Citrus Sinensis ID: 020541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDV
Secondary Structure (PSIPRED)
ccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccccccccccccccccHHHHHHHccccHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHEEEEEEEccHHHHHHHHHccccccccccccccccccccEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccHHHHHccc
Coil and Loop (DISEMBL)
mtiqssverkyrksprapllpqaqsqnhdnleaheagidgasfsgAVFNLSTTIVGAGIMALPATvkelglipGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLsgawlngvhhsgvteewfgqhwwttRFTLLLLTTLFVFlplisfrrvdslRYTSALSVGLAIVFVVITAGVAIVKtidgsismpcllpeiSKQASFWKLFTTFPVLVTAYIChhnihpienelkdptqiKSIVRTSITLCSTVYITTSFFGLllfgdrtlddvlanfdgdlgipyssllddv
Flexible Loop (DISEMBL)
mtiqssverkyrksprapllpqaqsQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPienelkdptQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFdgdlgipyssllddv
Low Complexity Region (SEG)
MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWttrftllllttlfvflplISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDV
Disordered region (IsUnstruct)
*************************************IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYS******
Disordered Region (DISOPRED)
*********************************************AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDV
Disordered Region (DISEMBL)
****************APLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDV
Disordered Region (DISPRO)
***************************************GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q5I012	1090	Putative sodium-coupled n	yes	no	0.756	0.225	0.272	6e-22
Q5RC98	1121	Putative sodium-coupled n	yes	no	0.793	0.230	0.259	9e-22
Q9HBR0	1119	Putative sodium-coupled n	yes	no	0.793	0.230	0.259	9e-22
Q28HE5	448	Probable sodium-coupled n	no	no	0.849	0.616	0.267	2e-21
Q3USY0	453	Putative sodium-coupled n	no	no	0.84	0.602	0.273	4e-20
P40074	448	Vacuolar amino acid trans	yes	no	0.772	0.560	0.300	7e-20
Q99624	504	Sodium-coupled neutral am	no	no	0.84	0.541	0.249	4e-19
Q6DEL1	465	Putative sodium-coupled n	no	no	0.876	0.612	0.284	2e-18
Q9JM15	485	Sodium-coupled neutral am	no	no	0.861	0.577	0.254	2e-18
Q8K2P7	485	Sodium-coupled neutral am	no	no	0.876	0.587	0.249	4e-18

>sp|Q5I012|S38AA_MOUSE Putative sodium-coupled neutral amino acid transporter 10 OS=Mus musculus GN=Slc38a10 PE=1 SV=2

 Score =  105 bits (261), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 139/275 (50%), Gaps = 29/275 (10%)

Query: 45  GAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATY 104
           G + N+  +IVG  ++ +P   K+ G++ G +++V   W+T  S   +++ +  SK  TY
Sbjct: 10  GLITNVVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTY 69

Query: 105 SGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG--AWLNGVHHSGVTEEWFG 162
           +G+   A+G AG+ L++  ++   LG  + + ++IGD+ S   A L G+    VT     
Sbjct: 70  AGLAFHAYGKAGKMLVETSMIGLMLGSCITFYVVIGDLGSNFFAPLLGLQ---VTR---- 122

Query: 163 QHWWTTRFTLLLLTTLFVFLPLISFRR--VDSLRYTSALSVGLAIVFVVITAGVAIVKTI 220
               T R  LL   +LF+ LPL S +R  + S++  SA+++    VF+ +   + +    
Sbjct: 123 ----TVRVFLLFAVSLFIVLPL-SLQRNMMASIQSFSAMALLFYTVFMFV---IVLSSLK 174

Query: 221 DGSISMPCLLPEISKQASF--WK-LFTTFPVLVTAYICHHNIHPIENELKDPT--QIKSI 275
            G  S   L     +Q S+  W+ +F   P+   ++ C   + P  + L +P+   + SI
Sbjct: 175 HGLFSGQWL-----RQVSYIRWEGVFRCVPIFGMSFACQSQVLPTYDSLDEPSVKTMSSI 229

Query: 276 VRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANF 310
             +S+ + +  Y+   FFG + F D T  +VL +F
Sbjct: 230 FASSLNVVTAFYVMVGFFGYVSFTDATTGNVLIHF 264

Putative sodium-dependent amino acid/proton antiporter.
Mus musculus (taxid: 10090)

>sp|Q5RC98|S38AA_PONAB Putative sodium-coupled neutral amino acid transporter 10 OS=Pongo abelii GN=SLC38A10 PE=2 SV=1

 Score =  104 bits (259), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 139/281 (49%), Gaps = 23/281 (8%)

Query: 40  GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS 99
            AS  G + N+  +IVG  ++ +P   K+ G++ G +++V   W+T  S   +++ +  S
Sbjct: 5   AASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLS 64

Query: 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG--AWLNGVHHSGVT 157
           K  TY+G+   A+G AG+ L++  ++   LG  + + ++IGD+ S   A L G    G  
Sbjct: 65  KRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQVGG-- 122

Query: 158 EEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR--VDSLRYTSALSVGLAIVFVVITAGVA 215
                    T R  LL   +L + LPL S +R  + S++  SA    +A++F  +   V 
Sbjct: 123 ---------TFRMFLLFAVSLCIVLPL-SLQRNMMASIQSFSA----MALLFYTVFMFVI 168

Query: 216 IVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT--QIK 273
           ++ ++   +     L  +S    +  +F   P+   ++ C   + P  + L +P+   + 
Sbjct: 169 VLSSLKHGLFSGQWLRRVS-YVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMS 227

Query: 274 SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL 314
           SI  +S+ + +T Y+   FFG + F + T  +VL +F  +L
Sbjct: 228 SIFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFPSNL 268

Putative sodium-dependent amino acid/proton antiporter.

Pongo abelii (taxid: 9601)

>sp|Q9HBR0|S38AA_HUMAN Putative sodium-coupled neutral amino acid transporter 10 OS=Homo sapiens GN=SLC38A10 PE=1 SV=2

 Score =  104 bits (259), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 139/281 (49%), Gaps = 23/281 (8%)

Query: 40  GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS 99
            AS  G + N+  +IVG  ++ +P   K+ G++ G +++V   W+T  S   +++ +  S
Sbjct: 5   AASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLS 64

Query: 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG--AWLNGVHHSGVT 157
           K  TY+G+   A+G AG+ L++  ++   LG  + + ++IGD+ S   A L G    G  
Sbjct: 65  KRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDLGSNFFARLFGFQVGG-- 122

Query: 158 EEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR--VDSLRYTSALSVGLAIVFVVITAGVA 215
                    T R  LL   +L + LPL S +R  + S++  SA    +A++F  +   V 
Sbjct: 123 ---------TFRMFLLFAVSLCIVLPL-SLQRNMMASIQSFSA----MALLFYTVFMFVI 168

Query: 216 IVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT--QIK 273
           ++ ++   +     L  +S    +  +F   P+   ++ C   + P  + L +P+   + 
Sbjct: 169 VLSSLKHGLFSGQWLRRVS-YVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMS 227

Query: 274 SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL 314
           SI  +S+ + +T Y+   FFG + F + T  +VL +F  +L
Sbjct: 228 SIFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFPSNL 268

Putative sodium-dependent amino acid/proton antiporter.

Homo sapiens (taxid: 9606)

>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 57/333 (17%)

Query: 22  QAQSQNHDNLEAHE--AGID----------------GASFSGAVFNLSTTIVGAGIMALP 63
           QA   + + L+ H+  AG D                G SF  AVFNL   I+G+GI+ L 
Sbjct: 2   QASDSSINTLDGHQVSAGRDESTPLLANSPQRRSSGGTSFGFAVFNLMNAIMGSGILGLS 61

Query: 64  ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVC 123
             + + G++    ++++V  L   SI +++R    +   +Y  +   AFG +G+ L+   
Sbjct: 62  YAMAKTGILGFSALLLIVALLAAYSIHLLLRMCLLTAVTSYEDLGLYAFGRSGKVLVACT 121

Query: 124 IVVNNLGMLVVYMIIIGDVLSGA---WLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFV 180
           I++ N+G +  Y+ II   L  A   +L G           G+ W+    TLL++T++ +
Sbjct: 122 ILIQNVGAMSSYLFIIKSELPAAIASFLPGAQ---------GEPWYLDGRTLLIITSVCI 172

Query: 181 FLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFW 240
            LPL    ++  L YTS+LS      F+V  A V ++K  +    +PC LP ++   +F 
Sbjct: 173 VLPLALLPKIGFLGYTSSLS----FFFMVYFAVVIVIKKWN----IPCPLPPLNHTVTFL 224

Query: 241 ----------KLFT-------TFPVLVTAYICHHNIHPIENELKDP--TQIKSIVRTSIT 281
                     KLF          P +  +++CH ++ PI  ELK P  ++++++    I 
Sbjct: 225 QAPNISECKPKLFDFSKESAFALPTMAFSFLCHTSVLPIYCELKSPSKSKMQNVANVGIA 284

Query: 282 LCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL 314
           L   +Y  ++ FG L F D    ++L  +   L
Sbjct: 285 LSFLIYYISALFGYLTFYDNVKSELLQGYSKYL 317

Probable sodium-dependent amino acid/proton antiporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q3USY0|S38AB_MOUSE Putative sodium-coupled neutral amino acid transporter 11 OS=Mus musculus GN=Slc38a11 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 31/304 (10%)

Query: 17  APLLPQAQSQNHDNL-EAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGL 75
            PL  +  S + ++L   HE G   +S S AVFN+  +++G+GI+ LP ++K+ G   G+
Sbjct: 10  GPLQRETDSSDRESLISGHEHG-GKSSQSAAVFNVVNSVIGSGIIGLPYSMKQAGFPLGI 68

Query: 76  IMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVY 135
           +++ LV ++T+ S+ ++++    S + +Y  +V   FG  G  LL     +     ++ Y
Sbjct: 69  LLLFLVSYITDFSLVLLIKGGALSGTDSYQSLVNKTFGFPGYLLLSTLQFMYPFIAMISY 128

Query: 136 MIIIGDVLSGAW--LNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193
            II GD LS  +  L GV   G         W+ +R  +++++T+   LPL  +R +  L
Sbjct: 129 NIITGDTLSKVFQRLPGVDPGG---------WFISRHFIIVVSTVTCTLPLSLYRDIAKL 179

Query: 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFW-----KLFTTFPV 248
              S +S  L  V +    G+ + + I        L P I K  + W            V
Sbjct: 180 GKISFISTILTTVIL----GIVMTRAIS-------LGPNIPKTDNAWVFAKPNAIQAIGV 228

Query: 249 LVTAYICHHNIHPIENELKDPTQIK--SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDV 306
           +  A+ICHHN   +   L++PT  K   I+ TSI +   + +  +  G   F   T  D+
Sbjct: 229 MSFAFICHHNCFLVYGSLEEPTVAKWRRIIHTSILVSVFICVLFATCGYFTFTGFTQGDL 288

Query: 307 LANF 310
             N+
Sbjct: 289 FENY 292

Putative sodium-dependent amino acid/proton antiporter.

Mus musculus (taxid: 10090)

>sp|P40074|AVT6_YEAST Vacuolar amino acid transporter 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT6 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 125/276 (45%), Gaps = 25/276 (9%)

Query: 41  ASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR--A 98
           AS    V  L  T  GAGI+A+P   K  GLIPG+IMIVL G     S+ +  R ++   
Sbjct: 3   ASIRSGVLTLLHTACGAGILAMPYAFKPFGLIPGVIMIVLCGACAMQSLFIQARVAKYVP 62

Query: 99  SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTE 158
              A++S +        G  +  + I +   G+ V YMI++GD++            +  
Sbjct: 63  QGRASFSALTRLINPNLG-IVFDLAIAIKCFGVGVSYMIVVGDLM----------PQIMS 111

Query: 159 EWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL---SVGLAIVFVVI--TAG 213
            W    W   R   + L  LF   PL   ++++SLRY S +   SV    V V++   A 
Sbjct: 112 VWTRNAWLLNRNVQISLIMLFFVAPLSFLKKLNSLRYASMVAISSVAYLCVLVLLHYVAP 171

Query: 214 VAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP--TQ 271
              +  + G IS   LLP    Q+    +  T P+ V AY CHHN+  I NE +      
Sbjct: 172 SDEILRLKGRISY--LLPP---QSHDLNVLNTLPIFVFAYTCHHNMFSIINEQRSSRFEH 226

Query: 272 IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVL 307
           +  I   +I+L   +YI     G L FGD  + +++
Sbjct: 227 VMKIPLIAISLALILYIAIGCAGYLTFGDNIIGNII 262

Involved in amino acid efflux from the vacuole to the cytoplasm. Capable of transporting aspartate and glutamate. Requires ATP for function.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q99624|S38A3_HUMAN Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 140/321 (43%), Gaps = 48/321 (14%)

Query: 26  QNHDNLEAHEAGIDGA-SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWL 84
           Q   + E H    +G  SF  +VFNLS  I+G+GI+ L   +   G+I  L ++  V  L
Sbjct: 50  QKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALL 109

Query: 85  TESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS 144
           +  SI ++++ S       Y  +   AFG  G+    + I + N+G +  Y+ II   L 
Sbjct: 110 SSYSIHLLLKSSGVVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELP 169

Query: 145 GAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLA 204
                 ++    T +W+    +     L++L ++ + LPL   R++  L Y+S  S+   
Sbjct: 170 LVIQTFLNLEEKTSDWYMNGNY-----LVILVSVTIILPLALMRQLGYLGYSSGFSLSCM 224

Query: 205 IVFVVITAGVAIVKTIDGSISMPCLLP-------------EISKQA-------------- 237
           + F        ++  I     +PC LP             EI K+               
Sbjct: 225 VFF--------LIAVIYKKFHVPCPLPPNFNNTTGNFSHVEIVKEKVQLQVEPEASAFCT 276

Query: 238 -SFWKLFT----TFPVLVTAYICHHNIHPIENELKDPT--QIKSIVRTSITLCSTVYITT 290
            S++ L +    T P++  A++CH  + PI  ELKDP+  +++ I   SI +   +Y   
Sbjct: 277 PSYFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKKKMQHISNLSIAVMYIMYFLA 336

Query: 291 SFFGLLLFGDRTLDDVLANFD 311
           + FG L F +    ++L  + 
Sbjct: 337 ALFGYLTFYNGVESELLHTYS 357

Sodium-dependent amino acid/proton antiporter. Mediates electrogenic cotransport of glutamine and sodium ions in exchange for protons. Also recognizes histidine, asparagine and alanine. May mediate amino acid transport in either direction under physiological conditions. May play a role in nitrogen metabolism and synaptic transmission.

Homo sapiens (taxid: 9606)

>sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 21/306 (6%)

Query: 16  RAPLLPQAQSQNHDNLEAHEAGID---GASFSGAVFNLSTTIVGAGIMALPATVKELG-L 71
           RA LL   QS + D+++      D   G S  GAVF +    +GAG++  PA     G +
Sbjct: 24  RAWLL---QSPSVDSVQPPSQSDDSRGGTSSLGAVFIVVNAALGAGLLNFPAAFNMAGGI 80

Query: 72  IPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGM 131
             G+ + + +     + + ++   S+ S  +TY  VV    G A   + ++ I V   G 
Sbjct: 81  TAGVTLQMCMMAFIITGLVILAYCSQVSNESTYQEVVRAVCGKALGVICELAIAVYTFGT 140

Query: 132 LVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191
            + ++IIIGD L    +  +++   +E+    HW+T R   + LT++ + LPL   + + 
Sbjct: 141 CIAFLIIIGDQLDKL-IGAINNE--SEKEISLHWYTDRKFTITLTSVLIILPLSIPKEIG 197

Query: 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM-PCLLPEISKQASFWKLFTTFPVLV 250
             +Y S LSV +   +V I   + IVK I  S  + P ++P   + AS+  +F   P + 
Sbjct: 198 FQKYASTLSV-IGTWYVTI---IVIVKYIWPSKDVSPGIIP--VRPASWTDVFNAMPTIC 251

Query: 251 TAYICHHNIHPIENELKDPTQIK---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVL 307
             + CH +  P+ N +K P +I+    +V  S+ +C  VY  T   G L FG     DVL
Sbjct: 252 FGFQCHVSSVPVFNSMKKP-EIRPWWGVVTISMIICLFVYTGTGVCGFLSFGSSVSQDVL 310

Query: 308 ANFDGD 313
            ++  D
Sbjct: 311 MSYPSD 316

Putative sodium-dependent amino acid/proton antiporter.

Danio rerio (taxid: 7955)

>sp|Q9JM15|S38A1_RAT Sodium-coupled neutral amino acid transporter 1 OS=Rattus norvegicus GN=Slc38a1 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 147/314 (46%), Gaps = 34/314 (10%)

Query: 24  QSQNHDNLEAHEAG--IDGASFSG-AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVL 80
           +S  + +LE  +    I G +  G +VFNLS  I+G+GI+ L   +   G++  LI++  
Sbjct: 51  RSLTNSHLEKRKCDEYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLILLTS 110

Query: 81  VGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIG 140
           V  L+  SI++++  S+ +    Y  +    FG  G+ ++     + N G ++ Y+ I+ 
Sbjct: 111 VTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIFGATSLQNTGAMLSYLFIVK 170

Query: 141 DVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALS 200
           + L  A       S + EE     W+     L+++ T  + LPL   + +  L YTS  S
Sbjct: 171 NELPSAI-----KSLMGEEETFSAWYVDGRVLVVMVTFGIILPLCLLKNLGYLGYTSGFS 225

Query: 201 VGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS-------------KQASF-WKLFTTF 246
           +   + F+++         I     +PC+  E +             K  +F  K     
Sbjct: 226 LSCMVFFLIV--------VIYKKFQIPCMNGEQNSTVSANVTDACTPKYVTFNSKTVYAL 277

Query: 247 PVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCS--TVYITTSFFGLLLFGDRTLD 304
           P +  A++CH ++ PI +ELKD +Q K  + ++I+  +   +Y  T+ FG L F ++   
Sbjct: 278 PTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFLTAIFGYLTFYEKVQS 337

Query: 305 DVLANFD--GDLGI 316
           D+L  +   GD+ I
Sbjct: 338 DLLHKYQSTGDILI 351

Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA.

Rattus norvegicus (taxid: 10116)

>sp|Q8K2P7|S38A1_MOUSE Sodium-coupled neutral amino acid transporter 1 OS=Mus musculus GN=Slc38a1 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 147/309 (47%), Gaps = 24/309 (7%)

Query: 24  QSQNHDNLEAHEAG--IDGASFSG-AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVL 80
           +S  + +LE  +    I G +  G +VFNLS  I+G+GI+ L   +   G++  LI++  
Sbjct: 51  RSLTNSHLEKRKCDEYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLILLTS 110

Query: 81  VGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIG 140
           V  L+  SI++++  S+ +    Y  +    FG  G+ ++     + N G ++ Y+ I+ 
Sbjct: 111 VTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIFGATSLQNTGAMLSYLFIVK 170

Query: 141 DVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALS 200
           + L  A       S + EE     W+     L+++ T  + LPL   + +  L YTS  S
Sbjct: 171 NELPSAI-----KSLMGEEDAFSAWYVDGRVLVVMVTFGIILPLCLLKNLGYLGYTSGFS 225

Query: 201 VGLAIVFVVI---------TAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVT 251
           +   + F+++            V    T+  +++  C    ++  +   K     P +  
Sbjct: 226 LSCMMFFLIVVIYKKFQTPCMSVEQNSTVSANVTDACTPKYVTFNS---KTVYALPTIAF 282

Query: 252 AYICHHNIHPIENELKDPTQIKSIVRTSITLCS--TVYITTSFFGLLLFGDRTLDDVLAN 309
           A++CH ++ PI +ELKD +Q K  + ++I+  +   +Y  T+ FG L F ++   D+L  
Sbjct: 283 AFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFLTAIFGYLTFYEKVQSDLLHK 342

Query: 310 FD--GDLGI 316
           +   GD+ I
Sbjct: 343 YQSTGDILI 351

Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
449447087	453	PREDICTED: sodium-coupled neutral amino	0.987	0.708	0.76	1e-142
255537952	456	amino acid transporter, putative [Ricinu	0.987	0.703	0.760	1e-138
224067156	414	amino acid transporter [Populus trichoca	0.883	0.693	0.794	1e-132
225458918	449	PREDICTED: sodium-coupled neutral amino	0.987	0.714	0.769	1e-131
356554046	453	PREDICTED: probable sodium-coupled neutr	0.950	0.682	0.704	1e-123
147818199	468	hypothetical protein VITISV_034136 [Viti	0.987	0.685	0.712	1e-122
224127528	460	amino acid transporter [Populus trichoca	0.969	0.684	0.631	1e-115
255586905	461	amino acid transporter, putative [Ricinu	0.981	0.691	0.634	1e-115
290767967	454	putative Na+ dependent neutral amino aci	0.944	0.676	0.644	1e-111
242092744	459	hypothetical protein SORBIDRAFT_10g01029	0.938	0.664	0.648	1e-111

>gi|449447087|ref|XP_004141301.1| PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Cucumis sativus] gi|449509262|ref|XP_004163538.1| PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Cucumis sativus]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/325 (76%), Positives = 282/325 (86%), Gaps = 4/325 (1%)

Query: 1   MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIM 60
           MT+  S +RKYR+SP+  LLP+     +D+ E  EAG+DGASFSGAVFNLS+TIVGAGIM
Sbjct: 1   MTMLVSADRKYRRSPKKLLLPE----KYDHQEPVEAGLDGASFSGAVFNLSSTIVGAGIM 56

Query: 61  ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALL 120
           ALPA VK+LGLIPGLI+I+L   LTE SID I++FSRASKS TY+G V ++FG AGR LL
Sbjct: 57  ALPAVVKQLGLIPGLILIMLGSTLTELSIDFILKFSRASKSVTYAGAVGESFGNAGRTLL 116

Query: 121 QVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFV 180
           QVCIVVNNLGMLVVYMIIIGDVLSG   N +HH GV EEWFGQHWWT+R +L+LLTTLF+
Sbjct: 117 QVCIVVNNLGMLVVYMIIIGDVLSGTSANNIHHKGVMEEWFGQHWWTSRLSLMLLTTLFI 176

Query: 181 FLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFW 240
           F PLISF+RVDSLRYTSALSV LAIVFV ITAGVAI K +DGSI MP L+P++  QASFW
Sbjct: 177 FAPLISFKRVDSLRYTSALSVALAIVFVAITAGVAIAKLMDGSIVMPRLMPKVVDQASFW 236

Query: 241 KLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGD 300
           +LFTT PVLVTAYICHHN+HPIENELKDPTQ+KSIVRTS+T+CSTVYI TSFFG LLFGD
Sbjct: 237 QLFTTVPVLVTAYICHHNVHPIENELKDPTQMKSIVRTSLTICSTVYIATSFFGFLLFGD 296

Query: 301 RTLDDVLANFDGDLGIPYSSLLDDV 325
           +TLDDVLANFDGDLG+P+SSLLDDV
Sbjct: 297 QTLDDVLANFDGDLGLPFSSLLDDV 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537952|ref|XP_002510041.1| amino acid transporter, putative [Ricinus communis] gi|223550742|gb|EEF52228.1| amino acid transporter, putative [Ricinus communis]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/326 (76%), Positives = 284/326 (87%), Gaps = 5/326 (1%)

Query: 1   MTIQS-SVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGI 59
           MT+ S S ERK+R+SPR PLLPQ     HD+ E  E G +GASFSGAVFNLSTTIVGAGI
Sbjct: 1   MTVVSLSSERKFRRSPRNPLLPQ----KHDDYEPLEVGFNGASFSGAVFNLSTTIVGAGI 56

Query: 60  MALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRAL 119
           MALPATVK+LGLIPGL+MI+L   LTESS+DMI+RFS+A+KS TYSGVV+DAFGG GR L
Sbjct: 57  MALPATVKQLGLIPGLMMIILGAMLTESSVDMILRFSKAAKSTTYSGVVSDAFGGGGRTL 116

Query: 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLF 179
           LQ+ I+VNNLGML+VYMIIIGDVL+G W +GV HSGV EEWFG+HWWT+R  LLLLTTL 
Sbjct: 117 LQLGIIVNNLGMLIVYMIIIGDVLAGTWSDGVRHSGVMEEWFGRHWWTSRSFLLLLTTLL 176

Query: 180 VFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASF 239
           VF PLISF+RVDSLRYTSALSVGLAIVFV ITAGV  +K ++G I MP L+PE++ QASF
Sbjct: 177 VFAPLISFKRVDSLRYTSALSVGLAIVFVAITAGVVAIKLMEGGIGMPRLMPELNNQASF 236

Query: 240 WKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFG 299
           WKLFTT P+LVTAYICHHN+HPIENEL+D  Q+KSIVRTS+TLCS+VY+ TS FG+LLFG
Sbjct: 237 WKLFTTVPILVTAYICHHNVHPIENELRDTAQMKSIVRTSLTLCSSVYVATSLFGILLFG 296

Query: 300 DRTLDDVLANFDGDLGIPYSSLLDDV 325
           D+TLDDVLANFDGDLGIPYSSLLDDV
Sbjct: 297 DQTLDDVLANFDGDLGIPYSSLLDDV 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067156|ref|XP_002302383.1| amino acid transporter [Populus trichocarpa] gi|222844109|gb|EEE81656.1| amino acid transporter [Populus trichocarpa]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/287 (79%), Positives = 261/287 (90%)

Query: 39  DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA 98
           +GASFSGAVFNLSTTIVGAGIMALP+TVK+LGLIPG+IMI++   LTE+SIDMI+RF RA
Sbjct: 2   NGASFSGAVFNLSTTIVGAGIMALPSTVKQLGLIPGIIMILMGAALTETSIDMILRFGRA 61

Query: 99  SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTE 158
           SK+ATYSGVVAD+FGG  R LLQ+CIV+NNLGML+VYMIIIGDVLSG W +GV HSGV E
Sbjct: 62  SKTATYSGVVADSFGGFWRTLLQICIVINNLGMLIVYMIIIGDVLSGTWSDGVRHSGVME 121

Query: 159 EWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVK 218
           EWF +HWWTTR +LLL TT+FVF PLISF+RVDSLRYTSALSVGLA+VFV ITAGVA+VK
Sbjct: 122 EWFDEHWWTTRCSLLLFTTVFVFAPLISFKRVDSLRYTSALSVGLAVVFVAITAGVAVVK 181

Query: 219 TIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRT 278
            I+G+I MP L+PE+  Q SFWKLFTT P++VTAYICHHN+HPIENELKD T +KSIVRT
Sbjct: 182 LIEGTIGMPRLMPEVVDQTSFWKLFTTVPIIVTAYICHHNVHPIENELKDHTHMKSIVRT 241

Query: 279 SITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDV 325
           S+TLCS+VYI TSFFG+LLFGD+TLDDVLANFDGDLG+PYSSLLDDV
Sbjct: 242 SLTLCSSVYIATSFFGVLLFGDKTLDDVLANFDGDLGVPYSSLLDDV 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458918|ref|XP_002285488.1| PREDICTED: sodium-coupled neutral amino acid transporter 3 [Vitis vinifera]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/325 (76%), Positives = 282/325 (86%), Gaps = 4/325 (1%)

Query: 1   MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIM 60
           MTI +S +RK R+SPRAPLLPQ     +D+ ++ E G  GASFSGAVFNLSTT+VGAGIM
Sbjct: 1   MTILASADRKCRRSPRAPLLPQ----KYDDADSFEVGFSGASFSGAVFNLSTTVVGAGIM 56

Query: 61  ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALL 120
           ALPAT+K+LG+IPGLIMI+L   LTESSI+MI+RFSRASKS++YSGVV DAFGG GR +L
Sbjct: 57  ALPATIKQLGMIPGLIMILLGALLTESSIEMILRFSRASKSSSYSGVVGDAFGGVGRTVL 116

Query: 121 QVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFV 180
           Q+C+VVNN+GML+VYMIIIGDVLSG WL+ VHH GV EEWFGQHWW+TR  LLLLTTL V
Sbjct: 117 QICVVVNNMGMLIVYMIIIGDVLSGTWLDKVHHLGVVEEWFGQHWWSTRSFLLLLTTLLV 176

Query: 181 FLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFW 240
             PLISF+RVDSLRYTSALSV LA+VFV ITAGVAIVK ++GSI MP LLPEI  QASFW
Sbjct: 177 LTPLISFKRVDSLRYTSALSVALAVVFVAITAGVAIVKLVEGSIGMPRLLPEIVDQASFW 236

Query: 241 KLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGD 300
           KLFTT PVLVTAYICHHNIHPIE EL D TQ+K IVRTS+ LC++VYI TSFFG LLFGD
Sbjct: 237 KLFTTVPVLVTAYICHHNIHPIEKELHDQTQMKPIVRTSLMLCTSVYIATSFFGFLLFGD 296

Query: 301 RTLDDVLANFDGDLGIPYSSLLDDV 325
           RTLDDVLANFDGDLGIPYSSLL+DV
Sbjct: 297 RTLDDVLANFDGDLGIPYSSLLNDV 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554046|ref|XP_003545360.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/318 (70%), Positives = 261/318 (82%), Gaps = 9/318 (2%)

Query: 8   ERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVK 67
           +RK R+SP+           H NL +  A   G+SFSGAVFNLSTTIVGAGIMALPA VK
Sbjct: 7   DRKSRRSPKT---------YHQNLISDAAIQCGSSFSGAVFNLSTTIVGAGIMALPAAVK 57

Query: 68  ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVN 127
           +LGLIPGL+MI+L   LTESSI M++RF+RASKS+TYSGVV DAFGG GR LL +CI+VN
Sbjct: 58  QLGLIPGLVMIILCAMLTESSISMLVRFTRASKSSTYSGVVRDAFGGLGRNLLLLCIIVN 117

Query: 128 NLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISF 187
           N+GMLVVYM+IIGDV SG+W  GVH+SGV EEWFGQ WW+TR  LL LT + V +PL SF
Sbjct: 118 NVGMLVVYMVIIGDVFSGSWSEGVHYSGVVEEWFGQRWWSTRPVLLFLTAILVLVPLASF 177

Query: 188 RRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFP 247
           RRVDSLRYTSALSVGLAIVFVVITAG+AIVK IDGSI MP L+P+ +   SFWKLFTT P
Sbjct: 178 RRVDSLRYTSALSVGLAIVFVVITAGIAIVKFIDGSIVMPRLMPKFTGLESFWKLFTTIP 237

Query: 248 VLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVL 307
           +LV+AYICHHN+HPIENEL+DP+Q+K+IVRTS+ LCS+VYI TS FG  LFGD TLDD+L
Sbjct: 238 ILVSAYICHHNVHPIENELQDPSQMKAIVRTSLLLCSSVYIATSLFGFFLFGDNTLDDIL 297

Query: 308 ANFDGDLGIPYSSLLDDV 325
           ANFDGDLG+PY S L D+
Sbjct: 298 ANFDGDLGVPYGSFLTDI 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818199|emb|CAN60404.1| hypothetical protein VITISV_034136 [Vitis vinifera]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/344 (71%), Positives = 278/344 (80%), Gaps = 23/344 (6%)

Query: 1   MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIM 60
           MTI +S +RK R+SPRAPLLPQ     +D+ ++ E G  GASFSGAVFNLSTT+VGAGIM
Sbjct: 1   MTILASADRKCRRSPRAPLLPQ----KYDDADSFEVGFSGASFSGAVFNLSTTVVGAGIM 56

Query: 61  ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADA-FGGAGRAL 119
           ALPAT+K+LG+IPGLIMI+L   LTESSI+MI+RFSRASKS++YS   +   FGG GR +
Sbjct: 57  ALPATIKQLGMIPGLIMILLGALLTESSIEMILRFSRASKSSSYSRCCSVMLFGGVGRTV 116

Query: 120 LQVCIVVNNLGMLVVYMIIIG------DVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLL 173
           LQ+C+VVNN+GML+VYMIIIG      DVLSG WL+ VHH GV EEWFGQHWW+TR  LL
Sbjct: 117 LQICVVVNNMGMLIVYMIIIGTHRLTCDVLSGTWLDKVHHLGVVEEWFGQHWWSTRSFLL 176

