Citrus Sinensis ID: 020536

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MQAQLLVGPITPTTGSDAFSSIIKNSFLISSPRRSTTGSNRHRRTRHRLVVASSSWSSSAAAAAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFEDGVRISTWAELRRKLQYERHWKNYNSKEEYSSFYRKAPVREVQEENPGDKRGSFTAVLRSAFISLFLLKVFGYQPSLTFSSLTALFDGKLDGGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSGVVVLVVVAVWIGSNLARCAPLPQGALIALLYMSLKLQTDSS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccEEEEEEEcccccccccEEEEcccccccEEEEEEEEEcccccccccccEEEEEEHHHHHcccccccccccccHHHHHHHHHEEEccccc
ccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHEEEcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccHHHHccccccccccHHHHHHHcccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEHHHHHHHHHccccHHHHHHHHHHHHEEEcccc
mqaqllvgpitpttgsdafSSIIKNSflissprrsttgsnrhrrtRHRLVVASSSWSSSAAAAAIngepdhykVLGVAQSATLADIKRAYRLLARkyhpdvskdsrAVEVFKTIRCAYEVLSNEVTRIKYDralkfrtdsdrsrrgnrryssefedgvRISTWAELRRKLQYERHwknynskeeyssfyrkapvrevqeenpgdkrgsFTAVLRSAFISLFLLKVfgyqpsltfssltalfdgkldggykIGYLIAWILGGRGGILLTLCLSFASwvcgktssGVVVLVVVAVWIGsnlarcaplpQGALIALLYMSLKLQTDSS
mqaqllvgpitpttgsdaFSSIIKnsflissprrsttgsnrhrrtrhrlvvassswssSAAAAAINGEPDHYKVLGVAQSATLADIKRAYRLLArkyhpdvskdsraveVFKTIRCAYevlsnevtrikydralkfrtdsdrsrrgnrryssefedgvristWAELRRKLQYerhwknynskeeyssfyrkapvrevqeenpgdkrgsFTAVLRSAFISLFLLKVFGYQPSLTFSSLTALFDGKLDGGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSGVVVLVVVAVWIGSNLARCAPLPQGALIALLYMSLKLQTDSS
MQAQLLVGPITPTTGSDAFSSIIKNSFLISSPRRSTTGSNRHRRTRHRLVVassswsssaaaaaINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFEDGVRISTWAELRRKLQYERHWKNYNSKEEYSSFYRKAPVREVQEENPGDKRGSFTAVLRSAFISLFLLKVFGYQPSLTFSSLTALFDGKLDGGYKIGYliawilggrggilltlclSFASWVCGKTSSGvvvlvvvavWIGSNLARCAPLPQGALIALLYMSLKLQTDSS
*********************II****************************************AINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF*******************DGVRISTWAELRRKLQYERHWKNYNS******F*******************SFTAVLRSAFISLFLLKVFGYQPSLTFSSLTALFDGKLDGGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSGVVVLVVVAVWIGSNLARCAPLPQGALIALLYMSLK******
****LLV************************************************************EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRAL*******************FEDGVRIST***************************************************RSAFISLFLLKVFGYQPSLTFSSLTALFDGKLDGGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSGVVVLVVVAVWIGSNLARCAPLPQGALIALLYMSLKLQT***
MQAQLLVGPITPTTGSDAFSSIIKNSFLISS**************RHRL************AAAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRT***************FEDGVRISTWAELRRKLQYERHWKNYNSKEEYSSFYRKAPVR**********RGSFTAVLRSAFISLFLLKVFGYQPSLTFSSLTALFDGKLDGGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSGVVVLVVVAVWIGSNLARCAPLPQGALIALLYMSLKLQTDSS
*QAQLLVGPITPTTG*******************************************SAAAAAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDS*****GNRRYSSEFEDGVRISTWAELRRKLQYERHWKNYNSKEEYSSFYRKA*************RGSFTAVLRSAFISLFLLKVFGYQPSLTFSSLTALFDGKLDGGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSGVVVLVVVAVWIGSNLARCAPLPQGALIALLYMSLKLQT***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiii
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MQAQLLVGPITPTTGSDAFSSIIKNSFLISSPRRSTTGSNRHRRTRHRLVVASSSWSSSAAAAAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFEDGVRISTWAELRRKLQYERHWKNYNSKEEYSSFYRKAPVREVQEENPGDKRGSFTAVLRSAFISLFLLKVFGYQPSLTFSSLTALFDGKLDGGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSGVVVLVVVAVWIGSNLARCAPLPQGALIALLYMSLKLQTDSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
A7GT07 366 Chaperone protein DnaJ OS yes no 0.193 0.172 0.603 2e-15
Q75VW3 356 Chaperone protein DnaJ OS yes no 0.286 0.261 0.444 2e-15
A9VHU0 368 Chaperone protein DnaJ OS yes no 0.193 0.171 0.555 1e-14
B0JW23 374 Chaperone protein DnaJ OS yes no 0.193 0.168 0.603 2e-14
C4L424 368 Chaperone protein DnaJ OS yes no 0.193 0.171 0.571 2e-14
B7HCT9 371 Chaperone protein DnaJ OS yes no 0.193 0.169 0.539 3e-14
B7IYG6 371 Chaperone protein DnaJ OS yes no 0.193 0.169 0.539 3e-14
Q818F0 371 Chaperone protein DnaJ OS yes no 0.193 0.169 0.539 3e-14
B8HLD2 374 Chaperone protein DnaJ OS yes no 0.193 0.168 0.587 3e-14
B7JN38 371 Chaperone protein DnaJ OS yes no 0.193 0.169 0.539 4e-14
>sp|A7GT07|DNAJ_BACCN Chaperone protein DnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1 Back     alignment and function desciption
 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 52/63 (82%)

