus       155 ----------------------~~~~~~gl~~--~---~--~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~  200 (296)
T 2px0_A          155 ----------------------TYAELLQAPL--E---V--CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQY  200 (296)
T ss_dssp             ----------------------HHHTTTTCCC--C---B--CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHH
T ss_pred             ----------------------HHHHhcCCCe--E---e--cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHH
Confidence                                  1112223321  0   0  1233 334566665  4899999999  99999876655


Q ss_pred             HHHHHHhcc--CCCcEEEEE--eCChhHHhhhCCcEEEEEeCCEEEEE
Q 020520          262 VAKAVNGLL--TPKNSLLMI--THYRRLLEFIKPTFIHIMEDGRIIKT  305 (325)
Q Consensus       262 i~~~L~~l~--~~g~tvIiv--tHd~~~~~~~~~d~i~vl~~G~iv~~  305 (325)
                      +.++.+-+.  ....+++++  +|+.+.+..+ ++++..+..+.++..
T Consensus       201 ~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~-~~~~~~l~~~giVlt  247 (296)
T 2px0_A          201 IDELKETIPFESSIQSFLVLSATAKYEDMKHI-VKRFSSVPVNQYIFT  247 (296)
T ss_dssp             HHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH-TTTTSSSCCCEEEEE
T ss_pred             HHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH-HHHHhcCCCCEEEEe
Confidence            554443332  122234444  8987777665 355444566666653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.13  E-value=8.7e-12  Score=110.64  Aligned_cols=59  Identities=10%  Similarity=0.091  Sum_probs=42.0

Q ss_pred             hCCCEEEEeCcCcCC--CHHHHHHHHHHHHhcc-CCCcEEEEEeCChhH--------HhhhCCcEEEEEeC
Q 020520          240 LGADLAILDEIDSGL--DVDALRDVAKAVNGLL-TPKNSLLMITHYRRL--------LEFIKPTFIHIMED  299 (325)
Q Consensus       240 ~~p~lLlLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvIivtHd~~~--------~~~~~~d~i~vl~~  299 (325)
                      .+|+++++|+|++.+  |+....+++..|.++. +.|.|||+++|....        +... +|.++.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~-~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHG-VDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHH-SSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccccccccccee-EEEEEEEEE
Confidence            589999999999988  6544455555555554 458899999998664        3455 589988863

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.12  E-value=3.2e-12  Score=118.77  Aligned_cols=125  Identities=13%  Similarity=0.104  Sum_probs=62.9

Q ss_pred             EEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEE---CCEeCCCCCHHHHhhccEEEeccCCccCC----Ccc
Q 020520          100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVF---KGENLLEMEPEERSLAGLFMSFQSPVEIP----GVN  172 (325)
Q Consensus       100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~----~~~  172 (325)
                      +++.+|++++|+|+||||||||+|+|+|+  ..|..|+|.+   +|+.+....  .+....+++++|.|.+..    .++
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~--~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~~~~l~~lt  243 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE--LGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFSSLEFTDIE  243 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCC--CEEEETTEEEESSCSCSSCCCTTCC
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccc--ccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCccccccccCC
Confidence            45678999999999999999999999997  5789999998   887765432  111112578899987654    456


Q ss_pred             hHHHHHHHHH-HHhh--hcCCCC-CChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          173 NIDFLHMAYN-ARRR--KLGQPE-IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       173 ~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                      + +++...+. ....  .-.... ....+....+.++++.+++.....+ ... .|+.|++||
T Consensus       244 ~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~-~lls~~~~~  303 (307)
T 1t9h_A          244 E-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYV-EFMTEIKDR  303 (307)
T ss_dssp             H-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHH-HHHHHHHTT
T ss_pred             H-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHH-HHHHHHhhc
Confidence            6 55532221 1100  000000 0001112346778899998632223 333 377888773

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.05  E-value=2.9e-10  Score=97.54  Aligned_cols=37  Identities=11%  Similarity=0.121  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHh
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG  268 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~  268 (325)
                      +.+.+|++++.+|+++++|  ||++|..+.+++++.|.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            3467899999999999999  999999999999998865

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.03  E-value=3.1e-10  Score=107.21  Aligned_cols=77  Identities=18%  Similarity=0.262  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhC--CCEEEEeCcCcCC----------CH---HHHHHHHHHHHhc----cCCCcEEEEEeCChhH-----
Q 020520          230 KRNEILQLAVLG--ADLAILDEIDSGL----------DV---DALRDVAKAVNGL----LTPKNSLLMITHYRRL-----  285 (325)
Q Consensus       230 QRv~iAraL~~~--p~lLlLDEPtsgL----------D~---~~~~~i~~~L~~l----~~~g~tvIivtHd~~~-----  285 (325)
                      |-+.++++++.+  |+++|+||+++.+          |.   ...+.+.+.++++    .+.+.|||+++|..+.     
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            445678888755  9999999999998          32   1222344444444    3448899999996431     


Q ss_pred             -----------HhhhCCcEEEEEeCCEEEEEcC
Q 020520          286 -----------LEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       286 -----------~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                                 +..+ +|.++.++.++++..|+
T Consensus       206 ~~p~~~~gg~~l~~~-ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          206 GSPETTTGGKALKFY-ASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             ----CCSSHHHHHHH-CSEEEEEEEEEEECSSS
T ss_pred             CCCcccCCchHhhhc-cceEEEEEEeeeeecCc
Confidence                       3444 68888888776554443

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.01  E-value=4.6e-12  Score=112.77  Aligned_cols=76  Identities=21%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHH-----
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE-----  151 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~-----  151 (325)
                      .|+++|+...|+   .      +|++.+ ++++|+||||||||||+++|+|+  +.|++|+|.++|.++...++.     
T Consensus         9 ~l~l~~~~~~~~---~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~   76 (227)
T 1qhl_A            9 SLTLINWNGFFA---R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA--LIPDLTLLHFRNTTEAGATSGSRDKG   76 (227)
T ss_dssp             EEEEEEETTEEE---E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHH--HSCCTTTC------------------
T ss_pred             EEEEEeeecccC---C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcc--cccCCCeEEECCEEcccCCccccccc
Confidence            588888876552   1      566677 89999999999999999999998  678999999999987443321     


Q ss_pred             --HHhhccEEEeccC
Q 020520          152 --ERSLAGLFMSFQS  164 (325)
Q Consensus       152 --~~~~~~i~~~~Q~  164 (325)
                        .....++++++|+
T Consensus        77 ~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           77 LHGKLKAGVCYSMLD   91 (227)
T ss_dssp             CGGGBCSSEEEEEEE
T ss_pred             hhhHhhcCcEEEEEe
Confidence              1112467888874

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.00  E-value=2.9e-11  Score=104.53  Aligned_cols=63  Identities=16%  Similarity=0.220  Sum_probs=43.3

Q ss_pred             EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccC
Q 020520           99 NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEI  168 (325)
Q Consensus        99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~  168 (325)
                      |+++.+|++++|+||||||||||+++|+|+  + |   .+.+.+..+....... ...+++++||++..+
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~--~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   63 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKA--L-A---EIKISISHTTRPKRPG-DQEGVDYFFIDETRF   63 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHH--S-S---SEEECCCEECSCCCTT-CCBTTTBEECCHHHH
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhh--C-C---CeEEeceeccCCCchh-HhcCceEEeccHHHH
Confidence            577889999999999999999999999996  3 3   5778877665433211 123456778876543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.93  E-value=6.7e-13  Score=121.14  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=92.4

Q ss_pred             EEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccE
Q 020520           79 QVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGL  158 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i  158 (325)
                      +++++.+.|..  ..+++++++++++|  ++|+||||+|||||+++|++.  .  ..|.|.+++.++......... ..+
T Consensus        51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~--~--~~~~i~~~~~~~~~~~~~~~~-~~i  121 (278)
T 1iy2_A           51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE--A--RVPFITASGSDFVEMFVGVGA-ARV  121 (278)
T ss_dssp             HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH--T--TCCEEEEEHHHHHHSTTTHHH-HHH
T ss_pred             HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH--c--CCCEEEecHHHHHHHHhhHHH-HHH
Confidence            44566666642  46899999999999  899999999999999999996  2  278999988664321111110 112


Q ss_pred             EEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          159 FMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       159 ~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ..+||... ..+.+...+.+.........  ... ....+....+...              +. .|||||+||+.+++|
T Consensus       122 ~~~~~~~~~~~~~i~~iDeid~l~~~~~~--~~~-~~~~~~~~~~~~l--------------l~-~lsgg~~~~~~i~~a  183 (278)
T 1iy2_A          122 RDLFETAKRHAPCIVFIDEIDAVGRKRGS--GVG-GGNDEREQTLNQL--------------LV-EMDGFEKDTAIVVMA  183 (278)
T ss_dssp             HHHHHHHHTSCSEEEEEETHHHHHCC-----------CHHHHHHHHHH--------------HH-HHTTCCTTCCEEEEE
T ss_pred             HHHHHHHHhcCCcEEehhhhHhhhccccc--ccC-CcchHHHHHHHHH--------------HH-HHhCCCCCCCEEEEE
Confidence            33455542 23334444444322110000  000 0011111111111              11 389999999999999


Q ss_pred             HHhCCCEEEEeCcCc------------CCCHHHHHHHHHHH
Q 020520          238 AVLGADLAILDEIDS------------GLDVDALRDVAKAV  266 (325)
Q Consensus       238 L~~~p~lLlLDEPts------------gLD~~~~~~i~~~L  266 (325)
                      +.++|++  +|++.-            -.|.+.+..+++..
T Consensus       184 ~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~  222 (278)
T 1iy2_A          184 ATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH  222 (278)
T ss_dssp             EESCTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred             ecCCchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence            9999987  677643            23556666665543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.93  E-value=2.2e-10  Score=101.46  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=22.9

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh-CC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV-GH  128 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~-Gl  128 (325)
                      .+..+++||++++|++++|+||||||||||+++|+ |+
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            45789999999999999999999999999999999 97

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.89  E-value=6.7e-13  Score=119.30  Aligned_cols=160  Identities=18%  Similarity=0.205  Sum_probs=93.2

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      .+++++.+.|.+  ..+++++++++++|  ++|+||||+|||||+++|++.  .  ..|.|.++|.++......... ..
T Consensus        26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~--~--~~~~i~~~~~~~~~~~~~~~~-~~   96 (254)
T 1ixz_A           26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE--A--RVPFITASGSDFVEMFVGVGA-AR   96 (254)
T ss_dssp             HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH--T--TCCEEEEEHHHHHHSCTTHHH-HH
T ss_pred             HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH--h--CCCEEEeeHHHHHHHHhhHHH-HH
Confidence            345566655642  46899999999999  999999999999999999996  2  378899988654321111110 11


Q ss_pred             EEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          158 LFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       158 i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      +..+||... ..+.+...+.+...........+   ....+....+...+              . .|||||+||+.|++
T Consensus        97 i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~---~~~~~~~~~~~~ll--------------~-~l~g~~~~~~~i~~  158 (254)
T 1ixz_A           97 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG---GGNDEREQTLNQLL--------------V-EMDGFEKDTAIVVM  158 (254)
T ss_dssp             HHHHHHHHTTSSSEEEEEETHHHHHC------------CHHHHHHHHHHH--------------H-HHHTCCTTCCEEEE
T ss_pred             HHHHHHHHHhcCCeEEEehhhhhhhcccCcccc---ccchHHHHHHHHHH--------------H-HHhCCCCCCCEEEE
Confidence            233455532 23334444444222111000000   00111111111111              1 38999999999999


Q ss_pred             HHHhCCCEEEEeCcCcC------------CCHHHHHHHHHHH
Q 020520          237 LAVLGADLAILDEIDSG------------LDVDALRDVAKAV  266 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsg------------LD~~~~~~i~~~L  266 (325)
                      |+.++|++  +|++.--            .|.+.+..+++..
T Consensus       159 a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~  198 (254)
T 1ixz_A          159 AATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH  198 (254)
T ss_dssp             EEESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             EccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence            99999987  6877642            3666666666543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.87  E-value=3.7e-09  Score=90.86  Aligned_cols=36  Identities=14%  Similarity=0.177  Sum_probs=31.7

Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGL  269 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l  269 (325)
                      ...|++++.+|+++++|  ||++|..+.+++++.|.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence            35689999999999999  9999999999999888764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.85  E-value=1.4e-10  Score=104.70  Aligned_cols=53  Identities=30%  Similarity=0.428  Sum_probs=35.4

Q ss_pred             CCcEEEEEE-EEEECCCcccceeeeEEEEeC---CCEEEEEcCCCccHHHHHHHHhCC
Q 020520           75 QPLLQVTGL-TAVIAESKQEILKGVNLLVNE---GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        75 ~~~l~~~~l-s~~y~~~~~~iL~~vsl~i~~---Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++++|+ +++|+ +++.+|+++||+|.+   |++++|+|++||||||+.++|++.
T Consensus        15 ~~~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           15 SALLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            358999999 99993 246799999999999   999999999999999999999984

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.85  E-value=7.4e-10  Score=111.89  Aligned_cols=165  Identities=12%  Similarity=0.072  Sum_probs=99.3

Q ss_pred             EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCc-cEEEECCEeCCCCCHHHHhhccEE
Q 020520           81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTE-GSVVFKGENLLEMEPEERSLAGLF  159 (325)
Q Consensus        81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~-G~I~~~g~~i~~~~~~~~~~~~i~  159 (325)
                      ++++..|+.  ..+++++++.+.+|+.++|+||||+|||||+++|+|+  ..+.. |.+.+++.+.....      ..+.
T Consensus        38 ~~l~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~~~~~~~~~~~~~~~~------p~i~  107 (604)
T 3k1j_A           38 KLIDQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL--LPTETLEDILVFPNPEDENM------PRIK  107 (604)
T ss_dssp             SHHHHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT--SCCSSCEEEEEECCTTCTTS------CEEE
T ss_pred             cccceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc--CCcccCCeEEEeCCcccccC------CcEE
Confidence            334444543  5689999999999999999999999999999999997  44555 78888876654322      1244


Q ss_pred             EeccCCccCCCcchHHHHHHHHHHHhhhcC-----------------------CCCCC-hHHHHHhHHHHHHhcCCcccc
Q 020520          160 MSFQSPVEIPGVNNIDFLHMAYNARRRKLG-----------------------QPEIG-PIEFYAYLYPKLERLSMKTDF  215 (325)
Q Consensus       160 ~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~~~l~~~~l~~~~  215 (325)
                      ++++...       ...+............                       ..... ..+......+++..+..    
T Consensus       108 ~~p~g~~-------~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~----  176 (604)
T 3k1j_A          108 TVPACQG-------RRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH----  176 (604)
T ss_dssp             EEETTHH-------HHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC----
T ss_pred             EEecchH-------HHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe----
Confidence            4444320       1111110000000000                       00000 00000001111111111    


Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHh
Q 020520          216 LNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG  268 (325)
Q Consensus       216 ~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~  268 (325)
                      .....+ .+|+|++|++..++....++.+|+|||... |++.....+++.|.+
T Consensus       177 ~~~~~g-~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          177 DPFQSG-GLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             CCC-----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             chhhcC-CccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            111113 489999999999999999999999999988 899999999999985

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.84  E-value=1.7e-11  Score=117.00  Aligned_cols=154  Identities=15%  Similarity=0.029  Sum_probs=87.9

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCcc-CCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVE-IPG  170 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~-~~~  170 (325)
                      ..+++++++.+++|++++|+||||||||||+++|+|.     ..|.+..-+  ........    .++++||.... +..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~--~~~~~~~~----~lg~~~q~~~~l~dd  224 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVN--LPLDRLNF----ELGVAIDQFLVVFED  224 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCS--SCTTTHHH----HHGGGTTCSCEEETT
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEe--ccchhHHH----HHHHhcchhHHHHHH
Confidence            3589999999999999999999999999999999994     467776521  11111111    13345665431 222


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHH---------------hcCCccccccccCCCCCChHHHHHHHHH
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE---------------RLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      .+.....     .    ..............+...++               ..-+.+..++.... .+++|++||++.+
T Consensus       225 ~~~~~~~-----~----r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~-~l~~~~~~rl~~~  294 (377)
T 1svm_A          225 VKGTGGE-----S----RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEY-SVPKTLQARFVKQ  294 (377)
T ss_dssp             CCCSTTT-----T----TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSC-CCCHHHHTTEEEE
T ss_pred             HHHHHHH-----H----hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHH-hhcHHHHHHHhhh
Confidence            2111000     0    00000000000011222232               01111122334443 3899999999998


Q ss_pred             HHHHhCCCEEE-EeCcCcCCCHHHHHHHHHHHHhccCCCcEEE
Q 020520          236 QLAVLGADLAI-LDEIDSGLDVDALRDVAKAVNGLLTPKNSLL  277 (325)
Q Consensus       236 raL~~~p~lLl-LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvI  277 (325)
                      .+++..|++++ ||+|+.           ..++++.++|.+++
T Consensus       295 ~~l~~~pDLliyLd~~~~-----------~l~~RL~~Rg~t~~  326 (377)
T 1svm_A          295 IDFRPKDYLKHCLERSEF-----------LLEKRIIQSGIALL  326 (377)
T ss_dssp             EECCCCHHHHHHHHTCTH-----------HHHTTCTTCHHHHH
T ss_pred             hccCCCCCeEEEEeCCHH-----------HHHHHHHHcCccHH
Confidence            88889999988 999987           24566666665543

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.73  E-value=1.2e-08  Score=105.80  Aligned_cols=67  Identities=19%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCc-CCCHHHHHHHHHHHHhccCCCcEEEE-EeCChhHHhhhC
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDS-GLDVDALRDVAKAVNGLLTPKNSLLM-ITHYRRLLEFIK  290 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvIi-vtHd~~~~~~~~  290 (325)
                      +|+|+.+|..++++++.+++++|+|||.. +||......+++.+........+|++ +||+.+.+..+.
T Consensus       191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~  259 (773)
T 2xau_A          191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYF  259 (773)
T ss_dssp             EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHT
T ss_pred             ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHh
Confidence            79999999999999999999999999997 99988777777777666555567777 499987666553

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.69  E-value=1.4e-09  Score=94.20  Aligned_cols=47  Identities=17%  Similarity=0.225  Sum_probs=33.6

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL  146 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~  146 (325)
                      +..+-.++.++|++++|+|+||||||||+++|+|.  +    |.+.++|.++.
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~--~----g~~~i~~d~~~   64 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE--T----GLEFAEADAFH   64 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHH--H----CCEEEEGGGGS
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh--h----CCeEEcccccc
Confidence            33334466789999999999999999999999995  2    88999987764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.65  E-value=2.1e-08  Score=84.91  Aligned_cols=51  Identities=25%  Similarity=0.296  Sum_probs=39.1

Q ss_pred             EEEEEEEEECCCcccce--eeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc
Q 020520           79 QVTGLTAVIAESKQEIL--KGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG  136 (325)
Q Consensus        79 ~~~~ls~~y~~~~~~iL--~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G  136 (325)
                      .++.|...    +...+  +++++++.+| +++|+||||||||||+++|.++  +.+..|
T Consensus         3 ~i~~l~i~----nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~--l~~~~~   55 (182)
T 3kta_A            3 YIEKLELK----GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV--LGGLSA   55 (182)
T ss_dssp             EEEEEEEE----SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH--TTCCCT
T ss_pred             eEEEEEEe----CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH--HcCCcc
Confidence            34555543    12356  7899999999 9999999999999999999996  334444

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.63  E-value=2.6e-09  Score=96.12  Aligned_cols=59  Identities=24%  Similarity=0.265  Sum_probs=44.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHh---CCCCCCCCccEEE--------ECCEeCCCC-CHHHHhhccEEEeccC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLV---GHPDYEVTEGSVV--------FKGENLLEM-EPEERSLAGLFMSFQS  164 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~---Gl~~~~p~~G~I~--------~~g~~i~~~-~~~~~~~~~i~~~~Q~  164 (325)
                      .+|++++|+|||||||||++++|+   |+  ..+++|.|.        .+|.++... ...... ..+++++|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~--~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~   95 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNW--RLLDSGAIYRVLALAALHHQVDISTEEALVPLA-AHLDVRFVS   95 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTC--EEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHH-HTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCC--CcCCCCceehHhHHHHHHcCCCcccHHHHHHHH-HcCCEEEec
Confidence            789999999999999999999999   97  567999999        899887432 222222 234555654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.62  E-value=2.8e-08  Score=97.48  Aligned_cols=62  Identities=18%  Similarity=0.208  Sum_probs=45.4

Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcC----------cCCCHHHHHHHHHHHHhcc----CCCcEEEEEeCChhHH
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEID----------SGLDVDALRDVAKAVNGLL----TPKNSLLMITHYRRLL  286 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPt----------sgLD~~~~~~i~~~L~~l~----~~g~tvIivtHd~~~~  286 (325)
                      .|++++|..+++|....|.+|++||+.          .|.|....+.+.+++..+.    ..+..||.+||+++.+
T Consensus        92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            367889999999999999999999994          4677776666666666552    2367889999987654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.62  E-value=8e-08  Score=90.72  Aligned_cols=60  Identities=12%  Similarity=0.050  Sum_probs=48.3

Q ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEe-CcCcCCCHHHHHHHHHHHHhccCCCcEEEEEe--CChh
Q 020520          223 GFSGGERKRNEILQLAVLGADLAILD-EIDSGLDVDALRDVAKAVNGLLTPKNSLLMIT--HYRR  284 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL~~~p~lLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvIivt--Hd~~  284 (325)
                      .+|+|++|++. +.+...++-++++| +|++++|......+++.+.++.. +..+|+|.  ||+.
T Consensus       231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~  293 (357)
T 2e87_A          231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA  293 (357)
T ss_dssp             TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred             hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence            48999999876 55555677889999 99999999998888888877643 56788888  8864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.61  E-value=1.9e-07  Score=88.65  Aligned_cols=150  Identities=14%  Similarity=0.131  Sum_probs=79.4

Q ss_pred             CCCE-EEEEcCCCccHHHHHHHHhCCCCC---------CCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcch
Q 020520          104 EGEV-HAIMGKNGSGKSTLSKVLVGHPDY---------EVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNN  173 (325)
Q Consensus       104 ~Ge~-~~lvG~NGsGKSTLl~~l~Gl~~~---------~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~  173 (325)
                      .|-. ++|+|++|||||||++.|+|....         .++.|.|.++|.++.-++       -.+++.+.|.     ..
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~D-------T~G~i~~lp~-----~l  244 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVD-------TVGFIRGIPP-----QI  244 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEE-------CCCBCSSCCG-----GG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEe-------CCCchhcCCH-----HH
Confidence            3444 999999999999999999996211         156788999886541100       0112222111     01


Q ss_pred             HHHHHHHHH-HHhhh-----cCCCCCC--hHHHHHhHHHHHHhcCCcccc---ccccCCCCCChHHHHHHHHH----HHH
Q 020520          174 IDFLHMAYN-ARRRK-----LGQPEIG--PIEFYAYLYPKLERLSMKTDF---LNRNVNEGFSGGERKRNEIL----QLA  238 (325)
Q Consensus       174 ~~~~~~~~~-~~~~~-----~~~~~~~--~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~LSgGqrQRv~iA----raL  238 (325)
                      .+.+..... .....     .......  ..+....+.+.++.++.....   ...+.. .+|+|++||+.++    +++
T Consensus       245 ve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D-l~~~~~~~~~~~~~~l~~~l  323 (364)
T 2qtf_A          245 VDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID-KINGDLYKKLDLVEKLSKEL  323 (364)
T ss_dssp             HHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGG-GCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCC-CCCchHHHHHHHHHHHHHHh
Confidence            111111110 00000     0000000  111222344556666543110   022232 3788899988887    554


Q ss_pred             -HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhcc
Q 020520          239 -VLGADLAILDEIDSGLDVDALRDVAKAVNGLL  270 (325)
Q Consensus       239 -~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~  270 (325)
                       ..+|++    +|+|++|..+...+.+.|.++.
T Consensus       324 ~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          324 YSPIFDV----IPISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             CSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence             334444    8999999999999999988764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.60  E-value=3.8e-08  Score=93.01  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=32.4

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE-EECCE
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV-VFKGE  143 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I-~~~g~  143 (325)
                      -+++|+++.|.||+|||||||+..+++.  ..+..|.+ +++++
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E   98 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAE   98 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESS
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecc
Confidence            4889999999999999999999999985  33345654 55544

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.57  E-value=2.6e-08  Score=86.16  Aligned_cols=70  Identities=9%  Similarity=-0.013  Sum_probs=44.9

Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH--hhhCCcEEEEEe
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL--EFIKPTFIHIME  298 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~--~~~~~d~i~vl~  298 (325)
                      .+.|+.+|..+++.+..+|+.+..+  .+.++|...+.+.+.+....  +.++|+.+|.+...  ... +|.+++++
T Consensus        60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~--~~~vv~~~~~l~e~~~~~~-~d~vi~l~  131 (206)
T 1jjv_A           60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT--APYTLFVVPLLIENKLTAL-CDRILVVD  131 (206)
T ss_dssp             ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC--SSEEEEECTTTTTTTCGGG-CSEEEEEE
T ss_pred             ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC--CCEEEEEechhhhcCcHhh-CCEEEEEE
Confidence            4678999999999888888754333  45677877777777776542  45788888976554  333 58887775

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.56  E-value=1.4e-07  Score=88.97  Aligned_cols=57  Identities=11%  Similarity=0.080  Sum_probs=42.4

Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCC-cEEEEEeC
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPK-NSLLMITH  281 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvIivtH  281 (325)
                      .++.++|+..+++..+.+|+++||.-..+..|... ...+++++.+...| .+|+++|.
T Consensus       155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            56788999999999999999888885444455443 45566777776554 58888887

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.55  E-value=2.3e-09  Score=92.74  Aligned_cols=60  Identities=30%  Similarity=0.374  Sum_probs=44.0