Query: 174 LLTTLFVFLPLISFRRV------------DSLRYTSALSVGLAIVFVVITAGVAIVKTID 221
           LLTTL V  PLISF+RV            DSLRYTSALSV LA+VFV ITAGVAIVK ++
Sbjct: 177 LLTTLLVLTPLISFKRVAVKIVTNFYVVLDSLRYTSALSVALAVVFVAITAGVAIVKLVE 236

Query: 222 GSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSIT 281
           GSI MP LLPEI  QASFWKLFTT PVLVTAYICHHNIHPIE EL D TQ+K IVRTS+ 
Sbjct: 237 GSIGMPRLLPEIVDQASFWKLFTTVPVLVTAYICHHNIHPIEKELHDQTQMKPIVRTSLM 296

Query: 282 LCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDV 325
           LC++VYI TSFFG LLFGDRTLDDVLANFDGDLGIPYSSLL+DV
Sbjct: 297 LCTSVYIATSFFGFLLFGDRTLDDVLANFDGDLGIPYSSLLNDV 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127528|ref|XP_002329300.1| amino acid transporter [Populus trichocarpa] gi|222870754|gb|EEF07885.1| amino acid transporter [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/334 (63%), Positives = 260/334 (77%), Gaps = 19/334 (5%)

Query: 1   MTIQSSVERKYRKSPR-------APLLPQAQSQNHDNLEAHEAGID---GASFSGAVFNL 50
           MTI +   +K RKS R       APLLP+ Q          +AG D   GASF+GAVFNL
Sbjct: 1   MTIGNIPPKKERKSRRTKPVDENAPLLPKRQ---------EDAGFDEFNGASFTGAVFNL 51

Query: 51  STTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVAD 110
           STTIVGAGIMALPAT+K LGLI G+ MI+ + +LTE+SI++++RFS+A KSA+Y G++ D
Sbjct: 52  STTIVGAGIMALPATMKVLGLILGVAMIIFMAFLTEASIELLLRFSKAGKSASYGGLMGD 111

Query: 111 AFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRF 170
           AFG  GR LLQ  ++VNN+G+L+VYMIIIGDVLSG   +G HH+GV E WFG+HWW  R 
Sbjct: 112 AFGKTGRILLQAAVLVNNIGVLIVYMIIIGDVLSGTSSSGAHHTGVLEGWFGEHWWNARA 171

Query: 171 TLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLL 230
            +LL+TTLFVF PL  F+R+DSL YTSALSV LA+VF+VIT G+ IVK I+GSI+MP L+
Sbjct: 172 FVLLITTLFVFSPLACFKRIDSLSYTSALSVALAVVFLVITVGITIVKLINGSIAMPRLM 231

Query: 231 PEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITT 290
           P+++   SFWKLFTT PVLVTA+ICH+N+H I+NEL+D  QIK +VRT++ LCSTVYI T
Sbjct: 232 PDVTDMTSFWKLFTTVPVLVTAFICHYNVHSIDNELEDSAQIKPVVRTALALCSTVYIMT 291

Query: 291 SFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDD 324
           S FG LLFGD TLDDVLANFD DLGIPYSSLL+D
Sbjct: 292 SIFGFLLFGDATLDDVLANFDMDLGIPYSSLLND 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586905|ref|XP_002534057.1| amino acid transporter, putative [Ricinus communis] gi|223525920|gb|EEF28328.1| amino acid transporter, putative [Ricinus communis]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 257/331 (77%), Gaps = 12/331 (3%)

Query: 1   MTIQSSVERKYRKS-------PRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTT 53
           MTI+S   +K RKS        +APLLP+ Q + H   +      DGASF+GAVFNLSTT
Sbjct: 1   MTIESHAPKKERKSRKTKPVNEKAPLLPKRQ-EEHAGFDE----FDGASFTGAVFNLSTT 55

Query: 54  IVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG 113
           IVGAGIMALPAT+K LGL  G+ +I+ + +LTE+SI++++RFSRA K A+Y G++ DAFG
Sbjct: 56  IVGAGIMALPATMKVLGLGLGVALIIFMAFLTEASIELLLRFSRAGKCASYGGLMGDAFG 115

Query: 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLL 173
             GR +LQV ++VNN+G+L+VYMIIIGDVLSG    G HHSGV E WFG+HWWT R  +L
Sbjct: 116 KYGRIMLQVAVLVNNIGVLIVYMIIIGDVLSGTSSGGAHHSGVLEGWFGEHWWTARTLVL 175

Query: 174 LLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEI 233
           L+TTL VF PL  F+R+DSL +TSALSV LA+VF+VIT G+ IVK I+GSI MP +LP +
Sbjct: 176 LVTTLAVFSPLACFKRIDSLSFTSALSVALAVVFLVITVGITIVKLINGSIMMPRMLPNV 235

Query: 234 SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFF 293
           +   SFWKLFT  PVLVTAYICH+N+H I+NEL+D TQIK +VRTS+ LCSTVYI TS F
Sbjct: 236 TDLTSFWKLFTVVPVLVTAYICHYNVHSIDNELEDSTQIKPVVRTSLALCSTVYIMTSIF 295

Query: 294 GLLLFGDRTLDDVLANFDGDLGIPYSSLLDD 324
           G LLFGD TLDDVLANFD DLGIPYSSLL+D
Sbjct: 296 GFLLFGDGTLDDVLANFDADLGIPYSSLLND 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290767967|gb|ADD60676.1| putative Na+ dependent neutral amino acid transporter [Oryza granulata]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/307 (64%), Positives = 241/307 (78%)

Query: 18  PLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIM 77
           PLLP  +  +     A     +GASF+GAVFNLSTTIVGAGIMALPAT+K LGL+PGLIM
Sbjct: 12  PLLPTKREDDGAAAAAFHREFNGASFAGAVFNLSTTIVGAGIMALPATMKVLGLVPGLIM 71

Query: 78  IVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMI 137
           IVL   LT++SI++++RFSR   + +Y  ++ DAFG  GR LLQVC+VVNN+G+++VYMI
Sbjct: 72  IVLAALLTDASIELLVRFSRVVGAPSYGAIMGDAFGWWGRRLLQVCVVVNNIGVMIVYMI 131

Query: 138 IIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTS 197
           IIGDVLSG    G HH GV E WFG +WW  RF +LL+TTL VF PL S +RVDSL YTS
Sbjct: 132 IIGDVLSGTSSGGEHHYGVLEGWFGTYWWNGRFFVLLVTTLVVFTPLASLKRVDSLSYTS 191

Query: 198 ALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHH 257
           A+SV LA+VFV+ITAG++IVK + G I MP L P++   AS W+LFT  PVLVTAY+CH+
Sbjct: 192 AISVALAVVFVIITAGISIVKLVTGQIPMPKLFPDVPDLASVWELFTAVPVLVTAYVCHY 251

Query: 258 NIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIP 317
           N+HPI NELKDP+QIK IV TS+ LCSTVYITTSFFG LLFG+ TL DVLANFD +LGIP
Sbjct: 252 NVHPIHNELKDPSQIKPIVHTSLILCSTVYITTSFFGYLLFGESTLSDVLANFDSNLGIP 311

Query: 318 YSSLLDD 324
           YSS+L+D
Sbjct: 312 YSSVLND 318

Source: Oryza granulata

Species: Oryza granulata

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242092744|ref|XP_002436862.1| hypothetical protein SORBIDRAFT_10g010290 [Sorghum bicolor] gi|241915085|gb|EER88229.1| hypothetical protein SORBIDRAFT_10g010290 [Sorghum bicolor]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/310 (64%), Positives = 244/310 (78%), Gaps = 5/310 (1%)

Query: 18  PLLPQAQSQNHDNLEA---HEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPG 74
           PLLP  +  + D+  A   HE   DGASF+GAVFNLSTTIVGAGIMALPAT+K LGL+PG
Sbjct: 16  PLLPTKRDGDEDDAGASAFHE--FDGASFAGAVFNLSTTIVGAGIMALPATMKVLGLVPG 73

Query: 75  LIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVV 134
           L+MIVL   LT++SI++++RFSRA  + +YS  + DAFG  GR LLQVC+V+NN+G++VV
Sbjct: 74  LVMIVLAALLTDASIELLVRFSRAVGARSYSAAMGDAFGWWGRRLLQVCVVINNVGVMVV 133

Query: 135 YMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194
           YMIIIGDVLSG    G HH GV E WFG HWW  RF +LL+TTL VF PL  F+R+DSL 
Sbjct: 134 YMIIIGDVLSGTTSGGEHHYGVLEGWFGIHWWNGRFFVLLVTTLCVFTPLACFKRIDSLS 193

Query: 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYI 254
           YTS +SV LA+VFV+ITAG+AI+K I G I MP L P +   AS W+LFT  PVLVTAY+
Sbjct: 194 YTSTISVALAVVFVIITAGIAIIKLIGGQIPMPKLFPTLPDLASVWELFTAVPVLVTAYV 253

Query: 255 CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL 314
           CH+N+HPI NELKD +QIK IV TS+TLCST+YITTSFFG LLFG+ TL DVL+NFD +L
Sbjct: 254 CHYNVHPIHNELKDSSQIKPIVHTSLTLCSTIYITTSFFGYLLFGESTLSDVLSNFDSNL 313

Query: 315 GIPYSSLLDD 324
           GIPYSS+L+D
Sbjct: 314 GIPYSSVLND 323

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2102926	460	AT3G30390 [Arabidopsis thalian	0.932	0.658	0.568	4.8e-94
TAIR|locus:2166615	456	AT5G38820 "AT5G38820" [Arabido	0.932	0.664	0.551	2.5e-90
TAIR|locus:2078381	435	AT3G56200 [Arabidopsis thalian	0.944	0.705	0.410	1.4e-64
TAIR|locus:2063068	440	AT2G40420 "AT2G40420" [Arabido	0.932	0.688	0.430	1.8e-64
TAIR|locus:2198968	489	AT1G80510 [Arabidopsis thalian	0.861	0.572	0.430	1.3e-59
UNIPROTKB|I3LB54	1053	SLC38A10 "Uncharacterized prot	0.8	0.246	0.238	2.8e-19
ZFIN|ZDB-GENE-050417-122	448	slc38a11 "solute carrier famil	0.827	0.600	0.257	9.8e-19
UNIPROTKB|F1SRV0	456	SLC38A6 "Uncharacterized prote	0.812	0.578	0.264	2.2e-18
MGI|MGI:2443383	453	Slc38a11 "solute carrier famil	0.843	0.604	0.262	3.6e-18
UNIPROTKB|Q9HBR0	1119	SLC38A10 "Putative sodium-coup	0.8	0.232	0.227	7.6e-18

TAIR|locus:2102926 AT3G30390 [Arabidopsis thaliana (taxid:3702)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 175/308 (56%), Positives = 235/308 (76%)

Query:    17 APLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLI 76
             APLLP+     H +  AH+   +GASFSGAVFNL+TTI+GAGIMALPAT+K LGL  G+ 
Sbjct:    24 APLLPEC----HGDEVAHDE-FNGASFSGAVFNLATTIIGAGIMALPATMKILGLGLGIT 78

Query:    77 MIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYM 136
             MIV++ +LT++SI+ ++RFS+A K+ +Y G++  +FG  GR LLQV ++VNN+G+L+VYM
Sbjct:    79 MIVVMAFLTDASIEFLLRFSKAGKNRSYGGLMGGSFGNPGRILLQVAVLVNNIGVLIVYM 138

Query:   137 IIIGDVLSGAWLNGVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYT 196
             IIIGDVL+G   +G+HH GV E WFG HWW                    F+R+DSL++T
Sbjct:   139 IIIGDVLAGKTEDGIHHFGVLEGWFGHHWWNGRAAILLITTLGVFAPLACFKRIDSLKFT 198

Query:   197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICH 256
             SALSV LA+VF++ITAG++I+K I G ++MP LLP+++   SFW LFT  PVLVTA+ICH
Sbjct:   199 SALSVALAVVFLIITAGISIMKLISGGVAMPRLLPDVTDLTSFWNLFTVVPVLVTAFICH 258

Query:   257 HNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGI 316
             +N+H I+NEL+DP+QI+ +VR+++ LCS+VYI TS FG LLFGD TLDDVLANFD DLGI
Sbjct:   259 YNVHSIQNELEDPSQIRPVVRSALMLCSSVYIMTSIFGFLLFGDDTLDDVLANFDTDLGI 318

Query:   317 PYSSLLDD 324
             P+ S+L+D
Sbjct:   319 PFGSILND 326

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2166615 AT5G38820 "AT5G38820" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 170/308 (55%), Positives = 229/308 (74%)

Query:    17 APLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLI 76
             APLL ++ S+++   E      +GASFSGAVFNL+TTI+GAGIMALPAT+K LGLIPG+ 
Sbjct:    16 APLLQESSSESNGGGE-----FNGASFSGAVFNLATTIIGAGIMALPATMKILGLIPGIT 70

Query:    77 MIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYM 136
             +IVL+ +LT++SI+ ++RFS      +Y GV+ D+FG  GR +LQV I+V+N+G+L+VYM
Sbjct:    71 IIVLMAFLTDASIEFLLRFSNIGNQRSYGGVMDDSFGKCGRIMLQVSILVSNIGVLIVYM 130

Query:   137 IIIGDVLSGAWLNGVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYT 196
             IIIGDVL+G    G+HH+G+ E WFG  WW                    F+R+DSLR+T
Sbjct:   131 IIIGDVLAGKNEYGIHHAGMLEGWFGISWWNRRTFVLLVTTLTVFAPLTCFKRIDSLRFT 190

Query:   197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICH 256
             SA+SV LA+VF+VITAG+ I+K     + MP LLP ++  +SFWKLFT  PVLV AYICH
Sbjct:   191 SAISVALAVVFLVITAGITIIKLFTDGLMMPRLLPNVTDLSSFWKLFTVVPVLVNAYICH 250

Query:   257 HNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGI 316
             +N+H I+NEL+DP++IK +VR+++ +CS+VY+ TS FG LLFGD TLDDVLANFD DLGI
Sbjct:   251 YNVHSIQNELEDPSRIKPVVRSALAMCSSVYVMTSLFGYLLFGDGTLDDVLANFDTDLGI 310

Query:   317 PYSSLLDD 324
             P+ S+L+D
Sbjct:   311 PFGSVLND 318

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

TAIR|locus:2078381 AT3G56200 [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 126/307 (41%), Positives = 186/307 (60%)

Query:    19 LLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMI 78
             + PQ ++      E   +   G+S SG VFN+ST+I+GAGIM++PA  K LG++P  ++I
Sbjct:     1 MTPQIKTHLLPKQEPSSSENHGSSTSGIVFNVSTSIIGAGIMSMPAAFKVLGIVPAFLII 60

Query:    79 VLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMII 138
              ++ WL+  S+  +M+ + A +S TY+GV+ ++FG  G   +Q+  +V   G ++++ II
Sbjct:    61 TIIAWLSTISVGFLMKSTLAGESTTYAGVMKESFGKTGSIAVQIATMVATFGCMIIFSII 120

Query:   139 IGDVLSGAWLNGVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYTSA 198
             IGDVLSG    G  H GV +EWFG +WW                  +  RRV+ L  +SA
Sbjct:   121 IGDVLSGNENGGPEHIGVLQEWFGSYWWNTRIFALLFVYGFVLLPLVLRRRVERLAISSA 180

Query:   199 LSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHN 258
             +S  LA++FVVI++ +AI   ++G    P L PE+S   SFW+LFT  PV+VTA+  H N
Sbjct:   181 VSFLLAVLFVVISSVLAISALVNGQTKNPRLFPELSNGGSFWQLFTASPVIVTAFTFHFN 240

Query:   259 IHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPY 318
             +HPI  ELKDP Q+    + S+ LC+ +Y  T  FG LLFGD T+ D+L NFD   G   
Sbjct:   241 VHPIGFELKDPLQVIPATKISVILCAAIYFATGLFGYLLFGDATMSDILVNFDQSSGSSI 300

Query:   319 SSLLDDV 325
              SLL+D+
Sbjct:   301 GSLLNDI 307

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2063068 AT2G40420 "AT2G40420" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 134/311 (43%), Positives = 191/311 (61%)

Query:    16 RAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGL 75
             +APLLP  Q  +  + E H       SF+GAVFN+ST+IVGAGIMA+PA  K LG+IP L
Sbjct:     6 KAPLLPN-QEPSSSSSENH------GSFAGAVFNISTSIVGAGIMAIPAAFKVLGVIPSL 58

Query:    76 IMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVY 135
              +IV++ WL+  S   +M+ S A +S TY+GV+ ++FG +G   + V  +V   G ++++
Sbjct:    59 SIIVIIAWLSNVSAGFLMKSSLAGESTTYAGVMKESFGKSGAVAVTVVTMVVTFGSMIIF 118

Query:   136 MIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRY 195
              IIIGDV+SG   +G+ H G+ +EWFG HWW                  +  RRV+ L +
Sbjct:   119 SIIIGDVISGNEKDGIIHLGLLQEWFGSHWWNTRFFGLLFIFVFLFLPLVLCRRVERLAF 178

Query:   196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQA-SFWKLFTTFPVLVTAYI 254
             +SA+S  LA++FVVI++ +AI+  + G    P L PE++    SF+ LFT  PV+VTA+ 
Sbjct:   179 SSAISFLLALLFVVISSVLAIIALVQGKTKPPRLFPELNDGGLSFFSLFTASPVIVTAFT 238

Query:   255 CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL 314
              H N+HP+  ELKDP  + S  R S+ LC+T+Y  T  F  LLFGD T+ DVL NFD   
Sbjct:   239 FHFNVHPVAFELKDPLNVLSATRISVILCATIYSATGLFCYLLFGDSTMTDVLMNFDQST 298

Query:   315 GIPYSSLLDDV 325
                  SLL+D+
Sbjct:   299 SSSVGSLLNDI 309

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2198968 AT1G80510 [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 123/286 (43%), Positives = 179/286 (62%)

Query:    40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS 99
             G+   GAVFNL+T+I+GAGIMALPAT+K LGL+ G ++I+L+  L+E S+++++RFS   
Sbjct:    74 GSGIYGAVFNLTTSIIGAGIMALPATMKVLGLVLGFVLIILMALLSEISVELLVRFSVLY 133

Query:   100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEE 159
             KS +Y  VV  A G   R L ++CI+VNN G+LVVY+II+GDV+SG+    +HH GV ++
Sbjct:   134 KSKSYGEVVQFALGKTARVLSEICIIVNNGGVLVVYLIIMGDVMSGS----LHHIGVLDQ 189

Query:   160 WFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKT 219
             W G  +W                   +  ++DSL  TSA SV LA+VFVV+   VA +K 
Sbjct:   190 WLGNGFWDHRKVLILIVMVIFLAPLCALNKIDSLSVTSAASVALAVVFVVVCFVVATIKL 249

Query:   220 IDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENEL--KDPTQIKSIVR 277
             I+G+I  P L P+   + +   L    P++  AY+CH N+ PI NEL  + P ++  + R
Sbjct:   250 IEGTIDPPRLSPDFGSKQAILDLLVVIPIMSNAYVCHFNVQPIYNELEGRSPHKMNRVGR 309

Query:   278 TSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLD 323
              +  +C  VY +T+  G LLFG  T  D+L NFD DLGI +SS ++
Sbjct:   310 ITTAICVVVYASTAVSGYLLFGKDTESDILTNFDQDLGIRFSSAVN 355

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|I3LB54 SLC38A10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 243 (90.6 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 66/277 (23%), Positives = 130/277 (46%)

Query:    41 ASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK 100
             AS  G + N+  +IVG  ++ +P   K+ G++ G +++V   W+T  S   +++ +  SK
Sbjct:     6 ASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKAASLSK 65

Query:   101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEW 160
               TY+G+   A+G AG+ L++  ++   LG  V + ++IGD+  GA              
Sbjct:    66 RRTYAGLALHAYGKAGKMLVETSMIGLMLGTCVAFYVVIGDL--GA--------NFFARL 115

Query:   161 FGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTI 220
             FG                      +S +R + L    + S  +A++F  +   V ++ ++
Sbjct:   116 FGFQVTGTFRVLLLFAVSLCVVLPLSLQR-NVLASVQSFSA-MALIFYTVFMFVIVLSSL 173

Query:   221 DGSISMPCLLPEISKQASFWK-LFTTFPVLVTAYICHHNIHPIENELKDPT--QIKSIVR 277
                + +   L  +S     W+ +F   P+   ++ C   + P  + L +P+   + SI  
Sbjct:   174 KHGLFVGQWLRRVSYVR--WEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFA 231

Query:   278 TSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL 314
             +S+ + +T Y+T  FFG + F + T  +VL +F  +L
Sbjct:   232 SSLNVVTTFYVTVGFFGYVSFTEATEGNVLTHFPSNL 268

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050417-122 slc38a11 "solute carrier family 38, member 11" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 9.8e-19, P = 9.8e-19
 Identities = 76/295 (25%), Positives = 138/295 (46%)

Query:    24 QSQNHDNLEAHEAGIDGAS-FSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVG 82
             +S+    L +H+AG  G+S  S A FN   +I+G+GI+ LP ++ + GL  GL++++LV 
Sbjct:     2 ESERSCLLSSHDAGKGGSSSVSSASFNFINSIIGSGIIGLPYSMSQAGLPMGLLLLILVA 61

Query:    83 WLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDV 142
             ++T+ SI +++R    S + +Y  +V   FG  G  ++ V   +     ++ Y II GD 
Sbjct:    62 FITDYSIILLVRGGNLSGTHSYQSLVRSTFGQIGYIIVSVLQFLYPFIAMISYNIIAGDT 121

Query:   143 LSGAWLN--GVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYTSALS 200
             L+  ++   GV    +  E   +H+                   + F    SL Y     
Sbjct:   122 LTKVFMRIPGVGPGNILTE---RHF-------------VIAMSTVLFTLPLSL-YRDIAK 164

Query:   201 VG-LAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASF--WKLFTTFPVLVTAYICHH 257
             +G ++++ +++T G+ +   +  +   P  +P       F  W       V+  A ICHH
Sbjct:   165 LGKVSLLSMILTFGILMTVVVRAATLGP-QIPASDDAWVFARWNAIQAVAVMSFALICHH 223

Query:   258 NIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFF--GLLLFGDRTLDDVLANF 310
             N   I   L++PT  +  + T I++ S+V ++  F   G   F   T  D+  N+
Sbjct:   224 NSFMIYGSLQEPTLSRWSLVTHISVGSSVLVSAVFAAAGYATFTVYTQGDIFENY 278

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SRV0 SLC38A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 228 (85.3 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 79/299 (26%), Positives = 135/299 (45%)

Query:    32 EAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDM 91
             E H  G  G SF  +VFNL   I+G+GI+ L   +   G++   +++++V  L   S+ +
Sbjct:    36 ELHRQGSPGVSFGFSVFNLMNAIMGSGILGLAYVMAHTGILGFSLLLLMVALLASYSVHL 95

Query:    92 IMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA---WL 148
             ++     +   +Y  +   AFG  G+ ++   I++ N+G +  Y++II   L  A   +L
Sbjct:    96 LLSMCIQTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFL 155

Query:   149 NGVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYTSALSVGLAIVFV 208
             +G  HSG         W+                      ++  L YTS+LS      F+
Sbjct:   156 SG-DHSG--------SWYLDGETLLIIICVGIVFPLALLPKIGFLGYTSSLS----FFFM 202

Query:   209 VITAGVAIVKTIDGSISMPCLLPEISK--QASFW------KLFT-------TFPVLVTAY 253
             V  A V I+K    SI  P  L  I +  Q S        KLF          P +  ++
Sbjct:   203 VFFAIVIIIKK--WSIPCPLTLNYIERYFQISNVTDDCKPKLFHFSKESAYAIPTMAFSF 260

Query:   254 ICHHNIHPIENELKDPTQ--IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANF 310
             +CH +I PI  EL+ P++  ++++  T+I L   +Y  ++ FG L F D    ++L  +
Sbjct:   261 LCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDNVASELLQGY 319

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2443383 Slc38a11 "solute carrier family 38, member 11" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 79/301 (26%), Positives = 137/301 (45%)

Query:    18 PLLPQAQSQNHDNL-EAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLI 76
             PL  +  S + ++L   HE G   +S S AVFN+  +++G+GI+ LP ++K+ G   G++
Sbjct:    11 PLQRETDSSDRESLISGHEHG-GKSSQSAAVFNVVNSVIGSGIIGLPYSMKQAGFPLGIL 69

Query:    77 MIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYM 136
             ++ LV ++T+ S+ ++++    S + +Y  +V   FG  G  LL     +     ++ Y 
Sbjct:    70 LLFLVSYITDFSLVLLIKGGALSGTDSYQSLVNKTFGFPGYLLLSTLQFMYPFIAMISYN 129

Query:   137 IIIGDVLSGAW--LNGVHHSGVTEEWF-GQHWWXXXXXXXXXXXXXXXXXXISFRRVDSL 193
             II GD LS  +  L GV   G    WF  +H+                     +R +  L
Sbjct:   130 IITGDTLSKVFQRLPGVDPGG----WFISRHFIIVVSTVTCTLPLSL------YRDIAKL 179

Query:   194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWK--LFTTFPVLVT 251
                S +S  L  V +    G+ + +    +IS+   +P+      F K        V+  
Sbjct:   180 GKISFISTILTTVIL----GIVMTR----AISLGPNIPKTDNAWVFAKPNAIQAIGVMSF 231

Query:   252 AYICHHNIHPIENELKDPTQIK--SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLAN 309
             A+ICHHN   +   L++PT  K   I+ TSI +   + +  +  G   F   T  D+  N
Sbjct:   232 AFICHHNCFLVYGSLEEPTVAKWRRIIHTSILVSVFICVLFATCGYFTFTGFTQGDLFEN 291

Query:   310 F 310
             +
Sbjct:   292 Y 292

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HBR0 SLC38A10 "Putative sodium-coupled neutral amino acid transporter 10" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 63/277 (22%), Positives = 128/277 (46%)

Query:    41 ASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK 100
             AS  G + N+  +IVG  ++ +P   K+ G++ G +++V   W+T  S   +++ +  SK
Sbjct:     6 ASNWGLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSK 65

Query:   101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEW 160
               TY+G+   A+G AG+ L++  ++   LG  + + ++IGD+       G   S      
Sbjct:    66 RRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDL-------G---SNFFARL 115

Query:   161 FGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTI 220
             FG                      +S +R + +    + S  +A++F  +   V ++ ++
Sbjct:   116 FGFQVGGTFRMFLLFAVSLCIVLPLSLQR-NMMASIQSFSA-MALLFYTVFMFVIVLSSL 173

Query:   221 DGSISMPCLLPEISKQASFWK-LFTTFPVLVTAYICHHNIHPIENELKDPT--QIKSIVR 277
                +     L  +S     W+ +F   P+   ++ C   + P  + L +P+   + SI  
Sbjct:   174 KHGLFSGQWLRRVSYVR--WEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFA 231

Query:   278 TSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL 314
             +S+ + +T Y+   FFG + F + T  +VL +F  +L
Sbjct:   232 SSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHFPSNL 268

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.4152.1 amino acid transporter (414 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	3e-34
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	9e-27
PTZ00206	467	PTZ00206, PTZ00206, amino acid transporter; Provis	2e-21
TIGR00837	381	TIGR00837, araaP, aromatic amino acid transport pr	2e-08
pfam03222	393	pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme	9e-08

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  128 bits (325), Expect = 3e-34
 Identities = 66/283 (23%), Positives = 122/283 (43%), Gaps = 24/283 (8%)

Query: 39  DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMI------ 92
              S   AVFNL   I+GAG+++LP   K+LG IPGLI++V+VG ++  ++ ++      
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 93  MRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVH 152
           +   +  +  +Y  +    FG  G+ L+   I+VN  G+ + Y+I  GD L   + +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 153 HSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITA 212
                                ++    +F+PL     + +L   S ++   A+  + I  
Sbjct: 121 T------------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVA---AVSSLYIVI 165

Query: 213 GVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP--- 269
            V  V  +    +               +LF    ++V A+  H  + PI+N +K P   
Sbjct: 166 LVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKF 225

Query: 270 TQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDG 312
             +  ++ T+I + + +YI     G L FG+    ++L N   
Sbjct: 226 KAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK 268

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score =  108 bits (272), Expect = 9e-27
 Identities = 60/283 (21%), Positives = 116/283 (40%), Gaps = 25/283 (8%)

Query: 40  GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS 99
            +S  G V  L+ T +GAG++ LP      G  PGL+++++   LT  S+ +++    +S
Sbjct: 8   TSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSS 67

Query: 100 KS--ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVT 157
            +  A+ + +V D  G  G  L+ +       G+LV Y++ IG++L+             
Sbjct: 68  PNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASF----------- 116

Query: 158 EEWFGQHWWTTRFTLLLLTTLF--VFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVA 215
               G  +        L + +F  V   L     +  L+ TS L  G  I  V++   V 
Sbjct: 117 ---LGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV--VY 171

Query: 216 IVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ--IK 273
           ++   + +          S            PV V ++  H NI  + N ++  ++  ++
Sbjct: 172 LIPHWNPANLFALPSASQSFWKYLL---LAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVR 228

Query: 274 SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGI 316
             +     +   +YI   FF    FG     ++LA  + ++ +
Sbjct: 229 KAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISL 271

Length = 415

>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional

 Score = 93.8 bits (233), Expect = 2e-21
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 33/284 (11%)

Query: 44  SGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSAT 103
           + + FN++++ VGAGI+ LP+     GL+  +I ++++  +T  SI  +   +  +   T
Sbjct: 63  AASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRT 122

Query: 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQ 163
           Y GV     G  G   +      +     V Y+I +GD+LS A L G +     ++  G 
Sbjct: 123 YEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILS-ATLKGTNAPDFLKQKSGN 181

Query: 164 HWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGS 223
              T+      L  L   LPL+  R +DSLRY S ++V   +  V++   + +   ++G 
Sbjct: 182 RLLTS------LMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIV---IVVHSCMNG- 231

Query: 224 ISMPCLLPEISKQASFWK-------LFTT-------FPVLVTAYICHHNIHPIENELKDP 269
                 LPE  K  S  K       LF +         V + AY+     + +  ++ + 
Sbjct: 232 ------LPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285

Query: 270 TQIKSIVRTSITL--CSTVYITTSFFGLLLFGDRTLDDVLANFD 311
           +  K ++ ++I +  C T+Y+ T+FFG + FG      VL  +D
Sbjct: 286 SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYD 329

Length = 467

>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 24/218 (11%)

Query: 45  GAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGW--LTESSIDMIMRFSRASKSA 102
           G    ++ T +GAG++ALP +      I  L++++L+ W  +  S + ++  +      A
Sbjct: 1   GGALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILL-WFLMLHSGLLLLEVYLTYPGGA 59

Query: 103 TYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162
           +++ +  D  G  G        ++  L +L V  I+    +SG    G   S +  E+FG
Sbjct: 60  SFNTIAKDLLGKTGN-------IIAGLSLLFVLYILTYAYISGG---GSILSRLIGEYFG 109

Query: 163 QHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDG 222
              W+ R  +L+ T LF     +S   VD  R T  L  G  I F ++ +G  ++  + G
Sbjct: 110 FP-WSARAIVLIFTVLFGSFVWLSTSAVD--RITRVLIFGKIIAFALVFSG--LLPHVKG 164

Query: 223 SISMPCLLPEISKQASFWK-LFTTFPVLVTAYICHHNI 259
                 LL +++   S+W  + +  PV +T++  H N+
Sbjct: 165 D-----LLLDVALDTSYWPYILSALPVCLTSFGFHGNV 197

The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- tyrosine/tryptophan subfamily (TC 2.A.42.1) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli [Transport and binding proteins, Amino acids, peptides and amines]. Length = 381

>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 23/220 (10%)

Query: 42  SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS 101
           S  G V  ++ T +GAG++ALP      G IP L++++L  +L  +S  +++        
Sbjct: 4   SLLGGVLIIAGTAIGAGMLALPVATAGAGFIPSLLLLILSWFLMLASGLLLLEVYLWYPE 63

Query: 102 -ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEW 160
            A+++ +  D  G  G        ++  L    +  I+    +SG    G   S V  E 
Sbjct: 64  GASFNTLAKDLLGKKGN-------IIAGLVYAFLLYILTYAYISGG---GSILSRVIPEM 113

Query: 161 FGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTI 220
           FG   W+ R   L+ T LF        + VD  R    L  G  I F ++ +G+     I
Sbjct: 114 FGIP-WSARAAPLIFTLLFGPFVWAGTKAVD--RINRVLIFGKIIAFALVFSGLLPK--I 168