Query: 70  DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
           D+Y+VLGV++SA+  +IK+AYR LA+KYHPDVSK+  AVE FK ++ AYEVLS+E  R +
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRRLAKKYHPDVSKEENAVEKFKEVQEAYEVLSDEQKRAQ 64

Query: 130 YDR 132
           YD+
Sbjct: 65  YDQ 67
Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Bacillus cereus subsp. cytotoxis (strain NVH 391-98) (taxid: 315749)
>sp|Q75VW3|DNAJ_HYDTT Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|A9VHU0|DNAJ_BACWK Chaperone protein DnaJ OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|B0JW23|DNAJ_MICAN Chaperone protein DnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|C4L424|DNAJ_EXISA Chaperone protein DnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|B7HCT9|DNAJ_BACC4 Chaperone protein DnaJ OS=Bacillus cereus (strain B4264) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|B7IYG6|DNAJ_BACC2 Chaperone protein DnaJ OS=Bacillus cereus (strain G9842) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|Q818F0|DNAJ_BACCR Chaperone protein DnaJ OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|B8HLD2|DNAJ_CYAP4 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|B7JN38|DNAJ_BACC0 Chaperone protein DnaJ OS=Bacillus cereus (strain AH820) GN=dnaJ PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
359482129309 PREDICTED: uncharacterized protein LOC10 0.944 0.993 0.585 8e-95
297739762285 unnamed protein product [Vitis vinifera] 0.864 0.985 0.604 3e-90
224123776332 predicted protein [Populus trichocarpa] 0.972 0.951 0.575 4e-84
449446758316 PREDICTED: uncharacterized protein LOC10 0.953 0.981 0.547 1e-83
356571705307 PREDICTED: chaperone protein DnaJ-like [ 0.938 0.993 0.578 2e-83
15238746333 chaperone DnaJ-domain containing protein 0.984 0.960 0.520 5e-82
297807841331 DNAJ heat shock N-terminal domain-contai 0.978 0.960 0.520 2e-76
255568910292 chaperone protein DNAj, putative [Ricinu 0.889 0.989 0.515 3e-76
224145988334 predicted protein [Populus trichocarpa] 0.987 0.961 0.556 7e-76
168026073 432 predicted protein [Physcomitrella patens 0.781 0.587 0.278 1e-22
>gi|359482129|ref|XP_002276836.2| PREDICTED: uncharacterized protein LOC100260668 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 189/323 (58%), Positives = 234/323 (72%), Gaps = 16/323 (4%)

Query: 1   MQAQLLVGPITPTTGSDAFSSIIKNSFLISSPRRSTTGSNRHRRTRHRLVVASSSWSSSA 60
           MQA+L+VGP +   G    S+  K   L+  PR  + G  R  + R R            
Sbjct: 1   MQARLMVGP-SSINGGGLISAAAKGMILLVDPRTRSHGHGRTAKCRCR------------ 47