Q ss_pred             EEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE--EECCEeC
Q 020520           81 TGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV--VFKGENL  145 (325)
Q Consensus        81 ~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I--~~~g~~i  145 (325)
                      +|++..++  ...+.+..++..++|++++|+|+||||||||+++|++.  +. ..|.+  .++|.++
T Consensus         3 ~~~~~~~~--~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~--l~-~~G~~~~~~d~d~~   64 (200)
T 3uie_A            3 TNIKWHEC--SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQM--LY-QKGKLCYILDGDNV   64 (200)
T ss_dssp             -------C--CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHH--HH-HTTCCEEEEEHHHH
T ss_pred             CCCccccc--ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH--HH-hcCceEEEecCchh
Confidence            46666554  35677888888899999999999999999999999996  33 56887  8887654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.54  E-value=3e-08  Score=101.25  Aligned_cols=137  Identities=16%  Similarity=0.111  Sum_probs=80.8

Q ss_pred             EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHH
Q 020520           99 NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLH  178 (325)
Q Consensus        99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~  178 (325)
                      ++++++|..++|+|++|+|||||++.|++.....+..|+| .+|..+......++. .++.+.+|...++.. +      
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~-~giti~~~~~~~~~~-~------   73 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKL-HRTTVRTGVAPLLFR-G------   73 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHH-TTSCCSCEEEEEEET-T------
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHh-cCCeEEecceEEeeC-C------
Confidence            4567889999999999999999999999752122467888 677777766655443 234444444322110 0      


Q ss_pred             HHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHH
Q 020520          179 MAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA  258 (325)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~  258 (325)
                                                      ....++|..-...++     ......+-..+.-++++| |+.|+++.+
T Consensus        74 --------------------------------~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt  115 (665)
T 2dy1_A           74 --------------------------------HRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGT  115 (665)
T ss_dssp             --------------------------------EEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHH
T ss_pred             --------------------------------EEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhH
Confidence                                            000122221111121     112222335688899999 999999887


Q ss_pred             HHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          259 LRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       259 ~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      ++.+ +.+.+   .+..+|++.|.++..
T Consensus       116 ~~~~-~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          116 ERAW-TVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHH-HHHHH---TTCCEEEEEECGGGC
T ss_pred             HHHH-HHHHH---ccCCEEEEecCCchh
Confidence            7443 33333   367788888887753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.51  E-value=4.7e-08  Score=84.15  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=28.4

Q ss_pred             EEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc
Q 020520          100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG  136 (325)
Q Consensus       100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G  136 (325)
                      ++|.+|++++|+||||||||||+++|+++  +.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~--~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED--PSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHC--TTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHh--hCCCeE
Confidence            46889999999999999999999999997  445555

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.47  E-value=8.6e-10  Score=102.94  Aligned_cols=57  Identities=21%  Similarity=0.159  Sum_probs=42.4

Q ss_pred             EEEEECCCcccceeeeEEEEeCCC------EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC
Q 020520           83 LTAVIAESKQEILKGVNLLVNEGE------VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK  141 (325)
Q Consensus        83 ls~~y~~~~~~iL~~vsl~i~~Ge------~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~  141 (325)
                      +++.|+  ++..|++++..+.+++      ++||+||||||||||+++|.++....|+.|.+.+-
T Consensus        66 l~~~~~--~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i  128 (321)
T 3tqc_A           66 LSFYVT--ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI  128 (321)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred             HHHhhc--chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence            344453  3567888888887777      99999999999999999999973222556665443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=6.1e-08  Score=83.65  Aligned_cols=38  Identities=21%  Similarity=0.171  Sum_probs=24.0

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520           91 KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        91 ~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ...+++|+||++.+|++++|+|++||||||+.+.|++.
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999999999999999974

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.46  E-value=1.6e-07  Score=88.20  Aligned_cols=129  Identities=13%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcc
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVN  172 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~  172 (325)
                      .-|+.+.--+.+|+++.|.|++|+|||||+.-++..  .....+.|.+.                   ...       ++
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~f-------------------SlE-------ms   85 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVF-------------------SLE-------MS   85 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEE-------------------ESS-------SC
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEE-------------------eCC-------CC
Confidence            456666657899999999999999999999888763  11111222221                   111       11


Q ss_pred             hHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCc
Q 020520          173 NIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS  252 (325)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPts  252 (325)
                      ..+.                      ..++......+.+. .+..   + .||.++.+|+..|...+.+++++|.|+|..
T Consensus        86 ~~ql----------------------~~Rlls~~~~v~~~-~l~~---g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~  138 (338)
T 4a1f_A           86 AEQL----------------------ALRALSDLTSINMH-DLES---G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYV  138 (338)
T ss_dssp             HHHH----------------------HHHHHHHHHCCCHH-HHHH---T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTC
T ss_pred             HHHH----------------------HHHHHHHhhCCCHH-HHhc---C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCC
Confidence            1111                      11111111122221 1111   2 499999999999999999999999999875


Q ss_pred             CCCHHHHHHHHHHHHhccC-C-CcEEEEEeC
Q 020520          253 GLDVDALRDVAKAVNGLLT-P-KNSLLMITH  281 (325)
Q Consensus       253 gLD~~~~~~i~~~L~~l~~-~-g~tvIivtH  281 (325)
                      .+|     .|...++++++ . +..+|||-|
T Consensus       139 si~-----~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          139 RIE-----QIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             CHH-----HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             cHH-----HHHHHHHHHHHhcCCCCEEEEec
Confidence            433     44444444432 3 567887764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.44  E-value=1.3e-06  Score=82.05  Aligned_cols=48  Identities=15%  Similarity=0.041  Sum_probs=37.2

Q ss_pred             hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC---CCcEEEEEeCChhHHhh
Q 020520          240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLT---PKNSLLMITHYRRLLEF  288 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvIivtHd~~~~~~  288 (325)
                      .+|.+|++||+... |......+.+.+.++..   .+.++|++||+.++...
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~  174 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN  174 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence            45889999999876 88888888888766543   46789999998865443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.40  E-value=3.5e-08  Score=92.07  Aligned_cols=51  Identities=18%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCC
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLE  147 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~  147 (325)
                      +++++|++++|++++|+|+||+||||++..|++.  +.+..|+|.+.+.|+..
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~D~~r  145 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAADTFR  145 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCCSC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCcc
Confidence            3688999999999999999999999999999997  55678999998877643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.37  E-value=9.9e-08  Score=81.10  Aligned_cols=35  Identities=11%  Similarity=0.229  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCCCCCCC-CccEEEE
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEV-TEGSVVF  140 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p-~~G~I~~  140 (325)
                      +|++++|+||||||||||+++|+++  +++ ..|.|..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~--~~~~~~~~i~~   39 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITK--HPDRFAYPIPH   39 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH--CTTTEECCCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh--CCccEEEeeec
Confidence            6899999999999999999999996  332 4555544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.33  E-value=1.4e-07  Score=83.44  Aligned_cols=39  Identities=21%  Similarity=0.161  Sum_probs=34.4

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      +.++|++++|.|+||||||||+++|+|+      .|+|.+.+++.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~   54 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV   54 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence            4578999999999999999999999994      68899988764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.32  E-value=4.4e-09  Score=103.73  Aligned_cols=146  Identities=18%  Similarity=0.199  Sum_probs=81.5

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      .+++++...|.+  ..+++++++.+++|  +.|+||||+|||||+++|++.  .  ..+.+.+++.++......... ..
T Consensus        41 ~~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~--~--~~~~i~i~g~~~~~~~~g~~~-~~  111 (499)
T 2dhr_A           41 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE--A--RVPFITASGSDFVEMFVGVGA-AR  111 (499)
T ss_dssp             HHHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH--T--TCCEEEEEGGGGTSSCTTHHH-HH
T ss_pred             HHHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH--h--CCCEEEEehhHHHHhhhhhHH-HH
Confidence            334445444432  45789999999999  899999999999999999996  2  367899998776442211100 01


Q ss_pred             EEEeccCCc-cCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          158 LFMSFQSPV-EIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       158 i~~~~Q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      +..+||... ..+.+...+.+.......  ..+. .....+....+..++.               .||||++|+..|++
T Consensus       112 v~~lfq~a~~~~p~il~IDEId~l~~~r--~~~~-~~~~~e~~~~l~~LL~---------------~Ldg~~~~~~vivi  173 (499)
T 2dhr_A          112 VRDLFETAKRHAPCIVFIDEIDAVGRKR--GSGV-GGGNDEREQTLNQLLV---------------EMDGFEKDTAIVVM  173 (499)
T ss_dssp             HHHHTTTSSSSSSCEEEEECGGGTCCCS--SSST-TTSSHHHHHHHHHHHH---------------HGGGCCSSCCCEEE
T ss_pred             HHHHHHHHHhcCCCEEEEehHHHHHHhh--ccCc-CCCcHHHHHHHHHHHH---------------HhcccccCccEEEE
Confidence            223355542 222222222221110000  0000 0001111111222211               27888888888888


Q ss_pred             HHHhCCCEEEEeCcCc
Q 020520          237 LAVLGADLAILDEIDS  252 (325)
Q Consensus       237 aL~~~p~lLlLDEPts  252 (325)
                      |..++|++  |||+.-
T Consensus       174 Aatn~p~~--LD~aLl  187 (499)
T 2dhr_A          174 AATNRPDI--LDPALL  187 (499)
T ss_dssp             ECCSCGGG--SCTTTS
T ss_pred             EecCChhh--cCcccc
Confidence            88888887  788765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.27  E-value=2.7e-07  Score=80.13  Aligned_cols=51  Identities=18%  Similarity=0.312  Sum_probs=35.2

Q ss_pred             EEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCC-----------CCCccEEEECCEeCCCCCHH
Q 020520           99 NLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDY-----------EVTEGSVVFKGENLLEMEPE  151 (325)
Q Consensus        99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~-----------~p~~G~I~~~g~~i~~~~~~  151 (325)
                      |+...+|++++|+||||||||||++.|++....           +|..|+  ++|.+....+..
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~   74 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTE   74 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHH
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHH
Confidence            344558999999999999999999999986210           155665  566665444443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.26  E-value=1.4e-07  Score=81.66  Aligned_cols=46  Identities=26%  Similarity=0.115  Sum_probs=37.2

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME  149 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~  149 (325)
                      .++|++++|+|+||||||||+++|+++  +.+..|.|.+.+.+....+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~--~~~~~~~v~~~~~d~~~~~   64 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQT--LREQGISVCVFHMDDHIVE   64 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGCCC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH--HhhcCCeEEEeccCcccCC
Confidence            567999999999999999999999996  4556788887766544433

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.21  E-value=3.6e-06  Score=81.46  Aligned_cols=39  Identities=23%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEe
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGEN  144 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~  144 (325)
                      ++.+++++|+|||||||++..|++.  +.+..++|.+-+.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecC
Confidence            5789999999999999999999986  44556677665554

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.20  E-value=5.4e-06  Score=77.80  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=25.6

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999988873

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.19  E-value=4.4e-06  Score=77.65  Aligned_cols=55  Identities=15%  Similarity=0.137  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHH---hCCCEEEEeCcCcCCCH--------HH----HHHHHHHHHhccCC-CcEEEEEeCCh
Q 020520          229 RKRNEILQLAV---LGADLAILDEIDSGLDV--------DA----LRDVAKAVNGLLTP-KNSLLMITHYR  283 (325)
Q Consensus       229 rQRv~iAraL~---~~p~lLlLDEPtsgLD~--------~~----~~~i~~~L~~l~~~-g~tvIivtHd~  283 (325)
                      .+.+..++.++   .+++++|+|+.++-...        ..    ..+++..|+.++++ +.+||++.|-.
T Consensus       188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~  258 (324)
T 2z43_A          188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM  258 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence            45677777777   57999999999987643        11    24445555555544 78999998854

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.15  E-value=1e-06  Score=76.63  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=24.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++|++++|+||||||||||++.|++.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            57999999999999999999999996

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.15  E-value=4.1e-07  Score=76.37  Aligned_cols=38  Identities=24%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL  146 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~  146 (325)
                      .+|++++|+|+||||||||+++|++.  +    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~--~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQ--L----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH--H----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHh--h----CcEEEeCcccc
Confidence            46899999999999999999999985  2    78888876654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.13  E-value=2.8e-06  Score=78.76  Aligned_cols=53  Identities=9%  Similarity=0.162  Sum_probs=38.0

Q ss_pred             CChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcE--EEEEeC
Q 020520          224 FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNS--LLMITH  281 (325)
Q Consensus       224 LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~t--vIivtH  281 (325)
                      ||.++++|+..|...+.++++++.|+|...+     ..+...++++.+ .+..  +|+|-|
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQSV-----NYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            8899999999999888889999999886442     334444444432 2556  888866

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.11  E-value=4.6e-07  Score=90.41  Aligned_cols=43  Identities=28%  Similarity=0.412  Sum_probs=36.5

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEE-ECCEeC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVV-FKGENL  145 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~-~~g~~i  145 (325)
                      .+++|++++|+|+||||||||+++|+|.  +.|++| +|. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~--L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAAR--LMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHH--HHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHh--hcccCCceEEEECCcHH
Confidence            5789999999999999999999999997  556776 675 888654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.10  E-value=2.2e-06  Score=80.14  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=23.4

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+..+.|.||+|+|||||++.+++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            45788999999999999999999984

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.09  E-value=1.7e-06  Score=83.96  Aligned_cols=70  Identities=10%  Similarity=0.144  Sum_probs=48.7

Q ss_pred             hCCCEEEEeCcCcCCCH-HHHHHHHHHHHhccCCCcEEEEEeCCh-hHHhhhCCcEEEE-EeCCEEEEEcCccH
Q 020520          240 LGADLAILDEIDSGLDV-DALRDVAKAVNGLLTPKNSLLMITHYR-RLLEFIKPTFIHI-MEDGRIIKTGDASI  310 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvIivtHd~-~~~~~~~~d~i~v-l~~G~iv~~g~~~~  310 (325)
                      .+|++|++||+..-.+. ..++.++..+..+.+.|..||++||+. ..+..+ .+++.- +..|.++...+++.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l-~~~L~sR~~~g~~i~l~~p~~  265 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF-QDRLVSRFQMGLVAKLEPPDE  265 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC-CHHHHHHHHSSBCCBCCCCCH
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH-HHHHHhhccCCeEEEeCCCCH
Confidence            48999999999887764 678889999988877788999999973 322222 232221 45577666666654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.08  E-value=5.3e-06  Score=80.07  Aligned_cols=59  Identities=17%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL  146 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~  146 (325)
                      .+++++.|+..  .  ++++|+  +|++++++|+|||||||++..|++.  +.+..|+|.+.+.|+.
T Consensus        79 ~~~L~~~~~~~--~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           79 YEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             HHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECCSS
T ss_pred             HHHHHHHhCCC--c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeecccc
Confidence            34566677532  2  678887  8999999999999999999999997  5567789988776654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.01  E-value=2.1e-07  Score=81.42  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=29.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEE
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVF  140 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~  140 (325)
                      +.+++|+|++||||||++++|++... ..++.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            56899999999999999999997411 1467888876

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.01  E-value=3.1e-06  Score=73.08  Aligned_cols=28  Identities=36%  Similarity=0.369  Sum_probs=26.3

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++++|++++|+|++|||||||++.|++.
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5778999999999999999999999996

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.98  E-value=3.6e-06  Score=69.50  Aligned_cols=32  Identities=34%  Similarity=0.561  Sum_probs=26.5

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++.++++.+| +.+|+|||||||||++.+|.-
T Consensus        14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            45566777665 999999999999999999874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.97  E-value=6.2e-05  Score=68.30  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCH----------HHHHHHHHHHHhccC----CCcEEEEEeCChh
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDV----------DALRDVAKAVNGLLT----PKNSLLMITHYRR  284 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~----------~~~~~i~~~L~~l~~----~g~tvIivtHd~~  284 (325)
                      +++++.|..++.+...+|.+|++||+.+-++.          .....++..+..+..    .+..||.+|++++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            56778888888888889999999999877653          333445566655532    2346777888754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.95  E-value=2.8e-06  Score=70.87  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .|++++|+|+||||||||+++|++.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999995

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.93  E-value=7.8e-07  Score=84.50  Aligned_cols=51  Identities=16%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             cEEEEEEEEEECCCccccee--------------eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520           77 LLQVTGLTAVIAESKQEILK--------------GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~--------------~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+.++||++.|+. .+..|+              |+.+.|.+|+.++|+||+|+|||||++.|++.
T Consensus       133 ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          133 KILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             SCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CceeccccccCCC-CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            5788999999985 467888              89999999999999999999999999999884

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.90  E-value=5.3e-07  Score=84.59  Aligned_cols=64  Identities=13%  Similarity=0.062  Sum_probs=48.7

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      ++.+++.+.|+  .+.+++++++.+.+|.+++|+|++|+|||||++.|+|.  +.+..|+|.+-+.+.
T Consensus        31 ie~~~~~~~~~--~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~--~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           31 VESRHPRHQAL--STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML--LIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHCCCHHHHHH--HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH--HHHTTCCEEEEEECC
T ss_pred             hhcCCchhhhH--HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEeecC
Confidence            33444444553  25688999999999999999999999999999999986  445567777655544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.88  E-value=9.7e-05  Score=65.02  Aligned_cols=42  Identities=12%  Similarity=0.048  Sum_probs=30.0

Q ss_pred             hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC--CCcEEEEEeC
Q 020520          240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLT--PKNSLLMITH  281 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~--~g~tvIivtH  281 (325)
                      .+++++|+..+.+.++......+..++..+..  ...++|+++|
T Consensus       111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK  154 (239)
T 3lxx_A          111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR  154 (239)
T ss_dssp             TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence            47899999999888888766666555543321  1248899999

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.76  E-value=4.3e-06  Score=78.68  Aligned_cols=41  Identities=15%  Similarity=0.065  Sum_probs=33.0

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      .++.+++|+|++|||||||++.|+|.  ..+..|+|.+.+.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~--~~~~~~~v~V~~~dp  112 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKM--LTERGHKLSVLAVDP  112 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEECCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHH--hhhcCCeEEEEeecC
Confidence            45789999999999999999999996  445667777766544

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.74  E-value=9.5e-06  Score=71.73  Aligned_cols=45  Identities=22%  Similarity=0.244  Sum_probs=30.6

Q ss_pred             ceeeeEEEEe---CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEEC
Q 020520           94 ILKGVNLLVN---EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFK  141 (325)
Q Consensus        94 iL~~vsl~i~---~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~  141 (325)
                      -|.++|+.+.   +|.+++|.|++||||||+++.|+..  +.+ .+.+...
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~--l~~-~~~~~~~   59 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR--LVK-DYDVIMT   59 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH--HTT-TSCEEEE
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH--Hhc-CCCceee
Confidence            4677777776   8999999999999999999999996  444 4566543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.71  E-value=4.4e-05  Score=73.96  Aligned_cols=161  Identities=14%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc-EEEECCEeCCCCCHHHHhhccEEEeccCCccCCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG-SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPG  170 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~  170 (325)
                      -..|+.+.--+.+|+++.|.|++|+|||||+..++..  .....| .|.+..-   ..+..+.....+.   +... ++ 
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~sl---E~~~~~l~~R~~~---~~~~-i~-  256 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSL---EMPAAQLTLRMMC---SEAR-ID-  256 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEES---SSCHHHHHHHHHH---HHTT-CC-
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEEC---CCCHHHHHHHHHH---HHcC-CC-
Confidence            3457776656999999999999999999999887763  111112 2332211   1222211100000   0000 00 


Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHH--hCCCEEEEe
Q 020520          171 VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAV--LGADLAILD  248 (325)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~--~~p~lLlLD  248 (325)
                                  .  .......... +.+.++...+..+....-+.+.. + .+|..+.  .+.+|.+.  .+++++|+|
T Consensus       257 ------------~--~~l~~g~l~~-~~~~~~~~a~~~l~~~~l~i~d~-~-~~s~~~l--~~~~~~l~~~~~~~lIvID  317 (444)
T 2q6t_A          257 ------------M--NRVRLGQLTD-RDFSRLVDVASRLSEAPIYIDDT-P-DLTLMEV--RARARRLVSQNQVGLIIID  317 (444)
T ss_dssp             ------------T--TTCCGGGCCH-HHHHHHHHHHHHHHTSCEEEECC-T-TCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred             ------------H--HHHhCCCCCH-HHHHHHHHHHHHHhcCCEEEECC-C-CCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence                        0  0000000111 22333333333332211122222 2 3777665  34556565  479999999


Q ss_pred             CcCcCCCH----------HHHHHHHHHHHhccCC-CcEEEEEeC
Q 020520          249 EIDSGLDV----------DALRDVAKAVNGLLTP-KNSLLMITH  281 (325)
Q Consensus       249 EPtsgLD~----------~~~~~i~~~L~~l~~~-g~tvIivtH  281 (325)
                      ..+.-.+.          .....+...|+.++++ +.+||+++|
T Consensus       318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq  361 (444)
T 2q6t_A          318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ  361 (444)
T ss_dssp             CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred             ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            99875543          1234566777777655 889999998

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.70  E-value=1.9e-05  Score=68.48  Aligned_cols=32  Identities=34%  Similarity=0.561  Sum_probs=26.2

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus        14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            44566777765 999999999999999998753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.68  E-value=9.6e-05  Score=67.70  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=25.2

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+.++..+.|.||+|+|||||+++|++.
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence            4567888999999999999999999985

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.65  E-value=3.4e-05  Score=65.42  Aligned_cols=51  Identities=20%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC--CC----CCCccEEEECCEe
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP--DY----EVTEGSVVFKGEN  144 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~--~~----~p~~G~I~~~g~~  144 (325)
                      .+++++++..++. .++|+|++|+|||||++.+.+-.  .+    .++.+.+.++|..
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~   68 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK   68 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence            4789999998887 67899999999999999998721  11    2335666666643

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.65  E-value=5e-06  Score=82.83  Aligned_cols=59  Identities=15%  Similarity=0.241  Sum_probs=45.8

Q ss_pred             EEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCE
Q 020520           80 VTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGE  143 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~  143 (325)
                      ++++.+.|.  ...++.++++++ +|+.++|+||||+|||||+++|++.  ..+..|+|.+.|.
T Consensus        86 ~~~vk~~i~--~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~~~i~~~~~  144 (543)
T 3m6a_A           86 LEKVKERIL--EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS--LGRKFVRISLGGV  144 (543)
T ss_dssp             CHHHHHHHH--HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH--HTCEEEEECCCC-
T ss_pred             HHHHHHHHH--HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh--cCCCeEEEEeccc
Confidence            445555553  245678888888 8999999999999999999999997  4567788877763

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.65  E-value=0.00049  Score=64.78  Aligned_cols=36  Identities=25%  Similarity=0.236  Sum_probs=28.4

Q ss_pred             ccceeeeE--EEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           92 QEILKGVN--LLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        92 ~~iL~~vs--l~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ...|+.+-  =-+++|+++.|.|++|+|||||...++.
T Consensus        48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~   85 (356)
T 1u94_A           48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA   85 (356)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34565552  1388999999999999999999987775

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.63  E-value=1e-05  Score=69.27  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=39.2

Q ss_pred             EEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCC--C----CCCCccEEEECCEe
Q 020520           84 TAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHP--D----YEVTEGSVVFKGEN  144 (325)
Q Consensus        84 s~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~--~----~~p~~G~I~~~g~~  144 (325)
                      +++|++ -..+++++++..+++ .++|+|++|+|||||++.+.+-.  .    ..++.+.+.++|..
T Consensus         6 ~~~~~~-~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A            6 DWIYSG-FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHH-HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            345654 346899999988887 57899999999999999998721  0    12345677777643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.62  E-value=7.6e-06  Score=70.96  Aligned_cols=41  Identities=24%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc--EEEECCE
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG--SVVFKGE  143 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G--~I~~~g~  143 (325)
                      .+.+|.+++|+|++||||||+.+.|++.  +.|..|  .+.+++.
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~--l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQ--LVRDRRVHAYRLDGD   63 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHH--HHHHHCCCEEEECHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHH--hccccCCcEEEECCh
Confidence            4568999999999999999999999996  444667  7777753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.62  E-value=2.4e-05  Score=65.80  Aligned_cols=39  Identities=28%  Similarity=0.401  Sum_probs=29.9

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCcc--EEEECCEe
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG--SVVFKGEN  144 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G--~I~~~g~~  144 (325)
                      .+|++++|+|++||||||+++.|++.  +.+ .|  .|.+++..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~--l~~-~g~~~i~~d~~~   43 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEY--LVC-HGIPCYTLDGDN   43 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEEEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH--Hhh-CCCcEEEECChH
Confidence            46899999999999999999999985  222 45  56666543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.57  E-value=5.5e-05  Score=73.18  Aligned_cols=39  Identities=26%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCC----------CCCCccEEEECCEeC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPD----------YEVTEGSVVFKGENL  145 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~----------~~p~~G~I~~~g~~i  145 (325)
                      .++|+|+||+|||||++.|+|...          ..+..|.+.++|+++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            799999999999999999999621          125679999999865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.56  E-value=3e-05  Score=65.71  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=25.8

Q ss_pred             eeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+...+|..++|+|++||||||+.+.|+.
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            5788888999999999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.55  E-value=3e-05  Score=66.79  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ...+|.+++|+||+|||||||.+.|+..
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999999874

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.53  E-value=3.2e-05  Score=66.24  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|+|+|||||||+++.|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999983

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.53  E-value=9.5e-05  Score=69.88  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=33.0

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~  126 (325)
                      ..+..|+..-    -..+++..+++.+| +.+|+|+|||||||++.+|.
T Consensus         3 M~l~~L~l~n----Fr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A            3 MILKEIRMNN----FKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEEEEE----ETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEeEEEEEc----cccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            3455555431    12457788888885 99999999999999999875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.48  E-value=7.8e-06  Score=77.26  Aligned_cols=45  Identities=24%  Similarity=0.404  Sum_probs=35.3