Query: 221 DGSISMPCLLPEISKQASFWK-LFTTFPVLVTAYICHHNI 259
            G + +       +   S+W  +    PV  T++  H N+
Sbjct: 169 KGDLLLD------ALDTSYWPYILMALPVFFTSFGFHGNV 202

Length = 393

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
PLN03074	473	auxin influx permease; Provisional	99.97
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.96
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.9
PRK10483	414	tryptophan permease; Provisional	99.83
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.82
PRK09664	415	tryptophan permease TnaB; Provisional	99.81
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.79
PRK15132	403	tyrosine transporter TyrP; Provisional	99.78
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.66
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.66
TIGR00912	359	2A0309 spore germination protein (amino acid perme	99.62
PF03845	320	Spore_permease: Spore germination protein; InterPr	99.52
PRK10655	438	potE putrescine transporter; Provisional	99.5
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.47
PRK10249	458	phenylalanine transporter; Provisional	99.42
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.42
PRK11387	471	S-methylmethionine transporter; Provisional	99.42
PRK10644	445	arginine:agmatin antiporter; Provisional	99.41
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.41
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.41
PRK10836	489	lysine transporter; Provisional	99.41
TIGR00911	501	2A0308 L-type amino acid transporter.	99.4
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.39
TIGR00909	429	2A0306 amino acid transporter.	99.39
PRK10238	456	aromatic amino acid transporter; Provisional	99.38
PRK15049	499	L-asparagine permease; Provisional	99.37
TIGR00930	953	2a30 K-Cl cotransporter.	99.37
TIGR00913	478	2A0310 amino acid permease (yeast).	99.35
PRK11021	410	putative transporter; Provisional	99.34
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.34
PRK10580	457	proY putative proline-specific permease; Provision	99.33
PRK10746	461	putative transport protein YifK; Provisional	99.31
KOG1287	479	consensus Amino acid transporters [Amino acid tran	99.3
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.25
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.2
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.19
KOG3832	319	consensus Predicted amino acid transporter [Genera	99.19
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.17
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.13
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.07
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.95
KOG1286	554	consensus Amino acid transporters [Amino acid tran	98.91
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.91
PRK15238	496	inner membrane transporter YjeM; Provisional	98.82
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	98.58
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.57
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.48
PRK11375	484	allantoin permease; Provisional	98.4
COG3949	349	Uncharacterized membrane protein [Function unknown	98.39
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	98.37
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.28
PRK12488	549	acetate permease; Provisional	97.82
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	97.8
TIGR00813	407	sss transporter, SSS family. have different number	97.8
PRK09442	483	panF sodium/panthothenate symporter; Provisional	97.77
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	97.75
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	97.74
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	97.64
KOG1289	550	consensus Amino acid transporters [Amino acid tran	97.62
PRK09395	551	actP acetate permease; Provisional	97.62
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	97.5
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	97.45
PRK11017	404	codB cytosine permease; Provisional	97.44
COG1457	442	CodB Purine-cytosine permease and related proteins	97.37
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	97.36
COG1953	497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	97.34
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	97.34
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	97.3
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	97.15
PRK15015	701	carbon starvation protein A; Provisional	97.1
COG1966	575	CstA Carbon starvation protein, predicted membrane	96.87
KOG2083	643	consensus Na+/K+ symporter [Inorganic ion transpor	96.63
KOG1288	945	consensus Amino acid transporters [Amino acid tran	96.58
PRK10484	523	putative transporter; Provisional	96.5
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	96.42
PRK15419	502	proline:sodium symporter PutP; Provisional	96.25
COG0733	439	Na+-dependent transporters of the SNF family [Gene	96.19
COG4147	529	DhlC Predicted symporter [General function predict	95.66
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	95.56
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	94.68
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	94.31
KOG2466	572	consensus Uridine permease/thiamine transporter/al	94.27
TIGR00906	557	2A0303 cationic amino acid transport permease.	92.65
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	92.53
TIGR00909	429	2A0306 amino acid transporter.	91.54
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	90.63
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	89.39
KOG3660	629	consensus Sodium-neurotransmitter symporter [Signa	88.37
PRK15433	439	branched-chain amino acid transport system 2 carri	88.29
PRK00701	439	manganese transport protein MntH; Reviewed	81.98
KOG2082	1075	consensus K+/Cl- cotransporter KCC1 and related tr	80.65
KOG1289	550	consensus Amino acid transporters [Amino acid tran	80.44

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.4e-39  Score=306.95  Aligned_cols=264  Identities=26%  Similarity=0.404  Sum_probs=209.9

Q ss_pred             CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHH
Q 020541           38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR  117 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~  117 (325)
                      -.+++..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.|+.+++.++.++.+..+|+|++++++||+++
T Consensus        57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~  136 (467)
T PTZ00206         57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGS  136 (467)
T ss_pred             cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhH
Q 020541          118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTS  197 (325)
Q Consensus       118 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s  197 (325)
                      +++++.+++.++|+|++|+++.+|.++++++....     .++.+. ....|. .+.++++++++|++++|+++.++++|
T Consensus       137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-----~~~~~~-~~~~r~-~~~~i~~~i~lPLs~~r~i~~L~~~S  209 (467)
T PTZ00206        137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNA-----PDFLKQ-KSGNRL-LTSLMWLCFMLPLVIPRHIDSLRYVS  209 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----cchhhh-ccCcEE-eeeehhhhHhhhcccccchHHHHHHH
Confidence            99999999999999999999999999887753211     112111 111232 22334556899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCC---CCCCC----CCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541          198 ALSVGLAIVFVVITAGVAIVKTIDGS---ISMPC----LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT  270 (325)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~  270 (325)
                      .++++ ++++..+.++  .+...++.   .++.+    ..++........+++.++|+++|||.+|.+++++++||+||+
T Consensus       210 ~i~~~-~i~~~vi~iv--i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t  286 (467)
T PTZ00206        210 TIAVS-FMVYLVIVIV--VHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRS  286 (467)
T ss_pred             HHHHH-HHHHHHhhhh--hhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccc
Confidence            99984 3333333221  11111211   11000    011111122234678899999999999999999999999866


Q ss_pred             --chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCC
Q 020541          271 --QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD  311 (325)
Q Consensus       271 --~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~  311 (325)
                        |+.+++.+++.+++++|.++|+.||+.||+++++++++|++
T Consensus       287 ~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~  329 (467)
T PTZ00206        287 VGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYD  329 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCC
Confidence              88899999999999999999999999999999999999995

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-38  Score=291.26  Aligned_cols=269  Identities=22%  Similarity=0.398  Sum_probs=219.9

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCHHHHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS------KSATYSGVVAD  110 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~------~~~~y~~l~~~  110 (325)
                      ++|+.|++++.++.++.++|.|+|+|||+++++||+.|+++++..++++.||..+|.+|.+.+      ++++|+|++++
T Consensus        34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~  113 (437)
T KOG1303|consen   34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA  113 (437)
T ss_pred             cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999876      34569999999


Q ss_pred             HcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccccc
Q 020541          111 AFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRV  190 (325)
Q Consensus       111 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l  190 (325)
                      +||+++++++.+.+.+.++++++.|++..+|++..+++....+..         ....+.+.  ++..++.+|++++|++
T Consensus       114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---------~l~~~~f~--iif~~i~~~~s~lp~~  182 (437)
T KOG1303|consen  114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN---------SLDKQYFI--IIFGLIVLPLSQLPNF  182 (437)
T ss_pred             HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------cccceehh--hhHHHHHHHHHHCCCc
Confidence            999999999999999999999999999999999888875444321         11123332  3344689999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541          191 DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT  270 (325)
Q Consensus       191 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~  270 (325)
                      ..+++.|..+.+++..+..+.++........... .....+...+..   ..++++|+++|+|.+|.++|++|++||+|+
T Consensus       183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~-~~~~~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p~  258 (437)
T KOG1303|consen  183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCA-PSGGYLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSPP  258 (437)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhccccccCC-cccCcccCCCCc---chhhhhhheeeeecCCeeeeehHhhcCCch
Confidence            9999999999988877766666554333211101 101111111111   117999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCC-CCCCchhhh
Q 020541          271 QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD-GDLGIPYSS  320 (325)
Q Consensus       271 ~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~-~~~~~~~~~  320 (325)
                      +++|++..++.+++++|+.+++.||++|||+++++++.|+. +.......+
T Consensus       259 ~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~an  309 (437)
T KOG1303|consen  259 KFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALAN  309 (437)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHH
Confidence            99999999999999999999999999999999999999995 444444443

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-38  Score=284.97  Aligned_cols=266  Identities=22%  Similarity=0.358  Sum_probs=215.5

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCHHHHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS------KSATYSGVVAD  110 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~------~~~~y~~l~~~  110 (325)
                      .++..|..++..|+.|.++|+|+|+||++|+++|++.|.+...+.++++.||.+.+++|.++-      ...+|++.++.
T Consensus        43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~  122 (449)
T KOG1304|consen   43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES  122 (449)
T ss_pred             CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999998742      34567777765


Q ss_pred             H----------cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHH
Q 020541          111 A----------FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFV  180 (325)
Q Consensus       111 ~----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i  180 (325)
                      +          +||++|++++++++++++|.|++|++++++++.++.+.          .. ...++.+.+++  +.++.
T Consensus       123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~----------~~-~~~~s~~~~i~--~~~~~  189 (449)
T KOG1304|consen  123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE----------HS-PGVLSVRLYIL--IQLPP  189 (449)
T ss_pred             HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc----------cC-CCCccHHHHHH--HHHHH
Confidence            5          48999999999999999999999999999999887751          11 11123444433  34557


Q ss_pred             hhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchh
Q 020541          181 FLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIH  260 (325)
Q Consensus       181 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~  260 (325)
                      ++|++++|+++.|..+|.++.++.    ++.+++..++..++.. +....|.+   ..+.++...+|+.+|||+++.++.
T Consensus       190 ~lll~~Ir~Lk~Lsp~Sl~Anv~~----~~g~~ii~~y~~~~~~-~~~~~~~~---~~~~~~~lf~GtaifafEGig~VL  261 (449)
T KOG1304|consen  190 LLLLNLIRNLKILSPFSLFANVFI----LVGLAIIMYYLVQDLP-PTSDLPAV---TGWSGLPLFFGTAIFAFEGIGMVL  261 (449)
T ss_pred             HHHHHHHHhhHHhhHHHHHHHHHH----HHHHHHHHHHHHhccC-Cccccccc---cchhhhHHHHHHHHHHhccceEEE
Confidence            888888988888888888777433    3334444455444422 22223333   335567788999999999999999


Q ss_pred             HHHhhcCCCcchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCCCchhhhhcc
Q 020541          261 PIENELKDPTQIK---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLD  323 (325)
Q Consensus       261 ~i~~~m~~p~~~~---~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~~l~  323 (325)
                      |++++||+|++++   +++..++.+++++|..+|++||++||+++++.|++|+|++..+...+++.
T Consensus       262 PlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~  327 (449)
T KOG1304|consen  262 PLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLL  327 (449)
T ss_pred             ehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHH
Confidence            9999999999999   99999999999999999999999999999999999999977666666553

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=5.1e-38  Score=293.71  Aligned_cols=268  Identities=31%  Similarity=0.576  Sum_probs=218.3

Q ss_pred             CCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCHHHHHHHHcCh
Q 020541           39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA----SKSATYSGVVADAFGG  114 (325)
Q Consensus        39 ~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----~~~~~y~~l~~~~~G~  114 (325)
                      +|.|.++++++++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.++.++    .+..+|+|++++++||
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~   80 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP   80 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            578999999999999999999999999999999999999999999999999999999985    4788999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      ++++++++++.+.++|.+++|+++.+|.+.++++....+          . ...+. .+.++..++++|++++|+++.++
T Consensus        81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----------~-~~~~~-~~~~i~~~i~~pls~~~~l~~l~  148 (409)
T PF01490_consen   81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----------L-FISRY-VWIIIFALIVLPLSFLKNLKSLR  148 (409)
T ss_pred             cccccccchheeccccccceeEEEeeeeeeccccccccc----------c-ccccc-ccccccccccccccccchhhHHH
Confidence            999999999999999999999999999998887643211          0 11222 22334556899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc--ccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcch
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPE--ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQI  272 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~~  272 (325)
                      +.|.++.++....+.+.+ .   ........+++..+.  .....++.+++.++++++|||.+|+++|++++|||+|+|+
T Consensus       149 ~~s~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~  224 (409)
T PF01490_consen  149 YLSILGLFSIFYFIVIVV-I---YIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF  224 (409)
T ss_pred             HHhhhhhhccceeeeeec-c---eeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc
Confidence            999999854332211111 1   111111111111111  1223456789999999999999999999999999999987


Q ss_pred             h---HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCC-Cchhhhhc
Q 020541          273 K---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL-GIPYSSLL  322 (325)
Q Consensus       273 ~---~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~-~~~~~~~l  322 (325)
                      +   ++..+++.+++++|.++|+.||++||+++++|++.|+++++ ...+.+++
T Consensus       225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~  278 (409)
T PF01490_consen  225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARIL  278 (409)
T ss_pred             cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCccccccccccc
Confidence            7   99999999999999999999999999999999999999886 55555554

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-33  Score=253.98  Aligned_cols=273  Identities=37%  Similarity=0.600  Sum_probs=220.5

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG  116 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~  116 (325)
                      .+++.|.+.++++++|+++|+|+|++|++|++.|.+.|++++.+++.++.++.+++.++.++.+..+|+++++..+|+.+
T Consensus         2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g   81 (411)
T KOG1305|consen    2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLG   81 (411)
T ss_pred             CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCc
Confidence            46778999999999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhh
Q 020541          117 RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYT  196 (325)
Q Consensus       117 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~  196 (325)
                      +....+.......| +++|++.++|.++.....     ...+++.+.+ |+.|.+.+.+....+++|+++.|+++++++.
T Consensus        82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~-----~~~~~~~~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~t  154 (411)
T KOG1305|consen   82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRS-----LFLDEEGGSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYT  154 (411)
T ss_pred             eeeehhhHHhhhcc-ceEEEEEEccccchhhhh-----cccccccccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHH
Confidence            76666666666666 699999999999744332     2223333333 5566665566667799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc--chhH
Q 020541          197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT--QIKS  274 (325)
Q Consensus       197 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~--~~~~  274 (325)
                      |.++....+.++.+++    ++........++..+.......+++.+.++|+++|||.||+++.++++||+||+  |+.+
T Consensus       155 S~~s~~~~~~fv~~vv----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~  230 (411)
T KOG1305|consen  155 SALSLASVVYFVVLVV----YKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR  230 (411)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH
Confidence            9999855444433332    232332211122222222223336889999999999999999999999999999  6999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCCCchhhh
Q 020541          275 IVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSS  320 (325)
Q Consensus       275 ~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~  320 (325)
                      +...+...++++|..+|+.||+.||+++.+|++.|++++......+
T Consensus       231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~  276 (411)
T KOG1305|consen  231 VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRS  276 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhh
Confidence            9999999999999999999999999999999999999877665433

>PLN03074 auxin influx permease; Provisional

Probab=99.97  E-value=4.3e-31  Score=248.45  Aligned_cols=259  Identities=14%  Similarity=0.101  Sum_probs=198.4

Q ss_pred             CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC--C-------CCH
Q 020541           38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA----SK--S-------ATY  104 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~----~~--~-------~~y  104 (325)
                      +++.+..++.+++++..+|.|+|+||++|+++||+.|++.+++.++++.||.+++.++..+    ++  .       .+|
T Consensus        43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~  122 (473)
T PLN03074         43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW  122 (473)
T ss_pred             cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence            5688999999999999999999999999999999999999999999999999999886543    21  1       257


Q ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcc
Q 020541          105 SGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPL  184 (325)
Q Consensus       105 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl  184 (325)
                      .|+++..+||+++.+..+...+++++.++.|++..++.+..+..                ..+.|.+.++  ...+..|+
T Consensus       123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~----------------~~~~~~~~~i--~~~v~~~~  184 (473)
T PLN03074        123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND----------------NLDKRTWTYI--FGACCATT  184 (473)
T ss_pred             HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC----------------CcCCCeEEee--hHHHHHHH
Confidence            89999999999999999999999999999999988876643310                0123332222  22366778


Q ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHh
Q 020541          185 ISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIEN  264 (325)
Q Consensus       185 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~  264 (325)
                      +++|++++++++|.+++..++.....++....   .++..+.   .+. +...++..++.++++++|+|.+|.++|++++
T Consensus       185 ~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i---~~~~~~~---~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~  257 (473)
T PLN03074        185 VFIPSFHNYRIWSFLGLLMTTYTAWYMTIAAL---SHGQVEG---VKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMH  257 (473)
T ss_pred             HHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCC---CCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            88999999999999997543332222221111   1121111   111 1123456677888889999999999999999


Q ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch--hhhhcCCCCCCCchhhhh
Q 020541          265 ELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTL--DDVLANFDGDLGIPYSSL  321 (325)
Q Consensus       265 ~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~--~~il~n~~~~~~~~~~~~  321 (325)
                      +||||++++++..++....+..|+.+++.||++|||+++  .+.++|+|++....+.++
T Consensus       258 ~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~  316 (473)
T PLN03074        258 AMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVI  316 (473)
T ss_pred             hccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHH
Confidence            999999999999999999999999999999999999875  466888987654444444

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.96  E-value=2.9e-28  Score=226.13  Aligned_cols=261  Identities=24%  Similarity=0.357  Sum_probs=212.3

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA--TYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~--~y~~l~~~~~G~  114 (325)
                      .+.+.+..+.++++.++++|+|+|+||++++..|++.+++++++++.++.++.+++.|+..+.+..  ++.+++++.+||
T Consensus         5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~   84 (415)
T COG0814           5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGK   84 (415)
T ss_pred             ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCc
Confidence            567789999999999999999999999999999999999999999999999999999999998765  999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      ++++++++.+.+.+++.+.+|.+..++.+++.+++.          ++... ..|.....++. .++.++++.++...++
T Consensus        85 ~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~----------~~~~~-~~r~~~~lif~-~~~~~l~~~~~~~~lk  152 (415)
T COG0814          85 KGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQ----------FGLNP-LPRKLGSLIFA-LVLAFLSWLGTLAVLK  152 (415)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhh----------cccCC-cchHHHHHHHH-HHHHHHHHhchhHHHH
Confidence            999999999999999999999999999997776531          11110 13444444443 4667799999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-c-h
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q-I  272 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~-~  272 (325)
                      ..+.+.... +.++++..   .+..-+.+...-...|... ...+..+..++|+++|||.+|+++|+++++||+++ + .
T Consensus       153 ~ts~l~~~~-v~~~~~l~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~  227 (415)
T COG0814         153 ITSLLVFGK-VIYLVLLV---VYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAV  227 (415)
T ss_pred             HHHHHHHHH-HHHHHHHH---HHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHH
Confidence            999988743 33333222   2222221111111111111 24566788999999999999999999999999887 4 9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCC
Q 020541          273 KSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDL  314 (325)
Q Consensus       273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~  314 (325)
                      +|+...+..+..++|..+++.+|..+|+.+.+++++++++++
T Consensus       228 ~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~  269 (415)
T COG0814         228 RKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI  269 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence            999999999999999999999999999999999999997654

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.90  E-value=2.6e-24  Score=185.53  Aligned_cols=259  Identities=15%  Similarity=0.203  Sum_probs=209.0

Q ss_pred             CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCCHHHHHH
Q 020541           38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK--------SATYSGVVA  109 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~--------~~~y~~l~~  109 (325)
                      ..+++-+|+..+..|++=|.=+++||++...+||+ ++..++.++.+++||..+|++|..+.+        +++|..++.
T Consensus       114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~  192 (524)
T KOG4303|consen  114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD  192 (524)
T ss_pred             CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence            46889999999999999999999999999999986 899999999999999999999998753        679999999


Q ss_pred             HHcCh-hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccc
Q 020541          110 DAFGG-AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR  188 (325)
Q Consensus       110 ~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~  188 (325)
                      ..++| .|++.+.+.+++.+...|+.|+++.+|.++.-+|..+.              .++.+.+  +....++|..++|
T Consensus       193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~sv--------------d~~sWm~--i~~a~LLpc~FLk  256 (524)
T KOG4303|consen  193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSV--------------DKASWMM--ITSASLLPCSFLK  256 (524)
T ss_pred             HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCc--------------cccchhh--hhhHHHhhhHHHH
Confidence            98877 45699999999999999999999999999777664221              1233232  2334789999998


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC
Q 020541          189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTID-GSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK  267 (325)
Q Consensus       189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~  267 (325)
                      +++.++.+|++..   +.-+++=+....|++.+ ++..+.    .+....+..++..++|+++|+|..|.-+|.+...|+
T Consensus       257 ~Lk~VS~lSf~ct---~sH~viN~i~v~YCLs~~~dW~ws----kv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~  329 (524)
T KOG4303|consen  257 DLKIVSRLSFFCT---ISHLVINLIMVLYCLSFVSDWSWS----KVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMK  329 (524)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccce----eEEEEEEcccCceEEEEEEEeeeceeeccccccccC
Confidence            8888777777665   33344444444565443 222221    222233445677889999999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcCCCCCCCchhhh
Q 020541          268 DPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSS  320 (325)
Q Consensus       268 ~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~  320 (325)
                      +|+++...+.|+=+...++-..+|..||++|++.+++.|++|+|+.+.-.+.+
T Consensus       330 ~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN  382 (524)
T KOG4303|consen  330 NPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVN  382 (524)
T ss_pred             ChhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhh
Confidence            99999999999999999999999999999999999999999999866544433

>PRK10483 tryptophan permease; Provisional

Probab=99.83  E-value=1.4e-18  Score=159.32  Aligned_cols=244  Identities=16%  Similarity=0.195  Sum_probs=173.3

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~  115 (325)
                      ++++.+.+.+++.+.++++|+|+|++|.+.++.|+..+++.++++|.+..||+.++.|++.+. +..++.+++++.+||+
T Consensus         7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~   86 (414)
T PRK10483          7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKG   86 (414)
T ss_pred             ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChH
Confidence            678889999999999999999999999999999999999999999999999999999998875 5668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      |+.+.++.+.+..++.+.+|..-.|+.+++.+++.  ..++ +.+.      .......+...++..   -.|..+++.+
T Consensus        87 g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i-~~~~------~~llF~~~~~~iv~~---gt~~vd~~n~  154 (414)
T PRK10483         87 WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNV-PARA------AGFGFALLVAFVVWL---STKAVSRMTA  154 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCC-cHHH------HHHHHHHHHHHHHHh---hhhHHHHHHH
Confidence            99999999999999999999999999997777531  0011 1110      111111111111111   1233444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcchhH
Q 020541          196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKS  274 (325)
Q Consensus       196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~~~  274 (325)
                      .-..+.+.+.   ...+.. .....+.+  .-...+ +..+..+.....++|++++||..|+++|++.+.++ |++|.+|
T Consensus       155 ~l~~~~i~~f---~~~~~~-l~~~i~~~--~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~  227 (414)
T PRK10483        155 IVLGAKVITF---FLTFGS-LLGHVQPA--TLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK  227 (414)
T ss_pred             HHHHHHHHHH---HHHHHH-HHhhcCHH--HHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH
Confidence            4343332211   111111 11111110  000011 11112234567889999999999999999999988 4669999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541          275 IVRTSITLCSTVYITTSFFGLLLFG  299 (325)
Q Consensus       275 ~~~~~~~~~~~~y~~~g~~gy~~fG  299 (325)
                      ++..+..+..++|+..-..+...-+
T Consensus       228 ~I~iGs~Iplv~yl~W~~~~lg~l~  252 (414)
T PRK10483        228 CLVYGTLMALALYTIWLLATMGNIP  252 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999997776666544

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.82  E-value=2.6e-18  Score=158.71  Aligned_cols=238  Identities=21%  Similarity=0.281  Sum_probs=168.1

Q ss_pred             CCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHH
Q 020541           40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRA  118 (325)
Q Consensus        40 ~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~  118 (325)
                      +.+.+.+++.+.++++|+|+|+||++....|...+.+.+++++.+++++..++.|+..+. +..++.+++++.+||++++
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~   81 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI   81 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence            457899999999999999999999999999999999999999999999999999999877 6789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHH
Q 020541          119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA  198 (325)
Q Consensus       119 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~  198 (325)
                      +..+.+.+..++.+.+|..-.++.+.+.++.....        +   .+.+. ...++.. ++..+... ..+.+.+...
T Consensus        82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--------~---~~~~~-~~~~f~~-i~~~iv~~-g~~~v~~~n~  147 (394)
T PF03222_consen   82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--------D---LSPWL-SSLLFTI-IFGGIVYF-GTKAVDRINR  147 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------C---CcHHH-HHHHHHH-HHHHHHHh-hHHHHHHHHH
Confidence            99999999999999999999999997776532110        0   11111 1111111 11111111 1123333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcchhHHHH
Q 020541          199 LSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKSIVR  277 (325)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~~~~~~  277 (325)
                      +-+..-+..+...+...+.+   .+.+  +.........++.....++|+.++||..|+++|++.+.++ |++|.+|++.
T Consensus       148 ~lv~~~i~~~~~l~~~~~p~---~~~~--~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~  222 (394)
T PF03222_consen  148 VLVFGMIISFIILVVYLIPH---WNPS--NLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAII  222 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhh---cCHH--HhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHH
Confidence            22211111112222111111   1111  1111011123456678899999999999999999999999 6669999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 020541          278 TSITLCSTVYITTSFFGLL  296 (325)
Q Consensus       278 ~~~~~~~~~y~~~g~~gy~  296 (325)
                      ++..+..++|++.-...-.
T Consensus       223 ~Gs~i~lv~yl~w~~~~lg  241 (394)
T PF03222_consen  223 IGSLIPLVMYLLWVFSILG  241 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999987665543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.81  E-value=4.1e-18  Score=156.10  Aligned_cols=239  Identities=14%  Similarity=0.147  Sum_probs=164.6

Q ss_pred             CCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhH
Q 020541           38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAG  116 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~  116 (325)
                      ++|.+.+.+++.+.++++|+|+|++|.+.+++|+..+++.+++++.+..||+.++.|++.+. +..++.+++++.+||+|
T Consensus         6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g   85 (415)
T PRK09664          6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTW   85 (415)
T ss_pred             hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence            34448888999999999999999999999999999999999999999999999999999887 56689999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccc--ccccchhh
Q 020541          117 RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLR  194 (325)
Q Consensus       117 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~--~~~l~~l~  194 (325)
                      +.+.++...+..++.+.+|..-.|+.+++.+++..   +.     +   .+.+ ... +...+++-++..  .|..+++.
T Consensus        86 ~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~---~~-----~---i~~~-~~~-llF~~~~~~~v~~gt~~vd~~n  152 (415)
T PRK09664         86 NIISGITVAFVLYILTYAYISANGAIISETISMNL---GY-----H---ANPR-IVG-ICTAIFVASVLWISSLAASRIT  152 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc---cC-----C---CcHH-HHH-HHHHHHHHHHHHhchhHHHHHH
Confidence            99999999999999999999999999977764210   00     0   0111 111 111112222221  23344444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcch
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQI  272 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~  272 (325)
                      +.-......+   ++..+...... .+.  +.-...+... ....+..+..++|++++||..|+++|++.+.++ |++|.
T Consensus       153 r~l~~~~ii~---f~~~~~~l~~~-i~~--~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~  226 (415)
T PRK09664        153 SLFLGLKIIS---FVIVFGSFFFQ-VDY--SILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKL  226 (415)
T ss_pred             HHHHHHHHHH---HHHHHHHHhhc-ccH--HHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHH
Confidence            4333332111   11111111111 110  0001111111 001123467789999999999999999999988 45688


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 020541          273 KSIVRTSITLCSTVYITTSFFGL  295 (325)
Q Consensus       273 ~~~~~~~~~~~~~~y~~~g~~gy  295 (325)
                      +|++..+..+..++|+..-....
T Consensus       227 ~kaIl~Gs~IpLviY~~W~~~il  249 (415)
T PRK09664        227 IKSVVFGSLLALVIYLFWLYCTM  249 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999977655443

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.79  E-value=3.2e-18  Score=158.66  Aligned_cols=237  Identities=15%  Similarity=0.225  Sum_probs=170.0

Q ss_pred             HHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhHHHHHHHHHH
Q 020541           47 VFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAGRALLQVCIV  125 (325)
Q Consensus        47 ~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~~~~~  125 (325)
                      +...+++++|+|+|++|..+.+.|+..+++.+++++.++.++..++.|...+.+ ..++.+++++++||++++++++...
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~   82 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL   82 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence            455789999999999999999999999999999999999999999999988774 6799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHH
Q 020541          126 VNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAI  205 (325)
Q Consensus       126 ~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~  205 (325)
                      +.++..+.+|.+..++.+...++.          +.... . .+.....+ ..+++. ....+..+...+++.+.++..+
T Consensus        83 ~~~~~~~~ay~~~~~~~l~~~~~~----------~~~~~-~-~~~~~~~~-~~~v~~-~l~~~G~~~~~~v~~i~~~~~l  148 (381)
T TIGR00837        83 FVLYILTYAYISGGGSILSRLIGE----------YFGFP-W-SARAIVLI-FTVLFG-SFVWLSTSAVDRITRVLIFGKI  148 (381)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHH----------hcCCC-c-cHHHHHHH-HHHHHH-HHHHhchhHHHHHHHHHHHHHH
Confidence            999999999999999888665542          11111 1 12222222 222222 3334455666666666654333


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcchhHHHHHHHHHHH
Q 020541          206 VFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKSIVRTSITLCS  284 (325)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~~~~~~~  284 (325)
                      ..+++.+.....+   .+.  .+..|.......+.++..+++...++|..|.+++.+.++++ |++|.+|+..++..+.+
T Consensus       149 ~~l~~~ii~~~~~---~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~  223 (381)
T TIGR00837       149 IAFALVFSGLLPH---VKG--DLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIAL  223 (381)
T ss_pred             HHHHHHHHHHHhh---ccH--HHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            3322222222111   111  11111100012345677889999999988889999999997 55599999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCc
Q 020541          285 TVYITTSFFGLLLFGDRT  302 (325)
Q Consensus       285 ~~y~~~g~~gy~~fG~~~  302 (325)
                      ++|+++........+.+.
T Consensus       224 ~lY~l~~~~~~g~~~~~~  241 (381)
T TIGR00837       224 VLYILWQLATMGNLPRSE  241 (381)
T ss_pred             HHHHHHHHHHhCCCCHHH
Confidence            999999988887776443

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.78  E-value=2.2e-17  Score=151.98  Aligned_cols=237  Identities=16%  Similarity=0.204  Sum_probs=166.5

Q ss_pred             cHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHHH
Q 020541           42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRALL  120 (325)
Q Consensus        42 s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~~~  120 (325)
                      +...+++.+.++++|+|+|++|.+....|++.+++.+++++.+..|+.+++.|++.+. +..++.+++++.+||+|+++.
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~   83 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT   83 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence            7788999999999999999999999999999999999999999999999999987775 457899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHH-HhhccccccccchhhhhHHH
Q 020541          121 QVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLF-VFLPLISFRRVDSLRYTSAL  199 (325)
Q Consensus       121 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-i~~pl~~~~~l~~l~~~s~~  199 (325)
                      .+.+.+..+..+.+|..-.|+.+.+.+++          +.+.+ .+... ...++.++ ..+...-.|...++...-..
T Consensus        84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~----------~~~~~-i~~~~-~~l~F~~~~~~iv~~g~~~v~~~n~~L~~  151 (403)
T PRK15132         84 GFSMMFLMYALTAAYISGAGELLASSISD----------WTGIS-MSPTA-GVLLFTLVAGGVVCVGTSSVDLFNRFLFS  151 (403)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHH----------hccCC-CChHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999999999999999999888666532          21111 01111 11111111 11111122333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC-CCcchhHHHHH
Q 020541          200 SVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKSIVRT  278 (325)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~  278 (325)
                      ..+++   ++......+.+   .+.+.-...| +.  .+  -+..++|++++||..|+++|++.+.++ |++|.+|++..
T Consensus       152 ~~ii~---~~~~~~~l~p~---~~~~~L~~~~-~~--~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~  220 (403)
T PRK15132        152 AKIIF---LVVMLALMMPH---IHKVNLLTLP-LQ--QG--LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFII  220 (403)
T ss_pred             HHHHH---HHHHHHHHHHh---cCHHHHhcCC-cc--cc--HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHH
Confidence            32211   11111111111   1111100001 00  01  267889999999999999999999988 55599999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC
Q 020541          279 SITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       279 ~~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      +..+..++|+..-..+...-+.+
T Consensus       221 Gs~i~li~yl~W~~~~lg~l~~~  243 (403)
T PRK15132        221 GSAIPLVAYIFWQLATLGSIDST  243 (403)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHH
Confidence            99999999999988888766533