Query: 61  AAAAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEV 120
             AAING+ DHY VLG++++A+  DIKRAYRLLARKYHPDVSKDS+A EVFK+IR AYE+
Sbjct: 48  --AAINGDQDHYAVLGLSRAASSVDIKRAYRLLARKYHPDVSKDSQAGEVFKSIRLAYEI 105

Query: 121 LSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFEDGVRISTWAELRRKLQYERHWKNYN 180
           LSNE TR +YDRAL+F+  +    RG++ Y+ EFED +R   WA+LRRK+Q ER+W+ YN
Sbjct: 106 LSNEATRSQYDRALRFQEHTGWPWRGSQNYNHEFEDRIRTYRWADLRRKMQRERYWERYN 165

Query: 181 SKEEYSSFYRKAPVREVQEENPGDKRGSFTAVLRSAFISLFLLKVFGYQPSLTFSSLTAL 240
           +  +  S Y +      +EE P ++RG FT VLRSAF+SLFL++ FG Q +LTF++L A 
Sbjct: 166 ANGQNFSAYSETD-EIFEEETPDEERGPFTEVLRSAFLSLFLMQTFGSQIALTFTALMAF 224

Query: 241 FDGKLDGGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSGVVVLVVVAVWIGSNLA 300
            D KLD GYK+GYLIAWILGGRGGILLTLCLSFASWVCGKTSS VV LVVVA+W+GSNLA
Sbjct: 225 VDRKLDAGYKLGYLIAWILGGRGGILLTLCLSFASWVCGKTSSSVVTLVVVAMWVGSNLA 284

Query: 301 RCAPLPQGALIALLYMSLKLQTD 323
           R APLPQGAL+ LLYMS+KLQ D
Sbjct: 285 RYAPLPQGALLTLLYMSIKLQVD 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739762|emb|CBI29944.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224123776|ref|XP_002319161.1| predicted protein [Populus trichocarpa] gi|222857537|gb|EEE95084.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446758|ref|XP_004141138.1| PREDICTED: uncharacterized protein LOC101205024 [Cucumis sativus] gi|449515603|ref|XP_004164838.1| PREDICTED: uncharacterized protein LOC101224715 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571705|ref|XP_003554014.1| PREDICTED: chaperone protein DnaJ-like [Glycine max] Back     alignment and taxonomy information
>gi|15238746|ref|NP_197315.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|9758896|dbj|BAB09472.1| unnamed protein product [Arabidopsis thaliana] gi|20260574|gb|AAM13185.1| unknown protein [Arabidopsis thaliana] gi|28059343|gb|AAO30049.1| unknown protein [Arabidopsis thaliana] gi|332005129|gb|AED92512.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807841|ref|XP_002871804.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317641|gb|EFH48063.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255568910|ref|XP_002525425.1| chaperone protein DNAj, putative [Ricinus communis] gi|223535238|gb|EEF36915.1| chaperone protein DNAj, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224145988|ref|XP_002325839.1| predicted protein [Populus trichocarpa] gi|222862714|gb|EEF00221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|168026073|ref|XP_001765557.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683195|gb|EDQ69607.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
TAIR|locus:2172374333 AT5G18140 [Arabidopsis thalian 0.981 0.957 0.448 8.5e-65
TAIR|locus:2119465197 J20 "AT4G13830" [Arabidopsis t 0.384 0.634 0.373 8.9e-13
TAIR|locus:2041258 442 AT2G22360 [Arabidopsis thalian 0.209 0.153 0.558 1.5e-12
TIGR_CMR|BA_4538 371 BA_4538 "chaperone protein dna 0.193 0.169 0.539 1.6e-12
TIGR_CMR|CHY_0416 381 CHY_0416 "chaperone protein dn 0.193 0.165 0.593 1.8e-12
TIGR_CMR|CJE_1364297 CJE_1364 "co-chaperone protein 0.187 0.205 0.540 2e-12
TAIR|locus:2140035 447 AT4G39960 [Arabidopsis thalian 0.209 0.152 0.544 2.7e-12
TAIR|locus:2174239268 AT5G59610 [Arabidopsis thalian 0.372 0.451 0.375 3.4e-12
WB|WBGene00001036249 dnj-18 [Caenorhabditis elegans 0.427 0.558 0.347 7.2e-12
DICTYBASE|DDB_G0290017176 DDB_G0290017 "DnaJ homolog sub 0.304 0.562 0.35 7.6e-12
TAIR|locus:2172374 AT5G18140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 152/339 (44%), Positives = 199/339 (58%)