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+.+.|++..|++  +.++++++|+|      +|+|++|+|||||++.|.|.
T Consensus        16 ~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           16 GYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             -----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred             ceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence            36888999888853  56889999987      99999999999999999885

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.48  E-value=5e-05  Score=63.36  Aligned_cols=26  Identities=35%  Similarity=0.553  Sum_probs=22.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++|..++|+|++|+|||||++.|+|.
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            36788999999999999999999995

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.47  E-value=0.00014  Score=59.99  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|++|+|||||++.++|.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999995

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.42  E-value=9.4e-05  Score=61.86  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999983

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.40  E-value=1e-05  Score=74.48  Aligned_cols=60  Identities=20%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             EEEEEEEECCCcccceee-eEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCC
Q 020520           80 VTGLTAVIAESKQEILKG-VNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLL  146 (325)
Q Consensus        80 ~~~ls~~y~~~~~~iL~~-vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~  146 (325)
                      .+++...|++.  .  ++ ++|+.+ |++++++|+||+||||++..|++.  +.+..|+|.+.+.+..
T Consensus        77 ~~~l~~~~~~~--~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           77 YDELSNLFGGD--K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVY  137 (297)
T ss_dssp             HHHHHHHTTCS--C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCS
T ss_pred             HHHHHHHhccc--c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence            45566666532  1  56 777766 999999999999999999999996  4456778888776653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.40  E-value=3.7e-05  Score=65.00  Aligned_cols=35  Identities=29%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEE
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSV  138 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I  138 (325)
                      ..+|.+++|+|++||||||+.+.|+..  +.+..|.+
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~--l~~~~~~~   44 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADL--LQKEGYRV   44 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCE
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeE
Confidence            357899999999999999999999985  33334544

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.39  E-value=0.00027  Score=65.02  Aligned_cols=43  Identities=14%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             hCCCEEEEeCcCcC-CCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020520          240 LGADLAILDEIDSG-LDVDALRDVAKAVNGLLTPKNSLLMITHY  282 (325)
Q Consensus       240 ~~p~lLlLDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvIivtHd  282 (325)
                      .++++|++||+-.- -+....+.+...+..+...+..+|++++.
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~  140 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR  140 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            56999999998652 34477888888888876666667777663

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.30  E-value=9e-05  Score=63.42  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+++|+|++||||||+.+.|++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999884

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.29  E-value=7e-05  Score=68.81  Aligned_cols=57  Identities=7%  Similarity=0.018  Sum_probs=39.7

Q ss_pred             CChHHHHHHHHHHHHH--hCCCEEEEeCcCcCCCHHH-HHHHHHHHHhccCC-Cc--EEEEEeCChhHHh
Q 020520          224 FSGGERKRNEILQLAV--LGADLAILDEIDSGLDVDA-LRDVAKAVNGLLTP-KN--SLLMITHYRRLLE  287 (325)
Q Consensus       224 LSgGqrQRv~iAraL~--~~p~lLlLDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvIivtHd~~~~~  287 (325)
                      +|+|++   .+++++.  ..|.++++    +.+|... +..+.+.+.++.+. +.  .+.+++|+-+-+.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~  163 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD  163 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence            888886   5666676  67889998    7899876 66777778777653 43  5556666644333

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.27  E-value=0.00011  Score=61.71  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999985

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.24  E-value=2.7e-05  Score=73.22  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.6

Q ss_pred             cceeeeEEEEeCCCE--EEEEcCCCccHHHHHHHHhCC
Q 020520           93 EILKGVNLLVNEGEV--HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            477888888999999  999999999999999999984

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.21  E-value=0.00016  Score=63.74  Aligned_cols=26  Identities=35%  Similarity=0.348  Sum_probs=23.5

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -.+|.+++|+|++||||||+.+.|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999999986

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.21  E-value=0.00016  Score=69.07  Aligned_cols=42  Identities=24%  Similarity=0.226  Sum_probs=32.3

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCC---------CCCCccEEEECC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPD---------YEVTEGSVVFKG  142 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~---------~~p~~G~I~~~g  142 (325)
                      .+..|..++|+|+||+|||||++.|+|...         ..|..|.+.+.+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            446788899999999999999999999510         346778887765

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.17  E-value=3.1e-05  Score=72.10  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=34.1

Q ss_pred             ccceeeeEEEEeCCCE--EEEEcCCCccHHHHHHHHhCC
Q 020520           92 QEILKGVNLLVNEGEV--HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+++.++..++.|++  +.+.||+|+||||+++++++.
T Consensus        31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4688889999999998  999999999999999999995

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.13  E-value=0.00023  Score=59.73  Aligned_cols=22  Identities=41%  Similarity=0.575  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|++|+|||||++.++|.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999995

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.12  E-value=0.00024  Score=58.60  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|+|++||||||+.+.|+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999863

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.12  E-value=0.00027  Score=58.89  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      |.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999999999974

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.09  E-value=0.00015  Score=64.48  Aligned_cols=32  Identities=25%  Similarity=0.527  Sum_probs=22.9

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520           95 LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        95 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++++++.+..|  +.|+||+|+|||||+++|++.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence            33444444555  889999999999999999985

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.07  E-value=0.00025  Score=60.01  Aligned_cols=39  Identities=23%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCC-CCCCccEEEECCEe
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPD-YEVTEGSVVFKGEN  144 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~-~~p~~G~I~~~g~~  144 (325)
                      .+++|+|++|||||||++.|.+... ....-|.|..++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            5899999999999999999988411 11124677776544

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.01  E-value=0.00021  Score=67.87  Aligned_cols=47  Identities=15%  Similarity=0.094  Sum_probs=40.5

Q ss_pred             CCCEEEEeCcCcCCC---HHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020520          241 GADLAILDEIDSGLD---VDALRDVAKAVNGLLTPKNSLLMITHYRRLLE  287 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~  287 (325)
                      .|.++++||.=.-++   +...+.+.+.+++.++.|..++++||++..+.
T Consensus       262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~  311 (392)
T 4ag6_A          262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL  311 (392)
T ss_dssp             TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred             ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence            588999999988884   67888889999998888899999999987653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.01  E-value=0.00037  Score=58.41  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      |.+++|.|++||||||+.+.|+-
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999999986

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.96  E-value=0.00039  Score=57.07  Aligned_cols=19  Identities=53%  Similarity=0.711  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHH
Q 020520          107 VHAIMGKNGSGKSTLSKVL  125 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l  125 (325)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.95  E-value=0.0032  Score=59.41  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=24.1

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -+++|+++.|.|+.|+|||||+..++-
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999999999977664

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.94  E-value=0.00033  Score=62.60  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|+||+|||||||.+.|++.
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            6899999999999999999873

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.92  E-value=0.00036  Score=58.73  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.4

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+.++.|+|++||||||+.+.|+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3577899999999999999999976

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.91  E-value=0.00044  Score=61.28  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .-+++|.||+||||||+.+.|+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999985

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.91  E-value=0.00046  Score=59.69  Aligned_cols=25  Identities=32%  Similarity=0.392  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+-+++|+|++||||||+.+.|+.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~l   27 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFADL   27 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHc
Confidence            3568999999999999999999873

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.88  E-value=0.0005  Score=58.24  Aligned_cols=22  Identities=41%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999983

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.87  E-value=0.00047  Score=58.93  Aligned_cols=20  Identities=50%  Similarity=0.634  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.|+||||||||||++.|..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.85  E-value=0.00044  Score=57.62  Aligned_cols=22  Identities=41%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|++||||||+.+.|+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999873

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.85  E-value=0.0006  Score=57.12  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+..+.|+|++||||||+.+.|+.
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999975

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.83  E-value=0.00054  Score=57.29  Aligned_cols=25  Identities=32%  Similarity=0.296  Sum_probs=22.2

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+.++.|+|++||||||+.+.|+-
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3577899999999999999999983

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.82  E-value=0.00037  Score=62.12  Aligned_cols=41  Identities=17%  Similarity=0.412  Sum_probs=32.0

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      ....+.++.|+|++||||||+.+.|+..  +.  .+.+.+++..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~--l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKE--FQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHH--TT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHh--cC--CCcEEEecHHH
Confidence            4566789999999999999999999985  21  35677777544

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.82  E-value=0.00031  Score=60.27  Aligned_cols=22  Identities=45%  Similarity=0.640  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|.|++||||||+++.|+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.82  E-value=0.0013  Score=55.22  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC---CCCCCCcc----EEEECCEe
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH---PDYEVTEG----SVVFKGEN  144 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl---~~~~p~~G----~I~~~g~~  144 (325)
                      .++|+|++|+|||||++.+.+-   ..+.|+.|    .+.++|..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   66 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS   66 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence            4889999999999999766552   12456666    66777754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.81  E-value=0.00062  Score=56.47  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.79  E-value=0.00073  Score=57.38  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +|-+++|+|+.||||||+.+.|+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999974

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.77  E-value=0.00065  Score=57.61  Aligned_cols=23  Identities=39%  Similarity=0.510  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+++|+|++||||||+.+.|+.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999997

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.73  E-value=0.00082  Score=57.45  Aligned_cols=25  Identities=44%  Similarity=0.553  Sum_probs=22.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+|-+++|.|+.||||||+.+.|+-
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999999975

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.73  E-value=0.00079  Score=57.37  Aligned_cols=25  Identities=36%  Similarity=0.520  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +|.+++|.|+.||||||+.+.|+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999873

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.72  E-value=0.0007  Score=60.82  Aligned_cols=40  Identities=8%  Similarity=0.088  Sum_probs=28.8

Q ss_pred             cCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhh
Q 020520          250 IDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFI  289 (325)
Q Consensus       250 PtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~  289 (325)
                      |||+++..+...+.+.+.++..+ ..+..+.+|..+.+...
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~  184 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIERE  184 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHH
Confidence            99999999999999888876533 34445566766655544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.72  E-value=0.0012  Score=62.37  Aligned_cols=38  Identities=32%  Similarity=0.315  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCCC---------CCCCCccEEEECC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGHP---------DYEVTEGSVVFKG  142 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl~---------~~~p~~G~I~~~g  142 (325)
                      |-.++|+|.+|+|||||++.|+|-.         ...|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            4578999999999999999999831         1346778887765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.70  E-value=0.00085  Score=56.53  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++.+++|+|+.||||||+.+.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3577999999999999999999985

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.70  E-value=0.00065  Score=61.92  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG  142 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g  142 (325)
                      .|.++.|.||+||||||+.+.|+.-  + + .|.+.+++
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~--~-~-~~~~~Is~   66 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEE--T-Q-GNVIVIDN   66 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH--T-T-TCCEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH--h-C-CCeEEEec
Confidence            4678999999999999999999863  2 1 35566664

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.68  E-value=0.00086  Score=56.23  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.+++|+|+.||||||+.+.|+-
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.67  E-value=0.00093  Score=57.15  Aligned_cols=26  Identities=35%  Similarity=0.486  Sum_probs=23.1

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+|-+++|.|+.||||||+.+.|+-
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999999985

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.62  E-value=0.00095  Score=55.88  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|.|+.||||||+.+.|+-
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.62  E-value=0.0009  Score=56.92  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|.|++||||||+.+.|+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999883

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.60  E-value=0.0086  Score=66.52  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=25.7

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~  755 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAA  755 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence            3899999999999999999999988773

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.60  E-value=0.00097  Score=56.11  Aligned_cols=23  Identities=35%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+++|+|++|||||||+..|++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999988874

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.55  E-value=0.00087  Score=55.87  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=17.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++.++.|.|++||||||+.+.|+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999985

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.54  E-value=0.0008  Score=59.05  Aligned_cols=60  Identities=23%  Similarity=0.216  Sum_probs=36.3

Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCc-CCCHHHHHHHHHHHHhccCCCcEEEEE-eCChhHH
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDS-GLDVDALRDVAKAVNGLLTPKNSLLMI-THYRRLL  286 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvIiv-tHd~~~~  286 (325)
                      +.|...+...  ..+.+-+++|+||.-. ++|.......++.+.....+-.+++++ |.+.+..
T Consensus       162 Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~  223 (235)
T 3llm_A          162 TVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMF  223 (235)
T ss_dssp             EHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHH
T ss_pred             CHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHH
Confidence            5577666543  3578999999999976 687776644444444433333344444 4554443

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.51  E-value=0.013  Score=56.60  Aligned_cols=35  Identities=11%  Similarity=0.083  Sum_probs=28.3

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .-|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus       185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            34555544589999999999999999999877665

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0012  Score=55.24  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999984

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.49  E-value=0.0014  Score=55.35  Aligned_cols=25  Identities=36%  Similarity=0.488  Sum_probs=22.7

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+-+++|+|+.||||||+.+.|+.
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999999986

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.46  E-value=0.021  Score=55.06  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++.+++++|++|+||||++..|+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~  123 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARY  123 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHH
Confidence            4679999999999999999988874

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.46  E-value=0.0014  Score=53.24  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.|.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4789999999999999999984

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.45  E-value=0.0014  Score=54.73  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|++|+|||||++.+.+-
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999984

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.44  E-value=0.0015  Score=56.06  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999965

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.44  E-value=0.0017  Score=56.08  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +|-+++|+|+.||||||+.+.|+-
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999986

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.42  E-value=0.0016  Score=58.89  Aligned_cols=22  Identities=36%  Similarity=0.678  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|++|+|||||++.++|.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999994

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.41  E-value=0.0018  Score=52.98  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.|-
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4899999999999999999984

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.40  E-value=0.0017  Score=56.57  Aligned_cols=25  Identities=36%  Similarity=0.389  Sum_probs=21.4

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++-+++|+|+.||||||+.+.|+-
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999985

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.40  E-value=0.0017  Score=54.40  Aligned_cols=21  Identities=43%  Similarity=0.531  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.40  E-value=0.0015  Score=52.85  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999873

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.39  E-value=0.0018  Score=52.51  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999883

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.38  E-value=0.0019  Score=52.54  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.36  E-value=0.0015  Score=53.85  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+++|+|+.||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999986

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.36  E-value=0.0017  Score=52.33  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999984

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.35  E-value=0.0019  Score=53.00  Aligned_cols=21  Identities=33%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999976

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.35  E-value=0.0019  Score=53.06  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999984

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.35  E-value=0.0019  Score=55.60  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999975

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.34  E-value=0.0016  Score=52.35  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.34  E-value=0.0018  Score=54.20  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999984

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.34  E-value=0.0021  Score=53.03  Aligned_cols=22  Identities=36%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|+|+.||||||+.+.|+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999976

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.33  E-value=0.0025  Score=58.90  Aligned_cols=35  Identities=34%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ...+++..+.+ .|.-++|+|+||+|||||...|.+
T Consensus       132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            35788888888 788999999999999999998887

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.33  E-value=0.0022  Score=54.53  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +-+++|+|+.||||||+.+.|+.
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            55899999999999999999976

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.33  E-value=0.0024  Score=52.43  Aligned_cols=25  Identities=32%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999883

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.32  E-value=0.0017  Score=54.38  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -+++|+|+.||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.31  E-value=0.0019  Score=53.79  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999984

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.31  E-value=0.0019  Score=52.14  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999886

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.31  E-value=0.0019  Score=53.98  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.+++|+|+.||||||+.+.|+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999976

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.30  E-value=0.0019  Score=52.13  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999873

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.29  E-value=0.0015  Score=54.04  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .-.++|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999885

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.28  E-value=0.002  Score=52.34  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999884

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.28  E-value=0.0018  Score=56.11  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+-++.|+|+.||||||+.+.|+-
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999986

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.28  E-value=0.002  Score=52.40  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999873

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.28  E-value=0.0021  Score=54.70  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+++|.|+.||||||+.+.|+-
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999985

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.28  E-value=0.0021  Score=56.99  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -+++|.|+.||||||+.+.|+.
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999976

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.26  E-value=0.0022  Score=57.29  Aligned_cols=24  Identities=38%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++.++.|+|++||||||+.+.|+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            466899999999999999999976

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.26  E-value=0.002  Score=52.88  Aligned_cols=22  Identities=32%  Similarity=0.518  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998873

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.26  E-value=0.0022  Score=53.29  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999999984

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.26  E-value=0.0023  Score=54.81  Aligned_cols=22  Identities=41%  Similarity=0.617  Sum_probs=20.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -+++|+|..||||||+.+.|+-
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.26  E-value=0.0021  Score=52.00  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999987

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.25  E-value=0.0021  Score=52.08  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.24  E-value=0.002  Score=52.33  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.21  E-value=0.002  Score=52.82  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.21  E-value=0.0022  Score=52.54  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999873

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.20  E-value=0.0029  Score=54.56  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+..+.|.||+|+|||||++.++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            5788999999999999999999873

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.14  E-value=0.0026  Score=51.52  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999986

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.14  E-value=0.0025  Score=52.71  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999873

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.13  E-value=0.0025  Score=53.12  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999984

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.13  E-value=0.0026  Score=51.70  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999976

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.13  E-value=0.0025  Score=54.00  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.12  E-value=0.0026  Score=53.23  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999883

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.12  E-value=0.003  Score=51.81  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999873

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.12  E-value=0.0013  Score=60.08  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++-+++|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999986

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.11  E-value=0.0027  Score=52.67  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999873

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.11  E-value=0.0029  Score=57.97  Aligned_cols=22  Identities=50%  Similarity=0.604  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|.+|+|||||++.|.|-
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999994

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.09  E-value=0.0027  Score=52.82  Aligned_cols=22  Identities=27%  Similarity=0.176  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.|.
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999985

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.09  E-value=0.0026  Score=57.13  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|.+|+|||||++.|.|-
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3889999999999999999884

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.09  E-value=0.0028  Score=51.19  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999999976

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.08  E-value=0.0031  Score=54.86  Aligned_cols=21  Identities=38%  Similarity=0.523  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999975

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.06  E-value=0.0028  Score=57.39  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .-+++|+|+.||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999984

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.06  E-value=0.003  Score=51.69  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999999874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.05  E-value=0.096  Score=58.31  Aligned_cols=35  Identities=26%  Similarity=0.241  Sum_probs=27.6

Q ss_pred             cceeeeEE--EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           93 EILKGVNL--LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        93 ~iL~~vsl--~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .-|+.+-=  -+++|.++.|.||.|+|||||+..++.
T Consensus       369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~  405 (1706)
T 3cmw_A          369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA  405 (1706)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            34555421  388999999999999999999877665

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.05  E-value=0.003  Score=52.66  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999999873

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.05  E-value=0.0028  Score=51.89  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999986

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.05  E-value=0.0032  Score=55.69  Aligned_cols=24  Identities=33%  Similarity=0.306  Sum_probs=21.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++-+++|+|+.||||||+.+.|+-
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.05  E-value=0.003  Score=52.06  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999999873

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.04  E-value=0.0018  Score=58.64  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+.|.||+|+|||||+++|++.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            57999999999999999999995

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.04  E-value=0.0031  Score=51.84  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.04  E-value=0.0031  Score=56.33  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.|+|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999994

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.03  E-value=0.016  Score=56.60  Aligned_cols=68  Identities=19%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             CCChHHHHHHHHHHH--HHh---------------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020520          223 GFSGGERKRNEILQL--AVL---------------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       223 ~LSgGqrQRv~iAra--L~~---------------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~  285 (325)
                      .+||||+|-.-+|.+  +++               .=.+++|||+ +-+|.+..+..+++++++   |.-+|++|=+  .
T Consensus       379 ~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~--~  452 (483)
T 3euj_A          379 ALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE--N  452 (483)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS--S
T ss_pred             CCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc--h
Confidence            499999996544433  322               1247999999 999999999999999987   6678889986  3


Q ss_pred             HhhhCCcEEEEE
Q 020520          286 LEFIKPTFIHIM  297 (325)
Q Consensus       286 ~~~~~~d~i~vl  297 (325)
                      +... .|.++.+
T Consensus       453 i~p~-v~~~~~~  463 (483)
T 3euj_A          453 ISPE-RGTTYKL  463 (483)
T ss_dssp             CCCS-SSEEEEC
T ss_pred             hhhc-cCceEEE
Confidence            3333 3555544

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.01  E-value=0.0021  Score=55.10  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++|+|+.|+|||||++.|.|-
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            46899999999999999999984

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.00  E-value=0.0037  Score=51.85  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.=.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3446899999999999999999874

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.99  E-value=0.0036  Score=57.45  Aligned_cols=22  Identities=50%  Similarity=0.611  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|+|..|+|||||++.|.|-
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7999999999999999999994

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.97  E-value=0.0033  Score=53.76  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999984

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.97  E-value=0.0035  Score=55.56  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.|.|-
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.96  E-value=0.0034  Score=51.57  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.95  E-value=0.0032  Score=52.06  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5799999999999999999873

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.94  E-value=0.0044  Score=52.58  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+.|.||+|+|||||++.|+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999999874

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.94  E-value=0.0029  Score=59.77  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|++|+|||||++.|+|.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999984

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.94  E-value=0.0035  Score=52.89  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.94  E-value=0.0036  Score=52.73  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999873

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.92  E-value=0.0038  Score=53.74  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999976

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.91  E-value=0.0037  Score=51.61  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999873

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.91  E-value=0.0034  Score=52.19  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999873

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.91  E-value=0.0037  Score=52.15  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999883

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.91  E-value=0.0047  Score=50.88  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+..+.|.||.|+|||||++.++..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999873

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.90  E-value=0.0034  Score=52.45  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999884

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.90  E-value=0.0041  Score=52.21  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999883

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.90  E-value=0.0038  Score=52.08  Aligned_cols=22  Identities=14%  Similarity=0.247  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.87  E-value=0.0036  Score=52.37  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            589999999999999999987

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.87  E-value=0.0047  Score=52.09  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999884

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.87  E-value=0.004  Score=52.57  Aligned_cols=21  Identities=38%  Similarity=0.757  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|.+|+|||||++.+.|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999987

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.86  E-value=0.0042  Score=58.00  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+++|+||+|||||||.+.|+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            37999999999999999999874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.85  E-value=0.0045  Score=51.78  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999984

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.85  E-value=0.0041  Score=51.23  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999886

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.85  E-value=0.0045  Score=55.29  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.|+|-
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999994

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.84  E-value=0.0046  Score=53.55  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999983

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.84  E-value=0.0038  Score=52.39  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.84  E-value=0.0046  Score=53.39  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      |-.+.|+|+.||||||+.+.|+-
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999999976

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.83  E-value=0.0046  Score=51.49  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      =.++|+|+.|+|||||++.+.+
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999996

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.82  E-value=0.0044  Score=56.04  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++.|+|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999985

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.82  E-value=0.0043  Score=55.87  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.|+|-
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999994

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.82  E-value=0.0039  Score=52.72  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999999984

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.82  E-value=0.0046  Score=52.31  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999999873

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.81  E-value=0.0041  Score=51.28  Aligned_cols=21  Identities=38%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999999984

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.80  E-value=0.004  Score=53.42  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++|+|+.|+|||||++.|++-
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            36899999999999999998873

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.79  E-value=0.0044  Score=51.67  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        22 ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999986

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.79  E-value=0.0043  Score=51.46  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999983

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.78  E-value=0.0045  Score=51.77  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4889999999999999999873

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0042  Score=52.00  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999999883

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.77  E-value=0.005  Score=58.99  Aligned_cols=26  Identities=31%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -....++.|+|++||||||+.+.|+.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999999999876

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.76  E-value=0.004  Score=54.76  Aligned_cols=27  Identities=22%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+|-++.|.|+.||||||+++.|.-.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999998763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.75  E-value=0.0048  Score=50.72  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      =.++|+|+.|+|||||++.+.+
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999987

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.75  E-value=0.0047  Score=51.71  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5889999999999999999884

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.75  E-value=0.0047  Score=56.22  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|||||||++.|+|.
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEcCCCCCHHHHHHHHHCC
Confidence            5899999999999999999995

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.75  E-value=0.0043  Score=52.89  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999998876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.74  E-value=0.007  Score=52.25  Aligned_cols=35  Identities=31%  Similarity=0.355  Sum_probs=28.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ...++..-+.+ .|..+.|+||+|+|||||...|+.
T Consensus        22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred             ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567666665 578899999999999999999886

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.73  E-value=0.0056  Score=53.23  Aligned_cols=26  Identities=31%  Similarity=0.389  Sum_probs=22.7

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+|-+++|.|+.||||||+++.|.-.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~   29 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAER   29 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            36889999999999999999998763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.72  E-value=0.005  Score=51.46  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        24 ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999987

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.71  E-value=0.0058  Score=54.07  Aligned_cols=25  Identities=36%  Similarity=0.484  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +|.+++|.|++||||||+++.|...
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~   50 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVET   50 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999998763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.70  E-value=0.0056  Score=51.56  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.+.+-
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5889999999999999999883

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0051  Score=51.15  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.70  E-value=0.0047  Score=52.29  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.70  E-value=0.0063  Score=53.14  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+-.+.|+|+.||||||+.+.|+-
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999986

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.69  E-value=0.0061  Score=51.26  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.68  E-value=0.006  Score=52.04  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999984

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.68  E-value=0.0056  Score=57.06  Aligned_cols=25  Identities=40%  Similarity=0.628  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++.++.|+||+|||||||...|+--
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999984

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.68  E-value=0.0053  Score=51.80  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.67  E-value=0.0041  Score=51.08  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999873

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.67  E-value=0.0053  Score=51.58  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.66  E-value=0.0054  Score=51.96  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999873

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.65  E-value=0.0058  Score=52.35  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        36 ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999999987

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.64  E-value=0.006  Score=56.32  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.+++|+||+|||||||...|+--
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            457899999999999999999873

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.61  E-value=0.0059  Score=54.42  Aligned_cols=22  Identities=36%  Similarity=0.661  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.|.|-
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999984

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.60  E-value=0.0057  Score=52.53  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +-+++|+|+.||||||+.+.|+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999873