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.66  E-value=1.6e-14  Score=132.75  Aligned_cols=241  Identities=19%  Similarity=0.216  Sum_probs=159.5

Q ss_pred             HHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHcChhHHHHHHHHH
Q 020541           47 VFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAFGGAGRALLQVCI  124 (325)
Q Consensus        47 ~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~y~~l~~~~~G~~~~~~~~~~~  124 (325)
                      ...+.++.+|+|+|+||......|.+.+++++++++.+++++++.+.|.....  +..++.+++++.+||+++.+.++.+
T Consensus        25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilY  104 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLY  104 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999988765  4578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHH
Q 020541          125 VVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLA  204 (325)
Q Consensus       125 ~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~  204 (325)
                      ++..+..+.+|.....+.+.+.+.+.          .+.... .|.....++ .+++..+.... -+.+.+++.+-+..-
T Consensus       105 ff~ly~ll~aY~~~itn~l~sfl~~q----------l~~~~~-~r~l~slif-v~~l~~iv~~G-~~~v~kv~~~Lv~~~  171 (443)
T PRK13629        105 FFAICPLLWIYGVTITNTFMTFWENQ----------LGFAPL-NRGFVALFL-LLLMAFVIWFG-KDLMVKVMSYLVWPF  171 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh----------cCcCCc-cHHHHHHHH-HHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence            99999999999977777664432211          111001 232222222 22222222222 233333333222111


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCC--CccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhh----cC-----C--Ccc
Q 020541          205 IVFVVITAGVAIVKTIDGSISMPCL--LPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE----LK-----D--PTQ  271 (325)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~----m~-----~--p~~  271 (325)
                      +..++......+.+.........+.  .|+.........+..++|+.++||..|+.+|+....    .+     |  ++|
T Consensus       172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k  251 (443)
T PRK13629        172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK  251 (443)
T ss_pred             HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence            1111111111111111011111010  011111111134678899999999999999999777    53     3  458


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541          272 IKSIVRTSITLCSTVYITTSFFGLLLFGD  300 (325)
Q Consensus       272 ~~~~~~~~~~~~~~~y~~~g~~gy~~fG~  300 (325)
                      .+|++..+..+..++|+..-+.+-..-++
T Consensus       252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~  280 (443)
T PRK13629        252 CSQIISRASMLMVAVVMFFAFSCLFTLSP  280 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            88999999999999999999988887763

>TIGR00814 stp serine transporter

Probab=99.66  E-value=1.6e-14  Score=133.32  Aligned_cols=238  Identities=20%  Similarity=0.189  Sum_probs=164.6

Q ss_pred             HHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHcChhHHHHHHHH
Q 020541           46 AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAFGGAGRALLQVC  123 (325)
Q Consensus        46 ~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~y~~l~~~~~G~~~~~~~~~~  123 (325)
                      =.+.+.++++|+|+|++|....+.||+..++..+++..+.+++.+++.|.....  +..++.+++++.+||+++++.++.
T Consensus         8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l   87 (397)
T TIGR00814         8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL   87 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence            467889999999999999998899999999999999999999999999986544  468999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHH
Q 020541          124 IVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGL  203 (325)
Q Consensus       124 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~  203 (325)
                      .+++.+..+.+|....++.+.+.+.+.          ...+ -+.+. ...++ +++.+-.......+.+.+++.+.+..
T Consensus        88 Y~~~~~~i~~aY~~~~~~~~~~fl~~~----------~~~~-~p~~~-i~~li-lv~il~~iv~~G~~~i~r~~~il~~~  154 (397)
T TIGR00814        88 YFFAIYPILLIYSVAITNDSASFLVNQ----------LGTA-PPLRG-LLSLA-LILILVAIMSFGEKLLFKIMGPLVFP  154 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCC-CcHHH-HHHHH-HHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence            999999999999988888775444321          1100 01121 11111 11222223334555556665555432


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHH----hhcCC----CcchhHH
Q 020541          204 AIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIE----NELKD----PTQIKSI  275 (325)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~----~~m~~----p~~~~~~  275 (325)
                      .+..+.......+.   +.+.++-...|...  ..+.++..+++..++||.+|+.+|+..    ++.+|    ++|.+|+
T Consensus       155 ~ii~l~~l~~~lip---~~~~~~L~~~p~~~--~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~  229 (397)
T TIGR00814       155 LVLILVLLSLYLIP---HWNGANLTTFPSFN--GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRI  229 (397)
T ss_pred             HHHHHHHHHHHHHH---HcCHHHHhcCCccc--chHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHH
Confidence            22222222222111   11111111122111  234678899999999999999999997    34442    3488899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541          276 VRTSITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       276 ~~~~~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      +..+..+..++|+..-+.+....+++
T Consensus       230 i~~~~~i~~~~y~~~~~s~~~~l~~~  255 (397)
T TIGR00814       230 MKGASLILVATVMFFVFSCVLSLSPA  255 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            99999999999999999999888754

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=99.62  E-value=5.8e-14  Score=129.18  Aligned_cols=239  Identities=17%  Similarity=0.257  Sum_probs=168.8

Q ss_pred             CCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHH
Q 020541           39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA  118 (325)
Q Consensus        39 ~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~  118 (325)
                      ++.|.+|.++.++++++|+|++.+|....+.+-..+++..++.+++......++.+..++.+..+..+..++++||+.++
T Consensus         1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~   80 (359)
T TIGR00912         1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR   80 (359)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence            46789999999999999999999998877755557888889999999999999999999988889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHH
Q 020541          119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA  198 (325)
Q Consensus       119 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~  198 (325)
                      ++.+...++............++.+...+              -+    ..+.....+.+++..-....+.++...+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------l~----~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~  142 (359)
T TIGR00912        81 LLSILFILYFFLIAAYLIRIFADFIKTYL--------------LP----RTPIIVIIILIIIVSIYIVRKGIEVLLRTAE  142 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cC----CCCHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            99999888877776666666666652211              11    1111122222222333334566777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhh-hhhhhhhhhhchhHHHhhcCCCcchhHHHH
Q 020541          199 LSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFP-VLVTAYICHHNIHPIENELKDPTQIKSIVR  277 (325)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-i~~faf~~~~~~~~i~~~m~~p~~~~~~~~  277 (325)
                      +...+.+...++  ......  ....+..+..|-.+  .++.+...+.- ...++|.+.........+++||+|.+|+..
T Consensus       143 i~~~~~i~~~~~--il~~~~--~~~~~~~~l~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~  216 (359)
T TIGR00912       143 ILLIIFLILFIL--VLILLA--PKLGNIKNLLPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSII  216 (359)
T ss_pred             HHHHHHHHHHHH--HHHHHh--cccccHHHccCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHH
Confidence            665433222111  111111  11111222334332  23344444443 778999999998999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC
Q 020541          278 TSITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       278 ~~~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      .+..++.++|....+.....+|.+
T Consensus       217 ~~~~~~~~ly~~~~~~~i~~lg~~  240 (359)
T TIGR00912       217 KAIIIGVLLYILTTFVSISVFGGN  240 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHheecHH
Confidence            999999999999999999999854

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.52  E-value=2.7e-12  Score=116.23  Aligned_cols=236  Identities=13%  Similarity=0.167  Sum_probs=177.6

Q ss_pred             CCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHH
Q 020541           40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRAL  119 (325)
Q Consensus        40 ~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~  119 (325)
                      |.|..|....+..+++|+|++.+|....+.+- .|++..++.+........+..+..++.+.++..|..++.+|||.+++
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i   79 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI   79 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence            57899999999999999999999988766552 77888888888888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHH
Q 020541          120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL  199 (325)
Q Consensus       120 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~  199 (325)
                      +.+...++.+......+...++.+...+                  ....+........+++.-....+.++.+.+.+.+
T Consensus        80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~------------------lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~  141 (320)
T PF03845_consen   80 INLLYILYFLLISALVLREFSEFIKTYL------------------LPETPIWVIILLFLLVAAYAARKGIEVIARVAEI  141 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999888888888888774321                  1112222233333344445567788888886665


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcchhHHHHHH
Q 020541          200 SVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTS  279 (325)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~  279 (325)
                      .....++..+.....   .  ..+.+..+..|-.+  .++.++..+.....+.|.+......+...+++|+|.+|....+
T Consensus       142 ~~~~~~i~~~~i~~~---~--~~~~~~~~l~P~~~--~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~  214 (320)
T PF03845_consen  142 LFPIFLILLLLILLL---S--IPNIDWDNLLPVLE--SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIA  214 (320)
T ss_pred             HHHHHHHHHHHHHHH---h--cccCCHHHeeCccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            553333322222211   1  12233334445332  4556777777778888988888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC
Q 020541          280 ITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       280 ~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      ...+.++|...-+.....||.+
T Consensus       215 ~~~~~~~~~~~~~~~i~vfG~~  236 (320)
T PF03845_consen  215 ILISGLFLLFIIFITIGVFGPE  236 (320)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHH
Confidence            9999999999999999999965

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK10655 potE putrescine transporter; Provisional

Probab=99.50  E-value=1.1e-11  Score=117.19  Aligned_cols=242  Identities=14%  Similarity=0.106  Sum_probs=150.4

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~  115 (325)
                      ++|+.+.++.+...+++++|+|++.+|..+.+.|- .+++..++++++.........|...+. +....-..+++.+||+
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~   82 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS   82 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence            57889999999999999999999999988888775 567778888888888888888877654 3334456678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      ..++..+...+.......++.....+++...++.              . .+.....+....++.++-....+..+...+
T Consensus        83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~--------------~-~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~  147 (438)
T PRK10655         83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGA--------------T-LSPVQICLATIGVLWLCTVANFGGARITGQ  147 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------c-cchHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            9999999887766655555444444555333221              0 000111111111111111112223333333


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 020541          196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS  274 (325)
Q Consensus       196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~  274 (325)
                      +..+.....+..+++.+...... .+.+...+...|.  ..+.+.++..++....|+|.|.+......+|+|||+ +.||
T Consensus       148 i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr  224 (438)
T PRK10655        148 ISSVTVWGVIIPVVGLSIIGWFW-FSPSLYVAAWNPH--HLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI  224 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCcccccCCcCcc--CCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH
Confidence            33333322222112212111121 1211111111111  112234567778888999999999999999999998 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 020541          275 IVRTSITLCSTVYITTSFFGLLL  297 (325)
Q Consensus       275 ~~~~~~~~~~~~y~~~g~~gy~~  297 (325)
                      ++..+..+..++|++........
T Consensus       225 Ai~~~~~~~~~~Y~l~~~~~~~~  247 (438)
T PRK10655        225 AVLGGTLGAAVIYIVSTNVIAGI  247 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999887665543

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.47  E-value=1.6e-11  Score=115.90  Aligned_cols=242  Identities=13%  Similarity=0.053  Sum_probs=149.6

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~~  115 (325)
                      ++|+.+.++.+...+++++|+|++.+|...++.|-. .++..+++++.......+..|...+.+. ...-+.+++ +||+
T Consensus         3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~   80 (435)
T PRK10435          3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA   80 (435)
T ss_pred             CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence            789999999999999999999999999888887753 5667777777777778888888776643 343344566 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      ..+...+...+..+....++.....+++...++..           ..+ .  ....+. +.++.++-+...+..+...+
T Consensus        81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----------~~~-~--~~~~~~-~~i~~~~~~ln~~gvk~~~~  145 (435)
T PRK10435         81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----------NDP-I--PAGIAC-IAIVWVFTFVNMLGGTWVSR  145 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------CCh-H--HHHHHH-HHHHHHHHHHHHHhHHHHHH
Confidence            99999887776555445555455555554333211           000 0  011111 11111111122233333444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 020541          196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS  274 (325)
Q Consensus       196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~  274 (325)
                      +..+..++.++.++..+...+.. .+.....++..+  ....++.++..++....|+|.|.+.+....+|+|||+ +.||
T Consensus       146 i~~i~~~~~li~~~~~~i~g~~~-~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr  222 (435)
T PRK10435        146 LTTIGLVLVLIPVVGTAIVGWHW-FDAATYAANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL  222 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-cCHHhhcccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH
Confidence            43333322111111111111111 111100011111  1113456788889999999999999999999999997 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 020541          275 IVRTSITLCSTVYITTSFFGLLLF  298 (325)
Q Consensus       275 ~~~~~~~~~~~~y~~~g~~gy~~f  298 (325)
                      ++..+..++.++|++..+......
T Consensus       223 Ai~~~~~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        223 ATMLGTGLAGIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999988765444

>PRK10249 phenylalanine transporter; Provisional

Probab=99.42  E-value=6e-11  Score=112.60  Aligned_cols=242  Identities=12%  Similarity=0.054  Sum_probs=151.8

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~  114 (325)
                      -+|+.+.++..+..++.++|+|++..| .+.+++|- ..++..++.+++.......+.|...+.+ ..+.-..+++.+|+
T Consensus        19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~   97 (458)
T PRK10249         19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP   97 (458)
T ss_pred             hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence            568899999999999999999999998 66667775 4777888889999999999999887763 44677788999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..+++++...+.............+..+...+++                .  ....+.+. +++++-....+..+..+
T Consensus        98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------~--~~~~~~~~-~~~l~~~lN~~gv~~~~  158 (458)
T PRK10249         98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----------------V--PTWIWAAA-FFIIINAVNLVNVRLYG  158 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----------------C--cHHHHHHH-HHHHHHHHHHhcchhhh
Confidence            99999999888776655555555555555322210                0  01111111 11111112222333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCC-C--CC-CCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCC
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSI-S--MP-CLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP  269 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p  269 (325)
                      ++..+....-+..+++.++..+.....+.. +  .. +.+++.. ...++.++..++....|+|.|.+.+....+|+|||
T Consensus       159 ~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P  238 (458)
T PRK10249        159 ETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDP  238 (458)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH
Confidence            333222211111111111111111111110 0  00 1111000 01345567888999999999999999999999999


Q ss_pred             c-chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020541          270 T-QIKSIVRTSITLCSTVYITTSFFGLLLF  298 (325)
Q Consensus       270 ~-~~~~~~~~~~~~~~~~y~~~g~~gy~~f  298 (325)
                      + +.||++..+.....++|+..........
T Consensus       239 ~k~iPrai~~~~~~~~~~y~~~~~~~~~~~  268 (458)
T PRK10249        239 EKSIPKAVNQVVYRILLFYIGSLVVLLALY  268 (458)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence            9 7899999999999999987655544433

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.42  E-value=8.7e-11  Score=112.02  Aligned_cols=248  Identities=10%  Similarity=0.067  Sum_probs=153.0

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHcC
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELG-LIPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAFG  113 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G-~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~--~~y~~l~~~~~G  113 (325)
                      ++|+.|.+++++..+++++|+|++.+|....+.| -...++..++.++..........|...+.++  ...-+..++.+|
T Consensus         5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G   84 (473)
T TIGR00905         5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG   84 (473)
T ss_pred             cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence            4678999999999999999999999997776544 3334566777777777778888888877655  334456799999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541          114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l  193 (325)
                      |+..++.++...+........+.....+.+...++..           ...  .........+.+++++-....+..+..
T Consensus        85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-----------~~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~  151 (473)
T TIGR00905        85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-----------GSG--NPVPSILGASVLLWVFTFLVLRGVRQA  151 (473)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------cCC--CcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            9999999998877666556666655555554443310           000  001111111111111222233344444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccc--cchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcc
Q 020541          194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEI--SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ  271 (325)
Q Consensus       194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~  271 (325)
                      .++..+...+.+..+++.+...+.. .+.+....+..+..  .....+..+..++....++|.|.+......+|+||+++
T Consensus       152 ~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~  230 (473)
T TIGR00905       152 AFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSD  230 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc
Confidence            4444444322222211211111111 12111000111110  00123456777888899999999999999999999559


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020541          272 IKSIVRTSITLCSTVYITTSFFGLLLF  298 (325)
Q Consensus       272 ~~~~~~~~~~~~~~~y~~~g~~gy~~f  298 (325)
                      .||++..+..++.++|++.........
T Consensus       231 iPrai~~~~~i~~~~Yil~~~~~~~~~  257 (473)
T TIGR00905       231 VGKATVLGTLGALVIYILITLLSLGVL  257 (473)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999998887655433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.42  E-value=1.2e-10  Score=111.06  Aligned_cols=244  Identities=11%  Similarity=0.026  Sum_probs=147.4

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~  114 (325)
                      -+|+.+.++.....++.++|+|++..| .+.+.+|-...++..++.+++.......+.|...+.+ ...+-..+++.+||
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~   91 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGP   91 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence            578899999999999999999999888 5667778544577788888888888888888877653 34566778899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..+++++...+.....+.......+..+....++             .    .......++. +++. +...+..+...
T Consensus        92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~----~~~~~~~~~~-~~~~-~in~~gvk~~~  152 (471)
T PRK11387         92 ATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-------------V----PVWPWCLLFC-ALIF-GLNVVSTRFFA  152 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------C----cHHHHHHHHH-HHHH-HHHHHhHHHHH
Confidence            99999999888776655544444444333211110             0    0111111111 1111 11222233333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCCCCCCcccc--c--hhhhhhhhhhhhhhhhhhhhhhchhHHHhhc
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTID----GSISMPCLLPEIS--K--QASFWKLFTTFPVLVTAYICHHNIHPIENEL  266 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~--~--~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m  266 (325)
                      +...+...+-++.++..+...+.....    .+........++.  .  .....++..++....|+|.|.+.+....+|+
T Consensus       153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~  232 (471)
T PRK11387        153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET  232 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence            322222111111111111111111110    0000000000111  0  1123456777788899999999999999999


Q ss_pred             CCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541          267 KDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG  299 (325)
Q Consensus       267 ~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG  299 (325)
                      |||+ +.||++..+......+|++..+......+
T Consensus       233 knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p  266 (471)
T PRK11387        233 ENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIP  266 (471)
T ss_pred             cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            9999 78999999999999999998776554444

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.41  E-value=1.1e-10  Score=110.43  Aligned_cols=243  Identities=13%  Similarity=0.098  Sum_probs=145.4

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~~  115 (325)
                      ++|+.+.++++...++.++|+|++.+|....+.|. ..+...++.++........+.|.....+. ...-.-+++.+||+
T Consensus         6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~   84 (445)
T PRK10644          6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF   84 (445)
T ss_pred             cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence            67899999999999999999999999987777663 34555666666666677777887766533 23334478899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      ..++.++...+.......+......+++...++.           ....+   .. .+....++.++-.......+...+
T Consensus        85 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~-~~~~~~~~~~~~~ln~~gvk~~~~  149 (445)
T PRK10644         85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----------LKDPL---VL-TITCVVVLWIFVLLNIVGPKMITR  149 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCCcH---HH-HHHHHHHHHHHHHHHHhchHHHHH
Confidence            9999998877765544444443444444222211           00010   01 111111111111112223333444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 020541          196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS  274 (325)
Q Consensus       196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~  274 (325)
                      +..+...+.++.+++.+...+.. .+++...+. ++ ......+..+..++....|+|.|.+......+|+|||+ +.||
T Consensus       150 i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPr  226 (445)
T PRK10644        150 VQAVATVLALIPIVGIAVFGWFW-FRGETYMAA-WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI  226 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCchhccCC-cc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhH
Confidence            43333322222111111111111 121110111 11 11122345666778888999999999999999999998 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 020541          275 IVRTSITLCSTVYITTSFFGLLLF  298 (325)
Q Consensus       275 ~~~~~~~~~~~~y~~~g~~gy~~f  298 (325)
                      ++..+..+.+++|++..+.....-
T Consensus       227 ai~~s~~i~~v~Y~l~~~~~~~~~  250 (445)
T PRK10644        227 ATIGGVLIAAVCYVLSSTAIMGMI  250 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999988755444

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.41  E-value=8.6e-11  Score=111.46  Aligned_cols=241  Identities=13%  Similarity=0.124  Sum_probs=154.5

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~  114 (325)
                      .+|+.+.++..+..+++++|+|++..| .+.+.+|- .+++..++.+++......++.|...+. ...+.-+.+++.+||
T Consensus        10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~   88 (452)
T TIGR01773        10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGR   88 (452)
T ss_pred             HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence            679999999999999999999999999 77878885 467788888888888899999988765 345677889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..++.++...+.....+.+.....++.+...+++                . .......++  +.+.-.......+...
T Consensus        89 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~-~~~~~~~~~--~~~~~~~n~~gv~~~~  149 (452)
T TIGR01773        89 WAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----------------I-PLWLFSLIL--TIVLTLTNLYSVKSYG  149 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------C-cHHHHHHHH--HHHHHHHHHHhcchhh
Confidence            99999999998887777776666666666332211                0 111111111  1111111222333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCC---CCCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTID--GSISM---PCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKD  268 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~  268 (325)
                      ++..+..++.++.+++.++..+.....  ...+.   .+..+... ...++.++..++....|+|.|.+......+|+||
T Consensus       150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~  229 (452)
T TIGR01773       150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN  229 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence            333322211111111111111111111  11000   01111000 0123456888899999999999999999999999


Q ss_pred             Cc-chhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020541          269 PT-QIKSIVRTSITLCSTVYITTSFFGLLL  297 (325)
Q Consensus       269 p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~  297 (325)
                      |+ +.||++..+......+|++........
T Consensus       230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~  259 (452)
T TIGR01773       230 PIKSITRATNSVIWRIIVFYLGSIFIVVAL  259 (452)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence            98 799999988888899998865544433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.41  E-value=8.7e-11  Score=111.88  Aligned_cols=239  Identities=11%  Similarity=0.089  Sum_probs=145.8

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~  114 (325)
                      -+|+.+.++.....+++++|+|++..| .+.+++|. ..++..++++++.......+.|..... ...++.+.+++.+||
T Consensus        18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~   96 (469)
T PRK11049         18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGP   96 (469)
T ss_pred             hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCc
Confidence            678899999999999999999999988 78888887 456677777887777777888876543 334567889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      ...+++++...+.......+.....+..+...+++                . .......++ . +.+-+......+...
T Consensus        97 ~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~----------------~-~~~~~~~~~-~-~~~~~iN~~g~~~~~  157 (469)
T PRK11049         97 WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD----------------L-SDWVASLAV-V-LLLLSLNLATVKMFG  157 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------C-cHHHHHHHH-H-HHHHHHHHHhHHHHH
Confidence            99999999998876544445555555554222211                0 111111111 1 111111122333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccC----CCC---CCCCCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhc
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDG----SIS---MPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENEL  266 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m  266 (325)
                      ++..+...+-+..+++.++..+.....+    +..   ..+.+++... ...+.++..++....|+|.|.+.+....+|+
T Consensus       158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~  237 (469)
T PRK11049        158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET  237 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence            3333322221111222121111111110    000   0011110000 1234568889999999999999999999999


Q ss_pred             CCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541          267 KDPT-QIKSIVRTSITLCSTVYITTSFFGL  295 (325)
Q Consensus       267 ~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy  295 (325)
                      |||+ +.||++..+.....+.|++......
T Consensus       238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        238 KDPEKSLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             cCHhhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            9999 6899998777777888876666544

>PRK10836 lysine transporter; Provisional

Probab=99.41  E-value=2e-10  Score=109.99  Aligned_cols=246  Identities=13%  Similarity=0.082  Sum_probs=144.9

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~  114 (325)
                      .+|+.+.++..+..+++++|+|++..| .+.+++|-...++..++++++....+..+.|...+.+ ....-..+++.+|+
T Consensus        13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~   92 (489)
T PRK10836         13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEE   92 (489)
T ss_pred             ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcCh
Confidence            678899999999999999999999999 6777888655688889999999999999999887764 44566677889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGD-VLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l  193 (325)
                      ...+++++...+..... .+......+ .+...+              ...  .........+.++..+-+.-.|..+..
T Consensus        93 ~~gf~~Gw~~~~~~~~~-~a~~~~a~~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~lN~~gv~~~~~~  155 (489)
T PRK10836         93 GFGFALGWNYWYNWAVT-IAVDLVAAQLVMSWWF--------------PDT--PGWIWSALFLGVIFLLNYISVRGFGEA  155 (489)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcC--------------CCC--chHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            99999988877643332 222222222 221111              100  000011111111112222222323333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCC-CCCc-cccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541          194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMP-CLLP-EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT  270 (325)
Q Consensus       194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~p-~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~  270 (325)
                      .....+..+..++.+++..........++.. ... +..+ .......+..+........|+|.|.+.+....+|+|||+
T Consensus       156 ~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~  235 (489)
T PRK10836        156 EYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA  235 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH
Confidence            3222222211111111111111111111110 000 1100 000012334455555666799999999999999999998


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541          271 -QIKSIVRTSITLCSTVYITTSFFGLLLFG  299 (325)
Q Consensus       271 -~~~~~~~~~~~~~~~~y~~~g~~gy~~fG  299 (325)
                       +.||++..++....++|++.........+
T Consensus       236 r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp  265 (489)
T PRK10836        236 KNIPRAVRQVFWRILLFYVFAILIISLIIP  265 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence             78999999999999999998776555443

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.40  E-value=8.3e-11  Score=113.01  Aligned_cols=248  Identities=15%  Similarity=0.157  Sum_probs=145.4

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHH-HHHhhChH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcC
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPA-TVKELGLI-PGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFG  113 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~-~f~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G  113 (325)
                      .+|+.+.++.+...++.++|+|++..|. +.+++|-. ..++..++++++......+..|.....+. ...-.-.++.+|
T Consensus        40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g  119 (501)
T TIGR00911        40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFG  119 (501)
T ss_pred             cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhC
Confidence            5788999999999999999999999994 55666743 22345567777777778888888776543 244445577899


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-cccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          114 GAGRALLQVCIVVN-NLGMLVVYMIIIGDVLS-GAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       114 ~~~~~~~~~~~~~~-~~g~~~~y~i~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      |+..++..+...+. ..+.+..+....++++. ..+++          + ....+...  .+.+. +++++-+......+
T Consensus       120 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~----------~-~~~~~~~~--~i~~~-~i~~~~~ln~~Gvk  185 (501)
T TIGR00911       120 PLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD----------C-EVPEWAIR--LVAVL-CVLLLTLVNCLSVK  185 (501)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------C-CCchHHHH--HHHHH-HHHHHHHHHHhhhH
Confidence            99988887765442 22333444444454431 11111          0 00001011  11111 11111112223344


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541          192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT  270 (325)
Q Consensus       192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~  270 (325)
                      ...++..+...+.+..+++.++..++....+.....+....+.. .++..++..++....|+|.|...+....+|+|||+
T Consensus       186 ~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~  265 (501)
T TIGR00911       186 WATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY  265 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch
Confidence            44444444433333222222222233222221111000000111 12345677888999999999999999999999998


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020541          271 -QIKSIVRTSITLCSTVYITTSFFGLLLF  298 (325)
Q Consensus       271 -~~~~~~~~~~~~~~~~y~~~g~~gy~~f  298 (325)
                       +.||++..+..++.++|++..+......
T Consensus       266 r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~  294 (501)
T TIGR00911       266 RTLPIAIIISMPIVTFIYVLTNIAYFTVL  294 (501)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             7899999999999999999876654444

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.39  E-value=1.5e-10  Score=110.22  Aligned_cols=247  Identities=11%  Similarity=0.086  Sum_probs=151.0

Q ss_pred             CCCcHHHHHHHHHHHhHhhhhchHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CHHHHHHHHcChh
Q 020541           39 DGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-A-TYSGVVADAFGGA  115 (325)
Q Consensus        39 ~~~s~~~~~~~l~~~~iG~giL~lP~~f~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~-~y~~l~~~~~G~~  115 (325)
                      |+.+.++.+...+++++|+|++.+|.... .+|....++..++.++.......+..|...+.++ . ..-+.+++.+||+
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~   80 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF   80 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence            57899999999999999999999996544 5564444566777788888888888888877654 2 4566689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      ..++.++...+........+.....+.+...++..           ...  ...........++..+-....+..+...+
T Consensus        81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~-----------~~~--~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~  147 (468)
T TIGR03810        81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIF-----------GGG--NNPPSIIGASVLLWCVHFLVLRGVEGAAF  147 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------cCC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            99999999887765555556555544443222210           000  01111111111111112222334444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc----cccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcc
Q 020541          196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP----EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ  271 (325)
Q Consensus       196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~  271 (325)
                      +..+.....+..+++.+...+.. .++....++.++    .......+.++..++....|+|.|.+......+|.|||++
T Consensus       148 i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~  226 (468)
T TIGR03810       148 INTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSD  226 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCccc
Confidence            44443322222222212111111 111110001010    0111123345667788899999999999999999999889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541          272 IKSIVRTSITLCSTVYITTSFFGLLLFG  299 (325)
Q Consensus       272 ~~~~~~~~~~~~~~~y~~~g~~gy~~fG  299 (325)
                      .+|++..+....+.+|++..+..+...+
T Consensus       227 ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       227 VGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999887765544

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00909 2A0306 amino acid transporter

Probab=99.39  E-value=5.9e-11  Score=111.84  Aligned_cols=248  Identities=12%  Similarity=0.093  Sum_probs=158.2

Q ss_pred             CCCCcHHHHHHHHHHHhHhhhhchHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcChh
Q 020541           38 IDGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGGA  115 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~giL~lP~~f~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~~  115 (325)
                      +|+.+.++.++..+++++|+|++.+|.... ..|. .+++..++.++.......+..|..++.+. .+.-+..++.+||+
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   80 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL   80 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence            578899999999999999999999995544 4454 45666777788887888888888876643 34556678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      ..++.++...+.....+..+....++.+...++....  .. +.+.....+....+.+..+.+++++-+...+..+...+
T Consensus        81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~  157 (429)
T TIGR00909        81 TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGL--DL-PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK  157 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cC-chhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence            9999999998888777888888888877655542100  00 11000000000111111111112222223345555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhH
Q 020541          196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKS  274 (325)
Q Consensus       196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~  274 (325)
                      +..+...+.+..+++.+....... +  .+  +..|..+  .++.++..++...+++|.+.+......+|+|||+ +.+|
T Consensus       158 ~~~v~~~~~i~~l~~~~~~~~~~~-~--~~--~~~~~~~--~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~  230 (429)
T TIGR00909       158 VNDILVVLKVAALLLFAALGAIHF-A--SN--NYTPFMP--MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK  230 (429)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhhC-c--HH--hcCCCCC--CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH
Confidence            555554333333222222222211 1  11  1111111  2345677888899999999999999999999997 7899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 020541          275 IVRTSITLCSTVYITTSFFGLL  296 (325)
Q Consensus       275 ~~~~~~~~~~~~y~~~g~~gy~  296 (325)
                      ++..+..+..++|++.......
T Consensus       231 ai~~~~~~~~v~Yil~~~~~~~  252 (429)
T TIGR00909       231 AIILSLIVVTLLYVLVAAVILG  252 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998876654

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.38  E-value=1.4e-10  Score=110.08  Aligned_cols=235  Identities=10%  Similarity=0.054  Sum_probs=148.8

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~  114 (325)
                      .+|+.+.++..+..++.++|+|++..| .+.+++|- ..++..++++++.......+.|...+. ...++-..+++.+||
T Consensus        10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~   88 (456)
T PRK10238         10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS   88 (456)
T ss_pred             hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence            689999999999999999999999999 66667775 567778888888888888888887765 344666678889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..++.++...+.......+.....++.++...++             .    .+.....+..  .+.-.......+...
T Consensus        89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~----~~~~~~~i~~--~~~~~lN~~gv~~~~  149 (456)
T PRK10238         89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------I----PTWVSAAVFF--VVINAINLTNVKVFG  149 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C----cHHHHHHHHH--HHHHHHHHHhHHHHH
Confidence            99999999999988877777777777766332211             0    0111111111  111111122233333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCC-CC---CCCCCc--cccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGS-IS---MPCLLP--EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD  268 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~p--~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~  268 (325)
                      ++..+...+.+..+++.++..+.....+. .+   ..+.++  .+. ...+.++..++....|+|.|.+......+|+||
T Consensus       150 ~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~kn  228 (456)
T PRK10238        150 EMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEADN  228 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence            33333222222211111111111111110 00   011111  111 123446667788899999999999999999999