Query:     1 MQAQLLVGPITPTTGSDAFSSIIKNSFLI---SSP---------RRSTTGSNRHRRTRHR 48
             MQ  LLVGPI P  G   FSS   +  L+   S+P         RR   G +R  R R +
Sbjct:     1 MQTHLLVGPI-PLKGYRRFSSSSFSGDLLPPSSNPIGRDLFPHRRRHRDGKSRSYRNRSK 59

Query:    49 LVVXXXXXXXXXXXXXINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAV 108
               +               G  +HY VLG+A++AT  DIKRAYRLLARK+HPDV+KDS+A 
Sbjct:    60 TTITSAAFSSSSNT----GGQNHYAVLGIARNATQGDIKRAYRLLARKFHPDVNKDSKAG 115

Query:   109 EVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFEDGVRIS-TWAELR 167
             E+FK++RC+YEVLSNE TR +YDRALK + +S   R     Y+ E ED ++   TW+E R
Sbjct:   116 ELFKSVRCSYEVLSNEATRTQYDRALKLQENSRFHRVKRHSYTPEVEDAMKYYYTWSEKR 175

Query:   168 RKLQYERHWKNYNSKEEYSSFYRKA-PVREVQEENPGDKRGSFTAVLRSAFISLFLLKVF 226
             ++ ++ R + +Y++    S FY +  P  E   E   D+R SF   L+SAF+S+FLL  F
Sbjct:   176 QRSRHGRFYGHYSTYPN-SHFYAETEPQEEEGVETAPDQRDSFVEALKSAFLSMFLLYTF 234

Query:   227 GYQPSLTFSSLTALFDGKLDGGYKIGYXXXXXXXXXXXXXXXXXXSFASWVCGKTSSGXX 286
             G   SLTFS+ TAL D +LD GYK+G+                  +FASW+CGK SS   
Sbjct:   235 GCLASLTFSTFTALLDKELDMGYKVGFMIAWILGGKGGILLTLCLTFASWLCGKASSSVV 294

Query:   287 XXXXXXXWIGSNLARCAPLPQGALIALLYMSLKLQTDSS 325
                    W+GSNLAR APLPQGAL+ LLYMS+KLQ DS+
Sbjct:   295 VLVLVAMWVGSNLARHAPLPQGALLTLLYMSIKLQVDST 333
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041258 AT2G22360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1364 CJE_1364 "co-chaperone protein DnaJ" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TAIR|locus:2140035 AT4G39960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174239 AT5G59610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00001036 dnj-18 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290017 DDB_G0290017 "DnaJ homolog subfamily C member 5B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025472001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (309 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017724001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)
  •     0.484
GSVIVG00022013001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)
  •     0.483
GSVIVG00001482001
SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)
  •     0.479
GSVIVG00006687001
SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa)
  •     0.475
GSVIVG00022731001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)
  •     0.474
GSVIVG00017185001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)
  •     0.474
GSVIVG00037232001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)
  •     0.473
GSVIVG00018506001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)
  •     0.469
GSVIVG00027610001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (105 aa)
  •     0.464
GSVIVG00019978001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (574 aa)
  •     0.464