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.60  E-value=0.0053  Score=52.20  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999883

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.60  E-value=0.0039  Score=53.28  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999863

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.60  E-value=0.06  Score=60.76  Aligned_cols=26  Identities=31%  Similarity=0.532  Sum_probs=24.1

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|.++.|.||.|+|||||+..++.
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~  405 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIA  405 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999999999877765

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.59  E-value=0.0054  Score=52.42  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999884

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.59  E-value=0.0069  Score=52.67  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +|.++.+-|+.||||||+++.|.-.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~   26 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVET   26 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999998874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.58  E-value=0.0063  Score=56.40  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+++|+||+|||||||.+.|+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999999974

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.58  E-value=0.0059  Score=54.95  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.|.|.
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHHCC
Confidence            6899999999999999999995

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.58  E-value=0.0062  Score=54.48  Aligned_cols=22  Identities=36%  Similarity=0.663  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++|+.|+|||||++.|.|-
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999984

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.57  E-value=0.006  Score=51.01  Aligned_cols=21  Identities=38%  Similarity=0.632  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999988876

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.57  E-value=0.0068  Score=58.93  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+++.+ +.+-+|+..+|+|++|+|||||++.|++.
T Consensus       139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred             chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence            3456666 67789999999999999999999998873

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.57  E-value=0.006  Score=51.92  Aligned_cols=22  Identities=27%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999873

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.57  E-value=0.0062  Score=51.23  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      =.++|+|+.|+|||||++.+.+
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999986

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.56  E-value=0.006  Score=50.21  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+..+.|.||.|+|||||++.++..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3556789999999999999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.55  E-value=0.0043  Score=51.25  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=9.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998873

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.55  E-value=0.0071  Score=55.55  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=24.6

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -+++|+++.|.|++|+|||||+..++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999987774

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.53  E-value=0.0079  Score=51.28  Aligned_cols=43  Identities=14%  Similarity=0.192  Sum_probs=32.8

Q ss_pred             hCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          240 LGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       240 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      .+|.+|++||.-. +|......+.+.+.+. ..+..+|++|++..
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~  167 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ  167 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence            3578999999765 7888888888888654 23567888888754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.49  E-value=0.0077  Score=52.05  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|.+|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.48  E-value=0.0062  Score=51.48  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999987

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.48  E-value=0.0073  Score=54.02  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=22.9

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+.-+.|.||+|+|||||++.++..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            45667999999999999999999984

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.47  E-value=0.0071  Score=53.03  Aligned_cols=24  Identities=33%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      |-+++|.|..||||||+++.|+-.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            568999999999999999999874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.45  E-value=0.0059  Score=54.33  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++-+++|.|+.||||||+++.|+-.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            56789999999999999999999874

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.45  E-value=0.0073  Score=54.17  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++++|.+|+|||||++.|.|-
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~  122 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGK  122 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             hheEEeCCCCCCHHHHHHHHhcc
Confidence            57899999999999999999995

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.43  E-value=0.0082  Score=52.36  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+|.++.+-|+.||||||+++.|.-.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~   28 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKK   28 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999999884

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.41  E-value=0.0084  Score=52.58  Aligned_cols=26  Identities=31%  Similarity=0.355  Sum_probs=23.2

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+|-++++.|+.||||||+.+.|...
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999998763

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.39  E-value=0.007  Score=50.58  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.36  E-value=0.0072  Score=51.96  Aligned_cols=21  Identities=38%  Similarity=0.574  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++-+++
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999988876

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.35  E-value=0.0063  Score=50.65  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        24 ~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999976

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.34  E-value=0.0068  Score=58.63  Aligned_cols=21  Identities=43%  Similarity=0.635  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|.+|+|||||++.|+|
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEE
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            799999999999999999998

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.29  E-value=0.0022  Score=59.04  Aligned_cols=42  Identities=19%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      ++.++++|| ...|+......+.+.+.+... ...+|+++++..
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence            567999999 788999999999999988643 345677777654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.28  E-value=0.012  Score=51.04  Aligned_cols=60  Identities=20%  Similarity=0.258  Sum_probs=37.6

Q ss_pred             HHhCCCEEEEeCcCcC----CCHHHHHHHHHHHHhccCC-CcEEEEEeCChhH----------HhhhCCcEEEEEe
Q 020520          238 AVLGADLAILDEIDSG----LDVDALRDVAKAVNGLLTP-KNSLLMITHYRRL----------LEFIKPTFIHIME  298 (325)
Q Consensus       238 L~~~p~lLlLDEPtsg----LD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~----------~~~~~~d~i~vl~  298 (325)
                      --.+++++++|--+.-    -|.....++...|+.++++ +.++++++|-.+.          .... +|-|+.|+
T Consensus       132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~-aD~vi~l~  206 (251)
T 2zts_A          132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI-ARGVIVLD  206 (251)
T ss_dssp             HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG-CSEEEEEE
T ss_pred             HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEE-eeEEEEEE
Confidence            3458999999964421    1444555666777776654 8899999885321          2233 68777764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.24  E-value=0.015  Score=49.06  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +..++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus         4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34556555555 577899999999999999987754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.21  E-value=0.01  Score=54.73  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+++|+||+|||||||...|+-.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            357899999999999999999873

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.21  E-value=0.01  Score=51.87  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=22.8

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.+..++.|+||.||||+|..+.|+-
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45567899999999999999999986

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.19  E-value=0.0087  Score=50.68  Aligned_cols=22  Identities=14%  Similarity=0.244  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            4799999999999999999873

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.18  E-value=0.0043  Score=52.24  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=4.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999998873

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.17  E-value=0.009  Score=50.72  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            588999999999999988875

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.0099  Score=51.15  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.14  E-value=0.011  Score=51.92  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..-+.|.||.|+|||||++.++..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            445889999999999999999873

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.08  E-value=0.011  Score=50.78  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5889999999999999998873

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.03  E-value=0.012  Score=47.49  Aligned_cols=39  Identities=10%  Similarity=0.007  Sum_probs=28.0

Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH  281 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH  281 (325)
                      +..+|++||. ..|++..+..+++.|.... ....+|.+|+
T Consensus        76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~-~~~~~I~~t~  114 (145)
T 3n70_A           76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEH-RPFRLIGIGD  114 (145)
T ss_dssp             TTSCEEEECG-GGSCHHHHHHHHHHHHSSS-CSSCEEEEES
T ss_pred             CCcEEEEcCh-HHCCHHHHHHHHHHHhhcC-CCEEEEEECC
Confidence            3467999998 4688888888888885433 3345666666

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.96  E-value=0.011  Score=50.13  Aligned_cols=21  Identities=14%  Similarity=0.238  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        11 ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999886

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.90  E-value=0.016  Score=49.04  Aligned_cols=39  Identities=13%  Similarity=0.130  Sum_probs=26.2

Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      +++++++||.=- +++.    +.+.|+.+.+.+..||+..++.+
T Consensus        76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~  114 (184)
T 2orw_A           76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLT  114 (184)
T ss_dssp             TEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBC
T ss_pred             CCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccc
Confidence            578999999743 6544    34445545445788888888544

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.89  E-value=0.013  Score=54.83  Aligned_cols=29  Identities=14%  Similarity=0.177  Sum_probs=22.8

Q ss_pred             CCChHHHHHHHHHHHH---Hh--CCCEEEEeCcC
Q 020520          223 GFSGGERKRNEILQLA---VL--GADLAILDEID  251 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL---~~--~p~lLlLDEPt  251 (325)
                      .+|+||+||.+|+++|   +.  +++++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            4899999999999999   76  89999999997

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.87  E-value=0.015  Score=50.21  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++.|+||.||||+|..+.|+-
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999986

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.80  E-value=0.15  Score=57.71  Aligned_cols=36  Identities=25%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             ccceeeeE--EEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           92 QEILKGVN--LLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        92 ~~iL~~vs--l~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.|+++.  .-+++|+.+.|.|+.|+|||||...+.-
T Consensus      1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A         1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp             CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45677776  5799999999999999999999988763

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.73  E-value=0.017  Score=49.80  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      |.+++|=|.-||||||+++.|.-.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~   25 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHR   25 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHH
Confidence            568999999999999999999874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.69  E-value=0.015  Score=55.44  Aligned_cols=22  Identities=45%  Similarity=0.551  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+++|+||+|||||||.+.|+-
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            4789999999999999999886

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.69  E-value=0.016  Score=48.70  Aligned_cols=42  Identities=17%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      ++.+|++||. ..++......+.+.+.+.. .+..+|++|+...
T Consensus       102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~  143 (226)
T 2chg_A          102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVS  143 (226)
T ss_dssp             SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred             CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChh
Confidence            6789999995 5578888888888887643 3456777777653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.55  E-value=0.0046  Score=52.14  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.+.+-
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999884

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=94.54  E-value=0.013  Score=50.09  Aligned_cols=40  Identities=5%  Similarity=-0.114  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhCCCEEEEeCcCc-----CCCHHHHHHHHHHHHhcc
Q 020520          231 RNEILQLAVLGADLAILDEIDS-----GLDVDALRDVAKAVNGLL  270 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPts-----gLD~~~~~~i~~~L~~l~  270 (325)
                      .-.|++.+..+|.+.+.++|+.     .+|+...+.+...+++.+
T Consensus       166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
T 3gj0_A          166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ  210 (221)
T ss_dssp             HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence            4477888899999988888876     788888888888777643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.51  E-value=0.016  Score=55.67  Aligned_cols=22  Identities=41%  Similarity=0.613  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.|+|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999993

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.51  E-value=0.014  Score=53.93  Aligned_cols=26  Identities=15%  Similarity=0.446  Sum_probs=22.7

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..+..+.|.||.|+|||||++.++..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            34667999999999999999999873

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=94.50  E-value=0.019  Score=51.93  Aligned_cols=23  Identities=35%  Similarity=0.319  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++++|.+|+|||||++.|.|-
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~  143 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKK  143 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             ceEEEEecCCCchHHHHHHHhcC
Confidence            46899999999999999999995

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=94.49  E-value=0.015  Score=54.15  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.|.|.
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~   54 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGR   54 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTS
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999995

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.48  E-value=0.021  Score=51.55  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+..+.|.||.|+|||||++.++..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3556899999999999999988874

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=94.47  E-value=0.019  Score=54.72  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..++|||||++.|+|-
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~   23 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLV   23 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4799999999999999999984

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.43  E-value=0.008  Score=53.29  Aligned_cols=25  Identities=32%  Similarity=0.656  Sum_probs=21.1

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ....|  +.|.||+|+|||||++.|+.
T Consensus        42 ~~~~~--vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           42 KIPKG--VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCSC--CCCBCSSCSSHHHHHHHHHH
T ss_pred             CCCce--EEEECCCCCcHHHHHHHHHH
Confidence            33445  77999999999999999987

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.45  E-value=0.007  Score=51.15  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus        32 ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            589999999999999988876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.35  E-value=0.019  Score=53.58  Aligned_cols=24  Identities=38%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .-+++|+|+.|+|||||++.|++.
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998863

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=94.26  E-value=0.021  Score=52.14  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++|+|+.|+|||||++.+.+-
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998763

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.24  E-value=0.025  Score=49.74  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -.+||+|+.||||||+.+.|+-
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            3589999999999999999865

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=94.23  E-value=0.02  Score=53.95  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++..++++|.+|+|||||++.|.|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4667999999999999999999983

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.18  E-value=0.024  Score=50.45  Aligned_cols=24  Identities=21%  Similarity=0.178  Sum_probs=21.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ....+.|.||.|+|||||++.++.
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            344688999999999999999987

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.15  E-value=0.03  Score=51.29  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.-+.|.||.|+|||+|+++|+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999873

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.13  E-value=0.015  Score=56.07  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+++|+|++|+||||++..|++.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999985

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=94.10  E-value=0.031  Score=52.07  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=25.4

Q ss_pred             eeEEEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520           97 GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus        97 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+.++++---.++|+|..+||||||++.|++-
T Consensus       150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            44555554446899999999999999999873

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=94.10  E-value=0.023  Score=56.36  Aligned_cols=23  Identities=17%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++|+|..|+|||||++.|.|-
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~   88 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQ   88 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999995

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.08  E-value=0.016  Score=46.52  Aligned_cols=40  Identities=3%  Similarity=0.016  Sum_probs=28.7

Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITH  281 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtH  281 (325)
                      +..+|++||.- .|+...+..+++.+.+....+..+|.+|+
T Consensus        75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn  114 (143)
T 3co5_A           75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS  114 (143)
T ss_dssp             TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            34678999964 67888888888888775433456666665

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=93.99  E-value=0.021  Score=53.73  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++..++++|.+|+|||||++.|.|-
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            5678999999999999999999984

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.99  E-value=0.031  Score=51.75  Aligned_cols=27  Identities=26%  Similarity=0.291  Sum_probs=24.3

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -+.+|.++.|.||.|+|||||...++.
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            578888999999999999999998874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.99  E-value=0.027  Score=50.55  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +..+.|.||.|+|||||++.++..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345789999999999999999874

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=93.92  E-value=0.039  Score=52.13  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCC---------CCCCccEEEECCEe
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPD---------YEVTEGSVVFKGEN  144 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~---------~~p~~G~I~~~g~~  144 (325)
                      .+||+|..-+|||||++.|+|-..         ..|..|.+.+.|..
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~  120 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK  120 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence            589999999999999999999410         12455788887754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=93.92  E-value=0.028  Score=52.39  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +..+.|.||+|+||||+.+.|+..
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            345789999999999999999985

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=93.92  E-value=0.029  Score=56.49  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=21.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +|.++.|+|.+||||||+.+.|+-
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~   74 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEE   74 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999999999875

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=93.86  E-value=0.032  Score=51.59  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +|..+.|.||.|+|||||++.++..
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4668999999999999999999974

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.85  E-value=0.028  Score=56.05  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .|-++.|.|.+||||||+.+.|.-.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~  419 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVT  419 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHH
Confidence            4668999999999999999999863

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.83  E-value=0.033  Score=51.68  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +..+.|.||.|+|||||++.++..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            557999999999999999999873

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=93.82  E-value=0.036  Score=50.94  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +..-+.|.||.|+|||||++.++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            3456889999999999999999974

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=93.80  E-value=0.033  Score=52.83  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++|..|+|||||++.|+|.
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999999994

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.76  E-value=0.026  Score=55.45  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=23.5

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.|-++.|+|.+||||||+.+.|+..
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~  418 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLST  418 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHH
Confidence            56778999999999999999999884

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=93.76  E-value=0.029  Score=56.15  Aligned_cols=23  Identities=43%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+++|+|+.|+|||||++.|.|-
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~   61 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGK   61 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHhHcCC
Confidence            56899999999999999999995

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=93.75  E-value=0.018  Score=55.60  Aligned_cols=29  Identities=28%  Similarity=0.524  Sum_probs=23.6

Q ss_pred             EEEeCCCE--EEEEcCCCccHHHHHHHHhCC
Q 020520          100 LLVNEGEV--HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       100 l~i~~Ge~--~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.+..|.+  +.|.||+|+|||||+++|+..
T Consensus        43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             HHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence            33444554  889999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-28
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-26
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-26
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	4e-26
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-25
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	2e-25
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-24
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-24
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	5e-24
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	8e-24
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-23
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-23
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-22
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	5e-22
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	6e-22
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	6e-21
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	7e-20
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	3e-19
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	5e-18
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-15
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	4e-09
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-06
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	5e-05
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.004
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	2e-04
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.002

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  108 bits (271), Expect = 2e-28
 Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 13/239 (5%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
           +L+   +     E K   L GV++ VN+G+V  I+G NGSGKSTL  V+ G    +  EG
Sbjct: 4   ILRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEG 59

Query: 137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
            V F+ +++   EP E    G+  +FQ+P  +  +  ++ L +                 
Sbjct: 60  RVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK 119

Query: 197 ------EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEI 250
                 E     +  LE L +     +R   E  SGG+ K  EI +  +    + ++DE 
Sbjct: 120 WIPKEEEMVEKAFKILEFLKLS-HLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDEP 177

Query: 251 DSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
            +G+      D+   V  L     + L+I H   ++       +++M +G+II  G   
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYI-DHLYVMFNGQIIAEGRGE 235

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  103 bits (258), Expect = 1e-26
 Identities = 52/219 (23%), Positives = 104/219 (47%), Gaps = 16/219 (7%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
               +  +NL + +GE   ++G +G GK+T  +++ G    E TEG + F   ++  + P
Sbjct: 18  NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPP 75

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           ++R+++   M FQS    P +   +  ++A+  + +K  + EI     +A      E L 
Sbjct: 76  KDRNIS---MVFQSYAVWPHMTVYE--NIAFPLKIKKFPKDEIDKRVRWA-----AELLQ 125

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +  + LNR   +  SGG+R+R  + +  V+  D+ ++DE  S LD      +   +  L 
Sbjct: 126 I-EELLNRYPAQ-LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183

Query: 271 -TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
              K + + +TH +     +    I +M  G++++ G  
Sbjct: 184 QKLKVTTIYVTHDQVEAMTMGDR-IAVMNRGQLLQIGSP 221

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  101 bits (254), Expect = 4e-26
 Identities = 49/236 (20%), Positives = 103/236 (43%), Gaps = 14/236 (5%)

Query: 74  SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEV 133
           S  +L+V  L           +KG++L V  G++  ++G NG+GK+T    + G      
Sbjct: 3   SDIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRA 58

Query: 134 TEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEI 193
            +G ++F G+++        +  G+ +  +     P +   + L M    R+ K G    
Sbjct: 59  QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118

Query: 194 GPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSG 253
             +E+   L+P+L+      + L +      SGGE++   I +  +    L ++DE   G
Sbjct: 119 --LEWIFSLFPRLK------ERLKQLGGT-LSGGEQQMLAIGRALMSRPKLLMMDEPSLG 169

Query: 254 LDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
           L    + +V + +  +     ++L++         +   + +++E G+I+  G AS
Sbjct: 170 LAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVA-HYGYVLETGQIVLEGKAS 224

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (254), Expect = 4e-26
 Identities = 50/238 (21%), Positives = 105/238 (44%), Gaps = 17/238 (7%)

Query: 77  LLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
           +++++ +T V  +  + I  L  V+L V  G+++ ++G +G+GKSTL + +        T
Sbjct: 1   MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPT 58

Query: 135 EGSVVFKGENLLEMEPEERSLA--GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPE 192
           EGSV+  G+ L  +   E + A   + M FQ    +         ++A         + E
Sbjct: 59  EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG--NVALPLELDNTPKDE 116

Query: 193 IGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDS 252
           +        +   L  + +  D  +   +   SGG+++R  I +       + + DE  S
Sbjct: 117 V-----KRRVTELLSLVGL-GDKHDSYPSN-LSGGQKQRVAIARALASNPKVLLCDEATS 169

Query: 253 GLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
            LD    R + + +  +      ++L+ITH   +++ I    + ++ +G +I+    S
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQDTVS 226

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  100 bits (250), Expect = 1e-25
 Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 15/236 (6%)

Query: 77  LLQVTGLTAVIAESKQEI--LKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVT 134
           ++++  +T      ++ I  LK VNL + EGE  +IMG +GSGKST+  ++      + T
Sbjct: 1   MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--DKPT 58

Query: 135 EGSVVFKGENLLEMEPEERSLA---GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQP 191
           EG V        +++ +E +      +   FQ    IP +  ++  ++      +  G  
Sbjct: 59  EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE--NVELPLIFKYRGAM 116

Query: 192 EIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEID 251
                   A    K+  L  +  F N   N+  SGG+++R  I +       + + D+  
Sbjct: 117 SGEERRKRALECLKMAELEER--FANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPT 173

Query: 252 SGLDVDALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTG 306
             LD      + + +  L      +++++TH   +  F     I  ++DG + +  
Sbjct: 174 GALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF--GERIIYLKDGEVEREE 227

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  100 bits (250), Expect = 2e-25
 Identities = 64/259 (24%), Positives = 120/259 (46%), Gaps = 26/259 (10%)

Query: 71  DEKSQPLLQVTG------LTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKV 124
           DE  + + + TG      +T      +   L+ +NL +  G+  A++G++GSGKST++ +
Sbjct: 1   DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60

Query: 125 LVGHPDYEVTEGSVVFKGENLLEMEPEE-RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNA 183
           +     Y++ EG ++  G +L E      R+   L             NNI +      A
Sbjct: 61  ITRF--YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY------A 112

Query: 184 RRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEG---FSGGERKRNEILQLAVL 240
           R  +  + +I      AY    + ++    + L+  + E     SGG+R+R  I +  + 
Sbjct: 113 RTEEYSREQIEEAARMAYAMDFINKMD---NGLDTIIGENGVLLSGGQRQRIAIARALLR 169

Query: 241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDG 300
            + + ILDE  S LD ++ R +  A++ L   + + L+I H  RL    +   I ++EDG
Sbjct: 170 DSPILILDEATSALDTESERAIQAALDELQKNR-TSLVIAH--RLSTIEQADEIVVVEDG 226

Query: 301 RIIKTGDASIATVLEEGGY 319
            I++ G  + + +L + G 
Sbjct: 227 IIVERG--THSELLAQHGV 243

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.5 bits (245), Expect = 2e-24
 Identities = 53/264 (20%), Positives = 94/264 (35%), Gaps = 31/264 (11%)

Query: 47  LSLNRVTAALSAVDSPLKSSSDGQDEKSQPLLQVTGLTAV--IAESKQEILKGVNLLVNE 104
           + +  VTA        L      Q    +         +   +      +LK +NL + +
Sbjct: 3   IIMENVTAFWEEGFGELLEKVQ-QSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEK 61

Query: 105 GEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQS 164
           GE+ AI G  GSGK++L  +++G  + E +EG +   G               +    Q 
Sbjct: 62  GEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGR--------------VSFCSQF 105

Query: 165 PVEIPGV--NNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNE 222
              +PG    NI F       R +         +     L   + + + + + +      
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKS--------VVKACQLQQDITKFAEQDNTVLGEGGV 157

Query: 223 GFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHY 282
             SGG+R R  + +     ADL +LD     LDV     V ++    L    + +++T  
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS- 216

Query: 283 RRLLEFIKPTFIHIMEDGRIIKTG 306
            ++    K   I I+  G     G
Sbjct: 217 -KMEHLRKADKILILHQGSSYFYG 239

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (242), Expect = 2e-24
 Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 18/235 (7%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
                +L+G+   +  GEV A++G NGSGKST++ +L     Y+ T G ++  G+ L + 
Sbjct: 24  RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL--YQPTGGQLLLDGKPLPQY 81

Query: 149 EPEE-RSLAGLFMSFQSPVEIPG--VNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPK 205
           E              Q P         NI +         +K    EI      +  +  
Sbjct: 82  EHRYLHRQVA--AVGQEPQVFGRSLQENIAY------GLTQKPTMEEITAAAVKSGAHSF 133

Query: 206 LERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA 265
           +  L    D          SGG+R+   + +  +    + ILD+  S LD ++   V + 
Sbjct: 134 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 193

Query: 266 VNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
           +       + S+L+IT    L    +   I  +E G I + G  +   ++E+ G 
Sbjct: 194 LYESPERYSRSVLLITQ--HLSLVEQADHILFLEGGAIREGG--THQQLMEKKGC 244

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 95.8 bits (238), Expect = 5e-24
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 26/227 (11%)

Query: 90  SKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEME 149
           ++   L  ++  V  GE+  ++G NG+GKSTL   + G       +GS+ F G+ L    
Sbjct: 10  AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG---MTSGKGSIQFAGQPLEAWS 66

Query: 150 PEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL 209
             + +L   ++  Q            +L +  + + R     ++               L
Sbjct: 67  ATKLALHRAYL-SQQQTPPFATPVWHYLTLHQHDKTRTELLNDV------------AGAL 113

Query: 210 SMKTDFLNRNVNEGFSGGERKRNEILQLAV-------LGADLAILDEIDSGLDVDALRDV 262
           ++  D L R+ N+  SGGE +R  +  + +           L +LDE  + LDV     +
Sbjct: 114 AL-DDKLGRSTNQ-LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 171

Query: 263 AKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
            K ++ L     +++M +H              +++ G+++ +G   
Sbjct: 172 DKILSALCQQGLAIVMSSHDLNHTLRHAHR-AWLLKGGKMLASGRRE 217

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 95.4 bits (237), Expect = 8e-24
 Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 11/219 (5%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
                IL  +NL + +GEV  I+G++GSGKSTL+K++     Y    G V+  G +L   
Sbjct: 13  PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLIDGHDLALA 70

Query: 149 EPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLER 208
           +P       + +  Q  V +   + ID + +A       +   ++      A  +  +  
Sbjct: 71  DPNWLR-RQVGVVLQDNVLLNR-SIIDNISLA----NPGMSVEKVIYAAKLAGAHDFISE 124

Query: 209 LSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNG 268
           L    + +      G SGG+R+R  I +  V    + I DE  S LD ++   + + ++ 
Sbjct: 125 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 184

Query: 269 LLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD 307
           +   + ++++I H  RL        I +ME G+I++ G 
Sbjct: 185 ICKGR-TVIIIAH--RLSTVKNADRIIVMEKGKIVEQGK 220

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 94.6 bits (235), Expect = 2e-23
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 20/235 (8%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           +  ++IL+ ++       + A  G +G GKST+  +L     Y+ T G +   G+ +  +
Sbjct: 12  DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITIDGQPIDNI 69

Query: 149 EPEE-RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207
             E  RS  G          +   + I    +  N      G      +     L     
Sbjct: 70  SLENWRSQIGF---------VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120

Query: 208 RLSMKTDFLNRNVNEG---FSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAK 264
            +    D LN  V E     SGG+R+R  I +  +    + +LDE  + LD ++   V K
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180

Query: 265 AVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
           A++ L+  + + L+I H  RL   +    I+ +E G+I  +G      ++     
Sbjct: 181 ALDSLMKGR-TTLVIAH--RLSTIVDADKIYFIEKGQITGSG--KHNELVATHPL 230