Q ss_pred             Cc-chhHHHHHHHHHHHHHHHHHHH
Q 020541          269 PT-QIKSIVRTSITLCSTVYITTSF  292 (325)
Q Consensus       269 p~-~~~~~~~~~~~~~~~~y~~~g~  292 (325)
                      |+ +.||++..+.....+.|+..-.
T Consensus       229 P~r~iPrAi~~~~~~i~~~y~~~~~  253 (456)
T PRK10238        229 PEQSIPKATNQVIYRILIFYIGSLA  253 (456)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 7899998888888888766543

>PRK15049 L-asparagine permease; Provisional

Probab=99.37  E-value=2.5e-10  Score=109.37  Aligned_cols=245  Identities=11%  Similarity=0.087  Sum_probs=145.1

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~  114 (325)
                      -+|+.+.++..+..++.++|+|++..| .+.+.+|- .+++..++++++.......+.|.....+ ..+.-..+++.+||
T Consensus        26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~  104 (499)
T PRK15049         26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE  104 (499)
T ss_pred             hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence            568899999999999999999999998 57777785 4577788888888888889999877663 45677778999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..+++++...+.............+..+. ..+          . +..    ...+...+.. ++++-.......+...
T Consensus       105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~-~~~----------~-~~~----~~~~~~~~~~-~~l~~~iN~~gvk~~~  167 (499)
T PRK15049        105 KAAYVAGWMYFINWAMTGIVDITAVALYMH-YWG----------A-FGG----VPQWVFALAA-LTIVGTMNMIGVKWFA  167 (499)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc----------c-CCC----CcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999998887654333332323333221 000          0 000    0111111111 1111111222233333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-----Ccc-ccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCL-----LPE-ISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELK  267 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~-~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~  267 (325)
                      ++..+...+-+..++..++..+.....+...+...     ..+ ... ...+..++.++...+|+|.|...+....+|+|
T Consensus       168 ~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~k  247 (499)
T PRK15049        168 EMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECK  247 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            33332221111111111111111111111100000     000 000 12334455666778999999999999999999


Q ss_pred             CCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541          268 DPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG  299 (325)
Q Consensus       268 ~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG  299 (325)
                      ||+ +.||++..++....++|+..........+
T Consensus       248 nP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p  280 (499)
T PRK15049        248 DPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLP  280 (499)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence            999 69999999999999999887776555443

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.37  E-value=2.7e-11  Score=122.92  Aligned_cols=244  Identities=15%  Similarity=0.140  Sum_probs=156.5

Q ss_pred             CCCCCcHHHHHHHH-HHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C-CCCHHHHHHHH
Q 020541           37 GIDGASFSGAVFNL-STTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS--K-SATYSGVVADA  111 (325)
Q Consensus        37 ~~~~~s~~~~~~~l-~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~-~~~y~~l~~~~  111 (325)
                      +.++.+.+++++.. +..++|+|++.-| +...++|...+++..+++++++..++..+.+...+.  + ...| .+.++.
T Consensus        74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y-~yisra  152 (953)
T TIGR00930        74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAY-YLISRS  152 (953)
T ss_pred             CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHH
Confidence            45788999999999 9999999988555 888899988889999999999999999999988862  2 2344 455888


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       112 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      +|+.....+++...+.+...+..|.+.+++++..+++.....  +    ........+ .+.. +.++++..+ .....+
T Consensus       153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~--~----~~~~~~~~~-iia~-i~l~ll~~I-n~~Gvk  223 (953)
T TIGR00930       153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK--I----MVDPINDIR-IYGT-VTVVVLLGI-SFAGME  223 (953)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--c----ccCccccch-HHHH-HHHHHHHHH-HHhhHH
Confidence            999999999999999888889999999999887666421100  0    000000112 1111 111122112 122333


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------------CCCCccccchhhhhhhhhhhhhhhhhhhhhhc
Q 020541          192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM-------------PCLLPEISKQASFWKLFTTFPVLVTAYICHHN  258 (325)
Q Consensus       192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~  258 (325)
                      ...++..+..   ++.++.++.+.+..+.......             .+..|.+..  ...+++..++++..||.|...
T Consensus       224 ~~ak~q~vl~---vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~--~~~~f~~~~ai~F~A~tGi~a  298 (953)
T TIGR00930       224 WENKAQVLFL---VIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPG--PEGGFFSLFGIFFPSVTGILA  298 (953)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCC--cccHHHHHHHHHHHHHHHHHH
Confidence            3333333332   2111111111111011100000             011111111  111266777888889999999


Q ss_pred             hhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541          259 IHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL  295 (325)
Q Consensus       259 ~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy  295 (325)
                      ...+..|+|||+ ..|+++..++.+++++|+++.+...
T Consensus       299 gan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~  336 (953)
T TIGR00930       299 GANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFG  336 (953)
T ss_pred             HHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 8999999999999999999976433

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.35  E-value=3.7e-10  Score=107.91  Aligned_cols=237  Identities=11%  Similarity=0.054  Sum_probs=151.2

Q ss_pred             CCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC-CHHHHHHHHcCh
Q 020541           38 IDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SA-TYSGVVADAFGG  114 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~-~y~~l~~~~~G~  114 (325)
                      +|+.+.++.....++.++|+|++..| .+.+.+|-...++..++.+++.......+.|.....+ .. .|...+++.+||
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~   80 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP   80 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence            46789999999999999999999888 7777777544466788888888888888999888775 33 688899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..+++++...+.....+.+.....+..+....++                .....+.....   +++-+...+..+...
T Consensus        81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~in~~gv~~~~  141 (478)
T TIGR00913        81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK----------------VNPAVWIAIFY---VFIVIINLFGVKGYG  141 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----------------CCHHHHHHHHH---HHHHHHHHhcchHHH
Confidence            99999999998887777777776666665322110                00111111111   111111223333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----CC---Cccccch---hhhhhhhhhhhhhhhhhhhhhchhHHHh
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMP----CL---LPEISKQ---ASFWKLFTTFPVLVTAYICHHNIHPIEN  264 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~p~~~~~---~~~~~~~~~~~i~~faf~~~~~~~~i~~  264 (325)
                      ++..+...+-+..++..++..+.....+.....    ..   .+.+.+.   ..+.++..++....|+|.|.+......+
T Consensus       142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~  221 (478)
T TIGR00913       142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG  221 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence            333332211111111111111111111110000    00   0011111   1256778888889999999999999999


Q ss_pred             hcCCCc-chhHHHHHHHHHHHHHHHHHHHH
Q 020541          265 ELKDPT-QIKSIVRTSITLCSTVYITTSFF  293 (325)
Q Consensus       265 ~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~  293 (325)
                      |+|||+ +.||++..+..+..++|++..+.
T Consensus       222 E~knP~r~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       222 EAANPRKSIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             hhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998 78999999999999999997654

>PRK11021 putative transporter; Provisional

Probab=99.34  E-value=4.2e-10  Score=105.42  Aligned_cols=227  Identities=19%  Similarity=0.187  Sum_probs=141.4

Q ss_pred             cHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhHHHH
Q 020541           42 SFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAGRAL  119 (325)
Q Consensus        42 s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~~~~  119 (325)
                      +.++++...+++++|+|++.+| .+.+.+|- .+++..++.+++.........|...+.+ ....-...++.+||+..++
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~   80 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV   80 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence            6899999999999999999999 55556664 5677788888888888888888887653 3455567788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHH
Q 020541          120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL  199 (325)
Q Consensus       120 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~  199 (325)
                      .++...+.......+......+.+...++.              ..+  ....+.+... .++-+...+..+...++..+
T Consensus        81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~-~~~~~ln~~Gv~~~~~~~~~  143 (410)
T PRK11021         81 TGWLFLSVIPVGLPAALQIAAGFGQALFGW--------------SSW--QLLLAELLTL-ALLWLLNLRGASSSANLQTV  143 (410)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHcCC--------------CCc--hHHHHHHHHH-HHHHHHHHhhHHHHHHHHHH
Confidence            998887654333333333344444322211              000  1111111111 11111222333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCC-CCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHH
Q 020541          200 SVGLAIVFVVITAGVAIVKTIDGSISMPC-LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVR  277 (325)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~  277 (325)
                      ..   ++.+.+ +.. ...  .+..+..+ ..++. ...++.++..++....|+|.|.+......+|+|||+ +.||++.
T Consensus       144 ~~---~~~~~i-~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~  215 (410)
T PRK11021        144 IA---LLIVAL-VVA-IWW--AGDIKPADIPFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALM  215 (410)
T ss_pred             HH---HHHHHH-HHH-HHH--HcCCchhcCCCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHH
Confidence            22   211111 111 111  11111111 11111 113556788889999999999999999999999998 7999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020541          278 TSITLCSTVYITTSFFG  294 (325)
Q Consensus       278 ~~~~~~~~~y~~~g~~g  294 (325)
                      .+..++.++|++..+..
T Consensus       216 ~~~~~~~~lYil~~~~~  232 (410)
T PRK11021        216 IGLLLAGLVYWACTVVV  232 (410)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999987653

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.34  E-value=2.2e-10  Score=110.95  Aligned_cols=255  Identities=12%  Similarity=0.046  Sum_probs=153.9

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHH-H-HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHcC
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPAT-V-KELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA-TYSGVVADAFG  113 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~-f-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-~y~~l~~~~~G  113 (325)
                      -+|+.+.++.+...++.++|+|++.+|-. . ..+|-. .++..++.++.+...+.+..|...+.+.. +.-.-.++.+|
T Consensus        26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G  104 (557)
T TIGR00906        26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG  104 (557)
T ss_pred             hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence            57889999999999999999999999943 3 346743 56667788888888888888887765332 22223467799


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhh--hcccccch-hHHHHHHHHHHHhhcccccccc
Q 020541          114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEW--FGQHWWTT-RFTLLLLTTLFVFLPLISFRRV  190 (325)
Q Consensus       114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~i~~~~i~~pl~~~~~l  190 (325)
                      +...+++++..++.......+.....++++..++.....  ......  ........ ......++  ++++-....+..
T Consensus       105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~--~~~~~~~~~~~~~l~~~~~~~a~~i--i~l~~~ln~~Gi  180 (557)
T TIGR00906       105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIG--QFRRTYFKLNYDGLAEYPDFFAVCL--ILLLAVLLSFGV  180 (557)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccccCCcccccchHHHHHH--HHHHHHHHHhch
Confidence            999999999998877766666555556555444321000  000000  00000001 11111111  112222233455


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541          191 DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC--LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD  268 (325)
Q Consensus       191 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~  268 (325)
                      +..+++..+...+.+..+++.++..+......+.....  ..+.+. ..++.+++.+.....|+|.|...+....+|+||
T Consensus       181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~kn  259 (557)
T TIGR00906       181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN  259 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHhHHhccC
Confidence            55555555544333332222222222221111110000  000111 123457888889999999999999999999999


Q ss_pred             Cc-chhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020541          269 PT-QIKSIVRTSITLCSTVYITTSFFGLLL  297 (325)
Q Consensus       269 p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~  297 (325)
                      |+ +.||++..++.+++++|+++.+.-...
T Consensus       260 P~r~iP~aii~sl~i~~vlY~lv~~~l~~~  289 (557)
T TIGR00906       260 PQRAIPIGIVTSLLVCFVAYFLMSAALTLM  289 (557)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99 699999999999999999998765443

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.33  E-value=1e-09  Score=104.23  Aligned_cols=238  Identities=14%  Similarity=0.119  Sum_probs=145.7

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~  114 (325)
                      .+|+.+.++.++..++.++|+|++.+| .+.+.+|- .+++..++.+++.......+.|...+.+ ..+.-..+++.+||
T Consensus         7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~   85 (457)
T PRK10580          7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGP   85 (457)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc
Confidence            568899999999999999999999999 55666775 4688888888898999999999887664 34555678999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..+++++...+.............+..+...++              ...   ......+.  +++.-....+..+...
T Consensus        86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~--~~l~~~ln~~gv~~~~  146 (457)
T PRK10580         86 LAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP--------------TVP---HWIWVLSV--VLIICAVNLMSVKVFG  146 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCC---hHHHHHHH--HHHHHHHHHccchhHH
Confidence            9999999988776655444444444544422221              100   11111111  1111112222333333


Q ss_pred             hhHHHHHHHHHHHH--HHHHH--HHHHHhccCCCCC--CCCCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC
Q 020541          195 YTSALSVGLAIVFV--VITAG--VAIVKTIDGSISM--PCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELK  267 (325)
Q Consensus       195 ~~s~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~--~~~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~  267 (325)
                      ++..+...+.+..+  ++.++  +......+...+.  .+.+++-.. ..++.++..++....|+|.|.+......+|+|
T Consensus       147 ~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~k  226 (457)
T PRK10580        147 ELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAK  226 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhc
Confidence            33332221111111  11111  1111111110000  011110000 12345677888899999999999999999999


Q ss_pred             CCc-chhHHHHHHHHHHHHHHHHHHHHH
Q 020541          268 DPT-QIKSIVRTSITLCSTVYITTSFFG  294 (325)
Q Consensus       268 ~p~-~~~~~~~~~~~~~~~~y~~~g~~g  294 (325)
                      ||+ +.||++..+.....++|+......
T Consensus       227 nP~k~iPrAi~~~~~~~~~~y~~~~~~~  254 (457)
T PRK10580        227 DPEKSIPRAINSVPMRILVFYVGTLFVI  254 (457)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 589999988888888887775544

>PRK10746 putative transport protein YifK; Provisional

Probab=99.31  E-value=8.7e-10  Score=104.72  Aligned_cols=244  Identities=13%  Similarity=0.096  Sum_probs=151.1

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~  114 (325)
                      .+|+.+.++..+..+++++|+|++..| .+.+.+|- ..++..++++++.......+.|..... ...++.+.+++.+||
T Consensus         8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~   86 (461)
T PRK10746          8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP   86 (461)
T ss_pred             HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence            578899999999999999999999988 77777886 456777888888888888999987765 345677889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..+++++...+.............+.+++..+++                .........+...+..+-+.-.|....+.
T Consensus        87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~----------------~~~~~~~~~~~~~~~~lN~~gv~~~~~~e  150 (461)
T PRK10746         87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE----------------MAQWIPALIAVALVALANLAAVRLYGEIE  150 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----------------CchHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999888876666666666666555322211                00001111111111111111122222222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCccc-cchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCC
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISM----PCLLPEI-SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP  269 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~-~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p  269 (325)
                      .......+..+..++ ++.+.......+...+    .+..++. ....++.++..++....|+|.+.+.+....+|+|||
T Consensus       151 ~~~~~~ki~~i~~~i-i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP  229 (461)
T PRK10746        151 FWFAMIKVTTIIVMI-VIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNP  229 (461)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh
Confidence            221111111111111 1111111111111100    0111100 001245677889999999999999999999999999


Q ss_pred             c-chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020541          270 T-QIKSIVRTSITLCSTVYITTSFFGLLLF  298 (325)
Q Consensus       270 ~-~~~~~~~~~~~~~~~~y~~~g~~gy~~f  298 (325)
                      + +.||++..++....++|+..........
T Consensus       230 ~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~  259 (461)
T PRK10746        230 QVTLRSAVGKVLWRILIFYVGAIFVIVTIF  259 (461)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence            8 8899999999999999988655544444

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.30  E-value=4.6e-11  Score=110.35  Aligned_cols=244  Identities=15%  Similarity=0.136  Sum_probs=158.9

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHH-HhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHc
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATV-KELG-LIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAF  112 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f-~~~G-~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~y~~l~~~~~  112 (325)
                      .+|+.+.+.++..+++.++|+|++..|-.. +++| ...+++..+++++++...+.+-.|.....  ...+|..+ .++|
T Consensus        10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi-~~af   88 (479)
T KOG1287|consen   10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI-SEAF   88 (479)
T ss_pred             ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH-HHHh
Confidence            689999999999999999999999999555 4555 55567778889999999999988877643  33456665 5678


Q ss_pred             ChhHHHHHHHHHHHHHHHHH-HHHHHHhhcc-cccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccccc
Q 020541          113 GGAGRALLQVCIVVNNLGML-VVYMIIIGDV-LSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRV  190 (325)
Q Consensus       113 G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l  190 (325)
                      |+...+.....-.+...... ..+.+.++++ +.+.++. +.          .+. ..++....  .++.++-+.-.-.+
T Consensus        89 g~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~----------~p~-~~~~lla~--~~l~~lt~~n~~~V  154 (479)
T KOG1287|consen   89 GPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CD----------VPR-VASKLLAA--ALLVLLTLINSFSV  154 (479)
T ss_pred             ccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CC----------Cch-HHHHHHHH--HHHHHHHHHhhhhh
Confidence            88777777666666655555 7778888887 5544431 11          010 11222211  11122222112223


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCC
Q 020541          191 DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELKDP  269 (325)
Q Consensus       191 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p  269 (325)
                      +.-.++..+...+-+..+.++++..++....+..++....+ .++ ..+..++..++-...|||.++..+=.+.+|+|||
T Consensus       155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP  233 (479)
T KOG1287|consen  155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP  233 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc
Confidence            33333333333334444444444555555555444322211 211 1233446677778899999999999999999999


Q ss_pred             c-chhHHHHHHHHHHHHHHHHHHHHHHH
Q 020541          270 T-QIKSIVRTSITLCSTVYITTSFFGLL  296 (325)
Q Consensus       270 ~-~~~~~~~~~~~~~~~~y~~~g~~gy~  296 (325)
                      + .+|+++..++.+++++|+++=+..+.
T Consensus       234 ~ktLP~Ai~isi~lvt~iYil~NvAy~~  261 (479)
T KOG1287|consen  234 RRTLPRAILISIPLVTVIYVLVNVAYFT  261 (479)
T ss_pred             cccchHHHHHhhHHHHHHHHHhHhheeE
Confidence            9 88999999999999999998775543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.25  E-value=2.5e-09  Score=101.30  Aligned_cols=240  Identities=18%  Similarity=0.113  Sum_probs=141.3

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHH-HHhhCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHc
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPAT-VKELGL-IPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAF  112 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~-f~~~G~-~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~--~~y~~l~~~~~  112 (325)
                      -+|+.+.++.+...++.++|+|++..|.. ....|- ...++..++.+++......+..|.....++  ..| .-.++.+
T Consensus         6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y-~y~~~~~   84 (445)
T PRK11357          6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADY-VYLKNAG   84 (445)
T ss_pred             ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCce-eeHHHhc
Confidence            57889999999999999999999999965 445553 335566777777777788888887765422  123 2346789


Q ss_pred             ChhHHHHHHHHHHH-HHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          113 GGAGRALLQVCIVV-NNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       113 G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      ||+..++..+.... ........+....++++....+              .... .......+  .++.+-....+..+
T Consensus        85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------------~~~~-~~~~~~~~--~~~~~~~ln~~gv~  147 (445)
T PRK11357         85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------------IDPL-LGKFIAAG--LIIAFMLLHLRSVE  147 (445)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CchH-HHHHHHHH--HHHHHHHHHHhhhh
Confidence            99999888886443 3333344455555555422111              0000 01111111  11111112233334


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-
Q 020541          192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-  270 (325)
Q Consensus       192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-  270 (325)
                      ...++..+.....+..+++.++..+.....++...+...+ ......+.++..++....|+|.+.+......+|+|||+ 
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r  226 (445)
T PRK11357        148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK  226 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc
Confidence            3334443333222222222222222211111111111111 01112245677788889999999999999999999999 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541          271 QIKSIVRTSITLCSTVYITTSFFGL  295 (325)
Q Consensus       271 ~~~~~~~~~~~~~~~~y~~~g~~gy  295 (325)
                      +.||++..++.+++++|++......
T Consensus       227 ~iP~Ai~~~~~i~~~~Y~l~~~~~~  251 (445)
T PRK11357        227 TMPRALIGSCLLVLVLYTLLALVIS  251 (445)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7799999999999999998876543

>TIGR00908 2A0305 ethanolamine permease

Probab=99.20  E-value=3.3e-09  Score=100.42  Aligned_cols=237  Identities=13%  Similarity=0.047  Sum_probs=146.0

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~  115 (325)
                      .+|+.|.++.+...++.++|......+..++++|+..-++..++.++........+.|...+.+ ....-..+++.+||+
T Consensus         5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~   84 (442)
T TIGR00908         5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW   84 (442)
T ss_pred             hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH
Confidence            5788999999999999999844456678888889865556666667777777778888777653 345556779999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      ..++..+...+........+....++++...++..                 .......++.  .++-+...+..+...+
T Consensus        85 ~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-----------------~~~~~~~~~~--~~~~~ln~~g~~~~~~  145 (442)
T TIGR00908        85 GGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-----------------PGWLAALVFY--IVFIGINILGVGEAAK  145 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------chhHHHHHHH--HHHHHHHHHHHHHHHh
Confidence            99999999988877777788888888775443210                 0111111111  1111112223333333


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc--chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 020541          196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS--KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI  272 (325)
Q Consensus       196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~  272 (325)
                      +..+...+.++.+++.+... ....+.....+....+..  ....+.+++.++...+++|.+++......+|+|||+ +.
T Consensus       146 i~~~~~~~~~~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~i  224 (442)
T TIGR00908       146 LEFVVTAVAIIALGVFIGAM-VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDI  224 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            33332211111111111110 000000000000000000  012344677888888999999999999999999998 78


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 020541          273 KSIVRTSITLCSTVYITTSFF  293 (325)
Q Consensus       273 ~~~~~~~~~~~~~~y~~~g~~  293 (325)
                      ||++..+..+...+|+.....
T Consensus       225 prai~~s~~~~~~~~~~~~~~  245 (442)
T TIGR00908       225 PRGLIGAILTLLALAAGILVV  245 (442)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888876543

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.19  E-value=3.6e-09  Score=99.63  Aligned_cols=238  Identities=16%  Similarity=0.149  Sum_probs=151.5

Q ss_pred             cHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHH
Q 020541           42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRAL  119 (325)
Q Consensus        42 s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~~  119 (325)
                      |.++.+...++.++|+|++..| .....|.. +++..++.+.+. ........|..++. +....-...++.+||+.+++
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~   79 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI   79 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence            6889999999999999999999 66666654 555555555554 56677777776643 45566677899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHH
Q 020541          120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL  199 (325)
Q Consensus       120 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~  199 (325)
                      ..+...+........+.....+.+...+..         .+.+ +  +.....+.+.. ++..-....+..+..+++..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~--~~~~~~i~~~~-~~~~~~l~~~g~~~~~~~~~~  146 (426)
T PF13520_consen   80 VGWLYWVAYILSLASVASSFASYLLSLFGP---------DLNP-S--PWPQFLIAIIL-ILLFTLLNLLGIKLSGKIQNI  146 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTTTG---------GGTC-S--HHHHHHHHHHH-HHHHHHHHHTTHHHHHHHHHH
T ss_pred             ccceeEEEeeccccccccchhhhhhhcccc---------cccc-c--cchheeeeecc-cccceEeeechhhhhhhhhhh
Confidence            999999998888888888888877444321         1100 0  01111111111 122222233344555555554


Q ss_pred             HHHHHH-HHHHHHHHHHHHHhccCCCC-----CCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCcchh
Q 020541          200 SVGLAI-VFVVITAGVAIVKTIDGSIS-----MPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIK  273 (325)
Q Consensus       200 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~~~~  273 (325)
                      ...+.+ ..+++.+...++...++..+     .+...|.     .+.....++...+|+|.|.+......+|+|| |+.+
T Consensus       147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip  220 (426)
T PF13520_consen  147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIP  220 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHH
T ss_pred             hhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccccc-hhhe
Confidence            443333 22222222233322221111     0111121     2224678889999999999999999999888 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541          274 SIVRTSITLCSTVYITTSFFGLLLFGD  300 (325)
Q Consensus       274 ~~~~~~~~~~~~~y~~~g~~gy~~fG~  300 (325)
                      |++.++..++.++|++.........++
T Consensus       221 ~ai~~~~~~~~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  221 RAIIISIIIVAIIYILFSIALLGALPD  247 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred             eecccchhHHHHHHhhhhheeeecccc
Confidence            999999999999999998887776654

...

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=99.19  E-value=5.1e-10  Score=90.92  Aligned_cols=222  Identities=15%  Similarity=0.218  Sum_probs=143.4

Q ss_pred             cHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------
Q 020541           42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-----------------------   98 (325)
Q Consensus        42 s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-----------------------   98 (325)
                      |-.-....+.|-++|+|.|+||.+|+.+||.+++.++.+.++.+..+....+|+...                       
T Consensus        13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st   92 (319)
T KOG3832|consen   13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST   92 (319)
T ss_pred             hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence            445567788999999999999999999999999999999999999999888887641                       


Q ss_pred             ----------------------------------cCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 020541           99 ----------------------------------SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS  144 (325)
Q Consensus        99 ----------------------------------~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~  144 (325)
                                                        +++.+.++++...|.|.+-.++-++++++++|.+..|...+--+.-
T Consensus        93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m  172 (319)
T KOG3832|consen   93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM  172 (319)
T ss_pred             cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence                                              1345688999999999999999999999999999999877765554


Q ss_pred             cccccCc--cCCCcc-----h----hhhc-ccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHH
Q 020541          145 GAWLNGV--HHSGVT-----E----EWFG-QHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITA  212 (325)
Q Consensus       145 ~~~~~~~--~~~~~~-----~----~~~~-~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~  212 (325)
                      ++.....  ..-|+.     +    .|-. .......++.+.++.+++.+|+.+. ++++-+++.++.......-....+
T Consensus       173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~  251 (319)
T KOG3832|consen  173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGI  251 (319)
T ss_pred             hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchh
Confidence            4322100  000110     0    0111 0001122344556666666677653 555566666655533332222222


Q ss_pred             HHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc
Q 020541          213 GVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT  270 (325)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~  270 (325)
                      ...-.+   ...+....+|   +...+-++-..++...|+|.+|.+.|.....++.+.
T Consensus       252 ~l~tmq---aeedaa~a~p---~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~  303 (319)
T KOG3832|consen  252 SLATMQ---AEEDAAAAHP---PARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD  303 (319)
T ss_pred             hhhhhh---hcccccccCC---ccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence            211111   1111111222   122344555667888999999999999887776554

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.17  E-value=9.4e-09  Score=93.94  Aligned_cols=236  Identities=15%  Similarity=0.167  Sum_probs=157.4

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL-~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~  114 (325)
                      -+|+.+.++--+.-+...||+|.+ .--.+.+.+|-- -++..+++|++...-++.+.|...++ ...++.+.+++.+|+
T Consensus        11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~   89 (462)
T COG1113          11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGP   89 (462)
T ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcc
Confidence            468889999999999999999965 666888888832 24557888889888899999977765 567999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHH-HHHHHHHhhccccccccchh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLL-LLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~i~~pl~~~~~l~~l  193 (325)
                      |..++.+....+.-...+.+-+..++.+++              .|+...   -++... .....+..+-+...|....+
T Consensus        90 ~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~--------------~WfP~v---P~Wv~al~~~~l~~~~NL~sVk~FGE~  152 (462)
T COG1113          90 WAGFLTGWTYWFFWVLVGIAELTAIGIYLQ--------------FWFPDV---PQWVFALAAVVLLLAVNLISVKVFGEL  152 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhcCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998884              333211   011111 11111222333445555555


Q ss_pred             hh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541          194 RY-TSALSVGLAIVFVVITAGVAIVKTIDGSIS---MPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKD  268 (325)
Q Consensus       194 ~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~  268 (325)
                      .+ ++.+-+ .+++.+++.-...+...+..+..   -++.+.+-. .++++.+++.++-+.+|||.+.+.+-....|-+|
T Consensus       153 EfWfAlIKV-~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~d  231 (462)
T COG1113         153 EFWFALIKV-AAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKD  231 (462)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Confidence            43 344443 33332222111111111221111   111111000 1246778999999999999999999999999999


Q ss_pred             Cc-chhHHHHHHHHHHHHHHHHHH
Q 020541          269 PT-QIKSIVRTSITLCSTVYITTS  291 (325)
Q Consensus       269 p~-~~~~~~~~~~~~~~~~y~~~g  291 (325)
                      |+ ..||+.+....=..++|+.-=
T Consensus       232 P~k~ipkAin~V~~RI~iFYvgsl  255 (462)
T COG1113         232 PEKAIPKAINSVIWRILIFYVGSL  255 (462)
T ss_pred             hhhHHHHHHhhhhHHHHHHHHHHH
Confidence            99 667887777666666665433

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.13  E-value=1.4e-08  Score=96.08  Aligned_cols=226  Identities=14%  Similarity=0.130  Sum_probs=138.1

Q ss_pred             HHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhHHHHHHHHHHHH
Q 020541           50 LSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAGRALLQVCIVVN  127 (325)
Q Consensus        50 l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~~~~~~~  127 (325)
                      .+++++|+|++..| .+.+++|. .+++..++.+++......+..|...+.+ ....-..+++.+||+..+++++...+.
T Consensus         3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~   81 (446)
T PRK10197          3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF   81 (446)
T ss_pred             eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence            35789999999999 68888886 4788888889999999999999887654 446777889999999999999999887


Q ss_pred             HHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHH
Q 020541          128 NLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVF  207 (325)
Q Consensus       128 ~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~  207 (325)
                      ............+..+..              |.+.    .....+.+.. ++++-+......+....+..+...+-+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~--------------~~~~----~~~~~~~~~~-l~~~~~lN~~gv~~~~~i~~~~~~~ki~~  142 (446)
T PRK10197         82 WVLVIPLEANIAAMILHS--------------WVPG----IPIWLFSLVI-TLALTGSNLLSVKNYGEFEFWLALCKVIA  142 (446)
T ss_pred             HHHHHHHHHHHHHHHHHh--------------cccc----CcHHHHHHHH-HHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence            665555444444443311              1110    0111111111 11111111222333333333322211221


Q ss_pred             HHHHHHHHHHHhccCCCC--C-C---CCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHH
Q 020541          208 VVITAGVAIVKTIDGSIS--M-P---CLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTS  279 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~--~-~---~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~  279 (325)
                      ++..+...+.. ..+..+  + .   +.++... ....+.++..++....|+|.|.+.+....+|+|||+ +.||++..+
T Consensus       143 li~~ii~~~~~-~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~  221 (446)
T PRK10197        143 ILAFIFLGAVA-ISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSV  221 (446)
T ss_pred             HHHHHHHHHHH-hcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHH
Confidence            11111111111 111110  0 0   1111000 013455788999999999999999999999999999 689999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020541          280 ITLCSTVYITTSFFGLL  296 (325)
Q Consensus       280 ~~~~~~~y~~~g~~gy~  296 (325)
                      +....++|++..+....
T Consensus       222 ~~~i~i~Yil~~~~~~~  238 (446)
T PRK10197        222 IWRISIFYLCSIFVVVA  238 (446)
T ss_pred             HHHHHHHHHHHHHHHhe
Confidence            99999999987766443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.07  E-value=4.8e-08  Score=92.91  Aligned_cols=249  Identities=15%  Similarity=0.128  Sum_probs=156.7

Q ss_pred             CCCCCcHHH-HHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSG-AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~-~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~  114 (325)
                      .+++.+.++ ......+.++|.|++.+|......+ ....+..++.+++.........|...+. +...+-...++.+||
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~   88 (466)
T COG0531          10 LKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGP   88 (466)
T ss_pred             cCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCc
Confidence            677888888 8899999999999999997777665 2223334555555555567777766644 333566778999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +..++..+...+.......+.....++.+...++...       .+....+   .... .......++-+.-.+..+...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~-~~~~~~~~~~~ln~~G~~~~~  157 (466)
T COG0531          89 RLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-------LLSIGPL---LIIL-IALALIALLTLLNLRGIKASA  157 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-------hhcCCch---HHHH-HHHHHHHHHHHHHHhhHHHHH
Confidence            8889999999999888888888888886655443210       0000000   1111 111111222222233444444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc-chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI  272 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~  272 (325)
                      +...+...+.++..++............. ..  ..+... ....+..+..++....++|.|.+...+..+|+|||+ +.
T Consensus       158 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i  234 (466)
T COG0531         158 KINSIITILKIIILLIFIILGLFAFGFSN-GN--LFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI  234 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc--cCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence            44444433333332222222222211111 11  111111 223344688888999999999999999999999997 77


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541          273 KSIVRTSITLCSTVYITTSFFGLLLFGD  300 (325)
Q Consensus       273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG~  300 (325)
                      ||++..+...+.++|++..+......+.
T Consensus       235 p~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         235 PRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            9999999999999999999988877764

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.95  E-value=1.2e-07  Score=88.64  Aligned_cols=240  Identities=13%  Similarity=0.089  Sum_probs=166.6

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA-TYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL-~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-~y~~l~~~~~G~  114 (325)
                      -+|+...++..+.-++..||+|++ +.-.++.++|-...++..++.|.+.+..+..+.|.....+.. ++...+.+...+
T Consensus        42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdp  121 (541)
T COG0833          42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDP  121 (541)
T ss_pred             hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCc
Confidence            458889999999999999999977 777999999998888999999999999999999988877644 499999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      -..+.+++...+.-...+..-+...+..+              ..|.... .+.-.+..+...+++.+-+.-.|......
T Consensus       122 a~GFa~gWnYw~~w~v~~~~El~aa~~vi--------------~yW~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~E  186 (541)
T COG0833         122 AFGFALGWNYWLNWAVTLPLELTAASLVI--------------QYWFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETE  186 (541)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhh--------------hhhcCCC-CChHHHHHHHHHHHHHHHHhcccccceeh
Confidence            99999999999988888888888877766              3443211 11112222222223334445566666554


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCcc-ccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-
Q 020541          195 -YTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMPCLLPE-ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-  270 (325)
Q Consensus       195 -~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~-~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-  270 (325)
                       ++|.+-++ +++.+++.-++.......... -..+.+.+ -...+.+.++...+-+..|+|.|.+.+--...|-+||+ 
T Consensus       187 fw~s~iKV~-~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K  265 (541)
T COG0833         187 FWFSSIKVL-TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK  265 (541)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh
Confidence             44555543 333322222222222111100 00111111 01124578888889999999999999999999999998 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHH
Q 020541          271 QIKSIVRTSITLCSTVYITTSF  292 (325)
Q Consensus       271 ~~~~~~~~~~~~~~~~y~~~g~  292 (325)
                      ..||++.-.+.=..++|++.-+
T Consensus       266 ~iPkAik~vfwRIl~FYi~si~  287 (541)
T COG0833         266 SIPKAIKQVFWRILLFYILSIF  287 (541)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888888876544

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=98.91  E-value=6.9e-09  Score=99.34  Aligned_cols=251  Identities=12%  Similarity=0.025  Sum_probs=169.1

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchH-HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHcC
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMAL-PATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAFG  113 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~l-P~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~--~~y~~l~~~~~G  113 (325)
                      -+|+.+.++..+.-+++++|+|++-. ..+.++.|-..-++..++.+.....+..++.|...+.+.  .++...+++..|
T Consensus        28 lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~  107 (554)
T KOG1286|consen   28 LKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVG  107 (554)
T ss_pred             hhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeC
Confidence            57889999999999999999998854 588888887777778888889999999999999888765  467777889999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541          114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l  193 (325)
                      +...++++.-.++.....+.+-+...+..++....  ....+.     ..+..+...+......+++++.+...+-....
T Consensus       108 e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~-----~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~  180 (554)
T KOG1286|consen  108 ESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGI-----LVDTVNPGGWIPDFLAFILIINLFGVLAYGEV  180 (554)
T ss_pred             cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccc-----cccCCCCCccHHHHHHHHHHHHHHHHhhccce
Confidence            99999999999999998888888888887744320  000000     00000001111122222344444444554555


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CC--CCCC--ccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCC
Q 020541          194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SM--PCLL--PEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD  268 (325)
Q Consensus       194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~--p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~  268 (325)
                      ++...+..+++.+-+++...+......+.+. ++  .+.+  |.--....+.++...+-+..|+|.|...+-...+|-||
T Consensus       181 ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kN  260 (554)
T KOG1286|consen  181 EFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKN  260 (554)
T ss_pred             eehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccC
Confidence            5555544444433333332222222122211 11  0111  10001123778899999999999999999999999999


Q ss_pred             Cc-chhHHHHHHHHHHHHHHHHHHHHH
Q 020541          269 PT-QIKSIVRTSITLCSTVYITTSFFG  294 (325)
Q Consensus       269 p~-~~~~~~~~~~~~~~~~y~~~g~~g  294 (325)
                      |+ ..|++...++...+.+|++..+.-
T Consensus       261 P~k~IP~ai~~s~~ri~~~Yi~~~~~l  287 (554)
T KOG1286|consen  261 PRKAIPKAIKQSLLRILLFYILSSIVL  287 (554)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHh
Confidence            98 889999999999999999988754

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.91  E-value=7.7e-07  Score=85.06  Aligned_cols=259  Identities=11%  Similarity=-0.030  Sum_probs=142.5

Q ss_pred             CCCCCcHHHHHHHHHHHh-HhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcC
Q 020541           37 GIDGASFSGAVFNLSTTI-VGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFG  113 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~-iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G  113 (325)
                      -+|+.|.++.+..-++.+ +++|+...+ .+..++|- ..+...++.++........+.|...+.+. ...-.-+++.+|
T Consensus        11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g   89 (475)
T TIGR03428        11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGG   89 (475)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcC
Confidence            467789999988888875 899999888 66666775 45666777788888888888888777643 344455688899


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541          114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l  193 (325)
                      |+..++.++...+................+..+.+.... .+..+++..+.. ......+.+.. +++.-+...+..+..
T Consensus        90 ~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~in~~g~k~~  166 (475)
T TIGR03428        90 EVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQI-IGEDPTLTSPSG-AANAVLLGSVL-LVLTTVINCIGVEWM  166 (475)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccCccccCCCc-hHHHHHHHHHH-HHHHHHHHHhhhhHH
Confidence            999999998888776544444444333333222110000 000000000000 00111111111 111111222233344


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-c
Q 020541          194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q  271 (325)
Q Consensus       194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~  271 (325)
                      .++..+...+.+..+++.++.......++.. .......... ......+..+.....|+|.|.+....+.+|+|||+ +
T Consensus       167 ~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~  245 (475)
T TIGR03428       167 SRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGAS-PGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRV  245 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchh
Confidence            4444333322222222222222211111100 0000000000 01123455566667899999999999999999999 7


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541          272 IKSIVRTSITLCSTVYITTSFFGLLLFGD  300 (325)
Q Consensus       272 ~~~~~~~~~~~~~~~y~~~g~~gy~~fG~  300 (325)
                      .||++..+..+..++|.+.-+......++
T Consensus       246 iPrai~~s~~i~~~~~~~~~~~~~~~~~~  274 (475)
T TIGR03428       246 APRTILTALSVSALGGGLMILGALMAAPS  274 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            89999999999888777766665554443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.82  E-value=2.5e-06  Score=82.04  Aligned_cols=247  Identities=11%  Similarity=0.130  Sum_probs=129.7

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCC--CCHHHHHHHHcC
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSRASKS--ATYSGVVADAFG  113 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~--~~y~~l~~~~~G  113 (325)
                      .+|+.|.++.+...+++++|.+  .+|.++.+.|.. +++..++.+++. ........|.....+.  ..--.-.++++|
T Consensus         5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G   81 (496)
T PRK15238          5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG   81 (496)
T ss_pred             ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence            5678999999999999999976  568888888864 444444445443 3456677787766642  455556688899


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH----hhcccccccccCccCCCcchhhhcccccchh-HHHHHHHHHHHhhcccccc
Q 020541          114 GAGRALLQVCIVVNNLGMLVVYMII----IGDVLSGAWLNGVHHSGVTEEWFGQHWWTTR-FTLLLLTTLFVFLPLISFR  188 (325)
Q Consensus       114 ~~~~~~~~~~~~~~~~g~~~~y~i~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~i~~pl~~~~  188 (325)
                      |+.+++..+................    ....+   +...     ....+.... .+.. ......+..+.++-+...+
T Consensus        82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~-~~~~~~~~~~a~~~~~~~t~vn~~  152 (496)
T PRK15238         82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFI---FGKD-----TTQTWHFLG-LNSTQVVGILAVIWMILVTFVASK  152 (496)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCcc-----hhhhhhhhc-ccchHHHHHHHHHHHHHHHHHHcc
Confidence            9988876655433322211111100    00100   0000     000000000 0111 1111111111122223345


Q ss_pred             ccchhhhhHHHHHHHHHHH-HHHHHHHHHHHhccC-CCCCCCCCccc-----cchhhhhhhhhhhhhhhhhhhhhhchhH
Q 020541          189 RVDSLRYTSALSVGLAIVF-VVITAGVAIVKTIDG-SISMPCLLPEI-----SKQASFWKLFTTFPVLVTAYICHHNIHP  261 (325)
Q Consensus       189 ~l~~l~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~p~~-----~~~~~~~~~~~~~~i~~faf~~~~~~~~  261 (325)
                      .++..+++..++..+.+.. +++.+...+.....+ ....+....++     +.+.+..++..++....|+|.|.+....
T Consensus       153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~  232 (496)
T PRK15238        153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG  232 (496)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            5555555555433211111 001111111111111 11111000000     0111123466677778999999999999


Q ss_pred             HHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541          262 IENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL  295 (325)
Q Consensus       262 i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy  295 (325)
                      ..+|+|||+ +.||++..+.....++|.+..+...
T Consensus       233 ~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~  267 (496)
T PRK15238        233 LVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWG  267 (496)
T ss_pred             HHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998 8999999999999999998755443

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.58  E-value=4.6e-07  Score=86.70  Aligned_cols=238  Identities=14%  Similarity=0.170  Sum_probs=144.8

Q ss_pred             HHHHhHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhHHHHHHHHHHHH
Q 020541           50 LSTTIVGAGIM-ALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAGRALLQVCIVVN  127 (325)
Q Consensus        50 l~~~~iG~giL-~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~~~~~~~  127 (325)
                      -+..++|+|++ ..+.+..++|....++..++.+++...+...+.|..++.+ ..++-..+++.+|+.....+++...+.
T Consensus         6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~   85 (478)
T PF00324_consen    6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLS   85 (478)
T ss_pred             eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHH
Confidence            35678999966 5568888888877788889999999999999999887764 346667788999999999999997777


Q ss_pred             HHHHHHHHHHHhhcccccc--cccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHH
Q 020541          128 NLGMLVVYMIIIGDVLSGA--WLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAI  205 (325)
Q Consensus       128 ~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~  205 (325)
                      ............+..++..  .++      . +    ..|.............+..+.+.-.|...+.........   +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~------~-~----~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~---~  151 (478)
T PF00324_consen   86 YIAAIAAEATAAGSFLQFWGYFPG------L-P----STWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIK---L  151 (478)
T ss_pred             HHHHHHhhhhhhhhhhcccccccc------c-c----ccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHh---h
Confidence            7766666666666555322  111      1 0    011000000111111112222222333333322221111   1


Q ss_pred             HHHHHHHHHH-HHHhccCCCCCC-------C---CCccc---cchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-
Q 020541          206 VFVVITAGVA-IVKTIDGSISMP-------C---LLPEI---SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-  270 (325)
Q Consensus       206 ~~~~~~~~~~-~~~~~~~~~~~~-------~---~~p~~---~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-  270 (325)
                      +.++..+... +.....+...+.       .   ..|.-   .....+.++..++...+++|.|.+......+|.|||+ 
T Consensus       152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k  231 (478)
T PF00324_consen  152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK  231 (478)
T ss_pred             hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence            1111111111 111111111101       0   01100   0112367899999999999999999999999999999 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541          271 QIKSIVRTSITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       271 ~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      +.||+...++....++|++.....-...+.+
T Consensus       232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~  262 (478)
T PF00324_consen  232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYD  262 (478)
T ss_pred             hhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            8899999999999999998888766666644

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.57  E-value=9.3e-06  Score=77.82  Aligned_cols=253  Identities=8%  Similarity=-0.024  Sum_probs=129.9

Q ss_pred             CCCCCcHHHHHHHHHHHhHh--hhhch-HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHc
Q 020541           37 GIDGASFSGAVFNLSTTIVG--AGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAF  112 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG--~giL~-lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~  112 (325)
                      -+|+.+.++.+..-+. .+|  .|+.. ++.+..++|-...++..++.+++.......+.|...+.+. .+.-.-+++++
T Consensus        10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~   88 (482)
T TIGR00907        10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLA   88 (482)
T ss_pred             eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhc
Confidence            4677888888877776 444  56543 4456767776555667888888888888888898776643 34445556666


Q ss_pred             C----hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcccccc
Q 020541          113 G----GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR  188 (325)
Q Consensus       113 G----~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~  188 (325)
                      |    +...++++....+.....+.+.....++.+...+... .. .  ..+....|   ....+. ..++.++-+....
T Consensus        89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~---~~~~i~-~~~~~~~~~in~~  160 (482)
T TIGR00907        89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT-TP-G--REYIPTRW---HIFGIM-IGIHLIHALINSL  160 (482)
T ss_pred             ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-C--CCccccCc---hhhhhH-HHHHHHHHHHHHh
Confidence            5    4556777777766666555555555555443322100 00 0  00111111   111111 1111111111122


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-----CCccccc-hhhhhhhhhhhhhhhhhhhhhhchhHH
Q 020541          189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC-----LLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPI  262 (325)
Q Consensus       189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~-~~~~~~~~~~~~i~~faf~~~~~~~~i  262 (325)
                      ..+.+.++..+...+.++.+++.++..... .....+..+     ..++... .+....+..++....|+|.+.+.....
T Consensus       161 g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~  239 (482)
T TIGR00907       161 PTKWLPRITSSAAYWSLLGFLTICITLLAC-KSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHM  239 (482)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHH
Confidence            223333333332222222222111111111 111111000     0111000 011123455556677999999999999


Q ss_pred             HhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541          263 ENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG  299 (325)
Q Consensus       263 ~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG  299 (325)
                      .+|+|||+ +.||++..+..+..+++++..+..+...+
T Consensus       240 a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       240 AEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             HHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999998 78999999988877665554444444333

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=98.48  E-value=4.3e-05  Score=73.64  Aligned_cols=234  Identities=13%  Similarity=0.094  Sum_probs=117.1

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHH--HHHHHHHHHHHhhc--CCCCHHHHHHHHc
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT--ESSIDMIMRFSRAS--KSATYSGVVADAF  112 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~--~~t~~~l~~~~~~~--~~~~y~~l~~~~~  112 (325)
                      +++|.+.++.++..+..++  ++..+| .+++.|+  +.+...+++.+.  .-.+.+..|.....  +....-.-+++++
T Consensus         2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~   76 (507)
T TIGR00910         2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTL   76 (507)
T ss_pred             CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhcc
Confidence            4567888888877776665  557888 5677783  444444554444  33566777776542  2334445578999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHH-HHHHHHHhhccccccccc
Q 020541          113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLL-LLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       113 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~i~~pl~~~~~l~  191 (325)
                      |++.+++..+...+................+...+..        +.. ..    ...... ..+.++..+-+...+..+
T Consensus        77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~--------~~~-~~----~~~~~~i~~l~i~~~~t~~n~~G~k  143 (507)
T TIGR00910        77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF--------PAL-NE----DPIIKFIAALIIFWALAFSQFGGTK  143 (507)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chh-cc----CcHHHHHHHHHHHHHHHHHHHhhhH
Confidence            9998888766666644322222111111111000000        000 00    111111 111111111122233333


Q ss_pred             hhhhhHHHHHHHHHHH-HHHHHHHHHHHhccCCCCC-C----CCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhh
Q 020541          192 SLRYTSALSVGLAIVF-VVITAGVAIVKTIDGSISM-P----CLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE  265 (325)
Q Consensus       192 ~l~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~  265 (325)
                      ...+++.++.+...+. +++.+.........+.... +    ...|++.   + .+....+....|+|.|.+......+|
T Consensus       144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~---~-~~~~~~~~~~~faf~G~E~~a~~a~E  219 (507)
T TIGR00910       144 RTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFS---K-VGTLVVFVAFIGAYMGVEASASHINE  219 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcc---c-ccHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            3333333322111111 1111111111112221110 0    1112211   1 12233344458899999999999999


Q ss_pred             cCCCc-chhHHHHHHHHHHHHHHHHHHH
Q 020541          266 LKDPT-QIKSIVRTSITLCSTVYITTSF  292 (325)
Q Consensus       266 m~~p~-~~~~~~~~~~~~~~~~y~~~g~  292 (325)
                      +|||+ ++||++..++.+..++|.+..+
T Consensus       220 ~knP~r~~PrAi~~~~i~~~~l~~l~~~  247 (507)
T TIGR00910       220 LENPGRDYPLAMILLMIAAICLDAIGGF  247 (507)
T ss_pred             ccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            99998 7999999999999999876554

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK11375 allantoin permease; Provisional

Probab=98.40  E-value=0.00019  Score=68.55  Aligned_cols=261  Identities=8%  Similarity=-0.014  Sum_probs=125.7

Q ss_pred             hhhccCCCCCcHHHHHHHHHHHhHhhhhchHH-HHH-HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 020541           32 EAHEAGIDGASFSGAVFNLSTTIVGAGIMALP-ATV-KELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVA  109 (325)
Q Consensus        32 ~~~~~~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~  109 (325)
                      +.++ ++|+.+.++-+..-....+..+.+.+- ..+ ...++..+++.+++...+...-..+......++ ..++.-+.|
T Consensus        19 pvp~-~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl~~~v~sR   96 (484)
T PRK11375         19 PKTQ-SQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-GVPFAMILR   96 (484)
T ss_pred             cCCc-cccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCChhHhHH
Confidence            3444 566666666555555444443332111 111 123455555555554444443333333333344 557888999


Q ss_pred             HHcChhHHHHHHHHHH-HHHHHHHHHHHHHhhcccccccc----cCccCCCcchhhhcccccchhHHHHHHHHHHHhhcc
Q 020541          110 DAFGGAGRALLQVCIV-VNNLGMLVVYMIIIGDVLSGAWL----NGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPL  184 (325)
Q Consensus       110 ~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl  184 (325)
                      ..||++|.++..+... +..+|=........++.+..++.    ......+-.+ ..+   .+.......++..++..++
T Consensus        97 ~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~-~~g---~~~~~~i~~~i~~~l~~~~  172 (484)
T PRK11375         97 ASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFT-LLG---LSLPGLITFLIFWLVNVGI  172 (484)
T ss_pred             HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cCC---CcHHHHHHHHHHHHHHHHH
Confidence            9999999888888874 45555445555556665543332    1111000000 011   1122223222222344444


Q ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc--ccchhhhhhhhhhhhhhhhhhh-hhhchhH
Q 020541          185 ISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPE--ISKQASFWKLFTTFPVLVTAYI-CHHNIHP  261 (325)
Q Consensus       185 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~i~~faf~-~~~~~~~  261 (325)
                      . ....+.++++..++..+..+.++......+...  +..+.....|.  .......+.+..++...+-++. ...+.|.
T Consensus       173 ~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D  249 (484)
T PRK11375        173 G-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV--GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASD  249 (484)
T ss_pred             H-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccc
Confidence            3 345566666666665443333333333333222  11111111111  0011112334444444444444 4458899


Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHhcCCC
Q 020541          262 IENELKDPTQIKSIVRTSITLCSTVYITTSFFG----LLLFGDR  301 (325)
Q Consensus       262 i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~g----y~~fG~~  301 (325)
                      ..+..|++++..+...++..+...+...+|+..    ...||+.
T Consensus       250 ~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~  293 (484)
T PRK11375        250 FTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGAD  293 (484)
T ss_pred             hhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999888666666667766666665445443    4456543

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=98.39  E-value=6e-05  Score=66.43  Aligned_cols=100  Identities=20%  Similarity=0.254  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhHhhhhchHH---HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHH
Q 020541           44 SGAVFNLSTTIVGAGIMALP---ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALL  120 (325)
Q Consensus        44 ~~~~~~l~~~~iG~giL~lP---~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~  120 (325)
                      .+-.+..+.+++|+|.=+==   .-|..-|+ .|....++++++...++..+.+..++-+..+|.|..++.+||+..++.
T Consensus         6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~   84 (349)
T COG3949           6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKII   84 (349)
T ss_pred             HHHHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHH
Confidence            34556677799999965433   23333454 478888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc
Q 020541          121 QVCIVVNNLGMLVVYMIIIGDVLS  144 (325)
Q Consensus       121 ~~~~~~~~~g~~~~y~i~~~~~l~  144 (325)
                      |+.+.+++++.+.....-.+..++
T Consensus        85 d~~iif~lf~~~vVM~AGags~~~  108 (349)
T COG3949          85 DIIIIFFLFSTAVVMLAGAGSLLE  108 (349)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHH
Confidence            999999999998887777776663

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=98.37  E-value=0.00032  Score=66.49  Aligned_cols=257  Identities=14%  Similarity=0.028  Sum_probs=139.9

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~  114 (325)
                      ++|+.+.++-+..-....+....+........  .++..+++..++...+...-..+......|+ ..++..+.|..||+
T Consensus        10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~-Gl~~~v~sR~~FG~   88 (442)
T TIGR00800        10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY-GLPFPVLSRASFGI   88 (442)
T ss_pred             ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh-CCCcchhhhhhhhh
Confidence            45555777776666666666555555544333  4566666666665555554455555555555 44666788999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +|.++..++..+...|=...-....++.+..++.......    ...+++ .+.......++...+.+++......+...
T Consensus        89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~----~~~~~~-~t~~~~~~~~i~~~l~~~~~~~~g~~~~~  163 (442)
T TIGR00800        89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGY----LHLGNG-MTTLELICFIIFWALVLVFLFFFGYKIRH  163 (442)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc----cccCCc-ccHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            9999999999999988888888888877765553210000    000000 01122222222223444433333333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhh-hhhhhchhHHHhhcCCCcchh
Q 020541          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTA-YICHHNIHPIENELKDPTQIK  273 (325)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~fa-f~~~~~~~~i~~~m~~p~~~~  273 (325)
                      +....+....... +....+...+. .+..+.....+..........+..++...+-. -..-.+.+...+.+|+|++-.
T Consensus       164 ~~~~~a~~~~~~~-~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~  241 (442)
T TIGR00800       164 LFEWLAVVPPFAA-FGMLIWALSKA-HGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAI  241 (442)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHc-CCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchH
Confidence            3444443221111 11111111111 11111011111111112334455555553322 335568889999999988767


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----cCCC
Q 020541          274 SIVRTSITLCSTVYITTSFFGLLL----FGDR  301 (325)
Q Consensus       274 ~~~~~~~~~~~~~y~~~g~~gy~~----fG~~  301 (325)
                      +...+++.........+|+.+-..    +|+.
T Consensus       242 ~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~  273 (442)
T TIGR00800       242 WGQFLALPGGFTLTCFFGILGAAAAYAAYGEP  273 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            778888888888888888888776    7754

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.28  E-value=0.00026  Score=67.76  Aligned_cols=52  Identities=4%  Similarity=0.027  Sum_probs=45.1

Q ss_pred             hhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541          248 VLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG  299 (325)
Q Consensus       248 i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG  299 (325)
                      ...++|.|.+......+|+|||+ +.||++..+..+..++|++..+.....-+
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~  254 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIP  254 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            35789999999999999999998 79999999999999999987776555444

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK12488 acetate permease; Provisional

Probab=97.82  E-value=0.012  Score=57.26  Aligned_cols=147  Identities=14%  Similarity=0.107  Sum_probs=94.4

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHcC-
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTE-SSIDMIMRFSRASKSATYSGVVADAFG-  113 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~y~~l~~~~~G-  113 (325)
                      -.|+.+++...+.+..+.++++ .+..|-...+.|+.. ....+ ...+.. .....+.+-.++.+..|..|..++-|| 
T Consensus        65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s  142 (549)
T PRK12488         65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQ  142 (549)
T ss_pred             eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCC
Confidence            3678899999999999988886 678996666777542 21111 111111 112345555677788999999999998 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541          114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l  193 (325)
                      |+.|.+..+..++..+.-....+...+..++.++              +-+    .+ ...++..+++........++..
T Consensus       143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------------gi~----~~-~~iii~~~i~~~Yt~~GGm~av  203 (549)
T PRK12488        143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------------GIS----YL-YAVVIVGALMVLYVTFGGMLAT  203 (549)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCC----HH-HHHHHHHHHHHHHHhccchhHH
Confidence            5688888887777776666666666666664332              111    11 1222333456666777788888


Q ss_pred             hhhHHHHHHHH
Q 020541          194 RYTSALSVGLA  204 (325)
Q Consensus       194 ~~~s~~~~~~~  204 (325)
                      .+...+-.++.
T Consensus       204 ~~td~iQ~~im  214 (549)
T PRK12488        204 TWVQIIKAVLL  214 (549)
T ss_pred             HHHHHHHHHHH
Confidence            88888776433

>TIGR02119 panF sodium/pantothenate symporter

Probab=97.80  E-value=0.013  Score=55.96  Aligned_cols=149  Identities=15%  Similarity=0.101  Sum_probs=93.3

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHH--HHHHH-HHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIV--LVGWL-TESSIDMIMRFSRASKSATYSGVVADAF  112 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~--~~~~~-~~~t~~~l~~~~~~~~~~~y~~l~~~~~  112 (325)
                      -.|+.+.+...+.+..+.+|++ .+..|-...+-|+........  ..+.+ ...-...+.+..++.+..|..|..++.|
T Consensus        38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ry  117 (471)
T TIGR02119        38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARY  117 (471)
T ss_pred             eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHc
Confidence            3578899999999999999986 668886666667531111100  11111 1111233444557788999999999999


Q ss_pred             Chh-HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          113 GGA-GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       113 G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      |++ .+.+..+..++.+++...+.+...+..++.++              +-     ......++..+++........++
T Consensus       118 g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------------gi-----~~~~~iii~~~iv~iYt~~GG~~  178 (471)
T TIGR02119       118 NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------------GL-----SYLTALFIFSSSVLIYTTFGGFR  178 (471)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CC-----CHHHHHHHHHHHHHHHHHhhhHH
Confidence            965 46777777777777766666666666553332              11     11122233334566667778888


Q ss_pred             hhhhhHHHHHHHH
Q 020541          192 SLRYTSALSVGLA  204 (325)
Q Consensus       192 ~l~~~s~~~~~~~  204 (325)
                      ...++..+-.++.
T Consensus       179 av~~td~iQ~~v~  191 (471)
T TIGR02119       179 AVALTDAIQGIVM  191 (471)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888776433

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>TIGR00813 sss transporter, SSS family

Probab=97.80  E-value=0.01  Score=55.58  Aligned_cols=146  Identities=12%  Similarity=0.038  Sum_probs=96.7

Q ss_pred             CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh-h
Q 020541           38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG-A  115 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~-~  115 (325)
                      .|+.+.+...+.+..+.+|++ .+..|-...+.|+. +....+...........+..+..++.+..|..|..++.||+ .
T Consensus         2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~   80 (407)
T TIGR00813         2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI   80 (407)
T ss_pred             CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence            467788889999988888875 66899666667753 22222222233334455666666777899999999999998 5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      .+.+..+..++..+......+...+..++.++              +-     ......++..++++-......++...+
T Consensus        81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~--------------gi-----~~~~~~ii~~~i~~~Yt~~GG~~av~~  141 (407)
T TIGR00813        81 LRGLSVLSLILYIFLYMSVDLFSGALLIELIT--------------GL-----DLYLSLLLLGAITILYTVFGGLKAVVW  141 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------Cc-----hHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence            66776777777777777777777777664332              11     111222333345556677778888888


Q ss_pred             hHHHHHHH
Q 020541          196 TSALSVGL  203 (325)
Q Consensus       196 ~s~~~~~~  203 (325)
                      ...+..++
T Consensus       142 Td~iQ~~i  149 (407)
T TIGR00813       142 TDTIQAVI  149 (407)
T ss_pred             HHHHHHHH
Confidence            88877643

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=97.77  E-value=0.015  Score=55.86  Aligned_cols=148  Identities=16%  Similarity=0.053  Sum_probs=89.7

Q ss_pred             CCCCCcHHHHHHHHHHHhHhh-hhchHHHHHHhhChHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 020541           37 GIDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIM---IVLVGWLTESSIDMIMRFSRASKSATYSGVVADAF  112 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~-giL~lP~~f~~~G~~~g~i~---l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~  112 (325)
                      -.|+.+.+...+.+..+.+|+ ..+..|-...+.|+......   .....+...+-...+.+..++.+..|..|+.++.|
T Consensus        39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ry  118 (483)
T PRK09442         39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARY  118 (483)
T ss_pred             eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHh
Confidence            367778899999998888877 46788855556675321111   11111111122333445567888999999999999


Q ss_pred             ChhH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          113 GGAG-RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       113 G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      |++. +.+..+...+..++.....+...+..++.++              +-   + . ....++..+++........++
T Consensus       119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------------gi---~-~-~~~iii~~~iv~iYt~~GGl~  179 (483)
T PRK09442        119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------------GI---S-Y-ETGLLIFGITVALYTAFGGFR  179 (483)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CC---C-H-HHHHHHHHHHHHHHHHhccHH
Confidence            9654 5566665666555555666666666663332              11   1 1 122233334556677788888


Q ss_pred             hhhhhHHHHHHH
Q 020541          192 SLRYTSALSVGL  203 (325)
Q Consensus       192 ~l~~~s~~~~~~  203 (325)
                      ...+...+..++
T Consensus       180 av~~TD~iQ~~i  191 (483)
T PRK09442        180 AVVLTDALQGIV  191 (483)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877643

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=97.75  E-value=0.02  Score=54.97  Aligned_cols=147  Identities=15%  Similarity=0.080  Sum_probs=101.8

Q ss_pred             CCCCCcHHHHHHHHHHHhHh-hhhchHHHHHHhhChHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 020541           37 GIDGASFSGAVFNLSTTIVG-AGIMALPATVKELGLIPGLIMIV---LVGWLTESSIDMIMRFSRASKSATYSGVVADAF  112 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG-~giL~lP~~f~~~G~~~g~i~l~---~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~  112 (325)
                      ..|+.+.+-.......+.++ -.++.+|-...+.|+...+....   ...+...+-...+.+..++.+..|..|.-++.|
T Consensus        36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf  115 (493)
T COG0591          36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARF  115 (493)
T ss_pred             cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHc
Confidence            35666777788888888888 67889997777777654444333   334444445566666666668889999999999


Q ss_pred             C-hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          113 G-GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       113 G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      | |+.|.+..++..+....-+...+...+..++..++       .            ......+....++........++
T Consensus       116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------i------------~~~~~~~~~~~~v~~Yt~~gG~~  176 (493)
T COG0591         116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------I------------SYVTGILIGALIVALYTFLGGLR  176 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------C------------CHHHHHHHHHHHHHHHHHHcChh
Confidence            9 99999999999999999888888888877633321       0            11111222234556666667777


Q ss_pred             hhhhhHHHHHH
Q 020541          192 SLRYTSALSVG  202 (325)
Q Consensus       192 ~l~~~s~~~~~  202 (325)
                      +..++..+-..
T Consensus       177 av~~Td~iqg~  187 (493)
T COG0591         177 AVVWTDFIQGL  187 (493)
T ss_pred             HHHHHHHHHHH
Confidence            77777776653

>TIGR00835 agcS amino acid carrier protein

Probab=97.74  E-value=0.0014  Score=61.12  Aligned_cols=105  Identities=13%  Similarity=0.039  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCH-----HHH
Q 020541           38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPG----LIMIVLVGWLTESSIDMIMRFSRASKSATY-----SGV  107 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g----~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y-----~~l  107 (325)
                      +++.|.+|+++....+++|+| ++.+|-+...+| -.+    ++..++.+.....-..+..+..++.+..+|     -++
T Consensus        44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi  122 (425)
T TIGR00835        44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI  122 (425)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence            345899999999999999998 999999977666 334    333333222222222333333223333336     788


Q ss_pred             HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541          108 VADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL  143 (325)
Q Consensus       108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l  143 (325)
                      -+...|||...++.++.+.+.............+.+
T Consensus       123 ~~gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~  158 (425)
T TIGR00835       123 KKGLGMRWLAVLFAVFLIASFGIGNMVQANAIASAL  158 (425)
T ss_pred             HHHhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            888888998888887733332223344444444444

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=97.64  E-value=0.0051  Score=57.60  Aligned_cols=149  Identities=16%  Similarity=0.150  Sum_probs=85.5

Q ss_pred             CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 020541           38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG  116 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~  116 (325)
                      .|+.+.+...+.+..+.+|++ ++..|-...+.|+.. ....+............+.+-.++.+..|..|.-++.||++.
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~   83 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKA   83 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCch
Confidence            467788999999999999885 678897777777643 222233333333444556666678899999999999999999


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          117 --RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       117 --~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                        +.+..+..++.........+...+..++.++              +   ++..  ...++..++++.......++...
T Consensus        84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------------g---i~~~--~~~~i~~~i~~iYt~~GGl~av~  144 (406)
T PF00474_consen   84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------------G---IPYN--TAILIVGVIVIIYTFFGGLRAVA  144 (406)
T ss_dssp             -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------T-----HH--HHHHHHHHHHHHTTCTT------
T ss_pred             hhhhhcccccchhhhhhhhccccccccchhhcc--------------c---hhhh--HHHHHHHHHHHHhhhhhhHhhhh
Confidence              6666565666666666666676676663322              1   1111  12223334555577777888888


Q ss_pred             hhHHHHHHHHHH
Q 020541          195 YTSALSVGLAIV  206 (325)
Q Consensus       195 ~~s~~~~~~~~~  206 (325)
                      +...+..++.++
T Consensus       145 ~td~iQ~~i~~~  156 (406)
T PF00474_consen  145 WTDFIQGVIMII  156 (406)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888777644333

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.62  E-value=0.002  Score=60.81  Aligned_cols=63  Identities=11%  Similarity=-0.018  Sum_probs=52.5

Q ss_pred             hhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020541          238 SFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGD  300 (325)
Q Consensus       238 ~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~  300 (325)
                      ..+.+..++-.....+.|...-.++.+|.+|++ +.||++..+..+.+++=..+-+.-.++-++
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~  313 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD  313 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            456677778888899999999999999999999 889999999888888877777766666665

>PRK09395 actP acetate permease; Provisional

Probab=97.62  E-value=0.042  Score=53.67  Aligned_cols=146  Identities=12%  Similarity=0.056  Sum_probs=89.6

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcC-h
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG-G  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G-~  114 (325)
                      -.|+.+.+...+.+..+.++++ .+..|-...+.|+..... .+-..+-......++.+-.++.+..|+.|..++-|| |
T Consensus        67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~-~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~  145 (551)
T PRK09395         67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY-SIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQG  145 (551)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCc
Confidence            4677888888899999988875 679996666677643221 111111111122344555567788999999999999 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      +.|.+..+...+..+......+...+..++.++              +-   + . ....++..+++........++...
T Consensus       146 ~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------------gi---~-~-~~~ili~~~i~~iYt~~GGm~av~  206 (551)
T PRK09395        146 PIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------------GL---N-Y-HVAVVLVGVLMMVYVLFGGMLATT  206 (551)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CC---C-H-HHHHHHHHHHHHHHHhhcchHHHH
Confidence            578887777666655555555555555553322              11   1 1 122223334556666777788888


Q ss_pred             hhHHHHHH
Q 020541          195 YTSALSVG  202 (325)
Q Consensus       195 ~~s~~~~~  202 (325)
                      +...+-.+
T Consensus       207 ~TD~iQ~i  214 (551)
T PRK09395        207 WVQIIKAV  214 (551)
T ss_pred             HHHHHHHH
Confidence            87777654

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=97.50  E-value=0.014  Score=52.84  Aligned_cols=107  Identities=16%  Similarity=0.186  Sum_probs=87.2

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMR-FSRASKSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~y~~l~~~~~G~~  115 (325)
                      +.-..+.+..+-|-..++-|+|-..=|..=.+-||.++.+=+++-+++.---.....- ...|++.++.+|++++..||+
T Consensus        48 DYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~  127 (376)
T PF02554_consen   48 DYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKR  127 (376)
T ss_pred             CCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHH
Confidence            4566788889999999999999999996668899998877666655554444444433 445788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVL  143 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l  143 (325)
                      +++++.++.++.+.....++.....+.+
T Consensus       128 ~~~lf~~f~~~~lilV~avF~~v~a~~~  155 (376)
T PF02554_consen  128 AKKLFLIFIFFLLILVIAVFADVVANTF  155 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988888888887766

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=97.45  E-value=0.065  Score=52.28  Aligned_cols=145  Identities=12%  Similarity=0.045  Sum_probs=88.3

Q ss_pred             CCCCcHHHHHHHHHHHhHhh-hhchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHcC-h
Q 020541           38 IDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIMIVLVGWLTE-SSIDMIMRFSRASKSATYSGVVADAFG-G  114 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~-giL~lP~~f~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~y~~l~~~~~G-~  114 (325)
                      .|+.+.+...+.+..+.+++ +.+..|-...+.|+..-+ ..+ ...+.+ ....++.+-.++.+..|..|..++-|| |
T Consensus        66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~-~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~  143 (549)
T TIGR02711        66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLI-YSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQR  143 (549)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCc
Confidence            57777888888888887776 578999666667753222 111 111111 223445666677788999999999997 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      ..|.+..+..++....-....+...+..++.++              +.+    .+ ...++..+++........++...
T Consensus       144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------------gi~----~~-~~iii~~~i~~~Yt~~GGm~av~  204 (549)
T TIGR02711       144 PIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------------GLN----YH-VAVVLVGILMVMYVLFGGMLATT  204 (549)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CCC----HH-HHHHHHHHHHHHHHHhhhhHHHH
Confidence            567776666666655555555666665553332              111    11 12223334555566777787878


Q ss_pred             hhHHHHHHH
Q 020541          195 YTSALSVGL  203 (325)
Q Consensus       195 ~~s~~~~~~  203 (325)
                      +...+-.++
T Consensus       205 ~td~iQ~~i  213 (549)
T TIGR02711       205 WVQIIKAVL  213 (549)
T ss_pred             HHHHHHHHH
Confidence            877777643

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PRK11017 codB cytosine permease; Provisional

Probab=97.44  E-value=0.048  Score=51.10  Aligned_cols=207  Identities=12%  Similarity=0.131  Sum_probs=104.7

Q ss_pred             hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 020541           68 ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW  147 (325)
Q Consensus        68 ~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~  147 (325)
                      ..++..+++.+++...+...-..+......|. ..++.-++|..||++|.++..+...+...|=........+..+++.+
T Consensus        38 GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~  116 (404)
T PRK11017         38 GLSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT  116 (404)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            35566666666655554444444444444444 56788999999999999999888887776655555455554443221


Q ss_pred             ccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 020541          148 LNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMP  227 (325)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (325)
                                    +.   +... .+.+.. ++..+.... ..+.++++..+...+....++........+ ..+..+..
T Consensus       117 --------------~~---~~~~-~~~i~~-~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~-~~g~~~~~  175 (404)
T PRK11017        117 --------------GL---DINL-LIVLSG-LLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVND-VGGLDGLK  175 (404)
T ss_pred             --------------CC---CHHH-HHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCchhhhh
Confidence                          10   1111 122222 233333222 233444444444432222222222111111 11101100


Q ss_pred             CCCccccchhhhhhhhhhhhhhhhhh-hhhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541          228 CLLPEISKQASFWKLFTTFPVLVTAY-ICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       228 ~~~p~~~~~~~~~~~~~~~~i~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      ...|.     +...+..++...+-.+ ..-.+.+...+..|+|++.......+..+...+...+|...-...|+.
T Consensus       176 ~~~~~-----~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~  245 (404)
T PRK11017        176 AIVPA-----EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQA  245 (404)
T ss_pred             cCCCC-----CcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            11111     1123334444333333 345678899999888776556666777777777777787776777653

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.059  Score=50.47  Aligned_cols=171  Identities=11%  Similarity=0.093  Sum_probs=97.4

Q ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhcc
Q 020541          105 SGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPL  184 (325)
Q Consensus       105 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl  184 (325)
                      -.+.+..||.+|.++..+.+.+.+.|-...-.+..++....              ..+   ++......++..+..+.-+
T Consensus        84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------------~~~---~~~~~~ili~g~l~~l~~i  146 (442)
T COG1457          84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS--------------GTG---LPVWAGILIIGVLMTLVTI  146 (442)
T ss_pred             heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc--------------CCC---CcHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999888888885311              001   1111111211111223333


Q ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCccccchhhhhhhhhhhhhhhhhh-hhhhchhHH
Q 020541          185 ISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTID-GSISMPCLLPEISKQASFWKLFTTFPVLVTAY-ICHHNIHPI  262 (325)
Q Consensus       185 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf-~~~~~~~~i  262 (325)
                      .-.|.++.+.+.+.....+...   ..+    +...+ ....+....+.   ..+..++..+++..+-.+ ..-+.....
T Consensus       147 fG~r~l~~l~~~a~~~~~~lf~---~l~----~~~~~~~~~~~~~~~~~---~~~~~~fl~a~slv~g~~~sw~~~~aDy  216 (442)
T COG1457         147 FGYRALHKLERIAVPLLLLLFL---YLL----ALLFRSKGGLDALWVKG---PTSPLSFLSALSLVIGSFASWGPYAADY  216 (442)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHH---HHH----HHHHhcccccceeeccC---CCcchhHHHHHHHHHHHHHhhhhhhhhh
Confidence            3455566666655555422221   111    11122 11111111110   122233444444333223 345566788


Q ss_pred             HhhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 020541          263 ENELKDPT--QIKSIVRTSITLCSTVYITTSFFGLLLFGDRT  302 (325)
Q Consensus       263 ~~~m~~p~--~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~~  302 (325)
                      .+.+++|+  |.-.....+......+-.++|.....+=|+..
T Consensus       217 sRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~  258 (442)
T COG1457         217 SRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD  258 (442)
T ss_pred             hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            88899888  66677778888888888889998888888765

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=97.36  E-value=0.084  Score=49.14  Aligned_cols=208  Identities=14%  Similarity=0.081  Sum_probs=114.6

Q ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541           69 LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL  148 (325)
Q Consensus        69 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~  148 (325)
                      .++..+++..++..++...-.-+......|+ ..++.-+.|..||++|.++..+...+...|=-.......++.+..+++
T Consensus        26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~  104 (386)
T TIGR02358        26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGG  104 (386)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555554444443333333333343 557888999999999999999999998888888888888888866553


Q ss_pred             cCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 020541          149 NGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC  228 (325)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (325)
                      ..          ++..    ......++..++..+.+. ...+.++++..+..++....++........   +.+.....
T Consensus       105 ~~----------~~~~----~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~  166 (386)
T TIGR02358       105 RL----------FGEE----SPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFS---KADLSELW  166 (386)
T ss_pred             Hh----------cCCC----chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhhc
Confidence            21          0100    011111122222333322 244555555555554332222222222211   11111100


Q ss_pred             CCccccchhhhhhhhhhhhhhhhh-hhhhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541          229 LLPEISKQASFWKLFTTFPVLVTA-YICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       229 ~~p~~~~~~~~~~~~~~~~i~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      ..|.   ..+   +..++...+-. -......+...+..|+|+|..+...++..+...+..++|.....+.++.
T Consensus       167 ~~~~---~~s---~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~  234 (386)
T TIGR02358       167 NRAG---DMS---FAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT  234 (386)
T ss_pred             CCCC---Ccc---HHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            0111   011   22222221111 1233458899999998888888888899999999999999887777654

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]

Probab=97.34  E-value=0.11  Score=48.93  Aligned_cols=273  Identities=16%  Similarity=0.114  Sum_probs=129.1

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~  114 (325)
                      ++|+=+.++-+..-.+...-.+.-.+-...-+.|  +...++.+++...+....+.+-.+...+ ...+|+.++|.-||-
T Consensus        37 ~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~-~gIpFpv~~RaSFGi  115 (497)
T COG1953          37 EQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSK-YGIPFPVLSRASFGI  115 (497)
T ss_pred             ccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccc-cCCCchHHHHHHHhh
Confidence            5566677665555444433333222222222233  4444444444433333322222222222 356899999999998


Q ss_pred             hHHH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          115 AGRA---LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       115 ~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      +|..   +....+.+.-+|...   -..++.+..++.....+....+........++...... +.+-++-.++..+.++
T Consensus       116 ~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F-~ifW~l~~l~~~~g~~  191 (497)
T COG1953         116 YGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICF-FIFWVLQLLVLFKGME  191 (497)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHH-HHHHHHHHHHHhcCHH
Confidence            7754   444444444444332   22333332222211111111011000111122222222 2223444456677888


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc-c-ccchhhhhhhhhhhhhhhhhhh-hhhchhHHHhhcCC
Q 020541          192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP-E-ISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKD  268 (325)
Q Consensus       192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~~~~~~~~~~~~~~i~~faf~-~~~~~~~i~~~m~~  268 (325)
                      .++++-.++..+..+.++..+.....+ ..+. ......| . .+.....+.+...+...+--|. ..-|.|...+.-|+
T Consensus       192 ~Ir~~~~~a~p~~~~~~~gl~Iw~~~~-a~g~-~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s  269 (497)
T COG1953         192 SIRKFETWAGPLVYIAMLGLAIWALVK-AGGS-SILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS  269 (497)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHh-cCCc-CccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence            999988888766655555544443333 2221 1111111 1 1112223333333322222221 56788899999888


Q ss_pred             CcchhH----HHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhhhcCCCCCCCc
Q 020541          269 PTQIKS----IVRTSITLCSTVYITTSFFGLLLFGDR--TLDDVLANFDGDLGI  316 (325)
Q Consensus       269 p~~~~~----~~~~~~~~~~~~y~~~g~~gy~~fG~~--~~~~il~n~~~~~~~  316 (325)
                      |+.-.+    .+-..+.+..++=...+..++..||+.  ...++++++.+....
T Consensus       270 ~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~  323 (497)
T COG1953         270 QKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYA  323 (497)
T ss_pred             hhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHH
Confidence            773322    333333334444455556678899998  567888888865443

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=97.34  E-value=0.0048  Score=58.46  Aligned_cols=250  Identities=9%  Similarity=0.043  Sum_probs=121.0

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~  114 (325)
                      ++|+.+.++.+..-....+....+.+-.....  .++..+++.+++..++...-..+......|+ ..+...++|..||+
T Consensus         5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl~~~v~sR~~FG~   83 (440)
T PF02133_consen    5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GLPTMVLSRASFGY   83 (440)
T ss_dssp             GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS-T
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCchhcchhccCc
Confidence            56666777777777777777766666544433  3566666666666665555444544444454 45677888999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcch-hhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTE-EWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l  193 (325)
                      +|.++..+...+...|-...-..+.++.+..+++....+....+ .....   ........+...++..+ .....++.+
T Consensus        84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~-~~~~g~~~l  159 (440)
T PF02133_consen   84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGI---ALPLWVCFFIFWLIQTL-FAIYGMKAL  159 (440)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH--------------HHHHHHHHHHHH-HHCTHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcc---hhhHHHHHHHHHHHHHH-HHhcCHHHH
Confidence            99999999999888888888888888888766643211000000 00000   01111111111112222 122334444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCccccchhhhhhhhhhhhhhhhhh-hhhhchhHHHhhcCCCcc
Q 020541          194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMPCLLPEISKQASFWKLFTTFPVLVTAY-ICHHNIHPIENELKDPTQ  271 (325)
Q Consensus       194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~i~~faf-~~~~~~~~i~~~m~~p~~  271 (325)
                      +++..+...+.....+.   ..++...+.+. +... .+.......  .+..++...+-.+ ..-.+.+...+.+|++++
T Consensus       160 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~  233 (440)
T PF02133_consen  160 RRLAVIAAPILLVVFIG---MLIWALSKAGGGPLLS-APASPSPSG--SFLAAIALVIGSWISWAPNASDYSRYAKSDTS  233 (440)
T ss_dssp             HHHHHCCHHHHHHHHHH---HHHHHHHHCT-HHHCC-S--S----S---HHHHHHHHHCCCHHHHCCCHHHHTTC--HHH
T ss_pred             HhHHhhhhHHHHhhhhh---eeEEEeecCCcchhhh-CcccchhHH--HHHHHHHHHHhhhhhhhhccccHHhhCCCCCC
Confidence            44444443222211111   11222222211 1111 010000000  1223333322222 244556789999998887


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020541          272 IKSIVRTSITLCSTVYITTSFFGLLL  297 (325)
Q Consensus       272 ~~~~~~~~~~~~~~~y~~~g~~gy~~  297 (325)
                      -.+...++..........+++.+...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~g~lg~~~  259 (440)
T PF02133_consen  234 AWWGFWLGFPGGFIPFVLVGILGAAA  259 (440)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEeehhhhHHHHHHHHHHHHHHH
Confidence            77778888877777777777766543

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=97.30  E-value=0.11  Score=50.80  Aligned_cols=146  Identities=10%  Similarity=0.060  Sum_probs=91.8

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~  115 (325)
                      -.|+.+++...+.+..+.++++ .++.|-...+.|+..-...+ -..........++.+-.+|.+..|..|.-++.||++
T Consensus        30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~  108 (552)
T TIGR03648        30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYYSN  108 (552)
T ss_pred             eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhCCC
Confidence            4688899999999999988774 77899666667753222211 111111223456667778889999999999999865


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          116 -GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       116 -~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                       .+.+..+..++....-....+...+..++.++              +.     ......++..+++........++...
T Consensus       109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------------gi-----~~~~~iii~~~i~~iYt~~GG~~aV~  169 (552)
T TIGR03648       109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------------EV-----DFETGVFIGMAIVFFYAVLGGMKGVT  169 (552)
T ss_pred             ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CC-----CHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence             56666666666666555555555565553322              11     11122223334566667777888888


Q ss_pred             hhHHHHHH
Q 020541          195 YTSALSVG  202 (325)
Q Consensus       195 ~~s~~~~~  202 (325)
                      +...+..+
T Consensus       170 ~TD~iQ~i  177 (552)
T TIGR03648       170 WTQVAQYI  177 (552)
T ss_pred             HHHHHHHH
Confidence            88877753

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=97.15  E-value=0.21  Score=46.23  Aligned_cols=74  Identities=18%  Similarity=0.140  Sum_probs=46.0

Q ss_pred             HHHHHhHhhhhchHH-HHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHH
Q 020541           49 NLSTTIVGAGIMALP-ATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIV  125 (325)
Q Consensus        49 ~l~~~~iG~giL~lP-~~f~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~  125 (325)
                      .+..-.+|+|.|-.| +.-+++|  |..+.+..++.++..-....+   +..+. ..+|.++.++ +||+...++.+.+.
T Consensus         3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~-gG~~~~l~~~-~g~~f~~lf~~~~~   77 (378)
T TIGR00796         3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALV-GGGYDSLSAR-IGKVFGILFTVILY   77 (378)
T ss_pred             HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeec-CCCHHHHHHH-hChHHHHHHHHHHH
Confidence            456678999999999 4444566  666666666666654433333   22222 3589888655 56777766666555


Q ss_pred             HH
Q 020541          126 VN  127 (325)
Q Consensus       126 ~~  127 (325)
                      +.
T Consensus        78 l~   79 (378)
T TIGR00796        78 LT   79 (378)
T ss_pred             HH
Confidence            44

transmembrane helical spanners.

>PRK15015 carbon starvation protein A; Provisional

Probab=97.10  E-value=0.04  Score=53.43  Aligned_cols=107  Identities=18%  Similarity=0.235  Sum_probs=83.6

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMR-FSRASKSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~y~~l~~~~~G~~  115 (325)
                      +.-..+.+-.+-|=..++-|+|.+.=|..=.+.||.++.+=+++-.++.---.....- ...|++.+|.++++++..||+
T Consensus        79 DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~  158 (701)
T PRK15015         79 DYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPT  158 (701)
T ss_pred             CcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHH
Confidence            3555566778888899999999999997777999999887666655543333333222 344778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVL  143 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l  143 (325)
                      ++.++.+..++.+.....++..++.+.+
T Consensus       159 ~~~lfli~i~~iliiviAvfalvvv~al  186 (701)
T PRK15015        159 AGVIALVACFMIMVIILAVLAMIVVKAL  186 (701)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888888877777666

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=96.87  E-value=0.14  Score=48.63  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=83.6

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMR-FSRASKSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~y~~l~~~~~G~~  115 (325)
                      +.-..+.+..+-|=..++-|+|.+.=|.-=.|.||.++.+=+++-.++.---...++- ...|++.+|..|++++..|+.
T Consensus        48 DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~  127 (575)
T COG1966          48 DYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRT  127 (575)
T ss_pred             ccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhh
Confidence            4667788889999999999999999998888999998877555544443322333322 334678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVL  143 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l  143 (325)
                      .+.+..+..++........+.....+.+
T Consensus       128 a~~~~~~~~l~iliiv~Avfa~vv~~~l  155 (575)
T COG1966         128 AKVFFLLLALILLILVGAVFAAVIAKLL  155 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888887777777777666

>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]

Probab=96.63  E-value=0.0044  Score=58.88  Aligned_cols=232  Identities=16%  Similarity=0.176  Sum_probs=132.5

Q ss_pred             CCCCCcHHHHHHHHHH-HhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHH
Q 020541           37 GIDGASFSGAVFNLST-TIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVADA  111 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~-~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~---~~~~y~~l~~~~  111 (325)
                      ++-+-++++.++.-.- .+.|.= .|=++|...|+|...+++++..+..++..|..=.+....+.   +...|.-+ .+.
T Consensus        26 ~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yfli-s~s  104 (643)
T KOG2083|consen   26 GPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLI-SRS  104 (643)
T ss_pred             CceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEE-Eec
Confidence            3444466665553222 222221 45788999999999999999888888887766555554443   22234333 455


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       112 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      +|+-.+--++++..+.+.-.+..|+.-++|.+.++++..       ..++      ...  +..+.+++++-++. -.++
T Consensus       105 lg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~-------s~~~------i~g--i~~vt~~ill~i~~-ag~~  168 (643)
T KOG2083|consen  105 LGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETE-------SKEM------IDG--IGSVTVLILLAINV-AGVE  168 (643)
T ss_pred             ccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc-------cHHH------hcc--hhHHHHHHHHHhhh-ccch
Confidence            677666677888888888889999999999998877532       0010      011  12222222222222 1223


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHh-cc------CCC------CCCCCCccccchhhhhhhhhhhhhhhhhhhhhhc
Q 020541          192 SLRYTSALSVGLAIVFVVITAGVAIVKT-ID------GSI------SMPCLLPEISKQASFWKLFTTFPVLVTAYICHHN  258 (325)
Q Consensus       192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~-~~------~~~------~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~  258 (325)
                      +-++..++-.   ++ +++.+...+... +.      +..      -..+..|++.+.   ..++.-++++.-+..|.-.
T Consensus       169 w~~k~q~~ll---~i-l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgila  241 (643)
T KOG2083|consen  169 WEAKLQIVLL---LI-LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILA  241 (643)
T ss_pred             hHHHHHHHHH---HH-HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhc
Confidence            3222222221   11 111111111110 10      100      011223333322   2456666777777777777


Q ss_pred             hhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHH
Q 020541          259 IHPIENELKDPT-QIKSIVRTSITLCSTVYITTSF  292 (325)
Q Consensus       259 ~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~  292 (325)
                      -..+...+++|+ ..|+....+..+.+.+|+.+-.
T Consensus       242 G~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~  276 (643)
T KOG2083|consen  242 GANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIA  276 (643)
T ss_pred             cccccCCCCCchhhcccchhhhhhhhhhhhhhhhh
Confidence            788899999999 8899999999999999966543

>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.58  E-value=0.0091  Score=57.67  Aligned_cols=251  Identities=14%  Similarity=0.137  Sum_probs=125.5

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh--hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG--IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVADA  111 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g--iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~---~~~~y~~l~~~~  111 (325)
                      ++.|.+-+..+|.-+.-.+=+-  .|=+++...++|+...+..+++...+...|..-++..+.+.   +..-|-.+ .+.
T Consensus        63 ~r~kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymI-SRs  141 (945)
T KOG1288|consen   63 NRAKLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMI-SRS  141 (945)
T ss_pred             CcccccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEE-Ecc
Confidence            3446666666555444333232  33467888889999888888888888887777666555443   22233222 333


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccc
Q 020541          112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD  191 (325)
Q Consensus       112 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~  191 (325)
                      +|+-.+--++...++.+...|..++.-+.|-+-..+....+-...........||  +.....++. .+++.+|++.. .
T Consensus       142 LGpEfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww--~fly~t~vl-~l~~~vc~lGs-a  217 (945)
T KOG1288|consen  142 LGPEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWW--RFLYTTLVL-ALCLIVCLLGS-A  217 (945)
T ss_pred             cCcccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcch--hhHHHHHHH-HHHHHHHHhhH-H
Confidence            4443333344444555555666666666665544444322221111122223454  222222111 12333333321 1


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCCcccc-----------chhh-----------------hh
Q 020541          192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMP---CLLPEIS-----------KQAS-----------------FW  240 (325)
Q Consensus       192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~-----------~~~~-----------------~~  240 (325)
                      -.++.+.+.+ +.+...+..+.++  .++.+....+   +..|...           .+.+                 ..
T Consensus       218 lfAkas~i~f-~~is~s~~si~iS--~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~  294 (945)
T KOG1288|consen  218 LFAKASNILF-VVISVSLFSIPIS--FIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYE  294 (945)
T ss_pred             HHHhhhhhhh-hHHHHHHhhhhhe--eEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCce
Confidence            2333333332 1111112221111  1222221111   1111100           0011                 12


Q ss_pred             hhhhhhhhhhhhhhhhhchhHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020541          241 KLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL  295 (325)
Q Consensus       241 ~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy  295 (325)
                      ++-..++++.-+-.|.-.--....|+|+|+ ..|+-..+++..+++.|.++.+..-
T Consensus       295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~  350 (945)
T KOG1288|consen  295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMG  350 (945)
T ss_pred             ehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhc
Confidence            455566666655555555567788999999 8899999999999999998876543

>PRK10484 putative transporter; Provisional

Probab=96.50  E-value=0.9  Score=44.12  Aligned_cols=157  Identities=8%  Similarity=0.008  Sum_probs=84.6

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~  115 (325)
                      -.|+.+++-..+.+..+.++++ .+..|-...+.|+....... ............+..-.+|.+..|..|..++.||++
T Consensus        36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~  114 (523)
T PRK10484         36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEV-TAAIALIILALIFLPRYLKSGITTIPDFLEERYDKT  114 (523)
T ss_pred             cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCch
Confidence            4688899999999998888775 66899655566754321111 111111122333444445678889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMI-IIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      .+.+......+........... ..+..+..++.-        ...++-+. ........+...++.........++...
T Consensus       115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~--------~~~~gi~~-~~~~~~~~~~~~~i~~~Yt~~GGl~aV~  185 (523)
T PRK10484        115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV--------SELLGISY-GAAIWLLVWLIGIIGAIYAVFGGLKAVA  185 (523)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------hhhcCCcH-HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            8887776655443332222111 122222111100        00111110 0011111111223456667778888888


Q ss_pred             hhHHHHHHH
Q 020541          195 YTSALSVGL  203 (325)
Q Consensus       195 ~~s~~~~~~  203 (325)
                      +...+..++
T Consensus       186 ~TD~iQ~vi  194 (523)
T PRK10484        186 VSDTINGIG  194 (523)
T ss_pred             HHHHHHHHH
Confidence            888887643

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=96.42  E-value=0.97  Score=43.49  Aligned_cols=147  Identities=15%  Similarity=0.097  Sum_probs=81.0

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCCCHHHHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR-----ASKSATYSGVVAD  110 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~-----~~~~~~y~~l~~~  110 (325)
                      -.|+.+++...+.+..+.+++. ++..|-...+.|+...+. .....+........+.+-.+     +++..|..|..++
T Consensus        34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~  112 (487)
T TIGR02121        34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN  112 (487)
T ss_pred             eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence            3677889999999988888765 567885555677643222 11111111122223322222     5678899999999


Q ss_pred             HcChhH---HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccc
Q 020541          111 AFGGAG---RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISF  187 (325)
Q Consensus       111 ~~G~~~---~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~  187 (325)
                      -||++.   +.+..+...+....-....+...+..++.++              +.+    .+ ...++..+++......
T Consensus       113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------------gi~----~~-~~iii~~~i~~~Yt~~  173 (487)
T TIGR02121       113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------------GLD----YK-TGLLIGALIIVIYTFF  173 (487)
T ss_pred             HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------Ccc----HH-HHHHHHHHHHHHHHHh
Confidence            999643   3344444444333333444444444443222              111    11 2222333456666677


Q ss_pred             cccchhhhhHHHHHHH
Q 020541          188 RRVDSLRYTSALSVGL  203 (325)
Q Consensus       188 ~~l~~l~~~s~~~~~~  203 (325)
                      ..++...+...+-.++
T Consensus       174 GGl~av~~TD~iQ~~i  189 (487)
T TIGR02121       174 GGFLAVSWTDFVQGLL  189 (487)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            7888888888777643

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=96.25  E-value=1.2  Score=42.97  Aligned_cols=147  Identities=10%  Similarity=0.068  Sum_probs=84.7

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCCCHHHHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDM-----IMRFSRASKSATYSGVVAD  110 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~-----l~~~~~~~~~~~y~~l~~~  110 (325)
                      -.|+.+.+...+.+..+.+++. .++.|-...+.|+..-+.. +...+.......+     -....++.+..|..|..++
T Consensus        38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~  116 (502)
T PRK15419         38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIA-IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG  116 (502)
T ss_pred             eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence            4688899999999999988886 5689966667786432111 1111111111112     1122234577899999999


Q ss_pred             HcChh---HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccc
Q 020541          111 AFGGA---GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISF  187 (325)
Q Consensus       111 ~~G~~---~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~  187 (325)
                      -||++   .+.+..+...+....-+...+...+..++.++              +-   +  .....++..++++.....
T Consensus       117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------------gi---~--~~~~iii~~~iv~iYt~~  177 (502)
T PRK15419        117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------------GM---S--YETALWAGAAATILYTFI  177 (502)
T ss_pred             HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CC---C--HHHHHHHHHHHHHHHHHh
Confidence            99964   34444454444444444444444455442222              11   1  112233334467777788


Q ss_pred             cccchhhhhHHHHHHH
Q 020541          188 RRVDSLRYTSALSVGL  203 (325)
Q Consensus       188 ~~l~~l~~~s~~~~~~  203 (325)
                      ..++...+...+-.++
T Consensus       178 GGl~aV~~TD~iQ~~i  193 (502)
T PRK15419        178 GGFLAVSWTDTVQASL  193 (502)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            8888888888888643

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=96.19  E-value=0.06  Score=50.06  Aligned_cols=249  Identities=15%  Similarity=0.120  Sum_probs=118.2

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCCCCHHHHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-----RASKSATYSGVVAD  110 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-----~~~~~~~y~~l~~~  110 (325)
                      +++-.|...-+...+++.+|.| +--.||...+-|-. +.+++.++..+..=--.++.|..     +.+...+|+.++. 
T Consensus         5 re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~-   82 (439)
T COG0733           5 REQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP-   82 (439)
T ss_pred             ccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc-
Confidence            4566688899999999999998 77899887776522 23333333332222233334432     2334445666654 


Q ss_pred             HcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCcc---C-CCcchhhhcccccchhHHHHHHHHHHHhhcccc
Q 020541          111 AFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVH---H-SGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS  186 (325)
Q Consensus       111 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~  186 (325)
                        +|+ ...++...++..+..+.-|.++.|=.+.-+......   + .+....++...--+..........+.++.-+..
T Consensus        83 --~~~-~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv  159 (439)
T COG0733          83 --KKK-WEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIV  159 (439)
T ss_pred             --Ccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence              232 233334434444444444444444333222211000   0 000111221110001111111111112222223


Q ss_pred             ccccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCCccccchhhhhhhhhhhhhhhhhhh-hhhchhH
Q 020541          187 FRRVD-SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM---PCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHP  261 (325)
Q Consensus       187 ~~~l~-~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~i~~faf~-~~~~~~~  261 (325)
                      .+.++ .+.+.+-+-..+..+.+   +++.++....+....   --..|+++...+..-+..++|...|+.+ +...+.+
T Consensus       160 ~~GV~~GIEk~~kimMP~Lfvl~---i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mit  236 (439)
T COG0733         160 SRGVKKGIEKANKIMMPLLFVLF---IILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMIT  236 (439)
T ss_pred             HHhHHhhHHHHHHHHHHHHHHHH---HHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33433 36666666554332222   333344444332211   1123555544445567788899999987 5566666


Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 020541          262 IENELKDPTQIKSIVRTSITLCSTVYITTSFF  293 (325)
Q Consensus       262 i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~  293 (325)
                      ..+.++|+++..+........-+.+=++.|+.
T Consensus       237 YsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~  268 (439)
T COG0733         237 YSSYLSKKSDLVSSALSIVLLNTLISLLAGLV  268 (439)
T ss_pred             HHhhcCcccchhhhHHHHHHHHHHHHHHHHHH
Confidence            67778877788776555555555555554443

>COG4147 DhlC Predicted symporter [General function prediction only]

Probab=95.66  E-value=1.9  Score=40.68  Aligned_cols=220  Identities=15%  Similarity=0.170  Sum_probs=117.8

Q ss_pred             hhhhchHHHHHHhhChHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHcCh-hHHHHHHHHHHHHHHHHH
Q 020541           56 GAGIMALPATVKELGLIPGLIMIVLVGWLTESS--IDMIMRFSRASKSATYSGVVADAFGG-AGRALLQVCIVVNNLGML  132 (325)
Q Consensus        56 G~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t--~~~l~~~~~~~~~~~y~~l~~~~~G~-~~~~~~~~~~~~~~~g~~  132 (325)
                      -++.|.++-...-.|+- |.+-+  .|...-|.  ..++.+-.|+.++.|.+|....-++. +.|.+..+.-++..+.-.
T Consensus        59 aASflGiag~I~~~GYd-G~~Y~--iG~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Yl  135 (529)
T COG4147          59 AASFLGIAGLIFISGYD-GLIYS--IGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYL  135 (529)
T ss_pred             hHhhhchhHhhhhcccc-hHHHH--HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence            34566666555455532 22211  12222222  34556677788999999998888875 556666655555555555


Q ss_pred             HHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHHH
Q 020541          133 VVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITA  212 (325)
Q Consensus       133 ~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~  212 (325)
                      ++.+.-.+..+..+++              .+.     ...+++..+++........++...|...+--++.+...++..
T Consensus       136 iaQmvGaG~li~~l~g--------------v~~-----~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~a  196 (529)
T COG4147         136 IAQMVGAGLLISLLLG--------------VPY-----HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMA  196 (529)
T ss_pred             HHHHHhhHHHHHHHhC--------------CCc-----eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            6666666666644332              110     011222333555556667778888887776654444444444


Q ss_pred             HHHHHHhccCCCC--------CCCCCcc--ccchhhhhhhhhhhhhhhhhhhhhhchhHHHhh-c--CCCcchhHHHHHH
Q 020541          213 GVAIVKTIDGSIS--------MPCLLPE--ISKQASFWKLFTTFPVLVTAYICHHNIHPIENE-L--KDPTQIKSIVRTS  279 (325)
Q Consensus       213 ~~~~~~~~~~~~~--------~~~~~p~--~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~-m--~~p~~~~~~~~~~  279 (325)
                      .....+......+        ++.+.+.  .++.....+-...++...--..+...+|++.-. -  .+-+..++...|+
T Consensus       197 i~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA  276 (529)
T COG4147         197 IMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWA  276 (529)
T ss_pred             HHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHH
Confidence            3334443221110        1110000  011111123334444444444566677766322 2  2333778899999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 020541          280 ITLCSTVYITTSFFGLLL  297 (325)
Q Consensus       280 ~~~~~~~y~~~g~~gy~~  297 (325)
                      ..+...+|+..-+.|+.+
T Consensus       277 ~~fIg~fYi~~~~ig~~A  294 (529)
T COG4147         277 TGFIGIFYILTPIIGAGA  294 (529)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998888764

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=95.56  E-value=1  Score=42.10  Aligned_cols=86  Identities=13%  Similarity=0.098  Sum_probs=54.1

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CC-----CHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK---SA-----TYSGV  107 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~---~~-----~y~~l  107 (325)
                      ++++.|.+|++..-+.+.+|+| +-...-+...+| ..++.=+.+.+++..-+-..-+....+++   .+     .-...
T Consensus        15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yy   93 (416)
T PF01235_consen   15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYY   93 (416)
T ss_pred             CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHH
Confidence            5678999999999999999998 778998987666 23444455556655555444333333321   11     12334


Q ss_pred             HHHHcC-hhHHHHHHHH
Q 020541          108 VADAFG-GAGRALLQVC  123 (325)
Q Consensus       108 ~~~~~G-~~~~~~~~~~  123 (325)
                      .++.+| ||...++.++
T Consensus        94 i~~gl~~k~la~~fai~  110 (416)
T PF01235_consen   94 IEKGLGSKWLAILFAIF  110 (416)
T ss_pred             HHHHhccchHHHHHHHH
Confidence            455555 4555566555

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=94.68  E-value=0.49  Score=43.80  Aligned_cols=79  Identities=18%  Similarity=0.142  Sum_probs=54.6

Q ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 020541           69 LGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW  147 (325)
Q Consensus        69 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~  147 (325)
                      +|.+.++.+..+..-+.+....-..+..+. ++..-..+++++.+|++|+.+..+.+.+.|+..+++.....+|.++++.
T Consensus       221 ~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~  300 (378)
T TIGR00796       221 AGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLV  300 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455445554444444444443222221111 2444588999999999999999999999999999999999999885543

transmembrane helical spanners.

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=94.31  E-value=0.4  Score=44.93  Aligned_cols=84  Identities=19%  Similarity=0.294  Sum_probs=57.2

Q ss_pred             HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541           65 TVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-RASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL  143 (325)
Q Consensus        65 ~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l  143 (325)
                      ...++|.+.+..+.++.+.+.+..+..-.... ..++..=+.+++++.+|+.|..+..+++.+.|+-.+++-....+|++
T Consensus       223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf  302 (427)
T PF05525_consen  223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYF  302 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445565555555555444443322221111 11233347889999999999999999999999999999999999999


Q ss_pred             ccccc
Q 020541          144 SGAWL  148 (325)
Q Consensus       144 ~~~~~  148 (325)
                      +++++
T Consensus       303 ~~~~~  307 (427)
T PF05525_consen  303 SELFP  307 (427)
T ss_pred             HHHhc
Confidence            76654

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=94.27  E-value=1.6  Score=41.12  Aligned_cols=267  Identities=13%  Similarity=0.057  Sum_probs=135.8

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHc
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAF  112 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~--~~~~y~~l~~~~~  112 (325)
                      .+|.=|+++-+..=....++.+.--..-.--+.|  |..++++..+.-.++.   ..++-..+-.  -+-+++-..|.-|
T Consensus        52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~---~f~~lns~~G~~yhIsFpv~sR~sF  128 (572)
T KOG2466|consen   52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTA---IFLVLNSRPGSDYHISFPVLSRSSF  128 (572)
T ss_pred             ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHH---HHHHHccCCCcccccceeeeeeeeh
Confidence            5777899998888888888888877776666676  7777776665444422   1111111111  1235555556666


Q ss_pred             ChhH---HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccc
Q 020541          113 GGAG---RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRR  189 (325)
Q Consensus       113 G~~~---~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~  189 (325)
                      |-++   ..+..+.+...-+|...   -+.++.++-+++....+..-.+..++...-++.+++..++.=++-+|..+ ..
T Consensus       129 GiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~-~~  204 (572)
T KOG2466|consen  129 GIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYW-FP  204 (572)
T ss_pred             hhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheee-cc
Confidence            6554   45555555555555443   44555555444422211111233444333344444443333234444433 34


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCCccccchhhhhhhhhhhhhhhhhhh-hhhchhHHHhhc
Q 020541          190 VDSLRYTSALSVGLAIVFVVITAGVAIVKTIDG--SISMPCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENEL  266 (325)
Q Consensus       190 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~-~~~~~~~i~~~m  266 (325)
                      ..+++++-.+..+++...+...+... .+-.++  +..+.+..  .....-.|.++.++.-.+-.|. ...|.|...+--
T Consensus       205 p~~ir~lf~~ka~~t~fA~~g~LIw~-l~kAhG~G~l~~~~st--~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~  281 (572)
T KOG2466|consen  205 PYKIRHLFTWKAVLTPFAAFGFLIWL-LKKAHGLGHLFDSKST--VSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFA  281 (572)
T ss_pred             HHHhhhHHHHHHhhhHHHHHHHHHHH-HHhcCCccccccCCCc--ccccchhHHHHHHHHHHHhccchhhccCchhHhhc
Confidence            55666666655543333333322222 222233  11111111  1111222333333322222222 566788888888


Q ss_pred             CCCcchhH----HHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhhhcCCCCC
Q 020541          267 KDPTQIKS----IVRTSITLCSTVYITTSFFGLLLFGDR--TLDDVLANFDGD  313 (325)
Q Consensus       267 ~~p~~~~~----~~~~~~~~~~~~y~~~g~~gy~~fG~~--~~~~il~n~~~~  313 (325)
                      ++|.+-..    ++.+.+.+...+=++.+..++..||.+  ..-++++++-.+
T Consensus       282 ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~  334 (572)
T KOG2466|consen  282 KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDT  334 (572)
T ss_pred             CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhcc
Confidence            88863332    344555555556666677889999986  456666666543

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=92.65  E-value=7.7  Score=38.03  Aligned_cols=56  Identities=14%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541          102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG  162 (325)
Q Consensus       102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~  162 (325)
                      ..+.+..+...+++++.++.+..+...+++..+.+...+..+...-.     +|.++.+++
T Consensus       299 ~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amar-----DGlLP~~fa  354 (557)
T TIGR00906       299 APFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMAR-----DGLLFKWLA  354 (557)
T ss_pred             cHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCccHHHh
Confidence            34555555544567788887777777777777777666666654443     355555554

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=92.53  E-value=6.8  Score=36.76  Aligned_cols=159  Identities=16%  Similarity=0.183  Sum_probs=85.3

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCH----HHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK----SATY----SGV  107 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~----~~~y----~~l  107 (325)
                      ++++.|.+|++..-..+.+|+| +-...-+...+| ..++.=+.+.+++..-+...-.-...+++    ...|    ..-
T Consensus        59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY  137 (452)
T COG1115          59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY  137 (452)
T ss_pred             CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence            6788999999999999999999 778888888776 22333345555554444433333333221    1112    122


Q ss_pred             HHHHcC-hhHHHHHHHHHHHHHH-HHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccc
Q 020541          108 VADAFG-GAGRALLQVCIVVNNL-GMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLI  185 (325)
Q Consensus       108 ~~~~~G-~~~~~~~~~~~~~~~~-g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~  185 (325)
                      .++-+| ||...++.+..++.+. .........+.+.++..+              +     ..+....+.. .++.-+.
T Consensus       138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af--------------~-----~~~~~~gi~l-a~l~~~V  197 (452)
T COG1115         138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAF--------------G-----IPPLVTGIVL-ALLVALV  197 (452)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhc--------------C-----CcHHHHHHHH-HHHHHHH
Confidence            334444 5666666644433333 255666666666663222              1     1122222222 2333444


Q ss_pred             cccccchhhhhHHHHHH-HHHHHHHHHHHHHH
Q 020541          186 SFRRVDSLRYTSALSVG-LAIVFVVITAGVAI  216 (325)
Q Consensus       186 ~~~~l~~l~~~s~~~~~-~~~~~~~~~~~~~~  216 (325)
                      ..+.++++..++...+. ++..+++..+++..
T Consensus       198 I~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~  229 (452)
T COG1115         198 IFGGIKRIAKVSSKVVPFMAILYVLVALVIIV  229 (452)
T ss_pred             HHcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666655443 45555555554443

>TIGR00909 2A0306 amino acid transporter

Probab=91.54  E-value=12  Score=35.09  Aligned_cols=56  Identities=20%  Similarity=0.096  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhc
Q 020541          102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG  162 (325)
Q Consensus       102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~  162 (325)
                      ....++.++..|+++..++.+...+.++++..+.+...+..+....++     +..+++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d-----g~lP~~~~  319 (429)
T TIGR00909       264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD-----GLLPGSLS  319 (429)
T ss_pred             cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCcHHHH
Confidence            456678888899999999999999999999999988888888666543     44455554

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=90.63  E-value=11  Score=36.53  Aligned_cols=54  Identities=6%  Similarity=-0.113  Sum_probs=33.8

Q ss_pred             hhhhhhhhhhhhh-hhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 020541          242 LFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGL  295 (325)
Q Consensus       242 ~~~~~~i~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy  295 (325)
                      +..+++...|+.+ +.+.+....+.++++++..|...........+-++.|+..+
T Consensus       251 W~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if  305 (523)
T PF00209_consen  251 WIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIF  305 (523)
T ss_dssp             HHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHH
T ss_pred             HHHHHHHHhhccCCCcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHH
Confidence            4677888888887 45566666666777778887666666666555554444333

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=89.39  E-value=8.6  Score=35.78  Aligned_cols=98  Identities=15%  Similarity=0.162  Sum_probs=64.6

Q ss_pred             HHHhHhhhhchHH---HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHcChhHHHHHHHHHHH
Q 020541           51 STTIVGAGIMALP---ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFS-RASKSATYSGVVADAFGGAGRALLQVCIVV  126 (325)
Q Consensus        51 ~~~~iG~giL~lP---~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~  126 (325)
                      +|+.=.-|.-.-.   .....+|++.++.+.++...+.+....--.... ...+..=.++..++.||+.|..+...++.+
T Consensus       208 v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~l  287 (431)
T COG1114         208 VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFL  287 (431)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence            3333334444333   333356777776666666555554410000000 011344578889999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccccc
Q 020541          127 NNLGMLVVYMIIIGDVLSGAWL  148 (325)
Q Consensus       127 ~~~g~~~~y~i~~~~~l~~~~~  148 (325)
                      .|+-.+++-....+|+.++++|
T Consensus       288 ACLTTaiGLi~a~aefF~~~~p  309 (431)
T COG1114         288 ACLTTAVGLIVACAEFFSKLVP  309 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999977765

>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]

Probab=88.37  E-value=10  Score=37.61  Aligned_cols=108  Identities=15%  Similarity=0.125  Sum_probs=55.8

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELG----LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADA  111 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G----~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~  111 (325)
                      +.+-.+...-.+..++-.+|-| +.=.|+.-.+-|    .++=.++++++|.=..+--..+.+...+.+...+..++-..
T Consensus        34 R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif  113 (629)
T KOG3660|consen   34 RGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIF  113 (629)
T ss_pred             cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhChHh
Confidence            3444588999999999999998 556996666544    23334444444444444444444444444433444343333


Q ss_pred             cCh-hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 020541          112 FGG-AGRALLQVCIVVNNLGMLVVYMIIIGDVLS  144 (325)
Q Consensus       112 ~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~  144 (325)
                      =|= ++..++.+....+......=.+....++.+
T Consensus       114 ~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~  147 (629)
T KOG3660|consen  114 KGVGWASVVISALLAIYYIVILAWALYYLFSSFT  147 (629)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            232 333444444443333222222333344444

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=88.29  E-value=6.2  Score=37.26  Aligned_cols=79  Identities=22%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             hhChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 020541           68 ELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA  146 (325)
Q Consensus        68 ~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~  146 (325)
                      ++|.+.++.+.++.+.+.+....--....+. ++..=.....++.+|++++.+..+.+.+.|+-.+++-....+|.+++.
T Consensus       230 ~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~  309 (439)
T PRK15433        230 WAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY  309 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566666665555555544443211100000 122235667888999999999999999999999999999999988543

>PRK00701 manganese transport protein MntH; Reviewed

Probab=81.98  E-value=48  Score=31.51  Aligned_cols=41  Identities=7%  Similarity=-0.028  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020541          100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIG  140 (325)
Q Consensus       100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~  140 (325)
                      ..++..|++++-+||+..++..+...+.+.+....-.+-.+
T Consensus        92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a  132 (439)
T PRK00701         92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAA  132 (439)
T ss_pred             cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46689999999999998888777766666665555444333

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]

Probab=80.65  E-value=7.4  Score=38.93  Aligned_cols=101  Identities=12%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             cHHHHHHHHHHHhHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHHcChhHH
Q 020541           42 SFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVADAFGGAGR  117 (325)
Q Consensus        42 s~~~~~~~l~~~~iG~gi-L~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~---~~~~y~~l~~~~~G~~~~  117 (325)
                      +......=.+..+.|.-+ +=+-|....+|...+.+++++|++.+..|+.-+...+.+.   ...+|--+ .+.+|+-..
T Consensus       116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmI-SRsLGPEFG  194 (1075)
T KOG2082|consen  116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMI-SRSLGPEFG  194 (1075)
T ss_pred             eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEE-ecccCcccc
Confidence            333334444555666643 3577888899999999999999999998887776666554   34466554 444566555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Q 020541          118 ALLQVCIVVNNLGMLVVYMIIIGDVL  143 (325)
Q Consensus       118 ~~~~~~~~~~~~g~~~~y~i~~~~~l  143 (325)
                      -.++++..+..-.+...|+.-.-+.+
T Consensus       195 gAVGlcFYLgtT~AaaMYIlGaVEi~  220 (1075)
T KOG2082|consen  195 GAVGLCFYLGTTVAAAMYILGAVEIF  220 (1075)
T ss_pred             ceeeehhhhhhHHHHHHHHHhHHHHH
Confidence            55666665555555555655555543

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=80.44  E-value=38  Score=32.79  Aligned_cols=49  Identities=12%  Similarity=0.079  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020541          100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL  148 (325)
Q Consensus       100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~  148 (325)
                      ......++-....||++..++....++..+..+++-+...+......-.
T Consensus       323 ~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR  371 (550)
T KOG1289|consen  323 LGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR  371 (550)
T ss_pred             CCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence            3567888889999999998888888888888888777777766654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.61
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.45
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.16
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	98.34
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	97.53
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	96.92
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	95.7

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.61  E-value=2e-13  Score=127.60  Aligned_cols=244  Identities=13%  Similarity=0.090  Sum_probs=164.5

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA-TYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~-~y~~l~~~~~G~~  115 (325)
                      ++|+.+.++.++..+++++|+|++.+|....+.|. .+++..++.++..........|...+.+.. +.-+..++.+||+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   84 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF   84 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence            67899999999999999999999999988888886 478888888999999999999988887544 6778889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      ..++.++...+........+....++.+...++.          . ...+   ....+.+. +++++-....+..+...+
T Consensus        85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~---~~~~~~~~-~~~~~~~in~~g~~~~~~  149 (445)
T 3l1l_A           85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------L-KDPW---VLTITCVV-VLWIFVLLNIVGPKMITR  149 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----------G-GSHH---HHHHHHHH-HHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----------c-cccH---HHHHHHHH-HHHHHHHHHHhchHHHHH
Confidence            9999999999988877888888888877544321          0 0000   11111111 111222222334444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc--chhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 020541          196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS--KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI  272 (325)
Q Consensus       196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~  272 (325)
                      +..+...+.+..+++.   .+......+.  ....+.+.  ...++.++..++...+|+|.+........+|+|||+ +.
T Consensus       150 ~~~~~~~~~i~~~~~~---~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~i  224 (445)
T 3l1l_A          150 VQAVATVLALIPIVGI---AVFGWFWFRG--ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV  224 (445)
T ss_dssp             HHHHHHHHHHHHHHHH---HHTTSTTCCC--CCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHhCh--hhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccc
Confidence            4443332222222211   1111111111  11111111  112356788889999999999999999999999997 78


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541          273 KSIVRTSITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      +|++..+.....++|++..+......+.+
T Consensus       225 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          225 PIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            99999999999999999999888777643

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.45  E-value=2.3e-11  Score=113.58  Aligned_cols=241  Identities=11%  Similarity=0.109  Sum_probs=158.1

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHcCh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-ATYSGVVADAFGG  114 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP-~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~y~~l~~~~~G~  114 (325)
                      ++|+.+.++.++..+++++|+|++..| .+...+|. .+++..++.+++.......+.|...+.+. ...-+..++.+||
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~   82 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD   82 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence            678999999999999999999999888 55566676 67888888899999999999999888755 4577888999999


Q ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541          115 AG-RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       115 ~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l  193 (325)
                      +. ...+.+...+........+....++.+...++..           ...+  ... .+. ..+++++-....+..+..
T Consensus        83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~--~~~-~~~-~~~~~~~~~in~~g~~~~  147 (444)
T 3gia_A           83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP-----------INTF--NIA-ITE-IGIVAFFTALNFFGSKAV  147 (444)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------CCHH--HHH-HHH-HHHHHHHHHHHHHTHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CchH--HHH-HHH-HHHHHHHHHHHHHhHHHH
Confidence            62 2334566666666666777777777775444210           0000  011 111 111122222223344444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcCCCc-ch
Q 020541          194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI  272 (325)
Q Consensus       194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~p~-~~  272 (325)
                      .++..+...+.+..+++.++..+... +.    .+..|... ..++.+++.++....++|.+.+.+....+|+|||+ +.
T Consensus       148 ~~~~~~~~~~~i~~~~~~ii~~~~~~-~~----~~~~~~~~-~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~i  221 (444)
T 3gia_A          148 GRAEFFIVLVKLLILGLFIFAGLITI-HP----SYVIPDLA-PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNV  221 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC-CG----GGTSCCCS-HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc-Ch----hhcCCCCC-CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccch
Confidence            44444443222222222222222221 11    11222111 13456788888999999999999999999999998 58


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020541          273 KSIVRTSITLCSTVYITTSFFGLLLFG  299 (325)
Q Consensus       273 ~~~~~~~~~~~~~~y~~~g~~gy~~fG  299 (325)
                      ||++..+....+++|++..+......+
T Consensus       222 p~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          222 PRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999887776654

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.16  E-value=4.2e-09  Score=100.02  Aligned_cols=245  Identities=11%  Similarity=0.046  Sum_probs=140.7

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHHh--hcCCCCHHHHHHHHcC
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSR--ASKSATYSGVVADAFG  113 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~--~~~~~~y~~l~~~~~G  113 (325)
                      .+|+.+.++.+...++.++|  +..+|. ....|.. +++..++.+++. ......+.|...  ..+....-..+++.+|
T Consensus         9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P~GG~y~~~~~~~g   84 (511)
T 4djk_A            9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLG   84 (511)
T ss_dssp             ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---CHHHHHHHHHC
T ss_pred             cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhhhHHhhcC
Confidence            67899999999999999986  667775 4566643 333333333333 236777788777  6555567778899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchh
Q 020541          114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL  193 (325)
Q Consensus       114 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l  193 (325)
                      |+.+++..+...+.......++....++.+...+..        +......|  ... .+.+.. ++++-+...+..+..
T Consensus        85 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------p~~~~~~~--~~~-~~~~~~-~~~~~~in~~g~~~~  152 (511)
T 4djk_A           85 PRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW--------PALNEDPI--TKT-IAALII-LWALALTQFGGTKYT  152 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC--------GGGTSCSS--HHH-HHHHHH-HHHHHHHHHTCSSSH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cccccCcH--HHH-HHHHHH-HHHHHHHHHhChHHH
Confidence            999999999888887776666666666655333200        11111111  111 111111 111112222333444


Q ss_pred             hhhHHHHHHHHHH-HHHHHHHHHHHHhccCCC-----CCCCCCccccchhhhhhhhhhhhhhhhhhhhhhchhHHHhhcC
Q 020541          194 RYTSALSVGLAIV-FVVITAGVAIVKTIDGSI-----SMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK  267 (325)
Q Consensus       194 ~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~  267 (325)
                      .++..+...+.++ .+++.+...+.....+..     +.....|+..    ..+...++...+++|.|........+|+|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~G~e~~~~~a~E~k  228 (511)
T 4djk_A          153 ARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFS----KVGTLVVFVAFILSYMGVEASATHVNEMS  228 (511)
T ss_dssp             HHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTT----STTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcc----cchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence            4444333211111 112222222222222211     1111122211    12334567778999999999999999999


Q ss_pred             CCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020541          268 DPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDR  301 (325)
Q Consensus       268 ~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fG~~  301 (325)
                      ||+ +.||++..++.+.+++|++..+......+++
T Consensus       229 ~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          229 NPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             CCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            998 7899999999999999999999887777653

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=98.34  E-value=5.7e-05  Score=71.34  Aligned_cols=110  Identities=6%  Similarity=-0.092  Sum_probs=82.3

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhhhchHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKE-LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~giL~lP~~f~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~  115 (325)
                      ++|+.+.++-+..-.+..++.+.+.+...+.. .++..+++.+++..++......+......+.+. ++..+.+..||++
T Consensus        23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl-~~~v~~R~~FG~~  101 (501)
T 2jln_A           23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGI-NFTVAARMPFGIR  101 (501)
T ss_dssp             GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCC-CHHHHTTTTSCTT
T ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC-ChhhhhHhhcchh
Confidence            45667888888888888777777766644443 346777777777666666666666666666644 4999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW  147 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~  147 (325)
                      |.++..+...+.++|-........++.+..++
T Consensus       102 Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~  133 (501)
T 2jln_A          102 GSLIPITLKALLSLFWFGFQTWLGALALDEIT  133 (501)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888888888775443

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=97.53  E-value=0.02  Score=54.33  Aligned_cols=149  Identities=11%  Similarity=0.061  Sum_probs=83.9

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA  115 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~  115 (325)
                      -.|+.+.+...+.+..+.+++. ++.+|-...+.|+........ .++........+....++.+..|..|..++.||++
T Consensus        18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg~~   96 (530)
T 3dh4_A           18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKK   96 (530)
T ss_dssp             CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCcH
Confidence            4688899999999999998885 679996666777542211111 11111122333445556778999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 020541          116 GRALLQVCIVVN-NLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (325)
Q Consensus       116 ~~~~~~~~~~~~-~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~  194 (325)
                      .+.+..+...+. .+..+.+.+...+..++.++              +-     ......++..+++........++...
T Consensus        97 ~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------------Gi-----~~~~~i~i~~~i~~~Yt~~GGl~aV~  157 (530)
T 3dh4_A           97 LKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GI-----PLMYSILGLALFALVYSIYGGLSAVV  157 (530)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------TC-----CHHHHHHHHHHHHHHTTC------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CC-----CHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            988877665432 22222222222333332221              11     11122333344556677778888888


Q ss_pred             hhHHHHHHHHH
Q 020541          195 YTSALSVGLAI  205 (325)
Q Consensus       195 ~~s~~~~~~~~  205 (325)
                      +...+-.++.+
T Consensus       158 ~TD~iQ~~im~  168 (530)
T 3dh4_A          158 WTDVIQVFFLV  168 (530)
T ss_dssp             SHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887765433

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=96.92  E-value=0.14  Score=49.08  Aligned_cols=147  Identities=12%  Similarity=0.057  Sum_probs=79.0

Q ss_pred             CCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 020541           38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG  116 (325)
Q Consensus        38 ~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~  116 (325)
                      .|+.+.+.....+..+.+++. ++.+|-.-.+.|+........ .++........+..-.++.+..|..|..++.|||+.
T Consensus        48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~  126 (593)
T 2xq2_A           48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKL  126 (593)
T ss_dssp             ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCch
Confidence            477789999999988888775 669996666677532211111 111111122334455567789999999999999998


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhh
Q 020541          117 RALLQVCIVV-NNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY  195 (325)
Q Consensus       117 ~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~pl~~~~~l~~l~~  195 (325)
                      +.+..++..+ +.+......+...+..++.++              +.+     .....++..+++........++...+
T Consensus       127 ~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------------Gi~-----~~~~i~i~~~i~~~Yt~~GGl~av~~  187 (593)
T 2xq2_A          127 KTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GIP-----LMYSILGLALFALVYSIYGGLSAVVW  187 (593)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------------CCC-----HHHHHHHHHHHHHHHHHTTC---CCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------Ccc-----HHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            8777665443 222222222333344442222              111     11222233335555666677777777


Q ss_pred             hHHHHHHHH
Q 020541          196 TSALSVGLA  204 (325)
Q Consensus       196 ~s~~~~~~~  204 (325)
                      ...+..++.
T Consensus       188 TD~iQ~iim  196 (593)
T 2xq2_A          188 TDVIQVFFL  196 (593)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776665433

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=95.70  E-value=0.69  Score=43.41  Aligned_cols=260  Identities=15%  Similarity=0.126  Sum_probs=116.6

Q ss_pred             CCCCCcHHHHHHHHHHHhHhhh-hchHHHHHHhhC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 020541           37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELG----LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADA  111 (325)
Q Consensus        37 ~~~~~s~~~~~~~l~~~~iG~g-iL~lP~~f~~~G----~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~  111 (325)
                      +++=.|..+-++..+++.+|.| +-=.||...+-|    .++=++.++++|+=..+.=..+.+...+..+.+-.+.-+++
T Consensus         5 R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l   84 (519)
T 2a65_A            5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL   84 (519)
T ss_dssp             CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHh
Confidence            3455588899999999999999 889998877765    33333444444443333333344433323333433343444


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccccc-CccCCCcch------hhhc----cc-----ccch
Q 020541          112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS-------GAWLN-GVHHSGVTE------EWFG----QH-----WWTT  168 (325)
Q Consensus       112 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~-------~~~~~-~~~~~~~~~------~~~~----~~-----~~~~  168 (325)
                      ..++....++...++..+....-|.++.+-.+.       .-++. -..+..-..      ++++    .+     ...-
T Consensus        85 ~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~  164 (519)
T 2a65_A           85 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKP  164 (519)
T ss_dssp             SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCC
T ss_pred             cCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCc
Confidence            333222334444444444333334333333221       11110 000000000      1211    00     0000


Q ss_pred             h-HHHHHHHHHHHhhcccccccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC----C-CC--CCCCccccchhhh
Q 020541          169 R-FTLLLLTTLFVFLPLISFRRV-DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGS----I-SM--PCLLPEISKQASF  239 (325)
Q Consensus       169 ~-~~~~~i~~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~--~~~~p~~~~~~~~  239 (325)
                      + ........+.++.-++..|.+ +...+.+.+...+..+.+++   +.++...-++    . +.  --..|+++...+.
T Consensus       165 ~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vllii---L~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~  241 (519)
T 2a65_A          165 SLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVF---LVIRVFLLETPNGTAADGLNFLWTPDFEKLKDP  241 (519)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHH---HHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCH
Confidence            1 111111222234445566666 45666666655332222222   2222222111    0 00  0012333322222


Q ss_pred             hhhhhhhhhhhhhhh-hhhchhHHHhhcCCCcchhHHHHHHHHHHHHHHHH-----HHHHHHHhcC
Q 020541          240 WKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYIT-----TSFFGLLLFG  299 (325)
Q Consensus       240 ~~~~~~~~i~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~-----~g~~gy~~fG  299 (325)
                      .-+..+.+.+.|+++ +...+....+.++++++..|........-+.+-++     ++..||.++|
T Consensus       242 ~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g  307 (519)
T 2a65_A          242 GVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFG  307 (519)
T ss_dssp             HHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            345778888899988 45555566666776667777555555554444333     3334555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	95.52

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.52  E-value=0.56  Score=41.72  Aligned_cols=101  Identities=22%  Similarity=0.228  Sum_probs=67.2

Q ss_pred             CcHHHHHHHHHHHhHhhh-hchHHHHHHh-hC---hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 020541           41 ASFSGAVFNLSTTIVGAG-IMALPATVKE-LG---LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA  115 (325)
Q Consensus        41 ~s~~~~~~~l~~~~iG~g-iL~lP~~f~~-~G---~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~  115 (325)
                      .|..+.++..++..+|.| +-=.||...+ +|   .++=.+++++++.=..+.=..+.+..++.+...+..++....+++
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~   84 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR   84 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCc
Confidence            477889999999999998 6689987755 45   233344445555544444555666666777888998888887765


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020541          116 GRALLQVCIVVNNLGMLVVYMIIIGD  141 (325)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~i~~~~  141 (325)
                      ....+++...+..+..++-|.+..+-
T Consensus        85 ~~~giG~~~~~~~~~i~~yy~vi~~w  110 (509)
T d2a65a1          85 FAKILGVFGLWIPLVVAIYYVYIESW  110 (509)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666665555555555444