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 2e-23
pfam0022663 pfam00226, DnaJ, DnaJ domain 7e-23
PRK14280 376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 2e-21
PRK14293 374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 1e-20
COG0484 371 COG0484, DnaJ, DnaJ-class molecular chaperone with 9e-20
smart0027160 smart00271, DnaJ, DnaJ molecular chaperone homolog 5e-19
cd0625755 cd06257, DnaJ, DnaJ domain or J-domain 7e-19
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 8e-18
PRK14283 378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 9e-18
PRK14278 378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 1e-17
PRK14295 389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 2e-17
PRK14291 382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 2e-17
PRK14276 380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 2e-17
PRK10767 371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 6e-17
TIGR03835 871 TIGR03835, termin_org_DnaJ, terminal organelle ass 8e-17
PRK14281 397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 3e-16
PRK14298 377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 7e-16
PRK14277 386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 1e-15
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 2e-15
PRK14292 371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 7e-15
PRK14279 392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 5e-14
PRK14287 371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 5e-14
PRK14300 372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 6e-14
COG2214237 COG2214, CbpA, DnaJ-class molecular chaperone [Pos 6e-14
PRK14284 391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 7e-14
PRK14290 365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 1e-13
PRK14297 380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 3e-13
PTZ00037 421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 7e-13
PRK14296 372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 8e-13
PRK14285 365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 1e-12
PRK14282 369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 1e-12
PRK14301 373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 2e-12
PRK14289 386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 6e-12
PRK14294 366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 2e-11
PRK14286 372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 2e-09
COG5407 610 COG5407, SEC63, Preprotein translocase subunit Sec 4e-09
PRK14288 369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 5e-09
PRK09430267 PRK09430, djlA, Dna-J like membrane chaperone prot 2e-07
COG5269379 COG5269, ZUO1, Ribosome-associated chaperone zuoti 1e-05
PTZ00341 1136 PTZ00341, PTZ00341, Ring-infected erythrocyte surf 0.002
COG1076174 COG1076, DjlA, DnaJ-domain-containing proteins 1 [ 0.004
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information 
 Score = 98.4 bits (246), Expect = 2e-23
 Identities = 34/63 (53%), Positives = 47/63 (74%)

Query: 70  DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
           D+Y++LGV++ A+  +IK+AYR LA+KYHPD +KD  A E FK I  AYEVLS+   R +
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60

Query: 130 YDR 132
           YD+
Sbjct: 61  YDQ 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain Back     alignment and domain information
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 99.88
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.85
PRK14288 369 chaperone protein DnaJ; Provisional 99.79
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 99.79
PRK14296 372 chaperone protein DnaJ; Provisional 99.78
PRK14279 392 chaperone protein DnaJ; Provisional 99.75
PRK14286 372 chaperone protein DnaJ; Provisional 99.74
PRK14287 371 chaperone protein DnaJ; Provisional 99.74
PRK14283 378 chaperone protein DnaJ; Provisional 99.74
PRK14298 377 chaperone protein DnaJ; Provisional 99.74
PRK14276 380 chaperone protein DnaJ; Provisional 99.74
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.73
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 99.73
PRK14299291 chaperone protein DnaJ; Provisional 99.73
PRK14291 382 chaperone protein DnaJ; Provisional 99.73
PRK14282 369 chaperone protein DnaJ; Provisional 99.73
PTZ00037 421 DnaJ_C chaperone protein; Provisional 99.72
PRK14280 376 chaperone protein DnaJ; Provisional 99.72
PRK14277 386 chaperone protein DnaJ; Provisional 99.72
PRK14278 378 chaperone protein DnaJ; Provisional 99.72
PRK14285 365 chaperone protein DnaJ; Provisional 99.71
PRK14294 366 chaperone protein DnaJ; Provisional 99.71
PRK14295 389 chaperone protein DnaJ; Provisional 99.7
PRK14297 380 chaperone protein DnaJ; Provisional 99.7
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.7
PRK14301 373 chaperone protein DnaJ; Provisional 99.7
KOG0718 546 consensus Molecular chaperone (DnaJ superfamily) [ 99.7
PRK14284 391 chaperone protein DnaJ; Provisional 99.7
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 99.69
PRK10767 371 chaperone protein DnaJ; Provisional 99.69
PRK14281 397 chaperone protein DnaJ; Provisional 99.68
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.68
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 99.68
PRK14300 372 chaperone protein DnaJ; Provisional 99.68
PRK10266306 curved DNA-binding protein CbpA; Provisional 99.67
PRK14293 374 chaperone protein DnaJ; Provisional 99.66
PRK14292 371 chaperone protein DnaJ; Provisional 99.66
PRK14289 386 chaperone protein DnaJ; Provisional 99.66
PRK14290 365 chaperone protein DnaJ; Provisional 99.66
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 99.65
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.64
COG5269379 ZUO1 Ribosome-associated chaperone zuotin [Transla 99.63
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.62
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 99.61
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 99.56
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.56
PHA03102153 Small T antigen; Reviewed 99.55
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 99.54
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 99.49
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 99.44
PRK05014171 hscB co-chaperone HscB; Provisional 99.43
PRK01356166 hscB co-chaperone HscB; Provisional 99.42
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.39
PRK00294173 hscB co-chaperone HscB; Provisional 99.37
PRK03578176 hscB co-chaperone HscB; Provisional 99.36
PTZ00100116 DnaJ chaperone protein; Provisional 99.27
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 99.27
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 99.22
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.18
PHA02624 647 large T antigen; Provisional 99.13
COG5407 610 SEC63 Preprotein translocase subunit Sec63 [Intrac 99.03
PRK01773173 hscB co-chaperone HscB; Provisional 99.01
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 98.91
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 98.88
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 98.21
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 98.12
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 98.1
KOG3192168 consensus Mitochondrial J-type chaperone [Posttran 97.19
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 96.39
KOG0431453 consensus Auxilin-like protein and related protein 96.29
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 95.51
PF03656127 Pam16: Pam16; InterPro: IPR005341 The Pam16 protei 93.94
KOG0724335 consensus Zuotin and related molecular chaperones 91.23
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.88  E-value=3.8e-23  Score=200.39  Aligned_cols=73  Identities=45%  Similarity=0.660  Sum_probs=68.9