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 93.8 bits (233), Expect = 5e-23
 Identities = 46/230 (20%), Positives = 98/230 (42%), Gaps = 22/230 (9%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
             E+LKGV+L    G+V +I+G +GSGKST  + +      + +EG+++  G+N+  +  
Sbjct: 14  GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIVNGQNINLVRD 71

Query: 151 EERSLAGLF------------MSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF 198
           ++  L                M FQ       +  ++ + M    +   L + +      
Sbjct: 72  KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-MEAPIQVLGLSKHDARERAL 130

Query: 199 YAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDA 258
                  L ++ +      +      SGG+++R  I +   +  D+ + DE  S LD + 
Sbjct: 131 KY-----LAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPEL 184

Query: 259 LRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
           + +V + +  L     +++++TH       +  + +  +  G+I + GD 
Sbjct: 185 VGEVLRIMQQLAEEGKTMVVVTHEMGFARHV-SSHVIFLHQGKIEEEGDP 233

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 92.3 bits (229), Expect = 1e-22
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 16/222 (7%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           +   ++ ++L V +GE   ++G +G GK+T  +++ G    E + G +    + + + E 
Sbjct: 15  EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEK 72

Query: 151 EERSLA---GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207
                     + M FQS    P +   D +      R+    + +    E         E
Sbjct: 73  GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV-------AE 125

Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN 267
            L + T+ LNR   E  SGG+R+R  + +  V    + ++DE  S LD      +   + 
Sbjct: 126 LLGL-TELLNRKPRE-LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELK 183

Query: 268 GLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
            L      + + +TH +     +    I +M  G + + G  
Sbjct: 184 KLQRQLGVTTIYVTHDQVEAMTMG-DRIAVMNRGVLQQVGSP 224

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 90.4 bits (224), Expect = 5e-22
 Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 14/219 (6%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           K+EILKG++  + EGE+  ++G NG+GK+T  +++      + + G V   G+N++E   
Sbjct: 14  KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--IKPSSGIVTVFGKNVVEEPH 71

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
           E R L       +       +  I+  ++ + A        EI        +    E   
Sbjct: 72  EVRKLIS--YLPEEAGAYRNMQGIE--YLRFVAGFYASSSSEI-----EEMVERATEIAG 122

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +  + +   V+  +S G  ++  I +  ++   LAILDE  SGLDV   R+V K +    
Sbjct: 123 L-GEKIKDRVST-YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180

Query: 271 TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
               ++L+ +H    +EF+    I ++ +G I++TG   
Sbjct: 181 QEGLTILVSSHNMLEVEFLC-DRIALIHNGTIVETGTVE 218

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 90.6 bits (225), Expect = 6e-22
 Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 15/232 (6%)

Query: 89  ESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEM 148
           +++  ILK +NL + +GE  A +G +G GKSTL  ++     Y+VT G ++  G N+ + 
Sbjct: 28  DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--YDVTSGQILIDGHNIKDF 85

Query: 149 EPEE-RSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLE 207
                R+  GL              NI          R      E+      A  +  + 
Sbjct: 86  LTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDFIM 138

Query: 208 RLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVN 267
            L    D          SGG+++R  I ++ +    + ILDE  S LD+++   + +A++
Sbjct: 139 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD 198

Query: 268 GLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIATVLEEGGY 319
            L   + + L++ H  RL        I ++E+G I++TG  +   ++ + G 
Sbjct: 199 VLSKDR-TTLIVAH--RLSTITHADKIVVIENGHIVETG--THRELIAKQGA 245

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 87.7 bits (217), Expect = 6e-21
 Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 16/219 (7%)

Query: 91  KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP 150
           +  + K +NL ++EGE    +G +G GKSTL +++ G     +T G +    + + +  P
Sbjct: 12  EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPP 69

Query: 151 EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLS 210
            ER +    M FQS    P ++  + +         K              +    E L 
Sbjct: 70  AERGVG---MVFQSYALYPHLSVAENMSFGLKLAGAK-------KEVINQRVNQVAEVLQ 119

Query: 211 MKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLL 270
           +    L+R      SGG+R+R  I +  V    + +LDE  S LD      +   ++ L 
Sbjct: 120 L-AHLLDRKPKA-LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177

Query: 271 TP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
                +++ +TH +     +    I +++ GR+ + G  
Sbjct: 178 KRLGRTMIYVTHDQVEAMTLADK-IVVLDAGRVAQVGKP 215

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 84.8 bits (209), Expect = 7e-20
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 15/235 (6%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
            + V  ++ V  + K   L  VN+ +  GE   I+G +G+GK+T  +++ G      + G
Sbjct: 3   RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--DVPSTG 60

Query: 137 SVVFKGENLLEMEPEERSLA--GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIG 194
            + F    +              + M FQ+    P +   +  ++A+     K+ + EI 
Sbjct: 61  ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFE--NIAFPLTNMKMSKEEI- 117

Query: 195 PIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL 254
                  +    + L +    LN    E  SG +++R  + +  V    L +LDE  S L
Sbjct: 118 ----RKRVEEVAKILDI-HHVLNHFPRE-LSGAQQQRVALARALVKDPSLLLLDEPFSNL 171

Query: 255 DVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
           D          V  + +    +LL+++H    +  I    + ++  G++++ G  
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI-ADRVGVLVKGKLVQVGKP 225

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 82.8 bits (204), Expect = 3e-19
 Identities = 50/233 (21%), Positives = 102/233 (43%), Gaps = 22/233 (9%)

Query: 77  LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEG 136
           ++++  L+      K   L  ++L V  GE   I+G  G+GK+   +++ G   +    G
Sbjct: 1   MIEIESLSRKW---KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--HVPDSG 55

Query: 137 SVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPI 196
            ++  G+++ ++ PE+  +A     +Q+    P +N     ++ +  R +K+  P+    
Sbjct: 56  RILLDGKDVTDLSPEKHDIA---FVYQNYSLFPHMNVKK--NLEFGMRMKKIKDPKR--- 107

Query: 197 EFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 256
                      R       L+RN     SGGE++R  + +  V    + +LDE  S LD 
Sbjct: 108 ------VLDTARDLKIEHLLDRNPLT-LSGGEQQRVALARALVTNPKILLLDEPLSALDP 160

Query: 257 DALRDVAKAVNGLLTPKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA 308
               +  + ++ L      ++L ITH +     +    I ++ DG++I+ G  
Sbjct: 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR-IAVVMDGKLIQVGKP 212

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 33/191 (17%), Positives = 77/191 (40%), Gaps = 21/191 (10%)

Query: 92  QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
           + +L+ + + + +G V    G NG GK+TL K +  +   +  +G +++ G       P 
Sbjct: 14  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--LKPLKGEIIYNG------VPI 65

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
            +    +F   +  +    ++  D+L    +    K+ + EI        +    ++L  
Sbjct: 66  TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGE 125

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
                        S G  +R ++    ++ A++ +LD+    +D D+   V K++  +L 
Sbjct: 126 ------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK 173

Query: 272 PKN-SLLMITH 281
            K   ++    
Sbjct: 174 EKGIVIISSRE 184

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 41/219 (18%), Positives = 81/219 (36%), Gaps = 21/219 (9%)

Query: 95  LKGVNLLVN---EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
           L    L V+     +   ++G  G+GKS   +++ G    +   G V   G ++  + PE
Sbjct: 11  LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGI--VKPDRGEVRLNGADITPLPPE 68

Query: 152 ERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSM 211
            R +       Q     P ++    +        R      +           ++     
Sbjct: 69  RRGIG---FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRV----------REMAEKLG 115

Query: 212 KTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT 271
               L+R      SGGER+R  + +  V+   L +LDE  S +D+     + + +  +  
Sbjct: 116 IAHLLDRKPAR-LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174

Query: 272 PKN-SLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS 309
             +  +L +TH       +    + +M +GRI++ G   
Sbjct: 175 EFDVPILHVTHDLIEAAMLADE-VAVMLNGRIVEKGKLK 212

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 23/208 (11%), Positives = 50/208 (24%), Gaps = 40/208 (19%)

Query: 109 AIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEI 168
            I G+ G GK+TL K +V              +     E +                   
Sbjct: 4   IITGEPGVGKTTLVKKIVER--LGKRAIGFWTEEVRDPETK------------------- 42

Query: 169 PGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGE 228
                          +R           +          +  + +  +N    E      
Sbjct: 43  ---------------KRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE-ELAIP 86

Query: 229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEF 288
                  +       + I+DEI         +        +  P  +++     R +   
Sbjct: 87  ILERAYREAKKDRRKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIRDVHPL 145

Query: 289 IKPTFIHIMEDGRIIKTGDASIATVLEE 316
           +    I  +    +I+    +   +LE+
Sbjct: 146 V--KEIRRLPGAVLIELTPENRDVILED 171

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 224 FSGGERKRNEI-LQLAVLGADLA---ILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMI 279
            SGGE+    + L  A+     +   +LDE+D+ LD+  ++ +A  +     P    ++I
Sbjct: 333 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVI 392

Query: 280 THYRRLLEFIKPTF-IHIMEDGRIIKT 305
           +    + E       ++  +     K 
Sbjct: 393 SLKNTMFEKSDALVGVYRQQQENSSKI 419

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPE 151
           LL    EV   +G  G+GKST  +  +    Y       +   +  +     
Sbjct: 9   LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQA 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.91
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.73
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.43
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.08
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.45
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.37
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.3
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.95
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.81
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.72
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.62
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.59
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.52
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.5
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.5
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.45
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.45
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.42
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.35
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.33
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.32
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.32
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.31
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.27
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.27
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.24
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.24
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.21
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.2
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.16
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.14
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.11
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.11
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.04
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.0
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.94
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.89
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.86
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.84
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.83
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.8
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.8
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.77
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.76
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.73
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.73
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.69
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.69
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.69
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.69
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.68
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.66
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.65
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.64
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.63
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.55
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.55
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.55
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.54
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.53
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.53
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.52
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.51
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.5
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.49
d1okkd2	207	GTPase domain of the signal recognition particle r	96.47
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.44
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.42
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.41
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.39
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.33
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.32
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.3
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.29
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.25
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.21
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.2
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.19
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.19
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.18
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.17
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.11
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.11
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.09
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.07
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.05
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.03
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.99
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.96
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.95
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.94
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.92
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.91
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.88
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.86
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.83
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.82
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.82
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.81
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.8
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.8
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.74
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.73
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.72
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.69
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.68
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.67
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.66
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.66
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.65
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.61
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.58
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.56
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.55
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.54
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.52
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.48
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.47
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.46
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.46
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.44
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.38
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.36
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.36
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.34
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.32
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.29
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.24
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.21
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.16
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.11
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.09
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.08
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.06
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.03
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.03
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.02
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.99
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.98
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.95
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.92
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.9
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.86
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.84
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.83
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.79
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.79
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.68
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.66
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.63
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.61
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.59
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.59
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.55
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.54
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.52
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.51
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.45
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.44
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.43
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.39
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.23
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.19
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.15
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.13
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.13
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.13
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.07
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.65
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.52
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.41
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.38
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.29
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.96
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.77
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.76
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.75
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.59
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.57
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.54
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.39
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.38
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	92.36
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.27
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.18
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.07
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.05
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	91.99
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.72
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.9
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.6
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.16
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.05
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.74
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.54
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.49
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.48
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.13
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	89.11
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	88.83
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.55
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.24
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.99
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.07
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	86.73
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	86.7
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	86.12
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	85.51
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.3
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.06
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	84.97
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.92
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	84.58
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	84.56
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.53
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	84.24
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.05
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	83.54
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	83.26
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	83.09
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	83.0
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	82.53
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	82.3
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	81.3

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=7e-61  Score=426.48  Aligned_cols=223  Identities=21%  Similarity=0.280  Sum_probs=194.2

Q ss_pred             cEEEEEEEEEECCCcc--cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVIAESKQ--EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~--~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ||+++||+|+|+.+.+  .+|+||||+|++||++||+||||||||||+++|+|+  .+|++|+|.++|+++...+..++.
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl--~~p~sG~I~~~g~~i~~~~~~~~~   78 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--DKPTEGEVYIDNIKTNDLDDDELT   78 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCC--CCCCcceeEECCEEcCcCChhhcc
Confidence            6899999999975332  479999999999999999999999999999999998  689999999999999998876533


Q ss_pred             ---hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHH
Q 020520          155 ---LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKR  231 (325)
Q Consensus       155 ---~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQR  231 (325)
                         +..++|+||++.+++.+|+.+++.++....    ........+..+++.+.++.+++...+.++.+.+ ||||||||
T Consensus        79 ~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~-LSGGqkQR  153 (230)
T d1l2ta_          79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFK----YRGAMSGEERRKRALECLKMAELEERFANHKPNQ-LSGGQQQR  153 (230)
T ss_dssp             HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC----CSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG-SCHHHHHH
T ss_pred             hhhcceEEEEecchhhCcCccHHHHHhHHHHHh----ccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhh-CCHHHHHH
Confidence               345999999999999999999987764321    1223445666778889999999975567777765 99999999


Q ss_pred             HHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          232 NEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       232 v~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |+|||||+.+|++|||||||++||+.+++.++++|+++.++ |+|||+||||++++ .+ ||||++|++|+|+++|++
T Consensus       154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~-~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RF-GERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TT-SSEEEEEETTEEEEEEEC
T ss_pred             HHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-Hh-CCEEEEEECCEEEEeccC
Confidence            99999999999999999999999999999999999999754 89999999999987 56 799999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=6.1e-61  Score=428.53  Aligned_cols=218  Identities=22%  Similarity=0.347  Sum_probs=189.5

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ..|+++||+++|++  +.+|+||||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...++..   
T Consensus         5 ~~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl--~~p~sG~I~i~g~~i~~~~~~~---   77 (239)
T d1v43a3           5 VEVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKD---   77 (239)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGGG---
T ss_pred             CeEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEEcceecccCCccc---
Confidence            35899999999964  7899999999999999999999999999999999998  7899999999999998877543   


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                      ..++|+||++.+|+.+|+.+++.+....       ......+..+++.++++.+++. ++.++++.+ |||||||||+||
T Consensus        78 r~ig~v~Q~~~l~~~ltv~enl~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSGGq~QRvaiA  148 (239)
T d1v43a3          78 RNISMVFQSYAVWPHMTVYENIAFPLKI-------KKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQ-LSGGQRQRVAVA  148 (239)
T ss_dssp             GTEEEEEC------CCCHHHHHHTTCC---------CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTT-CCSSCHHHHHHH
T ss_pred             ceEEEEeechhhcccchHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCCh-hhhcCChhh-CCHHHHHHHHHH
Confidence            3589999999999999999998654322       1234566778899999999996 688888875 999999999999


Q ss_pred             HHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          236 QLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       236 raL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||+.+|+||||||||+|||+.++.+++++|+++.++ |+|||+||||++++..+ ||||++|++|+|++.|+++.
T Consensus       149 raL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~-~dri~vm~~G~iv~~G~~~e  223 (239)
T d1v43a3         149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM-GDRIAVMNRGQLLQIGSPTE  223 (239)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             hhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999765 99999999999999998 69999999999999998864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-60  Score=426.75  Aligned_cols=222  Identities=21%  Similarity=0.303  Sum_probs=196.7

Q ss_pred             cEEEEEEEEEECCCcc--cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           77 LLQVTGLTAVIAESKQ--EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~--~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ||+++||+++|+.+..  .||+||||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...+...++
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl--~~p~sG~I~~~g~~i~~~~~~~~~   78 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTEGSVLVDGQELTTLSESELT   78 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTS--SCCSEEEEEETTEEECTTCHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCC--ccccCCceEEcCeEeeeCChhhhh
Confidence            6899999999975432  589999999999999999999999999999999998  689999999999999988765532


Q ss_pred             --hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          155 --LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       155 --~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                        +..++++||++.+++.+|+.+++..+...    .+   ....+..+++.++++.+++. +..++++.+ |||||||||
T Consensus        79 ~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~----~~---~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~-LSGG~~QRv  149 (240)
T d3dhwc1          79 KARRQIGMIFQHFNLLSSRTVFGNVALPLEL----DN---TPKDEVKRRVTELLSLVGLG-DKHDSYPSN-LSGGQKQRV  149 (240)
T ss_dssp             HHHHHEEECCSSCCCCTTSBHHHHHHHHHHT----TT---CCTTHHHHHHHHHHHHHSTT-TTTSSCBSC-CCHHHHHHH
T ss_pred             hhhccccccccccccCCCccHHHHHHHHHHH----cC---CCHHHHHHHHHHHHHHcCCc-hhhhCChhh-CCHHHHHHH
Confidence              23599999999999999999998776432    12   22345667889999999996 678888875 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +|||||+.+|++|||||||+|||+.++..++++|+++.++ |+|||+||||++++..+ ||||++|++|+|++.|+++.
T Consensus       150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~-~dri~vl~~G~iv~~G~~~e  227 (240)
T d3dhwc1         150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQDTVSE  227 (240)
T ss_dssp             HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHH-CSEEEEEETTEEEEEEETTT
T ss_pred             HHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence            9999999999999999999999999999999999999766 99999999999999988 69999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.3e-61  Score=429.32  Aligned_cols=222  Identities=20%  Similarity=0.275  Sum_probs=195.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH--Hh
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE--RS  154 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~--~~  154 (325)
                      .|+++||+++|+++...+|+||||+|++||+++|+||||||||||+++|+|+  .+|++|+|.++|+++...+...  ..
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl--~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--DVPSTGELYFDDRLVASNGKLIVPPE   80 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--SCCSEEEEEETTEEEEETTEESSCGG
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcC--cCCCCceEEECCEEeecCchhhcchh
Confidence            5899999999975556799999999999999999999999999999999998  7899999999999986544221  12


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEI  234 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~i  234 (325)
                      +..++|+||++.+|+.+|+.+|+.++...       ......+..+++.++++.+++. +..++++.+ |||||||||+|
T Consensus        81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~-------~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~-LSGGqkQRvai  151 (242)
T d1oxxk2          81 DRKIGMVFQTWALYPNLTAFENIAFPLTN-------MKMSKEEIRKRVEEVAKILDIH-HVLNHFPRE-LSGAQQQRVAL  151 (242)
T ss_dssp             GSCEEEEETTSCCCTTSCHHHHHHGGGTT-------SSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGG-SCHHHHHHHHH
T ss_pred             hccceEEeccccccccccHHHHhhhhhHh-------hcCCHHHHHHHHHHHHhhcChH-hhhhCChhh-CCHHHHhHHHH
Confidence            34599999999999999999998765421       1234566778899999999996 678888875 99999999999


Q ss_pred             HHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          235 LQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       235 AraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||||+++|++|||||||+|||+.++.+++++|+++.++ |.|||+||||++++..+ ||||++|++|+|++.|+++.
T Consensus       152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~-~dri~vm~~G~iv~~g~~~e  227 (242)
T d1oxxk2         152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI-ADRVGVLVKGKLVQVGKPED  227 (242)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999755 99999999999999988 69999999999999998863

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.9e-60  Score=425.88  Aligned_cols=220  Identities=21%  Similarity=0.280  Sum_probs=195.1

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHH---H
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEE---R  153 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~---~  153 (325)
                      .|+++||+|+|++  +.+|+||||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+...   .
T Consensus         3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl--~~p~sG~I~~~g~~i~~~~~~~~~~~   78 (240)
T d1g2912           3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEKGIFVPP   78 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred             cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcC--CCCCCCEEEECCEEecccchhhhccc
Confidence            5899999999964  6799999999999999999999999999999999998  7899999999999986544322   1


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNE  233 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~  233 (325)
                      ++..++++||++.+++.+|+.+++.++....    +   ....+..+++.++++.+++. ++.++++.+ |||||||||+
T Consensus        79 ~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~----~---~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~-LSGGqkQRv~  149 (240)
T d1g2912          79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR----K---VPRQEIDQRVREVAELLGLT-ELLNRKPRE-LSGGQRQRVA  149 (240)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHT----T---CCHHHHHHHHHHHHHHHTCG-GGTTCCGGG-SCHHHHHHHH
T ss_pred             ccccceecccchhhcchhhhhHhhhhhHHHc----C---CCHHHHHHHHHHHHHHcCCh-hHhcCChhh-CCHHHHHHHH
Confidence            2346999999999999999999987765432    1   23566677899999999996 678888875 9999999999


Q ss_pred             HHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          234 ILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       234 iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |||||+++|++|||||||+|||+.++..+++.|+++.++ |.|||+||||++++..+ ||||++|++|+|++.|+++.
T Consensus       150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~-~drv~vm~~G~iv~~G~~~e  226 (240)
T d1g2912         150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTM-GDRIAVMNRGVLQQVGSPDE  226 (240)
T ss_dssp             HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999999999765 99999999999999998 69999999999999998763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-61  Score=426.36  Aligned_cols=216  Identities=24%  Similarity=0.332  Sum_probs=160.0

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++||+++|++  +.+|+||||+|++||++||+||||||||||+|+|+|+  .+|++|+|.++|+++...++..   ..
T Consensus         1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl--~~p~sG~I~i~g~~i~~~~~~~---r~   73 (232)
T d2awna2           1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE---RG   73 (232)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEESSSCCTTSCGGG---TC
T ss_pred             CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--CCCCCCEEEECCEECCCCchhh---ce
Confidence            689999999964  7899999999999999999999999999999999998  7899999999999998776432   35


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQL  237 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAra  237 (325)
                      ++|+||++.+++.+|+.+++.++.....       ...++..+++.++++.+++. ++.++++.+ |||||||||+||||
T Consensus        74 ig~v~Q~~~l~~~~tv~eni~~~~~~~~-------~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~-LSGGqkQRvaiAra  144 (232)
T d2awna2          74 VGMVFQSYALYPHLSVAENMSFGLKLAG-------AKKEVINQRVNQVAEVLQLA-HLLDRKPKA-LSGGQRQRVAIGRT  144 (232)
T ss_dssp             EEEECSSCCC----------------------------CHHHHHHHHHHHHC-----------------------CHHHH
T ss_pred             eeeeccccccccchhHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHhCCCh-hhhhCChhh-CCHHHHHHHHHHHH
Confidence            8999999999999999999877643221       12345567789999999996 678888875 99999999999999


Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      |+.+|++|||||||+|||+.+++++++.|+++.+ .|+|||+||||++++..+ ||||++|++|+|++.|+++.
T Consensus       145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~-~dri~vm~~G~iv~~G~~~e  217 (232)
T d2awna2         145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL-ADKIVVLDAGRVAQVGKPLE  217 (232)
T ss_dssp             HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEeCHHH
Confidence            9999999999999999999999999999999864 599999999999999998 69999999999999998863

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=2.8e-60  Score=421.70  Aligned_cols=213  Identities=22%  Similarity=0.371  Sum_probs=189.9

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++||+|+|++   .+|+||||+|++||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++...+...   .
T Consensus         1 mi~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl--~~p~sG~I~~~G~~i~~~~~~~---r   72 (229)
T d3d31a2           1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--HVPDSGRILLDGKDVTDLSPEK---H   72 (229)
T ss_dssp             CEEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--SCCSEEEEEETTEECTTSCHHH---H
T ss_pred             CEEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC--cCCCCCEEEEccEeccccchhH---h
Confidence            6899999999963   589999999999999999999999999999999998  6899999999999998877653   2


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+|+.+|+.+|+.++....    +..   .   .+++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~----~~~---~---~~~~~~~l~~~~l~-~~~~~~~~~-LSGG~~QRvaiAr  140 (229)
T d3d31a2          73 DIAFVYQNYSLFPHMNVKKNLEFGMRMK----KIK---D---PKRVLDTARDLKIE-HLLDRNPLT-LSGGEQQRVALAR  140 (229)
T ss_dssp             TCEEECTTCCCCTTSCHHHHHHHHHHHH----CCC---C---HHHHHHHHHHTTCT-TTTTSCGGG-SCHHHHHHHHHHH
T ss_pred             cceeeccccccCccccHHHHHHHHHhhc----ccc---H---HHHHHHHHHHhcch-hhHhCChhh-CCHHHhcchhhhh
Confidence            4889999999999999999998765432    111   1   23577789999996 678888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccC-CCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLT-PKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+++|++|||||||+|||+.++.+++++|+++.+ .|.|||+||||++++..+ ||||++|++|+|++.|+++.
T Consensus       141 aL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~-~drv~vm~~G~iv~~g~~~e  214 (229)
T d3d31a2         141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM-ADRIAVVMDGKLIQVGKPEE  214 (229)
T ss_dssp             HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-CSEEEEESSSCEEEEECHHH
T ss_pred             hhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999965 489999999999999998 69999999999999998864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.5e-59  Score=419.44  Aligned_cols=222  Identities=20%  Similarity=0.290  Sum_probs=192.5

Q ss_pred             CCCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHH
Q 020520           74 SQPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEER  153 (325)
Q Consensus        74 ~~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~  153 (325)
                      .+.+|+++||+++|++  ..+|+||||+|++||++||+||||||||||+|+|+|+  ++|++|+|.++|+++...+...+
T Consensus         3 sd~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl--~~p~~G~I~~~G~~i~~~~~~~~   78 (240)
T d1ji0a_           3 SDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIFNGQDITNKPAHVI   78 (240)
T ss_dssp             CSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHH
T ss_pred             cceEEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEecccccccccHHHH
Confidence            3568999999999964  6899999999999999999999999999999999998  78999999999999999888777


Q ss_pred             hhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhc-CCccccccccCCCCCChHHHHHH
Q 020520          154 SLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERL-SMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       154 ~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      .+.+++++||++.+|+.+|+.+++......      ..  ......+.+.+.++.+ ++. +..++.+++ |||||||||
T Consensus        79 ~r~gi~~~~q~~~l~~~ltv~en~~~~~~~------~~--~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-LSGG~~Qrv  148 (240)
T d1ji0a_          79 NRMGIALVPEGRRIFPELTVYENLMMGAYN------RK--DKEGIKRDLEWIFSLFPRLK-ERLKQLGGT-LSGGEQQML  148 (240)
T ss_dssp             HHTTEEEECSSCCCCTTSBHHHHHHGGGTT------CC--CSSHHHHHHHHHHHHCHHHH-TTTTSBSSS-SCHHHHHHH
T ss_pred             HHhcccccCcccccCCcccHHHHHHHHHHh------cC--CHHHHHHHHHHHHHHhhChH-HHHhCchhh-CCHHHHHHH
Confidence            778899999999999999999987543211      11  1122333445555555 443 567777765 999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      +|||||+++|++|||||||+|||+.++.+++++|++++++|+|||++|||++++..+ ||||++|++|+|+++|+++.
T Consensus       149 ~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~-~drv~vl~~G~iv~~g~~~e  225 (240)
T d1ji0a_         149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKV-AHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-CSEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999999999988899999999999999988 69999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=6.7e-59  Score=421.24  Aligned_cols=228  Identities=26%  Similarity=0.367  Sum_probs=198.7

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+|+++||+++|++  .++|+||||+|++||++||+||||||||||+|+|+|+  ++|++|+|.++|+++...++.++.+
T Consensus         3 ~iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl--~~p~~G~I~~~g~~i~~~~~~~~~~   78 (254)
T d1g6ha_           3 EILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELYH   78 (254)
T ss_dssp             EEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             ceEEEEEEEEEECC--eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC--CcCCCcEEEECCEeccchhHHHHHH
Confidence            48999999999964  6899999999999999999999999999999999998  7899999999999999988888777


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHH------hhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNAR------RRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGER  229 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqr  229 (325)
                      .+++++||++.+++.+|+.+|+.++....      ...........++..+++.++++.+++. +..++.+.+ ||||||
T Consensus        79 ~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~~  156 (254)
T d1g6ha_          79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGE-LSGGQM  156 (254)
T ss_dssp             HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGG-SCHHHH
T ss_pred             hcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhh-CCcHHH
Confidence            78999999999999999999987642110      0000111122345556788889999996 567777765 999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+|||||+.+|++|||||||+|||+.++++++++|++++++|+|||+||||++++..+ ||||++|++|+|+++|+++
T Consensus       157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~-~Drv~vm~~G~iv~~g~~~  235 (254)
T d1g6ha_         157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNY-IDHLYVMFNGQIIAEGRGE  235 (254)
T ss_dssp             HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGG-CSEEEEEETTEEEEEEESH
T ss_pred             HHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHh-CCEEEEEeCCEEEEEecHH
Confidence            999999999999999999999999999999999999999988899999999999999988 6999999999999999886


Q ss_pred             H
Q 020520          310 I  310 (325)
Q Consensus       310 ~  310 (325)
                      .
T Consensus       236 e  236 (254)
T d1g6ha_         236 E  236 (254)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.1e-59  Score=421.64  Aligned_cols=222  Identities=22%  Similarity=0.318  Sum_probs=192.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCH------
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEP------  150 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~------  150 (325)
                      .|+++||+|+|++  +.+|+||||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|+++...+.      
T Consensus         2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl--~~p~~G~I~~~G~~i~~~~~~~~~~~   77 (258)
T d1b0ua_           2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIVNGQNINLVRDKDGQLK   77 (258)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCEEECTTSSEE
T ss_pred             eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcC--ccCCCCCEEECCEEeccCCccchhcc
Confidence            5899999999964  6799999999999999999999999999999999998  78999999999999864321      


Q ss_pred             ------HHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCC
Q 020520          151 ------EERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGF  224 (325)
Q Consensus       151 ------~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  224 (325)
                            ....+..++++||++.+++.+++.+++.......   .   .....+..+++.++++.+++.....++.+. +|
T Consensus        78 ~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~---~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~-~L  150 (258)
T d1b0ua_          78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV---L---GLSKHDARERALKYLAKVGIDERAQGKYPV-HL  150 (258)
T ss_dssp             ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---T---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGG-GS
T ss_pred             cccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh---c---CCCHHHHHHHHHHHHHHcCCchhhhccCcc-cc
Confidence                  1122345899999999999999999887643211   1   123456667888999999997555667676 49


Q ss_pred             ChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEE
Q 020520          225 SGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIK  304 (325)
Q Consensus       225 SgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~  304 (325)
                      ||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++|+|||+||||++++..+ ||||++|++|+|++
T Consensus       151 SGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~-adri~vm~~G~iv~  229 (258)
T d1b0ua_         151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV-SSHVIFLHQGKIEE  229 (258)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-CSEEEEEETTEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHh-CCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999988899999999999999988 79999999999999


Q ss_pred             EcCccH
Q 020520          305 TGDASI  310 (325)
Q Consensus       305 ~g~~~~  310 (325)
                      +|+++.
T Consensus       230 ~g~~~e  235 (258)
T d1b0ua_         230 EGDPEQ  235 (258)
T ss_dssp             EECHHH
T ss_pred             EcCHHH
Confidence            998864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.4e-56  Score=401.84  Aligned_cols=219  Identities=25%  Similarity=0.345  Sum_probs=192.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .|+++||+++|++  +++|+|+||+|++||++||+||||||||||+|+|+|+  ++|++|+|.++|+++...+...  +.
T Consensus         2 aI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~--~~p~~G~i~i~G~~i~~~~~~~--~~   75 (238)
T d1vpla_           2 AVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--IKPSSGIVTVFGKNVVEEPHEV--RK   75 (238)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTTCHHHH--HT
T ss_pred             CEEEEeEEEEECC--EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECcEecccChHHH--Hh
Confidence            4899999999964  7899999999999999999999999999999999998  7899999999999987654332  24


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .++|+||++.+++.+++.+++.+.....    +   ....+..+.+...++.+++. +..++++.. |||||||||+|||
T Consensus        76 ~i~~vpq~~~~~~~ltv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-lSgG~~qrv~iA~  146 (238)
T d1vpla_          76 LISYLPEEAGAYRNMQGIEYLRFVAGFY----A---SSSSEIEEMVERATEIAGLG-EKIKDRVST-YSKGMVRKLLIAR  146 (238)
T ss_dssp             TEEEECTTCCCCTTSBHHHHHHHHHHHH----C---CCHHHHHHHHHHHHHHHCCG-GGGGSBGGG-CCHHHHHHHHHHH
T ss_pred             hEeEeeeccccCCCccHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHhCCCH-HHHhhhhhh-CCHHHHHHHHHHH
Confidence            5899999999999999999987654332    1   12445566777888999996 567777764 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIA  311 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~  311 (325)
                      ||+++|++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+ ||||++|++|+|+++|+++..
T Consensus       147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~-~drv~vl~~G~iv~~g~~~el  220 (238)
T d1vpla_         147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL-CDRIALIHNGTIVETGTVEEL  220 (238)
T ss_dssp             HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT-CSEEEEEETTEEEEEEEHHHH
T ss_pred             HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999988899999999999999988 799999999999999988753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-56  Score=398.69  Aligned_cols=221  Identities=24%  Similarity=0.371  Sum_probs=178.9

Q ss_pred             EEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhcc
Q 020520           78 LQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG  157 (325)
Q Consensus        78 l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~  157 (325)
                      |+++||+|+|+.+.+.+|+||||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|+++..++...+++ .
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~lr~-~   78 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLIDGHDLALADPNWLRR-Q   78 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHHH-H
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc--CCCCCCEEEECCEEecccchhhhhc-e
Confidence            789999999976667799999999999999999999999999999999998  7899999999999999988876543 4


Q ss_pred             EEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHH-----hHHHHHHhcCCccccccccCCCCCChHHHHHH
Q 020520          158 LFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYA-----YLYPKLERLSMKTDFLNRNVNEGFSGGERKRN  232 (325)
Q Consensus       158 i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv  232 (325)
                      ++|+||++.+|+ .|+.+|+.+.         .+....++...     .+.+.+..+....+..-...+..|||||||||
T Consensus        79 i~~v~Q~~~lf~-~Ti~eNi~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRv  148 (241)
T d2pmka1          79 VGVVLQDNVLLN-RSIIDNISLA---------NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI  148 (241)
T ss_dssp             EEEECSSCCCTT-SBHHHHHCTT---------STTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHH
T ss_pred             EEEEecccccCC-cccccccccc---------CccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHH
Confidence            899999998876 4888887542         11222222221     12233333333222111122346999999999


Q ss_pred             HHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccHHH
Q 020520          233 EILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASIAT  312 (325)
Q Consensus       233 ~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~~~  312 (325)
                      +|||||+++|+|||||||||+||+.+++.|++.|+++.+ ++|+|+||||++.+. . ||+|++|++|+|++.|+++  +
T Consensus       149 alARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~-~-~D~i~vl~~G~Iv~~G~~~--e  223 (241)
T d2pmka1         149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVK-N-ADRIIVMEKGKIVEQGKHK--E  223 (241)
T ss_dssp             HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGGT-T-SSEEEEEETTEEEEEECHH--H
T ss_pred             hhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHH-h-CCEEEEEECCEEEEECCHH--H
Confidence            999999999999999999999999999999999999864 789999999999875 4 6999999999999999875  4


Q ss_pred             HHHh
Q 020520          313 VLEE  316 (325)
Q Consensus       313 ~~~~  316 (325)
                      ++++
T Consensus       224 ll~~  227 (241)
T d2pmka1         224 LLSE  227 (241)
T ss_dssp             HHHS
T ss_pred             HHhC
Confidence            5554

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-57  Score=407.59  Aligned_cols=228  Identities=23%  Similarity=0.288  Sum_probs=184.1

Q ss_pred             CcEEEEEEEEEECCC-cccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           76 PLLQVTGLTAVIAES-KQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~-~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ..|+++||+|+|++. ++.+|+||||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|+++..++....+
T Consensus        10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl--~~p~~G~I~i~g~~i~~~~~~~~r   87 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL--YQPTGGQLLLDGKPLPQYEHRYLH   87 (251)
T ss_dssp             CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGGGBCHHHHH
T ss_pred             ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc--cCCCcCEEEECCEecchhhhHHHH
Confidence            469999999999752 34699999999999999999999999999999999998  789999999999999988876654


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHH-----HHhHHHHHHhcCCccc-cccccCCCCCChHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEF-----YAYLYPKLERLSMKTD-FLNRNVNEGFSGGE  228 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~-~~~~~~~~~LSgGq  228 (325)
                      + .+++++|+|.+|+ .|+.+++.++..        ......+.     ...+.+.++.+....+ ..++.. .+|||||
T Consensus        88 ~-~i~~v~Q~~~lf~-~tv~eni~~g~~--------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~-~~LSGGq  156 (251)
T d1jj7a_          88 R-QVAAVGQEPQVFG-RSLQENIAYGLT--------QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAG-SQLSGGQ  156 (251)
T ss_dssp             H-HEEEECSSCCCCS-SBHHHHHHCSCS--------SCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSC-SSSCHHH
T ss_pred             H-HhhhccccccccC-cchhhhhhhhhc--------ccchHHHHHHHHHHHHHHHHHHhccccchhhHhccC-ccCChhH
Confidence            3 4899999999886 488888754321        01111111     1223344555533222 233333 3599999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      ||||+|||||+++|+|||||||||+||+.++..+++.|+++.++ ++|||+||||++.+..  ||+|++|++|+|++.|+
T Consensus       157 kQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~--aDrI~vl~~G~iv~~Gt  234 (251)
T d1jj7a_         157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ--ADHILFLEGGAIREGGT  234 (251)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT--CSEEEEEETTEEEEEEC
T ss_pred             ceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHh--CCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999998754 8899999999998754  69999999999999998


Q ss_pred             ccHHHHHHhCCee
Q 020520          308 ASIATVLEEGGYK  320 (325)
Q Consensus       308 ~~~~~~~~~~~~~  320 (325)
                      ++  ++++++++|
T Consensus       235 ~~--eLl~~~~~y  245 (251)
T d1jj7a_         235 HQ--QLMEKKGCY  245 (251)
T ss_dssp             HH--HHHHHTSHH
T ss_pred             HH--HHHhCCcHH
Confidence            75  567777754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.1e-55  Score=396.53  Aligned_cols=227  Identities=24%  Similarity=0.343  Sum_probs=181.7

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      ..|+++||+|+|++...++|+||||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|+++..++...++.
T Consensus        12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~~r~   89 (253)
T d3b60a1          12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--YDIDEGHILMDGHDLREYTLASLRN   89 (253)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT--TCCSEEEEEETTEETTTBCHHHHHH
T ss_pred             eEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc--cCCCccEEEECCcccchhhhhhhhh
Confidence            36999999999986666799999999999999999999999999999999998  7899999999999999988776554


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHh-----HHHHHHhcCCccc-cccccCCCCCChHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY-----LYPKLERLSMKTD-FLNRNVNEGFSGGER  229 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~-~~~~~~~~~LSgGqr  229 (325)
                       .++|++|++.+|.. +..+++.+..        ......++..+.     +.+.++.+....+ ...... .+||||||
T Consensus        90 -~i~~v~Q~~~l~~~-ti~~n~~~~~--------~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~-~~LSGGqk  158 (253)
T d3b60a1          90 -QVALVSQNVHLFND-TVANNIAYAR--------TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG-VLLSGGQR  158 (253)
T ss_dssp             -TEEEECSSCCCCSS-BHHHHHHTTT--------TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS-CSSCHHHH
T ss_pred             -eEEEEeeccccCCc-chhhhhhhcC--------cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCC-CCcCHHHH
Confidence             48899999988765 5555543321        011222222211     2234444432211 222333 35999999


Q ss_pred             HHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCcc
Q 020520          230 KRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDAS  309 (325)
Q Consensus       230 QRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~  309 (325)
                      |||+|||||+++|+|||||||||+||+.+++.|++.|+++.+ ++|||+||||++.+. . ||+|++|++|+|++.|+++
T Consensus       159 QRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~-~-~D~v~vl~~G~Iv~~G~~~  235 (253)
T d3b60a1         159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-Q-ADEIVVVEDGIIVERGTHS  235 (253)
T ss_dssp             HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-T-CSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHH-h-CCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999999864 789999999999875 4 6999999999999999875


Q ss_pred             HHHHHHhCCee
Q 020520          310 IATVLEEGGYK  320 (325)
Q Consensus       310 ~~~~~~~~~~~  320 (325)
                        ++++.+++|
T Consensus       236 --eLl~~~~~y  244 (253)
T d3b60a1         236 --ELLAQHGVY  244 (253)
T ss_dssp             --HHHHHTSSH
T ss_pred             --HHHhCCcHH
Confidence              567777754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=8e-55  Score=393.65  Aligned_cols=227  Identities=22%  Similarity=0.345  Sum_probs=182.5

Q ss_pred             CCcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520           75 QPLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus        75 ~~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      ...|+++||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|+|+  ++|++|+|.++|+++..++...++
T Consensus        14 ~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~lr   91 (255)
T d2hyda1          14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--YDVTSGQILIDGHNIKDFLTGSLR   91 (255)
T ss_dssp             SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--SCCSEEEEEETTEEGGGSCHHHHH
T ss_pred             CCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc--CCccccccccCCEEcccCCHHHhh
Confidence            346999999999987667899999999999999999999999999999999998  789999999999999988877655


Q ss_pred             hccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHh-----HHHHHHhcCCcccc-ccccCCCCCChHH
Q 020520          155 LAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY-----LYPKLERLSMKTDF-LNRNVNEGFSGGE  228 (325)
Q Consensus       155 ~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~-~~~~~~~~LSgGq  228 (325)
                      . .++|++|++.+|+. |+.+|+.++         .+....++..+.     +.+.+..+....+. .... +.+|||||
T Consensus        92 ~-~i~~v~Q~~~lf~~-Ti~eNi~~g---------~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~-g~~LSgGq  159 (255)
T d2hyda1          92 N-QIGLVQQDNILFSD-TVKENILLG---------RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER-GVKLSGGQ  159 (255)
T ss_dssp             H-TEEEECSSCCCCSS-BHHHHHGGG---------CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTSCHHH
T ss_pred             h-eeeeeeccccCCCC-CHHHHHhcc---------CcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCC-CCCcCHHH
Confidence            4 48899999988864 898887543         122223332221     12223333211111 1112 23599999


Q ss_pred             HHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          229 RKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       229 rQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      ||||+|||||+++|+|||||||||+||+.+++.|++.|.++.+ ++|+|+||||++.+. . ||+|++|++|+|++.|++
T Consensus       160 ~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~~~-~-~D~ii~l~~G~iv~~G~~  236 (255)
T d2hyda1         160 KQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTIT-H-ADKIVVIENGHIVETGTH  236 (255)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTT-T-CSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-h-CCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999999864 689999999999875 3 699999999999999987


Q ss_pred             cHHHHHHhCCee
Q 020520          309 SIATVLEEGGYK  320 (325)
Q Consensus       309 ~~~~~~~~~~~~  320 (325)
                      +  ++++..++|
T Consensus       237 ~--eLl~~~~~y  246 (255)
T d2hyda1         237 R--ELIAKQGAY  246 (255)
T ss_dssp             H--HHHHTTSHH
T ss_pred             H--HHHhCCcHH
Confidence            5  567777743

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=9.3e-57  Score=404.06  Aligned_cols=221  Identities=21%  Similarity=0.324  Sum_probs=176.4

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      ||+++||+|+|++ ++++|+||||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|+++..++...+++ 
T Consensus         1 mle~knvsf~Y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~~r~-   76 (242)
T d1mv5a_           1 MLSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITIDGQPIDNISLENWRS-   76 (242)
T ss_dssp             CEEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--SCCSBSCEEETTEESTTTSCSCCTT-
T ss_pred             CEEEEEEEEECCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh--hCCCCCEEEECCEEeccccHHHHHh-
Confidence            6899999999975 46799999999999999999999999999999999998  7899999999999998877554433 


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCc------cccccccC---CCCCChH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMK------TDFLNRNV---NEGFSGG  227 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~---~~~LSgG  227 (325)
                      .++|+||++.+|+. |+.+|+.....        ......+.+.    .++..++.      ++..+..+   +.+||||
T Consensus        77 ~i~~v~Q~~~lf~~-ti~eNi~~~~~--------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGG  143 (242)
T d1mv5a_          77 QIGFVSQDSAIMAG-TIRENLTYGLE--------GDYTDEDLWQ----VLDLAFARSFVENMPDQLNTEVGERGVKISGG  143 (242)
T ss_dssp             TCCEECCSSCCCCE-EHHHHTTSCTT--------SCSCHHHHHH----HHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred             heEEEccccccCCc-chhhheecccc--------cccchhhHHH----HHHHHHhhhhhccCcccccccccCCCCCCCHH
Confidence            47899999998876 88887643211        1112222221    22222111      11222222   2359999


Q ss_pred             HHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcC
Q 020520          228 ERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGD  307 (325)
Q Consensus       228 qrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~  307 (325)
                      |||||+|||||+++|+|||||||||+||+.++..+++.|+++. +++|||+||||++.+. . ||+|++|++|+|++.|+
T Consensus       144 qkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~-~-~D~i~vl~~G~iv~~G~  220 (242)
T d1mv5a_         144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-D-ADKIYFIEKGQITGSGK  220 (242)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-H-CSEEEEEETTEECCCSC
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHH-h-CCEEEEEECCEEEEECC
Confidence            9999999999999999999999999999999999999999986 4789999999999886 4 69999999999999998


Q ss_pred             ccHHHHHHhCCe
Q 020520          308 ASIATVLEEGGY  319 (325)
Q Consensus       308 ~~~~~~~~~~~~  319 (325)
                      ++  ++++.+++
T Consensus       221 ~~--eLl~~~~~  230 (242)
T d1mv5a_         221 HN--ELVATHPL  230 (242)
T ss_dssp             HH--HHHHHCHH
T ss_pred             HH--HHHhCChH
Confidence            75  55666654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.3e-55  Score=390.91  Aligned_cols=211  Identities=21%  Similarity=0.327  Sum_probs=185.0

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .|++ ++.++|++  .. + ||||++. ||+++|+||||||||||+|+|+|+  .+|++|+|.++|+++..+++.   +.
T Consensus         2 ~l~v-~~~k~~g~--~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl--~~p~~G~I~~~G~~i~~~~~~---~r   70 (240)
T d2onka1           2 FLKV-RAEKRLGN--FR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGI--VKPDRGEVRLNGADITPLPPE---RR   70 (240)
T ss_dssp             CEEE-EEEEEETT--EE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCTT---TS
T ss_pred             EEEE-EEEEEECC--EE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcC--CCCCceEEEECCEECCcCCHH---Hc
Confidence            3677 67899964  33 3 8999995 689999999999999999999998  789999999999999887654   24


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      +++|+||++.+|+.+|+.+|+.++.         ......+..+++.++++.+++. ++.++.+.+ |||||||||+|||
T Consensus        71 ~ig~v~Q~~~l~~~ltV~enl~~~l---------~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~-LSGG~kQRvaiAr  139 (240)
T d2onka1          71 GIGFVPQDYALFPHLSVYRNIAYGL---------RNVERVERDRRVREMAEKLGIA-HLLDRKPAR-LSGGERQRVALAR  139 (240)
T ss_dssp             CCBCCCSSCCCCTTSCHHHHHHTTC---------TTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGG-SCHHHHHHHHHHH
T ss_pred             CceeeccchhhcccchhhHhhhhhh---------cccCHHHHHHHHHHHHHhcCcH-hhhhCChhh-CCHHHHHHHHHHH
Confidence            5889999999999999999986542         1223455667889999999996 688888875 9999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+++|++|||||||+|||+.++..+++.|+++.++ |.|||+||||++++..+ ||||++|++|+|++.|+++.
T Consensus       140 al~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~-adri~vm~~G~ii~~G~~~e  213 (240)
T d2onka1         140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML-ADEVAVMLNGRIVEKGKLKE  213 (240)
T ss_dssp             HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHH-CSEEEEEETTEEEEEECHHH
T ss_pred             HHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHh-CCEEEEEECCEEEEEecHHH
Confidence            999999999999999999999999999999999765 89999999999999988 69999999999999998864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.9e-51  Score=362.64  Aligned_cols=210  Identities=22%  Similarity=0.281  Sum_probs=173.8

Q ss_pred             CcEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhh
Q 020520           76 PLLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSL  155 (325)
Q Consensus        76 ~~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~  155 (325)
                      .+|+++||+++      .+|++|||+|++||++||+||||||||||+++|+|+  . |++|+|.++|+++..++...+..
T Consensus         2 ~il~~~dv~~~------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl--~-~~~G~I~~~g~~i~~~~~~~~~~   72 (231)
T d1l7vc_           2 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--T-SGKGSIQFAGQPLEAWSATKLAL   72 (231)
T ss_dssp             EEEEEEEECCT------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS--C-CCSSEEEESSSBGGGSCHHHHHH
T ss_pred             eEEEEECcccC------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--C-CCceEEEECCEECCcCCHHHHHh
Confidence            36899999743      479999999999999999999999999999999996  3 68999999999998887765543


Q ss_pred             ccEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHH
Q 020520          156 AGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEIL  235 (325)
Q Consensus       156 ~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iA  235 (325)
                       ..++++|+.......++.+++....        . ....   .+.+.++++.+++. +..++.+.+ |||||||||+||
T Consensus        73 -~~~~~~~~~~~~~~~~v~~~~~~~~--------~-~~~~---~~~~~~~~~~~~l~-~~~~~~~~~-LSgG~~Qrv~iA  137 (231)
T d1l7vc_          73 -HRAYLSQQQTPPFATPVWHYLTLHQ--------H-DKTR---TELLNDVAGALALD-DKLGRSTNQ-LSGGEWQRVRLA  137 (231)
T ss_dssp             -HEEEECSCCCCCSSCBHHHHHHHHC--------S-CTTC---HHHHHHHHHHTTCT-TTTTSBGGG-CCHHHHHHHHHH
T ss_pred             -hceeeeccccCCccccHHHHhhhcc--------c-hhhH---HHHHHHHHHhcCCH-hHhCcChhh-cCHHHHHHHHHH
Confidence             3567777765444455555543321        1 1111   23466778888986 567777764 999999999999


Q ss_pred             HHHHh-------CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          236 QLAVL-------GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       236 raL~~-------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      |||++       +|+||||||||+|||+.++..+.++|++++++|+|||+||||++++..+ |||+++|++|+++++|++
T Consensus       138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~-~dri~vl~~G~iv~~G~~  216 (231)
T d1l7vc_         138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRR  216 (231)
T ss_dssp             HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHH-CSBCCBEETTEECCCSBH
T ss_pred             HHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-CCEEEEEECCEEEEECCH
Confidence            99997       7799999999999999999999999999988899999999999999988 699999999999999987


Q ss_pred             cH
Q 020520          309 SI  310 (325)
Q Consensus       309 ~~  310 (325)
                      +.
T Consensus       217 ~e  218 (231)
T d1l7vc_         217 EE  218 (231)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-47  Score=351.75  Aligned_cols=200  Identities=24%  Similarity=0.311  Sum_probs=152.7

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .++++|+++  .  ++++|+||||+|++||++||+||||||||||+++|+|+  ++|++|+|.++|+             
T Consensus        38 ~i~~~~~~~--~--g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl--~~p~~G~I~~~g~-------------   98 (281)
T d1r0wa_          38 NVSFSHLCL--V--GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE--LEASEGIIKHSGR-------------   98 (281)
T ss_dssp             --CHHHHHH--T--TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--SCCSEEEEECCSC-------------
T ss_pred             cEEEEEcCC--C--CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--CcCCCcEEEECCE-------------
Confidence            455555553  2  36899999999999999999999999999999999998  7899999999982             


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHh-----HHHHHHhcCCccc-cccccCCCCCChHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAY-----LYPKLERLSMKTD-FLNRNVNEGFSGGERK  230 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~-~~~~~~~~~LSgGqrQ  230 (325)
                       ++|++|++.+|+. |+.+++.+...          .........     ....+..+....+ ...+.. .+|||||||
T Consensus        99 -i~~v~Q~~~l~~~-tv~eni~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQ  165 (281)
T d1r0wa_          99 -VSFCSQFSWIMPG-TIKENIIFGVS----------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRA  165 (281)
T ss_dssp             -EEEECSSCCCCSE-EHHHHHTTTSC----------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHH
T ss_pred             -EEEEeccccccCc-eeecccccccc----------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhc-cCCCHHHHH
Confidence             7899999988875 78887643210          111111111     1112222322111 122222 359999999


Q ss_pred             HHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCccH
Q 020520          231 RNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDASI  310 (325)
Q Consensus       231 Rv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~~~  310 (325)
                      ||+|||||+++|+||||||||++||+.+++.+++.+......++|+|+|||+++.+. . ||+|++|++|+|++.|+++.
T Consensus       166 Rv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~-aDrI~vl~~G~i~~~Gt~~e  243 (281)
T d1r0wa_         166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-K-ADKILILHQGSSYFYGTFSE  243 (281)
T ss_dssp             HHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-T-CSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-h-CCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999999999999875454456789999999998775 4 69999999999999998864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=6.7e-47  Score=330.74  Aligned_cols=195  Identities=17%  Similarity=0.297  Sum_probs=156.1

Q ss_pred             cEEEEEEEEEECCCcccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhc
Q 020520           77 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLA  156 (325)
Q Consensus        77 ~l~~~~ls~~y~~~~~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~  156 (325)
                      .|+++||+++|+   +++|+|+||+|++||++||+||||||||||+|+|+|+  ++|++|+|.++|+++...      +.
T Consensus         2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl--~~p~~G~I~~~g~~i~~~------~~   70 (200)
T d1sgwa_           2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--LKPLKGEIIYNGVPITKV------KG   70 (200)
T ss_dssp             EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGGGG------GG
T ss_pred             eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc--cccCCCEEEECCEehhHh------cC
Confidence            489999999994   4799999999999999999999999999999999998  789999999999998532      23


Q ss_pred             cEEEeccCCccCCCcchHHHHHHHHHHHhhhcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHH
Q 020520          157 GLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQ  236 (325)
Q Consensus       157 ~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAr  236 (325)
                      .+++++|+..++..+++.+++.......    +. ....    ..+.+.++.+++. + .++.++ +|||||||||+|||
T Consensus        71 ~i~~~~~~~~~~~~~t~~~~l~~~~~~~----~~-~~~~----~~~~~~l~~~~~~-~-~~~~~~-~LSgG~~qrv~ia~  138 (200)
T d1sgwa_          71 KIFFLPEEIIVPRKISVEDYLKAVASLY----GV-KVNK----NEIMDALESVEVL-D-LKKKLG-ELSQGTIRRVQLAS  138 (200)
T ss_dssp             GEEEECSSCCCCTTSBHHHHHHHHHHHT----TC-CCCH----HHHHHHHHHTTCC-C-TTSBGG-GSCHHHHHHHHHHH
T ss_pred             cEEEEeecccCCCCcCHHHHHHHHHHhc----CC-ccCH----HHHHHHHHHcCCc-c-cccccC-cCCCcHHHHHHHHH
Confidence            5889999998888889888876543321    11 1122    2345567777763 2 345555 49999999999999


Q ss_pred             HHHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC-CcEEEEEeCChhHHhhhCCcEEEEEeC
Q 020520          237 LAVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP-KNSLLMITHYRRLLEFIKPTFIHIMED  299 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvIivtHd~~~~~~~~~d~i~vl~~  299 (325)
                      ||+.+|++|||||||+|||+.+++.+++.|.++.++ +.+||.++|+++    + ||++.+|++
T Consensus       139 al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~----~-~D~~~~l~~  197 (200)
T d1sgwa_         139 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS----Y-CDVNENLHK  197 (200)
T ss_dssp             HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT----T-SSEEEEGGG
T ss_pred             HHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhh----h-cchhhheee
Confidence            999999999999999999999999999999998755 545555555442    4 698888753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.73  E-value=4.5e-20  Score=154.86  Aligned_cols=161  Identities=12%  Similarity=0.054  Sum_probs=96.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHhhccEEEeccCCccCCCcchHHHHHHHHHHHhh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRR  186 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~~~Q~~~~~~~~~~~~~~~~~~~~~~~  186 (325)
                      .++|+||||||||||+++|+|.  +++..|.+.+.+.+.....   + +.+............ ...            .
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~--l~~~~g~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~-~~~------------~   62 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVER--LGKRAIGFWTEEVRDPETK---K-RTGFRIITTEGKKKI-FSS------------K   62 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH--HGGGEEEEEEEEEC----------CCEEEEEETTCCEEE-EEE------------T
T ss_pred             EEEEECCCCcHHHHHHHHHHhc--CCCCcceEEECCcchHHHH---H-hhhhhhhhhhHHHHH-Hhh------------h
Confidence            4799999999999999999997  6788999999876543211   1 111111111110000 000            0


Q ss_pred             hcCCCCCChHHHHHhHHHHHHhcCCccccccccCCCCCChHHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 020520          187 KLGQPEIGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV  266 (325)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L  266 (325)
                      ......  .          ..+.+..     .... .+|+|+++|.++++++..+|++|++|||....+  ....+.+.+
T Consensus        63 ~~~~~~--~----------~~~~~~~-----~~~~-~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l  122 (178)
T d1ye8a1          63 FFTSKK--L----------VGSYGVN-----VQYF-EELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLV  122 (178)
T ss_dssp             TCCCSS--E----------ETTEEEC-----HHHH-HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHH
T ss_pred             hhhhhh--h----------hhhhhcC-----cchh-hhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHH
Confidence            000000  0          0111111     1111 389999999999999999999999999854432  223344444


Q ss_pred             Hhcc-CCCcEEEEEeCChhHHhhhCCcEEEEEeCCEEEEEcCc
Q 020520          267 NGLL-TPKNSLLMITHYRRLLEFIKPTFIHIMEDGRIIKTGDA  308 (325)
Q Consensus       267 ~~l~-~~g~tvIivtHd~~~~~~~~~d~i~vl~~G~iv~~g~~  308 (325)
                      .++. ..+.++|+++|+..... . ++++..+.+|+++.-+..
T Consensus       123 ~~~l~~~~~~il~~~h~~~~~~-~-~~~i~~~~~~~i~~v~~~  163 (178)
T d1ye8a1         123 RQIMHDPNVNVVATIPIRDVHP-L-VKEIRRLPGAVLIELTPE  163 (178)
T ss_dssp             HHHHTCTTSEEEEECCSSCCSH-H-HHHHHTCTTCEEEECCTT
T ss_pred             HHHhccCCCEEEEEEccHHHHH-h-hceEEEEeCCEEEEECCc
Confidence            4433 34789999999876443 3 477878899999876543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=1.6e-10  Score=107.84  Aligned_cols=73  Identities=21%  Similarity=0.323  Sum_probs=60.8

Q ss_pred             CCChHHHHHHHHHHHH----HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEEE
Q 020520          223 GFSGGERKRNEILQLA----VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHIM  297 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL----~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~vl  297 (325)
                      .||||||.+++||..+    ..++++++||||+++||+..+..+.++|.++...+.-+|++||++.++..  +|+++.+
T Consensus       332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~--ad~~~~V  408 (427)
T d1w1wa_         332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK--SDALVGV  408 (427)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT--CSEEEEE
T ss_pred             hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh--cccEEEE
Confidence            4899999998887554    35778999999999999999999999999886555679999999988775  4776543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=3.1e-07  Score=81.73  Aligned_cols=75  Identities=25%  Similarity=0.362  Sum_probs=62.3

Q ss_pred             CCChHHHHHHHHHHHH----HhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHhhhCCcEEEE--
Q 020520          223 GFSGGERKRNEILQLA----VLGADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLEFIKPTFIHI--  296 (325)
Q Consensus       223 ~LSgGqrQRv~iAraL----~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~~~~~d~i~v--  296 (325)
                      .+|+|||+...++..+    ...+.++++|||-++|+|...+.+.+.|++..+ +.-||++||.+.++..  +|+++.  
T Consensus       219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~~~--~d~~~~v~  295 (308)
T d1e69a_         219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVMEA--ADLLHGVT  295 (308)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGGG--CSEEEEEE
T ss_pred             hhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHh--cccEEEEE
Confidence            4899999998887654    346899999999999999999999999999864 4689999999998875  477754  


Q ss_pred             EeCC
Q 020520          297 MEDG  300 (325)
Q Consensus       297 l~~G  300 (325)
                      +.+|
T Consensus       296 ~~~g  299 (308)
T d1e69a_         296 MVNG  299 (308)
T ss_dssp             ESSS
T ss_pred             EeCC
Confidence            4555

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.37  E-value=9.5e-07  Score=76.02  Aligned_cols=61  Identities=25%  Similarity=0.265  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHHH-HhccCCCcEEEEEeCChhHHh
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKAV-NGLLTPKNSLLMITHYRRLLE  287 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvIivtHd~~~~~  287 (325)
                      .|.+|+.-..-.+.+..++|+||+..|=|+.....+...+ ..+.+.+..++++||..++..
T Consensus       100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            4444444444444566799999999999998777665544 444555778999999987655

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=3.3e-06  Score=72.97  Aligned_cols=61  Identities=25%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcCcCCCHHHHHHHHHH-HHhccC-CCcEEEEEeCChhHHh
Q 020520          227 GERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVAKA-VNGLLT-PKNSLLMITHYRRLLE  287 (325)
Q Consensus       227 GqrQRv~iAraL~~~p~lLlLDEPtsgLD~~~~~~i~~~-L~~l~~-~g~tvIivtHd~~~~~  287 (325)
                      .|.+|+.-+.--+.+..++|+||+..|=++.....+... +..+.. .+..+|++||..++..
T Consensus       106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            444444433334556679999999999999888777544 555643 3567899999866543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=7.7e-07  Score=73.04  Aligned_cols=33  Identities=30%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+++.+|++.+| +++|+|+|||||||++.+|.-
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            578889999886 999999999999999999863

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=1.3e-05  Score=65.79  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      |.++.|+||||||||||++.|..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            88999999999999999999876

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=1.2e-05  Score=64.22  Aligned_cols=21  Identities=38%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|+|++|||||||++.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            789999999999999999975

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.52  E-value=1.9e-05  Score=63.44  Aligned_cols=25  Identities=36%  Similarity=0.607  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .|+++.|.|++||||||+.+.|+..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=3.1e-05  Score=68.28  Aligned_cols=28  Identities=36%  Similarity=0.465  Sum_probs=22.9

Q ss_pred             EEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           99 NLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.+.++ +.+|+|||||||||++++|.-
T Consensus        19 ~i~f~~~-lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred             EEeCCCC-eEEEECCCCCcHHHHHHHHHH
Confidence            3555554 999999999999999998844

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=3.1e-05  Score=66.18  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV  139 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~  139 (325)
                      +|++.+++|+||+|||||+|.|.|-  ..-..|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~--~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG--LKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT--CCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch--hhhhccCcc
Confidence            5899999999999999999999984  223456664

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=2.7e-05  Score=62.41  Aligned_cols=26  Identities=27%  Similarity=0.526  Sum_probs=23.4

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.+.++.|+|++||||||+.+.|+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999874

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.45  E-value=2.7e-05  Score=62.41  Aligned_cols=25  Identities=24%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+|-++.|+|++||||||+.+.|+-
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999999985

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.42  E-value=0.00011  Score=63.97  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=28.1

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHh
Q 020520           92 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus        92 ~~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~  126 (325)
                      -+-|+++..-+.+|+++.|.|++|+|||||+.-++
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            34566555458999999999999999999986665

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00038  Score=60.05  Aligned_cols=46  Identities=17%  Similarity=0.231  Sum_probs=34.1

Q ss_pred             HHHhCCCEEEEeCcCcC-----CCHHHHHHHHHHHHhccCC-CcEEEEEeCC
Q 020520          237 LAVLGADLAILDEIDSG-----LDVDALRDVAKAVNGLLTP-KNSLLMITHY  282 (325)
Q Consensus       237 aL~~~p~lLlLDEPtsg-----LD~~~~~~i~~~L~~l~~~-g~tvIivtHd  282 (325)
                      .-..+|+++|+|--++-     -|......++..|+.+++. +.+||++.|-
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            34579999999955432     2666777788888887654 8899999984

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.33  E-value=4.2e-05  Score=61.41  Aligned_cols=23  Identities=39%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..++|+|+.|||||||++.|+-.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999874

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.32  E-value=5.3e-05  Score=60.91  Aligned_cols=22  Identities=36%  Similarity=0.504  Sum_probs=19.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+++|+|.+|||||||++-|..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            3789999999999999987765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=5.6e-05  Score=63.60  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +|.++.|+||||||||||.+.|.-
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999988864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=5.9e-05  Score=68.99  Aligned_cols=28  Identities=32%  Similarity=0.547  Sum_probs=23.4

Q ss_pred             EEEEeCCCEEEEEcCCCccHHHHHHHHh
Q 020520           99 NLLVNEGEVHAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus        99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~  126 (325)
                      ++++..+.+.+|+|||||||||++.+|.
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4555656699999999999999999983

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.27  E-value=2.9e-05  Score=66.56  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEE
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVV  139 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~  139 (325)
                      +|.+.+++|+||+|||||+|.|.|-  ..-..|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~--~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE--LGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred             ccceEEEECCCCccHHHHHHhhccH--hHhhhcccc
Confidence            5889999999999999999999994  223456665

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=5.1e-05  Score=60.83  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+.|+||+|+|||||++.++..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.27  E-value=7e-05  Score=59.77  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..++.|.|++||||||+.+.|+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999985

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.24  E-value=6.2e-05  Score=61.36  Aligned_cols=22  Identities=41%  Similarity=0.448  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++||.|++|||||||.+.|.-.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998763

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.24  E-value=8e-05  Score=59.54  Aligned_cols=26  Identities=23%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++|-.++|.|++||||||+.+.|+--
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999873

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.21  E-value=7.4e-05  Score=58.59  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG  142 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g  142 (325)
                      +++.|.|++|||||||.+.|..-     ..|.+.++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~-----~~~~~~~~~   34 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK-----NPGFYNINR   34 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH-----STTEEEECH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh-----CCCCEEech
Confidence            47889999999999999977541     135555553

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=7.4e-05  Score=58.57  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+.|+||+||||||+.+.|+-.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4778999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=6.2e-05  Score=61.39  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +|-++.|+|++||||||+.+.|+-
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            577999999999999999999985

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.14  E-value=0.00011  Score=59.02  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+++|.|+.||||||+++.|+-
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.11  E-value=0.0001  Score=58.58  Aligned_cols=20  Identities=40%  Similarity=0.571  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|+.||||||+.+.|+-
T Consensus         7 I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999975

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.11  E-value=0.00012  Score=58.11  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++.|.||+||||||+.+.|+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999974

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.04  E-value=0.00013  Score=60.01  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|||||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999994

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00016  Score=60.36  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++||.|++|||||||.+.|+-.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00018  Score=59.10  Aligned_cols=20  Identities=50%  Similarity=0.634  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+||||||||||++.|+-
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.90  E-value=0.00022  Score=60.13  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|+|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00024  Score=57.00  Aligned_cols=22  Identities=41%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.|+|-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999994

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00028  Score=57.70  Aligned_cols=22  Identities=18%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+.|+||||+|||||++-|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00024  Score=58.54  Aligned_cols=20  Identities=45%  Similarity=0.586  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+||||||||||++.|+-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.84  E-value=0.00025  Score=58.10  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+++|+||.||||||+.+.|+-
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999986

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.84  E-value=0.00023  Score=57.47  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999994

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.83  E-value=0.00018  Score=58.51  Aligned_cols=20  Identities=35%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +||+|+.++|||||++.|+|
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999988

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.82  E-value=0.00022  Score=57.11  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|++|||||||++.|.|
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            688999999999999999988

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00031  Score=56.44  Aligned_cols=22  Identities=45%  Similarity=0.649  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|+|..|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999983

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00032  Score=56.71  Aligned_cols=22  Identities=50%  Similarity=0.604  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +++|+|..|+|||||++.|+|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999984

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.0003  Score=54.90  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|++|+|||||++.|.+
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999998

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00044  Score=56.27  Aligned_cols=26  Identities=19%  Similarity=0.493  Sum_probs=23.9

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      |.+|+++.|.||+|+|||||+.-++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999977765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.73  E-value=0.00034  Score=55.91  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.|+|++||||||+.+.|+-.
T Consensus         3 I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999873

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.00038  Score=56.35  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+||+|..|+|||||++.|+|-
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999983

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.00027  Score=57.15  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +||+|..|+|||||++.|+|-
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999984

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.69  E-value=0.00034  Score=56.25  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.|+|++||||||+.+.|+-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999999975

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.0004  Score=56.99  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -.++.|+||.||||||+.+.|+--
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999984

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.69  E-value=0.00037  Score=54.43  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.+.+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999887

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00036  Score=57.39  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|||||||++.|.|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.66  E-value=0.0004  Score=54.62  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3889999999999999999883

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.65  E-value=0.00039  Score=55.91  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++.|.|++||||||+.+.|+..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6788999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.64  E-value=0.00032  Score=57.64  Aligned_cols=27  Identities=26%  Similarity=0.478  Sum_probs=23.8

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.++.++.|+||.||||||+.+.|+--
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999873

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00046  Score=54.41  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.|+|.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.0005  Score=56.12  Aligned_cols=21  Identities=43%  Similarity=0.626  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++||.|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00056  Score=55.82  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++.|+||.||||||..+.|+-
T Consensus         3 iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999986

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.55  E-value=0.00065  Score=55.38  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.1

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|=.+.|+||.||||||+.+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3577888999999999999999994

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.54  E-value=0.00055  Score=54.68  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.|+|+.||||||+.+.|+-.
T Consensus         4 IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.53  E-value=0.00044  Score=56.43  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++.|+||.||||||+.+.|+-
T Consensus         5 ~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999986

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.00039  Score=55.77  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.++|||||++.|.|.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.0006  Score=55.95  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++++|..|||||||.+.|+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999986

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00068  Score=54.92  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.-+++.++|+.||||||+.+-++-
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4457999999999999999998754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.50  E-value=0.00065  Score=54.62  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.|+||.||||||+.+.|+-
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999965

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.49  E-value=0.00069  Score=53.70  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|+.|+|||||++.|.|-
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999994

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.47  E-value=0.00063  Score=57.09  Aligned_cols=24  Identities=38%  Similarity=0.497  Sum_probs=19.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++.+++++||+|+||||.+-=|+-
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998644454

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.44  E-value=0.00058  Score=55.80  Aligned_cols=23  Identities=30%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      =+++|-|+.||||||+++.|...
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999884

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.42  E-value=0.00075  Score=56.14  Aligned_cols=21  Identities=43%  Similarity=0.533  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|-||.||||||+.+.|+-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578889999999999999987

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.41  E-value=0.00077  Score=56.41  Aligned_cols=43  Identities=26%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENL  145 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i  145 (325)
                      ++|-++-|.|.+|||||||.+.|.-.+......-.+.++|..+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            5788999999999999999999873100000112567777544

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0008  Score=55.63  Aligned_cols=21  Identities=43%  Similarity=0.629  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|.||.||||||+.+.|+-
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999987

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.33  E-value=0.00093  Score=54.04  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999986

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.32  E-value=0.00085  Score=57.94  Aligned_cols=22  Identities=36%  Similarity=0.663  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|.+|+|||||+|.|.|-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3889999999999999999994

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.30  E-value=0.00069  Score=57.81  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKG  142 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g  142 (325)
                      ..+.|.||.|||||||.+.|++.  .  ..+-+.++.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~--~--~~~~~~i~~   65 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE--T--QGNVIVIDN   65 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH--T--TTCCEEECT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH--h--hcceEEEec
Confidence            45889999999999999999995  2  133455654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.29  E-value=0.00097  Score=53.15  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|||||||++.|.+-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999983

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.001  Score=55.15  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++||+|..||||||+++++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.22  E-value=0.00088  Score=59.98  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=22.7

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.|.-+.|.|+.|||||||++.|++.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhh
Confidence            44555899999999999999999996

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0012  Score=55.12  Aligned_cols=25  Identities=36%  Similarity=0.504  Sum_probs=22.5

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|-+++|-|+-||||||+.+.|..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999998876

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0012  Score=54.63  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +|.+++|-|+-||||||+++.|.-
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999999885

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00091  Score=56.14  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++.+++|-|+-||||||+++.|+..
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999985

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0011  Score=53.30  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.|+||.||||||..+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999976

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.18  E-value=0.0012  Score=53.14  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999976

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.00034  Score=55.17  Aligned_cols=22  Identities=41%  Similarity=0.493  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.|+|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999983

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0024  Score=50.88  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=23.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhC---CCCCCCCccE
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG---HPDYEVTEGS  137 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G---l~~~~p~~G~  137 (325)
                      .++|+|.+|+|||||++-+.+   ...+.|+.|.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~   40 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED   40 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcccCccccc
Confidence            488999999999999987665   1224566554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0012  Score=58.62  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++||.|++|||||||.+.|..+
T Consensus        82 iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHH
Confidence            6899999999999999998775

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0016  Score=54.17  Aligned_cols=27  Identities=30%  Similarity=0.452  Sum_probs=23.9

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      =|++|+++.|.|+.|||||||..-++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            388999999999999999999976654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.09  E-value=0.0013  Score=52.07  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=18.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++++|+.|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            367999999999999998876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0014  Score=54.03  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|+.|+|||||++.|.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999987

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.05  E-value=0.0014  Score=54.97  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.|.||+|+|||||+++|+..
T Consensus        48 lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999873

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.03  E-value=0.0014  Score=52.97  Aligned_cols=21  Identities=48%  Similarity=0.574  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +||+|...||||||++.|+|.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999984

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0018  Score=54.17  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +|.+++|-|+-||||||+++.|+-.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHH
Confidence            6999999999999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0018  Score=52.24  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.|+||-||||||+.+.|+-
T Consensus         4 rIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999986

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.96  E-value=0.0018  Score=53.00  Aligned_cols=21  Identities=48%  Similarity=0.612  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+||.||||||+.+.|+-
T Consensus         8 rIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0017  Score=51.88  Aligned_cols=20  Identities=35%  Similarity=0.591  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998876

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.94  E-value=0.0009  Score=56.33  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=18.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHh
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~  126 (325)
                      +..+++++||+|+||||.+-=|+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            44589999999999998764344

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0018  Score=53.72  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++||+|..||||||..+++.-
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0022  Score=54.19  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+.|.||+|+||||++++|+..
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999984

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.90  E-value=0.0018  Score=51.57  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|+.|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.90  E-value=0.0018  Score=51.61  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++++|+.|+|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999987

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0017  Score=51.50  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|++|+|||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999988876

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0019  Score=53.96  Aligned_cols=20  Identities=25%  Similarity=0.370  Sum_probs=18.8

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.|.||+|+|||||+++++.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            67999999999999999987

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0011  Score=55.73  Aligned_cols=22  Identities=36%  Similarity=0.388  Sum_probs=17.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHhC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+++++||+|+||||.+-=|+-
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999987744443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0018  Score=59.57  Aligned_cols=21  Identities=43%  Similarity=0.650  Sum_probs=20.1

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +||+|..|+|||||+|.|.|.
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999995

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.82  E-value=0.00097  Score=58.66  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=17.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++||.|+|||||||+.+.|.-+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i   27 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQI   27 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            7999999999999999988764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.002  Score=57.72  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .-++||+|+.|||||||+..|..
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHH
Confidence            56799999999999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.80  E-value=0.0023  Score=54.06  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=20.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.++.|.||.|+|||||++.++-
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            457899999999999999987765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0021  Score=51.48  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|+.|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.80  E-value=0.0028  Score=52.36  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHH
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVL  125 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l  125 (325)
                      +++|+++.|.|++|+|||||+.-+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            889999999999999999998543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.74  E-value=0.0027  Score=50.76  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=24.2

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..++|.+++|-|+=|||||||.|.++.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence            346899999999999999999999876

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.002  Score=52.28  Aligned_cols=30  Identities=30%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCcc
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEG  136 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G  136 (325)
                      .+.|+|.+|+|||||++-+.-...+.||-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            478999999999999998854334678888

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.72  E-value=0.0018  Score=54.39  Aligned_cols=24  Identities=29%  Similarity=0.309  Sum_probs=14.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ...+++++||+|+||||.+-=|+-
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999988644443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.69  E-value=0.0029  Score=52.52  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.+|+++.|.|++|+|||||+--++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            88999999999999999999866653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0025  Score=50.37  Aligned_cols=20  Identities=20%  Similarity=0.396  Sum_probs=17.9

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0023  Score=50.60  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|.+|+|||||++.+++
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998766

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.66  E-value=0.0033  Score=52.64  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|.++.|.|++|+|||||+.-++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            88999999999999999999866654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.66  E-value=0.003  Score=52.96  Aligned_cols=25  Identities=28%  Similarity=0.601  Sum_probs=22.3

Q ss_pred             EeCCCEEEEEcCCCccHHHHHHHHh
Q 020520          102 VNEGEVHAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl~~l~  126 (325)
                      +++|+++.|.|+.|||||||.--++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            8899999999999999999986443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0031  Score=50.07  Aligned_cols=30  Identities=33%  Similarity=0.376  Sum_probs=22.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC---CCCCCCcc
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH---PDYEVTEG  136 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl---~~~~p~~G  136 (325)
                      .++|+|..|+|||||++-+.+-   ..+.|+-|
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~   36 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE   36 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence            3789999999999999887762   12446555

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.003  Score=50.89  Aligned_cols=20  Identities=25%  Similarity=0.371  Sum_probs=18.7

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|+.|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998886

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.61  E-value=0.0027  Score=53.24  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.+.||.|+||||+.++|+..
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            679999999999999999974

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0033  Score=49.99  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3789999999999999999885

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.58  E-value=0.0032  Score=52.60  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ...++.++||+|+||||.+-=|+-
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346889999999999988755554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0028  Score=53.04  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=24.0

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -|.+|.++.|.|++|+|||||...++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999999977763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0027  Score=50.24  Aligned_cols=38  Identities=29%  Similarity=0.437  Sum_probs=26.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC---CCCCCCccE-----EEECCEe
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH---PDYEVTEGS-----VVFKGEN  144 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl---~~~~p~~G~-----I~~~g~~  144 (325)
                      .++|+|+.|+|||||++.+.+-   ..+.|+.|.     +.++|.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~   51 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE   51 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEE
Confidence            5889999999999999987652   123455443     3456654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.55  E-value=0.0023  Score=51.50  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++++|+.|+|||||++.+.+
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            477999999999999999876

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.54  E-value=0.0059  Score=49.59  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=26.4

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++..-+.+ .|.-+.|.|++|+|||||.-.+.-
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            466666666 678899999999999999876654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0031  Score=50.33  Aligned_cols=20  Identities=35%  Similarity=0.478  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|+.|+|||||++-+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.48  E-value=0.0031  Score=53.03  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++||+|...||||||++.|.+
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHh
Confidence            699999999999999999987

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.003  Score=50.21  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998876

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.46  E-value=0.0033  Score=50.66  Aligned_cols=20  Identities=35%  Similarity=0.602  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|..|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987775

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.46  E-value=0.0037  Score=51.11  Aligned_cols=21  Identities=48%  Similarity=0.683  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +++|-|.-||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999886

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.44  E-value=0.0074  Score=48.93  Aligned_cols=34  Identities=32%  Similarity=0.350  Sum_probs=25.3

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           93 EILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        93 ~iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..++..-+.+ .|.-+.|.|++|+|||||.-.+..
T Consensus         3 ~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           3 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3455555544 567899999999999999876654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0036  Score=49.53  Aligned_cols=20  Identities=35%  Similarity=0.463  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|..|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0033  Score=49.51  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998876

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0036  Score=49.51  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=18.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++-+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988776

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.0038  Score=54.67  Aligned_cols=21  Identities=33%  Similarity=0.317  Sum_probs=18.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++||-|+.|||||||.+.|.-
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            789999999999999987643

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.36  E-value=0.0033  Score=52.84  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.+.||.|+|||||.+++++.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            569999999999999999984

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0043  Score=49.44  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=17.6

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|+.|+|||||++-+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999976654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0046  Score=49.33  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|+|..|+|||||++.+.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.004  Score=49.01  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|..|+|||||++-+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0041  Score=49.22  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988775

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0039  Score=49.85  Aligned_cols=21  Identities=29%  Similarity=0.305  Sum_probs=18.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|.+|+|||||++.+.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988776

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.24  E-value=0.0041  Score=54.90  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .-+.++||.|+|||+|.|+|+..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            44668999999999999999984

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0044  Score=49.59  Aligned_cols=20  Identities=35%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|..|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0044  Score=49.02  Aligned_cols=20  Identities=20%  Similarity=0.332  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|..|+|||||++-+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.21  E-value=0.0037  Score=49.80  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.|+|++|+|||||++.+.+
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            477999999999999999886

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.0047  Score=51.36  Aligned_cols=43  Identities=14%  Similarity=0.201  Sum_probs=29.0

Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~  285 (325)
                      +.+++|+||.- ++.......+...+.+.. ....+++++++.+-
T Consensus       101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~  143 (224)
T d1sxjb2         101 KHKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSNK  143 (224)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG
T ss_pred             ceEEEEEeccc-ccchhHHHHHhhhccccc-cceeeeeccCchhh
Confidence            35799999965 556667777777776643 34567778887654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.006  Score=52.47  Aligned_cols=24  Identities=29%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..-+.|.||.|+|||+|++.|+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            344789999999999999999984

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.09  E-value=0.0045  Score=52.05  Aligned_cols=42  Identities=19%  Similarity=0.242  Sum_probs=32.2

Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      +.+++|+||.-. |.......+.+.+.+.. ....+|++|++.+
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~  172 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS  172 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred             CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence            566999999854 78888888888887653 3456899999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.0052  Score=48.67  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=22.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC---CCCCCCcc
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH---PDYEVTEG  136 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl---~~~~p~~G  136 (325)
                      .++|+|..|+|||||++-+.+-   ..+.|+.|
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~   37 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG   37 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence            4789999999999999876652   22345555

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.0048  Score=50.23  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999997765

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.03  E-value=0.0064  Score=51.13  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ...+.|.||.|+||||+++.|+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357889999999999999999874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0041  Score=49.51  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++++|+.|+|||||++.+++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0051  Score=48.92  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|..|+|||||++-+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0051  Score=49.03  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987665

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0057  Score=49.18  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++-+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987765

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.98  E-value=0.0059  Score=54.38  Aligned_cols=23  Identities=35%  Similarity=0.297  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .-++||.|+-|||||||+..|..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHH
Confidence            45799999999999999988875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.006  Score=48.35  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++++|..|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999988774

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.006  Score=48.32  Aligned_cols=30  Identities=33%  Similarity=0.440  Sum_probs=22.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC---CCCCCCcc
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH---PDYEVTEG  136 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl---~~~~p~~G  136 (325)
                      .++|+|+.|+|||||++-+.+-   ..+.|+-|
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~   36 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE   36 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence            3789999999999999887762   12455544

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.0061  Score=50.59  Aligned_cols=41  Identities=17%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          242 ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       242 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      .+++|+||. -.+.......++..|.+... ..-++++|++..
T Consensus       100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~  140 (227)
T d1sxjc2         100 FKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYAH  140 (227)
T ss_dssp             CEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred             eEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence            369999996 46788888888888887643 345666776644

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.86  E-value=0.0064  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+.|.||.|+|||+|.+.|+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            3779999999999999999973

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.0065  Score=53.16  Aligned_cols=28  Identities=18%  Similarity=0.259  Sum_probs=26.0

Q ss_pred             EEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          100 LLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.|-+|+..+|+|++|+|||||+..|+.
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            5788999999999999999999988876

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0045  Score=49.33  Aligned_cols=20  Identities=20%  Similarity=0.355  Sum_probs=8.6

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987776

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.79  E-value=0.0069  Score=48.08  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=18.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++++|..|+|||||++-+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367999999999999998775

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.79  E-value=0.0065  Score=52.61  Aligned_cols=47  Identities=30%  Similarity=0.488  Sum_probs=28.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccEEEECCEeCCCCCHHHHh
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERS  154 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~  154 (325)
                      -+||+|+.|+|||||+..|...-......|++. +|..+.+..+.++.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~   50 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKL   50 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHH
Confidence            379999999999999998843100122345443 34444455554433

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0076  Score=47.69  Aligned_cols=20  Identities=25%  Similarity=0.413  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999986644

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.66  E-value=0.0099  Score=51.59  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             EEEEcCCCccHHHHHHHHhCCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGHP  129 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl~  129 (325)
                      ++++|.-.||||||++.|+|..
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999963

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.63  E-value=0.008  Score=47.63  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988665

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0077  Score=52.39  Aligned_cols=23  Identities=43%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+++|+||-++|||||++.|.|.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            47999999999999999999994

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.0085  Score=48.27  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            388999999999999987664

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.0083  Score=47.30  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=18.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++-+.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999987765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0083  Score=48.13  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++++|..|+|||||++-+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999997766

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.54  E-value=0.0092  Score=49.97  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++||.|+-||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999964

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.52  E-value=0.0092  Score=49.71  Aligned_cols=29  Identities=31%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCcc
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEG  136 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G  136 (325)
                      .+.|+|.+|+|||||++-+..- ...|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~-~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL-HVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH-HCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-CcCCCCC
Confidence            5789999999999999876532 2456666

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.51  E-value=0.0069  Score=52.18  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ..-+.|.||+|+|||+|++.+++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            344889999999999999999994

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.45  E-value=0.011  Score=51.56  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHP  129 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~  129 (325)
                      .++++|.-.||||||++.|+|..
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999963

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.44  E-value=0.0092  Score=50.92  Aligned_cols=21  Identities=29%  Similarity=0.631  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.+.||.|+|||+|++.|+..
T Consensus        45 iLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHHHH
Confidence            679999999999999999984

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.43  E-value=0.0098  Score=47.69  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=17.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++++|..|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999975544

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.39  E-value=0.0096  Score=54.46  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=22.4

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++..+.|.||.||||||++..+...
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhh
Confidence            34568999999999999999998873

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.01  Score=48.00  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=18.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++|+|..|+|||||++-+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999977655

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.19  E-value=0.019  Score=46.12  Aligned_cols=33  Identities=36%  Similarity=0.369  Sum_probs=24.2

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           94 ILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        94 iL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .++..-+.+ .|.-+.|.|++|+|||||.-.+.-
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2           5 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            455544444 577899999999999999855543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.016  Score=49.82  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=24.2

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -|+.|.++-|.||+|+|||||+-.++.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHH
Confidence            688999999999999999999876665

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.13  E-value=0.013  Score=47.69  Aligned_cols=21  Identities=38%  Similarity=0.612  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +||+|.-.+|||||++.|.|.
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEeccCCcHHHHHHHHHhh
Confidence            799999999999999999984

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.13  E-value=0.013  Score=46.67  Aligned_cols=29  Identities=31%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCCCCCCCccE
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHPDYEVTEGS  137 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~~~~p~~G~  137 (325)
                      .+.|+|..|+|||||++-+..-  ..|+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~--~~~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII--HEAGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH--HSCCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhC--CCCCccE
Confidence            4789999999999999887653  3355563

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.13  E-value=0.0073  Score=51.06  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=18.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++.|.||.|+||||+++.++..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            4566799999999999999863

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.012  Score=50.33  Aligned_cols=21  Identities=19%  Similarity=0.506  Sum_probs=19.6

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.|.||.|+|||+|++.++..
T Consensus        41 iLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEecCCCCCchHHHHHHHHH
Confidence            789999999999999999984

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.015  Score=48.40  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+++|=|.=||||||+++.|.-.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            47899999999999999999863

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.52  E-value=0.015  Score=53.99  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHP  129 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~  129 (325)
                      =+.++||+|+|||-|.|.|++++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            37799999999999999999964

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.41  E-value=0.017  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+||+|..-+|||||++.|+|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999984

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.38  E-value=0.02  Score=45.71  Aligned_cols=30  Identities=30%  Similarity=0.224  Sum_probs=23.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC-CCCCCCcc
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH-PDYEVTEG  136 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl-~~~~p~~G  136 (325)
                      .+.|+|..|+|||||++-+..- ..+.||-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            3689999999999999887652 23457766

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.021  Score=50.37  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+.++||+|+|||.|.+.|+-.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            5789999999999999999985

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.96  E-value=0.021  Score=49.80  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+||||..-+|||||++.|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999974

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.77  E-value=0.029  Score=48.35  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=23.5

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -++.|.++-|.||+|+|||||+-.++.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHH
Confidence            578999999999999999999755554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.76  E-value=0.035  Score=47.78  Aligned_cols=28  Identities=29%  Similarity=0.528  Sum_probs=25.2

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -|+.|.++-|.||+|||||||+-.++..
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHH
Confidence            5789999999999999999999877763

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.75  E-value=0.035  Score=47.99  Aligned_cols=29  Identities=24%  Similarity=0.330  Sum_probs=25.3

Q ss_pred             EEEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520           99 NLLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus        99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      =+.+-+|+..+|+|+.|+|||||+..++-
T Consensus        62 l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            35889999999999999999999777653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.59  E-value=0.027  Score=48.81  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=17.4

Q ss_pred             EEEEcCCCccHHHHHHHHh
Q 020520          108 HAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~  126 (325)
                      +||+|..|||||||+..|+
T Consensus         9 i~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           9 IGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            7999999999999998873

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.023  Score=47.47  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=18.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++.|.|.=|||||||++-+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            678999999999999988876

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.54  E-value=0.031  Score=45.95  Aligned_cols=20  Identities=30%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +||+|.-++|||||+..|.+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.39  E-value=0.034  Score=47.86  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+++|.|.-|.|||||++.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.38  E-value=0.032  Score=46.16  Aligned_cols=44  Identities=14%  Similarity=0.169  Sum_probs=34.1

Q ss_pred             HhCCCEEEEeCcCcCC-CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 020520          239 VLGADLAILDEIDSGL-DVDALRDVAKAVNGLLTPKNSLLMITHY  282 (325)
Q Consensus       239 ~~~p~lLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvIivtHd  282 (325)
                      +.+.++|++|+-=.=. +...+..+..++..+.+.|+.+|++|..
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~  139 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR  139 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence            5588999999874322 5777888999999887777888887774

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=92.36  E-value=0.028  Score=50.58  Aligned_cols=28  Identities=25%  Similarity=0.280  Sum_probs=25.4

Q ss_pred             EEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          101 LVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       101 ~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++++..+.+.||.|+|||||.+.|++.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            4477889999999999999999999996

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.27  E-value=0.037  Score=45.22  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+||+|.=.+|||||++.|.|.
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSC
T ss_pred             EEEEEEccCCcHHHHHHHHHhh
Confidence            3899999999999999999985

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.035  Score=46.42  Aligned_cols=43  Identities=16%  Similarity=0.213  Sum_probs=32.8

Q ss_pred             CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHH
Q 020520          242 ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLL  286 (325)
Q Consensus       242 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~  286 (325)
                      .+++|+||.= .|+......+++.|.+.. ....+|++|++..-+
T Consensus       116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGS
T ss_pred             CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCcccc
Confidence            4599999995 488888888888887643 346889999886543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.038  Score=45.39  Aligned_cols=41  Identities=12%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             CCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChh
Q 020520          242 ADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRR  284 (325)
Q Consensus       242 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~  284 (325)
                      .+++|+||. -.|...+...+++.|.+-. .+..+|++|++..
T Consensus       109 ~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~  149 (207)
T d1a5ta2         109 AKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPE  149 (207)
T ss_dssp             CEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred             cceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChh
Confidence            679999986 4456777888888887653 3456788999876

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.05  E-value=0.017  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHhCC
Q 020520          106 EVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       106 e~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .-+.|+|+-|+|||||+|.++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHHh
Confidence            35789999999999999999997

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.99  E-value=0.036  Score=47.66  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=27.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhCCC---------CCCCCccEEEEC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGHP---------DYEVTEGSVVFK  141 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl~---------~~~p~~G~I~~~  141 (325)
                      .+||||-.-+|||||++.|++-.         ...|.-|.|.+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~   47 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP   47 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence            58999999999999999999731         123556887654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=0.037  Score=50.16  Aligned_cols=41  Identities=15%  Similarity=0.076  Sum_probs=29.6

Q ss_pred             EEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhHHh
Q 020520          244 LAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRLLE  287 (325)
Q Consensus       244 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~~~  287 (325)
                      ++++||.-+-....   .+.+++.+.++.|..++++++++..+.
T Consensus       279 ~l~lDE~~~~~~~~---~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~  319 (433)
T d1e9ra_         279 WLFIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTSQLD  319 (433)
T ss_dssp             EEEESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHHHHH
T ss_pred             EEEechHhhhcccH---HHHHHHHHhCCCCceEEEEeccHHHHH
Confidence            68889975543322   356677777777999999999976653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=0.061  Score=44.01  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      -+.|||+.|.|||+++.-|+-.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            3679999999999999998873

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.063  Score=46.11  Aligned_cols=21  Identities=24%  Similarity=0.446  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      -+.||||.|+|||++++-++-
T Consensus        41 n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999886

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.16  E-value=0.068  Score=43.58  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +||+|.-++|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            789999999999999998763

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.05  E-value=0.065  Score=47.07  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ++.++||+|+|||.|.+.|+-.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5778999999999999998874

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.74  E-value=0.072  Score=46.63  Aligned_cols=20  Identities=45%  Similarity=0.836  Sum_probs=18.0

Q ss_pred             eCCCEEEEEcCCCccHHHHH
Q 020520          103 NEGEVHAIMGKNGSGKSTLS  122 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl  122 (325)
                      +.|++..+.|-||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            45899999999999999986

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.54  E-value=0.038  Score=47.78  Aligned_cols=28  Identities=21%  Similarity=0.406  Sum_probs=24.4

Q ss_pred             EEEeCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          100 LLVNEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.|-+|+.++|+|++|+|||+|+..++-
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHh
Confidence            5889999999999999999999875443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.49  E-value=0.081  Score=46.63  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=22.6

Q ss_pred             EEEeCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          100 LLVNEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       100 l~i~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      ....+| ++.+.||.|+|||.|.+.|++-
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence            455555 5556899999999999999984

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.48  E-value=0.085  Score=47.28  Aligned_cols=21  Identities=33%  Similarity=0.661  Sum_probs=18.8

Q ss_pred             EEEEcCCCccHHHHHHHHhCC
Q 020520          108 HAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +.++||+|+|||-|.|.|+-+
T Consensus        71 iLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             eeeeCCCCccHHHHHHHHHhh
Confidence            557899999999999999875

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.13  E-value=0.079  Score=46.50  Aligned_cols=19  Identities=53%  Similarity=0.907  Sum_probs=17.3

Q ss_pred             CCCEEEEEcCCCccHHHHH
Q 020520          104 EGEVHAIMGKNGSGKSTLS  122 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl  122 (325)
                      .|++..+.|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4889999999999999986

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.11  E-value=0.093  Score=43.42  Aligned_cols=19  Identities=37%  Similarity=0.492  Sum_probs=17.5

Q ss_pred             EEEEcCCCccHHHHHHHHh
Q 020520          108 HAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~  126 (325)
                      ++++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999998874

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=88.83  E-value=0.09  Score=46.49  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|=|+=||||||+++.|...
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC-
T ss_pred             EEEEECCcCCCHHHHHHHHHHH
Confidence            4788999999999999999874

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.55  E-value=0.059  Score=46.72  Aligned_cols=28  Identities=18%  Similarity=0.404  Sum_probs=24.3

Q ss_pred             EEEEeCCCEEEEEcCCCccHHHHHHHHh
Q 020520           99 NLLVNEGEVHAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus        99 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~  126 (325)
                      =+.+-+|+.++|+|+.|+|||||+.-++
T Consensus        62 l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          62 LVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            3688999999999999999999986544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.24  E-value=0.18  Score=44.55  Aligned_cols=22  Identities=32%  Similarity=0.364  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+.|=|+=|+||||+++.|+..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEECCccCCHHHHHHHHHHH
Confidence            4778899999999999999984

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.99  E-value=0.11  Score=45.53  Aligned_cols=19  Identities=47%  Similarity=0.882  Sum_probs=17.7

Q ss_pred             CCCEEEEEcCCCccHHHHH
Q 020520          104 EGEVHAIMGKNGSGKSTLS  122 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl  122 (325)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6888999999999999998

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.07  E-value=0.16  Score=38.09  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=21.2

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++|=.+.+.|-+|||||||.+.|.-
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            3566788999999999999999854

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=86.73  E-value=0.05  Score=40.44  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=17.7

Q ss_pred             EeCCCEEEEEcCCCccHHHHH
Q 020520          102 VNEGEVHAIMGKNGSGKSTLS  122 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKSTLl  122 (325)
                      +++|+.+.|.+|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            367999999999999999544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=86.70  E-value=0.17  Score=41.86  Aligned_cols=20  Identities=35%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ++++|.-.+|||||+..|+.
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999964

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=86.12  E-value=0.14  Score=45.20  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhCC
Q 020520          107 VHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .++|=|+=||||||+++.|.-.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999874

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=85.51  E-value=0.14  Score=38.30  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=24.2

Q ss_pred             HHhCCCEEEEeCcCcCCCHHHHHHHHHHHHhccCC
Q 020520          238 AVLGADLAILDEIDSGLDVDALRDVAKAVNGLLTP  272 (325)
Q Consensus       238 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~  272 (325)
                      ...+-+++|+||-= .+|..+...+..+++.+...
T Consensus        91 ~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~~~  124 (136)
T d1a1va1          91 SGGAYDIIICDECH-STDATSILGIGTVLDQAETA  124 (136)
T ss_dssp             GGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred             hhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHHHC
Confidence            34577999999984 46887777777776665433

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.30  E-value=0.23  Score=40.19  Aligned_cols=43  Identities=12%  Similarity=0.096  Sum_probs=34.1

Q ss_pred             CCCEEEEeCcCcCCCHHHHHHHHHHHHhccCCCcEEEEEeCChhH
Q 020520          241 GADLAILDEIDSGLDVDALRDVAKAVNGLLTPKNSLLMITHYRRL  285 (325)
Q Consensus       241 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvIivtHd~~~  285 (325)
                      +.+|+|+||. -.|...+...+++.|.+-- .+..+|++|++.+-
T Consensus        79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp-~~t~fiLit~~~~~  121 (198)
T d2gnoa2          79 TRKYVIVHDC-ERMTQQAANAFLKALEEPP-EYAVIVLNTRRWHY  121 (198)
T ss_dssp             SSEEEEETTG-GGBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGG
T ss_pred             CCEEEEEeCc-cccchhhhhHHHHHHhCCC-CCceeeeccCChhh
Confidence            3589999994 6678899999999998753 35678899998763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.06  E-value=0.17  Score=43.35  Aligned_cols=16  Identities=38%  Similarity=0.461  Sum_probs=13.4

Q ss_pred             EEEEEcCCCccHHHHH
Q 020520          107 VHAIMGKNGSGKSTLS  122 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl  122 (325)
                      .+.|.|+-||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4678899999999765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=84.97  E-value=0.25  Score=42.02  Aligned_cols=24  Identities=33%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhCC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      +-.++|+|-.-+|||||++.|.|-
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             ceEEEEEecCccchhhhhhhhhcc
Confidence            345999999999999999999994

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.92  E-value=0.28  Score=37.54  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             CCEEEEEcCCCccHHH-HHHHHhC
Q 020520          105 GEVHAIMGKNGSGKST-LSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKST-Ll~~l~G  127 (325)
                      |.+..|+||=.||||| |++.+-.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            6788999999999999 7787655

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.58  E-value=0.19  Score=44.51  Aligned_cols=19  Identities=37%  Similarity=0.546  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHh
Q 020520          108 HAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~  126 (325)
                      +||+|.-|+|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999884

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.56  E-value=0.23  Score=41.52  Aligned_cols=19  Identities=37%  Similarity=0.522  Sum_probs=17.1

Q ss_pred             EEEEcCCCccHHHHHHHHh
Q 020520          108 HAIMGKNGSGKSTLSKVLV  126 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~  126 (325)
                      ++|+|.-++|||||+..|+
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            7899999999999997774

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.53  E-value=0.17  Score=42.91  Aligned_cols=16  Identities=25%  Similarity=0.430  Sum_probs=13.5

Q ss_pred             EEEEEcCCCccHHHHH
Q 020520          107 VHAIMGKNGSGKSTLS  122 (325)
Q Consensus       107 ~~~lvG~NGsGKSTLl  122 (325)
                      -+.|+|+-||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4679999999999764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.24  E-value=0.26  Score=41.38  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHhC
Q 020520          105 GEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       105 Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      +.-+.|.|+.|+||+++.+.|..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            45578999999999999999975

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.05  E-value=0.12  Score=43.94  Aligned_cols=19  Identities=16%  Similarity=0.274  Sum_probs=17.1

Q ss_pred             EeCCCEEEEEcCCCccHHH
Q 020520          102 VNEGEVHAIMGKNGSGKST  120 (325)
Q Consensus       102 i~~Ge~~~lvG~NGsGKST  120 (325)
                      +.+|+.+.|.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            4589999999999999996

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=83.54  E-value=0.24  Score=44.60  Aligned_cols=20  Identities=25%  Similarity=0.526  Sum_probs=16.9

Q ss_pred             EEEEcCCCccHHHHHHHHhC
Q 020520          108 HAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..|||+.|.|||+++.-|+-
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            46899999999999876654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=83.26  E-value=0.3  Score=47.23  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=21.3

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ...+.+.|.|+||||||+-.|.|+.
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3568999999999999998887754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=83.09  E-value=0.34  Score=41.20  Aligned_cols=26  Identities=12%  Similarity=0.314  Sum_probs=23.4

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhCC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVGH  128 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~Gl  128 (325)
                      .+--++.|.||-++|||||+++|+.+
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            55668899999999999999999996

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.00  E-value=0.23  Score=41.68  Aligned_cols=18  Identities=33%  Similarity=0.482  Sum_probs=17.0

Q ss_pred             EEEEcCCCccHHHHHHHH
Q 020520          108 HAIMGKNGSGKSTLSKVL  125 (325)
Q Consensus       108 ~~lvG~NGsGKSTLl~~l  125 (325)
                      ++|+|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999888

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.53  E-value=0.31  Score=47.34  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             eCCCEEEEEcCCCccHHHHHHHHhC
Q 020520          103 NEGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       103 ~~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      .+.+.+.|.|+||||||+-.|.|+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~  147 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQ  147 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHH
Confidence            4578999999999999999998866

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=82.30  E-value=0.38  Score=42.72  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=17.2

Q ss_pred             CCCEEEEEcCCCccHHHHHH
Q 020520          104 EGEVHAIMGKNGSGKSTLSK  123 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~  123 (325)
                      .+.++.|.||-|+||||++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHH
Confidence            35699999999999999874

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.30  E-value=0.37  Score=46.80  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHhC
Q 020520          104 EGEVHAIMGKNGSGKSTLSKVLVG  127 (325)
Q Consensus       104 ~Ge~~~lvG~NGsGKSTLl~~l~G  127 (325)
                      ..+.+.|.|+||||||+-.|.|+.
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~  113 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQ  113 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHH
Confidence            568999999999999999888765