Q ss_pred             CCCCchhhcCCCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhhHHHHHhhcccCCC
Q 020536           67 GEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTD  139 (325)
Q Consensus        67 ~~~d~Y~vLgl~~~as~~eIK~aYr~la~~~HPDk~~-~~~a~~~f~~I~~Ay~iL~dp~~R~~YD~~~~~~~~  139 (325)
                      ..+|||+||||+++||++|||+|||+||++||||+|+ +++|+++|++|++|||||+||+||++||+++.....
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            3579999999999999999999999999999999999 789999999999999999999999999999876654

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] Back     alignment and domain information
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
2cug_A88 Solution Structure Of The J Domain Of The Pseudo Dn 4e-13
3lz8_A329 Structure Of A Putative Chaperone Dnaj From Klebsie 1e-12
2dn9_A79 Solution Structure Of J-Domain From The Dnaj Homolo 2e-12
2ctp_A78 Solution Structure Of J-Domain From Human Dnaj Subf 1e-11
2kqx_A73 Nmr Structure Of The J-Domain (Residues 2-72) In Th 8e-11
2dmx_A92 Solution Structure Of The J Domain Of Dnaj Homolog 3e-10
1hdj_A77 Human Hsp40 (Hdj-1), Nmr Length = 77 1e-09
1bq0_A103 J-Domain (Residues 1-77) Of The Escherichia Coli N- 7e-09
1xbl_A107 Nmr Structure Of The J-Domain (Residues 2-76) In Th 1e-08
2lo1_A71 Nmr Structure Of The Protein Bc008182, A Dnaj-Like 1e-08
1bqz_A77 J-Domain (Residues 1-77) Of The Escherichia Coli N- 2e-08
2ctw_A109 Solution Structure Of J-Domain From Mouse Dnaj Subf 2e-08
2och_A73 J-domain Of Dnj-12 From Caenorhabditis Elegans Leng 3e-08
2ctr_A88 Solution Structure Of J-Domain From Human Dnaj Subf 6e-08
2lgw_A99 Solution Structure Of The J Domain Of Hsj1a Length 7e-08
2ej7_A82 Solution Structure Of The Dnaj Domain Of The Human 2e-07
2yua_A99 Solution Structure Of The Dnaj Domain From Human Wi 1e-05
3apo_A 780 Crystal Structure Of Full-Length Erdj5 Length = 780 2e-05
3apq_A210 Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt 2e-05
2ctq_A112 Solution Structure Of J-Domain From Human Dnaj Subf 3e-05
2o37_A92 J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S 3e-05
2l6l_A155 Solution Structure Of Human J-Protein Co-Chaperone, 1e-04
2y4t_A450 Crystal Structure Of The Human Co-Chaperone P58(Ipk 2e-04
2y4u_A450 Crystal Structure Of Human P58(Ipk) In Space Group 2e-04
1wjz_A94 Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P 2e-04
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88 Back     alignment and structure 
Iteration: 1

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)
Query: 70  DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
           D Y+VLGV+++A+ ADIK+AY+ LAR++HPD +KD  A + F  I  AYE+LSNE  R  
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 130 YD 131
           YD
Sbjct: 78  YD 79
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 Back     alignment and structure
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79 Back     alignment and structure
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78 Back     alignment and structure
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73 Back     alignment and structure
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 Back     alignment and structure
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77 Back     alignment and structure
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103 Back     alignment and structure
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107 Back     alignment and structure
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71 Back     alignment and structure
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77 Back     alignment and structure
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109 Back     alignment and structure
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73 Back     alignment and structure
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88 Back     alignment and structure
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99 Back     alignment and structure
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82 Back     alignment and structure
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99 Back     alignment and structure
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780 Back     alignment and structure
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210 Back     alignment and structure
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112 Back     alignment and structure
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92 Back     alignment and structure
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155 Back     alignment and structure
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 Back     alignment and structure
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 Back     alignment and structure
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 6e-27
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 5e-26
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 3e-25
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 5e-25
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 1e-23
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 2e-23
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 1e-22
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 2e-22
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 2e-22
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 1e-21
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 1e-21
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 1e-21
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 3e-21
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 3e-21
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 3e-21
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 3e-21
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 5e-21
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 7e-21
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 1e-20
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 2e-20
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 3e-20
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 3e-20
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 5e-19
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 2e-18
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 1e-13
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 2e-13
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 3e-13
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 1e-12
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 4e-12
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 6e-10
2guz_A71 Mitochondrial import inner membrane translocase su 3e-08
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 4e-08
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 5e-07
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 2e-06
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
 Score =  106 bits (268), Expect = 6e-27
 Identities = 37/88 (42%), Positives = 50/88 (56%)

Query: 70  DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIK 129
           D+Y +LGV  +  L  IK AYR LARKYHPDVSK++ A   FK +  A+EVL +E  R +
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88

Query: 130 YDRALKFRTDSDRSRRGNRRYSSEFEDG 157
           YD+  + R D    R+      S  +  
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQD 116
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.84
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.83
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.83
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.82
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.82
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.81
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.81
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.8
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.8
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.8
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.79
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.78
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.78
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.78
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.78
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.77
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.74
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.72
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.72
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 99.68
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 99.67
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 99.65
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 99.64
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 99.64
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 99.63
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 99.63
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.61
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 99.6
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 99.59
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 99.58
2guz_A71 Mitochondrial import inner membrane translocase su 99.56
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 99.56
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 99.5
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 98.98
2guz_B65 Mitochondrial import inner membrane translocase su 98.82
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 87.74
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
Probab=99.84  E-value=5.9e-21  Score=145.85  Aligned_cols=71  Identities=44%  Similarity=0.584  Sum_probs=66.6

Q ss_pred             CCCchhhcCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhhHHHHHhhcccCC
Q 020536           68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRT  138 (325)
Q Consensus        68 ~~d~Y~vLgl~~~as~~eIK~aYr~la~~~HPDk~~~~~a~~~f~~I~~Ay~iL~dp~~R~~YD~~~~~~~  138 (325)
                      ..|||+||||+++++.++||+|||++++++|||+++.+.+.+.|+.|++||++|+||.+|..||+++..+.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            46999999999999999999999999999999999988899999999999999999999999999876443
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d1wjza_94 a.2.3.1 (A:) CSL-type zinc finger-containing prote 2e-15
d1hdja_77 a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 1e-14
d1xbla_75 a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain 2e-14
d1nz6a_98 a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T 5e-14
d1fpoa176 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma 8e-14
d1fafa_79 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 3e-13
d1iura_88 a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human 6e-12
d1gh6a_114 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 6e-12
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.5 bits (167), Expect = 2e-15
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 57  SSSAAAAAINGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVE------- 109
            SS  A     + D Y +LG   SA ++D+K+ Y+ L   YHPD                
Sbjct: 4   GSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQ 63

Query: 110 VFKTIRCAYEVLSNEVTRIKYDR 132
            F  I  A+++L NE T+ KYD 
Sbjct: 64  KFIEIDQAWKILGNEETKKKYDL 86
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.86
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.84
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.79
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.77
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.68
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.67
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.6
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.55
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.7e-22  Score=150.60  Aligned_cols=69  Identities=42%  Similarity=0.679  Sum_probs=64.3

Q ss_pred             CCCchhhcCCCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhhHHHHHhhccc
Q 020536           68 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKF  136 (325)
Q Consensus        68 ~~d~Y~vLgl~~~as~~eIK~aYr~la~~~HPDk~~-~~~a~~~f~~I~~Ay~iL~dp~~R~~YD~~~~~  136 (325)
                      .+|||+||||+++||.+|||+|||++++++|||+++ ++.++++|+.|++||+||+||.+|..||+++..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            479999999999999999999999999999999988 466788999999999999999999999998653
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure