Citrus Sinensis ID: 020545

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MASPLYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPKF
Secondary Structure (PSIPRED)
cccccEEEEEEEccccccccEEEEEEcccEEEEEEccccccccccEEEEEEccccEEEEccccEEEEEEcccccEEEEEEcccccccccccccccEEcccccccccccHHHHHHHccccHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEccccccccEEcccccEEEEEcccccccccccccEEEEEEEcccccccccccccccEEEEEEEcEEEEEEEEccccEEEEEEEEcccEEEEccccEEEEEEccccEEEEEEEcccccccccccccccccccccHHHHHHHccccHHHHHHHHHcccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccccccEEEEEEEEEccEEEEEEccccccccccEEEEEccccEEEEcccEEEEEEccccccEEEEEEEEccccccccccEEEEEcccccccccccHHHHHHHHcccHHHHHHHHcccccccEEEEccccEccccccccccccccccccccccccccccccccEEEEEccccccHHHHcccEEEEEEEccccEEccccccccEEEEEEEEccEEEEEEcccccEEEccEEccccEEEEcccEEEEEEEcccccEEEEEEEcccccccccccccHHHHcccHHHHHHHccccHHHHHHHHHcccccEEEccccc
Coil and Loop (DISEMBL)
MASPLYVHIIVCLtendlhvipiiipcelgvagmvlpndqkhsQEEIVLGlrkgdvipvplgsaswwynngssdVVIVFVGEtsrayvpgefSYFLLTGAqgilggfsseftgraynmNENEAKILAKSQTGVLIIKLgqdesekiplphqhgnanlmvnnfanfpadfcvkkagmvtsftgsnfpfleqVGLSCTILKldanamlsptytadsVQVFYVVKGSGKAQIVGLNAKLvldseveagqllvvPRCFVVAIIAgpegiecfsittstrpalgklggkqsvmnGFSASVVQLALNVNEEFLKFFKEnvatseilippkf
Flexible Loop (DISEMBL)
MASPLYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFkenvatseilippkf
Low Complexity Region (SEG)
MASPLYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPKF
Disordered region (IsUnstruct)
****LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQ*******LPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEIL*****
Disordered Region (DISOPRED)
***PLYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNE*************************IPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPKF
Disordered Region (DISEMBL)
MASPLYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPKF
Disordered Region (DISPRO)
**SPLYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKI*LPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP*KF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASPLYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
P11828	481	Glycinin G3 OS=Glycine ma	no	no	0.901	0.609	0.264	2e-22
P07730	499	Glutelin type-A 2 OS=Oryz	no	no	0.833	0.543	0.256	2e-21
Q9XHP0	459	11S globulin seed storage	N/A	no	0.849	0.601	0.231	2e-21
Q02897	495	Glutelin type-B 2 OS=Oryz	no	no	0.873	0.573	0.251	3e-21
Q9ZWA9	451	12S seed storage protein	no	no	0.793	0.572	0.282	8e-21
P14614	500	Glutelin type-B 4 OS=Oryz	no	no	0.883	0.574	0.260	2e-20
Q6ERU3	500	Glutelin type-B 5 OS=Oryz	no	no	0.883	0.574	0.260	2e-20
P14323	499	Glutelin type-B 1 OS=Oryz	no	no	0.870	0.567	0.253	2e-20
O23878	565	13S globulin seed storage	N/A	no	0.867	0.499	0.244	3e-20
P07728	499	Glutelin type-A 1 OS=Oryz	no	no	0.830	0.541	0.253	3e-20

>sp|P11828|GLYG3_SOYBN Glycinin G3 OS=Glycine max GN=GY3 PE=3 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 150/378 (39%), Gaps = 85/378 (22%)

Query: 30  GVAGMVLP--------------NDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDV 75
           G+ GM+ P              + +   + + +   R+GD+I VP G A W YNN  + V
Sbjct: 98  GIFGMIFPGCPSTFEEPQQKGQSSRPQDRHQKIYHFREGDLIAVPTGFAYWMYNNEDTPV 157

Query: 76  VIVFVGETS-----------RAYVPG----EFSYFLLTGAQG------------------ 102
           V V + +T+           R Y+ G    EF  +     QG                  
Sbjct: 158 VAVSLIDTNSFQNQLDQMPRRFYLAGNQEQEFLQYQPQKQQGGTQSQKGKRQQEEENEGG 217

Query: 103 -ILGGFSSEFTGRAY-----------NMNENEAK-ILAKSQTGVLII------------- 136
            IL GF+ EF   A+             NE E K  +   + G+ +I             
Sbjct: 218 SILSGFAPEFLEHAFVVDRQIVRKLQGENEEEEKGAIVTVKGGLSVISPPTEEQQQRPEE 277

Query: 137 --KLGQDESEKIPLPHQHGNA--------NLMVNNFANFPADFCVKKAGMVTSFTGSNFP 186
             K   DE +K     Q  N          L  N       D    +AG +T+ T  +FP
Sbjct: 278 EEKPDCDEKDKH-CQSQSRNGIDETICTMRLRHNIGQTSSPDIFNPQAGSITTATSLDFP 336

Query: 187 FLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQ 246
            L  + LS     L  NAM  P Y  ++  + Y + G    Q+V  N + V D E++ GQ
Sbjct: 337 ALSWLKLSAQFGSLRKNAMFVPHYNLNANSIIYALNGRALVQVVNCNGERVFDGELQEGQ 396

Query: 247 LLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEF 306
           +L+VP+ F VA  +  +  E  S  T+ RP++G L G  S++N     V+Q   N+  + 
Sbjct: 397 VLIVPQNFAVAARSQSDNFEYVSFKTNDRPSIGNLAGANSLLNALPEEVIQQTFNLRRQQ 456

Query: 307 LKFFKENVATSEILIPPK 324
            +  K N   S  L+PPK
Sbjct: 457 ARQVKNNNPFS-FLVPPK 473

Glycinin is the major seed storage protein of soybean.
Glycine max (taxid: 3847)

>sp|P07730|GLUA2_ORYSJ Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 53/324 (16%)

Query: 43  SQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRA--YVPGEFSYFLLTG- 99
            + + +   R+GDVI +P G A W YN+G   VV ++V + +     +      FLL G 
Sbjct: 150 DEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDINNGANQLDPRQRDFLLAGN 209

Query: 100 --------------AQGILGGFSSEFTGRAYNMNENEAKILA--KSQTGVLI-IKLG--- 139
                         +Q I  GFS+E    A+ ++   A+ L     Q G ++ ++ G   
Sbjct: 210 KRNPQAYRREVEEWSQNIFSGFSTELLSEAFGISNQVARQLQCQNDQRGEIVRVERGLSL 269

Query: 140 ---------QDESEKIPLPH---------QHGNA----------NLMVNNFANFP--ADF 169
                    Q++ +     H         Q+G+            + V    + P  AD 
Sbjct: 270 LQPYASLQEQEQGQMQSREHYQEGGYQQSQYGSGCPNGLDETFCTMRVRQNIDNPNRADT 329

Query: 170 CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQI 229
              +AG VT+    NFP L  V +S   + L  NA+LSP +  ++  + Y+ +G  + Q+
Sbjct: 330 YNPRAGRVTNLNSQNFPILNLVQMSAVKVNLYQNALLSPFWNINAHSIVYITQGRAQVQV 389

Query: 230 VGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMN 289
           V  N K V + E+  GQLL+VP+ +VV   A  EG    +  T+    +  + GK S+  
Sbjct: 390 VNNNGKTVFNGELRRGQLLIVPQHYVVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFR 449

Query: 290 GFSASVVQLALNVNEEFLKFFKEN 313
                V+  A  ++ E  +  K N
Sbjct: 450 ALPTDVLANAYRISREEAQRLKHN 473

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XHP0|11S2_SESIN 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 130/311 (41%), Gaps = 35/311 (11%)

Query: 48  VLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSR--AYVPGEFSYFLLTGA----- 100
           V  LR+GD++ +P G+A W YN+GS D+V V + + +     +  +F  F L G      
Sbjct: 144 VHRLRQGDIVAIPSGAAHWCYNDGSEDLVAVSINDVNHLSNQLDQKFRAFYLAGGVPRSG 203

Query: 101 ----------QGILGGFSSEFTGRAYNM----------NENEAKILAKSQTGVLIIKLGQ 140
                       I   F +E    A+N+           E E  ++  ++  +  ++  +
Sbjct: 204 EQEQQARQTFHNIFRAFDAELLSEAFNVPQETIRRMQSEEEERGLIVMARERMTFVRPDE 263

Query: 141 DESEKIPLPHQHGNA--------NLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVG 192
           +E E+     Q  N             N  +   AD   ++AG V     +  P L+ + 
Sbjct: 264 EEGEQEHRGRQLDNGLEETFCTMKFRTNVESRREADIFSRQAGRVHVVDRNKLPILKYMD 323

Query: 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252
           LS     L +NA++SP ++     + YV +G  + Q+V  N + +++  V  G++ VVP+
Sbjct: 324 LSAEKGNLYSNALVSPDWSMTGHTIVYVTRGDAQVQVVDHNGQALMNDRVNQGEMFVVPQ 383

Query: 253 CFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKE 312
            +     AG  G E  +  T+  P    L G  SV+      V+  +  ++    +  K 
Sbjct: 384 YYTSTARAGNNGFEWVAFKTTGSPMRSPLAGYTSVIRAMPLQVITNSYQISPNQAQALKM 443

Query: 313 NVATSEILIPP 323
           N  +   L+ P
Sbjct: 444 NRGSQSFLLSP 454

Seed storage protein.

Sesamum indicum (taxid: 4182)

>sp|Q02897|GLUB2_ORYSJ Glutelin type-B 2 OS=Oryza sativa subsp. japonica GN=GLUB2 PE=2 SV=2

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 50/334 (14%)

Query: 42  HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE--TSRAYVPGEFSYFLLTG 99
             + + +   R+GDV+ +P G A W+YN+G + VV ++V +   S   +      FLL G
Sbjct: 144 RDEHQKIHQFRQGDVVALPAGVAHWFYNDGDASVVAIYVYDINNSANQLEPRQKEFLLAG 203

Query: 100 -----------------AQGILGGFSSEFTGRAYNMNENEAKILA--KSQTGVLI-IKLG 139
                            +Q I  GF +E    A  +N   AK L     Q G ++ +K G
Sbjct: 204 NNNRVQQVYGSSIEQHSSQNIFNGFGTELLSEALGINTVAAKRLQSQNDQRGEIVHVKNG 263

Query: 140 ---------------QDESEKIPLPHQHGNA---NLMVNNFANFPADFCVK--------- 172
                          Q + +++    Q   +   N +  NF    A   ++         
Sbjct: 264 LQLLKPTLTQQQEQAQAQYQEVQYSEQQQTSSRWNGLEENFCTIKARVNIENPSRADSYN 323

Query: 173 -KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG 231
            +AG ++S     FP L  + +S T + L  NA+LSP +  ++  + Y+++G  + Q+V 
Sbjct: 324 PRAGRISSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGQSRVQVVS 383

Query: 232 LNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGF 291
              K V D  +  GQLL++P+ + V   A  EG +  +I T+    +  L GK SV    
Sbjct: 384 NFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNSVFRAL 443

Query: 292 SASVVQLALNVNEEFLKFFKENVATSEILIPPKF 325
              VV  A  ++ E  +  K N         P+F
Sbjct: 444 PVDVVANAYRISREQARSIKNNRGEEHGAFTPRF 477

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZWA9|CRU2_ARATH 12S seed storage protein CRU2 OS=Arabidopsis thaliana GN=CRU2 PE=1 SV=1

 Score =  101 bits (251), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 120/294 (40%), Gaps = 36/294 (12%)

Query: 51  LRKGDVIPVPLGSASWWYNNGSSDVVIVFV-----GETSRAYVPGEFSYFLLTGAQ---- 101
            R+GDV     G + WWYN G SD VIV V      E     VP     F L G++    
Sbjct: 145 FRRGDVFASLAGVSQWWYNRGDSDAVIVIVLDVTNRENQLDQVP---RMFQLAGSRTQEE 201

Query: 102 ----------GILGGFSSEFTGRAYNMNENEAKILAKSQTGV-LIIKLGQDESEKIPLP- 149
                         GF       A+ +N   AK L   +     II+        IP P 
Sbjct: 202 EQPLTWPSGNNAFSGFDPNIIAEAFKINIETAKQLQNQKDNRGNIIRANGPLHFVIPPPR 261

Query: 150 --HQHGNANLMVNNFANFP----------ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTI 197
              Q G AN +   +              +D    +AG +++    N P L  V L+   
Sbjct: 262 EWQQDGIANGIEETYCTAKIHENIDDPERSDHFSTRAGRISTLNSLNLPVLRLVRLNALR 321

Query: 198 LKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVA 257
             L +  M+ P +TA++  V YV  G  K Q+V  N + V + +V  GQ++V+P+ F V+
Sbjct: 322 GYLYSGGMVLPQWTANAHTVLYVTGGQAKIQVVDDNGQSVFNEQVGQGQIIVIPQGFAVS 381

Query: 258 IIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFK 311
             AG  G E  S  T+    +  L G+ S +      V++ +  VNEE  K  K
Sbjct: 382 KTAGETGFEWISFKTNDNAYINTLSGQTSYLRAVPVDVIKASYGVNEEEAKRIK 435

Seed storage protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P14614|GLUB4_ORYSJ Glutelin type-B 4 OS=Oryza sativa subsp. japonica GN=GLUB4 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 143/353 (40%), Gaps = 66/353 (18%)

Query: 36  LPNDQKHSQE-----EIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV---GETSRAY 87
           LP  Q  SQ+     + +   R+GD++ +P G A W+YN G + VV ++V      +   
Sbjct: 133 LPEGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNEGDAPVVALYVFDLNNNANQL 192

Query: 88  VPGEFSYFLLTG-----------------AQGILGGFSSEFTGRAYNMNENEAKIL--AK 128
            P +   FLL G                  Q I  GF++E    A  +N   AK L    
Sbjct: 193 EPRQ-KEFLLAGNNNREQQMYGRSIEQHSGQNIFSGFNNELLSEALGVNALVAKRLQGQN 251

Query: 129 SQTGVLI-IKLG---------------------------QDESEKIPLPHQHG------- 153
            Q G +I +K G                           Q   E+ P    +G       
Sbjct: 252 DQRGEIIRVKNGLKLLRPAFAQQQEQAQQQEQAQAQYQVQYSEEQQPSTRCNGLDENFCT 311

Query: 154 -NANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTA 212
             A L + N ++  AD    +AG +T      FP L  V LS T + L  NA+LSP +  
Sbjct: 312 IKARLNIENPSH--ADTYNPRAGRITRLNSQKFPILNLVQLSATRVNLYQNAILSPFWNV 369

Query: 213 DSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT 272
           ++  + Y+V+G  + Q+V    K V +  +  GQLL++P+ +VV   A  EG +  S  T
Sbjct: 370 NAHSLVYIVQGHARVQVVSNLGKTVFNGVLRPGQLLIIPQHYVVLKKAEHEGCQYISFKT 429

Query: 273 STRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPKF 325
           +    +  L GK S+       V+  A  ++ E  +  K N         P++
Sbjct: 430 NANSMVSHLAGKNSIFRAMPVDVIANAYRISREQARSLKNNRGEELGAFTPRY 482

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ERU3|GLUB5_ORYSJ Glutelin type-B 5 OS=Oryza sativa subsp. japonica GN=GLUB5 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 143/353 (40%), Gaps = 66/353 (18%)

Query: 36  LPNDQKHSQE-----EIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV---GETSRAY 87
           LP  Q  SQ+     + +   R+GD++ +P G A W+YN G + VV ++V      +   
Sbjct: 133 LPEGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNEGDAPVVALYVFDLNNNANQL 192

Query: 88  VPGEFSYFLLTG-----------------AQGILGGFSSEFTGRAYNMNENEAKIL--AK 128
            P +   FLL G                  Q I  GF++E    A  +N   AK L    
Sbjct: 193 EPRQ-KEFLLAGNNNREQQMYGRSIEQHSGQNIFSGFNNELLSEALGVNALVAKRLQGQN 251

Query: 129 SQTGVLI-IKLG---------------------------QDESEKIPLPHQHG------- 153
            Q G +I +K G                           Q   E+ P    +G       
Sbjct: 252 DQRGEIIRVKNGLKLLRPAFAQQQEQAQQQEQAQAQYQVQYSEEQQPSTRCNGLDENFCT 311

Query: 154 -NANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTA 212
             A L + N ++  AD    +AG +T      FP L  V LS T + L  NA+LSP +  
Sbjct: 312 IKARLNIENPSH--ADTYNPRAGRITRLNSQKFPILNLVQLSATRVNLYQNAILSPFWNV 369

Query: 213 DSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT 272
           ++  + Y+V+G  + Q+V    K V +  +  GQLL++P+ +VV   A  EG +  S  T
Sbjct: 370 NAHSLVYIVQGHARVQVVSNLGKTVFNGVLRPGQLLIIPQHYVVLKKAEHEGCQYISFKT 429

Query: 273 STRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPKF 325
           +    +  L GK S+       V+  A  ++ E  +  K N         P++
Sbjct: 430 NANSMVSHLAGKNSIFRAMPVDVIANAYRISREQARSLKNNRGEELGAFTPRY 482

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P14323|GLUB1_ORYSJ Glutelin type-B 1 OS=Oryza sativa subsp. japonica GN=GluB1-A PE=2 SV=3

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 132/339 (38%), Gaps = 56/339 (16%)

Query: 42  HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV---GETSRAYVPGEFSYFLLT 98
             + + +   R+GD++ +P G A W+YN+G + +V V+V      +    P +   FLL 
Sbjct: 144 RDEHQKIHQFRQGDIVALPAGVAHWFYNDGDAPIVAVYVYDVNNNANQLEPRQ-KEFLLA 202

Query: 99  G-------------------AQGILGGFSSEFTGRAYNMNENEAKILA--KSQTGVLI-I 136
           G                    Q I  GF  E    A  +N   AK L     Q G +I +
Sbjct: 203 GNNNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSEALGINAVAAKRLQSQNDQRGEIIHV 262

Query: 137 KLG------------------------------QDESEKIPLPHQHGNANLMVNNFANFP 166
           K G                              Q  S    L        + VN      
Sbjct: 263 KNGLQLLKPTLTQQQEQAQAQDQYQQVQYSERQQTSSRWNGLEENFCTIKVRVNIENPSR 322

Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
           AD    +AG +TS     FP L  + +S T + L  NA+LSP +  ++  + Y+++G  +
Sbjct: 323 ADSYNPRAGRITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGRSR 382

Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
            Q+V    K V D  +  GQLL++P+ + V   A  EG +  +I T+    +  L GK S
Sbjct: 383 VQVVSNFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNS 442

Query: 287 VMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPKF 325
           V       VV  A  ++ E  +  K N         P+F
Sbjct: 443 VFRALPVDVVANAYRISREQARSLKNNRGEEHGAFTPRF 481

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O23878|13S1_FAGES 13S globulin seed storage protein 1 OS=Fagopyrum esculentum GN=FA02 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 138/343 (40%), Gaps = 61/343 (17%)

Query: 41  KHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIV--FVGETSRAYVPGEFSYFLLT 98
           +  Q + +  +R GDVIP P G   W +N+G +D++ +  +   + +  + G    F L 
Sbjct: 211 RGDQHQKIFRIRDGDVIPSPAGVVQWTHNDGDNDLISITLYDANSFQNQLDGNVRNFFLA 270

Query: 99  G----------AQGILGGFSSEFTGRAYNMNEN--EAKILAKSQTGVL-----------I 135
           G          +Q       S+   R  + +E   EA IL   Q  +L           I
Sbjct: 271 GQSKQSREDRRSQRQTREEGSDRQSRESDDDEALLEANILTGFQDEILQEIFRNVDQETI 330

Query: 136 IKLGQDESEK------------IP------LPHQHGNA----------------NLMVNN 161
            KL  D  ++            +P      L  + G+                 NL    
Sbjct: 331 SKLRGDNDQRGFIVQARDLKLRVPEEYEEELQRERGDRKRGGSGRSNGLEQAFCNLKFKQ 390

Query: 162 FANFP--ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFY 219
             N P  AD    +AG + +   +N P LE + LS   + L  NA+L P +  ++    Y
Sbjct: 391 NVNRPSRADVFNPRAGRINTVNSNNLPILEFIQLSAQHVVLYKNAILGPRWNLNAHSALY 450

Query: 220 VVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALG 279
           V +G G+ Q+VG   + V D  V+ GQ+LVVP+ F V + AG EG+E   +         
Sbjct: 451 VTRGEGRVQVVGDEGRSVFDDNVQRGQILVVPQGFAVVLKAGREGLEWVELKNDDNAITS 510

Query: 280 KLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
            + GK SV+      V+  + +++ +     K      E+ +P
Sbjct: 511 PIAGKTSVLRAIPVEVLANSYDISTKEAFRLKNGRQEVEVFLP 553

Seed storage protein.

Fagopyrum esculentum (taxid: 3617)

>sp|P07728|GLUA1_ORYSJ Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 133/323 (41%), Gaps = 53/323 (16%)

Query: 44  QEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRA--YVPGEFSYFLLTG-- 99
           + + +   R+GDVI +P G A W YN+G   VV ++V + +     +      FLL G  
Sbjct: 151 EHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDLNNGANQLDPRQRDFLLAGNK 210

Query: 100 -------------AQGILGGFSSEFTGRAYNMNENEAKILA--KSQTGVLII-------- 136
                        +Q I  GFS+E    A  ++   A+ L     Q G ++         
Sbjct: 211 RNPQAYRREVEERSQNIFSGFSTELLSEALGVSSQVARQLQCQNDQRGEIVRVEHGLSLL 270

Query: 137 ---------KLGQDESEKIPLPHQH-------GNANLMVNNFANFP----------ADFC 170
                    + GQ +S +     Q+       G +N +   F              AD  
Sbjct: 271 QPYASLQEQEQGQVQSRERYQEGQYQQSQYGSGCSNGLDETFCTLRVRQNIDNPNRADTY 330

Query: 171 VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIV 230
             +AG VT+    NFP L  V +S   + L  NA+LSP +  ++  V Y+ +G  + Q+V
Sbjct: 331 NPRAGRVTNLNTQNFPILSLVQMSAVKVNLYQNALLSPFWNINAHSVVYITQGRARVQVV 390

Query: 231 GLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNG 290
             N K V + E+  GQLL++P+ + V   A  EG    +  T+    +  + GK S+   
Sbjct: 391 NNNGKTVFNGELRRGQLLIIPQHYAVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFRA 450

Query: 291 FSASVVQLALNVNEEFLKFFKEN 313
               V+  A  ++ E  +  K N
Sbjct: 451 LPNDVLANAYRISREEAQRLKHN 473

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
225447983	358	PREDICTED: 11S globulin seed storage pro	0.926	0.840	0.537	7e-86
147806470	358	hypothetical protein VITISV_020438 [Viti	0.926	0.840	0.537	1e-85
225447990	358	PREDICTED: glutelin type-A 2 [Vitis vini	0.926	0.840	0.537	1e-85
225447981	358	PREDICTED: 11S globulin seed storage pro	0.926	0.840	0.533	4e-85
359486116	358	PREDICTED: LOW QUALITY PROTEIN: 11S glob	0.926	0.840	0.530	7e-84
359486094	359	PREDICTED: LOW QUALITY PROTEIN: glutelin	0.929	0.841	0.537	5e-83
225447988	358	PREDICTED: 11S globulin seed storage pro	0.926	0.840	0.527	6e-83
290578589	358	globulin [Vitis cinerea var. helleri x V	0.926	0.840	0.524	2e-82
224128189	360	predicted protein [Populus trichocarpa]	0.92	0.830	0.527	1e-81
317106764	358	JHL25P11.12 [Jatropha curcas]	0.929	0.843	0.504	9e-77

>gi|225447983|ref|XP_002269464.1| PREDICTED: 11S globulin seed storage protein 2 [Vitis vinifera]

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 166/309 (53%), Positives = 218/309 (70%), Gaps = 8/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D + I  ++    GV GMV PN    + +E+VL L+KGD+IPVP G+ SWWYN+G S+++
Sbjct: 56  DSNRIGYVLQGSCGVVGMVSPN----ASQEVVLRLKKGDIIPVPSGAVSWWYNDGDSELI 111

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           IVF+GETS+AYVPGEF+YFLLTG QGILGGFS+EF  RAY++N  EAK LAKSQ+G+L+I
Sbjct: 112 IVFLGETSKAYVPGEFTYFLLTGTQGILGGFSTEFNSRAYDINNEEAKKLAKSQSGLLLI 171

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
           KL   E  K+P P ++    L+ N  A  P D  V+ AG++T+ T   FPFL +VGLS T
Sbjct: 172 KL--PEGHKMPHPCKNSPDKLVFNIDAALP-DIHVQNAGLLTALTAKKFPFLGEVGLSAT 228

Query: 197 ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
           ++KLDANAM SP Y AD SVQV YV KGSG+ Q+VG+N +  LD++V+AG L VVPR FV
Sbjct: 229 LVKLDANAMSSPVYAADSSVQVIYVAKGSGRIQVVGINGERALDTKVKAGHLFVVPRFFV 288

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
            A IA  EG+E FS+ T+T+P  G+  GK SV    S  V+Q +LNV  EF + F+  + 
Sbjct: 289 AAAIADGEGMEYFSMITTTQPVFGEFTGKTSVWGALSPQVLQASLNVGPEFEQLFRAKIK 348

Query: 316 TSEILIPPK 324
            S IL+PP+
Sbjct: 349 KSTILVPPQ 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806470|emb|CAN67616.1| hypothetical protein VITISV_020438 [Vitis vinifera]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/309 (53%), Positives = 217/309 (70%), Gaps = 8/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D + I  ++    GV GMV PN    + +E+VL L+KGD+IPVP G+ SWWYN+G S+++
Sbjct: 56  DSNRIGYVLQGSCGVVGMVSPN----ASQEVVLRLKKGDIIPVPSGAVSWWYNDGDSELI 111

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           IVF+GETS+AYVPGEF+YFLLTG QGILGGFS+EF  RAY++N  EAK LAKSQ+G+L+I
Sbjct: 112 IVFLGETSKAYVPGEFTYFLLTGTQGILGGFSTEFNSRAYDINNEEAKKLAKSQSGLLLI 171

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
           KL   E  K+P P ++    L+ N  A  P D  V+ AG++T+ T   FPFL +VGLS T
Sbjct: 172 KL--PEGHKMPHPCKNSPDKLVFNIDAALP-DIHVQNAGLLTALTAKKFPFLGEVGLSAT 228

Query: 197 ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
           ++KLDANAM SP Y AD SVQV YV KGSG+ Q+VG+N +  LD +V+AG L VVPR FV
Sbjct: 229 LVKLDANAMSSPVYAADSSVQVIYVAKGSGRIQVVGINGERALDRKVKAGHLFVVPRFFV 288

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
            A IA  EG+E FS+ T+T+P  G+  GK SV    S  V+Q +LNV  EF + F+  + 
Sbjct: 289 AAAIADGEGMEYFSMITTTQPVFGEFTGKTSVWGALSPQVLQASLNVGPEFEQLFRAKIK 348

Query: 316 TSEILIPPK 324
            S IL+PP+
Sbjct: 349 KSTILVPPQ 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447990|ref|XP_002270155.1| PREDICTED: glutelin type-A 2 [Vitis vinifera] gi|298204533|emb|CBI23808.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/309 (53%), Positives = 218/309 (70%), Gaps = 8/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D + I  ++    GV GMV P     + EE+VL L++GD+IPVP G+ SWWYN+G S++V
Sbjct: 56  DSNKIGYVLQGSCGVVGMVFP----EASEEVVLKLKEGDIIPVPSGAVSWWYNDGDSELV 111

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           IVF+GETS+AYVPGEF+YFLLTG QGILGGFS+EF  RAYN++  EA+ LAKSQTGVL+I
Sbjct: 112 IVFLGETSKAYVPGEFTYFLLTGTQGILGGFSTEFNSRAYNISNEEAEKLAKSQTGVLLI 171

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
           KL   E +K+P P ++    L+ N  A  P D  V+ AG++T+ T   FPFL +VGLS T
Sbjct: 172 KL--PEGQKMPHPCKNSTDKLVYNIDAALP-DIHVQNAGLLTALTAKKFPFLGEVGLSAT 228

Query: 197 ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
           ++KLDANAM SP Y AD SVQV YV KGSG+ Q+VG+N +  LD++V+AG L VVPR FV
Sbjct: 229 LVKLDANAMSSPVYAADSSVQVIYVAKGSGRIQVVGINGERALDTKVKAGHLYVVPRFFV 288

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
            + IA  EG+E FS+ T+T+P  G+  GK SV    S  V+Q +LNV  EF + F+  + 
Sbjct: 289 ASTIADGEGMEYFSLITATQPVFGEFTGKTSVWGALSPQVLQASLNVAPEFEQLFRAKIK 348

Query: 316 TSEILIPPK 324
            S IL+PP+
Sbjct: 349 KSTILVPPQ 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447981|ref|XP_002269304.1| PREDICTED: 11S globulin seed storage protein 2-like [Vitis vinifera]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/309 (53%), Positives = 217/309 (70%), Gaps = 8/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D + I  ++    GV G+V P     + +E+VL L+KGD+IPVP G+ SWWYN+G S+++
Sbjct: 56  DSNKIGYVLQGSCGVVGIVSPK----ASQEVVLRLKKGDIIPVPSGAVSWWYNDGDSELI 111

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           IVF+GETS+AYVPGEF+YFLLTG QGILGGFS+EF  RAY++N  EAK LA+SQ+GVLII
Sbjct: 112 IVFLGETSKAYVPGEFTYFLLTGTQGILGGFSTEFNSRAYDINNEEAKKLARSQSGVLII 171

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
           KL   E  K+P P ++    L+ N  A  P D  V+ AG++T+ T   FPFL +VGLS T
Sbjct: 172 KL--PEGHKMPHPCKNSTDKLVFNIDAALP-DIHVQNAGLLTALTAKKFPFLGEVGLSAT 228

Query: 197 ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
           ++KLDANAM SP Y AD SVQV YV KGSG+ Q+VG+N +  LD++V+AG LLVVPR FV
Sbjct: 229 LVKLDANAMSSPMYAADSSVQVIYVAKGSGRIQVVGINGERALDTKVKAGHLLVVPRFFV 288

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
            + IA  EG+E FS+ T+T P  G+  GK SV    S  V+Q +LNV  EF + F+  + 
Sbjct: 289 ASAIADGEGLEYFSLITATEPVFGEFTGKTSVWGALSPHVLQASLNVAPEFEQLFRAKIK 348

Query: 316 TSEILIPPK 324
            S IL+PP+
Sbjct: 349 KSTILVPPQ 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486116|ref|XP_003633390.1| PREDICTED: LOW QUALITY PROTEIN: 11S globulin seed storage protein 2-like [Vitis vinifera]

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 164/309 (53%), Positives = 214/309 (69%), Gaps = 8/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D + I  ++    GV GMV PN    + +E+VL L+KGD+IPVP G+ SWWYN+G S+++
Sbjct: 56  DSNRIGYVLQGSCGVVGMVSPN----ASQEVVLRLKKGDIIPVPSGAVSWWYNDGDSELI 111

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           IVF+GETS+AYVPGEF+YFLLTG QGILGGFS+EF  RAY++N  EAK LAKSQ+GVLII
Sbjct: 112 IVFLGETSKAYVPGEFTYFLLTGTQGILGGFSTEFNSRAYDINNEEAKKLAKSQSGVLII 171

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
           KL   E  K+P P ++    L+ N  A  P D  V+ AG++T+ T   FPFL +VGLS T
Sbjct: 172 KL--PEGHKMPHPCKNSTDKLVFNIDAALP-DIHVQNAGLLTALTAKKFPFLGEVGLSAT 228

Query: 197 ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
           ++KLDANAM SP Y  D SVQV YV KGSG+ Q+VG+N +  LD++V+AG LL+VPR FV
Sbjct: 229 LVKLDANAMSSPMYAGDSSVQVIYVAKGSGRIQVVGINGERALDAKVKAGHLLLVPRFFV 288

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
            + IA  EG+E FS+ T+T    G   GK SV    S  V+Q +LNV  EF + F+  + 
Sbjct: 289 ASAIADGEGLEYFSLITATEHVFGXFTGKTSVWGALSPQVLQASLNVAPEFEQLFRAKIK 348

Query: 316 TSEILIPPK 324
              IL+PP+
Sbjct: 349 KGTILVPPQ 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486094|ref|XP_003633383.1| PREDICTED: LOW QUALITY PROTEIN: glutelin type-B 5-like [Vitis vinifera]

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/309 (53%), Positives = 208/309 (67%), Gaps = 7/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D + I  ++    G+ GMV P     + EE+VL L+KGD IPVP G   WWYN G S++ 
Sbjct: 56  DCNKIGYVLQGTCGIVGMVFP----KASEEVVLKLKKGDTIPVPSGVVXWWYNQGDSELD 111

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           IVF+GETS AY+PGEF+YFLLTG QGILGGFS+ F  RAYN+N  EAK LAKSQT VLII
Sbjct: 112 IVFLGETSNAYLPGEFTYFLLTGTQGILGGFSTIFNSRAYNINNEEAKKLAKSQTSVLII 171

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
           KL  DE +K+P P ++ + + ++ +      +  VK AG +T+ T   FPFL QVGLS T
Sbjct: 172 KL--DEGQKMPQPCENNSTDKIMYDVDAALPNIDVKNAGSLTALTEMKFPFLGQVGLSAT 229

Query: 197 ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
            LKL ANAM SP Y AD SVQ  YV KGSG+ Q+VG+N +  LD++++AG + VVPR FV
Sbjct: 230 RLKLHANAMSSPMYAADSSVQAIYVTKGSGRIQVVGINGERALDTKMKAGHMCVVPRFFV 289

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
            + IA  EG+ECFSITTST+   G+L GK SV+   S  V+Q ALNV  EF + F     
Sbjct: 290 ASAIADGEGMECFSITTSTQSVFGELTGKTSVLGALSPQVIQAALNVAPEFKQLFMSKTK 349

Query: 316 TSEILIPPK 324
            S ILIPPK
Sbjct: 350 NSTILIPPK 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447988|ref|XP_002269868.1| PREDICTED: 11S globulin seed storage protein 2 [Vitis vinifera] gi|298204531|emb|CBI23806.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 163/309 (52%), Positives = 215/309 (69%), Gaps = 8/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D + I  ++    GV G+V P     + +E+VL L+KGD+IPVP G+ SWWYN+G S+++
Sbjct: 56  DSNRIGYVLQGSCGVVGIVPPK----ASQEVVLRLKKGDIIPVPSGAVSWWYNDGDSELI 111

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           IVF+GETS+AYVPGEF+ FLLTG QGILGGFS+EF  RAY++N  EAK LAKSQ+GVLII
Sbjct: 112 IVFLGETSKAYVPGEFTNFLLTGTQGILGGFSTEFNSRAYDINNEEAKKLAKSQSGVLII 171

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
           KL   E  K+P P ++    L+ N  A  P D  V+ AG++T+ T   FPFL +VGLS T
Sbjct: 172 KL--PEGHKMPHPCKNSTDKLVFNIDAALP-DIHVQNAGLLTALTAKKFPFLGEVGLSAT 228

Query: 197 ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
           ++KLDANAM SP Y  D SVQV YV KGSG+ Q+VG+N +  LD++V+AG LL+VPR FV
Sbjct: 229 LVKLDANAMSSPMYAGDSSVQVIYVAKGSGRIQVVGINGERALDAKVKAGHLLLVPRFFV 288

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
            + IA  EG+E FS+ T+T P  G+  GK SV    S  V+Q +LNV  EF + F+  + 
Sbjct: 289 ASAIADGEGLEYFSLITATEPIFGEFTGKTSVWGALSPHVLQASLNVAPEFEQLFRAKIK 348

Query: 316 TSEILIPPK 324
            S IL+PP+
Sbjct: 349 KSTILVPPQ 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290578589|gb|ADD51189.1| globulin [Vitis cinerea var. helleri x Vitis riparia]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/309 (52%), Positives = 215/309 (69%), Gaps = 8/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D + I  ++    GV G+V P     + +E+VL L+KGD+IPVP G+ SWWYN+G S+++
Sbjct: 56  DSNRIGYVLQGSCGVVGIVPPK----ASQEVVLRLKKGDIIPVPSGAVSWWYNDGDSELI 111

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           +VF+GETS+AYVPGEF+ FLLTG QGILGGFS+EF  RAY++N  EAK LAKSQ+GVLII
Sbjct: 112 VVFLGETSKAYVPGEFTNFLLTGTQGILGGFSTEFNSRAYDINNEEAKKLAKSQSGVLII 171

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
           KL   E  K+P P ++    L+ N  A  P D  V+ AG++T+ T   FPFL +VGLS T
Sbjct: 172 KL--PEGHKMPHPCKNSTDKLVFNIDAALP-DIHVQNAGLLTALTAKKFPFLGEVGLSAT 228

Query: 197 ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
           ++KLDANA+ SP Y AD SVQV YV KGSG+ Q+VG+N +  LD++V+AG LLVVPR FV
Sbjct: 229 LVKLDANALSSPMYAADSSVQVIYVAKGSGRIQVVGINGERALDTKVKAGHLLVVPRFFV 288

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
            + IA  EG+E FS+ T+T P   +  GK SV    S  V+Q +LNV  EF + F+  + 
Sbjct: 289 ASAIADGEGMEYFSLITATGPVFSEFTGKTSVWGALSPHVLQASLNVAPEFEQLFRAKIK 348

Query: 316 TSEILIPPK 324
            S IL+PP+
Sbjct: 349 KSTILVPPQ 357

Source: Vitis cinerea var. helleri x Vitis riparia

Species: Vitis cinerea var. helleri x Vitis riparia

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128189|ref|XP_002329103.1| predicted protein [Populus trichocarpa] gi|118482429|gb|ABK93137.1| unknown [Populus trichocarpa] gi|222869772|gb|EEF06903.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/311 (52%), Positives = 213/311 (68%), Gaps = 12/311 (3%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG--SSD 74
           D   I  ++    G+ GMVLPN    S EE+VL L+KGDVIPVPLG+ SWWYNNG  S +
Sbjct: 56  DSSKIGYVLQGSDGIVGMVLPN----SSEEVVLRLKKGDVIPVPLGALSWWYNNGDHSEE 111

Query: 75  VVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVL 134
           VV+VF+G+TS+A++PGEF+YF L+G QGI+GGFS+EF  RAY MN  EA  LAKSQTG+L
Sbjct: 112 VVVVFLGQTSKAHIPGEFTYFFLSGGQGIMGGFSTEFISRAYKMNGKEADKLAKSQTGIL 171

Query: 135 IIKLGQDESEKIPLPHQHGN-ANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGL 193
           +IKL       I +PH +      MV N     AD  V+  G+  + T + FPFLE+ GL
Sbjct: 172 LIKL----EPGISMPHPNTEIVEKMVYNIDAALADVDVRGGGVFKALTAARFPFLEEAGL 227

Query: 194 SCTILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252
           S   +K++ANAM SP+YTAD + QVFYV +G+G+ Q+VG+  K VLD++++AGQLLVVPR
Sbjct: 228 SVNHVKMEANAMYSPSYTADGTFQVFYVARGTGRVQVVGIGGKRVLDTKIQAGQLLVVPR 287

Query: 253 CFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKE 312
            FVVA IA  EG+E  SI   T PA+ +   K+SV N  S  V Q+AL+V  EF +FFK 
Sbjct: 288 FFVVAQIADSEGMEFVSILPGTSPAVEEFASKKSVWNALSPIVSQVALSVTPEFEEFFKS 347

Query: 313 NVATSEILIPP 323
           N+  + ILIPP
Sbjct: 348 NMQKTTILIPP 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106764|dbj|BAJ53257.1| JHL25P11.12 [Jatropha curcas]

 Score =  293 bits (749), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 206/309 (66%), Gaps = 7/309 (2%)

Query: 17  DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVV 76
           D   I  ++    G+ GMVLPN    S +E+VL L KGD+I VPLGSASWWYNNG S++V
Sbjct: 54  DCSKIGYVLQGTDGIVGMVLPN----SSKEVVLKLNKGDLISVPLGSASWWYNNGDSNLV 109

Query: 77  IVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII 136
           IVF+GETS++Y  GEF+YFLL+G  G++GGFSSEFT +AYNMNE EA  LAKSQ GVLI+
Sbjct: 110 IVFLGETSKSYTAGEFTYFLLSGGLGVIGGFSSEFTSQAYNMNEQEACKLAKSQNGVLIV 169

Query: 137 KLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCT 196
            +  ++  KIP P        MV N  +   D  V+K G +  FT   FPFL +VGLS +
Sbjct: 170 TI--EQGIKIPHPDHLEFPENMVYNIDSAKPDLEVEKGGSLKIFTPEKFPFLGKVGLSVS 227

Query: 197 ILKLDANAMLSPTYTADSV-QVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV 255
            +KL+ANAM SPTYTAD   ++ YVVKGSG  QIVG+N K VLD+++E GQL +VP+ F 
Sbjct: 228 HVKLEANAMYSPTYTADGTNRLIYVVKGSGNLQIVGINGKRVLDTKIEDGQLFLVPKFFT 287

Query: 256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
           VA +AG EG+E     T++ P +  L  K SV N  S  V Q++L +  +  K FK N+ 
Sbjct: 288 VAAVAGNEGMEVIISITNSTPVVEALAAKISVWNALSPIVSQISLGITPDLEKLFKSNIQ 347

Query: 316 TSEILIPPK 324
            + +++PP+
Sbjct: 348 KNSVIVPPR 356

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2026545	356	AT1G07750 "AT1G07750" [Arabido	0.88	0.803	0.403	2.6e-54
TAIR|locus:2065516	356	AT2G28680 "AT2G28680" [Arabido	0.88	0.803	0.4	4.9e-53
UNIPROTKB|Q9M4Q7	353	Q9M4Q7 "Seed storage protein"	0.48	0.441	0.333	8.8e-23
TAIR|locus:2024219	451	AT1G03890 [Arabidopsis thalian	0.630	0.454	0.294	6e-18
UNIPROTKB|Q9XHP0	459	Q9XHP0 "11S globulin seed stor	0.483	0.342	0.254	3.5e-16
TAIR|locus:2121308	524	CRU3 "AT4G28520" [Arabidopsis	0.452	0.280	0.306	1.4e-15
TAIR|locus:2024234	455	CRU2 "AT1G03880" [Arabidopsis	0.449	0.320	0.310	2.8e-15
TAIR|locus:2167654	472	CRA1 "CRUCIFERINA" [Arabidopsi	0.452	0.311	0.272	2.9e-12
TAIR|locus:2056568	511	AT2G28490 [Arabidopsis thalian	0.452	0.287	0.277	1.2e-08

TAIR|locus:2026545 AT1G07750 "AT1G07750" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 119/295 (40%), Positives = 174/295 (58%)

Query:    30 GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP 89
             G AG+VLP      +EE V+ +++GD I +P G  +WW+NN   ++VI+F+GET + +  
Sbjct:    68 GTAGIVLPE-----KEEKVIAIKQGDSIALPFGVVTWWFNNEDPELVILFLGETHKGHKA 122

Query:    90 GEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLP 149
             G+F+ F LTG  GI  GFS+EF GRA++++EN  K L  SQTG  I+KL  D   K+P P
Sbjct:   123 GQFTEFYLTGTNGIFTGFSTEFVGRAWDLDENTVKKLVGSQTGNGIVKL--DAGFKMPQP 180

Query:   150 HQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPT 209
              +   A  ++N     P D  +K  G V      N P + +VG    ++++DA++M SP 
Sbjct:   181 KEENRAGFVLNCL-EAPLDVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDAHSMCSPG 239

Query:   210 YTADS-VQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF 268
             ++ DS +QV Y+V GSG+ Q+VG + K VL++ ++AG L +VPR FVV+ IA  +G+  F
Sbjct:   240 FSCDSALQVTYIVGGSGRVQVVGGDGKRVLETHIKAGSLFIVPRFFVVSKIADADGMSWF 299

Query:   269 SITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP 323
             SI T+  P    L G  SV    S  V+Q A  V  E  K F+    +S I  PP
Sbjct:   300 SIVTTPDPIFTHLAGNTSVWKSLSPEVLQAAFKVAPEVEKSFRSTRTSSAIFFPP 354

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2065516 AT2G28680 "AT2G28680" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 118/295 (40%), Positives = 175/295 (59%)

Query:    30 GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP 89
             G AG+VLP      +EE V+ ++KGD I +P G  +WW+NN  +++V++F+GET + +  
Sbjct:    68 GTAGIVLPE-----KEEKVIAIKKGDSIALPFGVVTWWFNNEDTELVVLFLGETHKGHKA 122

Query:    90 GEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLP 149
             G+F+ F LTG+ GI  GFS+EF GRA++++E   K L  SQTG  I+K+  D S K+P P
Sbjct:   123 GQFTDFYLTGSNGIFTGFSTEFVGRAWDLDETTVKKLVGSQTGNGIVKV--DASLKMPEP 180

Query:   150 HQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPT 209
              + G+    V N    P D  +K  G V      N P + +VG    ++++D ++M SP 
Sbjct:   181 KK-GDRKGFVLNCLEAPLDVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDGHSMCSPG 239

Query:   210 YTADS-VQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF 268
             ++ DS +QV Y+V GSG+ QIVG + K VL++ V+AG L +VPR FVV+ IA  +G+  F
Sbjct:   240 FSCDSALQVTYIVGGSGRVQIVGADGKRVLETHVKAGVLFIVPRFFVVSKIADSDGLSWF 299

Query:   269 SITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP 323
             SI T+  P    L G+ SV    S  V+Q A  V+ E  K F+    +  I   P
Sbjct:   300 SIVTTPDPIFTHLAGRTSVWKALSPEVLQAAFKVDPEVEKAFRSKRTSDAIFFSP 354

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

UNIPROTKB|Q9M4Q7 Q9M4Q7 "Seed storage protein" [Ricinus communis (taxid:3988)]

 Score = 218 (81.8 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
 Identities = 52/156 (33%), Positives = 78/156 (50%)

Query:   167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
             AD    +AG VTS    N P L  + LS     L  NA+++P +  ++  + Y+ +GSG+
Sbjct:   193 ADIYNPRAGRVTSVNSHNLPILRYLQLSIQKAVLYKNALMTPHWNINAHSIRYITRGSGR 252

Query:   227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
              QIV  N   V D +V+ GQ+  VP+ FVV   A  EG+E  S  T+    + +L G+ S
Sbjct:   253 VQIVNENGDSVFDGQVQRGQMFTVPQNFVVITKASNEGLEWVSFKTNDNAKINQLAGRVS 312

Query:   287 VMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
              +      VV  A  V+ E  +  K+N     +L P
Sbjct:   313 AIRSMPEEVVANAFQVSVEDARRLKDNRQEVTLLSP 348

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2024219 AT1G03890 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
 Identities = 65/221 (29%), Positives = 97/221 (43%)

Query:   106 GFSSEFTGRAYNMNENEAKILA--KSQTGVLIIKLGQDESEKIPLPH---QHGNANLMVN 160
             GF       A+ +N   AK L   K   G  II+        IP P    Q G AN +  
Sbjct:   216 GFDPNIIAEAFKINIETAKQLQNQKDNRGN-IIRANGPLHFVIPPPREWQQDGIANGIEE 274

Query:   161 NFA------NF--P--ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTY 210
              +       N   P  +D    +AG +++    N P L  V L+     L +  M+ P +
Sbjct:   275 TYCTAKIHENIDDPERSDHFSTRAGRISTLNSLNLPVLRLVRLNALRGYLYSGGMVLPQW 334

Query:   211 TADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI 270
             TA++  V YV  G  K Q+V  N + V + +V  GQ++V+P+ F V+  AG  G E  S 
Sbjct:   335 TANAHTVLYVTGGQAKIQVVDDNGQSVFNEQVGQGQIIVIPQGFAVSKTAGETGFEWISF 394

Query:   271 TTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFK 311
              T+    +  L G+ S +      V++ +  VNEE  K  K
Sbjct:   395 KTNDNAYINTLSGQTSYLRAVPVDVIKASYGVNEEEAKRIK 435

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

UNIPROTKB|Q9XHP0 Q9XHP0 "11S globulin seed storage protein 2" [Sesamum indicum (taxid:4182)]

 Score = 168 (64.2 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
 Identities = 40/157 (25%), Positives = 72/157 (45%)

Query:   167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
             AD   ++AG V     +  P L+ + LS     L +NA++SP ++     + YV +G  +
Sbjct:   298 ADIFSRQAGRVHVVDRNKLPILKYMDLSAEKGNLYSNALVSPDWSMTGHTIVYVTRGDAQ 357

Query:   227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
              Q+V  N + +++  V  G++ VVP+ +     AG  G E  +  T+  P    L G  S
Sbjct:   358 VQVVDHNGQALMNDRVNQGEMFVVPQYYTSTARAGNNGFEWVAFKTTGSPMRSPLAGYTS 417

Query:   287 VMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP 323
             V+      V+  +  ++    +  K N  +   L+ P
Sbjct:   418 VIRAMPLQVITNSYQISPNQAQALKMNRGSQSFLLSP 454

GO:0042735 "protein body" evidence=NAS

GO:0045735 "nutrient reservoir activity" evidence=NAS

GO:0051259 "protein oligomerization" evidence=NAS

TAIR|locus:2121308 CRU3 "AT4G28520" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 45/147 (30%), Positives = 69/147 (46%)

Query:   167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
             AD      G VTS      P LE V LS T   L  NAM+ P Y  ++ ++ Y   G G+
Sbjct:   354 ADVYKPSLGRVTSVNSYTLPILEYVRLSATRGVLQGNAMVLPKYNMNANEILYCTGGQGR 413

Query:   227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
              Q+V  N + VLD +V+ GQL+V+P+ F   + +     E  S  T+    +  L G+ S
Sbjct:   414 IQVVNDNGQNVLDQQVQKGQLVVIPQGFAYVVQSHGNKFEWISFKTNENAMISTLAGRTS 473

Query:   287 VMNGFSASVVQLALNVNEEFLKFFKEN 313
             ++      V+     ++ E  +  K N
Sbjct:   474 LLRALPLEVISNGFQISPEEARKIKFN 500

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;TAS

GO:0042735 "protein body" evidence=TAS

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2024234 CRU2 "AT1G03880" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
 Identities = 46/148 (31%), Positives = 67/148 (45%)

Query:   166 PADFCVKKA--GMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKG 223
             P+D  V K   G +++    N P L  + LS     +  NAM+ P +  ++    YV  G
Sbjct:   287 PSDADVYKPSLGYISTLNSYNLPILRLLRLSALRGSIRKNAMVLPQWNVNANAALYVTNG 346

Query:   224 SGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGG 283
                 Q+V  N + V D E+ +GQLLVVP+ F V   A  E  E     T+    +  L G
Sbjct:   347 KAHIQMVNDNGERVFDQEISSGQLLVVPQGFSVMKHAIGEQFEWIEFKTNENAQVNTLAG 406

Query:   284 KQSVMNGFSASVVQLALNVNEEFLKFFK 311
             + SVM G    V+     ++ E  K  K
Sbjct:   407 RTSVMRGLPLEVITNGYQISPEEAKRVK 434

GO:0009845 "seed germination" evidence=RCA;TAS

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2167654 CRA1 "CRUCIFERINA" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
 Identities = 40/147 (27%), Positives = 65/147 (44%)

Query:   167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
             AD    + G +++    + P L  + LS     +  NAM+ P + A++  + YV  G  +
Sbjct:   303 ADVYKPQLGYISTLNSYDLPILRFIRLSALRGSIRQNAMVLPQWNANANAILYVTDGEAQ 362

Query:   227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
              QIV  N   V D +V  GQL+ VP+ F V   A     +     T+    +  L G+ S
Sbjct:   363 IQIVNDNGNRVFDGQVSQGQLIAVPQGFSVVKRATSNRFQWVEFKTNANAQINTLAGRTS 422

Query:   287 VMNGFSASVVQLALNVNEEFLKFFKEN 313
             V+ G    V+     ++ E  +  K N
Sbjct:   423 VLRGLPLEVITNGFQISPEEARRVKFN 449

GO:0005634 "nucleus" evidence=ISM

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2056568 AT2G28490 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 43/155 (27%), Positives = 72/155 (46%)

Query:   173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL 232
             K G   +    ++  L+  G+   ++ L A AM++P     + +   V+ GSG+ Q+V  
Sbjct:   343 KYGWSIALDYDDYKPLKHSGIGVYLVNLTAGAMMAPHMNPTATEYGIVLAGSGEIQVVFP 402

Query:   233 NAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEG-IECFSITTST---RPALGKLGGKQSVM 288
             N    +++ V  G +  +PR F    IA   G  E    TTS    RP    L G  S++
Sbjct:   403 NGTSAMNTRVSVGDVFWIPRYFAFCQIASRTGPFEFVGFTTSAHKNRPQF--LVGSNSLL 460

Query:   289 NGFSASVVQLALNVNEEFLKFFKENVATSEILIPP 323
                + + + +A  V+EE ++ F E  A  E +I P
Sbjct:   461 RTLNLTSLSIAFGVDEETMRRFIE--AQREAVILP 493

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026508001 SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (358 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
PLN00212	493	PLN00212, PLN00212, glutelin; Provisional	2e-28
smart00835	146	smart00835, Cupin_1, Cupin	1e-21
pfam00190	139	pfam00190, Cupin_1, Cupin	5e-11
smart00835	146	smart00835, Cupin_1, Cupin	7e-11
pfam00190	139	pfam00190, Cupin_1, Cupin	8e-04

>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional

 Score =  114 bits (287), Expect = 2e-28
 Identities = 82/328 (25%), Positives = 132/328 (40%), Gaps = 54/328 (16%)

Query: 52  RKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY--FLLTG---------- 99
           R+GDV+ +P G A W+YN+G + VV ++V + +      E     FLL G          
Sbjct: 153 RQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYG 212

Query: 100 -------AQGILGGFSSEFTGRAYNMNENEAKILA--KSQTGVLI------------IKL 138
                   Q I  GFS+E    A  +N   AK L     Q G +I            +  
Sbjct: 213 RSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNGLQLLQPTLTQ 272

Query: 139 GQDESEKIPL-----------PHQHGNANLMVNNFANFP----------ADFCVKKAGMV 177
            Q+++++                  G  N +  NF              AD    +AG +
Sbjct: 273 QQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSRADTYNPRAGRI 332

Query: 178 TSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLV 237
           T      FP L  + +S T + L  NA+LSP +  ++  V Y+ +G  + Q+V  N K V
Sbjct: 333 TRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTV 392

Query: 238 LDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQ 297
            +  +  GQLL++P+ + V   A  EG +  +  T+    +  + GK S+       V+ 
Sbjct: 393 FNGVLRPGQLLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSIFRALPVDVIA 452

Query: 298 LALNVNEEFLKFFKENVATSEILIPPKF 325
            A  ++ E  +  K N         P+F
Sbjct: 453 NAYRISREEARRLKNNRGDELGAFTPRF 480

Length = 493

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL 232
           + G +     +NFP L  +G+S   + L+   ML P Y   + ++ YVV+G G+  +V  
Sbjct: 10  EGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDP 69

Query: 233 NAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGF 291
           N   V D+ +  G + VVP+      +  G E +E  +  T+       L G+ SV+ G 
Sbjct: 70  NGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRGL 129

Query: 292 SASVVQLALNVNEE 305
              V+  A  V+ E
Sbjct: 130 PPEVLAAAFGVSAE 143

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDA-NAMLSPTYTADSVQVFYVVKGSGKA-QIV 230
           + G + +   +N P L  +  S     L     +L P Y  ++ ++ YV++G G+   +V
Sbjct: 13  EGGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILYVLQGRGRVGFVV 72

Query: 231 GLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRP 276
                 V   ++  G + VVP  F       G  G+E  +  T+   
Sbjct: 73  PGCGFRVFHQKLREGDVFVVPAGFAHWQYNSGDPGLELVAFDTNNPA 119

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP 89
           G  G+V PN  K         LR+GDV  VP G   +  N+G  ++  V           
Sbjct: 62  GRVGVVDPNGNK----VYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTNDPNRR- 116

Query: 90  GEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAK 124
                F L G   +L G   E    A+ ++  E +
Sbjct: 117 -----FFLAGRNSVLRGLPPEVLAAAFGVSAEEVR 146

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAY-V 88
           G  G V+P        +    LR+GDV  VP G A W YN+G   + +V     + A  +
Sbjct: 66  GRVGFVVPGCGFRVFHQK---LREGDVFVVPAGFAHWQYNSGDPGLELVAFDTNNPANQL 122

Query: 89  PGEFSY--FLLTGAQ 101
           P E     F L G +
Sbjct: 123 PREVLARAFFLAGNE 137

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PLN00212	493	glutelin; Provisional	100.0
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	100.0
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.94
PLN00212	493	glutelin; Provisional	99.94
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.9
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.88
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.82
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.76
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.65
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.4
PRK11171	266	hypothetical protein; Provisional	99.36
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.09
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	99.03
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.91
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	98.91
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	98.9
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	98.73
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.65
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	98.63
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.61
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	98.53
COG1917	131	Uncharacterized conserved protein, contains double	98.53
COG3837	161	Uncharacterized conserved protein, contains double	98.48
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.44
COG1917	131	Uncharacterized conserved protein, contains double	98.41
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.39
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.33
COG3837	161	Uncharacterized conserved protein, contains double	98.27
COG4297	163	Uncharacterized protein containing double-stranded	98.25
COG1791	181	Uncharacterized conserved protein, contains double	98.23
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.23
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.21
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.19
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.19
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.18
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.14
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.13
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.12
PRK11171	266	hypothetical protein; Provisional	98.1
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.01
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.0
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	97.99
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	97.89
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.82
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	97.81
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.79
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.77
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	97.76
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.74
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.73
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	97.66
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	97.57
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.56
COG1791	181	Uncharacterized conserved protein, contains double	97.53
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.41
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.38
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.36
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.21
COG4297	163	Uncharacterized protein containing double-stranded	97.16
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	97.14
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.08
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	97.05
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	97.01
PRK13500	312	transcriptional activator RhaR; Provisional	96.98
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	96.97
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	96.94
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	96.85
PRK13501	290	transcriptional activator RhaR; Provisional	96.77
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.76
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	96.73
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	96.72
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	96.69
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	96.68
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	96.63
PRK13502	282	transcriptional activator RhaR; Provisional	96.55
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	96.53
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	96.53
PLN02658	435	homogentisate 1,2-dioxygenase	96.51
KOG2107	179	consensus Uncharacterized conserved protein, conta	96.48
PRK13500	312	transcriptional activator RhaR; Provisional	96.46
PRK13501	290	transcriptional activator RhaR; Provisional	96.42
PRK15131	389	mannose-6-phosphate isomerase; Provisional	96.4
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	96.39
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	96.36
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	96.27
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.25
KOG2107	179	consensus Uncharacterized conserved protein, conta	96.23
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.21
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	96.19
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	96.15
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	96.14
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	96.14
PRK13503	278	transcriptional activator RhaS; Provisional	96.08
PRK13502	282	transcriptional activator RhaR; Provisional	95.98
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	95.88
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	95.87
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	95.86
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	95.83
PRK13503	278	transcriptional activator RhaS; Provisional	95.64
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	95.59
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	95.44
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	95.03
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	94.83
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	94.8
PF12852	186	Cupin_6: Cupin	94.68
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	94.58
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	94.43
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	94.29
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	94.08
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	93.9
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	93.42
COG3257	264	GlxB Uncharacterized protein, possibly involved in	93.13
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	93.1
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	92.71
PLN02658	435	homogentisate 1,2-dioxygenase	92.33
KOG3706	629	consensus Uncharacterized conserved protein [Funct	91.91
PF12852	186	Cupin_6: Cupin	91.87
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	91.78
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	91.75
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	91.64
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	90.44
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	89.87
COG3257	264	GlxB Uncharacterized protein, possibly involved in	89.39
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	89.08
TIGR02466	201	conserved hypothetical protein. This family consis	88.17
KOG3706	629	consensus Uncharacterized conserved protein [Funct	87.33
PRK12335	287	tellurite resistance protein TehB; Provisional	84.67
PRK15131	389	mannose-6-phosphate isomerase; Provisional	83.84
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	83.32
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	83.19
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	82.42
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	81.98
COG2850	383	Uncharacterized conserved protein [Function unknow	80.97
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	80.62
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	80.46

>PLN00212 glutelin; Provisional

Probab=100.00  E-value=4.8e-70  Score=537.79  Aligned_cols=315  Identities=26%  Similarity=0.431  Sum_probs=284.5

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC--------------------CCcceEEEEeeCCcEEEeCCCCe
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK--------------------HSQEEIVLGLRKGDVIPVPLGSA   64 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~--------------------~~~~~~~~~l~~GDv~~vP~G~~   64 (325)
                      +.+++|++|||++|++++||++|+ |++|+|.|+|++                    .|.++++++|++||||+||+|++
T Consensus        87 i~p~gL~lP~y~na~~liyV~qG~-G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~  165 (493)
T PLN00212         87 IEPQGLLLPRYSNTPGLVYIIQGR-GSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVA  165 (493)
T ss_pred             ecCCcccCccccCCCeEEEEEeCe-EEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCe
Confidence            467899999999999999999999 999999998843                    24577889999999999999999


Q ss_pred             EEEEecCCCCEEEEEEeecCCCCC--CCcceeeeecccc-----------------ccccCCChhHHhhhcCCCHHHHHH
Q 020545           65 SWWYNNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGAQ-----------------GILGGFSSEFTGRAYNMNENEAKI  125 (325)
Q Consensus        65 ~~~~N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~~-----------------s~l~~f~~~vLa~af~v~~~~~~~  125 (325)
                      ||+||+|++++++++++|+++..|  +..++.|||||+.                 |+|+||++++|++||||+.++++|
T Consensus       166 hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~k  245 (493)
T PLN00212        166 HWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKR  245 (493)
T ss_pred             EEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccccccCchhhcCCHHHHHHHHCCCHHHHHH
Confidence            999999999999999999988776  2346899999973                 599999999999999999999999


Q ss_pred             HhcccCc-eeEEEecCCcCCCCcccCCC-------------------------C-----C-------CCceeeeecC-CC
Q 020545          126 LAKSQTG-VLIIKLGQDESEKIPLPHQH-------------------------G-----N-------ANLMVNNFAN-FP  166 (325)
Q Consensus       126 l~~~q~~-~~Iv~~~~~~~~~~~~~~p~-------------------------~-----~-------~~~~~~nl~~-~~  166 (325)
                      |++++++ +.|||++.    ++.++.|.                         .     .       ..+.++|+++ .+
T Consensus       246 lq~~~d~rG~IVrv~~----~l~~~~P~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p~~  321 (493)
T PLN00212        246 LQSQNDQRGEIIRVKN----GLQLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSR  321 (493)
T ss_pred             HhccccCCccEEEECC----CcccCCCchhhhhHHHHhhhhcccccchhhhccccccCCCCccccccccccccccCCccc
Confidence            9988755 79999986    22222220                         0     0       2256788877 56


Q ss_pred             CCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCcc
Q 020545          167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQ  246 (325)
Q Consensus       167 p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gd  246 (325)
                      +|++++.+|+++.+++.+||+|+++|||+.+++|.+|||+.||||+||++|+||++|+++++||+++|+++|+.+|++||
T Consensus       322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd  401 (493)
T PLN00212        322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ  401 (493)
T ss_pred             cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccCCceEecCCC
Q 020545          247 LLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPK  324 (325)
Q Consensus       247 v~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i~~~p~  324 (325)
                      |||||+||+|.+.|++++++|++|.+++++..++|||++|+|++||.+||++||+++++++++|+.++.++.++++|+
T Consensus       402 vfVVPqg~~v~~~A~~egfe~v~F~tna~~~~s~laG~~Sv~~alp~eVla~Af~is~eea~~lk~n~~~e~~~~~p~  479 (493)
T PLN00212        402 LLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSIFRALPVDVIANAYRISREEARRLKNNRGDELGAFTPR  479 (493)
T ss_pred             EEEECCCCeEEEeecCCceEEEEeecCCCccccccccHHHHHHhCCHHHHHHHcCCCHHHHHHHHhcccCceeecCCC
Confidence            999999999999999999999999999998889999999999999999999999999999999999988889999986

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=100.00  E-value=1e-45  Score=357.14  Aligned_cols=287  Identities=15%  Similarity=0.169  Sum_probs=239.1

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      |++..+.-||++.+.|+.||++|+ .++++++.++     +.+.+.|++||+++||+|.+|+++|.+ ++++++++++.+
T Consensus        74 l~pG~~~~~HwH~~~E~~yVl~G~-~~v~~~d~~g-----~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~  146 (367)
T TIGR03404        74 LEPGAIRELHWHKEAEWAYVLYGS-CRITAVDENG-----RNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDG  146 (367)
T ss_pred             EcCCCCCCcccCCCceEEEEEeeE-EEEEEEcCCC-----cEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCc
Confidence            567788889988889999999999 9999998764     666678999999999999999999995 568888888654


Q ss_pred             CCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc-ccCCCCC-CCceeeee
Q 020545           85 RAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP-LPHQHGN-ANLMVNNF  162 (325)
Q Consensus        85 ~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~-~~~p~~~-~~~~~~nl  162 (325)
                      ....+.   .+.++   ++|+.+|++||+++|+++++++++|++.+  .+|+....+...... ...|.+. .+.++|++
T Consensus       147 ~f~~~~---~~~~~---~~l~~~p~~Vla~~f~l~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (367)
T TIGR03404       147 NFSEDG---TFLVT---DWLAHTPKDVLAKNFGVPESAFDNLPLKE--LYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHL  218 (367)
T ss_pred             ccCCcc---eeeHH---HHHHhCCHHHHHHHhCCCHHHHHhccccC--ceEEecCCCCccccccCcCCCCCCCccEEEEh
Confidence            433332   44443   67888999999999999999999999876  468866432211111 1112222 45789999


Q ss_pred             cCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEe
Q 020545          163 ANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEV  242 (325)
Q Consensus       163 ~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l  242 (325)
                      .+.+|..  ..||+++.+++.+||+++  +++++.++|.||++++||||++++||.||++|++++++++++|+ ....+|
T Consensus       219 ~~~~p~~--~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~-~~~~~l  293 (367)
T TIGR03404       219 SEQKPKQ--VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGN-ARTFDY  293 (367)
T ss_pred             hhCCcee--cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCc-EEEEEE
Confidence            9999843  368999999999999998  48999999999999999999999999999999999999998874 234579


Q ss_pred             cCccEEEECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhcc
Q 020545          243 EAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENV  314 (325)
Q Consensus       243 ~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~  314 (325)
                      ++||+++||+|..|++.| |+++++++.++++..+....|   ++||..+|++||+++|+++++++++|++.+
T Consensus       294 ~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l---~~~l~~~p~~vl~~~~~~~~~~~~~l~~~~  363 (367)
T TIGR03404       294 QAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSL---NQWLALTPPQLVAAHLNLDDEVIDSLKKEK  363 (367)
T ss_pred             CCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEH---HHHHhhCCHHHHHHHhCcCHHHHHhccccC
Confidence            999999999999998655 889999999999998887777   699999999999999999999999998764

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.94  E-value=1.1e-26  Score=197.19  Aligned_cols=135  Identities=19%  Similarity=0.356  Sum_probs=108.0

Q ss_pred             eeecCCCCCeeccCCeEEEEEcCCCCccccc-ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc---
Q 020545          160 NNFANFPADFCVKKAGMVTSFTGSNFPFLEQ-VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK---  235 (325)
Q Consensus       160 ~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~-~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~---  235 (325)
                      ||+.+.+|.+. +++|+++.+++.++|+|.. .++++.++.|+||||++|||| +|++|.||++|+++++++++++.   
T Consensus         1 fn~~~~~~~~~-~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~   78 (144)
T PF00190_consen    1 FNLREPRPRVS-NEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEE   78 (144)
T ss_dssp             EETCSSSEEEE-ETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSE
T ss_pred             CCCCCCCCccc-CCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCcccc
Confidence            78888888765 4799999999999995444 466666777799999999999 99999999999999999999862   


Q ss_pred             -eEEeEE--ecCccEEEECCccEEEEEcC-CCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHH
Q 020545          236 -LVLDSE--VEAGQLLVVPRCFVVAIIAG-PEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFL  307 (325)
Q Consensus       236 -~~~~~~--l~~Gdv~vvP~G~~h~~~~g-~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v  307 (325)
                       +.+..+  +++|||++||+|++||+.|. +++...+.++.+.++...           +|++|++++|+++.+++
T Consensus        79 ~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~-----------l~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen   79 FRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ-----------LPPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             EEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE-----------SSHHHHHHHEESSHHHH
T ss_pred             ceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc-----------CCcHHHHHhcCCCcCcC
Confidence             455566  99999999999999998885 355444444444444321           89999999999999875

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PLN00212 glutelin; Provisional

Probab=99.94  E-value=7.7e-26  Score=224.04  Aligned_cols=159  Identities=16%  Similarity=0.284  Sum_probs=133.1

Q ss_pred             eecCCCCCee-ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545          161 NFANFPADFC-VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL-  238 (325)
Q Consensus       161 nl~~~~p~~~-~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~-  238 (325)
                      +|.+.+|+.. ..+||.+..|| .+.+.|+|+|+++.|++|+|+|+++|||| ||++++||++|+|.++++.|+|..++ 
T Consensus        48 ~l~a~ep~~ri~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~  125 (493)
T PLN00212         48 RLQAFEPLRKVRSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQ  125 (493)
T ss_pred             ccccCCCchhhcccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhh
Confidence            4555667643 35899999999 66899999999999999999999999997 99999999999999999998764333 


Q ss_pred             ---e--------------------EEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------CceeeecCc--
Q 020545          239 ---D--------------------SEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------PALGKLGGK--  284 (325)
Q Consensus       239 ---~--------------------~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p~~~~laG~--  284 (325)
                         .                    ++|++|||++||+|++||++| |+++++++.+++..|        +..+||||.  
T Consensus       126 ~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~  205 (493)
T PLN00212        126 QQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNN  205 (493)
T ss_pred             hhcccccccccccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCc
Confidence               1                    489999999999999999877 778887776665433        457889996  


Q ss_pred             ---------------cccccCCCHHHHHHHcCCCHHHHHHhhhccC-CceEec
Q 020545          285 ---------------QSVMNGFSASVVQLALNVNEEFLKFFKENVA-TSEILI  321 (325)
Q Consensus       285 ---------------~svl~~~~~evla~af~v~~~~v~~l~~~~~-~~~i~~  321 (325)
                                     +++|++|++++|++|||++.+++++|+..++ .+.|+.
T Consensus       206 ~~~~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVr  258 (493)
T PLN00212        206 RQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIR  258 (493)
T ss_pred             cccccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEE
Confidence                           3599999999999999999999999997763 355653

>smart00835 Cupin_1 Cupin

Probab=99.90  E-value=1.9e-22  Score=171.48  Aligned_cols=138  Identities=28%  Similarity=0.496  Sum_probs=125.2

Q ss_pred             eccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEE
Q 020545          170 CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLV  249 (325)
Q Consensus       170 ~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~v  249 (325)
                      ++.++|+++.+++.++|.+++.++.+.++++.||++..||||+++.|+.||++|++.+.+.+..|++.....+++||+++
T Consensus         7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~   86 (146)
T smart00835        7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV   86 (146)
T ss_pred             ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence            45689999999999999999999999999999999999999999999999999999999999876677778899999999


Q ss_pred             ECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHH
Q 020545          250 VPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFL  307 (325)
Q Consensus       250 vP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v  307 (325)
                      ||+|..|+..| ++++++++.+..++.+..++++|.+++|.+|++++++++|+++++++
T Consensus        87 ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (146)
T smart00835       87 VPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             ECCCCEEEEEcCCCCCEEEEEEecCCCCceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence            99999998766 67889998776665556678899899999999999999999999875

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.88  E-value=5.7e-22  Score=191.94  Aligned_cols=147  Identities=15%  Similarity=0.151  Sum_probs=124.0

Q ss_pred             ceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce
Q 020545          157 LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL  236 (325)
Q Consensus       157 ~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~  236 (325)
                      ++.|++...++.    .||++++++..+||+|+.  +++.+++|.|||+++|||| ++.||.||++|++++++++.+|+ 
T Consensus        37 ~~~~~~~~~~~~----~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~-  108 (367)
T TIGR03404        37 KWSFSDSHNRLE----NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGR-  108 (367)
T ss_pred             eeeeccccCccc----cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCc-
Confidence            456666655543    589999999999999986  6999999999999999999 56799999999999999998764 


Q ss_pred             EEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCC---CceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhc
Q 020545          237 VLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTR---PALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKEN  313 (325)
Q Consensus       237 ~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~---p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~  313 (325)
                      .+..+|++||+++||+|.+|++.+.+++++++.+++...   +..+.+   +++|+.+|++||+++|+++++++++|++.
T Consensus       109 ~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~~~f~~~~~~~~---~~~l~~~p~~Vla~~f~l~~~~~~~l~~~  185 (367)
T TIGR03404       109 NYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDGTFLV---TDWLAHTPKDVLAKNFGVPESAFDNLPLK  185 (367)
T ss_pred             EEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCCcccCCcceeeH---HHHHHhCCHHHHHHHhCCCHHHHHhcccc
Confidence            565589999999999999999877667788888777754   233334   57788899999999999999999999876


Q ss_pred             c
Q 020545          314 V  314 (325)
Q Consensus       314 ~  314 (325)
                      +
T Consensus       186 ~  186 (367)
T TIGR03404       186 E  186 (367)
T ss_pred             C
Confidence            4

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.82  E-value=1.1e-19  Score=160.25  Aligned_cols=194  Identities=17%  Similarity=0.198  Sum_probs=156.8

Q ss_pred             ChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCC--CcccCC-CCCCCceeeeecCCCCCeeccCCeEEEEEcCCC
Q 020545          108 SSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEK--IPLPHQ-HGNANLMVNNFANFPADFCVKKAGMVTSFTGSN  184 (325)
Q Consensus       108 ~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~--~~~~~p-~~~~~~~~~nl~~~~p~~~~~~gG~~~~~~~~~  184 (325)
                      +.+++.+.|+++.+++..+..++  .+|.|.+.++...  ...-.+ ......+.|.+...+|...   +|.++......
T Consensus         2 ~~~~~~~~~~vd~~~~~~~p~~~--~~i~~~~~~~~l~~d~~~~~~~~~~~~~~~yel~~~~~~~~---~g~L~~~~t~~   76 (209)
T COG2140           2 PKLFEPKNFGVDVRTGKLLPLKQ--VYIKRGSDPGGLYADEDAYSMLRKKEDDFVYELLESEPGER---GGDLRLDVTRI   76 (209)
T ss_pred             CceeccccccchhhhhhcCCccc--eeEEeccCCcccccCHHHHHHhcCCCCceEEEeeccccccc---CCeEEEEeecc
Confidence            56788999999999988887776  4687766643110  000000 0124579999999888763   89999999999


Q ss_pred             CcccccccceEEEEEecCCCccCCeecCCCCE--EEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-C
Q 020545          185 FPFLEQVGLSCTILKLDANAMLSPTYTADSVQ--VFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-G  261 (325)
Q Consensus       185 ~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~e--i~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g  261 (325)
                      +|..     +.+.+.+.||+|++.||||+|+|  |.||++|+|++.+..++|+ ....++++||+++||.++.|+..| |
T Consensus        77 ~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~-~~v~~~~~Gd~iyVPp~~gH~t~N~G  150 (209)
T COG2140          77 FPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGE-ARVIAVRAGDVIYVPPGYGHYTINTG  150 (209)
T ss_pred             CCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCc-EEEEEecCCcEEEeCCCcceEeecCC
Confidence            9886     56778999999999999999999  9999999999999999985 455689999999999999999665 8


Q ss_pred             CCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccC
Q 020545          262 PEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA  315 (325)
Q Consensus       262 ~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~  315 (325)
                      +++++++.++..+.+....+   ..++.+++..+++..|+.+....+.++.+..
T Consensus       151 d~pLvf~~v~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~D~p~~~~~  201 (209)
T COG2140         151 DEPLVFLNVYPADAGQDYDL---IAWLGGMPPVLVENGLNKNPKYVDVPRIKFA  201 (209)
T ss_pred             CCCEEEEEEEeCCCCceeee---eehhccCCceeeccccccCcccccCcccccc
Confidence            89999999998888776566   6888999999999999999888777755443

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.76  E-value=2.9e-18  Score=145.39  Aligned_cols=101  Identities=20%  Similarity=0.352  Sum_probs=78.1

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEE--EeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVL--GLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~--~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +++++++.|||++|++|.||++|+ |+++++.+++.....+....  ++++|||++||+|++||++|+++++...+.+++
T Consensus        41 i~pg~~~~Ph~h~a~~i~~V~~G~-~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~  119 (144)
T PF00190_consen   41 IEPGGLRAPHYHNADEIVYVIEGR-GRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFD  119 (144)
T ss_dssp             EETTEEEEEEEESSEEEEEEEESE-EEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEE
T ss_pred             hhcCCccceeEeeeeEEeeeeccc-eEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEE
Confidence            478999999977999999999999 99999999851000012233  499999999999999999999977666666665


Q ss_pred             cCCCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHH
Q 020545           83 TSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEA  123 (325)
Q Consensus        83 ~~~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~  123 (325)
                      +++..+                 .+|++||+++|+++.++.
T Consensus       120 ~~~~~~-----------------~l~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen  120 TNNPPN-----------------QLPPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             ESSTTG-----------------ESSHHHHHHHEESSHHHH
T ss_pred             CCCCcc-----------------cCCcHHHHHhcCCCcCcC
Confidence            543221                 199999999999999874

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>smart00835 Cupin_1 Cupin

Probab=99.65  E-value=1.6e-15  Score=128.87  Aligned_cols=107  Identities=25%  Similarity=0.381  Sum_probs=89.1

Q ss_pred             ccceeecccc-CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545            6 YVHIIVCLTE-NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus         6 ~~~~~~~p~h-~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      .+.....||+ .++.|++||++|+ +.+.+.++++    .+++.+.+++||+++||+|..||+.|.++++++++++. ..
T Consensus        38 ~pg~~~~~h~H~~~~e~~~Vl~G~-~~~~~~~~~~----~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~-~~  111 (146)
T smart00835       38 EPGGMLPPHYHPRATELLYVVRGE-GRVGVVDPNG----NKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFN-TN  111 (146)
T ss_pred             cCCcCcCCeeCCCCCEEEEEEeCe-EEEEEEeCCC----CeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEe-cC
Confidence            4455667884 4689999999999 9999987643    25567899999999999999999999999999999754 32


Q ss_pred             CCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHH
Q 020545           85 RAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEA  123 (325)
Q Consensus        85 ~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~  123 (325)
                         +|.  ..|+++|..++|++|++++++++|+++.+++
T Consensus       112 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (146)
T smart00835      112 ---DPN--RRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             ---CCC--ceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence               232  4688888889999999999999999999875

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.40  E-value=8e-11  Score=109.44  Aligned_cols=176  Identities=16%  Similarity=0.199  Sum_probs=116.1

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCccee
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY   94 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~   94 (325)
                      |....+.+||++|+ ..+.+   ++      + .+.|++||.+++|+|..|.+.|.++++++++.+..           .
T Consensus        77 ~~g~ee~iyVl~G~-l~v~~---~g------~-~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k-----------~  134 (260)
T TIGR03214        77 GEGIETFLFVISGE-VNVTA---EG------E-THELREGGYAYLPPGSKWTLANAQAEDARFFLYKK-----------R  134 (260)
T ss_pred             CCceEEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEe-----------e
Confidence            33457999999999 88876   42      3 57999999999999999999999999999988762           2


Q ss_pred             ee-eccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccC
Q 020545           95 FL-LTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKK  173 (325)
Q Consensus        95 f~-laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~  173 (325)
                      |. +.       +.                     .. ...++. +..   ..   .+      ..+      +   ...
T Consensus       135 y~~~~-------g~---------------------~~-~~~vvg-~~~---dv---~~------~~~------~---g~~  163 (260)
T TIGR03214       135 YQPVE-------GL---------------------HA-PELVVG-NEK---DI---EP------EPY------E---GMD  163 (260)
T ss_pred             eEEcC-------CC---------------------CC-CCeeec-CHH---HC---Cc------ccc------C---CCC
Confidence            21 11       11                     00 011111 110   00   00      000      0   012


Q ss_pred             CeEEEEEcCCCCcccccccceEEEEEecCCCccCC-eecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545          174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSP-TYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR  252 (325)
Q Consensus       174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~P-h~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~  252 (325)
                      +..++.+-+++.   .. ++.+..++++||+-... |.|. -.+..||++|+|.+.+   +|+ .  .++++||+++||+
T Consensus       164 ~~~~~~llp~~~---~~-~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~---~g~-~--~~V~~GD~i~i~~  232 (260)
T TIGR03214       164 DVILTTLLPKEL---AF-DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNL---DNN-W--VPVEAGDYIWMGA  232 (260)
T ss_pred             cEEEEEeCchhc---CC-CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEE---CCE-E--EEecCCCEEEECC
Confidence            233433332222   22 56788899999999874 5555 4466699999999854   332 2  3699999999999


Q ss_pred             ccEEEEEc-CCCCEEEEEEeCCC
Q 020545          253 CFVVAIIA-GPEGIECFSITTST  274 (325)
Q Consensus       253 G~~h~~~~-g~~~~~~~~~~~s~  274 (325)
                      +.+|+..| |+++++++--.+-+
T Consensus       233 ~~~h~~~~~G~~~~~~l~ykd~n  255 (260)
T TIGR03214       233 YCPQACYAGGRGEFRYLLYKDMN  255 (260)
T ss_pred             CCCEEEEecCCCcEEEEEEcccc
Confidence            99999877 78889988765543

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=99.36  E-value=2e-10  Score=107.20  Aligned_cols=179  Identities=18%  Similarity=0.251  Sum_probs=119.1

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCccee
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY   94 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~   94 (325)
                      |....|+.||++|+ +.+.+   ++      + .+.|++||.+++|++.+|.+.|.++++++++++..   ...|     
T Consensus        80 ~~~~eE~~~VlsG~-l~v~~---~g------~-~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~---~y~~-----  140 (266)
T PRK11171         80 DEGAETFLFVVEGE-ITLTL---EG------K-THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK---RYEP-----  140 (266)
T ss_pred             CCCceEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc---CCeE-----
Confidence            33568999999999 88887   42      3 58999999999999999999999999999998862   1111     


Q ss_pred             eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccCC
Q 020545           95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKA  174 (325)
Q Consensus        95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~g  174 (325)
                        +.       +..                     .. ..|+.-..    .                +...+.  ....|
T Consensus       141 --~~-------~~~---------------------~p-~~~~~~~~----d----------------~~~~~~--~g~~g  167 (266)
T PRK11171        141 --VE-------GHE---------------------AP-EAFVGNES----D----------------IEPIPM--PGTDG  167 (266)
T ss_pred             --cC-------CCC---------------------CC-CeEecchh----c----------------cccccc--CCCCC
Confidence              00       110                     00 11221111    0                000000  01122


Q ss_pred             eEEEE--EcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545          175 GMVTS--FTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR  252 (325)
Q Consensus       175 G~~~~--~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~  252 (325)
                      ..++.  +++.+.    ..++.+..++|.||+-...|-|....|..||++|++.+.+   ++ +.  ..|++||++.+|.
T Consensus       168 ~~~~~~~~~p~~~----~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~-~~--~~l~~GD~i~~~~  237 (266)
T PRK11171        168 VWATTRLVDPEDL----RFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NN-DW--VEVEAGDFIWMRA  237 (266)
T ss_pred             eEEEEEeeCchhc----CCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CC-EE--EEeCCCCEEEECC
Confidence            22222  222111    1235788999999998888523457799999999999975   23 23  3699999999999


Q ss_pred             ccEEEEEc-CCCCEEEEEEeCCCC
Q 020545          253 CFVVAIIA-GPEGIECFSITTSTR  275 (325)
Q Consensus       253 G~~h~~~~-g~~~~~~~~~~~s~~  275 (325)
                      +.+|+..| |++.++++...+-++
T Consensus       238 ~~~h~~~N~g~~~~~yl~~k~~nr  261 (266)
T PRK11171        238 YCPQACYAGGPGPFRYLLYKDVNR  261 (266)
T ss_pred             CCCEEEECCCCCcEEEEEEccccc
Confidence            99999766 888899988776543

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.09  E-value=4.1e-10  Score=99.83  Aligned_cols=99  Identities=24%  Similarity=0.309  Sum_probs=80.2

Q ss_pred             cccCCCCe--EEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           13 LTENDLHV--IPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        13 p~h~~a~e--i~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      +-|++++|  |+||++|+ |.+.+-.+++     +..+.++++||+++||++..|+..|+|+++|+++.++...   .. 
T Consensus        96 H~Hp~ade~E~y~vi~G~-g~m~v~~~~G-----~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~---~~-  165 (209)
T COG2140          96 HYHPNADEPEIYYVLKGE-GRMLVQKPEG-----EARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD---AG-  165 (209)
T ss_pred             ccCCCCCcccEEEEEecc-EEEEEEcCCC-----cEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC---CC-
Confidence            33788887  99999999 9999988876     6678999999999999999999999999999999998432   12 


Q ss_pred             cceeeeeccccccccCCChhHHhhhcCCCHHHHHHH
Q 020545           91 EFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKIL  126 (325)
Q Consensus        91 ~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l  126 (325)
                        +.+.+.   .++++++..+++..|+.+....|.+
T Consensus       166 --~~y~~~---~~~~~~~~~~~~~~~~~~~~~~D~p  196 (209)
T COG2140         166 --QDYDLI---AWLGGMPPVLVENGLNKNPKYVDVP  196 (209)
T ss_pred             --ceeeee---ehhccCCceeeccccccCcccccCc
Confidence              233333   6778899999999987776655544

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=99.03  E-value=3.7e-09  Score=101.08  Aligned_cols=214  Identities=14%  Similarity=0.138  Sum_probs=120.3

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCc
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGE   91 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~   91 (325)
                      .||-+.+..+.||++|+ |..+.|  ++      + ....++||+|++|.+.-|-..|.+++++..+.+.|..-..    
T Consensus        95 ~~HRht~sAl~~vveG~-G~~t~V--~g------~-~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD~Pl~~----  160 (335)
T TIGR02272        95 PSHRHTQSALRFIVEGK-GAFTAV--DG------E-RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLDIPLVQ----  160 (335)
T ss_pred             CccccccceEEEEEEcC-ceEEEE--CC------E-EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCCHHHHH----
Confidence            45666788999999999 976666  32      3 4789999999999999999999999998887766531110    


Q ss_pred             ceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecC-------
Q 020545           92 FSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFAN-------  164 (325)
Q Consensus        92 ~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~-------  164 (325)
                         + | |. +.+-..+.+.- ..-.-+.+...+     .......+.... +.  ...|     -+.|....       
T Consensus       161 ---~-l-~~-~f~e~~~~~~~-~~~~~~~~~~~~-----~g~~l~P~~~~~-~~--~~sP-----~~~ypw~~~~~aL~~  220 (335)
T TIGR02272       161 ---L-F-DC-SFAEGYPEDQQ-PVTRPEGDSLAR-----YGHNMLPVRHKR-SD--RSSP-----IFNYPYERSREALDD  220 (335)
T ss_pred             ---h-h-Cc-ceecccccccc-ccccCCcchhhh-----cccCcccccccc-CC--CCCC-----ceecCcHHHHHHHHH
Confidence               0 0 00 11111111000 000000000000     000111111100 00  0011     12222211       


Q ss_pred             ----CCCCeeccCCeEEEEEcCCCCc-ccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEe
Q 020545          165 ----FPADFCVKKAGMVTSFTGSNFP-FLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLD  239 (325)
Q Consensus       165 ----~~p~~~~~~gG~~~~~~~~~~p-~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~  239 (325)
                          .+++-.  +|=.+..+++.+-+ .+.++  +.....|.+|....+|=| .+..|.||++|+|++.|   ++ +.+ 
T Consensus       221 ~~~~~~~~~~--~g~~l~y~NP~TG~~~~pti--~~~~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~-~~~-  290 (335)
T TIGR02272       221 LTRTGEWDPW--HGLKLRYVNPATGGYPMPTI--GAFIQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GD-AVF-  290 (335)
T ss_pred             HHhccCCCCC--ceEEEEEeCCCCCCCcchhH--HHHHhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CC-EEE-
Confidence                022211  23345666655544 34443  445567888888888876 46799999999999998   33 445 


Q ss_pred             EEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          240 SEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       240 ~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                       +.++||+|+||..+.|...+. +++.++.+.
T Consensus       291 -~W~~gD~f~vPsW~~~~h~a~-~da~Lf~~~  320 (335)
T TIGR02272       291 -RFSPKDVFVVPSWHPVRFEAS-DDAVLFSFS  320 (335)
T ss_pred             -EecCCCEEEECCCCcEecccC-CCeEEEEec
Confidence             599999999999988655443 455555543

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.91  E-value=2.6e-08  Score=88.35  Aligned_cols=86  Identities=16%  Similarity=0.255  Sum_probs=71.1

Q ss_pred             cccccceEEEEEecCCCc------cCCeecCCCC--EEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545          188 LEQVGLSCTILKLDANAM------LSPTYTADSV--QVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII  259 (325)
Q Consensus       188 L~~~gis~~~v~l~pg~~------~~Ph~h~~A~--ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~  259 (325)
                      ++.-++.+....|.||..      ..+|||++++  |+.||++|+|.+.+-+.+|. .....+++||+++||+|+.|...
T Consensus        63 ~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~-~~~~~v~pGd~v~IPpg~~H~~i  141 (191)
T PRK04190         63 ETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE-ARWIEMEPGTVVYVPPYWAHRSV  141 (191)
T ss_pred             CcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc-EEEEEECCCCEEEECCCCcEEeE
Confidence            445578999999999995      6679999664  99999999999999777654 33457999999999999999865


Q ss_pred             c-CCCCEEEEEEeCCC
Q 020545          260 A-GPEGIECFSITTST  274 (325)
Q Consensus       260 ~-g~~~~~~~~~~~s~  274 (325)
                      | |+++++++.+....
T Consensus       142 N~G~epl~fl~v~p~~  157 (191)
T PRK04190        142 NTGDEPLVFLACYPAD  157 (191)
T ss_pred             ECCCCCEEEEEEEcCC
Confidence            5 88899998887653

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=4.7e-09  Score=87.26  Aligned_cols=60  Identities=17%  Similarity=0.246  Sum_probs=53.3

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +++|...+|+.||++|+ |.+.+   ++      + ...|++||.++||+|+.|++.|.|+.+|+++++..
T Consensus        51 ~~~H~~~dE~~~Vl~G~-g~v~~---~~------~-~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~  110 (127)
T COG0662          51 LHHHHHRDEHWYVLEGT-GKVTI---GG------E-EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQS  110 (127)
T ss_pred             cccccCcceEEEEEeeE-EEEEE---CC------E-EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEec
Confidence            45566799999999999 99998   53      3 58899999999999999999999999999999864

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=98.90  E-value=6e-09  Score=76.74  Aligned_cols=69  Identities=19%  Similarity=0.380  Sum_probs=58.8

Q ss_pred             EEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEe
Q 020545          197 ILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSIT  271 (325)
Q Consensus       197 ~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~  271 (325)
                      +++|.||+-..+|+|+...++.||++|++.+. ++  ++ .  ..|++||.+++|+|..|...| ++++++++.++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~--~~-~--~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD--GE-R--VELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET--TE-E--EEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec--cE-E--eEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            57899999999999998889999999999998 44  22 2  369999999999999998666 77888888764

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=98.73  E-value=4.6e-08  Score=71.96  Aligned_cols=64  Identities=19%  Similarity=0.177  Sum_probs=52.2

Q ss_pred             cceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            7 VHIIVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         7 ~~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      +..-..+| |...+++.||++|+ +.+.+   ++      + ...+++||.+++|+|..|.+.|.++++++++.++
T Consensus         7 pG~~~~~h~H~~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    7 PGGSIPPHRHPGEDEFFYVLSGE-GTLTV---DG------E-RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             TTEEEEEEEESSEEEEEEEEESE-EEEEE---TT------E-EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             CCCCCCCEECCCCCEEEEEEECC-EEEEE---cc------E-EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            34445556 44445999999999 99884   43      3 5889999999999999999999999999998875

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.65  E-value=1.5e-07  Score=83.52  Aligned_cols=61  Identities=21%  Similarity=0.164  Sum_probs=52.3

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      +.+|++||++|+ |.+-+-+.++     .-....+++||+++||+|..|.+.|+|+++++++++...
T Consensus        96 ~~~EiyyvlsG~-g~~~l~~~~G-----~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p~  156 (191)
T PRK04190         96 DRAEIYYGLKGK-GLMLLQDPEG-----EARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYPA  156 (191)
T ss_pred             CCCEEEEEEeCE-EEEEEecCCC-----cEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEcC
Confidence            346999999999 9999865543     334689999999999999999999999999999999853

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.63  E-value=6.7e-07  Score=83.03  Aligned_cols=219  Identities=16%  Similarity=0.109  Sum_probs=131.8

Q ss_pred             ccccC-CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           12 CLTEN-DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        12 ~p~h~-~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      .|.|. +.+.+.+|++|+ |..++|+.+      +   -.+++||.+..|++.-|---|.|++++..+-.+|..-.+   
T Consensus       105 ApsHrHsqsAlRFvveG~-Ga~T~VdGe------r---~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDiplv~---  171 (351)
T COG3435         105 APSHRHNQSALRFVVEGK-GAYTVVDGE------R---TPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPLVN---  171 (351)
T ss_pred             CCcccccccceEEEEecc-ceeEeecCc------e---eeccCCCEEEccCceeccCCCCCCCceEEEcccchHHHH---
Confidence            34443 568999999999 999999543      2   459999999999999999999999999998777642111   


Q ss_pred             cceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCC----CCc-eeeeecC-
Q 020545           91 EFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGN----ANL-MVNNFAN-  164 (325)
Q Consensus        91 ~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~----~~~-~~~nl~~-  164 (325)
                          ++-+   ..|.-.+++...-.-...... .+    . ......+.....   .-.+|-.+    +.+ -.-.|.. 
T Consensus       172 ----~l~~---gFfe~~~e~~q~v~~~~~d~~-ar----~-~~~~rP~~~r~~---~~~SPlf~Y~w~~t~eAL~~la~~  235 (351)
T COG3435         172 ----SLGA---GFFEEHPEEQQPVTRPEGDSL-AR----Y-GPGMRPLRHRWG---KPYSPLFNYAWDRTREALERLARL  235 (351)
T ss_pred             ----hhcc---cccccCchhcCcccCCCCCch-hh----c-CCCccccccCCC---CCCCcccccccccHHHHHHHHHhc
Confidence                1111   333334444333222211111 11    0 001111111000   00112110    000 0001111 


Q ss_pred             CCCCeeccCCeEEEEEcCCC--CcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEe
Q 020545          165 FPADFCVKKAGMVTSFTGSN--FPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEV  242 (325)
Q Consensus       165 ~~p~~~~~~gG~~~~~~~~~--~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l  242 (325)
                      .+||-.  +|-.++.+++.+  .+. .  -|++..-.|.||-.--+|=|.++ .|--|.+|+|++.|=   | ++|  +.
T Consensus       236 e~~dp~--dG~~~ryvNP~TGg~~m-p--tI~a~mqlL~~Gf~~~~~r~t~s-~iy~V~eGsg~~~Ig---~-~rf--~~  303 (351)
T COG3435         236 EEPDPF--DGYKMRYVNPVTGGYAM-P--TIGAFMQLLPPGFHGKAHRHTDS-TIYHVVEGSGYTIIG---G-ERF--DW  303 (351)
T ss_pred             cCCCCC--CcceEEEecCCCCCCcC-c--hHHHHHHhcCCcccCCceeccCC-EEEEEEecceeEEEC---C-EEe--ec
Confidence            124433  566777777654  222 2  25666667888988899998766 677789999998762   2 456  48


Q ss_pred             cCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          243 EAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       243 ~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      ++||+|+||.=+.|-..||.+++.+|+|.
T Consensus       304 ~~~D~fvVPsW~~~~~~~gs~da~LFsfs  332 (351)
T COG3435         304 SAGDIFVVPSWAWHEHVNGSEDAVLFSFS  332 (351)
T ss_pred             cCCCEEEccCcceeecccCCcceEEEecC
Confidence            99999999999888888998888877764

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.61  E-value=5.3e-07  Score=74.79  Aligned_cols=77  Identities=16%  Similarity=0.279  Sum_probs=63.8

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .++++.+.+|+||+-...|+|.. .|+.||++|++.+..++. + +.  ..|++||.+++|++.+|...|. ++++++.+
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~-g-~~--~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~v  106 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT-G-EV--HPIRPGTMYALDKHDRHYLRAG-EDMRLVCV  106 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC-C-EE--EEeCCCeEEEECCCCcEEEEcC-CCEEEEEE
Confidence            46789999999999888899865 599999999999985532 2 23  3699999999999999998776 88888887


Q ss_pred             eCC
Q 020545          271 TTS  273 (325)
Q Consensus       271 ~~s  273 (325)
                      ++-
T Consensus       107 ~tP  109 (125)
T PRK13290        107 FNP  109 (125)
T ss_pred             ECC
Confidence            763

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=9.9e-07  Score=73.25  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=67.4

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ..+++++.+.||+-..+|.|.+.+|+.||++|+|.+.+=   + +.+  .|++||.++||+|.+|...| |..++.++.+
T Consensus        35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~---~-~~~--~v~~gd~~~iP~g~~H~~~N~G~~~L~liei  108 (127)
T COG0662          35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG---G-EEV--EVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV  108 (127)
T ss_pred             cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC---C-EEE--EecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence            568999999999999999999999999999999999875   2 233  59999999999999999777 7888999988


Q ss_pred             eCCCC
Q 020545          271 TTSTR  275 (325)
Q Consensus       271 ~~s~~  275 (325)
                      .....
T Consensus       109 ~~p~~  113 (127)
T COG0662         109 QSPPY  113 (127)
T ss_pred             ecCCc
Confidence            76544

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.53  E-value=8.3e-07  Score=73.76  Aligned_cols=79  Identities=22%  Similarity=0.350  Sum_probs=63.8

Q ss_pred             ccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEE
Q 020545          189 EQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIEC  267 (325)
Q Consensus       189 ~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~  267 (325)
                      ..-.+.+..+.+.||+....|.||-..+.+||++|++++++=   |+ .  ..+++||++++|+|..|+..| +++....
T Consensus        39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~-~--~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~  112 (131)
T COG1917          39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE-K--KELKAGDVIIIPPGVVHGLKAVEDEPMVL  112 (131)
T ss_pred             CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC-c--eEecCCCEEEECCCCeeeeccCCCCceeE
Confidence            345678999999999999999999788999999999999987   22 2  259999999999999999876 4444455


Q ss_pred             EEEeCC
Q 020545          268 FSITTS  273 (325)
Q Consensus       268 ~~~~~s  273 (325)
                      +.+...
T Consensus       113 l~v~~~  118 (131)
T COG1917         113 LLVFPL  118 (131)
T ss_pred             EEEeee
Confidence            555443

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.48  E-value=6.2e-07  Score=75.93  Aligned_cols=62  Identities=21%  Similarity=0.195  Sum_probs=52.0

Q ss_pred             ccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCC--CeEEEEecCCCCEEEEEEeecC
Q 020545           12 CLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLG--SASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus        12 ~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G--~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      ++| |..-+|++||++|+ +.+-+   ++     .  ...|++||.+-||+|  .+|.+.|.++..++.+|+.+..
T Consensus        57 ~~H~Hs~edEfv~ILeGE-~~l~~---d~-----~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r~  121 (161)
T COG3837          57 LRHWHSAEDEFVYILEGE-GTLRE---DG-----G--ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGTRE  121 (161)
T ss_pred             cccccccCceEEEEEcCc-eEEEE---CC-----e--eEEecCCceeeccCCCcceeEEeecCCceEEEEEecccc
Confidence            356 44458999999999 87766   53     3  478999999999999  9999999999999999998654

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.44  E-value=8.6e-07  Score=82.50  Aligned_cols=59  Identities=12%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      ||+.-.+..||++|+ |++.+   ++      + ...|++||++++|+|.+||++|+|+++++++.--|.
T Consensus       196 ~~H~~eh~~yiL~G~-G~~~~---~g------~-~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd~  254 (260)
T TIGR03214       196 ETHVMEHGLYVLEGK-GVYNL---DN------N-WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKDM  254 (260)
T ss_pred             ccccceeEEEEEece-EEEEE---CC------E-EEEecCCCEEEECCCCCEEEEecCCCcEEEEEEccc
Confidence            455567889999999 99877   53      3 588999999999999999999999999999866544

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.41  E-value=8.8e-07  Score=73.61  Aligned_cols=62  Identities=19%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             eeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .+-.|.++ ..+..||++|+ +++.+   ++      + .+.+++||++++|+|..||+.|.+++....+++..
T Consensus        55 ~~~~H~hp~~~~~~~Vl~G~-~~~~~---~g------~-~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~  117 (131)
T COG1917          55 VIPWHTHPLGEQTIYVLEGE-GTVQL---EG------E-KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFP  117 (131)
T ss_pred             ccccccCCCcceEEEEEecE-EEEEe---cC------C-ceEecCCCEEEECCCCeeeeccCCCCceeEEEEee
Confidence            34455444 67999999999 99998   32      2 47899999999999999999999998777777764

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.39  E-value=1.4e-06  Score=72.30  Aligned_cols=55  Identities=18%  Similarity=0.154  Sum_probs=45.9

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ...|++||++|+ +.+..+  ++     .+ +..|++||.+++|++.+|++.|.  ++++++|++.
T Consensus        54 ~~~E~~yVL~G~-~~~~~i--~~-----g~-~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~t  108 (125)
T PRK13290         54 NHLEAVYCIEGE-GEVEDL--AT-----GE-VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFN  108 (125)
T ss_pred             CCEEEEEEEeCE-EEEEEc--CC-----CE-EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEEC
Confidence            346999999999 888833  21     13 58899999999999999999997  7999999984

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.33  E-value=8.9e-06  Score=69.65  Aligned_cols=86  Identities=17%  Similarity=0.281  Sum_probs=72.9

Q ss_pred             CeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      .|+.+.++..       -+..+.++++.||..+..|+|..-+|.-+|++|+|.+++   ++ +.+  .+++||.++||+|
T Consensus        51 WG~~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~-~~~--~~~~g~sv~Ip~g  117 (151)
T PF01050_consen   51 WGSYEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD-EEF--TLKEGDSVYIPRG  117 (151)
T ss_pred             CcEEEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC-EEE--EEcCCCEEEECCC
Confidence            5888888743       245689999999999999999999999999999999996   23 333  5999999999999


Q ss_pred             cEEEEEc-CCCCEEEEEEeC
Q 020545          254 FVVAIIA-GPEGIECFSITT  272 (325)
Q Consensus       254 ~~h~~~~-g~~~~~~~~~~~  272 (325)
                      ..|...| |+.+++++.+-.
T Consensus       118 ~~H~i~n~g~~~L~~IEVq~  137 (151)
T PF01050_consen  118 AKHRIENPGKTPLEIIEVQT  137 (151)
T ss_pred             CEEEEECCCCcCcEEEEEec
Confidence            9999877 788899998743

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.27  E-value=5.3e-06  Score=70.36  Aligned_cols=82  Identities=10%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             cccccccceEEEEEecCCC-ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc--cEEEEEc-C
Q 020545          186 PFLEQVGLSCTILKLDANA-MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC--FVVAIIA-G  261 (325)
Q Consensus       186 p~L~~~gis~~~v~l~pg~-~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G--~~h~~~~-g  261 (325)
                      -.|+  .+++....++||+ -..+|||..-.|++||++|++.+-+=  ++ .   ..|++||++-+|+|  .+|+.+| +
T Consensus        37 ~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d--~~-e---~~lrpGD~~gFpAG~~~aHhliN~s  108 (161)
T COG3837          37 LGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED--GG-E---TRLRPGDSAGFPAGVGNAHHLINRS  108 (161)
T ss_pred             cChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEEC--Ce-e---EEecCCceeeccCCCcceeEEeecC
Confidence            3566  4678888999998 56789999999999999999876532  22 2   35999999999999  6787655 7


Q ss_pred             CCCEEEEEEeCCCC
Q 020545          262 PEGIECFSITTSTR  275 (325)
Q Consensus       262 ~~~~~~~~~~~s~~  275 (325)
                      +..++++.+-+...
T Consensus       109 ~~~~~yL~vG~r~~  122 (161)
T COG3837         109 DVILRYLEVGTREP  122 (161)
T ss_pred             CceEEEEEeccccc
Confidence            78899998876543

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.25  E-value=2.5e-06  Score=70.62  Aligned_cols=62  Identities=19%  Similarity=0.325  Sum_probs=54.0

Q ss_pred             CeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeC
Q 020545          208 PTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       208 Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~  272 (325)
                      =|||++|+|+.-|.+|++.+++=.++|+.+   .+.+||+++||+|..|..+...-++..++.+.
T Consensus        58 HHYHs~aHEVl~vlrgqA~l~iGG~~G~el---~v~~GDvlliPAGvGH~rl~sS~DF~VvGaYp  119 (163)
T COG4297          58 HHYHSGAHEVLGVLRGQAGLQIGGADGQEL---EVGEGDVLLIPAGVGHCRLHSSADFQVVGAYP  119 (163)
T ss_pred             ccccCCcceEEEEecceeEEEecCCCCcee---eecCCCEEEEecCcccccccCCCCeEEEcccC
Confidence            389999999999999999999999998654   59999999999999999776667777776653

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.23  E-value=9e-06  Score=69.79  Aligned_cols=67  Identities=19%  Similarity=0.270  Sum_probs=57.8

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ++.=|++..+|+.|++.|+ |++.+..+++     +++.-.+.+||++.||+|+-||+-=+-+-.++.+-+|.
T Consensus        87 F~~EH~H~d~EvRy~vaG~-GiF~v~~~d~-----~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~  153 (181)
T COG1791          87 FLQEHLHTDDEVRYFVAGE-GIFDVHSPDG-----KVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT  153 (181)
T ss_pred             HHHHhccCCceEEEEEecc-eEEEEECCCC-----cEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee
Confidence            3445777889999999999 9999999986     77777899999999999999999666666788888885

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.23  E-value=5.9e-06  Score=71.12  Aligned_cols=66  Identities=17%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEE-EEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIV-LGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~-~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ++-.|.+..+|+.||++|+ |+..+...++      .++ -.+++||+++||+|+.||+.=+.+..++++-+|.
T Consensus        84 f~~EH~H~deEvR~i~~G~-g~Fdvr~~~~------~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~  150 (157)
T PF03079_consen   84 FFEEHTHEDEEVRYIVDGS-GYFDVRDGDD------VWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK  150 (157)
T ss_dssp             HCS-EEESS-EEEEEEECE-EEEEEE-TTC------EEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred             hheeEecChheEEEEeCcE-EEEEEEcCCC------EEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence            4567777789999999999 9999997764      444 6899999999999999999765555788888884

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.21  E-value=5.6e-06  Score=72.97  Aligned_cols=57  Identities=16%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      +|+...|+.||++|+ ..+.+   ++      + .+.|++||.++||++.+|.+.|.++++++++++.
T Consensus       124 ~~h~~~E~~~Vl~G~-~~~~~---~~------~-~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~  180 (185)
T PRK09943        124 IKHQGEEIGTVLEGE-IVLTI---NG------Q-DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH  180 (185)
T ss_pred             cccCCcEEEEEEEeE-EEEEE---CC------E-EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEe
Confidence            355678999999999 88877   42      3 5889999999999999999999999999999876

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=1.2e-05  Score=64.98  Aligned_cols=83  Identities=14%  Similarity=0.267  Sum_probs=67.6

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      +|-+..++|.||+-.--|-|-+-...+||+.|++++-.=+   +.-+...+++||.|+||+|.+|-..| +++.+.++..
T Consensus        45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~---rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa  121 (142)
T COG4101          45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN---RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA  121 (142)
T ss_pred             eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc---ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence            6778899999999999999999999999999999876532   22345678999999999999999544 7888887776


Q ss_pred             eCCCCCc
Q 020545          271 TTSTRPA  277 (325)
Q Consensus       271 ~~s~~p~  277 (325)
                      .+..|+.
T Consensus       122 RsDp~~~  128 (142)
T COG4101         122 RSDPNPQ  128 (142)
T ss_pred             ccCCCCC
Confidence            6655554

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.19  E-value=7.7e-06  Score=82.30  Aligned_cols=59  Identities=14%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      |.|+...|..||++|+ +.+.+   ++      + ++.|++||.++||+|.+|++.|.|+++++++++..
T Consensus       401 ~~H~~~~E~~~VlsG~-~~v~i---dg------~-~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~  459 (478)
T PRK15460        401 QMHHHRAEHWVVVAGT-AKVTI---DG------D-IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRS  459 (478)
T ss_pred             CCCCCCceEEEEEeeE-EEEEE---CC------E-EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence            3344556999999999 99998   53      3 58999999999999999999999999999999973

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.18  E-value=1.3e-05  Score=70.59  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=45.3

Q ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           16 NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .+.+|+++|++|+ |.+=+=+.++.+ -..-....+++||+++||+|.+|-..|+|+++|++.++..
T Consensus        81 ~~~pEvY~vl~G~-g~~lLq~~~~~~-~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~  145 (182)
T PF06560_consen   81 LSYPEVYEVLSGE-GLILLQKEEGDD-VGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVP  145 (182)
T ss_dssp             TT--EEEEEEESS-EEEEEE-TTS------EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEE
T ss_pred             CCCCcEEEEEeCE-EEEEEEecCCCc-ceeEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEe
Confidence            4578999999999 999997655200 0023456899999999999999999999999999998885

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.14  E-value=1.3e-05  Score=80.76  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .|+..+|..||++|+ +.+.+   ++      + +..|++||.++||+|.+|.+.|.|+++++++++..
T Consensus       393 ~H~~~~E~~~Vl~G~-~~v~~---dg------~-~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~  450 (468)
T TIGR01479       393 MHHHRAEHWIVVSGT-ARVTI---GD------E-TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQS  450 (468)
T ss_pred             ccCCCceEEEEEeeE-EEEEE---CC------E-EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence            355667888999999 99987   53      3 58999999999999999999999999999999973

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.13  E-value=3.2e-05  Score=68.00  Aligned_cols=86  Identities=19%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             cccccceEEEEEecCCC------ccCCeecCC------CCEEEEEEeCcEEEEEEeCCCc---eEEeEEecCccEEEECC
Q 020545          188 LEQVGLSCTILKLDANA------MLSPTYTAD------SVQVFYVVKGSGKAQIVGLNAK---LVLDSEVEAGQLLVVPR  252 (325)
Q Consensus       188 L~~~gis~~~v~l~pg~------~~~Ph~h~~------A~ei~yV~~G~~~~~vv~p~g~---~~~~~~l~~Gdv~vvP~  252 (325)
                      |+.-+|......|.||-      |.--|||+.      .+|+-+|++|+|.+-+-.+++.   +.+--++++||+++||.
T Consensus        45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp  124 (182)
T PF06560_consen   45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP  124 (182)
T ss_dssp             -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred             ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence            33344455555555543      455699998      8999999999999999998872   34445799999999999


Q ss_pred             ccEEEEEc-CCCCEEEEEEeCC
Q 020545          253 CFVVAIIA-GPEGIECFSITTS  273 (325)
Q Consensus       253 G~~h~~~~-g~~~~~~~~~~~s  273 (325)
                      +++|..+| |++.+.+.....+
T Consensus       125 ~yaH~tIN~g~~~L~~~~~~~~  146 (182)
T PF06560_consen  125 GYAHRTINTGDEPLVFAAWVPR  146 (182)
T ss_dssp             T-EEEEEE-SSS-EEEEEEEET
T ss_pred             CceEEEEECCCCcEEEEEEEec
Confidence            99998555 8888887776654

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.12  E-value=1.7e-05  Score=79.85  Aligned_cols=75  Identities=13%  Similarity=0.191  Sum_probs=64.4

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ++.+..+++.||+-..+|+|+...|..||++|++.+.+=   | +.+  .|++||.+++|+|.+|...| |+++++++.+
T Consensus       375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d---g-~~~--~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v  448 (468)
T TIGR01479       375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG---D-ETL--LLTENESTYIPLGVIHRLENPGKIPLELIEV  448 (468)
T ss_pred             CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC---C-EEE--EecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            578899999999988999999999999999999999742   3 233  69999999999999998766 8889998887


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       449 ~~  450 (468)
T TIGR01479       449 QS  450 (468)
T ss_pred             Ec
Confidence            65

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK11171 hypothetical protein; Provisional

Probab=98.10  E-value=1.3e-05  Score=74.86  Aligned_cols=60  Identities=13%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      ||+...|.+||++|+ |.+.+   ++      + .+.|++||++.+|++.+||+.|.|+++++++..-|.+
T Consensus       201 ~~~~~ee~i~Vl~G~-~~~~~---~~------~-~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~n  260 (266)
T PRK11171        201 ETHVMEHGLYVLEGK-GVYRL---NN------D-WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVN  260 (266)
T ss_pred             cCCCceEEEEEEeCE-EEEEE---CC------E-EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcccc
Confidence            456678999999999 99987   53      3 5899999999999999999999999999999876543

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.01  E-value=6e-05  Score=66.38  Aligned_cols=75  Identities=12%  Similarity=0.027  Sum_probs=57.5

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      .+.+...++.||+-..+++|....|+.||++|++.+.+=   + +.+  .|++||.+++|.+.+|...| +++.++++.+
T Consensus       106 ~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~---~-~~~--~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~  179 (185)
T PRK09943        106 TLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTIN---G-QDY--HLVAGQSYAINTGIPHSFSNTSAGICRIISA  179 (185)
T ss_pred             eeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEEC---C-EEE--EecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence            356677789999965544444569999999999998762   3 333  59999999999999997666 7778887766


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       180 ~~  181 (185)
T PRK09943        180 HT  181 (185)
T ss_pred             eC
Confidence            53

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.00  E-value=5.7e-05  Score=65.06  Aligned_cols=68  Identities=22%  Similarity=0.281  Sum_probs=51.4

Q ss_pred             ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCC-CEEEEEEeCCC
Q 020545          205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPE-GIECFSITTST  274 (325)
Q Consensus       205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~-~~~~~~~~~s~  274 (325)
                      +...|.|.+ .|+-|+++|+|...+...++. -++-.+++||+++||+|..||...+.. .+.++-+|+.+
T Consensus        84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~-wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~  152 (157)
T PF03079_consen   84 FFEEHTHED-EEVRYIVDGSGYFDVRDGDDV-WIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDE  152 (157)
T ss_dssp             HCS-EEESS--EEEEEEECEEEEEEE-TTCE-EEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSC
T ss_pred             hheeEecCh-heEEEEeCcEEEEEEEcCCCE-EEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCC
Confidence            778999975 799999999999999988764 344568999999999999999877765 48898888653

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=97.99  E-value=4.1e-05  Score=77.12  Aligned_cols=75  Identities=13%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ++.+.++++.||+-...|+|....|..||++|++.+++=+    +.  ..|++||.++||+|.+|...| |+++++++.+
T Consensus       384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg----~~--~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V  457 (478)
T PRK15460        384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG----DI--KLLGENESIYIPLGATHCLENPGKIPLDLIEV  457 (478)
T ss_pred             cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC----EE--EEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            5688999999999888899988889999999999988743    23  369999999999999998766 8889998877


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       458 ~~  459 (478)
T PRK15460        458 RS  459 (478)
T ss_pred             Ec
Confidence            54

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=97.89  E-value=8.8e-05  Score=63.52  Aligned_cols=56  Identities=20%  Similarity=0.287  Sum_probs=49.9

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      |...+|.-+|++|+ |.+.+   ++      + .+.+++||.++||+|..|-+.|.|+.+|+++-+-
T Consensus        81 H~~R~E~W~Vv~G~-a~v~~---~~------~-~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq  136 (151)
T PF01050_consen   81 HHHRSEHWTVVSGT-AEVTL---DD------E-EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ  136 (151)
T ss_pred             ecccccEEEEEeCe-EEEEE---CC------E-EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence            66678999999999 99998   53      3 5889999999999999999999999999999874

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.82  E-value=5.9e-05  Score=64.78  Aligned_cols=51  Identities=14%  Similarity=0.273  Sum_probs=41.4

Q ss_pred             CeecCC-CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          208 PTYTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       208 Ph~h~~-A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      .+||.+ +.|+.|+++|+..+.+.+.+..+.  -.|++||+++||+|.+|.-.+
T Consensus        41 ~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~--v~L~eGd~flvP~gvpHsP~r   92 (159)
T TIGR03037        41 TDFHDDPGEEFFYQLKGEMYLKVTEEGKRED--VPIREGDIFLLPPHVPHSPQR   92 (159)
T ss_pred             cccccCCCceEEEEEcceEEEEEEcCCcEEE--EEECCCCEEEeCCCCCccccc
Confidence            346664 899999999999999888643233  469999999999999998554

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=8.3e-05  Score=60.28  Aligned_cols=59  Identities=14%  Similarity=0.108  Sum_probs=46.8

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      |-......||++|+ ..+-+   ++    --+..-.+++||.|+||+|++|-=+|..++++..+...
T Consensus        64 H~~hEtaIYvlsG~-ah~w~---G~----rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR  122 (142)
T COG4101          64 HEEHETAIYVLSGE-AHTWY---GN----RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR  122 (142)
T ss_pred             cccccEEEEEEece-eeeee---cc----ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence            44567889999999 88877   32    12334589999999999999999999999988766554

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.79  E-value=0.0001  Score=56.91  Aligned_cols=53  Identities=23%  Similarity=0.284  Sum_probs=41.7

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV   80 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~   80 (325)
                      +..-+.||++|. ..+++   +       +..+.+.+||.|.||+|-...+.|.++++++++++
T Consensus        32 ~~~~vF~V~~G~-v~Vti---~-------~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~   84 (85)
T PF11699_consen   32 DNTMVFYVIKGK-VEVTI---H-------ETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV   84 (85)
T ss_dssp             SEEEEEEEEESE-EEEEE---T-------TEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred             CcEEEEEEEeCE-EEEEE---c-------CcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence            467899999999 99999   3       33688999999999999999999999999988753

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.77  E-value=7e-05  Score=65.33  Aligned_cols=58  Identities=5%  Similarity=-0.027  Sum_probs=45.7

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV   80 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~   80 (325)
                      |.+..+|++|+++|+ ..+.+++.+      +.....|++||+|++|+|++|..+..  ++.+.+.+
T Consensus        50 H~~~tdE~FyqleG~-~~l~v~d~g------~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi  107 (177)
T PRK13264         50 HYDPGEEFFYQLEGD-MYLKVQEDG------KRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI  107 (177)
T ss_pred             ccCCCceEEEEECCe-EEEEEEcCC------ceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence            444689999999999 999999854      33468999999999999999988773  34444444

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=97.76  E-value=0.00012  Score=59.35  Aligned_cols=63  Identities=16%  Similarity=0.262  Sum_probs=45.3

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      +.-+.||+++--++.||++|+ |.+.+   ++      + .+.+++||++.+|+|.+|.+.-.+++++..+.+.
T Consensus        13 ~~~~~~h~h~~~~i~~v~~G~-~~~~~---~~------~-~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~   75 (136)
T PF02311_consen   13 NFEFPPHWHDFYEIIYVLSGE-GTLHI---DG------Q-EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY   75 (136)
T ss_dssp             T-SEEEETT-SEEEEEEEEE--EEEEE---TT------E-EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred             CCccCCEECCCEEEEEEeCCE-EEEEE---CC------E-EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence            345678888999999999999 99977   53      3 5899999999999999999999887777666554

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.74  E-value=9.1e-05  Score=63.63  Aligned_cols=51  Identities=10%  Similarity=0.008  Sum_probs=42.3

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG   71 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g   71 (325)
                      |.++.+|++|+++|+ ..+.+.+.+      +.+...|++||++++|+|++|-....+
T Consensus        44 H~~~tdE~FyqleG~-~~l~v~d~g------~~~~v~L~eGd~flvP~gvpHsP~r~~   94 (159)
T TIGR03037        44 HDDPGEEFFYQLKGE-MYLKVTEEG------KREDVPIREGDIFLLPPHVPHSPQRPA   94 (159)
T ss_pred             ccCCCceEEEEEcce-EEEEEEcCC------cEEEEEECCCCEEEeCCCCCcccccCC
Confidence            333589999999999 999988755      334689999999999999999887753

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.73  E-value=0.00011  Score=64.00  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      .||.=..-|+|+ +.|+.|+++|+.++.+.+.+..+  +-.|++||++++|+|.+|.-.+
T Consensus        42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~--~v~L~eGd~fllP~gvpHsP~r   98 (177)
T PRK13264         42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQEDGKRR--DVPIREGEMFLLPPHVPHSPQR   98 (177)
T ss_pred             cCCcccccccCC-CceEEEEECCeEEEEEEcCCcee--eEEECCCCEEEeCCCCCcCCcc
Confidence            455555558865 79999999999999999954213  3469999999999999998544

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=97.66  E-value=0.00042  Score=62.80  Aligned_cols=68  Identities=10%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE-EEEEcCCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV-VAIIAGPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~-h~~~~g~~~~~~~~~  270 (325)
                      .|++....++...+   .||.+-.|+.||++|+.++.+   +|+ .+  .+++||+++||+|.. ||..  ...+.++.+
T Consensus       156 ~m~aGf~~~~~~sf---~wtl~~dEi~YVLEGe~~l~I---dG~-t~--~l~pGDvlfIPkGs~~hf~t--p~~aRflyV  224 (233)
T PRK15457        156 SMAAGFMQWENAFF---PWTLNYDEIDMVLEGELHVRH---EGE-TM--IAKAGDVMFIPKGSSIEFGT--PSSVRFLYV  224 (233)
T ss_pred             ceeeEEEEEecCcc---ceeccceEEEEEEEeEEEEEE---CCE-EE--EeCCCcEEEECCCCeEEecC--CCCeeEEEE
Confidence            46888889998665   499999999999999999998   343 33  599999999999999 5522  224554443

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=97.57  E-value=0.00031  Score=63.64  Aligned_cols=57  Identities=19%  Similarity=0.226  Sum_probs=44.7

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .|+|.+.+|+.||++|+ ..+.+   ++      + .+.+++||+++||+|..|.+.+.+  ..+++++.
T Consensus       169 f~wtl~~dEi~YVLEGe-~~l~I---dG------~-t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~  225 (233)
T PRK15457        169 FPWTLNYDEIDMVLEGE-LHVRH---EG------E-TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA  225 (233)
T ss_pred             cceeccceEEEEEEEeE-EEEEE---CC------E-EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence            46888999999999999 88888   43      3 589999999999999994444433  56666655

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.56  E-value=0.0005  Score=53.14  Aligned_cols=71  Identities=28%  Similarity=0.382  Sum_probs=52.7

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECF  268 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~  268 (325)
                      .++...+.|.|++.-.|.-.-+.+-+.||++|...+++-..    .+  .+.+||+|.||+|-.+.+.| +++.+.++
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~----~f--~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf   82 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET----SF--VVTKGGSFQVPRGNYYSIKNIGNEEAKLF   82 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE----EE--EEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc----EE--EEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence            46899999999999999887788899999999999998542    34  48999999999999988666 77776644

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.53  E-value=0.00064  Score=58.58  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=57.0

Q ss_pred             ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC-CCEEEEEEeCCCC
Q 020545          205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP-EGIECFSITTSTR  275 (325)
Q Consensus       205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~-~~~~~~~~~~s~~  275 (325)
                      +..=|.|. ..|+-|++.|+|...+..++|. ++.-.+.+||.+.||.|.-||.--+. ..++++.+|+...
T Consensus        87 F~~EH~H~-d~EvRy~vaG~GiF~v~~~d~~-~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~  156 (181)
T COG1791          87 FLQEHLHT-DDEVRYFVAGEGIFDVHSPDGK-VYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE  156 (181)
T ss_pred             HHHHhccC-CceEEEEEecceEEEEECCCCc-EEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence            44457874 8899999999999999999974 56667899999999999999976554 4589998887654

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.41  E-value=0.0016  Score=53.43  Aligned_cols=79  Identities=13%  Similarity=0.238  Sum_probs=68.8

Q ss_pred             ccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEE
Q 020545          189 EQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF  268 (325)
Q Consensus       189 ~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~  268 (325)
                      ..+|.|+-...|.+|.-...|| .|--|-+||++|+|++.-+..+  .+  +++++|.++++-+.-.|+..+.. +++.+
T Consensus        31 DgmGFS~h~T~i~aGtet~~~Y-knHlEAvyci~G~Gev~~~~~G--~~--~~i~pGt~YaLd~hD~H~lra~~-dm~~v  104 (126)
T PF06339_consen   31 DGMGFSFHETTIYAGTETHIHY-KNHLEAVYCIEGEGEVEDLDTG--EV--HPIKPGTMYALDKHDRHYLRAKT-DMRLV  104 (126)
T ss_pred             CCCCEEEEEEEEeCCCeeEEEe-cCceEEEEEEeceEEEEEccCC--cE--EEcCCCeEEecCCCccEEEEecC-CEEEE
Confidence            4579999999999999999999 8999999999999999998753  23  36999999999999999988877 88888


Q ss_pred             EEeCC
Q 020545          269 SITTS  273 (325)
Q Consensus       269 ~~~~s  273 (325)
                      .+|+-
T Consensus       105 CVFnP  109 (126)
T PF06339_consen  105 CVFNP  109 (126)
T ss_pred             EEcCC
Confidence            88863

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.38  E-value=0.0048  Score=51.51  Aligned_cols=96  Identities=13%  Similarity=0.027  Sum_probs=57.1

Q ss_pred             CCeEEEEEcCCCCcccccccceEEEEEecC-CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCc-cEEEE
Q 020545          173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAG-QLLVV  250 (325)
Q Consensus       173 ~gG~~~~~~~~~~p~L~~~gis~~~v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~G-dv~vv  250 (325)
                      ..|.+..+...+...+. . -.+..+.-.| |..+.-|+|...+++.+|++|+..+.+-+..+.+.+  .|..- +.+.|
T Consensus        14 ~RG~L~~~e~~~~ipf~-i-~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~--~L~~~~~~L~I   89 (131)
T PF05523_consen   14 ERGSLSVIERFDDIPFE-I-KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEF--ILDEPNKGLYI   89 (131)
T ss_dssp             TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEE--EE--TTEEEEE
T ss_pred             CCCcEEEEeccCCCCCC-c-cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEE--EECCCCeEEEE
Confidence            35999999876433332 2 2456664444 445999999999999999999999998876655444  45443 69999


Q ss_pred             CCccEEEEEcCCCCEEEEEEeC
Q 020545          251 PRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       251 P~G~~h~~~~g~~~~~~~~~~~  272 (325)
                      |+|++|...+-.++++++.+-+
T Consensus        90 ppg~w~~~~~~s~~svlLv~as  111 (131)
T PF05523_consen   90 PPGVWHGIKNFSEDSVLLVLAS  111 (131)
T ss_dssp             -TT-EEEEE---TT-EEEEEES
T ss_pred             CCchhhHhhccCCCcEEEEEcC
Confidence            9999999877666677666543

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.36  E-value=0.0014  Score=50.89  Aligned_cols=65  Identities=20%  Similarity=0.223  Sum_probs=50.1

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF  268 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~  268 (325)
                      |..+..+++.||+.+..|.|+ ..|.+||++|+..    +.++      ++.+||.+..|.|..|...+ ++++.++
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~----d~~~------~~~~G~~~~~p~g~~h~~~s-~~gc~~~   87 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELS----DGDG------RYGAGDWLRLPPGSSHTPRS-DEGCLIL   87 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEE----ETTC------EEETTEEEEE-TTEEEEEEE-SSCEEEE
T ss_pred             cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEE----ECCc------cCCCCeEEEeCCCCccccCc-CCCEEEE
Confidence            568899999999999999996 5677799999876    3332      36799999999999998764 6666544

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.21  E-value=0.0011  Score=49.66  Aligned_cols=56  Identities=14%  Similarity=0.287  Sum_probs=41.0

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEE
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                      +++..-..+||.+.   |+...+|++||++|+++++.-  +|.+   .++++||++++|+|+..
T Consensus         7 ~~~g~w~~~pg~~~---~~~~~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~~~p~G~~~   62 (74)
T PF05899_consen    7 FSAGVWECTPGKFP---WPYPEDEFFYVLEGEVTITDE--DGET---VTFKAGDAFFLPKGWTG   62 (74)
T ss_dssp             EEEEEEEEECEEEE---EEESSEEEEEEEEEEEEEEET--TTEE---EEEETTEEEEE-TTEEE
T ss_pred             EEEEEEEECCceeE---eeCCCCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEEEECCCCEE
Confidence            45666677887653   333559999999999888844  5543   36999999999999973

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.16  E-value=0.0014  Score=54.56  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             cceeeccc--cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            7 VHIIVCLT--ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         7 ~~~~~~p~--h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      ...++--|  |+.++|+..|++|+ ..+.+=.+++      + ...+.+||+++||+|+-|.- +..+-++.++.-+
T Consensus        51 ~g~Vf~yHHYHs~aHEVl~vlrgq-A~l~iGG~~G------~-el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaY  118 (163)
T COG4297          51 RGGVFNYHHYHSGAHEVLGVLRGQ-AGLQIGGADG------Q-ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAY  118 (163)
T ss_pred             cccccccccccCCcceEEEEecce-eEEEecCCCC------c-eeeecCCCEEEEecCccccc-ccCCCCeEEEccc
Confidence            34445445  56799999999999 9998866664      3 46799999999999999954 4444577777655

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=97.14  E-value=0.0032  Score=50.75  Aligned_cols=61  Identities=20%  Similarity=0.364  Sum_probs=39.3

Q ss_pred             CCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC-CCCEEEEE
Q 020545          202 ANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG-PEGIECFS  269 (325)
Q Consensus       202 pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g-~~~~~~~~  269 (325)
                      ++-...||||. -.++.||++|++.+.+ +  + +.+  .+++||++++|+|.+|..... ++++..+.
T Consensus        12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~-~--~-~~~--~l~~g~~~li~p~~~H~~~~~~~~~~~~~~   73 (136)
T PF02311_consen   12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI-D--G-QEY--PLKPGDLFLIPPGQPHSYYPDSNEPWEYYW   73 (136)
T ss_dssp             TT-SEEEETT--SEEEEEEEEE-EEEEE-T--T-EEE--EE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred             CCCccCCEECC-CEEEEEEeCCEEEEEE-C--C-EEE--EEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence            44566899985 8899999999999843 2  2 233  699999999999999986664 34655443

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.08  E-value=0.0036  Score=60.30  Aligned_cols=75  Identities=12%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      .|.+..-.|.||....||=|. +..+-||++|+|..++|+.  + .+  .+++||+|++|.+..|--.| +++.+.|+.+
T Consensus        80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~g--~-~~--~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~  153 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVDG--E-RT--TMHPGDFIITPSWTWHDHGNPGDEPMIWLDG  153 (335)
T ss_pred             hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEECC--E-EE--eeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence            567788889999999999985 7799999999997777754  3 34  59999999999999997555 6777888766


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       154 lD  155 (335)
T TIGR02272       154 LD  155 (335)
T ss_pred             CC
Confidence            54

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=97.05  E-value=0.0036  Score=52.88  Aligned_cols=68  Identities=9%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEee
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGE   82 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~   82 (325)
                      +|-+.-.|+++|++|+ |..-+-.... +-..+-..+.+-+++.|.||.+.+|-+.|++. +++.++.+.+
T Consensus        59 iHRHsCEEVFvVLkG~-GTl~l~~~~~-~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiS  127 (167)
T PF02041_consen   59 IHRHSCEEVFVVLKGS-GTLYLASSHE-KYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIIS  127 (167)
T ss_dssp             EEEESS-EEEEEEE---EEEEE--SSS-SS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEE
T ss_pred             CccccccEEEEEEecc-eEEEEecccc-cCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEec
Confidence            3434568999999999 9999875431 11123446899999999999999999999995 7998887764

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=97.01  E-value=0.019  Score=56.73  Aligned_cols=203  Identities=13%  Similarity=0.080  Sum_probs=108.7

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC-CCCCCCcce
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-RAYVPGEFS   93 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~-~~~~p~~~~   93 (325)
                      +.|.++++++.+|+ +.+..-.        .  ...+++||+++||+|+.+.+. ..+.+.+.+.+-..+ ....|..  
T Consensus       151 NaDGD~Livpq~G~-l~i~TEf--------G--~L~v~pgei~VIPRG~~frv~-l~~gp~rgyi~E~~g~~f~LPdl--  216 (438)
T PRK05341        151 NADGELLIVPQQGR-LRLATEL--------G--VLDVEPGEIAVIPRGVKFRVE-LPDGPARGYVCENYGAPFRLPDL--  216 (438)
T ss_pred             cCCCCEEEEEEeCC-EEEEEec--------c--ceEecCCCEEEEcCccEEEEe-cCCCCeeEEEEEecCCcccCCCC--
Confidence            34789999999999 8877632        1  357999999999999998774 434455554432111 2233432  


Q ss_pred             eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeec
Q 020545           94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFA  163 (325)
Q Consensus        94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~  163 (325)
                        =..|.+.++.       .+-|..+...++..  ..+-..++|...    .+.   .. +|.      +.--+++|||.
T Consensus       217 --GpiG~nglan-------pRDF~~P~a~~ed~--~~~~~vv~K~~G----~l~~~~~~hsPfDVVaWhGn~~Pykydl~  281 (438)
T PRK05341        217 --GPIGANGLAN-------PRDFLTPVAAFEDR--EGPFELVAKFGG----RLWRAEIDHSPLDVVAWHGNYAPYKYDLR  281 (438)
T ss_pred             --CcccccCCCC-------hhHcCCCcchhccc--CCCEEEEEEeCC----eeEEEecCCCCceEeeecCcccceEeehh
Confidence              0122333322       23344443333321  111234455444    221   11 221      12347888887


Q ss_pred             CCCCCe--e--ccCCeEEEEEcC-CCCcccccccceE--EEEEecCCCccCCeecCC-CCEEEEEEeCcEEEEEEeCCCc
Q 020545          164 NFPADF--C--VKKAGMVTSFTG-SNFPFLEQVGLSC--TILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAK  235 (325)
Q Consensus       164 ~~~p~~--~--~~~gG~~~~~~~-~~~p~L~~~gis~--~~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv~p~g~  235 (325)
                      +-.|.-  +  -.+---.+++++ .+-|.....+.-+  =|-...+++++.|-||.| .+|+++.+.|.-...       
T Consensus       282 ~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y~ak-------  354 (438)
T PRK05341        282 RFNTIGSISFDHPDPSIFTVLTSPSDTPGTANIDFVIFPPRWLVAENTFRPPWFHRNVMSEFMGLIHGVYDAK-------  354 (438)
T ss_pred             heeeccccccccCCCCceEEEeccCCCCCccccceEEECCcccCCCCccCCCCCccchhhhhhhhcccccccc-------
Confidence            644431  0  011111222222 2344444333211  112237899999999999 669998888864322       


Q ss_pred             eEEeEEecCccEEEECCccEE
Q 020545          236 LVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       236 ~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                         +..+.+|.+-.=|.|.+|
T Consensus       355 ---~~gf~pGg~SLH~~~~pH  372 (438)
T PRK05341        355 ---AEGFVPGGASLHNCMSPH  372 (438)
T ss_pred             ---ccCcCCCeeeecCCCCCC
Confidence               012678888888888886

>PRK13500 transcriptional activator RhaR; Provisional

Probab=96.98  E-value=0.0019  Score=61.46  Aligned_cols=57  Identities=14%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      -|.+..+.+|+++..|++||++|+ |...+   ++      + ...+++||+++||+|..|.+....+
T Consensus        55 ~~~~~~~~~H~H~~~el~~v~~G~-g~~~v---~~------~-~~~l~~Gdl~~I~~~~~H~~~~~~~  111 (312)
T PRK13500         55 RYPQDVFAEHTHDFCELVIVWRGN-GLHVL---ND------R-PYRITRGDLFYIHADDKHSYASVND  111 (312)
T ss_pred             CCCCCCCCccccceEEEEEEEcCe-EEEEE---CC------E-EEeecCCeEEEECCCCeecccccCC
Confidence            455566778888999999999999 99777   53      3 5899999999999999999876554

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=96.97  E-value=0.0029  Score=57.27  Aligned_cols=71  Identities=8%  Similarity=0.086  Sum_probs=58.4

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC-CCCEEEEEEe
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG-PEGIECFSIT  271 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g-~~~~~~~~~~  271 (325)
                      ..+..+++.||+-+..|.| ...|+.+|++|.-    .+..+      .+.+||++..|.|..|.-.+. ++++.++++.
T Consensus       127 ~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f----~de~g------~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~  195 (215)
T TIGR02451       127 ARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAF----SDETG------VYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL  195 (215)
T ss_pred             cEEEEEEECCCCccCCCcC-CCcEEEEEEEEEE----EcCCC------ccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence            4688999999999999999 5779999999993    24332      478999999999999987774 5679999887


Q ss_pred             CCC
Q 020545          272 TST  274 (325)
Q Consensus       272 ~s~  274 (325)
                      +..
T Consensus       196 dap  198 (215)
T TIGR02451       196 DAP  198 (215)
T ss_pred             cCC
Confidence            543

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=96.94  E-value=0.016  Score=49.11  Aligned_cols=123  Identities=14%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             CceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc
Q 020545          156 NLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK  235 (325)
Q Consensus       156 ~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~  235 (325)
                      .+.+.|+...+-+-+...|=+-..+...-.-.++.  +.+-+-++.||.-..+|=|. ..|+.+|++|+|...+....++
T Consensus         9 ~~~Vr~iselpq~~ygr~GLsH~TvAGa~~hGmke--vEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~   85 (167)
T PF02041_consen    9 LPLVRNISELPQDNYGRPGLSHITVAGALLHGMKE--VEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEK   85 (167)
T ss_dssp             --SEEEGGGS--B-TT-TTEEEEEEE-HHHH--SS--EEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSS
T ss_pred             CceeEEhhhCccccccCCCcceEEeehhhhcCcee--eeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEeccccc
Confidence            35677887765554433331223333333345664  58899999999999999996 7799999999999999876421


Q ss_pred             ---eEEeEEecCccEEEECCccEEEEEcCC--CCEEEEEEeCCCCCceeeec
Q 020545          236 ---LVLDSEVEAGQLLVVPRCFVVAIIAGP--EGIECFSITTSTRPALGKLG  282 (325)
Q Consensus       236 ---~~~~~~l~~Gdv~vvP~G~~h~~~~g~--~~~~~~~~~~s~~p~~~~la  282 (325)
                         ..-...+-+++.|.||.+.+|-..|++  +++..+.+.+ .-|...|+.
T Consensus        86 ~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiS-rpPvkvf~y  136 (167)
T PF02041_consen   86 YPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIIS-RPPVKVFIY  136 (167)
T ss_dssp             S--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEE-SSS--EEEE
T ss_pred             CCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEec-CCCeEEEEe
Confidence               223346889999999999999876754  6788777653 345555554

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=96.85  E-value=0.0029  Score=47.45  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWY   68 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~   68 (325)
                      ..+|++||++|+ ..+..  .+      .+ ..++++||++++|+|..--|.
T Consensus        24 ~~~E~~~vleG~-v~it~--~~------G~-~~~~~aGD~~~~p~G~~~~w~   65 (74)
T PF05899_consen   24 PEDEFFYVLEGE-VTITD--ED------GE-TVTFKAGDAFFLPKGWTGTWE   65 (74)
T ss_dssp             SSEEEEEEEEEE-EEEEE--TT------TE-EEEEETTEEEEE-TTEEEEEE
T ss_pred             CCCEEEEEEEeE-EEEEE--CC------CC-EEEEcCCcEEEECCCCEEEEE
Confidence            449999999999 66664  34      24 489999999999999976553

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=96.77  E-value=0.0032  Score=59.03  Aligned_cols=51  Identities=16%  Similarity=0.175  Sum_probs=43.6

Q ss_pred             eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545           11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus        11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      +.||+++--|+.||++|+ |.+.+   ++      + .+.+.+||+++||+|.+|++...++
T Consensus        31 ~~~H~H~~~ei~~i~~G~-~~~~i---~~------~-~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         31 FVEHTHQFCEIVIVWRGN-GLHVL---ND------H-PYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             CccccccceeEEEEecCc-eEEEE---CC------e-eeeecCCeEEEEcCCCcccccccCC
Confidence            457888899999999999 99887   53      3 5899999999999999999876544

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.76  E-value=0.0057  Score=60.42  Aligned_cols=198  Identities=15%  Similarity=0.129  Sum_probs=78.0

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC-CCCCCCcce
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-RAYVPGEFS   93 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~-~~~~p~~~~   93 (325)
                      +.|.++++++.+|+ +.+.-   +.     .  ...+++||+++||+|+.+.+.=.  ++++.+.+-..+ ....|.   
T Consensus       143 NaDGD~Li~~q~G~-l~l~T---e~-----G--~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E~~~~~~~lPe---  206 (424)
T PF04209_consen  143 NADGDELIFPQQGS-LRLET---EF-----G--RLDVRPGDYVVIPRGTRFRVELP--GPARGYIIENFGSHFRLPE---  206 (424)
T ss_dssp             ESSEEEEEEEEES--EEEEE---TT-----E--EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEEEES--EE------
T ss_pred             cCCCCEEEEEEECC-EEEEe---cC-----e--eEEEcCCeEEEECCeeEEEEEeC--CCceEEEEEcCCCeEEecC---
Confidence            55789999999999 88877   32     2  35799999999999999887555  566665543221 112231   


Q ss_pred             eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeec
Q 020545           94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFA  163 (325)
Q Consensus        94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~  163 (325)
                       +=..|.++++.       .+-|..+....+.-  ..+-.+++|...    .+.   .. +|.      +.--+++|||.
T Consensus       207 -~G~iG~ngla~-------~RDf~~P~a~~~d~--~~~~~v~~K~~G----~l~~~~~~hsPfDVVgW~Gn~~Pykynl~  272 (424)
T PF04209_consen  207 -LGPIGANGLAN-------PRDFRTPVAAFEDD--EGEWEVVVKFRG----GLFSATYPHSPFDVVGWHGNYYPYKYNLR  272 (424)
T ss_dssp             --GGGTTS-BS--------GGGEEEE---------EEEEEEEEEETT----EEEEEEEEE-S--EEEEEES---EEEEGG
T ss_pred             -cCccccCCCCC-------hhhhcCCCcccccC--CCCEEEEEEECC----eeEEEEeCCCchheeeecCccccEEEehH
Confidence             11123333321       33344444222211  111234555444    221   11 231      12347899998


Q ss_pred             CCCCCeeccCCeEEE-EEcCCCCccc----ccccceEE-EE------EecCCCccCCeecCC-CCEEEEEEeCcEEEEEE
Q 020545          164 NFPADFCVKKAGMVT-SFTGSNFPFL----EQVGLSCT-IL------KLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIV  230 (325)
Q Consensus       164 ~~~p~~~~~~gG~~~-~~~~~~~p~L----~~~gis~~-~v------~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv  230 (325)
                      +-.|..+.     .. ..++.-+-.|    ..-|.++. .+      ....+.++.|-||.| .+|.++.+.|.-.+.  
T Consensus       273 ~F~pi~s~-----~~dH~dPsi~tvlT~ps~~~g~~v~dFviF~PRw~v~e~tfrpPyyHrNv~sE~mg~i~G~y~a~--  345 (424)
T PF04209_consen  273 DFEPINSV-----SYDHPDPSIHTVLTAPSEAPGFAVCDFVIFPPRWLVAEHTFRPPYYHRNVMSEFMGLIRGNYDAS--  345 (424)
T ss_dssp             G-B----S-----SSS---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE--TTS--S---B--SSEEEEEEEE--------
T ss_pred             Hhhhhcce-----ecccCCCceeEEEeccCCCCCceEEEEEeeCCcccccCCCccCCCCCcceeeeeeeeeccccccc--
Confidence            75554221     10 1222222122    22232322 22      234478999999999 567666667654322  


Q ss_pred             eCCCceEEeEEecCccEEEECCccEEE
Q 020545          231 GLNAKLVLDSEVEAGQLLVVPRCFVVA  257 (325)
Q Consensus       231 ~p~g~~~~~~~l~~Gdv~vvP~G~~h~  257 (325)
                              ...+.+|.+-.=|.|++|=
T Consensus       346 --------~~gf~pGg~SLH~~~~pHG  364 (424)
T PF04209_consen  346 --------RDGFEPGGISLHPCGTPHG  364 (424)
T ss_dssp             -------------TT-EEEE-TT--B-
T ss_pred             --------cCCcCCCceeccCCCCCCC
Confidence                    1237789999999999985

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=96.73  E-value=0.0092  Score=49.08  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=56.4

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +|+.+-.--|+.+.=|-+||++|+ |.+..+..+       + ++.+++|.++++-+--.|++....  +++++|+|.
T Consensus        42 i~aGtet~~~YknHlEAvyci~G~-Gev~~~~~G-------~-~~~i~pGt~YaLd~hD~H~lra~~--dm~~vCVFn  108 (126)
T PF06339_consen   42 IYAGTETHIHYKNHLEAVYCIEGE-GEVEDLDTG-------E-VHPIKPGTMYALDKHDRHYLRAKT--DMRLVCVFN  108 (126)
T ss_pred             EeCCCeeEEEecCceEEEEEEece-EEEEEccCC-------c-EEEcCCCeEEecCCCccEEEEecC--CEEEEEEcC
Confidence            455555566777888999999999 999998644       3 689999999999999999998764  899999993

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=96.72  E-value=0.025  Score=55.79  Aligned_cols=202  Identities=11%  Similarity=0.022  Sum_probs=105.8

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC-CCCCCCcce
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-RAYVPGEFS   93 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~-~~~~p~~~~   93 (325)
                      ..|.++++++.+|+ +.+..-.        .  ...+++||+++||+|+.+.+.=.+  +.+.+.+-..+ ....|..  
T Consensus       145 NaDGD~Livpq~G~-l~i~TEf--------G--~L~v~pgei~VIPRG~~frv~l~g--p~rgyi~E~~g~~f~LPdl--  209 (429)
T TIGR01015       145 NADGDFLIVPQQGA-LLITTEF--------G--RLLVEPNEICVIPRGVRFRVTVLE--PARGYICEVYGAHFQLPDL--  209 (429)
T ss_pred             ccCCCEEEEEEeCc-EEEEEec--------c--ceEecCCCEEEecCccEEEEeeCC--CceEEEEeccCCcccCCCC--
Confidence            34789999999999 8777632        1  357999999999999998775554  44444332111 1223421  


Q ss_pred             eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeec
Q 020545           94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFA  163 (325)
Q Consensus        94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~  163 (325)
                        =..|.+.++.       .+-|..+...++......+-..++|...    .+.   .. +|.      +.--+++|||.
T Consensus       210 --GpiG~nglan-------~RDF~~P~a~fed~~~~~~~~vv~K~~G----~l~~~~~~hsPfDVVaWhGn~~Pykydl~  276 (429)
T TIGR01015       210 --GPIGANGLAN-------PRDFEAPVAAFEDREVPGPYTVINKFQG----SLFAAKQDHSPFDVVAWHGNYVPYKYDLK  276 (429)
T ss_pred             --CcccccCCCC-------HHHcCCCccchhccccCCCeEEEEEeCC----eeEEEecCCCCcceeeecCcccceEeehh
Confidence              0122233322       2344444333333111111234555444    221   11 221      22457889987


Q ss_pred             CCCCCee----ccCCeEEEEEcCC-CCcccccccceEE----EEEecCCCccCCeecCC-CCEEEEEEeCcEEEEEEeCC
Q 020545          164 NFPADFC----VKKAGMVTSFTGS-NFPFLEQVGLSCT----ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLN  233 (325)
Q Consensus       164 ~~~p~~~----~~~gG~~~~~~~~-~~p~L~~~gis~~----~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv~p~  233 (325)
                      +-.|.-+    -.+---.+++++. +.|...-  ....    |-...+++++.|-||.| .+|+++.+.|.-..-     
T Consensus       277 ~F~pi~svs~dH~dPSI~tvltaps~~pg~av--~dFviFpPRw~vae~TfrpPyyHrN~~sEfmgli~G~y~ak-----  349 (429)
T TIGR01015       277 RFNVINSVSFDHPDPSIFTVLTAPSDRPGTAI--ADFVIFPPRWLVAEKTFRPPYYHRNCMSEFMGLITGAYDAK-----  349 (429)
T ss_pred             heeeccccccccCCCCceEEEeccCCCCCceE--EEEEeeCCcccCCCCccCCCCCccchhhhhhhhcccccccc-----
Confidence            6554411    0111112222221 2222221  1111    22245899999999998 669888888753211     


Q ss_pred             CceEEeEEecCccEEEECCccEE
Q 020545          234 AKLVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       234 g~~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                           +..+.+|.+-.=|.+.+|
T Consensus       350 -----~~gf~pGg~SlH~~~~pH  367 (429)
T TIGR01015       350 -----EGGFVPGGGSLHNMMTPH  367 (429)
T ss_pred             -----cCCcCCCeeeecCCCCCC
Confidence                 012668888888888876

Missing in human disease alkaptonuria.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=96.69  E-value=0.0046  Score=57.12  Aligned_cols=72  Identities=17%  Similarity=0.058  Sum_probs=45.5

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      |-+..++.+.+|=...|||| ++++-+||++|....+     +.+.-..-|.+|.-+..|+|..|+..+ +++.+.|+.
T Consensus        35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~-----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e  107 (251)
T PF14499_consen   35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG-----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE  107 (251)
T ss_dssp             S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET-----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred             CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC-----CCcccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence            67889999999999999999 5899999999975553     333333469999999999999998766 344466653

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=96.68  E-value=0.0082  Score=55.75  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=40.6

Q ss_pred             CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545          203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII  259 (325)
Q Consensus       203 g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~  259 (325)
                      +....|||| +..|+.||++|++.+.+   +| +.+  .+.+||+++||+|..|...
T Consensus        33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~-~~~--~l~~g~l~~i~p~~~H~~~   82 (278)
T PRK10296         33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NG-KRV--LLERGDFVFIPLGSHHQSF   82 (278)
T ss_pred             hcCCCCccc-ccEEEEEEEeceEEEEE---CC-EEE--EECCCcEEEeCCCCcccee
Confidence            345689999 68899999999998776   33 334  6999999999999999643

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=96.63  E-value=0.0099  Score=50.36  Aligned_cols=49  Identities=8%  Similarity=0.026  Sum_probs=35.7

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      .++|++|-++|. ..+.+++.+      +.+.-.+++||+|.+|++++|.=+-..+
T Consensus        52 e~eE~FyQ~kG~-m~Lkv~e~g------~~kdi~I~EGe~fLLP~~vpHsP~R~~~  100 (151)
T PF06052_consen   52 ETEEFFYQLKGD-MCLKVVEDG------KFKDIPIREGEMFLLPANVPHSPQRPAD  100 (151)
T ss_dssp             SS-EEEEEEES--EEEEEEETT------EEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred             CcceEEEEEeCc-EEEEEEeCC------ceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence            478999999999 999999876      4557899999999999999998776543

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=96.55  E-value=0.0064  Score=56.57  Aligned_cols=57  Identities=9%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      .|++--.-+|+++.-++.||++|+ |.+.+   ++      + ...+++||+++||+|.+|.+...++
T Consensus        25 ~~~~~~~~~H~h~~~~l~~v~~G~-~~~~i---~~------~-~~~l~~g~l~li~~~~~H~~~~~~~   81 (282)
T PRK13502         25 RYPQDVFAEHTHEFCELVMVWRGN-GLHVL---NE------R-PYRITRGDLFYIRAEDKHSYTSVND   81 (282)
T ss_pred             CCCCCCCCccccceEEEEEEecCc-EEEEE---CC------E-EEeecCCcEEEECCCCcccccccCC
Confidence            355555667877888999999999 99887   52      3 5889999999999999998865443

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=96.53  E-value=0.0091  Score=55.47  Aligned_cols=49  Identities=20%  Similarity=0.330  Sum_probs=41.2

Q ss_pred             eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec
Q 020545           11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN   70 (325)
Q Consensus        11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~   70 (325)
                      .-||+++..|+.||++|+ +.+.+   ++      + ...+.+||+++||+|..|.....
T Consensus        36 ~~~H~H~~~ei~~v~~G~-~~~~i---~~------~-~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         36 SGLHQHDYYEFTLVLTGR-YYQEI---NG------K-RVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             CCCcccccEEEEEEEece-EEEEE---CC------E-EEEECCCcEEEeCCCCccceeee
Confidence            357888999999999999 98777   53      3 47999999999999999966544

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=96.53  E-value=0.0098  Score=56.40  Aligned_cols=59  Identities=15%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      .+...-.+..|..+||| +--|+.|+++|++.+.+   +| +.+  .+.+||+++|+.|.+|....
T Consensus        28 ~~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g-~~~--~l~~Gd~ili~s~~~H~~~~   86 (302)
T PRK10371         28 LEIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NN-EKV--QINQGHITLFWACTPHQLTD   86 (302)
T ss_pred             eEEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CC-EEE--EEcCCcEEEEecCCcccccc
Confidence            34455667789999999 57799999999987654   23 333  59999999999999997543

>PLN02658 homogentisate 1,2-dioxygenase

Probab=96.51  E-value=0.066  Score=52.98  Aligned_cols=204  Identities=12%  Similarity=0.054  Sum_probs=105.5

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec-CCCCCCCcce
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET-SRAYVPGEFS   93 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~-~~~~~p~~~~   93 (325)
                      +.|.++++++.+|+ +.+..-.        .  ...+++||+++||+|+.+.+ +..+.+.+.+.+-.. +....|..  
T Consensus       144 NaDGD~Livpq~G~-l~i~TEf--------G--~L~v~pgei~VIPRG~~frv-~l~~gp~rgyv~E~~g~~f~LPdl--  209 (435)
T PLN02658        144 NADGDFLIVPQQGR-LWIKTEL--------G--KLQVSPGEIVVIPRGFRFAV-DLPDGPSRGYVLEIFGGHFQLPDL--  209 (435)
T ss_pred             cCCCCEEEEEEeCC-EEEEEec--------c--ceEecCCCEEEecCccEEEE-ecCCCCeeEEEEeecCCcccCCCC--
Confidence            45789999999999 8777632        1  25799999999999999766 433345555443211 12233431  


Q ss_pred             eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeec
Q 020545           94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFA  163 (325)
Q Consensus        94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~  163 (325)
                        =..|.+.++.       .+-|..+....+.... .+-..++|...    .+.   .. +|.      +.--+++|||.
T Consensus       210 --GpiG~nglan-------pRDF~~P~a~~ed~~~-~~~~vv~K~~g----~l~~~~~~hsPfDVVaWhGn~~Pykydl~  275 (435)
T PLN02658        210 --GPIGANGLAN-------PRDFLHPVAWFEDGSR-PGYTIVQKFGG----ELFTAKQDFSPFNVVAWHGNYVPYKYDLS  275 (435)
T ss_pred             --CcccccCCCC-------HhHccCCccccccccC-CcEEEEEEeCC----eeEEEecCCCCceEeeecCcccceEechH
Confidence              0122223322       2334444322222111 11134555444    221   01 221      22347888887


Q ss_pred             CCCCCee----ccCCeEEEEEcC-CCCcccccccceE--EEEEecCCCccCCeecCC-CCEEEEEEeCcEEEEEEeCCCc
Q 020545          164 NFPADFC----VKKAGMVTSFTG-SNFPFLEQVGLSC--TILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAK  235 (325)
Q Consensus       164 ~~~p~~~----~~~gG~~~~~~~-~~~p~L~~~gis~--~~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv~p~g~  235 (325)
                      +-.|.-+    -.+---.+++++ .+-|.....+.-+  -|-....++++.|-||.| .+|+++.+.|.-..     .  
T Consensus       276 ~F~pi~svs~dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~vae~TfrpPyyHrN~~sEfmgli~G~y~a-----k--  348 (435)
T PLN02658        276 KFCPVNTVLFDHADPSINTVLTAPTDKPGVALADFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGSYEA-----K--  348 (435)
T ss_pred             HceeccccccccCCCCceEEEeccCCCCCccccceEEECCccccccCccCCCCCccchhhhhhhhccccccc-----c--
Confidence            6444310    011111222222 2344443333211  111222389999999999 66998888886211     0  


Q ss_pred             eEEeEEecCccEEEECCccEE
Q 020545          236 LVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       236 ~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                         +..+.+|.+-.=|.+.+|
T Consensus       349 ---~~gf~pGg~SLH~~~~pH  366 (435)
T PLN02658        349 ---ADGFLPGGASLHSCMTPH  366 (435)
T ss_pred             ---cCCccCCeeeecCCCCCC
Confidence               012678888888888886

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.48  E-value=0.0042  Score=53.27  Aligned_cols=66  Identities=18%  Similarity=0.119  Sum_probs=49.0

Q ss_pred             eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEE-EeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVL-GLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~-~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      +|+-+|-+.-.||.||+.|. |+.-+-+.+.      +.++ -+++||++++|+|.-|-+-=+.+.-.+++-+|
T Consensus        84 ~FfEEhlh~deeiR~il~Gt-gYfDVrd~dd------~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF  150 (179)
T KOG2107|consen   84 SFFEEHLHEDEEIRYILEGT-GYFDVRDKDD------QWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLF  150 (179)
T ss_pred             HHHHHhcCchhheEEEeecc-eEEeeccCCC------CEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHh
Confidence            46677866779999999999 9998876653      4444 79999999999999998755544333333333

>PRK13500 transcriptional activator RhaR; Provisional

Probab=96.46  E-value=0.013  Score=55.75  Aligned_cols=54  Identities=9%  Similarity=0.076  Sum_probs=41.7

Q ss_pred             CCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545          202 ANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       202 pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      |.....+|||. ..|++||.+|+|...+=+    +.  ..+++||+++||+|..|.....+
T Consensus        57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~~----~~--~~l~~Gdl~~I~~~~~H~~~~~~  110 (312)
T PRK13500         57 PQDVFAEHTHD-FCELVIVWRGNGLHVLND----RP--YRITRGDLFYIHADDKHSYASVN  110 (312)
T ss_pred             CCCCCCccccc-eEEEEEEEcCeEEEEECC----EE--EeecCCeEEEECCCCeecccccC
Confidence            33446899984 899999999999965432    22  35999999999999999865433

>PRK13501 transcriptional activator RhaR; Provisional

Probab=96.42  E-value=0.014  Score=54.68  Aligned_cols=49  Identities=10%  Similarity=0.156  Sum_probs=40.3

Q ss_pred             ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      -..|||| +-.|+.||.+|++.+.|   +| +.+  .+.+||+++||.|.+|....
T Consensus        30 ~~~~H~H-~~~ei~~i~~G~~~~~i---~~-~~~--~l~~g~~~~I~p~~~H~~~~   78 (290)
T PRK13501         30 TFVEHTH-QFCEIVIVWRGNGLHVL---ND-HPY--RITCGDVFYIQAADHHSYES   78 (290)
T ss_pred             CCccccc-cceeEEEEecCceEEEE---CC-eee--eecCCeEEEEcCCCcccccc
Confidence            4569999 68899999999999886   33 233  59999999999999998543

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=96.40  E-value=0.12  Score=51.08  Aligned_cols=45  Identities=13%  Similarity=0.257  Sum_probs=34.2

Q ss_pred             CCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545          212 ADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       212 ~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      .....|+.|++|++++.  . ++. .+  .|++|++++||++...+...|+
T Consensus       337 ~~~~~Illv~~G~~~i~--~-~~~-~~--~l~~G~~~fipa~~~~~~~~g~  381 (389)
T PRK15131        337 QQSAAILFCVEGEAVLW--K-GEQ-QL--TLKPGESAFIAANESPVTVSGH  381 (389)
T ss_pred             CCCcEEEEEEcceEEEE--e-CCe-EE--EECCCCEEEEeCCCccEEEecc
Confidence            35679999999999874  2 332 23  5999999999999887665554

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=96.39  E-value=0.012  Score=50.31  Aligned_cols=58  Identities=16%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAI  258 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~  258 (325)
                      .|++...+|+...   ..|..+-+|+-||++|+..+.  +. |+ .+  .-++|||++||+|.-...
T Consensus        76 ~l~~Gf~~le~~~---f~wtl~YDEi~~VlEG~L~i~--~~-G~-~~--~A~~GDvi~iPkGs~I~f  133 (152)
T PF06249_consen   76 RLSAGFMELEKTS---FPWTLTYDEIKYVLEGTLEIS--ID-GQ-TV--TAKPGDVIFIPKGSTITF  133 (152)
T ss_dssp             SSEEEEEEEEEEE---EEEE-SSEEEEEEEEEEEEEE--ET-TE-EE--EEETT-EEEE-TT-EEEE
T ss_pred             ceeeEEEEEeCCC---ccEEeecceEEEEEEeEEEEE--EC-CE-EE--EEcCCcEEEECCCCEEEE
Confidence            4688889999853   479999999999999976655  43 54 44  377999999999997554

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=96.36  E-value=0.0098  Score=50.40  Aligned_cols=46  Identities=20%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             ecCC-CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEE
Q 020545          210 YTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVA  257 (325)
Q Consensus       210 ~h~~-A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~  257 (325)
                      ||-| +.|+.|-++|...+-+++.+..+  +-.+++||+|.+|++.+|.
T Consensus        48 yHine~eE~FyQ~kG~m~Lkv~e~g~~k--di~I~EGe~fLLP~~vpHs   94 (151)
T PF06052_consen   48 YHINETEEFFYQLKGDMCLKVVEDGKFK--DIPIREGEMFLLPANVPHS   94 (151)
T ss_dssp             EEE-SS-EEEEEEES-EEEEEEETTEEE--EEEE-TTEEEEE-TT--EE
T ss_pred             cccCCcceEEEEEeCcEEEEEEeCCceE--EEEeCCCcEEecCCCCCCC
Confidence            5555 78999999999999999975433  4579999999999999998

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=96.27  E-value=0.014  Score=54.23  Aligned_cols=54  Identities=13%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      .-+....||||.+--++.|+.+|++.+.+   ++ +.+  .+++||++++|+|.+|....
T Consensus        31 ~~~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~-~~~--~l~~g~~~ii~~~~~H~~~~   84 (287)
T TIGR02297        31 FFGRNMPVHFHDRYYQLHYLTEGSIALQL---DE-HEY--SEYAPCFFLTPPSVPHGFVT   84 (287)
T ss_pred             ccCCCCCCcccccceeEEEEeeCceEEEE---CC-EEE--EecCCeEEEeCCCCcccccc
Confidence            34456899999767899999999997665   22 233  69999999999999998654

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.25  E-value=0.017  Score=47.19  Aligned_cols=60  Identities=18%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE-EEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV-VAII  259 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~-h~~~  259 (325)
                      .+.+..=.-.||-.   +|+-...|.+|+++|++.++   +++....  ++++||++++|+|+. -|..
T Consensus        44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T---~d~Ge~v--~~~aGD~~~~~~G~~g~W~V  104 (116)
T COG3450          44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVT---PDGGEPV--EVRAGDSFVFPAGFKGTWEV  104 (116)
T ss_pred             CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEE---CCCCeEE--EEcCCCEEEECCCCeEEEEE
Confidence            34555666777766   45566799999999988766   3333444  599999999999997 5654

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.23  E-value=0.0061  Score=52.28  Aligned_cols=56  Identities=18%  Similarity=0.361  Sum_probs=46.6

Q ss_pred             CccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545          204 AMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG  261 (325)
Q Consensus       204 ~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g  261 (325)
                      .+.++|-|.+. ||-||+.|.|..-|-+-+++ =++--++.||++++|+|.-|-.-..
T Consensus        84 ~FfEEhlh~de-eiR~il~GtgYfDVrd~dd~-WIRi~vekGDlivlPaGiyHRFTtt  139 (179)
T KOG2107|consen   84 SFFEEHLHEDE-EIRYILEGTGYFDVRDKDDQ-WIRIFVEKGDLIVLPAGIYHRFTTT  139 (179)
T ss_pred             HHHHHhcCchh-heEEEeecceEEeeccCCCC-EEEEEEecCCEEEecCcceeeeecC
Confidence            47899999765 99999999999999998864 3444589999999999999976443

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.21  E-value=0.009  Score=48.79  Aligned_cols=42  Identities=24%  Similarity=0.322  Sum_probs=32.7

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWY   68 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~   68 (325)
                      +.+|.+|+++|+ +.++   +++     .+ ...+++||++++|+|..--|.
T Consensus        62 ~~~E~chil~G~-v~~T---~d~-----Ge-~v~~~aGD~~~~~~G~~g~W~  103 (116)
T COG3450          62 DEDEFCHILEGR-VEVT---PDG-----GE-PVEVRAGDSFVFPAGFKGTWE  103 (116)
T ss_pred             ccceEEEEEeeE-EEEE---CCC-----Ce-EEEEcCCCEEEECCCCeEEEE
Confidence            458999999999 5443   353     34 578999999999999976553

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=96.19  E-value=0.082  Score=46.43  Aligned_cols=71  Identities=14%  Similarity=0.136  Sum_probs=53.3

Q ss_pred             cCCCccCCeecCC--CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          201 DANAMLSPTYTAD--SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       201 ~pg~~~~Ph~h~~--A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+|.++..|+|..  -.++++|++|+...-+||..-.     +.....|.+  +..++||.|++|-..+-.+++.++-..
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~  131 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC  131 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence            6799999999843  6899999999999999996421     233346665  679999999999877744545544433

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=96.15  E-value=0.17  Score=48.17  Aligned_cols=61  Identities=18%  Similarity=0.283  Sum_probs=40.3

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      .++.++++... ..  ....+...+++|++|++++..   ++. .  ..|++|+.++||++...+...|+
T Consensus       235 F~~~~~~~~~~-~~--~~~~~~~~il~v~~G~~~i~~---~~~-~--~~l~~G~~~~ipa~~~~~~i~g~  295 (302)
T TIGR00218       235 FSVYKWDISGK-AE--FIQQQSALILSVLEGSGRIKS---GGK-T--LPLKKGESFFIPAHLGPFTIEGE  295 (302)
T ss_pred             eEEEEEEeCCc-ee--eccCCCcEEEEEEcceEEEEE---CCE-E--EEEecccEEEEccCCccEEEEee
Confidence            34555555433 11  112457789999999998852   232 2  35999999999999976655553

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=96.14  E-value=0.016  Score=49.62  Aligned_cols=58  Identities=16%  Similarity=0.155  Sum_probs=38.6

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .+...+-+|+-||++|+ -.+..   ++      + ....++|||++||+|+..-+--.  ...+++.+..
T Consensus        89 f~wtl~YDEi~~VlEG~-L~i~~---~G------~-~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~y  146 (152)
T PF06249_consen   89 FPWTLTYDEIKYVLEGT-LEISI---DG------Q-TVTAKPGDVIFIPKGSTITFSTP--DYARFFYVTY  146 (152)
T ss_dssp             EEEE-SSEEEEEEEEEE-EEEEE---TT------E-EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEEE
T ss_pred             ccEEeecceEEEEEEeE-EEEEE---CC------E-EEEEcCCcEEEECCCCEEEEecC--CCEEEEEEEC
Confidence            35566789999999999 65553   33      3 47899999999999998766332  3466666553

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=96.14  E-value=0.015  Score=54.09  Aligned_cols=58  Identities=5%  Similarity=-0.038  Sum_probs=45.1

Q ss_pred             eeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545           10 IVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIV   78 (325)
Q Consensus        10 ~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~   78 (325)
                      -+.||+++ --++.||++|+ +.+.+   ++     +  ...+++||++++|+|.+|-+...++.+..++
T Consensus        35 ~~~~H~H~~~~~l~~~~~G~-~~~~~---~~-----~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i   93 (287)
T TIGR02297        35 NMPVHFHDRYYQLHYLTEGS-IALQL---DE-----H--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL   93 (287)
T ss_pred             CCCCcccccceeEEEEeeCc-eEEEE---CC-----E--EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence            46778776 58999999999 88777   43     2  5789999999999999999876655443333

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PRK13503 transcriptional activator RhaS; Provisional

Probab=96.08  E-value=0.0086  Score=55.39  Aligned_cols=55  Identities=18%  Similarity=0.151  Sum_probs=44.7

Q ss_pred             ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545            6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG   71 (325)
Q Consensus         6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g   71 (325)
                      |.+.-+-+|+++..|+.||++|. |.+.+   ++     +  ...+++||+++||+|..|.+.+..
T Consensus        23 ~~~~~~~~H~H~~~ei~~v~~G~-~~~~i---~~-----~--~~~l~~g~~~~i~~~~~h~~~~~~   77 (278)
T PRK13503         23 LPQAAFPEHHHDFHEIVIVEHGT-GIHVF---NG-----Q--PYTLSGGTVCFVRDHDRHLYEHTD   77 (278)
T ss_pred             CccccccccccCceeEEEEecCc-eeeEe---cC-----C--cccccCCcEEEECCCccchhhhcc
Confidence            34445567888999999999999 98887   43     2  478999999999999999877654

>PRK13502 transcriptional activator RhaR; Provisional

Probab=95.98  E-value=0.036  Score=51.51  Aligned_cols=56  Identities=9%  Similarity=0.078  Sum_probs=43.4

Q ss_pred             ecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545          200 LDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       200 l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      ..|+-...+||| +..++.||.+|++++.+=   + +.+  .+++||+++||+|.+|.....+
T Consensus        25 ~~~~~~~~~H~h-~~~~l~~v~~G~~~~~i~---~-~~~--~l~~g~l~li~~~~~H~~~~~~   80 (282)
T PRK13502         25 RYPQDVFAEHTH-EFCELVMVWRGNGLHVLN---E-RPY--RITRGDLFYIRAEDKHSYTSVN   80 (282)
T ss_pred             CCCCCCCCcccc-ceEEEEEEecCcEEEEEC---C-EEE--eecCCcEEEECCCCcccccccC
Confidence            344445789998 589999999999998862   2 233  5999999999999999865433

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=95.88  E-value=0.065  Score=47.06  Aligned_cols=72  Identities=14%  Similarity=0.140  Sum_probs=52.6

Q ss_pred             cCCCccCCeecCCC---CEEEEEEeCcEEEEEEeCCC-----ceEEeEEecCcc--EEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTADS---VQVFYVVKGSGKAQIVGLNA-----KLVLDSEVEAGQ--LLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A---~ei~yV~~G~~~~~vv~p~g-----~~~~~~~l~~Gd--v~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++..|+|..-   .+++.|++|+...-++|-.-     .+.....|.+++  .++||+|++|-..+-.++..++-.
T Consensus        51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~  130 (176)
T PF00908_consen   51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK  130 (176)
T ss_dssp             ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred             cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence            34999999999886   79999999999999999531     134455676665  899999999988776655554443


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       131 ~t  132 (176)
T PF00908_consen  131 VT  132 (176)
T ss_dssp             ES
T ss_pred             cC
Confidence            33

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=95.87  E-value=0.043  Score=46.61  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=44.9

Q ss_pred             ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      |++ -..|...+-+|+-||++|+ .-+-+   ++     +  .-.-++|||++||.|.-.-+--.|.  ++++.+.
T Consensus       107 ~~~-~tf~wtl~yDe~d~VlEGr-L~V~~---~g-----~--tv~a~aGDvifiPKgssIefst~ge--a~flyvt  168 (176)
T COG4766         107 MKN-TTFPWTLNYDEIDYVLEGR-LHVRI---DG-----R--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT  168 (176)
T ss_pred             ecc-ccCcceecccceeEEEeee-EEEEE---cC-----C--eEecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence            455 4568888999999999999 55544   32     3  3468999999999999876643333  6666654

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=95.86  E-value=0.021  Score=54.14  Aligned_cols=55  Identities=9%  Similarity=0.033  Sum_probs=43.6

Q ss_pred             eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCC
Q 020545            9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSD   74 (325)
Q Consensus         9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~   74 (325)
                      ...-+||++.-|+.|+++|+ +.+.+   ++      + ...+++||+++|++|.+|-+...++..
T Consensus        37 ~m~~~HwH~e~Ei~yv~~G~-~~~~i---~g------~-~~~l~~Gd~ili~s~~~H~~~~~~~~~   91 (302)
T PRK10371         37 IMPTSHWHGQVEVNVPFDGD-VEYLI---NN------E-KVQINQGHITLFWACTPHQLTDPGNCR   91 (302)
T ss_pred             CCCCCCccccEEEEEecCCc-EEEEE---CC------E-EEEEcCCcEEEEecCCcccccccCCCc
Confidence            33556888999999999999 87666   43      2 578999999999999999776554433

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.83  E-value=0.021  Score=53.72  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=58.5

Q ss_pred             EEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEeC
Q 020545          196 TILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITT  272 (325)
Q Consensus       196 ~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~  272 (325)
                      +.--|-||-....|=|. -+.+-||++|+|-.++|+.  +++   .+++||++..|++..|---+ |++++.|+--++
T Consensus        95 glQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~VdG--er~---~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLD  166 (351)
T COG3435          95 GLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVDG--ERT---PMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLD  166 (351)
T ss_pred             hhheecCcccCCccccc-ccceEEEEeccceeEeecC--cee---eccCCCEEEccCceeccCCCCCCCceEEEcccc
Confidence            34458899999999985 5589999999999999984  454   48999999999999997544 889999986554

>PRK13503 transcriptional activator RhaS; Provisional

Probab=95.64  E-value=0.033  Score=51.46  Aligned_cols=54  Identities=15%  Similarity=0.062  Sum_probs=42.4

Q ss_pred             cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545          201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG  261 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g  261 (325)
                      .+.....+||| +..||.||.+|.+...+=+.    .  ..+++||+++||+|-.|.....
T Consensus        23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~----~--~~l~~g~~~~i~~~~~h~~~~~   76 (278)
T PRK13503         23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ----P--YTLSGGTVCFVRDHDRHLYEHT   76 (278)
T ss_pred             Ccccccccccc-CceeEEEEecCceeeEecCC----c--ccccCCcEEEECCCccchhhhc
Confidence            34566788998 78899999999998765432    2  2599999999999999974443

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=95.59  E-value=0.068  Score=48.22  Aligned_cols=70  Identities=11%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             eEEEEEecC-CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc----------------------------------eEE
Q 020545          194 SCTILKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK----------------------------------LVL  238 (325)
Q Consensus       194 s~~~v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~----------------------------------~~~  238 (325)
                      ....+-|.+ |+....|+.+ .+-+..+++|+=++.++.|.-.                                  +.+
T Consensus       131 ~~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~  209 (251)
T PF13621_consen  131 QSSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPY  209 (251)
T ss_dssp             CEEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EE
T ss_pred             cccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCcee
Confidence            345567777 6677888876 7899999999999999998510                                  245


Q ss_pred             eEEecCccEEEECCccEEEEEcC-CCC
Q 020545          239 DSEVEAGQLLVVPRCFVVAIIAG-PEG  264 (325)
Q Consensus       239 ~~~l~~Gdv~vvP~G~~h~~~~g-~~~  264 (325)
                      ...|++||+++||+|+.|+..+. +++
T Consensus       210 ~~~l~pGD~LfiP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  210 EVVLEPGDVLFIPPGWWHQVENLSDDD  236 (251)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred             EEEECCCeEEEECCCCeEEEEEcCCCC
Confidence            57899999999999999998776 444

...

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=95.44  E-value=0.26  Score=43.09  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             CCCccCCeecCCC-CEEEEEEeCcEEEEEEeCCC-c----eEEeEEecCc--cEEEECCccEEEEEcCCCCEEEE
Q 020545          202 ANAMLSPTYTADS-VQVFYVVKGSGKAQIVGLNA-K----LVLDSEVEAG--QLLVVPRCFVVAIIAGPEGIECF  268 (325)
Q Consensus       202 pg~~~~Ph~h~~A-~ei~yV~~G~~~~~vv~p~g-~----~~~~~~l~~G--dv~vvP~G~~h~~~~g~~~~~~~  268 (325)
                      +|-++..|||..- .+++.|++|++..-.++-.- +    +.....+.+-  .++.||.|++|=..+.++.++++
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~  128 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVV  128 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEE
Confidence            9999999999998 99999999999999999642 1    2223345544  89999999999877755544433

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=95.03  E-value=0.17  Score=42.22  Aligned_cols=59  Identities=14%  Similarity=0.011  Sum_probs=36.2

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCc-EEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGD-VIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GD-v~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      |....++++|++|+ ..+.+-+..      ....+.|...+ .+.||+|..|-+.|.++. ++++.+.
T Consensus        51 Hk~~~~~~~~l~Gs-~~v~~~d~~------~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~a  110 (131)
T PF05523_consen   51 HKKTTQWFIVLSGS-FKVVLDDGR------EEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLA  110 (131)
T ss_dssp             ESS--EEEEEEES--EEEEEE-SS-------EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEE
T ss_pred             cccccEEEEEEeCE-EEEEEecCC------CcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEc
Confidence            66789999999999 888875544      23467777765 899999999999999766 6666655

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=94.83  E-value=0.2  Score=46.44  Aligned_cols=196  Identities=16%  Similarity=0.160  Sum_probs=86.3

Q ss_pred             eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      .-||.+++++-.||++|. ...+    +.     +....-|.+|.-+..|+|..|+-...+++.+.++-+.+       +
T Consensus        49 ~pph~H~~~~~~~Vi~G~-~~~~----~~-----~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g~-------g  111 (251)
T PF14499_consen   49 SPPHIHNADYRGTVISGE-LHNG----DP-----KAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIEIGE-------G  111 (251)
T ss_dssp             E--BEESS-EEEEEEESE-EEET----TE-----E-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S---------
T ss_pred             CCCcceeeeEEEEEEEeE-EEcC----CC-----cccceecCCCceEeccCCCceeeeccCccEEEEEEeCC-------C
Confidence            457878999999999999 3332    21     21235699999999999999988777665565543321       1


Q ss_pred             cceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCee
Q 020545           91 EFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFC  170 (325)
Q Consensus        91 ~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~  170 (325)
                         .|.+-         |   .+++|.-.+.-+..     +...|+=....   .+...           +-   ++.  
T Consensus       112 ---p~~v~---------p---~~~~~~~~e~p~n~-----~~~~ivwld~~---dl~W~-----------~~---~~~--  152 (251)
T PF14499_consen  112 ---PYDVK---------P---SEEAFDNGERPINV-----DKDNIVWLDAS---DLEWI-----------SA---PPG--  152 (251)
T ss_dssp             ----EE---------------------SS--TT-------GGG-EEEEECC---CS--E-----------E----SSS--
T ss_pred             ---ccccc---------c---cccccccccccccc-----ccccceEeccc---cCCcc-----------cc---CCC--
Confidence               11100         0   02233333222211     11234433331   11100           00   011  


Q ss_pred             ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545          171 VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV  250 (325)
Q Consensus       171 ~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv  250 (325)
                      ...+-.+..+-..  |.  +-.+...++.|-.|-=-.+|+|+ ..+=+|||+|+...++-.-..    ...|.+|.-|.-
T Consensus       153 ~~~g~~~a~Lwgd--~~--~g~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~~----~~~L~~GSYf~s  223 (251)
T PF14499_consen  153 PPPGAQIAFLWGD--PN--TGQYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGASN----FGTLDPGSYFGS  223 (251)
T ss_dssp             TT-SEEEEEEEE---TT--S-EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET----TEEEEE-TT-EE
T ss_pred             CCCcceEEEEecC--CC--CCceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccCC----CccccCCccccc
Confidence            0123334433322  11  11234556777777778889986 668899999999887654321    236889999999


Q ss_pred             CCccEEEEEcCCCCEEEEEEe
Q 020545          251 PRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       251 P~G~~h~~~~g~~~~~~~~~~  271 (325)
                      |....|-..++++++.++.-.
T Consensus       224 ~~~~~H~~~~~e~~~vlyIRt  244 (251)
T PF14499_consen  224 PGHITHGIFITEDECVLYIRT  244 (251)
T ss_dssp             --E------EESS-EEEEEEE
T ss_pred             CCcccccccccCCCEEEEEEE
Confidence            999999865777777766544

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.80  E-value=0.34  Score=46.65  Aligned_cols=200  Identities=14%  Similarity=0.104  Sum_probs=104.1

Q ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCC-CCCCCccee
Q 020545           16 NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSR-AYVPGEFSY   94 (325)
Q Consensus        16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~-~~~p~~~~~   94 (325)
                      .|.++++|+.+|+ .+  +.+.-+        +.+|++||..+||+|+.+-..=.+.+ ++++.+-.... ...|    +
T Consensus       144 ADge~Livpq~G~-l~--l~te~G--------~l~v~pgeiavIPRG~~frve~~~~~-~rgy~~En~ga~~~lp----e  207 (427)
T COG3508         144 ADGELLIVPQQGE-LR--LKTELG--------VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYGCENYGAKFRLP----E  207 (427)
T ss_pred             CCCCEEEEeecce-EE--EEEeec--------eEEecCCcEEEeeCCceEEEEecCCc-eEEEEEeecccccccc----c
Confidence            3567899999998 44  333332        46899999999999999988776544 55554432111 1112    1


Q ss_pred             eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---cc-CCC------CCCCceeeeecC
Q 020545           95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---LP-HQH------GNANLMVNNFAN  164 (325)
Q Consensus        95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~~-~p~------~~~~~~~~nl~~  164 (325)
                      .=+-|++++..-       +-|+++..-.+.  +.++-..++|...    ++.   +. +|.      +.-..++|++..
T Consensus       208 ~G~ig~n~lanp-------RDf~tPvar~ed--~e~~~qlvvK~~g----~l~~~e~~hsPlDVVaWhGnl~Pykydl~~  274 (427)
T COG3508         208 LGPIGANGLANP-------RDFKTPVARYED--SEGPTQLVVKTHG----GLWAVELDHSPLDVVAWHGNLAPYKYDLRD  274 (427)
T ss_pred             ccccccccccCh-------hhccCceeeecc--cCCCeEEEEEecC----cEEEEecCCCCceeEeecCcccceEeeeec
Confidence            112333333321       223333221111  3333356676555    332   11 221      224567888876


Q ss_pred             CCCC----eeccCCeEEEEEcC-CCCcccccccceEE--EEEecCCCccCCeecCC-CCEEEEEEeCcE--EEEEEeCCC
Q 020545          165 FPAD----FCVKKAGMVTSFTG-SNFPFLEQVGLSCT--ILKLDANAMLSPTYTAD-SVQVFYVVKGSG--KAQIVGLNA  234 (325)
Q Consensus       165 ~~p~----~~~~~gG~~~~~~~-~~~p~L~~~gis~~--~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~--~~~vv~p~g  234 (325)
                      -+|.    +.-++---.+++++ .+-|.+...+.=..  |....+++++.|.||-| ++|++..+.|.-  +.       
T Consensus       275 f~pi~t~~~dhPdPSifTvltapsd~~g~~~cdFVifpprw~~~e~tfrppwyHrN~~sEfmgli~G~ydak~-------  347 (427)
T COG3508         275 FNPIGTISYDHPDPSIFTVLTAPSDTPGFANCDFVIFPPRWLVAEQTFRPPWYHRNDMSEFMGLISGQYDAKA-------  347 (427)
T ss_pred             cccccceeccCCCCceEEEEecCCCCCCeeEEEEEecCchhcccccccCCCceecchHHHHHhHhhchhhhhc-------
Confidence            5443    11121112233332 33444432211111  13345699999999988 889988888852  22       


Q ss_pred             ceEEeEEecCccEEEECCccEE
Q 020545          235 KLVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       235 ~~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                           ..+.+|++-.=+.++.|
T Consensus       348 -----~GfvpGg~sLH~~m~~H  364 (427)
T COG3508         348 -----EGFVPGGASLHNCMSAH  364 (427)
T ss_pred             -----cCcCcCcceeccccccc
Confidence                 12456666666666655

>PF12852 Cupin_6: Cupin

Probab=94.68  E-value=0.074  Score=46.51  Aligned_cols=46  Identities=15%  Similarity=0.214  Sum_probs=36.5

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      ...+.+|++|+ +++.+ . +.     .+ ...|++||++++|+|.+|++.-..+
T Consensus        35 ~~~fh~V~~G~-~~l~~-~-~~-----~~-~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   35 GASFHVVLRGS-CWLRV-P-GG-----GE-PIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             ceEEEEEECCe-EEEEE-c-CC-----CC-eEEecCCCEEEEcCCCCeEeCCCCC
Confidence            36789999999 99985 2 21     22 5789999999999999999966544

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=94.58  E-value=0.2  Score=47.95  Aligned_cols=73  Identities=14%  Similarity=0.182  Sum_probs=45.8

Q ss_pred             eEEEEEecCCC--ccCCeecCCCCEEEEEEeCcEEEEEEeCCC-----------------ceEEeEEecCccEEEECCcc
Q 020545          194 SCTILKLDANA--MLSPTYTADSVQVFYVVKGSGKAQIVGLNA-----------------KLVLDSEVEAGQLLVVPRCF  254 (325)
Q Consensus       194 s~~~v~l~pg~--~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g-----------------~~~~~~~l~~Gdv~vvP~G~  254 (325)
                      ..+.+.+.|+|  =+.|||-. -+-++.=+.|+=+..+..+..                 ....+..|++|||+|||+|+
T Consensus       114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~  192 (319)
T PF08007_consen  114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW  192 (319)
T ss_dssp             EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred             cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence            45667899999  89999942 344445566888888887421                 11345689999999999999


Q ss_pred             EEEEEcCCCCEEE
Q 020545          255 VVAIIAGPEGIEC  267 (325)
Q Consensus       255 ~h~~~~g~~~~~~  267 (325)
                      +|.-.+.+..+.+
T Consensus       193 ~H~~~~~~~S~hl  205 (319)
T PF08007_consen  193 WHQAVTTDPSLHL  205 (319)
T ss_dssp             EEEEEESS-EEEE
T ss_pred             cCCCCCCCCceEE
Confidence            9997775544443

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=94.43  E-value=0.073  Score=48.19  Aligned_cols=59  Identities=7%  Similarity=-0.093  Sum_probs=46.7

Q ss_pred             eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .-+-.|.+...|+.+|++|.     +.+.+          ....+||++..|+|..|-..+.+++++..+++.|
T Consensus       138 ~~~p~H~H~G~E~tlVLeG~-----f~de~----------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d  196 (215)
T TIGR02451       138 QSIPQHTHKGFELTLVLHGA-----FSDET----------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD  196 (215)
T ss_pred             CccCCCcCCCcEEEEEEEEE-----EEcCC----------CccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence            33445555678999999999     22221          3479999999999999999999988999998885

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=94.29  E-value=0.29  Score=41.72  Aligned_cols=58  Identities=16%  Similarity=0.343  Sum_probs=43.3

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAI  258 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~  258 (325)
                      .+++.....++-.   --|..+-+|+-||++|+..+.+-   |+ .+.  -.+|||++||.|.-.-+
T Consensus        99 ~l~aG~m~~~~~t---f~wtl~yDe~d~VlEGrL~V~~~---g~-tv~--a~aGDvifiPKgssIef  156 (176)
T COG4766          99 RLGAGLMEMKNTT---FPWTLNYDEIDYVLEGRLHVRID---GR-TVI--AGAGDVIFIPKGSSIEF  156 (176)
T ss_pred             ccccceeeecccc---CcceecccceeEEEeeeEEEEEc---CC-eEe--cCCCcEEEecCCCeEEE
Confidence            3567778888832   35879999999999998876653   22 332  57999999999997544

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=94.08  E-value=0.13  Score=39.81  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=37.3

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIV   78 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~   78 (325)
                      +.+.+-.|.+...|.+||++|+     +.+.+      .    ...+||.+..|+|..|-..-  ++.+.++
T Consensus        33 pG~~~p~H~H~g~ee~~VLeG~-----~~d~~------~----~~~~G~~~~~p~g~~h~~~s--~~gc~~~   87 (91)
T PF12973_consen   33 PGASLPRHRHPGGEEILVLEGE-----LSDGD------G----RYGAGDWLRLPPGSSHTPRS--DEGCLIL   87 (91)
T ss_dssp             TTEEEEEEEESS-EEEEEEECE-----EEETT------C----EEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred             CCCCcCccCCCCcEEEEEEEEE-----EEECC------c----cCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence            4455555555778889999999     33332      2    35999999999999998884  4455443

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=93.90  E-value=0.28  Score=48.66  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=43.8

Q ss_pred             CCCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545          183 SNFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG  261 (325)
Q Consensus       183 ~~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g  261 (325)
                      ..-+.++. |+++..-..+ .+| -.--+|.++++++|+.+|++++.-..  |  .+  ++++||++|||+|..+...-.
T Consensus       116 ~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~--G--~L--~v~pGd~~VIPRG~~~rv~l~  187 (424)
T PF04209_consen  116 AGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLETEF--G--RL--DVRPGDYVVIPRGTRFRVELP  187 (424)
T ss_dssp             ECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEETT--E--EE--EE-TTEEEEE-TT--EEEE-S
T ss_pred             CccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEecC--e--eE--EEcCCeEEEECCeeEEEEEeC
Confidence            44455543 5554433333 345 45557889999999999998877433  4  23  489999999999999875443


Q ss_pred             CCCEE
Q 020545          262 PEGIE  266 (325)
Q Consensus       262 ~~~~~  266 (325)
                       .++.
T Consensus       188 -~p~r  191 (424)
T PF04209_consen  188 -GPAR  191 (424)
T ss_dssp             -SSEE
T ss_pred             -CCce
Confidence             4444

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=93.42  E-value=0.3  Score=45.52  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=39.3

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCC
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS   73 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~   73 (325)
                      -|+-.+.-.+.|+++|+ |.+-+   ++      + .+.+++||++++|+|.+|.+....+.
T Consensus        43 r~~~~~~~~i~~~~~G~-~~~~~---~~------~-~~~~~~g~~i~i~p~~~h~~~~~~~~   93 (290)
T PRK10572         43 RPLGMKGYILNLTIRGQ-GVIFN---GG------R-AFVCRPGDLLLFPPGEIHHYGRHPDS   93 (290)
T ss_pred             cCCCccceEEEEEEecc-EEEec---CC------e-eEecCCCCEEEECCCCceeeccCCCC
Confidence            34444567889999999 88754   42      2 58899999999999999988776554

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=93.13  E-value=0.41  Score=43.23  Aligned_cols=171  Identities=16%  Similarity=0.217  Sum_probs=107.4

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcceeee
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFL   96 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~f~   96 (325)
                      .+....||++|+ ..+.+   ++      + ++.|++|+-.++|+|.-+-+.|...++.++.-+..           .|.
T Consensus        82 ~ae~~lfVv~Ge-~tv~~---~G------~-th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk-----------~Y~  139 (264)
T COG3257          82 GAETFLFVVSGE-ITVKA---EG------K-THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRK-----------RYQ  139 (264)
T ss_pred             cceEEEEEEeee-EEEEE---cC------e-EEEeccCCeEEeCCCCcceEeeccCCceEEEEEee-----------cce
Confidence            466789999999 77766   42      3 68999999999999999999999888887766542           110


Q ss_pred             eccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccCCeE
Q 020545           97 LTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGM  176 (325)
Q Consensus        97 laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~gG~  176 (325)
                      .                         ++-+   |-.+.++ .++.   .+. +.|              =|+   .+|-+
T Consensus       140 ~-------------------------VdG~---~~P~~~~-~Ne~---ei~-~~~--------------m~g---tdg~~  169 (264)
T COG3257         140 P-------------------------VEGV---QAPELVS-GNES---EIE-PSP--------------MEG---TDGVI  169 (264)
T ss_pred             e-------------------------ecCc---cCCccee-cChh---hCC-CCC--------------CCC---CCCeE
Confidence            0                         0100   0001111 1110   000 011              122   13445


Q ss_pred             EEEEcCCCCcccccccceEEEEEecCCCcc---CCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          177 VTSFTGSNFPFLEQVGLSCTILKLDANAML---SPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       177 ~~~~~~~~~p~L~~~gis~~~v~l~pg~~~---~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      .+.++++++    .-++-+..++++|||..   +-|+ .  .-=.||++|++.-..=.    .-+  .+++||.+..-+.
T Consensus       170 attv~P~d~----r~Dmhv~ivsFePGa~ip~aEtHv-m--EHGlyvLeGk~vYrLn~----dwv--~V~aGD~mwm~A~  236 (264)
T COG3257         170 ATTVLPKEL----RFDMHVHIVSFEPGASIPYAETHV-M--EHGLYVLEGKGVYRLNN----NWV--PVEAGDYIWMGAY  236 (264)
T ss_pred             EEeeCcccc----CcceEEEEEEecCCcccchhhhhh-h--hcceEEEecceEEeecC----ceE--EeecccEEEeecc
Confidence            566666554    23688999999999853   3444 1  12379999998665321    122  6999999999999


Q ss_pred             cEEEEEcCCCC-EEEEEEeC
Q 020545          254 FVVAIIAGPEG-IECFSITT  272 (325)
Q Consensus       254 ~~h~~~~g~~~-~~~~~~~~  272 (325)
                      .+-+..++..+ +.++--.+
T Consensus       237 cpQacyagG~g~frYLlyKD  256 (264)
T COG3257         237 CPQACYAGGRGAFRYLLYKD  256 (264)
T ss_pred             ChhhhccCCCCceEEEEEec
Confidence            99888886554 66654443

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=93.10  E-value=0.59  Score=42.05  Aligned_cols=65  Identities=20%  Similarity=0.119  Sum_probs=43.1

Q ss_pred             eeeccccCCCCeEEEEEeCCeEEEEEEcCCCC------C------------------------CCcceEEEEeeCCcEEE
Q 020545            9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQ------K------------------------HSQEEIVLGLRKGDVIP   58 (325)
Q Consensus         9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~------~------------------------~~~~~~~~~l~~GDv~~   58 (325)
                      +..-.|+-..+-+..++.|+ =++.++.|+..      .                        ...+-....|++||+++
T Consensus       142 s~t~lH~D~~~n~~~~i~G~-K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~Lf  220 (251)
T PF13621_consen  142 SFTPLHYDPSHNLLAQIRGR-KRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDVLF  220 (251)
T ss_dssp             EEEEEEE-SSEEEEEEEESE-EEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-EEE
T ss_pred             ceeeeeECchhhhhhccCCC-EEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeEEE
Confidence            34344443467899999999 99999988731      0                        01234567999999999


Q ss_pred             eCCCCeEEEEecCCCC
Q 020545           59 VPLGSASWWYNNGSSD   74 (325)
Q Consensus        59 vP~G~~~~~~N~g~~~   74 (325)
                      ||+|.-|+..|..+++
T Consensus       221 iP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  221 IPPGWWHQVENLSDDD  236 (251)
T ss_dssp             E-TT-EEEEEESTTSS
T ss_pred             ECCCCeEEEEEcCCCC
Confidence            9999999999994343

...

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=92.71  E-value=1  Score=44.86  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=52.2

Q ss_pred             CCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545          184 NFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       184 ~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      .-|.++. |+++.....+. +| -.--+|.++++++|+.+|++++.--.  |  .+  ++++||+.|||+|..+...-.+
T Consensus       125 gD~~~~~-G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G--~L--~v~pgei~VIPRG~~frv~l~~  196 (438)
T PRK05341        125 GDAEAQA-GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATEL--G--VL--DVEPGEIAVIPRGVKFRVELPD  196 (438)
T ss_pred             CCccccc-ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec--c--ce--EecCCCEEEEcCccEEEEecCC
Confidence            3344432 55555544444 56 66678899999999999999987554  3  23  4889999999999998765333


Q ss_pred             CCEE
Q 020545          263 EGIE  266 (325)
Q Consensus       263 ~~~~  266 (325)
                      ..+.
T Consensus       197 gp~r  200 (438)
T PRK05341        197 GPAR  200 (438)
T ss_pred             CCee
Confidence            3333

>PLN02658 homogentisate 1,2-dioxygenase

Probab=92.33  E-value=1.1  Score=44.52  Aligned_cols=69  Identities=25%  Similarity=0.341  Sum_probs=49.9

Q ss_pred             CCCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545          183 SNFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII  259 (325)
Q Consensus       183 ~~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~  259 (325)
                      ..-|.++. |+++.....+. +| ..--+|.+.++++|+.+|++++.--.  |.  +  .+++||+.|||+|..+...
T Consensus       117 ngD~~~~~-G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L--~v~pgei~VIPRG~~frv~  186 (435)
T PLN02658        117 AGSPFLRH-GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTEL--GK--L--QVSPGEIVVIPRGFRFAVD  186 (435)
T ss_pred             CCCccccc-CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEec--cc--e--EecCCCEEEecCccEEEEe
Confidence            33444443 55555444444 56 55578999999999999999987554  32  3  4899999999999998754

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.91  E-value=0.083  Score=52.59  Aligned_cols=85  Identities=19%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             CCeEEEEEcCCCCcc--------cccc--cceEEEEEecCCC--ccCCeecCCCCEEEEEEeCcEEEEEEeCCC------
Q 020545          173 KAGMVTSFTGSNFPF--------LEQV--GLSCTILKLDANA--MLSPTYTADSVQVFYVVKGSGKAQIVGLNA------  234 (325)
Q Consensus       173 ~gG~~~~~~~~~~p~--------L~~~--gis~~~v~l~pg~--~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g------  234 (325)
                      +|-+|+.++++.|-.        |++.  -+.-+-+.|.|-|  =++||| -+-...+.=++|+=+..+..|.-      
T Consensus       286 ~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHy-DdIeaFvlQvEGrK~Wrly~P~~~~eel~  364 (629)
T KOG3706|consen  286 KGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHY-DDIEAFVLQVEGRKHWRLYHPTVPLEELA  364 (629)
T ss_pred             cCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCch-hhhhhhhheeccceeeEeecCCCcHhhhh
Confidence            466777787776521        2221  1234557777744  579999 45666666778999999988852      


Q ss_pred             -------------ceEEeEEecCccEEEECCccEEEE
Q 020545          235 -------------KLVLDSEVEAGQLLVVPRCFVVAI  258 (325)
Q Consensus       235 -------------~~~~~~~l~~Gdv~vvP~G~~h~~  258 (325)
                                   +-+++.-|++||++|+|+|++|--
T Consensus       365 l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA  401 (629)
T KOG3706|consen  365 LVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQA  401 (629)
T ss_pred             hccCCCCChhHhCCchHHhhcCCCcEEEecCcceeec
Confidence                         225566899999999999999974

>PF12852 Cupin_6: Cupin

Probab=91.87  E-value=0.69  Score=40.32  Aligned_cols=43  Identities=21%  Similarity=0.355  Sum_probs=33.7

Q ss_pred             CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          214 SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       214 A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      ...+-+|++|++.+.+=.. + ..+  .|++||++++|+|.+|..-.
T Consensus        35 ~~~fh~V~~G~~~l~~~~~-~-~~~--~L~~GDivllp~g~~H~l~~   77 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRVPGG-G-EPI--RLEAGDIVLLPRGTAHVLSS   77 (186)
T ss_pred             ceEEEEEECCeEEEEEcCC-C-CeE--EecCCCEEEEcCCCCeEeCC
Confidence            4678899999999994431 2 233  59999999999999999744

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=91.78  E-value=0.4  Score=37.91  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=21.2

Q ss_pred             EEEEeeCCcEEEeCCCCeEEEEecCCC
Q 020545           47 IVLGLRKGDVIPVPLGSASWWYNNGSS   73 (325)
Q Consensus        47 ~~~~l~~GDv~~vP~G~~~~~~N~g~~   73 (325)
                      ....-++||.+++|+|..|+..|.|+.
T Consensus        81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~  107 (114)
T PF02373_consen   81 YRFVQKPGEFVFIPPGAYHQVFNLGDN  107 (114)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred             ccceECCCCEEEECCCceEEEEeCCce
Confidence            356889999999999999999999974

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=91.75  E-value=0.71  Score=44.23  Aligned_cols=61  Identities=18%  Similarity=0.090  Sum_probs=36.2

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCC----------CC---CcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQ----------KH---SQEEIVLGLRKGDVIPVPLGSASWWYNNG   71 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~----------~~---~~~~~~~~l~~GDv~~vP~G~~~~~~N~g   71 (325)
                      =+-||+-+.+-+++=+.|+ =...+-.+...          +.   ........|++||++|||+|..|+-...+
T Consensus       127 g~~~H~D~~dvfvlQ~~G~-K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~  200 (319)
T PF08007_consen  127 GFGPHYDDHDVFVLQLEGR-KRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD  200 (319)
T ss_dssp             ESECEE-SSEEEEEEEES--EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred             CccCEECCcccEEEECCce-eEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence            3556665566666677887 77777653210          00   01233578999999999999999999988

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=91.64  E-value=0.95  Score=35.55  Aligned_cols=73  Identities=19%  Similarity=0.185  Sum_probs=38.1

Q ss_pred             EEecCCCccCCeecCCCC-EEEEEE---eCcEEEEEEeCCCc-----------------eEEeEEecCccEEEECCccEE
Q 020545          198 LKLDANAMLSPTYTADSV-QVFYVV---KGSGKAQIVGLNAK-----------------LVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       198 v~l~pg~~~~Ph~h~~A~-ei~yV~---~G~~~~~vv~p~g~-----------------~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                      ...++|+...+|.|+++. .-+|.+   ++.+.+.+.++.+.                 ..+.-+.++||++++|.-+.|
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H   84 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH   84 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence            356789999999999974 334444   24566777776431                 123346899999999999999


Q ss_pred             EEEc--CCCCEEEEEE
Q 020545          257 AIIA--GPEGIECFSI  270 (325)
Q Consensus       257 ~~~~--g~~~~~~~~~  270 (325)
                      ....  +++.=..++|
T Consensus        85 ~v~p~~~~~~Risisf  100 (101)
T PF13759_consen   85 GVPPNNSDEERISISF  100 (101)
T ss_dssp             EE----SSS-EEEEEE
T ss_pred             eccCcCCCCCEEEEEc
Confidence            8433  4444344443

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=90.44  E-value=1.9  Score=34.14  Aligned_cols=68  Identities=25%  Similarity=0.353  Sum_probs=45.7

Q ss_pred             EEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          196 TILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       196 ~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      ..+.|+||+-..-...+.-.-++||++|++.+.     +..   ..+.+|+++++..|-.....+++++++++.+-
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~~---~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~   69 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GEE---DPLEAGQLVVLEDGDEIELTAGEEGARFLLLG   69 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TTT---EEEETTEEEEE-SECEEEEEESSSSEEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CCc---ceECCCcEEEECCCceEEEEECCCCcEEEEEE
Confidence            357888988766555556678999999997552     322   35889999999977776666666777766554

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=89.87  E-value=1.6  Score=43.27  Aligned_cols=69  Identities=22%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             CCCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEE
Q 020545          183 SNFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII  259 (325)
Q Consensus       183 ~~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~  259 (325)
                      ..-|.++ .|+++.....+. +| -.--+|.+.++++|+.+|++++.--.  |.  +  .+++||+.|||+|..+...
T Consensus       118 ngD~~~~-~G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L--~v~pgei~VIPRG~~frv~  187 (429)
T TIGR01015       118 AGDATSR-TGLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEF--GR--L--LVEPNEICVIPRGVRFRVT  187 (429)
T ss_pred             CCChhhc-cCceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEec--cc--e--EecCCCEEEecCccEEEEe
Confidence            3334443 255555544444 56 66678999999999999999887544  42  3  4899999999999997754

Missing in human disease alkaptonuria.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=89.39  E-value=2.5  Score=38.33  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             ceEEEEEecCCC-ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEE
Q 020545          193 LSCTILKLDANA-MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECF  268 (325)
Q Consensus       193 is~~~v~l~pg~-~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~  268 (325)
                      .+=..+++.|+| --.|---++|....||++|+..+.+-   |+ +  +.|++|+-.++|+|..|...| ..++..+.
T Consensus        61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~---G~-t--h~l~eggyaylPpgs~~~~~N~~~~~~rfh  132 (264)
T COG3257          61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE---GK-T--HALREGGYAYLPPGSGWTLRNAQKEDSRFH  132 (264)
T ss_pred             hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc---Ce-E--EEeccCCeEEeCCCCcceEeeccCCceEEE
Confidence            344568898866 77888778999999999999887754   32 2  359999999999999998765 44554433

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=89.08  E-value=1.7  Score=42.09  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             cceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          192 GLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      ..++-.+++..|.- ..|.-  +...|..|++|+|++.--.  +..   ..+++|||++||+.+.....+.++.+..+..
T Consensus       332 eF~v~~~~v~~g~~~~~~~~--~~~SIllv~~G~g~l~~~t--~~~---~~v~rG~V~fI~a~~~i~~~~~sd~~~~yrA  404 (411)
T KOG2757|consen  332 EFAVLETKVPTGESYKFPGV--DGPSILLVLKGSGILKTDT--DSK---ILVNRGDVLFIPANHPIHLSSSSDPFLGYRA  404 (411)
T ss_pred             ceeEEEeecCCCceEEeecC--CCceEEEEEecceEEecCC--CCc---eeeccCcEEEEcCCCCceeeccCcceeeeec
Confidence            35677777777654 44444  6889999999999987543  222   2489999999999998765555665554433

>TIGR02466 conserved hypothetical protein

Probab=88.17  E-value=1.9  Score=38.69  Aligned_cols=76  Identities=14%  Similarity=0.155  Sum_probs=47.9

Q ss_pred             EEEEEecCCCccCCeecCCC--CEEEEEE--eCcEEEEEEeCCCc-----------------eEEeEEecCccEEEECCc
Q 020545          195 CTILKLDANAMLSPTYTADS--VQVFYVV--KGSGKAQIVGLNAK-----------------LVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       195 ~~~v~l~pg~~~~Ph~h~~A--~ei~yV~--~G~~~~~vv~p~g~-----------------~~~~~~l~~Gdv~vvP~G  253 (325)
                      +=.+.+.+|+...+|.||++  +-+.||.  .+.+-..+.+|...                 ....-.-++||++++|.-
T Consensus        98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~  177 (201)
T TIGR02466        98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW  177 (201)
T ss_pred             EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence            33456678999999999997  3455555  34455555555321                 011124589999999999


Q ss_pred             cEEEEE-c-CCCCEEEEEE
Q 020545          254 FVVAII-A-GPEGIECFSI  270 (325)
Q Consensus       254 ~~h~~~-~-g~~~~~~~~~  270 (325)
                      +.|... + +++.-..++|
T Consensus       178 L~H~v~p~~~~~~RISiSF  196 (201)
T TIGR02466       178 LRHEVPPNESEEERISVSF  196 (201)
T ss_pred             CceecCCCCCCCCEEEEEE
Confidence            999843 2 4444444444

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.33  E-value=0.3  Score=48.80  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=41.3

Q ss_pred             eccccCCCCeEEEEEeCCeEEEEEEcCCCCC-------C------Cc--ceEEEEeeCCcEEEeCCCCeEE
Q 020545           11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQK-------H------SQ--EEIVLGLRKGDVIPVPLGSASW   66 (325)
Q Consensus        11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~-------~------~~--~~~~~~l~~GDv~~vP~G~~~~   66 (325)
                      |.|||-+-...++=++|+ -.+-+-.|..+.       +      +.  -...+.|++||++|||+|.+|=
T Consensus       331 faPHyDdIeaFvlQvEGr-K~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQ  400 (629)
T KOG3706|consen  331 FAPHYDDIEAFVLQVEGR-KHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQ  400 (629)
T ss_pred             CCCchhhhhhhhheeccc-eeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceee
Confidence            678888888888889999 888887776421       1      11  1113579999999999999993

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=84.67  E-value=3.2  Score=38.91  Aligned_cols=70  Identities=16%  Similarity=0.070  Sum_probs=52.4

Q ss_pred             CCCccCCeec-CCCCEEEEEEeCcEEEEEEeCCCceEEeEEecC-ccEEEECCccEEEEEcCCCCEE-EEEEe
Q 020545          202 ANAMLSPTYT-ADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEA-GQLLVVPRCFVVAIIAGPEGIE-CFSIT  271 (325)
Q Consensus       202 pg~~~~Ph~h-~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~-Gdv~vvP~G~~h~~~~g~~~~~-~~~~~  271 (325)
                      |++++.||-| +...+..-|++|+..+-+.+.+|...-...+.+ ++.-+||.+..|.....++++. ++.|+
T Consensus        20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy   92 (287)
T PRK12335         20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFY   92 (287)
T ss_pred             hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEE
Confidence            6778899988 567888999999999999999886554455655 4565799999999777655543 33444

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=83.84  E-value=2.1  Score=42.24  Aligned_cols=56  Identities=11%  Similarity=0.122  Sum_probs=37.9

Q ss_pred             EecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCH
Q 020545          241 EVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNE  304 (325)
Q Consensus       241 ~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~  304 (325)
                      .|++||++++|+|.+|....|. .+++-+  +|+|=.+   +|.+  =+.++-+-+...++.+.
T Consensus       240 ~l~pGeaifipAg~~HAyl~G~-~iEima--~SDnv~R---aGlT--~K~idv~~ll~~l~f~~  295 (389)
T PRK15131        240 KLNPGEAMFLFAETPHAYLQGV-ALEVMA--NSDNVLR---AGLT--PKYIDIPELVANVKFEA  295 (389)
T ss_pred             EeCCCCEEEeCCCCCeEEcCCe-EEEEEe--cCCcEEe---cCCC--CCcccHHHHHhhcCCCC
Confidence            6999999999999999987776 566443  4455333   4433  24566666666666543

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=83.32  E-value=3.3  Score=33.28  Aligned_cols=61  Identities=13%  Similarity=-0.007  Sum_probs=40.6

Q ss_pred             eeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCC--CCeEEEEecCC-CCEEEEEE
Q 020545           10 IVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPL--GSASWWYNNGS-SDVVIVFV   80 (325)
Q Consensus        10 ~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~--G~~~~~~N~g~-~~l~~~~~   80 (325)
                      -+-+| |.+-+-+.||++|+ .  .=-+..      .. ...|++|||-++-|  |+.|--.|..+ .+++.+-+
T Consensus        41 gf~~HPH~g~eivTyv~~G~-~--~H~Ds~------G~-~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl  105 (107)
T PF02678_consen   41 GFPMHPHRGFEIVTYVLEGE-L--RHRDSL------GN-RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL  105 (107)
T ss_dssp             EEEEEEECSEEEEEEEEESE-E--EEEETT------SE-EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred             CCCCcCCCCceEEEEEecCE-E--EEECCC------CC-eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence            34555 77788999999998 2  222333      23 36799999999987  56787888877 57776643

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=83.19  E-value=3.6  Score=30.17  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=35.8

Q ss_pred             ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEE
Q 020545            6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVI   57 (325)
Q Consensus         6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~   57 (325)
                      .++..+....-..+.++||++|. ..+...+.++    .......+.+||++
T Consensus         5 ~~g~~i~~~g~~~~~~~~i~~G~-v~~~~~~~~~----~~~~~~~~~~g~~~   51 (91)
T PF00027_consen    5 KKGEVIYRQGDPCDHIYIILSGE-VKVSSINEDG----KEQIIFFLGPGDIF   51 (91)
T ss_dssp             STTEEEEETTSBESEEEEEEESE-EEEEEETTTS----EEEEEEEEETTEEE
T ss_pred             CCCCEEEeCCCcCCEEEEEEECc-eEEEeceecc----eeeeecceeeeccc
Confidence            35566666666689999999999 8888888775    22336788999987

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=82.42  E-value=9.9  Score=33.31  Aligned_cols=67  Identities=12%  Similarity=0.073  Sum_probs=42.9

Q ss_pred             CeEEEEEeCCeEEEEEEcCC--CCCCCcceEEEEeeCCc--EEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           19 HVIPIIIPCELGVAGMVLPN--DQKHSQEEIVLGLRKGD--VIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        19 ~ei~yV~~G~~g~~~~v~~~--~~~~~~~~~~~~l~~GD--v~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      .+++.|++|+ ...-+|+-.  .+.- .+-....|.+++  .++||+|.+|=++...++ ..++...+  +..+|+
T Consensus        68 ~Klv~~~~G~-i~dV~vDlR~~SpTf-g~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~v~Y~~t--~~y~p~  138 (176)
T PF00908_consen   68 AKLVRCLRGE-IFDVAVDLRKGSPTF-GKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AEVLYKVT--NYYDPE  138 (176)
T ss_dssp             EEEEEEEESE-EEEEEEE-BTTSTTT-T-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EEEEEEES--S---GG
T ss_pred             CcEEEEecCe-EEEEEEECCCCCCCC-CEEEEEEeCccccCEEEeCCcceeeEEeccCc-eEEEEecC--CccCcc
Confidence            5899999999 999999832  1110 133356787776  799999999999999766 44444332  344443

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=81.98  E-value=22  Score=30.99  Aligned_cols=78  Identities=9%  Similarity=-0.014  Sum_probs=52.7

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc----e-E--EeEEecCccEEEECCccEEEE-EcC-CC
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK----L-V--LDSEVEAGQLLVVPRCFVVAI-IAG-PE  263 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~----~-~--~~~~l~~Gdv~vvP~G~~h~~-~~g-~~  263 (325)
                      +.+..+.-.||--..+|=|..+..++.|++|..+-+.......    . .  ....+..|.+++.+.+.+|-. +++ ++
T Consensus        75 ~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~  154 (175)
T PF05995_consen   75 FELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDE  154 (175)
T ss_dssp             -EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS
T ss_pred             eEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCC
Confidence            4666788999999999999999999999999998888775433    1 1  112467888888899999987 555 56


Q ss_pred             CEEEEEE
Q 020545          264 GIECFSI  270 (325)
Q Consensus       264 ~~~~~~~  270 (325)
                      .++-+=+
T Consensus       155 ~avSLHv  161 (175)
T PF05995_consen  155 PAVSLHV  161 (175)
T ss_dssp             -EEEEEE
T ss_pred             CEEEEEE
Confidence            5554433

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=80.97  E-value=3  Score=40.58  Aligned_cols=85  Identities=13%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             CcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcE--EEEEEeCC--C--------------ceEEeEEecCcc
Q 020545          185 FPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSG--KAQIVGLN--A--------------KLVLDSEVEAGQ  246 (325)
Q Consensus       185 ~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~--~~~vv~p~--g--------------~~~~~~~l~~Gd  246 (325)
                      +|.-+.-++-+.  ...+||-.-|||-+   -=+|+++|.|  |.++--+.  .              ....+..+.+||
T Consensus       113 lP~wr~ddiMIS--~a~~GGgvg~H~D~---YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGD  187 (383)
T COG2850         113 LPDWRIDDIMIS--FAAPGGGVGPHFDQ---YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGD  187 (383)
T ss_pred             CccccccceEEE--EecCCCccCccccc---hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCc
Confidence            454443343333  67889999999943   2367777665  44443321  0              112346789999


Q ss_pred             EEEECCccEEEEEcCCCCEEEEEEeCCC
Q 020545          247 LLVVPRCFVVAIIAGPEGIECFSITTST  274 (325)
Q Consensus       247 v~vvP~G~~h~~~~g~~~~~~~~~~~s~  274 (325)
                      |.|||+|++|+=++-++-+.+-.-+...
T Consensus       188 iLYiPp~~~H~gvae~dc~tySvG~r~P  215 (383)
T COG2850         188 ILYIPPGFPHYGVAEDDCMTYSVGFRAP  215 (383)
T ss_pred             eeecCCCCCcCCcccccccceeeeccCC
Confidence            9999999999966664444443333333

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=80.62  E-value=3.1  Score=40.40  Aligned_cols=51  Identities=16%  Similarity=0.238  Sum_probs=37.1

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIV   78 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~   78 (325)
                      +.+.|..|++|+ |++..   +.      .....+++|||++||+-+.-.+... ++++..+
T Consensus       352 ~~~SIllv~~G~-g~l~~---~t------~~~~~v~rG~V~fI~a~~~i~~~~~-sd~~~~y  402 (411)
T KOG2757|consen  352 DGPSILLVLKGS-GILKT---DT------DSKILVNRGDVLFIPANHPIHLSSS-SDPFLGY  402 (411)
T ss_pred             CCceEEEEEecc-eEEec---CC------CCceeeccCcEEEEcCCCCceeecc-Ccceeee
Confidence            678899999999 88776   31      1136799999999999998865333 3344443

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=80.46  E-value=5.7  Score=36.86  Aligned_cols=43  Identities=14%  Similarity=0.141  Sum_probs=32.8

Q ss_pred             CCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          212 ADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       212 ~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      ++...+.|+++|++.+.  .. + +.+  .+++||++++|+|.+|....
T Consensus        47 ~~~~~i~~~~~G~~~~~--~~-~-~~~--~~~~g~~i~i~p~~~h~~~~   89 (290)
T PRK10572         47 MKGYILNLTIRGQGVIF--NG-G-RAF--VCRPGDLLLFPPGEIHHYGR   89 (290)
T ss_pred             ccceEEEEEEeccEEEe--cC-C-eeE--ecCCCCEEEECCCCceeecc
Confidence            34568899999999874  22 2 233  59999999999999997544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
3qac_A	465	Structure Of Amaranth 11s Proglobulin Seed Storage		3e-22
1fxz_A	476	Crystal Structure Of Soybean Proglycinin A1ab1b Hom		4e-21
1ud1_A	476	Crystal Structure Of Proglycinin Mutant C88s Length		4e-21
1ucx_A	476	Crystal Structure Of Proglycinin C12g Mutant Length		4e-21
2evx_A	459	Crystal Structure Of Pumpkin Seed Globulin Length =		9e-20
3kgl_A	466	Crystal Structure Of Procruciferin, 11s Globulin Fr		2e-16
3ehk_A	531	Crystal Structure Of Pru Du Amandin, An Allergenic		2e-15
2d5f_A	493	Crystal Structure Of Recombinant Soybean Proglycini		5e-15
1od5_A	492	Crystal Structure Of Glycinin A3b4 Subunit Homohexa		5e-15
3ksc_A	496	Crystal Structure Of Pea Prolegumin, An 11s Seed Gl		6e-15
3c3v_A	510	Crystal Structure Of Peanut Major Allergen Ara H 3		2e-14

>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein From Amaranthus Hypochondriacus L Length = 465

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 134/325 (41%), Gaps = 47/325 (14%)
Query: 28  ELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET---- 83
           E G     +  D+   Q + +  LR+GD+  +P G + W YNNG   +V V + +T    
Sbjct: 111 EQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHA 170
Query: 84  --------SRAYVPG----------EFSYFLLTGAQG---ILGGFSSEFTGRAYNMNENE 122
                   +R Y+ G          +FS     G +    I  GF +     ++ ++E  
Sbjct: 171 NQLDKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEI 230
Query: 123 AKILA----------KSQTGVLIIK----------LGQDESEKIP--LPHQHGNANLMVN 160
           A+ L           + Q G+ +IK           G   S  +P  +     +A L VN
Sbjct: 231 AQKLQAEQDDRGNIVRVQEGLHVIKPPSRAWEEREQGSRGSRYLPNGVEETICSARLAVN 290
Query: 161 NFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYV 220
                 AD    +AG +T+    N P L  + LS     L  NAM++P Y  ++  + Y 
Sbjct: 291 VDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYC 350
Query: 221 VKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGK 280
           V+G G+ QIV    + V D E+  GQL+VVP+ F +   A  +G E  S  TS       
Sbjct: 351 VRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQS 410
Query: 281 LGGKQSVMNGFSASVVQLALNVNEE 305
           L G+ S +      VV     ++ E
Sbjct: 411 LAGRTSAIRSLPIDVVSNIYQISRE 435

>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer Length = 476

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 144/362 (39%), Gaps = 80/362 (22%)
Query: 42  HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-----------RAYVPG 90
             + + +   R+GD+I VP G A W YNN  + VV V + +T+           R Y+ G
Sbjct: 108 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAG 167
Query: 91  --EFSYFLLTGAQG-------------------ILGGFSSEFTGRAYNMNENEAKILAKS 129
             E  +      QG                   IL GF+ EF   A+++++  AK L   
Sbjct: 168 NQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGE 227
Query: 130 ------------QTGVLIIK------------------------LGQDESEKIPLPHQHG 153
                       + G+ +IK                         G+D+  + P   Q  
Sbjct: 228 NEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSK 287
Query: 154 NAN-----------LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA 202
           +             L  N       D    +AG VT+ T  +FP L  + LS     L  
Sbjct: 288 SRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRK 347
Query: 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262
           NAM  P Y  ++  + Y + G    Q+V  N + V D E++ G++L+VP+ FVVA  +  
Sbjct: 348 NAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQS 407
Query: 263 EGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
           +  E  S  T+  P +G L G  S++N     V+Q   N+  +  +  K N    + L+P
Sbjct: 408 DNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPF-KFLVP 466
Query: 323 PK 324
           P+
Sbjct: 467 PQ 468

>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s Length = 476

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 144/362 (39%), Gaps = 80/362 (22%)
Query: 42  HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-----------RAYVPG 90
             + + +   R+GD+I VP G A W YNN  + VV V + +T+           R Y+ G
Sbjct: 108 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAG 167
Query: 91  --EFSYFLLTGAQG-------------------ILGGFSSEFTGRAYNMNENEAKILAKS 129
             E  +      QG                   IL GF+ EF   A+++++  AK L   
Sbjct: 168 NQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGE 227
Query: 130 ------------QTGVLIIK------------------------LGQDESEKIPLPHQHG 153
                       + G+ +IK                         G+D+  + P   Q  
Sbjct: 228 NEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSK 287
Query: 154 NAN-----------LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA 202
           +             L  N       D    +AG VT+ T  +FP L  + LS     L  
Sbjct: 288 SRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRK 347
Query: 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262
           NAM  P Y  ++  + Y + G    Q+V  N + V D E++ G++L+VP+ FVVA  +  
Sbjct: 348 NAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQS 407
Query: 263 EGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
           +  E  S  T+  P +G L G  S++N     V+Q   N+  +  +  K N    + L+P
Sbjct: 408 DNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPF-KFLVP 466
Query: 323 PK 324
           P+
Sbjct: 467 PQ 468

>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant Length = 476

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 144/362 (39%), Gaps = 80/362 (22%)
Query: 42  HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-----------RAYVPG 90
             + + +   R+GD+I VP G A W YNN  + VV V + +T+           R Y+ G
Sbjct: 108 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAG 167
Query: 91  --EFSYFLLTGAQG-------------------ILGGFSSEFTGRAYNMNENEAKILAKS 129
             E  +      QG                   IL GF+ EF   A+++++  AK L   
Sbjct: 168 NQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGE 227
Query: 130 ------------QTGVLIIK------------------------LGQDESEKIPLPHQHG 153
                       + G+ +IK                         G+D+  + P   Q  
Sbjct: 228 NEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSK 287
Query: 154 NAN-----------LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA 202
           +             L  N       D    +AG VT+ T  +FP L  + LS     L  
Sbjct: 288 SRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRK 347
Query: 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262
           NAM  P Y  ++  + Y + G    Q+V  N + V D E++ G++L+VP+ FVVA  +  
Sbjct: 348 NAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQS 407
Query: 263 EGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
           +  E  S  T+  P +G L G  S++N     V+Q   N+  +  +  K N    + L+P
Sbjct: 408 DNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPF-KFLVP 466
Query: 323 PK 324
           P+
Sbjct: 467 PQ 468

>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin Length = 459

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 49/331 (14%)
Query: 43  SQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-----------RAYVPG- 90
            Q + +   R+GD++ VP G + W YN G SD+V++   +T            + Y+ G 
Sbjct: 123 DQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGR 182
Query: 91  ---------EFSYFLLTGAQG-----ILGGFSSEFTGRAYNMN----------ENEAKIL 126
                    E+      G+ G     I  GF+ EF   A+ ++          ++E   +
Sbjct: 183 PEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRI 242
Query: 127 AKSQTGVLIIKLGQDESEK-----IPLPHQHGNA--------NLMVNNFANFPADFCVKK 173
            +      ++   +DE E+     I    +  N          L  N   +  AD    +
Sbjct: 243 VQVDEDFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFNPR 302
Query: 174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN 233
            G +++      P L QV LS     L +NAM++P YT +S  V Y  +G+ + Q+V   
Sbjct: 303 GGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNF 362
Query: 234 AKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSA 293
            + V D EV  GQ+L++P+ FVV   A   G E  +  T+       L G+ S M     
Sbjct: 363 GQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLPL 422
Query: 294 SVVQLALNVNEEFLKFFKENVATSEILIPPK 324
            V+     ++ E  +  K       +L P +
Sbjct: 423 GVLSNMYRISREEAQRLKYGQQEMRVLSPGR 453

>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From Brassica Napus Length = 466

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 45  EEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE--TSRAYVPGEFSYFLLTG--- 99
            + V  +R GD I    G A W+YN+G+  +VIV V +  + +  +      F L G   
Sbjct: 143 HQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNP 202
Query: 100 -------------AQGILGGFSSEFTGRAYNMNENEAKILAKSQ--TGVLIIKLGQDESE 144
                         + IL GF+ E   +A+ ++   A+ L   Q   G +I   G     
Sbjct: 203 QGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVI 262
Query: 145 KIPLPHQHGNANL-----------MVNNFAN-FPADFCVKKAGMVTSFTGSNFPFLEQVG 192
           + PL  Q     +             +N  +   AD    + G +++    + P L  + 
Sbjct: 263 RPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLR 322
Query: 193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR 252
           LS     +  NAM+ P + A++  V YV  G    Q+V  N   V D +V  GQLL +P+
Sbjct: 323 LSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQ 382
Query: 253 CFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKE 312
            F V   A  E        T+    +  L G+ SV+ G    V+     ++ E  +  K 
Sbjct: 383 GFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKF 442
Query: 313 NV 314
           N 
Sbjct: 443 NT 444

>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein From Prunus Dulcis Length = 531

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%)
Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
           AD    +AG +++    N P L  + LS        N + SP +  ++  V YV++G+ +
Sbjct: 368 ADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNAR 427
Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
            Q+V  N   +LD EV+ GQL +VP+   V   AG +G E F+  T     +  L G+ S
Sbjct: 428 VQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENAFINTLAGRTS 487
Query: 287 VMNGFSASVVQLALNVNEEFLKFFKEN 313
            +      V+  A  ++ E  +  K N
Sbjct: 488 FLRALPDEVLANAYQISREQARQLKYN 514

>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4 Subunit, Its Comparison With Mature Glycinin A3b4 Subunit, Responsible For Hexamer Assembly Length = 493

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%)
Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
           ADF   KAG +++      P L Q GLS   + L  N + SP +  ++  V YV +G G+
Sbjct: 341 ADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGR 400
Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIE 266
            ++V      V D E+  GQLLVVP+ FVVA   G +G+E
Sbjct: 401 VRVVNXQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLE 440

>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer Length = 492

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%)
Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
           ADF   KAG +++      P L Q GLS   + L  N + SP +  ++  V YV +G G+
Sbjct: 340 ADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGR 399
Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIE 266
            ++V      V D E+  GQLLVVP+ FVVA   G +G+E
Sbjct: 400 VRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLE 439

>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin From Pisum Sativum L. Length = 496

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%)
Query: 168 DFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKA 227
           D    +AG + + T  + P L  + LS     L  NAM  P Y  ++  + Y +KG  + 
Sbjct: 333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARL 392
Query: 228 QIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSV 287
           Q+V  N   V D E+EAG+ L VP+ + VA  +  +     +  T+ R  + +L G  SV
Sbjct: 393 QVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSV 452
Query: 288 MNGFSASVVQLALNVNEEFLKFFKEN 313
           +N     VV    N+     +  K N
Sbjct: 453 INNLPLDVVAATFNLQRNEARQLKSN 478

>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3 Length = 510

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 1/160 (0%)
Query: 164 NFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKG 223
           N   D    +AG + +    N   L  +GLS     L  NA+  P Y  ++  + Y ++G
Sbjct: 343 NRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRG 402
Query: 224 SGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGG 283
               Q+V  N   V D E++ G +LVVP+ F VA  +  +  E  +  T +RP++  L G
Sbjct: 403 RAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAG 462
Query: 284 KQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP 323
           + SV++     VV  +  +  E  +  K N    +  +PP
Sbjct: 463 ENSVIDNLPEEVVANSYGLPREQARQLKNNNPF-KFFVPP 501

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	5e-63
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	2e-56
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	4e-56
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	2e-53
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	2e-49
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	8e-41
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	5e-11
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	2e-39
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	6e-06
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	8e-39
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	1e-06
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	1e-35
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	7e-35
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	3e-06
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	2e-33
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	3e-05
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	6e-33
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	3e-15
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	4e-28
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	9e-15
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	4e-26
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	6e-11
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	4e-23
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	2e-12
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	2e-17
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	7e-09
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	3e-09
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	3e-06
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	5e-04

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score =  207 bits (528), Expect = 5e-63
 Identities = 73/362 (20%), Positives = 131/362 (36%), Gaps = 76/362 (20%)

Query: 39  DQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY--FL 96
            ++  + +    +R+GDV+ +P G A W YN+G  ++V V +   S  +   + +   F 
Sbjct: 164 FRQLDRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFY 223

Query: 97  LTG-----------------------------------------AQGILGGFSSEFTGRA 115
           L G                                            +  GF+++   +A
Sbjct: 224 LAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQA 283

Query: 116 YNMNENEA-KILAKSQTGVLIIKLGQDESEKIPLPHQHG--------------------- 153
            N+NE  A  +  ++     II++  +     P   +                       
Sbjct: 284 LNVNEETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQ 343

Query: 154 -----------NANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA 202
                      +  L  N      AD    +AG +++    N P L  + LS        
Sbjct: 344 LMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYR 403

Query: 203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP 262
           N + SP +  ++  V YV++G+ + Q+V  N   +LD EV+ GQL +VP+   V   AG 
Sbjct: 404 NGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGN 463

Query: 263 EGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
           +G E F+  T     +  L G+ S +      V+  A  ++ E  +  K N   +  L  
Sbjct: 464 QGFEYFAFKTEENAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQETIALSS 523

Query: 323 PK 324
            +
Sbjct: 524 SQ 525

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score =  188 bits (479), Expect = 2e-56
 Identities = 74/313 (23%), Positives = 117/313 (37%), Gaps = 32/313 (10%)

Query: 44  QEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAY--VPGEFSYFLLTG-- 99
             + V  +R GD I    G A W+YN+G+  +VIV V + +     +      F L G  
Sbjct: 142 MHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNN 201

Query: 100 --------------AQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEK 145
                          + IL GF+ E   +A+ ++   A+ L   Q     I   Q     
Sbjct: 202 PQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSV 261

Query: 146 IPLPHQH--------------GNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQV 191
           I  P +                +A    N      AD    + G +++    + P L  +
Sbjct: 262 IRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFL 321

Query: 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP 251
            LS     +  NAM+ P + A++  V YV  G    Q+V  N   V D +V  GQLL +P
Sbjct: 322 RLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIP 381

Query: 252 RCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFK 311
           + F V   A  E        T+    +  L G+ SV+ G    V+     ++ E  +  K
Sbjct: 382 QGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVK 441

Query: 312 ENVATSEILIPPK 324
            N   + +     
Sbjct: 442 FNTIETTLTHSSG 454

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score =  187 bits (476), Expect = 4e-56
 Identities = 79/332 (23%), Positives = 124/332 (37%), Gaps = 47/332 (14%)

Query: 39  DQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRA---YVPGEFSYF 95
           D+   Q + +  LR+GD+  +P G + W YNNG   +V V + +T+           + F
Sbjct: 122 DRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRF 181

Query: 96  LLTG----------------------AQGILGGFSSEFTGRAYNMNENEAKILAKSQTGV 133
            L G                         I  GF +     ++ ++E  A+ L   Q   
Sbjct: 182 YLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDR 241

Query: 134 LII--------------KLGQDESEKIPLPHQHGN--------ANLMVNNFANFPADFCV 171
             I              +  ++  +         N        A L VN      AD   
Sbjct: 242 GNIVRVQEGLHVIKPPSRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVYT 301

Query: 172 KKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG 231
            +AG +T+    N P L  + LS     L  NAM++P Y  ++  + Y V+G G+ QIV 
Sbjct: 302 PEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVN 361

Query: 232 LNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGF 291
              + V D E+  GQL+VVP+ F +   A  +G E  S  TS       L G+ S +   
Sbjct: 362 DQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQSLAGRTSAIRSL 421

Query: 292 SASVVQLALNVNEEFLKFFKENVATSEILIPP 323
              VV     ++ E     K N   + +    
Sbjct: 422 PIDVVSNIYQISREEAFGLKFNRPETTLFRSS 453

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score =  180 bits (458), Expect = 2e-53
 Identities = 79/360 (21%), Positives = 134/360 (37%), Gaps = 65/360 (18%)

Query: 30  GVAGMVLPNDQKHSQEEIVLG----------------LRKGDVIPVPLGSASWWYNNGSS 73
           G+ G+ +P   +  Q ++                    R+GD++ VP G + W YN G S
Sbjct: 94  GIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQS 153

Query: 74  DVVIVFVGETSRAY--VPGEFSYFLLTG------------------------AQGILGGF 107
           D+V++   +T      +      F L G                        +  I  GF
Sbjct: 154 DLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRKGSSGEKSGNIFSGF 213

Query: 108 SSEFTGRAYNMNENEA-KILAKSQTGVLIIKLGQDESEKIPLPHQH-------------- 152
           + EF   A+ ++     K+  +      I+++ +D    +P   +               
Sbjct: 214 ADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIESESES 273

Query: 153 --------GNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANA 204
                       L  N   +  AD    + G +++      P L QV LS     L +NA
Sbjct: 274 ENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNA 333

Query: 205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEG 264
           M++P YT +S  V Y  +G+ + Q+V    + V D EV  GQ+L++P+ FVV   A   G
Sbjct: 334 MVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRG 393

Query: 265 IECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPK 324
            E  +  T+       L G+ S M      V+     ++ E  +  K       +L P +
Sbjct: 394 FEWIAFKTNDNAITNLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEMRVLSPGR 453

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  170 bits (431), Expect = 2e-49
 Identities = 89/391 (22%), Positives = 140/391 (35%), Gaps = 97/391 (24%)

Query: 30  GVAGMVLPN-----------------DQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS 72
           G+ GM+ P                   +   + + +   R+GD+I VP G A W YNN  
Sbjct: 79  GIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNED 138

Query: 73  SDVVIVFVGETSRAY--VPGEFSYFLLTG------------------------------A 100
           + VV V + +T+     +      F L G                               
Sbjct: 139 TPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEG 198

Query: 101 QGILGGFSSEFTGRAYNMNENEAKILAKSQTGV---LIIKLGQDESEKIPLPHQH----- 152
             IL GF+ EF   A+++++  AK L     G     I+ +    S   P   +      
Sbjct: 199 GSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQ 258

Query: 153 ---------------------------------------GNANLMVNNFANFPADFCVKK 173
                                                      L  N       D    +
Sbjct: 259 EEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQ 318

Query: 174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN 233
           AG VT+ T  +FP L  + LS     L  NAM  P Y  ++  + Y + G    Q+V  N
Sbjct: 319 AGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCN 378

Query: 234 AKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSA 293
            + V D E++ G++L+VP+ FVVA  +  +  E  S  T+  P +G L G  S++N    
Sbjct: 379 GERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPE 438

Query: 294 SVVQLALNVNEEFLKFFKENVATSEILIPPK 324
            V+Q   N+  +  +  K N    + L+PP+
Sbjct: 439 EVIQHTFNLKSQQARQIKNN-NPFKFLVPPQ 468

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  148 bits (373), Expect = 8e-41
 Identities = 62/331 (18%), Positives = 111/331 (33%), Gaps = 43/331 (12%)

Query: 34  MVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFS 93
             L  + +          R+     +P    S        +      G+ SR    G+  
Sbjct: 176 FNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEE 235

Query: 94  YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKS----QTGVLIIKLGQDESEKIPLP 149
                    I  GF+ EF  +A+ +++ +     +     +    I+ +        P  
Sbjct: 236 EH---EGGNIFSGFTPEFLAQAFQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDR 292

Query: 150 HQH------------------------------------GNANLMVNNFANFPADFCVKK 173
            +                                       A +  N   N   D    +
Sbjct: 293 KRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQ 352

Query: 174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN 233
           AG + +    N   L  +GLS     L  NA+  P Y  ++  + Y ++G    Q+V  N
Sbjct: 353 AGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSN 412

Query: 234 AKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSA 293
              V D E++ G +LVVP+ F VA  +  +  E  +  T +RP++  L G+ SV++    
Sbjct: 413 GNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVIDNLPE 472

Query: 294 SVVQLALNVNEEFLKFFKENVATSEILIPPK 324
            VV  +  +  E  +  K N      + P +
Sbjct: 473 EVVANSYGLPREQARQLKNNNPFKFFVPPSQ 503

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 39  DQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAY--VPGEFSYFL 96
            Q+    + V    +GD+I VP G A W YN+  +DVV V + +T+     +      F 
Sbjct: 118 QQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFN 177

Query: 97  LTGAQGILGGFSSEFTGRAYNMNE---NEAKILAKSQTGVLIIKLGQDESEKIPLPHQHG 153
           L G          + + ++   +      +      Q        GQ    +     +  
Sbjct: 178 LAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEH 237

Query: 154 NANLMVNNF 162
               + + F
Sbjct: 238 EGGNIFSGF 246

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score =  142 bits (359), Expect = 2e-39
 Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 68/343 (19%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGETSRAYV 88
               +   N++K         L +G  + +P G  S+  N   + ++ +  +        
Sbjct: 75  ATVTVANGNNRK------SFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPV--NT 126

Query: 89  PGEFSYFLLTGAQ---GILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEK 145
           PG+F  F    ++     L GFS      A+N   NE + +   +      +        
Sbjct: 127 PGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWS 186

Query: 146 IPLPHQ------------------------------HGNANLMVNNFANFPADFCVKKAG 175
                                                G+    +N     P D       
Sbjct: 187 TRSSENNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEP-DLSNNFGK 245

Query: 176 MVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN-- 233
           +         P L+ + +  T +++   A++ P + + ++ +  V KG+G  ++V +   
Sbjct: 246 LFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKE 305

Query: 234 ----------------------AKLVLDSEVEAGQLLVVPRCFVVAIIAGPE-GIECFSI 270
                                       + ++ G + ++P    VAI A  E  +  F I
Sbjct: 306 QQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSELHLLGFGI 365

Query: 271 TTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKEN 313
                  +   G K +V++        LA   + E ++   +N
Sbjct: 366 NAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKN 408

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 177 VTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL 236
           +  F   +  F          ++   N ++ P +  D+  +  + +G     +   N + 
Sbjct: 28  LQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHA-DADNILVIQQGQATVTVANGNNRK 86

Query: 237 VLDSEVEAGQLLVVPRCFVVAIIAGPEG----IECFSITTST-----RPALGKLGGKQSV 287
             +  ++ G  L +P  F+  I+   +     +   S+  +T              + S 
Sbjct: 87  SFN--LDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSY 144

Query: 288 MNGFSASVVQLALNVNEEFLKFFKEN 313
           + GFS + ++ A N     ++     
Sbjct: 145 LQGFSRNTLEAAFNAEFNEIRRVLLE 170

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score =  141 bits (356), Expect = 8e-39
 Identities = 52/327 (15%), Positives = 117/327 (35%), Gaps = 40/327 (12%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGETSRAYV 88
            V  +V P+ +          L +G    +P G+  +  N   + ++ I+ +        
Sbjct: 92  AVLTLVNPDSRD------SYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPV--NN 143

Query: 89  PGEFSYFLLTGAQ---GILGGFSSEFTGRAYNMNENEA-KILAKSQTGVLIIKLGQDESE 144
           P  F  F L+  +     L GFS      +++ +  E  ++L   +      +  ++E  
Sbjct: 144 PHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGV 203

Query: 145 KIP--------LPHQHGNANLMVNNFANFP------ADFCVKKAGMVTSFTGSNFPFLEQ 190
            +         L     +++    +  + P            K G     T    P L+ 
Sbjct: 204 IVELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKD 263

Query: 191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN------------AKLVL 238
           + +  + + +   A+L P Y++ ++ +  + +G  K ++VGL+                 
Sbjct: 264 LDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRY 323

Query: 239 DSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQ 297
            +E+    + V+P  + VAI A        F I           GGK +VM+     V++
Sbjct: 324 RAELSEDDVFVIPAAYPVAINATSNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVLE 383

Query: 298 LALNVNEEFLKFFKENVATSEILIPPK 324
           ++   + + ++   +  + S  +    
Sbjct: 384 VSFPASGKKVEKLIKKQSESHFVDAQP 410

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 20/141 (14%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 177 VTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL 236
           +  F   +              K   N +L P +  D+  +  V+ G+    +V  +++ 
Sbjct: 45  LQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHA-DADFLLVVLNGTAVLTLVNPDSRD 103

Query: 237 VLDSEVEAGQLLVVPRCFVVAIIAGPEG----IECFSITTST-----RPALGKLGGKQSV 287
                +E G    +P      ++   +     I   +I  +         L     +QS 
Sbjct: 104 SYI--LEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSY 161

Query: 288 MNGFSASVVQLALNVNEEFLK 308
           + GFS ++++ + + + + + 
Sbjct: 162 LRGFSKNILEASFDSDFKEIN 182

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score =  132 bits (333), Expect = 1e-35
 Identities = 53/313 (16%), Positives = 113/313 (36%), Gaps = 26/313 (8%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP 89
            +  +V P+ +          L +GD I +  G+  +  N  ++  + +          P
Sbjct: 117 AILVLVNPDGRD------TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILK-FAITFRRP 169

Query: 90  GEFSYFLLTGAQ---GILGGFSSEFTGRAYNMNENEA-KILAKSQTGVLIIKLGQDESEK 145
           G    F L+  +     L  FS  F   +Y+   +E  + L + +   +I+K+ +D+ ++
Sbjct: 170 GTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQE 229

Query: 146 IPLPHQHGNANLMVNNFANF----PADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLD 201
           I    Q  +   + +    F             G +   T      L  + +    L+++
Sbjct: 230 ISKHAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMN 289

Query: 202 ANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL----------VLDSEVEAGQLLVVP 251
             A+  P Y + +  +    +G  + ++VGL  +              + +  G ++V+P
Sbjct: 290 EGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIP 349

Query: 252 RCFVVAIIAGPEGIECFSITTSTRPALGKL-GGKQSVMNGFSASVVQLALNVNEEFLKFF 310
             F VA+ A  +         +       L G K++V+      V  L    + E ++  
Sbjct: 350 SSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEEL 409

Query: 311 KENVATSEILIPP 323
            EN   S  +   
Sbjct: 410 LENQKESYFVDGQ 422

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score =  129 bits (326), Expect = 7e-35
 Identities = 46/308 (14%), Positives = 102/308 (33%), Gaps = 21/308 (6%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG-SSDVVIVFVGETSRAYV 88
            +  +V P+D++             D   +P G+  +  N     D+ I+ +        
Sbjct: 83  AILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQ 142

Query: 89  PGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPL 148
             EF        Q  L  FS      ++N    E   +   + G     +   +SE+I  
Sbjct: 143 IHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKE 202

Query: 149 PHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSP 208
             +H  ++   +            + G +T  T ++        +  + ++++  A+  P
Sbjct: 203 LSKHAKSSSRKSLSKQDN-TIGN-EFGNLTERTDNSLN------VLISSIEMEEGALFVP 254

Query: 209 TYTADSVQVFYVVKGSGKAQIVGLNAKL------VLDSEVEAGQLLVVPRCFVVAIIA-G 261
            Y + ++ +  V +G    ++VG              +E+    + V+P  + VAI A  
Sbjct: 255 HYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATS 314

Query: 262 PEGIECFSITTSTRPALGKLGGKQSVMNG-----FSASVVQLALNVNEEFLKFFKENVAT 316
                 F I  +        G   +V++          V+ L  + + + +       + 
Sbjct: 315 NVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSG 374

Query: 317 SEILIPPK 324
           S  +    
Sbjct: 375 SYFVDAHH 382

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 16/161 (9%)

Query: 177 VTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK- 235
           +  F   +              +     +L P    D+  +  V  GS    +V  + + 
Sbjct: 36  LQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRR 94

Query: 236 ---LVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPA---------LGKLGG 283
               +            +P    +  +  P+  E   I     P          L     
Sbjct: 95  EYFFLTSDNPIFSDHQKIPAG-TIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEA 153

Query: 284 KQSVMNGFSASVVQLALNVN-EEFLKFFKENVATSEILIPP 323
           +QS +  FS  +++ + N   EE  +   E     E +I  
Sbjct: 154 QQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVN 194

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score =  126 bits (317), Expect = 2e-33
 Identities = 46/324 (14%), Positives = 116/324 (35%), Gaps = 40/324 (12%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGETSRAYV 88
            +  +V  +D+          L  GD   +P G+  +  N     ++ ++++        
Sbjct: 80  AILTLVNNDDRD------SYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPV--NK 131

Query: 89  PGEFSYFLLTGAQG---ILGGFSSEFTGRAYNMNENEA-KILA-----KSQTGVLIIKLG 139
           PG +  F L+  Q     L GFS      +++    E  ++L      + Q   +I++L 
Sbjct: 132 PGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELS 191

Query: 140 QDESEKIPLPHQHGNANLMVNNFANFPADFCVKK------AGMVTSFTGSNFPFLEQVGL 193
           +++  +  L  +  +++    +  + P +   +        G     T    P L  + +
Sbjct: 192 KEQIRQ--LSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDI 249

Query: 194 SCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLV-------------LDS 240
             + + ++  A+L P + + ++ +  + +G    ++VG+  +                 +
Sbjct: 250 FLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRA 309

Query: 241 EVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKL-GGKQSVMNGFSASVVQLA 299
           E+    + V+P  +   + A            +       L G K +V+      V +LA
Sbjct: 310 ELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELA 369

Query: 300 LNVNEEFLKFFKENVATSEILIPP 323
              + + ++   +    S  +   
Sbjct: 370 FPGSAQDVERLLKKQRESYFVDAQ 393

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 12/138 (8%)

Query: 177 VTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL 236
           +  F   +              +   N +L P +  D+  + +V+ G     +V  + + 
Sbjct: 33  LQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHA-DADFLLFVLSGRAILTLVNNDDRD 91

Query: 237 VLDSEVEAGQLLVVPRCFVVAIIAGPEG----IECFSITTSTRPA-----LGKLGGKQSV 287
             +  +  G    +P      ++   +     +   +I  +         L     +QS 
Sbjct: 92  SYN--LHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSY 149

Query: 288 MNGFSASVVQLALNVNEE 305
           + GFS ++++ + +   E
Sbjct: 150 LQGFSHNILETSFHSEFE 167

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  126 bits (317), Expect = 6e-33
 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 7/205 (3%)

Query: 120 ENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTS 179
           E + K    SQ G    +      E +        A L +N   +   D    +AG + +
Sbjct: 291 EEDKKERGGSQKGKSRRQGDNGLEETVC------TAKLRLNIGPSSSPDIYNPEAGRIKT 344

Query: 180 FTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLD 239
            T  + P L  + LS     L  NAM  P Y  ++  + Y +KG  + Q+V  N   V D
Sbjct: 345 VTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFD 404

Query: 240 SEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLA 299
            E+EAG+ L VP+ + VA  +  +     +  T+ R  + +L G  SV+N     VV   
Sbjct: 405 GELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVINNLPLDVVAAT 464

Query: 300 LNVNEEFLKFFKENVATSEILIPPK 324
            N+     +  K N    + L+P +
Sbjct: 465 FNLQRNEARQLKSN-NPFKFLVPAR 488

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score = 75.4 bits (184), Expect = 3e-15
 Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 43/168 (25%)

Query: 30  GVAGMVLPND----------------QKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS 73
           G  GMV P                  +   + + V   R+GD+I VP G   W YN+  +
Sbjct: 77  GYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDT 136

Query: 74  DVVIVFVGETSRA--YVPGEFSYFLLTG----------------------AQGILGGFSS 109
            V+ V + +   +   +      F L G                         I  GF  
Sbjct: 137 PVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGFKR 196

Query: 110 EFTGRAYNMNENEAKIL---AKSQTGVLIIKLGQDESEKIPLPHQHGN 154
           +F   A+N+N +    L    + +    I+K+    S   P   Q  +
Sbjct: 197 DFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQARH 244

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Length = 493

 Score = 73.8 bits (180), Expect = 9e-15
 Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 56/179 (31%)

Query: 30  GVAGMVLPNDQKHSQE--------------------EIVLGLRKGDVIPVPLGSASWWYN 69
           G  G   P   +  ++                    + +    +GDV+ +P G   W YN
Sbjct: 76  GAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYN 135

Query: 70  NGSSDVVIVFVGETSRAYVPGEFSY--FLLTG---------------------------- 99
            G   VV + + +TS      + +   F L G                            
Sbjct: 136 TGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQ 195

Query: 100 -----AQGILGGFSSEFTGRAYNMNENEAK-ILAKSQTGVLIIKLGQDESEKIPLPHQH 152
                   +L GFS  F  +++N NE+ A+ + +       I+ +    S   P   + 
Sbjct: 196 QQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKWQEQ 254

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  105 bits (263), Expect = 4e-26
 Identities = 37/295 (12%), Positives = 79/295 (26%), Gaps = 21/295 (7%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP 89
               +  P  +    +     + KG +   P G        G      + V         
Sbjct: 84  TRITLTSPEGKVEIAD-----VDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGT---F 135

Query: 90  GEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLP 149
            E + F +T     L      +          +   L K Q  +                
Sbjct: 136 SEGATFSVTD---WLSHTPIAWVEENLGWTAAQVAQLPKKQVYISSYGPASGPLASATPQ 192

Query: 150 HQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPT 209
            Q     +   +               +   +   FP      ++  ++ L+  AM    
Sbjct: 193 GQTAKIEVPHTHNLLGQQPLVSLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQLH 250

Query: 210 YTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII-AGPEGIECF 268
           +  ++ +  YV+ G     +     K    S ++ G +  VP+ +  AI  +  + ++  
Sbjct: 251 WHPNADEWQYVLDGEMDLTVFASEGKAS-VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIV 309

Query: 269 SITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP 323
            +          L    + +    +SV+     ++ E  K          I   P
Sbjct: 310 VVFNDGDYQSIDLS---TWLASNPSSVLGNTFQISPELTKKLP---VQDTIFSLP 358

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 61.7 bits (149), Expect = 6e-11
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 4/136 (2%)

Query: 171 VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIV 230
           +   G        NFP     G++   + L+  A+    + A++ +  YV++G  +  + 
Sbjct: 32  LYDGGTTKQVGTYNFPVS--KGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLT 89

Query: 231 GLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMN 289
               K+ +  +V+ G L   PR +  +I   GP+  +   +      + G        ++
Sbjct: 90  SPEGKVEIA-DVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSVTDWLS 148

Query: 290 GFSASVVQLALNVNEE 305
               + V+  L     
Sbjct: 149 HTPIAWVEENLGWTAA 164

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 97.6 bits (242), Expect = 4e-23
 Identities = 36/296 (12%), Positives = 83/296 (28%), Gaps = 24/296 (8%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP 89
               +V    +    +     + +GD+   P G              ++           
Sbjct: 110 ARVTIVDEKGRSFIDD-----VGEGDLWYFPSGLPHSIQALEEGAEFLLVFD-------D 157

Query: 90  GEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLP 149
           G FS          L     E     + + + E   L   +  +   +L     + I   
Sbjct: 158 GSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEG 217

Query: 150 HQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPT 209
                       +     +    + G V     +NF   +   ++  ++ ++  AM    
Sbjct: 218 PNGEVPYPF--TYRLLEQEPIESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELH 273

Query: 210 YTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII-AGPEGIECF 268
           +  ++ +  Y + G  +  +   +         +AG +  VP      +   G E +   
Sbjct: 274 WHPNTHEWQYYISGKARMTVFASDGHAR-TFNYQAGDVGYVPFAMGHYVENIGDEPLVFL 332

Query: 269 SITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPK 324
            I      A   L      +     + VQ  L++ ++F     +       ++  K
Sbjct: 333 EIFKDDHYADVSLN---QWLAMLPETFVQAHLDLGKDFTDVLSKE---KHPVVKKK 382

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 66.4 bits (161), Expect = 2e-12
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 146 IPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAM 205
           +P    HG  + M  +F++      ++K G     T    P  E   L+   ++L   A+
Sbjct: 36  VPPETDHGTVSNMKFSFSDTHNR--LEKGGYAREVTVRELPISE--NLASVNMRLKPGAI 91

Query: 206 LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGI 265
               +     +  Y++ GS +  IV    +  +D +V  G L   P     +I A  EG 
Sbjct: 92  RELHWH-KEAEWAYMIYGSARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGA 149

Query: 266 ECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKEN 313
           E   +      +          +      V+     V +E +      
Sbjct: 150 EFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK 197

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGETSRAYV 88
            +  +V P+ +          L +GD I +  G+  +  N  ++ ++ I+    T     
Sbjct: 72  AILVLVNPDGRD------TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITF--RR 123

Query: 89  PGEFSYFLLTGAQG---ILGGFSSEFTGRAYNMNENEA-KILAKSQTGVLIIKL 138
           PG    F L+  +     L  FS  F   +Y+   +E  + L + +   +I+K+
Sbjct: 124 PGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM 177

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 21/158 (13%), Positives = 50/158 (31%), Gaps = 13/158 (8%)

Query: 176 MVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK 235
           ++  F                      N +L P ++ DS  +  V++G     +V  + +
Sbjct: 24  LLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHS-DSDLLVLVLEGQAILVLVNPDGR 82

Query: 236 LVLDSEVEAGQLLVVPRCFVVAIIAGPEG----IECFSITTST-----RPALGKLGGKQS 286
                 ++ G  + +       +I         I  F+IT           L       S
Sbjct: 83  DTYK--LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPS 140

Query: 287 VMNGFSASVVQLALNVNEEFL-KFFKENVATSEILIPP 323
            ++ FS + ++ + +   + + +   +      I+  P
Sbjct: 141 YLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP 178

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 8/156 (5%)

Query: 166 PADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSG 225
             +        VT    + +P    +G+S   +         P     + ++  V+KG  
Sbjct: 45  AGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGEL 104

Query: 226 KAQIVGL--NAKLVLDSEVEAGQLLVVPRCFV-VAIIAGPEGIECFSITTSTRPALGKLG 282
              I+G   +   +    V AG+  V+PR  +      G           S  P  G + 
Sbjct: 105 LVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNP--GIVF 162

Query: 283 GKQSVMN---GFSASVVQLALNVNEEFLKFFKENVA 315
              ++          V+  AL V    ++  K   A
Sbjct: 163 VPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFA 198

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Length = 79

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL 232
             G +   T      L  + +    L+++  A+  P Y + +  +    +G  + ++VGL
Sbjct: 16  NYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGL 75

Query: 233 N 233
            
Sbjct: 76  E 76

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 30/236 (12%), Positives = 57/236 (24%), Gaps = 29/236 (12%)

Query: 51  LRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSE 110
           L   D +  P G+        S    I   G           +  L          F   
Sbjct: 166 LGANDFVLTPNGTWHEHGILESGTECIWQDGLDI------PLTNCLEAN-------FYEV 212

Query: 111 FTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPL---PHQHGNANLMVNNFANFPA 167
                   +              L+ +L + +    PL     +     L+    A+  +
Sbjct: 213 HPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGS 272

Query: 168 DFCVKKAGMVTSFTG-SNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
            +           TG           +  ++  L             +  ++ V KG G 
Sbjct: 273 PYDGLILRYTNPQTGGHPML-----TMGASMQMLRPGEHTKAHRHTGN-VIYNVAKGQGY 326

Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLG 282
           + + G         +     +  VP           E  +    + +  P + KLG
Sbjct: 327 SIVGGK------RFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFNDFPVMEKLG 376

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	100.0
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	100.0
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	100.0
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	100.0
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	100.0
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	100.0
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	100.0
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	100.0
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	100.0
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	100.0
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	100.0
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	100.0
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	100.0
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	100.0
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	100.0
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.96
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.96
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.96
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.95
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.95
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.95
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.94
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.94
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.94
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.94
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.93
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.93
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.92
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.91
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.91
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.91
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.88
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.86
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.85
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.77
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.77
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.74
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.72
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.69
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.67
1sef_A	274	Conserved hypothetical protein; structural genomic	99.63
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.61
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.59
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.51
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.48
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.47
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.47
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.41
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.31
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.11
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.02
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.01
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	98.95
1v70_A	105	Probable antibiotics synthesis protein; structural	98.94
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.93
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	98.87
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.86
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.86
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.81
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.78
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.77
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.76
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.76
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.75
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.74
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.74
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.73
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.72
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.72
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.71
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.7
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.7
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	98.68
3h8u_A	125	Uncharacterized conserved protein with double-STR	98.68
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.68
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.68
1v70_A	105	Probable antibiotics synthesis protein; structural	98.67
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.67
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.67
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.67
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.65
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.64
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.64
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	98.62
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.61
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.59
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.58
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	98.57
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.56
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.56
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.54
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.54
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.54
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.53
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.52
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.51
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.51
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.51
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.5
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.49
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.49
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.49
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.47
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.46
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.45
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.45
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.45
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.44
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.43
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.42
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.41
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.38
1sef_A	274	Conserved hypothetical protein; structural genomic	98.37
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.37
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.36
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.36
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.36
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.35
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.34
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.34
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.33
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.33
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.32
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.32
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.31
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.3
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.3
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.3
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.29
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.27
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.27
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.27
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.24
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.23
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.23
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.22
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.22
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.21
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.2
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.19
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.18
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.15
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.15
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.13
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.13
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.06
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.06
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.01
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.88
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	97.87
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	97.86
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	97.85
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	97.84
3bcw_A	123	Uncharacterized protein; structural genomics, join	97.82
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	97.81
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	97.81
3bcw_A	123	Uncharacterized protein; structural genomics, join	97.76
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.73
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	97.71
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.68
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.63
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.61
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.61
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.56
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.54
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.43
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.38
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.35
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.31
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.21
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.19
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	97.14
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.13
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.12
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.03
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.02
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	96.98
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	96.96
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	96.95
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	96.8
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	96.73
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	96.68
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	96.56
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	96.52
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	96.35
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	96.26
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	96.22
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	96.19
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	95.91
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	95.87
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	95.86
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	95.76
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	95.76
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	95.73
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	95.69
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	95.68
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	95.64
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	95.58
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	95.55
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	95.48
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	95.47
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	95.4
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	95.32
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	95.28
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	95.22
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	95.03
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	94.96
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	94.9
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	94.83
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	94.62
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	94.49
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	94.4
4diq_A	489	Lysine-specific demethylase NO66; structural genom	94.39
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	94.2
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	94.18
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	93.91
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	93.06
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	93.06
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	93.01
3uss_A	211	Putative uncharacterized protein; cupin, three his	92.76
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	92.58
4diq_A	489	Lysine-specific demethylase NO66; structural genom	92.0
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	91.87
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	91.71
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	91.12
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	91.08
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	90.69
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	90.29
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	90.23
3kv5_D	488	JMJC domain-containing histone demethylation prote	89.71
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	89.24
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	89.16
3kv9_A	397	JMJC domain-containing histone demethylation prote	88.21
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	87.79
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	87.76
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	87.11
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	86.56
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	86.51
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	86.31
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	85.63
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	85.57
3uss_A	211	Putative uncharacterized protein; cupin, three his	85.35
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	85.34
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	85.04
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	84.96
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	83.8
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	83.78
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	83.51
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	83.08
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	83.0
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	82.95
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	82.75
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	82.4
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	82.3
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	82.27
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	81.82
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	81.79
3kv5_D	488	JMJC domain-containing histone demethylation prote	81.63
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	81.3
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	80.97
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	80.64
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	80.57

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=100.00  E-value=2.2e-74  Score=567.61  Aligned_cols=314  Identities=24%  Similarity=0.367  Sum_probs=286.9

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCC------------------------------------------
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKH------------------------------------------   42 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~------------------------------------------   42 (325)
                      +.++.+++|||++|++++||++|+ |++|+|+|+|++.                                          
T Consensus        50 i~p~Gl~lPh~~~a~e~~~V~~G~-g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (466)
T 3kgl_A           50 IESKGLYLPSFFSTAKLSFVAKGE-GLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQG  128 (466)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEECE-EEEEEECTTCCCCEEECCSSCCCC-------------------------------
T ss_pred             ECCCCEeCCeeCCCCeEEEEEeCe-EEEEEecCCCcchhhcccccccccccccccccccccccccccccccccccccccc
Confidence            567899999999999999999999 9999999988541                                          


Q ss_pred             ------------CcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCC--CCcceeeeecccc-------
Q 020545           43 ------------SQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGAQ-------  101 (325)
Q Consensus        43 ------------~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~~-------  101 (325)
                                  |.++++++|++||||+||+|++||++|+|+++|+++|++|++|..|  ++.++.|||||+.       
T Consensus       129 ~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~  208 (466)
T 3kgl_A          129 QQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWI  208 (466)
T ss_dssp             ----------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTS
T ss_pred             ccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEcCCCcccccCCceeeeEecCCCccccccc
Confidence                        3466778999999999999999999999999999999999988765  6779999999986       


Q ss_pred             ---------ccccCCChhHHhhhcCCCHHHHHHHhcccC-ceeEEEecCCcCCCCcccCCCCC----------------C
Q 020545          102 ---------GILGGFSSEFTGRAYNMNENEAKILAKSQT-GVLIIKLGQDESEKIPLPHQHGN----------------A  155 (325)
Q Consensus       102 ---------s~l~~f~~~vLa~af~v~~~~~~~l~~~q~-~~~Iv~~~~~~~~~~~~~~p~~~----------------~  155 (325)
                               |+|++|++++|++||++++++++||+++|+ .+.||+++.    ++.+++|...                .
T Consensus       209 ~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~~~G~Iv~v~~----~l~~~~p~~~~~~~~~~~~glee~~c~  284 (466)
T 3kgl_A          209 EGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQG----PFSVIRPPLRSQRPQEEVNGLEETICS  284 (466)
T ss_dssp             TTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTCCSCSEEECCS----CCCCCCCCC--------------CCSS
T ss_pred             cccccccCCCccccCCHHHHHHHhCCCHHHHHHHhccccCceeEEEecC----cccccCCcccccccccccCCccccccc
Confidence                     999999999999999999999999999987 568999985    5555554321                2


Q ss_pred             CceeeeecC-CCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC
Q 020545          156 NLMVNNFAN-FPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA  234 (325)
Q Consensus       156 ~~~~~nl~~-~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g  234 (325)
                      .+.+|||.+ .++|++++.||+++.+++.+||+|+++|||+++++|+||||++|||||+|+||+||++|+++++||+++|
T Consensus       285 ~r~~~Ni~~p~~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g  364 (466)
T 3kgl_A          285 ARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNG  364 (466)
T ss_dssp             CCCEEETTCGGGEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTS
T ss_pred             eeccccccCcccCCcccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCC
Confidence            246899987 6778778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhcc
Q 020545          235 KLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENV  314 (325)
Q Consensus       235 ~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~  314 (325)
                      +++|+.+|++|||||||+|++|++++++++++|++++++++|..++|+|++++|+++|++||+++|+++++++++|++++
T Consensus       365 ~~~f~~~l~~GDV~v~P~G~~H~~~ag~e~~~~l~~f~s~np~~~~LaG~~s~~~~lP~eVla~aF~v~~~~v~~Lk~~q  444 (466)
T 3kgl_A          365 DRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNT  444 (466)
T ss_dssp             CEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESSSSCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred             cEEEEeEecCCcEEEECCCCeEEEEcCCCCEEEEEEECCCCCccccccchhhhhhhCCHHHHHHHhCcCHHHHHHHHhcc
Confidence            99999999999999999999999988989999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEecCC
Q 020545          315 ATSEILIPP  323 (325)
Q Consensus       315 ~~~~i~~~p  323 (325)
                      ++..|+.|+
T Consensus       445 ~e~~i~~~~  453 (466)
T 3kgl_A          445 IETTLTHSS  453 (466)
T ss_dssp             CCSSEEECC
T ss_pred             CccEEECCC
Confidence            998777654

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=100.00  E-value=8.2e-74  Score=563.42  Aligned_cols=315  Identities=25%  Similarity=0.397  Sum_probs=282.9

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC--------------------------------CCcceEEEEee
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK--------------------------------HSQEEIVLGLR   52 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~--------------------------------~~~~~~~~~l~   52 (325)
                      +.++.+++|||++|++|+||++|+ |++|+|.|+|.+                                +|.++++++|+
T Consensus        57 i~P~gl~~Ph~h~a~ei~yV~qG~-g~~g~v~pgc~etf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~~~~~  135 (465)
T 3qac_A           57 IEPHGLLLPSFTSAPELIYIEQGN-GITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLR  135 (465)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEECE-EEEEEECTTCCCCC------------------------------CCCCCCEEEEE
T ss_pred             EcCCcCcccEEcCCCEEEEEEECc-EEEEEecCCCCceeecchhccccccccccccccccccccccccccccccceeeec
Confidence            567899999988999999999999 999999998742                                14567788999


Q ss_pred             CCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCC--C-Ccceeeeeccc----------------------cccccCC
Q 020545           53 KGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYV--P-GEFSYFLLTGA----------------------QGILGGF  107 (325)
Q Consensus        53 ~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~--p-~~~~~f~laG~----------------------~s~l~~f  107 (325)
                      +||||+||+|++||++|+|+++|++++++|++|..|  + +.++.|||||+                      +|||++|
T Consensus       136 ~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld~~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF  215 (465)
T 3qac_A          136 EGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGF  215 (465)
T ss_dssp             TTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSCSSSCCEEESSSCCCCSCC--------------CCCCGGGGS
T ss_pred             CCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCcccccccccceeEEecCCCccccccccccccccccccccccchhhcC
Confidence            999999999999999999999999999999988765  2 67899999997                      4899999


Q ss_pred             ChhHHhhhcCCCHHHHHHHhcccCc-eeEEEecCCcCCCCcccCCCC------------------C------CCceeeee
Q 020545          108 SSEFTGRAYNMNENEAKILAKSQTG-VLIIKLGQDESEKIPLPHQHG------------------N------ANLMVNNF  162 (325)
Q Consensus       108 ~~~vLa~af~v~~~~~~~l~~~q~~-~~Iv~~~~~~~~~~~~~~p~~------------------~------~~~~~~nl  162 (325)
                      ++++|++|||+++++++||+++|++ +.|||++.    ++.+++|..                  .      ..+.++||
T Consensus       216 ~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv~~----~l~~~~p~~~~~~~~~~~~~~~~~~~nglee~~c~~~l~~ni  291 (465)
T 3qac_A          216 ETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQE----GLHVIKPPSRAWEEREQGSRGSRYLPNGVEETICSARLAVNV  291 (465)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC-C----CCC----------------------------CTTTSCCEEET
T ss_pred             CHHHHHHHhCCCHHHHHHhhhccccceeEEEecC----cccccCCcccchhhhhcccccccccCCCccccccceeccccc
Confidence            9999999999999999999998874 68999975    444333311                  0      22567899


Q ss_pred             cC-CCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEE
Q 020545          163 AN-FPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSE  241 (325)
Q Consensus       163 ~~-~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~  241 (325)
                      .. .+++++++.||+++.+++.+||+|+++|||+++++|+||||++|||||||+||+||++|+++++||+++|+++|+++
T Consensus       292 ~~p~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~  371 (465)
T 3qac_A          292 DDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEE  371 (465)
T ss_dssp             TCTTTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred             cccccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEE
Confidence            87 78888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccCCceEec
Q 020545          242 VEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILI  321 (325)
Q Consensus       242 l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i~~  321 (325)
                      |++|||||||+|++|++++|+++++|++|+++++|..++|||++++|+++|++||++||+++++++++|++++++++|+.
T Consensus       372 l~~GDVfvvP~g~~h~~~ag~e~~~~l~f~~s~np~~~~LaG~~sv~~~ip~eVla~aF~v~~e~v~~Lk~~~~e~~i~~  451 (465)
T 3qac_A          372 LSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQSLAGRTSAIRSLPIDVVSNIYQISREEAFGLKFNRPETTLFR  451 (465)
T ss_dssp             EETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEESSSSSBHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSCSEEC
T ss_pred             ecCCeEEEECCCcEEEEEcCCCCeEEEEEecCCCCcccccccchhhhhhCCHHHHHHHhCCCHHHHHHHHhccCccEEEC
Confidence            99999999999999999999889999999999999999999999999999999999999999999999999999988886


Q ss_pred             CCC
Q 020545          322 PPK  324 (325)
Q Consensus       322 ~p~  324 (325)
                      |+.
T Consensus       452 ~~~  454 (465)
T 3qac_A          452 SSG  454 (465)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            653

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=100.00  E-value=2.1e-72  Score=557.23  Aligned_cols=314  Identities=25%  Similarity=0.377  Sum_probs=283.1

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC----------------CCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK----------------HSQEEIVLGLRKGDVIPVPLGSASWWY   68 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~----------------~~~~~~~~~l~~GDv~~vP~G~~~~~~   68 (325)
                      +.++++++|||++|++|+||++|+ |++|+|+|+|.+                .|.++++++|++||||+||+|++||++
T Consensus        53 i~pggl~lPh~~~A~ei~~V~qG~-g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h~~~  131 (496)
T 3ksc_A           53 LQRNALRRPYYSNAPQEIFIQQGN-GYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMY  131 (496)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEECC-EEEEEECTTCCCC---------------CCCCCCEEEECTTEEEEECTTCEEEEE
T ss_pred             ecCCCEeCceEcCCCEEEEEEeCc-eEEEEEeCCCCccchhhhhcccccccccccchheeeccCCCCEEEECCCCcEEEE
Confidence            457899999999999999999999 999999998632                245666889999999999999999999


Q ss_pred             ecCCCCEEEEEEeecCCCCC--CCcceeeeeccc----------------------cccccCCChhHHhhhcCCCHHHHH
Q 020545           69 NNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGA----------------------QGILGGFSSEFTGRAYNMNENEAK  124 (325)
Q Consensus        69 N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~----------------------~s~l~~f~~~vLa~af~v~~~~~~  124 (325)
                      |+|+++|+++|++|++|..|  |+.++.|||||+                      +|+|++|++++|+.||+++.++++
T Consensus       132 N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~  211 (496)
T 3ksc_A          132 NDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVD  211 (496)
T ss_dssp             ECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGGCC-----------CCSGGGGSCHHHHHHHHTCCHHHHH
T ss_pred             cCCCCCEEEEEEeccCcccccCCCceeeeEecCCCccccccccccccccccccccCCCchhhcCHHHHHHHHCCCHHHHH
Confidence            99999999999999988766  788999999999                      699999999999999999999999


Q ss_pred             HHh--cc-cCceeEEEecCCcCCCCcccCCCC------------------------------------------------
Q 020545          125 ILA--KS-QTGVLIIKLGQDESEKIPLPHQHG------------------------------------------------  153 (325)
Q Consensus       125 ~l~--~~-q~~~~Iv~~~~~~~~~~~~~~p~~------------------------------------------------  153 (325)
                      ||+  +. |+.+.|||++.    ++.+++|..                                                
T Consensus       212 kl~~~~~~~~rg~IV~v~~----~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (496)
T 3ksc_A          212 RLQGRNEDEEKGAIVKVKG----GLSIISPPEKQARHQRGSRQEEDEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRG  287 (496)
T ss_dssp             HHTTTTCCTTTCSEEECSS----CCCCCCCC-------------------------------------------------
T ss_pred             HHHhhcccccCccEEEecC----cccccCCchhhhchhhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            999  34 45579999986    333222210                                                


Q ss_pred             ---------------------C---------CCceeeeecC-CCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecC
Q 020545          154 ---------------------N---------ANLMVNNFAN-FPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA  202 (325)
Q Consensus       154 ---------------------~---------~~~~~~nl~~-~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~p  202 (325)
                                           .         +.+.++||.+ .++|++++.||+++.+++.+||+|+++|||+++++|.|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~nGlee~~c~~~l~~Ni~~p~~~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~p  367 (496)
T 3ksc_A          288 EEEEEDKKERGGSQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHK  367 (496)
T ss_dssp             ----------------------------CCSSSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEET
T ss_pred             ccccccccccccccccccccccCCCccccccchhhhccccccccCCcccCCCeeEEEeCHHHCccccccceeEEEEEeeC
Confidence                                 0         1235899987 77898888899999999999999999999999999999


Q ss_pred             CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeec
Q 020545          203 NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLG  282 (325)
Q Consensus       203 g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~la  282 (325)
                      |||++|||||+|+||+||++|+++++||+++|+++|+.+|++|||||||+|++|+++|++++++|++|+++++|..++||
T Consensus       368 Ggm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~a~~e~~~~l~f~~s~np~~~~La  447 (496)
T 3ksc_A          368 NAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLA  447 (496)
T ss_dssp             TCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESSTTCCEEESS
T ss_pred             CeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEECCCCEEEEEeCCCCEEEEEEECCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             CccccccCCCHHHHHHHcCCCHHHHHHhhhccCCceEecCC
Q 020545          283 GKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP  323 (325)
Q Consensus       283 G~~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i~~~p  323 (325)
                      |++++|+++|++||++||+++.+++++|++++++..|+.||
T Consensus       448 G~~sv~~~~p~eVLa~aF~v~~~~v~~Lk~~q~e~~i~~~~  488 (496)
T 3ksc_A          448 GTSSVINNLPLDVVAATFNLQRNEARQLKSNNPFKFLVPAR  488 (496)
T ss_dssp             STTCTTTTSCHHHHHHHHTCCHHHHHHHHHSCCCSSEECCC
T ss_pred             chhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCccEEeCCC
Confidence            99999999999999999999999999999999987777655

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=100.00  E-value=7.1e-72  Score=552.83  Aligned_cols=315  Identities=25%  Similarity=0.400  Sum_probs=287.3

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC-------------------------------------------
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK-------------------------------------------   41 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~-------------------------------------------   41 (325)
                      |.++.|++||+++|++++||++|+ |++|+|.|+|++                                           
T Consensus        55 i~p~Gl~lPh~~~a~el~yV~qG~-g~~G~v~Pgcpet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (531)
T 3fz3_A           55 IQRNGLHLPSYSNAPQLIYIVQGR-GVLGAVFSGCPETFEESQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQ  133 (531)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEECE-EEEEECCTTCCCCEECCCC------------------------------------
T ss_pred             ecCCCEeCCccCCCCeEEEEEECc-EEEEEEcCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567899999988999999999999 999999999864                                           


Q ss_pred             -------------------------------C--CcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCC
Q 020545           42 -------------------------------H--SQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYV   88 (325)
Q Consensus        42 -------------------------------~--~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~   88 (325)
                                                     .  |.++++++|++|||++||+|++||+||+|+++|+++|++|++|..|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~N  213 (531)
T 3fz3_A          134 GRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHN  213 (531)
T ss_dssp             -------------------------------CCSCEESCCEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEETTCTTC
T ss_pred             cccccchhccccccccccccccccccccccccccccceeeecccCCcEEEECCCCeEEEEeCCCceEEEEEEEccccccc
Confidence                                           0  5568899999999999999999999999999999999999998877


Q ss_pred             --CCcceeeeeccc-----------------------------------------cccccCCChhHHhhhcCCCHHHHHH
Q 020545           89 --PGEFSYFLLTGA-----------------------------------------QGILGGFSSEFTGRAYNMNENEAKI  125 (325)
Q Consensus        89 --p~~~~~f~laG~-----------------------------------------~s~l~~f~~~vLa~af~v~~~~~~~  125 (325)
                        |+.++.|||||+                                         +|+|++|++++|++||+|++++++|
T Consensus       214 Qld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~k  293 (531)
T 3fz3_A          214 QLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARN  293 (531)
T ss_dssp             CSCSSCCEEESSSCCCCTTCC--------------------------------CCSSGGGGSCHHHHHHHHTSCHHHHHH
T ss_pred             cCCCccceeEEcCCCcccccccccccccccccccccccccccccccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHH
Confidence              888999999998                                         3899999999999999999999999


Q ss_pred             HhcccC-ceeEEEecCCcCCCCcccCCCCC-----------------------------------CCceeeeecC-CCCC
Q 020545          126 LAKSQT-GVLIIKLGQDESEKIPLPHQHGN-----------------------------------ANLMVNNFAN-FPAD  168 (325)
Q Consensus       126 l~~~q~-~~~Iv~~~~~~~~~~~~~~p~~~-----------------------------------~~~~~~nl~~-~~p~  168 (325)
                      |+++++ .+.|||++.    +|.+++|...                                   ..+.+|||++ ..++
T Consensus       294 Lq~~~~~rg~IVrv~~----~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nGleet~c~~rl~~Ni~~ps~~d  369 (531)
T 3fz3_A          294 LQGQNDNRNQIIQVRG----NLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQLMANGLEETFCSLRLKENIGNPERAD  369 (531)
T ss_dssp             HHTSSCCSCSEEECSS----SCCCSCCC------------------------------CGGGTGGGCCCEEECCCGGGCS
T ss_pred             HhcccccCceEEEecC----CCcccCCchhhhhhhhcccccccccccccccccccCCCCcccccccceeeeccCCcccCC
Confidence            998887 468999986    5555544210                                   1245899996 6777


Q ss_pred             eeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEE
Q 020545          169 FCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLL  248 (325)
Q Consensus       169 ~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~  248 (325)
                      ++++.||+++.+++.+||+|+++|||+++++|.||||++|||||+|+||+||++|+++++|++++|+++++.+|++|||+
T Consensus       370 ~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~  449 (531)
T 3fz3_A          370 IFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF  449 (531)
T ss_dssp             EEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             cccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence            88888999999999999999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             EECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccCCceEecCCC
Q 020545          249 VVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPK  324 (325)
Q Consensus       249 vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i~~~p~  324 (325)
                      |||+|++|++++++++++|++|.++++|++.+|||++++|+++|++||+++|+++++++++|++++++++||.||.
T Consensus       450 v~P~G~~H~~~ag~e~l~flaF~ss~np~~~~LaG~~svf~~lP~eVLa~aF~v~~e~v~kLk~~~~es~i~~pp~  525 (531)
T 3fz3_A          450 IVPQNHGVIQQAGNQGFEYFAFKTEENAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQETIALSSSQ  525 (531)
T ss_dssp             EECTTCEEEEEEEEEEEEEEEEESSTTCCEEESSSTTCHHHHSCHHHHHHHHTCCHHHHHHHHHSCCCSSEECC--
T ss_pred             EECCCCeEEEecCCCCEEEEEEecCCCCcceeccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhcCCCceEECCCC
Confidence            9999999999888788999988888999999999999999999999999999999999999999999999999885

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=100.00  E-value=9.8e-70  Score=536.39  Aligned_cols=313  Identities=24%  Similarity=0.392  Sum_probs=277.5

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC----------------CCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK----------------HSQEEIVLGLRKGDVIPVPLGSASWWY   68 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~----------------~~~~~~~~~l~~GDv~~vP~G~~~~~~   68 (325)
                      |.++++++|||+++++|+||++|+ |++|+|+|+|.+                .|.++++++|++||||+||+|++||++
T Consensus        70 i~pggl~~Ph~h~a~ei~yVl~G~-g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~iPaG~~H~~~  148 (459)
T 2e9q_A           70 IRPKGLLLPGFSNAPKLIFVAQGF-GIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMY  148 (459)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEECE-EEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEEEECTTCCEEEE
T ss_pred             EcCCCEecceecCCceEEEEEeeE-EEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEEEECCCCCEEEE
Confidence            567899999999999999999999 999999998732                122345789999999999999999999


Q ss_pred             ecCCCCEEEEEEeecCCCCC--CCcceeeeecccc------------------------ccccCCChhHHhhhcCCCHHH
Q 020545           69 NNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGAQ------------------------GILGGFSSEFTGRAYNMNENE  122 (325)
Q Consensus        69 N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~~------------------------s~l~~f~~~vLa~af~v~~~~  122 (325)
                      |+|+++|+++|++|++|..|  ++.++.|||||+.                        +||++||++||++||+|+.++
T Consensus       149 N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~  228 (459)
T 2e9q_A          149 NRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGL  228 (459)
T ss_dssp             ECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTCC------------CCCCTTTTSCHHHHHHHHTCCHHH
T ss_pred             eCCCCCEEEEEEecCCCcccccCcccceeeccCCccccchhhhccccccccccccccccchhhcCCHHHHHhhcCCCHHH
Confidence            99999999999999887766  4668999999863                        899999999999999999999


Q ss_pred             HHHHhcccCc-eeEEEecCCcCCCCcccCCC-------------------CC------CCceeeeecC-CCCCeeccCCe
Q 020545          123 AKILAKSQTG-VLIIKLGQDESEKIPLPHQH-------------------GN------ANLMVNNFAN-FPADFCVKKAG  175 (325)
Q Consensus       123 ~~~l~~~q~~-~~Iv~~~~~~~~~~~~~~p~-------------------~~------~~~~~~nl~~-~~p~~~~~~gG  175 (325)
                      ++||++++++ ++||++++    +++++.|.                   ..      ..++.||+.. ..++++++.||
T Consensus       229 v~kL~~~~~~~G~Iv~~~~----~l~~~~P~~~~~e~~~~~~~~~~~~~~~g~~e~~~~~~l~~n~~~~~~~~~~~~~gG  304 (459)
T 2e9q_A          229 VRKLKGEDDERDRIVQVDE----DFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFNPRGG  304 (459)
T ss_dssp             HHHHHTTTCCSTTEEECCS----SCCTTTTC------------------------CGGGSCCEEECSTTSCCSEEETTTE
T ss_pred             HHhhhhcccCCccEEEeCC----cccccCCccchhhhcccccccccccccCCccccccceeeeecccccccCCcccCCCe
Confidence            9999998874 59999885    23222220                   00      1246677775 66777778899


Q ss_pred             EEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE
Q 020545          176 MVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV  255 (325)
Q Consensus       176 ~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~  255 (325)
                      +++.+++.+||+|+++|||+++++|.||||++|||||+|+||.||++|+++++|++++|+++|+.+|++|||+|||+|++
T Consensus       305 ~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G~~  384 (459)
T 2e9q_A          305 RISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFV  384 (459)
T ss_dssp             EEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCE
T ss_pred             eEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccCCceEecCC
Q 020545          256 VAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP  323 (325)
Q Consensus       256 h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i~~~p  323 (325)
                      |++.|++++++|++++++++|+..+|||+++||+++|++||+++|+++++++++|++++++..| +||
T Consensus       385 H~~~ng~~~~~~l~~~~s~~~~~~~laG~~s~~~~~p~~Vla~af~v~~~~v~~l~~~~~e~~i-~~~  451 (459)
T 2e9q_A          385 VIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEMRV-LSP  451 (459)
T ss_dssp             EEEEEEEEEEEEEEEESSSSCCEEESSSSSSHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSCSE-ECS
T ss_pred             EEEEeCCCCeEEEEEecCCCCcceeecchhHHHHhCCHHHHHHHHCcCHHHHHHHHhcCCccEE-eCC
Confidence            9998888889999999999999999999999999999999999999999999999999987665 454

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=100.00  E-value=7e-68  Score=517.71  Aligned_cols=306  Identities=18%  Similarity=0.281  Sum_probs=267.2

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~~   83 (325)
                      |+++++++|||++|+||+||++|+ |++|+|++++      .++++|++||||+||+|++||++|+|+ ++|+++|+.++
T Consensus        51 l~p~gl~~Phh~~A~ei~yV~~G~-g~~g~V~~~~------~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~  123 (418)
T 3s7i_A           51 AKPNTLVLPKHADADNILVIQQGQ-ATVTVANGNN------RKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMP  123 (418)
T ss_dssp             ECTTEEEEEEEESEEEEEEEEESE-EEEEEECSSC------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEE
T ss_pred             ecCCceeeeeeCCCCeEEEEEEee-EEEEEEecCC------EEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecC
Confidence            678999999999999999999999 9999999985      558999999999999999999999875 58999998875


Q ss_pred             CCCCCCCcceeeeecccc---ccccCCChhHHhhhcCCCHHHHHHHhccc---------------------CceeEEEec
Q 020545           84 SRAYVPGEFSYFLLTGAQ---GILGGFSSEFTGRAYNMNENEAKILAKSQ---------------------TGVLIIKLG  139 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~~---s~l~~f~~~vLa~af~v~~~~~~~l~~~q---------------------~~~~Iv~~~  139 (325)
                      +  ++||.++.|+|+|+.   ++|++||++||++||+++++++++|+..+                     ..+.|++++
T Consensus       124 s--~~pg~~~~f~laG~~~~~s~~~gf~~evLa~af~v~~~~v~kl~~~~~~~~~~~~~~~~~~~~~~~~q~~g~Iv~~~  201 (418)
T 3s7i_A          124 V--NTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNEGVIVKVS  201 (418)
T ss_dssp             S--SBTTBCCEECSSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCC--------------------CCCSEEECC
T ss_pred             c--CCCCccceeeccCCcchhHHhhcCCHHHHHHHHCcCHHHHHhhhcccccccccccccccccccccccccCCceEEcC
Confidence            4  369999999999985   79999999999999999999999999542                     346899987


Q ss_pred             CCcCCCCcc----cCCCC-C---CCceeeeecCCCCCeeccCCeEEEEEcCCCC-cccccccceEEEEEecCCCccCCee
Q 020545          140 QDESEKIPL----PHQHG-N---ANLMVNNFANFPADFCVKKAGMVTSFTGSNF-PFLEQVGLSCTILKLDANAMLSPTY  210 (325)
Q Consensus       140 ~~~~~~~~~----~~p~~-~---~~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~-p~L~~~gis~~~v~l~pg~~~~Ph~  210 (325)
                      .++++.+..    ..+.+ .   ..+++|||.+.+|++.+ .+|+++.+++.+| |+|+|+||++++++|+||||++|||
T Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~nl~~~~p~~~n-~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~  280 (418)
T 3s7i_A          202 KEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSN-NFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHF  280 (418)
T ss_dssp             HHHHHHHHTTCBC--------CTTCCCCEETTCSCCSEEE-TTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEE
T ss_pred             hhhhhhccccccccCCCCcCcccCCCcccccccCCCceeC-CCCeEEEechHHcchhhccCCeeEEEEEecCCceeCcee
Confidence            643211110    00111 1   14789999999998765 6899999999999 9999999999999999999999999


Q ss_pred             cCCCCEEEEEEeCcEEEEEEeCCCc------------------------eEEeEEecCccEEEECCccEEEEEcCCCCEE
Q 020545          211 TADSVQVFYVVKGSGKAQIVGLNAK------------------------LVLDSEVEAGQLLVVPRCFVVAIIAGPEGIE  266 (325)
Q Consensus       211 h~~A~ei~yV~~G~~~~~vv~p~g~------------------------~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~  266 (325)
                      ||||+||+||++|+++++|++++|.                        ++++.+|++|||++||+|++||++++. +++
T Consensus       281 ~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~-~l~  359 (418)
T 3s7i_A          281 NSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS-ELH  359 (418)
T ss_dssp             ESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS-CEE
T ss_pred             cCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC-CEE
Confidence            9999999999999999999999763                        578899999999999999999988854 499


Q ss_pred             EEEEeCCC-CCceeeecCc-cccccCCCHHHHHHHcCCCHHHHHHhhhccCCceEec
Q 020545          267 CFSITTST-RPALGKLGGK-QSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILI  321 (325)
Q Consensus       267 ~~~~~~s~-~p~~~~laG~-~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i~~  321 (325)
                      |++|.+++ +|+.++|||+ +++|++||++||++||+++.+++++|+++|+++.|+.
T Consensus       360 ~v~f~~~~~~~~~~~LAG~~~sv~~~~~~evla~af~v~~~~v~~L~~~q~e~~~~~  416 (418)
T 3s7i_A          360 LLGFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKNQKESHFVS  416 (418)
T ss_dssp             EEEEEESCTTCCEEESSSSTTBHHHHSCHHHHHHHSSSCHHHHHHHHHTCCSCSEEE
T ss_pred             EEEEEcCCCCCcceEccCchhhhhhcCCHHHHHHHhCCCHHHHHHHHhcCCcceeec
Confidence            99887654 8999999998 5999999999999999999999999999999876653

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=100.00  E-value=7.4e-66  Score=511.12  Aligned_cols=314  Identities=27%  Similarity=0.419  Sum_probs=275.9

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC-----------------CCcceEEEEeeCCcEEEeCCCCeEEE
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK-----------------HSQEEIVLGLRKGDVIPVPLGSASWW   67 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~-----------------~~~~~~~~~l~~GDv~~vP~G~~~~~   67 (325)
                      |.++.+++|||+++++|+||++|+ |++|+|+|+|.+                 .|.++++++|++||||+||+|++||+
T Consensus        55 l~Pggl~~Ph~~~a~ei~yV~~G~-g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~h~~  133 (476)
T 1fxz_A           55 LNRNALRRPSYTNGPQEIYIQQGK-GIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWM  133 (476)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEECC-EEEEEECTTCCCC------------------CCCCEEEECTTEEEEECTTCEEEE
T ss_pred             EcCCCEecceecCCceEEEEEecE-EEEEEEcCCCcchhhccccccccccccccccccceEEEEeCCCEEEECCCCcEEE
Confidence            567999999999999999999999 999999999842                 12344689999999999999999999


Q ss_pred             EecCCCCEEEEEEeecCCCCC--CCcceeeeeccc------------------------------cccccCCChhHHhhh
Q 020545           68 YNNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGA------------------------------QGILGGFSSEFTGRA  115 (325)
Q Consensus        68 ~N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~------------------------------~s~l~~f~~~vLa~a  115 (325)
                      +|+|+++|+++|++|+++..|  ++.++.|||||+                              .+||++|+++||++|
T Consensus       134 ~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~a  213 (476)
T 1fxz_A          134 YNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHA  213 (476)
T ss_dssp             EECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC-------------------CCCGGGGSCHHHHHHH
T ss_pred             EeCCCCCEEEEEEecCCCcccccCCccceeeccCCccccccccccccccccccccccccccccccchhhhcCCHHHHHhh
Confidence            999999999999999988877  467899999985                              389999999999999


Q ss_pred             cCCCHHHHHHHhcccC---ceeEEEecCCcCCCCcccCC---------------------C-------------------
Q 020545          116 YNMNENEAKILAKSQT---GVLIIKLGQDESEKIPLPHQ---------------------H-------------------  152 (325)
Q Consensus       116 f~v~~~~~~~l~~~q~---~~~Iv~~~~~~~~~~~~~~p---------------------~-------------------  152 (325)
                      |+|++++++||++.++   .++||+++.    ++.++.|                     .                   
T Consensus       214 f~v~~~~~~kl~~~~~~~~~g~Iv~v~~----~l~~~~P~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (476)
T 1fxz_A          214 FSVDKQIAKNLQGENEGEDKGAIVTVKG----GLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSR  289 (476)
T ss_dssp             HTCCHHHHHHHSCC-----CCSEEECSS----CCCCCCC-----------------------------------------
T ss_pred             hCCCHHHHHhhhccccccccccEEEeCC----cccccCCccchhhhccccchhhhhcccccccccccccccccccccccc
Confidence            9999999999999887   579999885    2211111                     0                   


Q ss_pred             -CC------CCceeeeecC-CCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCc
Q 020545          153 -GN------ANLMVNNFAN-FPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGS  224 (325)
Q Consensus       153 -~~------~~~~~~nl~~-~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~  224 (325)
                       ..      ..++.+|+.+ ..++++++.||+++.+++.+||+|+++++++++++|.||||+.|||||+|+||.||++|+
T Consensus       290 ~ng~~e~~~~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~  369 (476)
T 1fxz_A          290 RNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGR  369 (476)
T ss_dssp             -------CTTCCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESE
T ss_pred             cCCccccccceeeeccccccccCCcccCCCeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCE
Confidence             00      1236677776 567777889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCH
Q 020545          225 GKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNE  304 (325)
Q Consensus       225 ~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~  304 (325)
                      ++++|++++|+++++.+|++|||++||+|++|++.|+++++++++++++++|...+|+|++++|+++|++||+++|++++
T Consensus       370 ~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~~p~~~~laG~~s~~~~~p~~Vla~af~~~~  449 (476)
T 1fxz_A          370 ALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKS  449 (476)
T ss_dssp             EEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSSSCCEEESSSTTCTGGGSCHHHHHHHHTCCH
T ss_pred             EEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCCCCceeEccchhHHHHhCCHHHHHHHhCcCH
Confidence            99999999998889899999999999999999988887889999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCceEecCC
Q 020545          305 EFLKFFKENVATSEILIPP  323 (325)
Q Consensus       305 ~~v~~l~~~~~~~~i~~~p  323 (325)
                      +++++|++++++..|+.||
T Consensus       450 ~~v~~l~~~~~e~~i~~p~  468 (476)
T 1fxz_A          450 QQARQIKNNNPFKFLVPPQ  468 (476)
T ss_dssp             HHHHHHHHSCCCSSEECCC
T ss_pred             HHHHHHHhhCCCcEEeCCc
Confidence            9999999998876655443

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=100.00  E-value=3e-66  Score=510.77  Aligned_cols=309  Identities=18%  Similarity=0.290  Sum_probs=268.0

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC-CCCEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG-SSDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g-~~~l~~~~~~~~   83 (325)
                      |.++.+..|||++++||+||++|+ |++++++++|     . .++.|++||+++||+|++||++|+| +++++++|++++
T Consensus        93 l~Pgg~~~pHh~~a~E~~yVl~G~-g~v~~v~~~~-----~-~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~  165 (445)
T 2cav_A           93 SKPNTLLLPHHSDSDLLVLVLEGQ-AILVLVNPDG-----R-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAIT  165 (445)
T ss_dssp             ECSSEEEEEEEESSEEEEEEEESE-EEEEEEETTE-----E-EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEEC
T ss_pred             ECCCcCccCcCCCCceEEEEEeCE-EEEEEEeCCC-----C-EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEecc
Confidence            567889999999999999999999 9999999885     4 5899999999999999999999998 789999999985


Q ss_pred             CCCCCCCcceeeeecccc---ccccCCChhHHhhhcCCCHHHHHHHhc-ccCceeEEEecCCcCCCCccc----CCCC-C
Q 020545           84 SRAYVPGEFSYFLLTGAQ---GILGGFSSEFTGRAYNMNENEAKILAK-SQTGVLIIKLGQDESEKIPLP----HQHG-N  154 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~~---s~l~~f~~~vLa~af~v~~~~~~~l~~-~q~~~~Iv~~~~~~~~~~~~~----~p~~-~  154 (325)
                      +  ++|+.++.|+|+|+.   +||++||++||+++|+++++++++|++ +|++++||+++.++.+.+..-    .+.+ .
T Consensus       166 ~--~~pg~~~~F~laG~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~  243 (445)
T 2cav_A          166 F--RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKTLS  243 (445)
T ss_dssp             C--SSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECCCC------------------
T ss_pred             C--CCCCceeeeeccCCCchhhhhhcCCHHHHHHHhCCCHHHHHhhhcccCCCCcEEEeCCcchhhhcccccccCCCCCC
Confidence            4  478889999999984   999999999999999999999999995 445679999987543222110    1111 2


Q ss_pred             CCceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC
Q 020545          155 ANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA  234 (325)
Q Consensus       155 ~~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g  234 (325)
                      ...++|||.+++|++. +.+|+++.+++.+||+|+++|||+++++|.||||++|||||||+||+||++|+++++|++++|
T Consensus       244 ~~~~~~~l~~~~p~~~-~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~  322 (445)
T 2cav_A          244 SQDKPFNLRSRDPIYS-NNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ  322 (445)
T ss_dssp             --CCCEETTSSCCSEE-SSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC--
T ss_pred             CcccceeccccCCCcc-CCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCC
Confidence            3567999999999876 568999999999999999999999999999999999999999999999999999999999985


Q ss_pred             c--------e--EEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCC-CCceeeecC-ccccccCCCHHHHHHHcCC
Q 020545          235 K--------L--VLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTST-RPALGKLGG-KQSVMNGFSASVVQLALNV  302 (325)
Q Consensus       235 ~--------~--~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~-~p~~~~laG-~~svl~~~~~evla~af~v  302 (325)
                      .        +  +++.+|++|||+|||+|++|++.|. +++.|++|.+++ ++..++||| ++++|+++|++||++||++
T Consensus       323 ~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~-~~~~~v~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~v  401 (445)
T 2cav_A          323 QQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA-SDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPG  401 (445)
T ss_dssp             ---------CCEEEEEEECTTCEEEECTTCCEEEEES-SSEEEEEEEESCTTCCEEESSSSTTBSGGGSCHHHHHHHSSS
T ss_pred             cccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC-CCeEEEEEEccCCCCCcEEcccchhhhhhhCCHHHHHHHHCc
Confidence            2        4  7999999999999999999999988 679999987654 888999999 8999999999999999999


Q ss_pred             CHHHHHHhhhccCCceEecCCC
Q 020545          303 NEEFLKFFKENVATSEILIPPK  324 (325)
Q Consensus       303 ~~~~v~~l~~~~~~~~i~~~p~  324 (325)
                      +++++++|+++++++.|+.||+
T Consensus       402 ~~~~v~~l~~~~~e~~~~~~~~  423 (445)
T 2cav_A          402 SGEEVEELLENQKESYFVDGQP  423 (445)
T ss_dssp             CHHHHHHHHHHCCSCSEEECC-
T ss_pred             CHHHHHHHHhcCCccEEeCCch
Confidence            9999999999999888877753

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=100.00  E-value=8.2e-65  Score=504.87  Aligned_cols=313  Identities=25%  Similarity=0.393  Sum_probs=274.7

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCC------------------------------CcceEEEEeeCC
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKH------------------------------SQEEIVLGLRKG   54 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~------------------------------~~~~~~~~l~~G   54 (325)
                      |.++.+++|||+++++|+||++|+ |++|+|+|+|++.                              |.++++++|++|
T Consensus        55 i~p~gl~lPh~~~a~~~~yV~~G~-g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v~~G  133 (510)
T 3c3v_A           55 LRRNALRRPFYSNAPQEIFIQQGR-GYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEG  133 (510)
T ss_dssp             ECTTEEEEEEECSSCEEEEEEECC-EEEEEECTTCCCCEEEECCC--------------------CEEEEESCCEEECTT
T ss_pred             ECCCCCccceecCCCeEEEEEeCE-EEEEEEeCCCccccccccccccccccccccccccccccccccccccceEEEecCC
Confidence            568899999999999999999999 9999999987421                              123456899999


Q ss_pred             cEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCC--CCcceeeeeccc--------------------------------
Q 020545           55 DVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGA--------------------------------  100 (325)
Q Consensus        55 Dv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~--------------------------------  100 (325)
                      |||+||+|++||++|+|+++|+++|++|++|..|  +..++.|||+|+                                
T Consensus       134 Dvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (510)
T 3c3v_A          134 DLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPR  213 (510)
T ss_dssp             EEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSCCCCEESSCCCCCTTGGGCC----------------------
T ss_pred             CEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccccceeEecCCcccccchhhhcccccccccccccccccccccc
Confidence            9999999999999999999999999999987665  244789999983                                


Q ss_pred             --------------------------cccccCCChhHHhhhcCCC-HHHHHHHhcccC---ceeEEEecCCcCCCCcccC
Q 020545          101 --------------------------QGILGGFSSEFTGRAYNMN-ENEAKILAKSQT---GVLIIKLGQDESEKIPLPH  150 (325)
Q Consensus       101 --------------------------~s~l~~f~~~vLa~af~v~-~~~~~~l~~~q~---~~~Iv~~~~~~~~~~~~~~  150 (325)
                                                .+||+||++++|++||+|+ ++++++|++.++   .++||+++.    ++.+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La~af~v~~~~~~~~l~~~~~~~~~g~Iv~v~~----~l~~~~  289 (510)
T 3c3v_A          214 QEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLAQAFQVDDRQIVQNLRGENESEEQGAIVTVRG----GLRILS  289 (510)
T ss_dssp             --------------------------CCTGGGSCHHHHHHHHTCCCHHHHHHHTTTTCCTTSCSEEECTT----CCCCCC
T ss_pred             ccccccccccccccccccccccccccccceecCCHHHHHHHhCCCHHHHHHHhhccccccccccEEEeCC----cccccC
Confidence                                      3799999999999999999 999999998887   569999874    222221


Q ss_pred             CC---------------------------------CC------CCceeeeecC-CCCCeeccCCeEEEEEcCCCCccccc
Q 020545          151 QH---------------------------------GN------ANLMVNNFAN-FPADFCVKKAGMVTSFTGSNFPFLEQ  190 (325)
Q Consensus       151 p~---------------------------------~~------~~~~~~nl~~-~~p~~~~~~gG~~~~~~~~~~p~L~~  190 (325)
                      |.                                 ..      ..++.+|+.. ..++++++.||+++.+++.+||+|++
T Consensus       290 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~c~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~fP~L~~  369 (510)
T 3c3v_A          290 PDRKRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRW  369 (510)
T ss_dssp             C-----------------------------------CTTTTGGGCCCEEECSSCSCCSEEETTTEEEEEECTTTSTTHHH
T ss_pred             CchhccccchhhhhhhhccccccccccccccccccCCccccccceeeeeccCccccCCcccCCCeEEEEeccccCccccc
Confidence            10                                 00      1235677776 56777888999999999999999999


Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      ++|++++++|.||+|+.|||||+|+||.||++|+++++|++++|+++++.+|++|||++||+|++|++.|++++++++++
T Consensus       370 l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~Ng~e~l~~l~f  449 (510)
T 3c3v_A          370 LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAF  449 (510)
T ss_dssp             HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEE
T ss_pred             ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEeCCCCEEEEEE
Confidence            99999999999999999999999999999999999999999998889989999999999999999998888788999999


Q ss_pred             eCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccCCceEecCC
Q 020545          271 TTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPP  323 (325)
Q Consensus       271 ~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i~~~p  323 (325)
                      +++++|...+|+|+++||+++|++||+++|+++++++++|++++++.. |+||
T Consensus       450 ~~s~~p~~~~LaG~~svf~~lp~eVla~aF~v~~e~v~~L~~~~~e~~-i~~p  501 (510)
T 3c3v_A          450 KTDSRPSIANLAGENSVIDNLPEEVVANSYGLPREQARQLKNNNPFKF-FVPP  501 (510)
T ss_dssp             ESSSSCCEEESSSTTSTTTTSCHHHHHHHHTCCHHHHHHHHHSCCCSS-EECC
T ss_pred             ECCCCcceeecccHhHHHHhCCHHHHHHHHCcCHHHHHHHHhhCCCcE-EECC
Confidence            999999999999999999999999999999999999999999988755 5554

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=100.00  E-value=3.7e-65  Score=499.84  Aligned_cols=308  Identities=15%  Similarity=0.272  Sum_probs=269.8

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC-CCCEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG-SSDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g-~~~l~~~~~~~~   83 (325)
                      |.+..++.|||++++||+||++|+ |++++|++++      ..++.|++||+|+||+|.+||++|+| +++|++++++++
T Consensus        56 l~PGg~~~pHh~~a~E~~yVl~G~-g~v~~v~~~~------~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~  128 (416)
T 1uij_A           56 SKPNTILLPHHADADFLLFVLSGR-AILTLVNNDD------RDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIP  128 (416)
T ss_dssp             ECTTEEEEEEEESEEEEEEEEESC-EEEEEECSSC------EEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEE
T ss_pred             eccCcCcccccCCCceEEEEEeeE-EEEEEEECCC------CeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEecc
Confidence            567899999999999999999999 9999999864      44799999999999999999999995 899999999975


Q ss_pred             CCCCCCCcceeeeecccc---ccccCCChhHHhhhcCCCHHHHHHHh-ccc-----CceeEEEecCCcCCCCccc----C
Q 020545           84 SRAYVPGEFSYFLLTGAQ---GILGGFSSEFTGRAYNMNENEAKILA-KSQ-----TGVLIIKLGQDESEKIPLP----H  150 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~~---s~l~~f~~~vLa~af~v~~~~~~~l~-~~q-----~~~~Iv~~~~~~~~~~~~~----~  150 (325)
                      +  ++|+.+.+|+|+|+.   +||++||++||++||+++++++++|+ ++|     ++++|+++++++.+.+...    .
T Consensus       129 ~--~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~  206 (416)
T 1uij_A          129 V--NKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSS  206 (416)
T ss_dssp             S--SBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCTTCGGGSBSSSEEECCHHHHHHHTSSCBCCC
T ss_pred             C--CCCCcceeeeecCCcccchhhhcCCHHHHHHHhCcCHHHHHhhhhccccccccCcceEEEeCCcccchhhhcccccC
Confidence            4  468889999999974   69999999999999999999999999 666     3479999875332111100    1


Q ss_pred             C-CCCCCceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEE
Q 020545          151 Q-HGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQI  229 (325)
Q Consensus       151 p-~~~~~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~v  229 (325)
                      + ......++|||.+..|.+.+ .+|+++.+++.+||+|+++|+++++++|.||||++|||||+|+||.||++|+++++|
T Consensus       207 ~~g~~~~~~~~~l~~~~p~~~~-~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~  285 (416)
T 1uij_A          207 RKTISSEDEPFNLRSRNPIYSN-NFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIEL  285 (416)
T ss_dssp             GGGGGCSSSCEETTSSCCSEEC-SSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEE
T ss_pred             CCCCCCcccceeccccCCCccC-CCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEE
Confidence            1 11245789999998887765 689999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCc-------------eEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCC-CCceeeecC-ccccccCCCHH
Q 020545          230 VGLNAK-------------LVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTST-RPALGKLGG-KQSVMNGFSAS  294 (325)
Q Consensus       230 v~p~g~-------------~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~-~p~~~~laG-~~svl~~~~~e  294 (325)
                      ++++|.             ++++.+|++|||+|||+|++||+.|. ++++++++++++ ++..++||| .+++|+++|++
T Consensus       286 v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~-~~~~~l~f~~~~~~~~~~~laG~~~sv~~~~p~~  364 (416)
T 1uij_A          286 VGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT-SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQ  364 (416)
T ss_dssp             EEEC------------CCEEEEEEEEETTCEEEECTTCCEEEEES-SSEEEEEEEETCTTCCEEESSSSTTBSGGGSCHH
T ss_pred             EcCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC-CCeEEEEEEcCCCCCcceecccchhhHHHhCCHH
Confidence            999872             58888999999999999999999888 789999999775 899999999 79999999999


Q ss_pred             HHHHHcCCCHHHHHHhhhccCCceEecCC
Q 020545          295 VVQLALNVNEEFLKFFKENVATSEILIPP  323 (325)
Q Consensus       295 vla~af~v~~~~v~~l~~~~~~~~i~~~p  323 (325)
                      ||+++|+++++++++|+++++++.|+.||
T Consensus       365 vla~af~~~~~~v~~l~~~~~~~~~~~~~  393 (416)
T 1uij_A          365 VQELAFPGSAQDVERLLKKQRESYFVDAQ  393 (416)
T ss_dssp             HHHHHSSSCHHHHHHHTTSCCSCSEEEC-
T ss_pred             HHHHHHCcCHHHHHHHHhcCCccEEECCc
Confidence            99999999999999999999887777665

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=100.00  E-value=8.2e-65  Score=499.35  Aligned_cols=308  Identities=17%  Similarity=0.292  Sum_probs=270.0

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC-CCCEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG-SSDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g-~~~l~~~~~~~~   83 (325)
                      |.+..++.|||++++||+||++|+ |+++++++++      ..++.|++||||+||+|++||++|+| +++|+++|++++
T Consensus        68 l~PGg~~~pHh~~a~Ei~yVl~G~-g~v~~v~~~~------~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~  140 (434)
T 2ea7_A           68 SKPNTLLLPHHADADFLLVVLNGT-AVLTLVNPDS------RDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIP  140 (434)
T ss_dssp             ECTTEEEEEEEESEEEEEEEEESE-EEEEEECSSC------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEE
T ss_pred             ecCCcCccCccCCCceEEEEEecE-EEEEEEeCCC------CEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecC
Confidence            568899999999999999999999 9999999875      44799999999999999999999998 789999999975


Q ss_pred             CCCCCCCcceeeeeccc---cccccCCChhHHhhhcCCCHHHHHHHh-ccc----------CceeEEEecCCcCCCCc--
Q 020545           84 SRAYVPGEFSYFLLTGA---QGILGGFSSEFTGRAYNMNENEAKILA-KSQ----------TGVLIIKLGQDESEKIP--  147 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~---~s~l~~f~~~vLa~af~v~~~~~~~l~-~~q----------~~~~Iv~~~~~~~~~~~--  147 (325)
                      +  ++|+.+.+|+|+|+   .+||++||++||++||+++++++++|+ +.+          ++++|++++.++.+.+.  
T Consensus       141 s--~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~~~~~  218 (434)
T 2ea7_A          141 V--NNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQELMKH  218 (434)
T ss_dssp             S--SBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCC---------CCCSSSEEECCHHHHHHHHTT
T ss_pred             C--CCCCceeeeeecCCcchhhhhhcCCHHHHHHHhCCCHHHHHhhhhcccccccccccccccceEEECCcccChhhccc
Confidence            4  46788899999997   379999999999999999999999999 654          45799998664321111  


Q ss_pred             --ccCCC-CCCCceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCc
Q 020545          148 --LPHQH-GNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGS  224 (325)
Q Consensus       148 --~~~p~-~~~~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~  224 (325)
                        ...+. .....++|||.+.+|++. +.||+++++++.+||+|+++|+++++++|.||||++|||||+|+||.||++|+
T Consensus       219 ~~~~~~~g~~~~~~~~~l~~~~p~~~-~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~  297 (434)
T 2ea7_A          219 AKSSSRKELSSQDEPFNLRNSKPIYS-NKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGE  297 (434)
T ss_dssp             SBCCCSSCTTCSSSCEETTSSCCSEE-ETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESC
T ss_pred             ccccCCCCCCCcccceeeccCCCcee-CCCcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeE
Confidence              01111 124578999999999876 46899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCC----------c--eEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCC-CCceeeecC-ccccccC
Q 020545          225 GKAQIVGLNA----------K--LVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTST-RPALGKLGG-KQSVMNG  290 (325)
Q Consensus       225 ~~~~vv~p~g----------~--~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~-~p~~~~laG-~~svl~~  290 (325)
                      ++++|++++|          +  ++++.+|++|||+|||+|++|++.|. +++.+++|++++ +++.++||| .+++|++
T Consensus       298 ~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~-~~~~~v~f~~~~~~~~~~~laG~~~sv~~~  376 (434)
T 2ea7_A          298 AKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT-SNLNFFAFGINAENNRRNFLAGGKDNVMSE  376 (434)
T ss_dssp             EEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES-SSEEEEEEEETCTTCCEEESSSSTTBGGGG
T ss_pred             EEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC-CCeEEEEEECCCCCCCceecccchhhhhhh
Confidence            9999999975          2  38888999999999999999999888 679999987665 788999999 8999999


Q ss_pred             CCHHHHHHHcCCCHHHHHHhhhccCCceEecCC
Q 020545          291 FSASVVQLALNVNEEFLKFFKENVATSEILIPP  323 (325)
Q Consensus       291 ~~~evla~af~v~~~~v~~l~~~~~~~~i~~~p  323 (325)
                      +|++||+++|+++++++++|+++++++.|+.++
T Consensus       377 ~p~~vla~af~v~~~~v~~l~~~~~e~~~~~~~  409 (434)
T 2ea7_A          377 IPTEVLEVSFPASGKKVEKLIKKQSESHFVDAQ  409 (434)
T ss_dssp             SCHHHHHHHSSSCHHHHHHHHTTCCSCSEEECC
T ss_pred             CCHHHHHHHHCcCHHHHHHHHhcCCccEEECCC
Confidence            999999999999999999999999888777653

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=100.00  E-value=1.6e-61  Score=470.05  Aligned_cols=297  Identities=14%  Similarity=0.250  Sum_probs=253.2

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcE------EEeCCCCeEEEEecC-CCCEEE
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDV------IPVPLGSASWWYNNG-SSDVVI   77 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv------~~vP~G~~~~~~N~g-~~~l~~   77 (325)
                      |+++++++|||++++||+||++|+ |++++|+++|     ++ ++.|++||+      |+||+|++||++|+| ++++++
T Consensus        59 l~pgg~~~ph~~~a~ei~yVl~G~-~~v~~v~~~~-----~~-~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~  131 (397)
T 2phl_A           59 SKPETLLLPQQADAELLLVVRSGS-AILVLVKPDD-----RR-EYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRI  131 (397)
T ss_dssp             ECSSEEEEEEEESEEEEEEEEESE-EEEEEEETTT-----EE-EEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEE
T ss_pred             ECCCcCccCEecCCCeEEEEEeee-EEEEEEeCCC-----cE-EEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEE
Confidence            678999999999999999999999 9999999986     44 799999999      999999999999999 679999


Q ss_pred             EEEeecCCCCCCCcceeeeeccc---cccccCCChhHHhhhcCCCHHHHHHHh-ccc--CceeEEEecCCcCCCCcccCC
Q 020545           78 VFVGETSRAYVPGEFSYFLLTGA---QGILGGFSSEFTGRAYNMNENEAKILA-KSQ--TGVLIIKLGQDESEKIPLPHQ  151 (325)
Q Consensus        78 ~~~~~~~~~~~p~~~~~f~laG~---~s~l~~f~~~vLa~af~v~~~~~~~l~-~~q--~~~~Iv~~~~~~~~~~~~~~p  151 (325)
                      +|++++++.  | .+.+|+|+|+   ++||++||++||++||+++++++++|+ +++  ++++|++++.++.+.+.... 
T Consensus       132 i~~~~~~~~--~-~~~~f~L~G~~~~~s~~~~~~~~vLa~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~~~~~~~~~~~-  207 (397)
T 2phl_A          132 IQLAMPVNN--P-QIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKHA-  207 (397)
T ss_dssp             EEEEEESSS--S-SCCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHHHHHHHH-
T ss_pred             EEeecCCCC--c-cceeeeccCCCchhHHhhcCCHHHHHHHhCCCHHHHHhhhhcccccccCceEEcCcccchhhhccC-
Confidence            999986543  4 6789999996   479999999999999999999999999 543  35799999875432211000 


Q ss_pred             CCCCCceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEe
Q 020545          152 HGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG  231 (325)
Q Consensus       152 ~~~~~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~  231 (325)
                         .....+.+.+..|.+. +.+|+++.+++.+      +|||+++++|+||||++|||||+|+||.||++|+++++|++
T Consensus       208 ---~~~~~~~l~~~~p~~~-n~~G~~~~v~~~~------l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~  277 (397)
T 2phl_A          208 ---KSSSRKSLSKQDNTIG-NEFGNLTERTDNS------LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVG  277 (397)
T ss_dssp             ---HTC---------CEEE-ETTEEEEEEEETT------TTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEE
T ss_pred             ---CCcccccccccCCccc-CCCCeEEEEeecc------CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEe
Confidence               0123456777777665 4689999999987      78999999999999999999999999999999999999999


Q ss_pred             C------CCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCC-CCceeeecC-ccccccCCC-----HHHHHH
Q 020545          232 L------NAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTST-RPALGKLGG-KQSVMNGFS-----ASVVQL  298 (325)
Q Consensus       232 p------~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~-~p~~~~laG-~~svl~~~~-----~evla~  298 (325)
                      +      +|+++++.+|++|||+|||+|++|++.|.+ +++|++|.+++ +|+.++||| ++++|+++|     ++||++
T Consensus       278 ~~~~~~~~g~~~~~~~l~~GDV~vvP~G~~h~~~n~~-~l~~l~f~~~s~~~~~~~laG~~~sv~~~~p~~~~~~eVla~  356 (397)
T 2phl_A          278 PKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATS-NVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGL  356 (397)
T ss_dssp             ECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESS-SEEEEEEEESCTTCCEEESSSSSSBHHHHHHTSTTHHHHHHH
T ss_pred             ccccccCCCceEEEEEecCCCEEEECCCCeEEEEeCC-CeEEEEEECCCCCCcceecccchhhHHhhCCCccchHHHHHH
Confidence            9      677899999999999999999999998864 89999987765 899999999 799999999     999999


Q ss_pred             HcCCCHHHHHHhhhccCCceEecCC
Q 020545          299 ALNVNEEFLKFFKENVATSEILIPP  323 (325)
Q Consensus       299 af~v~~~~v~~l~~~~~~~~i~~~p  323 (325)
                      +|+++++++++|+++++++.|+.++
T Consensus       357 af~v~~~~v~~l~~~~~e~~i~~~~  381 (397)
T 2phl_A          357 TFSGSGDEVMKLINKQSGSYFVDAH  381 (397)
T ss_dssp             HSSSCHHHHHHHHTTCCCCSEEECC
T ss_pred             HhCcCHHHHHHHHhcCCccEEeCCC
Confidence            9999999999999999887776664

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=100.00  E-value=4.6e-41  Score=322.81  Aligned_cols=294  Identities=13%  Similarity=0.082  Sum_probs=238.1

Q ss_pred             cccceeeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545            5 LYVHIIVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      |++.....||++. ++|+.||++|+ +.++++++++     +++++.|++||+++||+|.+||++|.++++++++++++.
T Consensus        59 l~pg~~~~~H~H~~~~E~~yVl~G~-~~~~v~~~~g-----~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~  132 (361)
T 2vqa_A           59 LEPGAIRELHWHANAAEWAYVMEGR-TRITLTSPEG-----KVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFND  132 (361)
T ss_dssp             ECTTCEEEEEECTTCCEEEEEEESE-EEEEEECTTS-----CEEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESS
T ss_pred             EcCCCCCCceeCCCCCEEEEEEEeE-EEEEEEeCCC-----cEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECC
Confidence            4566777898555 99999999999 9999999874     445789999999999999999999999999999999865


Q ss_pred             CCCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEE-ec-CCcCCCCcccCCCC-CCCceee
Q 020545           84 SRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIK-LG-QDESEKIPLPHQHG-NANLMVN  160 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~-~~-~~~~~~~~~~~p~~-~~~~~~~  160 (325)
                      .+..+   +..|.+   .++|+++|.++|+++|+++.+.+++|.+.+.  .|++ .. .+.........+.+ ..+.+.|
T Consensus       133 ~~~~~---~~~~~~---~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~--~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~  204 (361)
T 2vqa_A          133 GTFSE---GATFSV---TDWLSHTPIAWVEENLGWTAAQVAQLPKKQV--YISSYGPASGPLASATPQGQTAKIEVPHTH  204 (361)
T ss_dssp             TTCCT---TSSEEH---HHHHHTSCHHHHHHHHTCCHHHHTTSCSSCC--CEECSSCCCCCGGGCCCSSCCCBCCSCCEE
T ss_pred             CCccc---cceecH---hHHHHhCCHHHHHHHhCcCHHHHHhccccCc--eEEeCCCCCCccccccccCcCCCCCcceEe
Confidence            43332   234443   3999999999999999999999999987664  4662 11 11000001111211 2456788


Q ss_pred             eecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeE
Q 020545          161 NFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDS  240 (325)
Q Consensus       161 nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~  240 (325)
                      ++.+.++.. ++.||+++.+.+.++|.++  ++++.+++|.||++..||||+++.|+.||++|++++++++++|+ ....
T Consensus       205 ~~~~~~~~~-~~~gg~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~  280 (361)
T 2vqa_A          205 NLLGQQPLV-SLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVS  280 (361)
T ss_dssp             ECTTSCCSE-EETTEEEEEECTTTCTTST--TCEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEE
T ss_pred             ccccCCCcc-cCCCceEEEEehhhCcCcc--cceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEE
Confidence            887776643 4679999999999999987  47899999999999999999999999999999999999998875 3456


Q ss_pred             EecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccCCceE
Q 020545          241 EVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVATSEI  319 (325)
Q Consensus       241 ~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~~~~i  319 (325)
                      +|++||+++||+|.+|+..| ++++++++.+++..++....++   ++++++|++||+++|+++++++++|++++. .+|
T Consensus       281 ~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~vl~~~f~~~~~~~~~l~~~~~-~~~  356 (361)
T 2vqa_A          281 RLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLS---TWLASNPSSVLGNTFQISPELTKKLPVQDT-IFS  356 (361)
T ss_dssp             EECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCCEEHH---HHHHTSCHHHHHHHHTCCHHHHTTSCCSCC-SEE
T ss_pred             EECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcceeeHH---HHhhhCCHHHHHHHHCcCHHHHHhhhccCC-ccc
Confidence            89999999999999999766 7788999999999888877785   699999999999999999999999975543 344


Q ss_pred             e
Q 020545          320 L  320 (325)
Q Consensus       320 ~  320 (325)
                      .
T Consensus       357 ~  357 (361)
T 2vqa_A          357 L  357 (361)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=100.00  E-value=1.5e-34  Score=279.97  Aligned_cols=285  Identities=15%  Similarity=0.155  Sum_probs=228.0

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      |.+.....||++.+.|+.||++|+ +.+++++.++     +..++.|++||+++||+|.+|++.|.+ ++++++++++..
T Consensus        86 l~pg~~~~~H~H~~~E~~~Vl~G~-~~~~~~~~~g-----~~~~~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~  158 (385)
T 1j58_A           86 LKPGAIRELHWHKEAEWAYMIYGS-ARVTIVDEKG-----RSFIDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDG  158 (385)
T ss_dssp             ECTTCEEEEEEESSCEEEEEEEEE-EEEEEECTTS-----CEEEEEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCT
T ss_pred             ECCCCCCCCccCChheEEEEEeee-EEEEEEeCCC-----cEEEEEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCC
Confidence            345667778877799999999999 9999998764     444579999999999999999999997 468888888543


Q ss_pred             CCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCC--c-ccCCCC-CCCceee
Q 020545           85 RAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKI--P-LPHQHG-NANLMVN  160 (325)
Q Consensus        85 ~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~--~-~~~p~~-~~~~~~~  160 (325)
                         ....+..|.+.   ++|+++|.++|+++|+++.+++++|.+.+.  .|+....+.  .+  . ...+.+ ....+.|
T Consensus       159 ---~~~~~~~~~~~---~~~~~~p~evla~~~~vs~~~~~~l~~~~~--~i~~~~~p~--~l~~~~~~~~~~~~~~~~v~  228 (385)
T 1j58_A          159 ---SFSENSTFQLT---DWLAHTPKEVIAANFGVTKEEISNLPGKEK--YIFENQLPG--SLKDDIVEGPNGEVPYPFTY  228 (385)
T ss_dssp             ---TCCGGGEEEHH---HHHHTSCHHHHHHHHTCCTGGGTTSCSSCC--SEECCCCCC--CHHHHCCCCTTCCCSSCSEE
T ss_pred             ---Cccccchhhhh---hhhhcccHHHHHHHhCCCHHHHHhcccccc--eEeccCCCC--ccccccccCCCCCCCCCeee
Confidence               33344556554   899999999999999999999999987553  465442211  11  0 011111 1346788


Q ss_pred             eecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc-eEEe
Q 020545          161 NFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK-LVLD  239 (325)
Q Consensus       161 nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~-~~~~  239 (325)
                      ++.+.+| +. ..+|.++.+.+.+++..+  ++++.+++|.||++..+|||+.+.|+.||++|++++++.+++|+ +.  
T Consensus       229 ~~~~~~~-~~-~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~--  302 (385)
T 1j58_A          229 RLLEQEP-IE-SEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHART--  302 (385)
T ss_dssp             EGGGSCC-EE-CSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEE--
T ss_pred             ecccCCC-ee-CCCceEEEeecccCCccc--ceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEE--
Confidence            9888777 33 458999999999888654  57999999999999999999998999999999999999988774 44  


Q ss_pred             EEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccC
Q 020545          240 SEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA  315 (325)
Q Consensus       240 ~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~  315 (325)
                      .+|++||+++||+|.+|+..| ++++++++.++....+....+   .++|..+|+++++++|+++++++++|++.+.
T Consensus       303 ~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~~~~~d~~~---~~~l~~~~~~v~~~~f~~~~~~~~~l~~~~~  376 (385)
T 1j58_A          303 FNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSL---NQWLAMLPETFVQAHLDLGKDFTDVLSKEKH  376 (385)
T ss_dssp             EEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEH---HHHHHTSCHHHHHHHHTCCHHHHTTCCSSCC
T ss_pred             EEEcCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCccccCH---HHHHHhCCHHHHHHHhCCCHHHHHhhhccCC
Confidence            469999999999999998666 778899999988776654444   5889999999999999999999999996543

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.96  E-value=6.8e-29  Score=216.67  Aligned_cols=159  Identities=14%  Similarity=0.173  Sum_probs=135.1

Q ss_pred             CceeeeecCCCCCeeccCCeEEEEEcC-----CCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEE
Q 020545          156 NLMVNNFANFPADFCVKKAGMVTSFTG-----SNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIV  230 (325)
Q Consensus       156 ~~~~~nl~~~~p~~~~~~gG~~~~~~~-----~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv  230 (325)
                      +++.|++.+.++.+. .+||+++.+++     ..+|.|+  ++++.+++|.||++++|| |++|+|+.||++|+++++++
T Consensus         2 ~p~~f~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~   77 (178)
T 1dgw_A            2 NPYLFRSNKFLTLFK-NQHGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLV   77 (178)
T ss_dssp             CTTEECGGGEEEEEE-ETTEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEE
T ss_pred             CCceechhhcccceE-cCCCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEE
Confidence            568899988777664 57999999887     4566666  689999999999999999 89999999999999999999


Q ss_pred             eCCCceEEeEEecCccEEEECCccEEEEEc-CCC-CEEEEEEe-CCCCCc---eeeecCc---cccccCCCHHHHHHHcC
Q 020545          231 GLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPE-GIECFSIT-TSTRPA---LGKLGGK---QSVMNGFSASVVQLALN  301 (325)
Q Consensus       231 ~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~-~~~~~~~~-~s~~p~---~~~laG~---~svl~~~~~evla~af~  301 (325)
                      +++|.+.  .+|++||+++||+|.+|++.| |++ .++++.+. ++++|+   .++|+|.   +++|+++|++||++||+
T Consensus        78 ~~~~~~~--~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~~~p~~vla~af~  155 (178)
T 1dgw_A           78 NPDGRDT--YKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYD  155 (178)
T ss_dssp             ETTEEEE--EEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHT
T ss_pred             eCCCcEE--EEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhhhCCHHHHHHHHC
Confidence            9987554  479999999999999999777 665 68877664 455664   6789998   79999999999999999


Q ss_pred             CCHHHHHHhh-hccCCceEe
Q 020545          302 VNEEFLKFFK-ENVATSEIL  320 (325)
Q Consensus       302 v~~~~v~~l~-~~~~~~~i~  320 (325)
                      ++++++++|+ ++|+++.|+
T Consensus       156 v~~~~~~~l~~~~~~~~~iv  175 (178)
T 1dgw_A          156 SPYDEIEQTLLQEEQEGVIV  175 (178)
T ss_dssp             SCHHHHHHHTTSCCSSSSEE
T ss_pred             cCHHHHHHHhcCcCcCceEE
Confidence            9999999999 555666676

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.96  E-value=1.1e-28  Score=244.51  Aligned_cols=158  Identities=19%  Similarity=0.328  Sum_probs=135.8

Q ss_pred             eecCCCCCee-ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545          161 NFANFPADFC-VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL-  238 (325)
Q Consensus       161 nl~~~~p~~~-~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~-  238 (325)
                      +|...+|+.. ..+||.+..|+ .++|+|+|+||++++++|.||||++|||| +|++|+||++|++.++|++|++..+| 
T Consensus        14 ~L~a~eP~~~~~se~G~~e~~~-~~~~~L~~~gvs~~R~~i~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~   91 (496)
T 3ksc_A           14 RLDALEPDNRIESEGGLIETWN-PNNKQFRCAGVALSRATLQRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFE   91 (496)
T ss_dssp             CCCCBCCSEEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC--
T ss_pred             cCCcCCCccccCCCCcEEEecc-ccchhhccCCceEEEEEecCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccch
Confidence            5666677742 45899999998 67899999999999999999999999999 99999999999999999999865554 


Q ss_pred             -------------------eEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------CceeeecCc------
Q 020545          239 -------------------DSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------PALGKLGGK------  284 (325)
Q Consensus       239 -------------------~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p~~~~laG~------  284 (325)
                                         .++|++||||+||+|++||++| |+++++++++++..|        +..+||||+      
T Consensus        92 ~~~~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~  171 (496)
T 3ksc_A           92 EPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFL  171 (496)
T ss_dssp             -------------CCCCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTG
T ss_pred             hhhhcccccccccccchheeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCccccc
Confidence                               2489999999999999999777 788999998776544        457999998      


Q ss_pred             ----------------cccccCCCHHHHHHHcCCCHHHHHHhh---hccCCceEe
Q 020545          285 ----------------QSVMNGFSASVVQLALNVNEEFLKFFK---ENVATSEIL  320 (325)
Q Consensus       285 ----------------~svl~~~~~evla~af~v~~~~v~~l~---~~~~~~~i~  320 (325)
                                      +|+|++|++++|+.|||++.+++++|+   .++....|+
T Consensus       172 ~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV  226 (496)
T 3ksc_A          172 QYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIV  226 (496)
T ss_dssp             GGCC-----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEE
T ss_pred             cccccccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEE
Confidence                            699999999999999999999999999   334445565

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.96  E-value=1.7e-28  Score=241.44  Aligned_cols=158  Identities=14%  Similarity=0.289  Sum_probs=136.8

Q ss_pred             eecCCCCCe-eccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545          161 NFANFPADF-CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL-  238 (325)
Q Consensus       161 nl~~~~p~~-~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~-  238 (325)
                      +|...+|+. ...+||.+..|+..+ +.|+|+|+++++++|+|||+++|||| +|++|+||++|+++++++.|+|.++| 
T Consensus        18 ~l~a~eP~~~i~se~G~~e~~d~~~-~~l~~~gvs~~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~   95 (465)
T 3qac_A           18 RLTALEPTNRIQAERGLTEVWDSNE-QEFRCAGVSVIRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYE   95 (465)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC-
T ss_pred             cCCCCCCccceeCCCcEEEEECCCC-hhhcccceEEEEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceee
Confidence            566677763 245899999999655 79999999999999999999999999 99999999999999999999876544 


Q ss_pred             -----------------------------------eEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCC--------
Q 020545          239 -----------------------------------DSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTST--------  274 (325)
Q Consensus       239 -----------------------------------~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~--------  274 (325)
                                                         ..+|++|||++||+|++||++| |++++++++++++.        
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld~  175 (465)
T 3qac_A           96 SGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDK  175 (465)
T ss_dssp             -----------------------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSCS
T ss_pred             cchhccccccccccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCccccccc
Confidence                                               3489999999999999999877 88899999888764        


Q ss_pred             -CCceeeecCc----------------------cccccCCCHHHHHHHcCCCHHHHHHhhhccCC-ceEe
Q 020545          275 -RPALGKLGGK----------------------QSVMNGFSASVVQLALNVNEEFLKFFKENVAT-SEIL  320 (325)
Q Consensus       275 -~p~~~~laG~----------------------~svl~~~~~evla~af~v~~~~v~~l~~~~~~-~~i~  320 (325)
                       ++..++|||+                      +++|++|++++|++|||++.+++++|++.+++ ..|+
T Consensus       176 ~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Iv  245 (465)
T 3qac_A          176 NFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIV  245 (465)
T ss_dssp             SSCCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEE
T ss_pred             ccceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEE
Confidence             3567999996                      58999999999999999999999999988753 3455

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.95  E-value=9.9e-28  Score=236.73  Aligned_cols=159  Identities=15%  Similarity=0.239  Sum_probs=135.9

Q ss_pred             eecCCCCCe-eccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545          161 NFANFPADF-CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL-  238 (325)
Q Consensus       161 nl~~~~p~~-~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~-  238 (325)
                      +|...+|+. ...++|.+..++.. .|.|+|+|+++++++|+|||+++|||| +|++|+||++|++++++++|+|..+| 
T Consensus        31 ~l~a~eP~~~v~se~G~~~~~~~~-~~~l~~~gvs~~r~~i~pggl~~Ph~h-~a~ei~yVl~G~g~vg~v~p~~~~tf~  108 (459)
T 2e9q_A           31 NLRAQDPVRRAEAEAGFTEVWDQD-NDEFQCAGVNMIRHTIRPKGLLLPGFS-NAPKLIFVAQGFGIRGIAIPGCAETYQ  108 (459)
T ss_dssp             SCCCBCCCEEEEETTEEEEECCTT-SHHHHHHTEEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred             cCCcCCCCceEecCCcEEEecCCC-ChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEeeEEEEEEEeCCCcchhc
Confidence            566677773 24589999998854 599999999999999999999999998 59999999999999999999875444 


Q ss_pred             -------------------eEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------CceeeecCc------
Q 020545          239 -------------------DSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------PALGKLGGK------  284 (325)
Q Consensus       239 -------------------~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p~~~~laG~------  284 (325)
                                         ..+|++|||++||+|++||++| |+++++++.++++.|        +..++|||.      
T Consensus       109 ~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~  188 (459)
T 2e9q_A          109 TDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVER  188 (459)
T ss_dssp             ECCC-------CCCEEECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSS
T ss_pred             cchhhccccccccccccceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCccccch
Confidence                               3589999999999999999776 778899998887544        567899985      


Q ss_pred             ------------------cccccCCCHHHHHHHcCCCHHHHHHhhhccC-CceEec
Q 020545          285 ------------------QSVMNGFSASVVQLALNVNEEFLKFFKENVA-TSEILI  321 (325)
Q Consensus       285 ------------------~svl~~~~~evla~af~v~~~~v~~l~~~~~-~~~i~~  321 (325)
                                        +++|++||+++|++||+++.+++++|++.+. ...|+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~  244 (459)
T 2e9q_A          189 GVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQ  244 (459)
T ss_dssp             TTCC------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEE
T ss_pred             hhhccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEE
Confidence                              3899999999999999999999999998776 335553

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.95  E-value=3.9e-27  Score=205.54  Aligned_cols=126  Identities=18%  Similarity=0.312  Sum_probs=114.4

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCC-CEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~-~l~~~~~~~~   83 (325)
                      |++..+..|||++++|+.||++|+ ++++++++++      .+++.|++||+++||+|.+||++|.|++ +++++++.++
T Consensus        48 l~pg~~~~pHh~~a~E~~yVl~G~-~~v~v~~~~~------~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~  120 (178)
T 1dgw_A           48 SKPNTLLLPHHSDSDLLVLVLEGQ-AILVLVNPDG------RDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAIT  120 (178)
T ss_dssp             ECTTEEEEEEEESSEEEEEEEESE-EEEEEEETTE------EEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEEC
T ss_pred             ecCCcEecCcCCCCCEEEEEEeEE-EEEEEEeCCC------cEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECC
Confidence            567889999999999999999999 9999999885      4478999999999999999999999986 8999999874


Q ss_pred             CCCCCCCcceeeeeccc---cccccCCChhHHhhhcCCCHHHHHHHh-cccCceeEEEec
Q 020545           84 SRAYVPGEFSYFLLTGA---QGILGGFSSEFTGRAYNMNENEAKILA-KSQTGVLIIKLG  139 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~---~s~l~~f~~~vLa~af~v~~~~~~~l~-~~q~~~~Iv~~~  139 (325)
                      +  ++|+.+..|||+|+   .+||++||++||++||+++++++++|+ ++|+++.|||++
T Consensus       121 ~--~~~g~~~~~~l~g~~~~~~~~~~~p~~vla~af~v~~~~~~~l~~~~~~~~~iv~~~  178 (178)
T 1dgw_A          121 F--RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP  178 (178)
T ss_dssp             C--SSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECC
T ss_pred             C--CCCCceEEeeccCCcCcchhhhhCCHHHHHHHHCcCHHHHHHHhcCcCcCceEEEcC
Confidence            3  68899999999998   799999999999999999999999999 566678999875

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.95  E-value=5.6e-27  Score=230.72  Aligned_cols=158  Identities=15%  Similarity=0.282  Sum_probs=135.6

Q ss_pred             eecCCCCCe-eccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEe
Q 020545          161 NFANFPADF-CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLD  239 (325)
Q Consensus       161 nl~~~~p~~-~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~  239 (325)
                      +|...+|+. ...++|.+..|+..+ |.|+|+|+++++++|+|||+++||||+ |++++||++|++.+++++|+|...|.
T Consensus        11 ~l~a~ep~~~~~se~G~~e~w~~~~-~~L~~~gvs~~r~~i~p~Gl~lPh~~~-a~e~~~V~~G~g~~G~v~pgc~et~~   88 (466)
T 3kgl_A           11 QLNALEPSHVLKAEAGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFFS-TAKLSFVAKGEGLMGRVVPGCAETFQ   88 (466)
T ss_dssp             CCCCBCCSEEEEETTEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEEECTTCCCCEE
T ss_pred             cCCCCCCcceeeCCCcEEEEECCCC-hhhccCCeEEEEEEECCCCEeCCeeCC-CCeEEEEEeCeEEEEEecCCCcchhh
Confidence            455566664 245899999999776 999999999999999999999999996 99999999999999999997655440


Q ss_pred             ----------------------------------------------------------EEecCccEEEECCccEEEEEc-
Q 020545          240 ----------------------------------------------------------SEVEAGQLLVVPRCFVVAIIA-  260 (325)
Q Consensus       240 ----------------------------------------------------------~~l~~Gdv~vvP~G~~h~~~~-  260 (325)
                                                                                .+|++|||++||+|++||++| 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~  168 (466)
T 3kgl_A           89 DSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYND  168 (466)
T ss_dssp             ECCSSCCCC-----------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeC
Confidence                                                                      389999999999999999877 


Q ss_pred             CCCCEEEEEEeCCCC--------CceeeecCcc----------------ccccCCCHHHHHHHcCCCHHHHHHhhhccC-
Q 020545          261 GPEGIECFSITTSTR--------PALGKLGGKQ----------------SVMNGFSASVVQLALNVNEEFLKFFKENVA-  315 (325)
Q Consensus       261 g~~~~~~~~~~~s~~--------p~~~~laG~~----------------svl~~~~~evla~af~v~~~~v~~l~~~~~-  315 (325)
                      |+++++++.+++..|        +..++|||+.                |+|++|++++|++||+++.+++++|++.+. 
T Consensus       169 g~e~L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~~  248 (466)
T 3kgl_A          169 GNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDN  248 (466)
T ss_dssp             SSSCEEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTCC
T ss_pred             CCCcEEEEEEEcCCCcccccCCceeeeEecCCCccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhccccC
Confidence            788899888875433        4679999986                899999999999999999999999998875 


Q ss_pred             CceEe
Q 020545          316 TSEIL  320 (325)
Q Consensus       316 ~~~i~  320 (325)
                      ...|+
T Consensus       249 ~G~Iv  253 (466)
T 3kgl_A          249 RGNII  253 (466)
T ss_dssp             SCSEE
T ss_pred             ceeEE
Confidence            44565

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.94  E-value=7.5e-27  Score=231.55  Aligned_cols=159  Identities=19%  Similarity=0.321  Sum_probs=133.3

Q ss_pred             eecCCCCCe-eccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545          161 NFANFPADF-CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL-  238 (325)
Q Consensus       161 nl~~~~p~~-~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~-  238 (325)
                      +|...+|+. ...++|.+..++..+ |.|+|+|+++++++|+|||+++||||+ |++|+||++|+|++++++|+|..+| 
T Consensus        16 ~l~a~~P~~~v~se~G~~e~~~~~~-~~l~~~gvs~~r~~l~Pggl~~Ph~~~-a~ei~yV~~G~g~~g~v~pg~~et~~   93 (476)
T 1fxz_A           16 KLNALKPDNRIESEGGLIETWNPNN-KPFQCAGVALSRCTLNRNALRRPSYTN-GPQEIYIQQGKGIFGMIYPGCPSTFE   93 (476)
T ss_dssp             CCCCBCCSCEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEES-SCEEEEEEECCEEEEEECTTCCCC--
T ss_pred             cCCCCCCceEEecCCceEEeeCCCC-hhhccCceEEEEEEEcCCCEecceecC-CceEEEEEecEEEEEEEcCCCcchhh
Confidence            455566763 245899999998655 999999999999999999999999985 9999999999999999999875322 


Q ss_pred             --------------------eEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------CceeeecCc-----
Q 020545          239 --------------------DSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------PALGKLGGK-----  284 (325)
Q Consensus       239 --------------------~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p~~~~laG~-----  284 (325)
                                          ..+|++|||++||+|.+||++| |+++++++.++++.|        +..++|||.     
T Consensus        94 ~~~~~~~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~  173 (476)
T 1fxz_A           94 EPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEF  173 (476)
T ss_dssp             ----------------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTT
T ss_pred             ccccccccccccccccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCccccc
Confidence                                3589999999999999999776 788999998887543        467889984     


Q ss_pred             -------------------------cccccCCCHHHHHHHcCCCHHHHHHhhhccC---CceEec
Q 020545          285 -------------------------QSVMNGFSASVVQLALNVNEEFLKFFKENVA---TSEILI  321 (325)
Q Consensus       285 -------------------------~svl~~~~~evla~af~v~~~~v~~l~~~~~---~~~i~~  321 (325)
                                               +++|++|++++|++||+++.+++++|++.+.   ...|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~  238 (476)
T 1fxz_A          174 LKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVT  238 (476)
T ss_dssp             HHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEE
T ss_pred             cccccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEE
Confidence                                     4799999999999999999999999998775   445653

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.94  E-value=4.2e-26  Score=202.51  Aligned_cols=158  Identities=16%  Similarity=0.221  Sum_probs=141.7

Q ss_pred             CCceeeee-cCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCC
Q 020545          155 ANLMVNNF-ANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN  233 (325)
Q Consensus       155 ~~~~~~nl-~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~  233 (325)
                      .+.+.|++ .+.+++..+..|+.++.++..++|.|+++++++.++++.||++..||||+++.|+.||++|++++++.+++
T Consensus        33 ~~df~~~~~~~~~~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~  112 (201)
T 1fi2_A           33 GDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSL  112 (201)
T ss_dssp             CSCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCG
T ss_pred             ccceEEeeeecCCCCccCCCCcEEEEEecccCCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCC
Confidence            46789998 77777777778889999999999999999999999999999999999999999999999999999999875


Q ss_pred             --CceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccC---CCHHHHHHHcCCCHHHH
Q 020545          234 --AKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNG---FSASVVQLALNVNEEFL  307 (325)
Q Consensus       234 --g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~---~~~evla~af~v~~~~v  307 (325)
                        |.+++...|++||+++||+|.+|++.| ++++++++.++++++|+...++  .++|+.   +++++|+++|+++++++
T Consensus       113 ~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~p~~~~~~--~~~~~~~~~~~~~vl~~af~~~~~~v  190 (201)
T 1fi2_A          113 DSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVP--LTLFGSDPPIPTPVLTKALRVEAGVV  190 (201)
T ss_dssp             GGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCCEEHH--HHHHHCSSCCCHHHHHHHHTSCHHHH
T ss_pred             CCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCCCeEehh--hHHhcCCCCCCHHHHHHHHCcCHHHH
Confidence              245566789999999999999999766 7788999999999999888786  567876   99999999999999999


Q ss_pred             HHhhhcc
Q 020545          308 KFFKENV  314 (325)
Q Consensus       308 ~~l~~~~  314 (325)
                      ++|++..
T Consensus       191 ~~l~~~~  197 (201)
T 1fi2_A          191 ELLKSKF  197 (201)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhh
Confidence            9999875

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.94  E-value=2e-26  Score=229.19  Aligned_cols=162  Identities=22%  Similarity=0.355  Sum_probs=135.5

Q ss_pred             eeeeecCCCCCe-eccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce
Q 020545          158 MVNNFANFPADF-CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL  236 (325)
Q Consensus       158 ~~~nl~~~~p~~-~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~  236 (325)
                      ..++|...+|+. ...+||.+..++.. .|+|+|+|+++++++|+|||+++||||+ +++|+||++|+|++++++|+|..
T Consensus        10 ~~~~L~a~~P~~~~~se~G~~e~~~~~-~~~l~~~gv~~~r~~i~pggl~~Ph~~~-~~~i~yV~~G~g~vg~v~pgc~e   87 (493)
T 2d5f_A           10 QLNNLNALEPDHRVESEGGLIETWNSQ-HPELQCAGVTVSKRTLNRNGLHLPSYSP-YPQMIIVVQGKGAIGFAFPGCPE   87 (493)
T ss_dssp             CCSCCCCBCCCEEEECSSEEEEECCTT-SHHHHHHTCEEEEEEECTTEEEEEEECS-SCEEEEEEECEEEEEECCTTCCC
T ss_pred             CcccCCCCCCcceeecCCcEEEEeCCC-ChhhccCCEEEEEEEeCCCcEeCceecC-CCeEEEEEeCEEEEEEEeCCCcc
Confidence            357888888873 24579999988854 5999999999999999999999999985 88999999999999999887521


Q ss_pred             ------------------------EEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCC---C-----CceeeecC
Q 020545          237 ------------------------VLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTST---R-----PALGKLGG  283 (325)
Q Consensus       237 ------------------------~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~---~-----p~~~~laG  283 (325)
                                              ....+|++||||+||+|++||++| |+++++++.+++..   |     +..++|||
T Consensus        88 t~~~~~~~~~~~~~~~~~~~~d~~qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~n~~nqld~~~~~F~LaG  167 (493)
T 2d5f_A           88 TFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAG  167 (493)
T ss_dssp             CEEECC-------------CSEEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSS
T ss_pred             ccccccccccccccccccccccccceEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCcCcccccccccceeeccC
Confidence                                    012379999999999999999777 78899999887743   3     36789998


Q ss_pred             c---------------------------------cccccCCCHHHHHHHcCCCHHHHHHhhhccC-CceEec
Q 020545          284 K---------------------------------QSVMNGFSASVVQLALNVNEEFLKFFKENVA-TSEILI  321 (325)
Q Consensus       284 ~---------------------------------~svl~~~~~evla~af~v~~~~v~~l~~~~~-~~~i~~  321 (325)
                      .                                 ++||++|++++|++||+++.+++++|++.+. ...|+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~e~La~aF~v~~~~v~kl~~~~~~~g~Iv~  239 (493)
T 2d5f_A          168 NPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVT  239 (493)
T ss_dssp             CCCCSCGGGTC---------------------CCCCGGGGSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEE
T ss_pred             CccccchhhhhhcccccccccccccccccccccccchhhcCCHHHHHhHhCCCHHHHHHhhhcccCcccEEE
Confidence            3                                 4899999999999999999999999998776 344653

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.94  E-value=2.9e-26  Score=227.19  Aligned_cols=158  Identities=20%  Similarity=0.337  Sum_probs=134.0

Q ss_pred             eecCCCCCee-ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545          161 NFANFPADFC-VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL-  238 (325)
Q Consensus       161 nl~~~~p~~~-~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~-  238 (325)
                      +|...+|+.. ..+||.+..|+ .++|.|+|+|++++|++|.|+|+.+||||+ |++++||++|++.++++.|+|..+| 
T Consensus        16 ~l~a~eP~~~i~se~G~~e~w~-~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~-a~el~yV~qG~g~~G~v~Pgcpet~~   93 (531)
T 3fz3_A           16 QLQAREPDNRIQAEAGQIETWN-FNQGDFQCAGVAASRITIQRNGLHLPSYSN-APQLIYIVQGRGVLGAVFSGCPETFE   93 (531)
T ss_dssp             CCCCBCCCEEEEETTEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred             ccCcCCCchhcccCCceEEEeC-CCChhhccCcceEEEEEecCCCEeCCccCC-CCeEEEEEECcEEEEEEcCCCccccc
Confidence            5566677743 45899999999 568999999999999999999999999996 9999999999999999999764322 


Q ss_pred             -------------------------------------------------------------------------------e
Q 020545          239 -------------------------------------------------------------------------------D  239 (325)
Q Consensus       239 -------------------------------------------------------------------------------~  239 (325)
                                                                                                     -
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv  173 (531)
T 3fz3_A           94 ESQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKT  173 (531)
T ss_dssp             CCCC-------------------------------------------------------------------CCSCEESCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceee
Confidence                                                                                           1


Q ss_pred             EEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------CceeeecCc--------------------------
Q 020545          240 SEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------PALGKLGGK--------------------------  284 (325)
Q Consensus       240 ~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p~~~~laG~--------------------------  284 (325)
                      .+|++|||++||+|.+||++| |+++++++.+++..|        +..|||||+                          
T Consensus       174 ~~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (531)
T 3fz3_A          174 RRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQ  253 (531)
T ss_dssp             EEEETTEEEEECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC-------------------
T ss_pred             ecccCCcEEEECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCccccccccccccccccccccccccc
Confidence            378999999999999999777 788898888775433        567999997                          


Q ss_pred             ---------------cccccCCCHHHHHHHcCCCHHHHHHhhhccC-CceEe
Q 020545          285 ---------------QSVMNGFSASVVQLALNVNEEFLKFFKENVA-TSEIL  320 (325)
Q Consensus       285 ---------------~svl~~~~~evla~af~v~~~~v~~l~~~~~-~~~i~  320 (325)
                                     +|+|++|+.++|+.|||++.+++++|++.+. ...|+
T Consensus       254 ~~~~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IV  305 (531)
T 3fz3_A          254 QPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQII  305 (531)
T ss_dssp             -------------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEE
T ss_pred             ccccccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEE
Confidence                           3899999999999999999999999997765 34454

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.93  E-value=1.1e-25  Score=223.90  Aligned_cols=159  Identities=18%  Similarity=0.311  Sum_probs=133.2

Q ss_pred             eecCCCCCee-ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceE--
Q 020545          161 NFANFPADFC-VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLV--  237 (325)
Q Consensus       161 nl~~~~p~~~-~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~--  237 (325)
                      +|...+|+.. ..++|.+..|+..+ |.|+|+|+++++++|+|||+++|||| +|++|+||++|+|++++++|+|..+  
T Consensus        16 ~l~a~~p~~~~~se~G~~e~~~~~~-~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~~~~yV~~G~g~~g~v~pg~~et~~   93 (510)
T 3c3v_A           16 RLNAQRPDNRIESEGGYIETWNPNN-QEFECAGVALSRLVLRRNALRRPFYS-NAPQEIFIQQGRGYFGLIFPGCPSTYE   93 (510)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECCEEEEEECTTCCCCEE
T ss_pred             cCCCCCchhhhccCCceEEEeCCCC-cccccCcEEEEEEEECCCCCccceec-CCCeEEEEEeCEEEEEEEeCCCccccc
Confidence            4556677642 45899999998555 99999999999999999999999997 5999999999999999999976211  


Q ss_pred             --------------------------------EeEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------C
Q 020545          238 --------------------------------LDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------P  276 (325)
Q Consensus       238 --------------------------------~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p  276 (325)
                                                      ...+|++|||++||+|.+||++| |+++++++.+++..|        +
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~~  173 (510)
T 3c3v_A           94 EPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFP  173 (510)
T ss_dssp             EECCC--------------------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSCC
T ss_pred             cccccccccccccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCccccccccc
Confidence                                            12589999999999999999776 788999998887654        4


Q ss_pred             ceeeecCc----------------------------------------------------------cccccCCCHHHHHH
Q 020545          277 ALGKLGGK----------------------------------------------------------QSVMNGFSASVVQL  298 (325)
Q Consensus       277 ~~~~laG~----------------------------------------------------------~svl~~~~~evla~  298 (325)
                      ..++|||+                                                          ++||++|++++|++
T Consensus       174 r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La~  253 (510)
T 3c3v_A          174 RRFNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLAQ  253 (510)
T ss_dssp             CCEESSCCCCCTTGGGCC------------------------------------------------CCTGGGSCHHHHHH
T ss_pred             ceeEecCCcccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceecCCHHHHHH
Confidence            67889972                                                          37999999999999


Q ss_pred             HcCCC-HHHHHHhhhccC---CceEec
Q 020545          299 ALNVN-EEFLKFFKENVA---TSEILI  321 (325)
Q Consensus       299 af~v~-~~~v~~l~~~~~---~~~i~~  321 (325)
                      |||++ ++++++|+..+.   ...|+.
T Consensus       254 af~v~~~~~~~~l~~~~~~~~~g~Iv~  280 (510)
T 3c3v_A          254 AFQVDDRQIVQNLRGENESEEQGAIVT  280 (510)
T ss_dssp             HHTCCCHHHHHHHTTTTCCTTSCSEEE
T ss_pred             HhCCCHHHHHHHhhccccccccccEEE
Confidence            99999 999999988765   345553

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.93  E-value=8.9e-26  Score=219.11  Aligned_cols=163  Identities=15%  Similarity=0.154  Sum_probs=134.5

Q ss_pred             CceeeeecC-CCCCeeccCCeEEEEEcC--CCCccccccc-ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEe
Q 020545          156 NLMVNNFAN-FPADFCVKKAGMVTSFTG--SNFPFLEQVG-LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG  231 (325)
Q Consensus       156 ~~~~~nl~~-~~p~~~~~~gG~~~~~~~--~~~p~L~~~g-is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~  231 (325)
                      +++.|...+ .++.+ ..++|+++.+++  .+.|.|++++ +++++++|+|||+++|||| +|+||.||++|++++++++
T Consensus        12 ~p~~f~~~~~~~~~~-~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~   89 (397)
T 2phl_A           12 NPFYFNSDNSWNTLF-KNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVK   89 (397)
T ss_dssp             CTTEECGGGTEEEEE-EETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEE
T ss_pred             CCcEeccchhccceE-EcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEe
Confidence            456777665 44434 468999999722  4458999998 9999999999999999998 9999999999999999999


Q ss_pred             CCCceEEeEEecCccE------EEECCccEEEEEc-C-CCCEEEEEEeCC-CCC--ceeeecCc---cccccCCCHHHHH
Q 020545          232 LNAKLVLDSEVEAGQL------LVVPRCFVVAIIA-G-PEGIECFSITTS-TRP--ALGKLGGK---QSVMNGFSASVVQ  297 (325)
Q Consensus       232 p~g~~~~~~~l~~Gdv------~vvP~G~~h~~~~-g-~~~~~~~~~~~s-~~p--~~~~laG~---~svl~~~~~evla  297 (325)
                      ++|..  ..+|++||+      ++||+|.+||+.| | +++++++.++++ ++|  ..++|+|.   .++|++||++||+
T Consensus        90 ~~~~~--~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~f~L~G~~~~~s~~~~~~~~vLa  167 (397)
T 2phl_A           90 PDDRR--EYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILE  167 (397)
T ss_dssp             TTTEE--EEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGGSCHHHHH
T ss_pred             CCCcE--EEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCccceeeeccCCCchhHHhhcCCHHHHH
Confidence            98754  568999999      9999999999876 6 678999988754 333  45789885   5799999999999


Q ss_pred             HHcCCCHHHHHHhhhcc---CCceEecC
Q 020545          298 LALNVNEEFLKFFKENV---ATSEILIP  322 (325)
Q Consensus       298 ~af~v~~~~v~~l~~~~---~~~~i~~~  322 (325)
                      +||+++++++++|+..+   ++..|+..
T Consensus       168 ~af~v~~~~v~~l~~~~~~q~~~~Iv~~  195 (397)
T 2phl_A          168 ASFNSKFEEINRVLFEEEGQQEGVIVNI  195 (397)
T ss_dssp             HHHTSCHHHHHHHHTCSTTCBSSSEEEC
T ss_pred             HHhCCCHHHHHhhhhcccccccCceEEc
Confidence            99999999999999444   34566654

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.92  E-value=2.3e-24  Score=211.86  Aligned_cols=155  Identities=15%  Similarity=0.222  Sum_probs=129.4

Q ss_pred             CCceeeeecC-CCCCeeccCCeEEEEEcC--CCCccccccc-ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEE
Q 020545          155 ANLMVNNFAN-FPADFCVKKAGMVTSFTG--SNFPFLEQVG-LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIV  230 (325)
Q Consensus       155 ~~~~~~nl~~-~~p~~~~~~gG~~~~~~~--~~~p~L~~~g-is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv  230 (325)
                      .+++.|++.. .++.+. .++|+++.++.  .+.|.|++++ +++++++|+|||+++|| |++|+||.||++|+++++++
T Consensus        20 ~~p~~f~~~~~~~~~~~-se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v   97 (434)
T 2ea7_A           20 NNPFYFNSDRWFRTLYR-NEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLV   97 (434)
T ss_dssp             GCTTEECTTTSEEEEEE-ETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEE
T ss_pred             CCCeEEeccccccceEE-cCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEE
Confidence            3456666655 445554 47999999754  5668999998 99999999999999999 78999999999999999999


Q ss_pred             eCCCceEEeEEecCccEEEECCccEEEEEc-C-CCCEEEEEEeC-CCCC---ceeeecCc---cccccCCCHHHHHHHcC
Q 020545          231 GLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-G-PEGIECFSITT-STRP---ALGKLGGK---QSVMNGFSASVVQLALN  301 (325)
Q Consensus       231 ~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g-~~~~~~~~~~~-s~~p---~~~~laG~---~svl~~~~~evla~af~  301 (325)
                      ++++.  ...+|++|||++||+|.+||+.| | ++++++++++. +++|   ..++|+|.   .+||++||++||++||+
T Consensus        98 ~~~~~--~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~  175 (434)
T 2ea7_A           98 NPDSR--DSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFD  175 (434)
T ss_dssp             CSSCE--EEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHT
T ss_pred             eCCCC--EEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhhcCCHHHHHHHhC
Confidence            98653  45679999999999999999776 6 67899988764 5554   45678885   36999999999999999


Q ss_pred             CCHHHHHHhh-hc
Q 020545          302 VNEEFLKFFK-EN  313 (325)
Q Consensus       302 v~~~~v~~l~-~~  313 (325)
                      ++++++++|+ +.
T Consensus       176 v~~~~v~~l~~~~  188 (434)
T 2ea7_A          176 SDFKEINRVLFGE  188 (434)
T ss_dssp             SCHHHHHHHHTCC
T ss_pred             CCHHHHHhhhhcc
Confidence            9999999999 54

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.91  E-value=2.3e-24  Score=210.40  Aligned_cols=155  Identities=14%  Similarity=0.227  Sum_probs=125.9

Q ss_pred             CCceeeeecCCCCCeeccCCeEEEEEcC--CCCccccc-ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEe
Q 020545          155 ANLMVNNFANFPADFCVKKAGMVTSFTG--SNFPFLEQ-VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG  231 (325)
Q Consensus       155 ~~~~~~nl~~~~p~~~~~~gG~~~~~~~--~~~p~L~~-~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~  231 (325)
                      +++|.|...+-+..+ .+++|+++.|+.  .+.+.|+| .++++++++|+|||+.+|| |++|+||.||++|++++++++
T Consensus         4 ~~p~~f~~~~f~~~~-~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~   81 (418)
T 3s7i_A            4 NNPFYFPSRRFSTRY-GNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVAN   81 (418)
T ss_dssp             CCTTEECGGGEEEEE-ECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEEC
T ss_pred             CCCcccccccccceE-EcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEe
Confidence            356677655544444 457899999964  22466776 3689999999999999999 599999999999999999999


Q ss_pred             CCCceEEeEEecCccEEEECCccEEEEEc-CC-CCEEEEEE-eCCCCC---ceeeecCcc---ccccCCCHHHHHHHcCC
Q 020545          232 LNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GP-EGIECFSI-TTSTRP---ALGKLGGKQ---SVMNGFSASVVQLALNV  302 (325)
Q Consensus       232 p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~-~~~~~~~~-~~s~~p---~~~~laG~~---svl~~~~~evla~af~v  302 (325)
                      +++.  ..++|++||||+||+|++||+.| ++ +.+.++.+ +++++|   ..++|+|..   ++|++||++||++||++
T Consensus        82 ~~~~--~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~~s~~~gf~~evLa~af~v  159 (418)
T 3s7i_A           82 GNNR--KSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNA  159 (418)
T ss_dssp             SSCE--EEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSCCCGGGGSCHHHHHHHHTS
T ss_pred             cCCE--EEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcchhHHhhcCCHHHHHHHHCc
Confidence            9764  45689999999999999999877 54 56777765 444555   456788864   79999999999999999


Q ss_pred             CHHHHHHhhhc
Q 020545          303 NEEFLKFFKEN  313 (325)
Q Consensus       303 ~~~~v~~l~~~  313 (325)
                      +++++++|+..
T Consensus       160 ~~~~v~kl~~~  170 (418)
T 3s7i_A          160 EFNEIRRVLLE  170 (418)
T ss_dssp             CHHHHHHHTTS
T ss_pred             CHHHHHhhhcc
Confidence            99999999854

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.91  E-value=5.8e-24  Score=209.45  Aligned_cols=162  Identities=14%  Similarity=0.157  Sum_probs=133.4

Q ss_pred             CceeeeecCCCCCeeccCCeEEEEEcC--CCCccccccc-ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeC
Q 020545          156 NLMVNNFANFPADFCVKKAGMVTSFTG--SNFPFLEQVG-LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL  232 (325)
Q Consensus       156 ~~~~~nl~~~~p~~~~~~gG~~~~~~~--~~~p~L~~~g-is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p  232 (325)
                      +++.|...+.++.+. .++|+++.++.  .+.|.|++++ +++++++|+|||++.|| |++++||.||++|+++++++++
T Consensus        47 ~p~vf~~~~~~~~i~-~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~  124 (445)
T 2cav_A           47 NPYLFRSNKFLTLFK-NQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP  124 (445)
T ss_dssp             CTTEECGGGEEEEEE-ETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             CCeEEchhhcCceEE-cCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeC
Confidence            456777766544443 46899999876  3456898887 99999999999999999 6899999999999999999998


Q ss_pred             CCceEEeEEecCccEEEECCccEEEEEc-C-CCCEEEEEEeC-CCCC---ceeeecCcc---ccccCCCHHHHHHHcCCC
Q 020545          233 NAKLVLDSEVEAGQLLVVPRCFVVAIIA-G-PEGIECFSITT-STRP---ALGKLGGKQ---SVMNGFSASVVQLALNVN  303 (325)
Q Consensus       233 ~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g-~~~~~~~~~~~-s~~p---~~~~laG~~---svl~~~~~evla~af~v~  303 (325)
                      ++.  ...+|++||++++|+|.+||+.| | +++++++.+++ +++|   ..++|+|..   +||+++|++||+++|+++
T Consensus       125 ~~~--~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~~~~~~~~~~~vLa~af~v~  202 (445)
T 2cav_A          125 DGR--DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSP  202 (445)
T ss_dssp             TEE--EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSC
T ss_pred             CCC--EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCchhhhhhcCCHHHHHHHhCCC
Confidence            764  45689999999999999999766 6 67899887766 4445   356788863   899999999999999999


Q ss_pred             HHHHHHhhhcc-CCceEec
Q 020545          304 EEFLKFFKENV-ATSEILI  321 (325)
Q Consensus       304 ~~~v~~l~~~~-~~~~i~~  321 (325)
                      ++++++|+..+ +...|+.
T Consensus       203 ~~~v~~l~~~~~~~g~Iv~  221 (445)
T 2cav_A          203 YDEIEQTLLQEEQEGVIVK  221 (445)
T ss_dssp             HHHHHHHTTSCCSSSSEEE
T ss_pred             HHHHHhhhcccCCCCcEEE
Confidence            99999999644 4455664

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.91  E-value=8.1e-24  Score=207.04  Aligned_cols=155  Identities=16%  Similarity=0.225  Sum_probs=127.8

Q ss_pred             Cceeee-ecCCCCCeeccCCeEEEEEcC--CCCccccccc-ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEe
Q 020545          156 NLMVNN-FANFPADFCVKKAGMVTSFTG--SNFPFLEQVG-LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG  231 (325)
Q Consensus       156 ~~~~~n-l~~~~p~~~~~~gG~~~~~~~--~~~p~L~~~g-is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~  231 (325)
                      +++.|. ..+.++.+ ..++|+++.++.  .+.+.|++++ +++++++|+||++++|| |++|+||.||++|++++++++
T Consensus         9 ~p~~f~~~~~~~~~~-~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~   86 (416)
T 1uij_A            9 NPFYFRSSNSFQTLF-ENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVN   86 (416)
T ss_dssp             CTTEECGGGSEEEEE-ECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEEC
T ss_pred             CCeEecccccccceE-EcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEE
Confidence            456666 44444444 357999999754  3447889887 99999999999999999 689999999999999999999


Q ss_pred             CCCceEEeEEecCccEEEECCccEEEEEc-C-CCCEEEEEEeC-CCCC---ceeeecCcc---ccccCCCHHHHHHHcCC
Q 020545          232 LNAKLVLDSEVEAGQLLVVPRCFVVAIIA-G-PEGIECFSITT-STRP---ALGKLGGKQ---SVMNGFSASVVQLALNV  302 (325)
Q Consensus       232 p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g-~~~~~~~~~~~-s~~p---~~~~laG~~---svl~~~~~evla~af~v  302 (325)
                      +++  ....+|++||+++||+|.+||+.| | +++++++.++. +++|   ..++|+|..   +||++||++||++||++
T Consensus        87 ~~~--~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v  164 (416)
T 1uij_A           87 NDD--RDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHS  164 (416)
T ss_dssp             SSC--EEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTS
T ss_pred             CCC--CeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcccchhhhcCCHHHHHHHhCc
Confidence            954  345689999999999999999766 4 78899988875 4454   456788754   69999999999999999


Q ss_pred             CHHHHHHhh-hcc
Q 020545          303 NEEFLKFFK-ENV  314 (325)
Q Consensus       303 ~~~~v~~l~-~~~  314 (325)
                      +++++++|+ +.+
T Consensus       165 ~~~~v~~l~~~~~  177 (416)
T 1uij_A          165 EFEEINRVLFGEE  177 (416)
T ss_dssp             CHHHHHHHHTCTT
T ss_pred             CHHHHHhhhhccc
Confidence            999999999 555

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.88  E-value=4e-23  Score=156.59  Aligned_cols=77  Identities=16%  Similarity=0.295  Sum_probs=72.2

Q ss_pred             eeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc
Q 020545          158 MVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK  235 (325)
Q Consensus       158 ~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~  235 (325)
                      .+|||.+++|++.| ..|+++.+++.++|+|+++|||+++++|.+|||+.|||||+|+||+||++|+++++||+++|+
T Consensus         2 ~pfnl~~~~p~~~n-~~G~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g~   78 (79)
T 1dgw_X            2 KPFNLRSRDPIYSN-NYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQ   78 (79)
T ss_dssp             CCEETTSSCCSEEC-SSEEEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC--
T ss_pred             CccccccCCCCccC-CCCcEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCCC
Confidence            57999999999876 479999999999999999999999999999999999999999999999999999999999885

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.86  E-value=5.1e-21  Score=183.25  Aligned_cols=154  Identities=16%  Similarity=0.251  Sum_probs=131.7

Q ss_pred             ceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce
Q 020545          157 LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL  236 (325)
Q Consensus       157 ~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~  236 (325)
                      .+.|++.+.++...  .||+++.++..++|.+.  ++++.+++|.||++..||||+++.|+.||++|++++++++++|+.
T Consensus        20 ~~~~~~~~~~~~~~--~~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~   95 (361)
T 2vqa_A           20 AFTYAFSKTPLVLY--DGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV   95 (361)
T ss_dssp             CSEECGGGSCCEEE--TTEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE
T ss_pred             ceEEEcccCCceec--CCceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE
Confidence            58999988877543  78999999999999987  469999999999999999999999999999999999999988743


Q ss_pred             EEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccC
Q 020545          237 VLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA  315 (325)
Q Consensus       237 ~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~  315 (325)
                      . ..+|++||+++||+|.+|+..| ++++++++.+++..++......+.+++|+++|.++|+++|+++.+.+++|.+.+.
T Consensus        96 ~-~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~  174 (361)
T 2vqa_A           96 E-IADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQV  174 (361)
T ss_dssp             E-EEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESSTTCCTTSSEEHHHHHHTSCHHHHHHHHTCCHHHHTTSCSSCC
T ss_pred             E-EEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCccccceecHhHHHHhCCHHHHHHHhCcCHHHHHhccccCc
Confidence            2 2579999999999999999776 6688999999888765421111236999999999999999999999999987654

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.85  E-value=1.7e-20  Score=180.14  Aligned_cols=219  Identities=16%  Similarity=0.133  Sum_probs=145.3

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCC
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRA   86 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~   86 (325)
                      +....-+|+++..|+.||++|+ |.++.|  ++      + ...+++||+|+||+|..|++.|.++++++++++.+..-.
T Consensus       109 PG~~~~~H~H~~~e~~yVl~G~-g~~t~v--~g------~-~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~p~~  178 (354)
T 2d40_A          109 PGEVAPSHRHNQSALRFIVEGK-GAFTAV--DG------E-RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLV  178 (354)
T ss_dssp             TTCEEEEEEESSCEEEEEEECS-SCEEEE--TT------E-EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECHHHH
T ss_pred             CCCCcCCeecCcceEEEEEEEE-EEEEEE--CC------E-EEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECchhH
Confidence            3344556766788999999999 988666  32      3 578999999999999999999999999999988753110


Q ss_pred             CCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCC-
Q 020545           87 YVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANF-  165 (325)
Q Consensus        87 ~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~-  165 (325)
                      .      .  | | -.+...++.++...  ..+++...++...    .++.....  +.  ...|     .+.|++... 
T Consensus       179 ~------~--l-~-~~~~~~~~~~~~~~--~~p~~~~~~~~~~----~~~p~~~~--~~--~~sp-----~~~y~~~~~~  233 (354)
T 2d40_A          179 N------I--L-G-CGFAEDYPEEQQPV--TRKEGDYLPRYAA----NMLPLRHQ--TG--NSSP-----IFNYRYDRSR  233 (354)
T ss_dssp             H------H--H-T-CCCEEECC--CCCC--CSCTTTHHHHHSS----SEECSSCC--CC--SSCS-----CCEECHHHHH
T ss_pred             h------h--c-C-ceeeecCccccCcC--cCCcchhhhhhcc----CCCCcccc--cc--CCCc-----ceeccHHHHH
Confidence            0      0  0 1 01222334433221  1222222233221    13322220  00  0011     245555322 


Q ss_pred             ----------CCCeeccCCeEEEEEcCC-CCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC
Q 020545          166 ----------PADFCVKKAGMVTSFTGS-NFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA  234 (325)
Q Consensus       166 ----------~p~~~~~~gG~~~~~~~~-~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g  234 (325)
                                +++.  ..|+.++.+++. ..+.+.+  +++....|.||++..||||+++ +|.||++|+|+++|   +|
T Consensus       234 ~~l~~~~~~~~~~~--~~G~~~~~~np~t~~~~~~t--i~~~~~~l~pG~~~~~H~h~~~-ev~~v~~G~g~~~v---~~  305 (354)
T 2d40_A          234 EVLHDLTRLGDADE--WDGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVARTTDS-TIYHVVEGSGQVII---GN  305 (354)
T ss_dssp             HHHHHHHTTSCCBT--TTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEESSC-EEEEEEEEEEEEEE---TT
T ss_pred             HHHHhhhhccccCC--CCCeEEEEeCCCcCCCCCCc--ceeEEEEECCCCCCCceecCCc-EEEEEEeCeEEEEE---CC
Confidence                      2332  257788888854 5777775  5777889999999999999988 99999999999999   44


Q ss_pred             ceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeC
Q 020545          235 KLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       235 ~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~  272 (325)
                       +.+  ++++||+++||++..|...| ++++.+|.+.+
T Consensus       306 -~~~--~~~~GD~~~vP~~~~H~~~n-~e~~~l~~~~d  339 (354)
T 2d40_A          306 -ETF--SFSAKDIFVVPTWHGVSFQT-TQDSVLFSFSD  339 (354)
T ss_dssp             -EEE--EEETTCEEEECTTCCEEEEE-EEEEEEEEEES
T ss_pred             -EEE--EEcCCCEEEECCCCeEEEEe-CCCEEEEEEcC
Confidence             444  59999999999999999777 36688887753

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.77  E-value=1.4e-18  Score=134.88  Aligned_cols=85  Identities=21%  Similarity=0.293  Sum_probs=78.5

Q ss_pred             eEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCC-CCceeeecC-ccccccCCCHHHHHHHcCCCHHHHHHhhhc
Q 020545          236 LVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTST-RPALGKLGG-KQSVMNGFSASVVQLALNVNEEFLKFFKEN  313 (325)
Q Consensus       236 ~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~-~p~~~~laG-~~svl~~~~~evla~af~v~~~~v~~l~~~  313 (325)
                      +.++.+|++|||++|||||+.++.|++ +++|++|.+++ ++..++||| ++|+|++||.++++.||+++.+++++|+.+
T Consensus         4 ~~~~~~l~~G~v~vVPq~~~v~~~A~~-~le~v~F~tna~~~~~~~LAG~~~Svl~~l~~evla~aF~~s~ee~~~l~~~   82 (93)
T 1dgw_Y            4 RRYAATLSEGDIIVIPSSFPVALKAAS-DLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLEN   82 (93)
T ss_dssp             EEEEEEECTTCEEEECTTCCEEEEESS-SEEEEEEEESCTTCCEEESSSSTTBSTTTSCHHHHHHHSSSCTHHHHHHTTS
T ss_pred             chhhceecCCcEEEECCCCceeEEecC-CeEEEEEEecCCCCeeeeccCCcccHHHhCCHHHHHHHcCCCHHHHHHHHhc
Confidence            467889999999999999999999986 69999998887 889999999 999999999999999999999999999999


Q ss_pred             cCCceEec
Q 020545          314 VATSEILI  321 (325)
Q Consensus       314 ~~~~~i~~  321 (325)
                      |+++.|+.
T Consensus        83 q~e~~~~~   90 (93)
T 1dgw_Y           83 QKESYFVD   90 (93)
T ss_dssp             CCCCSEEC
T ss_pred             CCCceecc
Confidence            98876654

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.77  E-value=1e-18  Score=168.82  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=128.2

Q ss_pred             ceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce
Q 020545          157 LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL  236 (325)
Q Consensus       157 ~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~  236 (325)
                      .++|++.+.++...  .+|+++.++..++|.++  ++++.+++|.||++..||||+ +.|+.||++|++++++++.+|++
T Consensus        47 ~~~~~~~~~~~~~~--~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g~~  121 (385)
T 1j58_A           47 NMKFSFSDTHNRLE--KGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRS  121 (385)
T ss_dssp             CCEECGGGSCCEEE--TTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCE
T ss_pred             ceEEEcccCCcccc--CCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCCcE
Confidence            37899998888643  68999999999999988  689999999999999999998 89999999999999999987754


Q ss_pred             EEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhcc
Q 020545          237 VLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENV  314 (325)
Q Consensus       237 ~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~  314 (325)
                       +...|++||+++||+|.+|+..|.+++++++.+++...+....-....++|..+|.++|+++|+++.+.+++|...+
T Consensus       122 -~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~evla~~~~vs~~~~~~l~~~~  198 (385)
T 1j58_A          122 -FIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKE  198 (385)
T ss_dssp             -EEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSC
T ss_pred             -EEEEeCCCCEEEECCCCeEEEEECCCCEEEEEEECCCCccccchhhhhhhhhcccHHHHHHHhCCCHHHHHhccccc
Confidence             33479999999999999999777445688888888776542221112689999999999999999999998886643

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.74  E-value=3.2e-16  Score=147.86  Aligned_cols=232  Identities=9%  Similarity=0.044  Sum_probs=134.1

Q ss_pred             eeeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCC
Q 020545            9 IIVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAY   87 (325)
Q Consensus         9 ~~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~   87 (325)
                      ...-+|++. ..|+.||++|+ +.+.+   ++      + .+.|++||++++|+|.+|.+.|.++ +++++++++     
T Consensus        57 ~~~~~h~H~~~~e~~~Vl~G~-~~~~~---~~------~-~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~~~~~~-----  119 (337)
T 1y3t_A           57 DAFPLHVHKDTHEGILVLDGK-LELTL---DG------E-RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYTM-----  119 (337)
T ss_dssp             CEEEEEECTTCCEEEEEEESC-EEEEE---TT------E-EEEECTTCEEEECTTCCEEEEECST-TEEEEEEEE-----
T ss_pred             CCCCceeCCCceEEEEEEECE-EEEEE---CC------E-EEEECCCCEEEECCCCcEEEEECCC-CeEEEEEEC-----
Confidence            334456445 89999999999 99986   42      3 4789999999999999999999987 688888874     


Q ss_pred             CCCcceeeeeccccccccCC-ChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCccc-CCC-CCCCceeeeecC
Q 020545           88 VPGEFSYFLLTGAQGILGGF-SSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLP-HQH-GNANLMVNNFAN  164 (325)
Q Consensus        88 ~p~~~~~f~laG~~s~l~~f-~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~-~p~-~~~~~~~~nl~~  164 (325)
                       |+.+..||......+-+.. |..+..   ..+.+.+.++..  +.+..+ ...+........ ... ......++.+..
T Consensus       120 -p~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~l~~~a~--~~gv~~-~~~~~~~~~~~~~~~~~l~~~~~~~v~r~  192 (337)
T 1y3t_A          120 -KGNVAHLYSVIGNPYDHAEHPPYASE---EVSNERFAEAAA--VATIVF-LDEAKPACSAKLAELTELPDGAVPYVLES  192 (337)
T ss_dssp             -TTSSTHHHHHHSEECSCSSCCSSCCC---CCTTCTTGGGTS--SCEECC-CCCCCSSCSCEECCBCSCCSSSCCEEECT
T ss_pred             -CCCHHHHHHHhCcccccccCCCCCCc---ccCHHHHHHhHh--hccEEE-cCCCCccccccchhhhcCCCCCCCEEECC
Confidence             2334445433222222222 211000   111122222111  111111 111111111000 000 001112333332


Q ss_pred             CCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecC-CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEec
Q 020545          165 FPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVE  243 (325)
Q Consensus       165 ~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~  243 (325)
                      .........+..++.+....   .....+ +..+.+.| |+...+|||++..|+.||++|++++.+   ++ +.+  .|+
T Consensus       193 ~~~~~~~~~g~~~~~l~~~~---~~~~~~-~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i---~~-~~~--~l~  262 (337)
T 1y3t_A          193 GEGDRLLTGDQLHRIVAAQK---NTDGQF-IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DG-QEI--QLN  262 (337)
T ss_dssp             TCSEEEEETTEEEEEEECGG---GTTTSC-EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TT-EEE--EEC
T ss_pred             CCcCEEEECCcEEEEEeccc---ccCCcE-EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE---CC-EEE--EEC
Confidence            22222222456666665321   122223 44566666 677889999989999999999999987   33 333  699


Q ss_pred             CccEEEECCccEEEEEc-CCCCEEEEEEeCCCC
Q 020545          244 AGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR  275 (325)
Q Consensus       244 ~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~  275 (325)
                      +||+++||++.+|+..| ++ .+.++.+++...
T Consensus       263 ~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~  294 (337)
T 1y3t_A          263 PGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGL  294 (337)
T ss_dssp             TTCEEEECTTCCEEEEECSS-SEEEEEEEESST
T ss_pred             CCCEEEECCCCeEEEEECCC-CeEEEEEEcCcc
Confidence            99999999999998766 55 788777765443

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.72  E-value=2e-16  Score=151.41  Aligned_cols=241  Identities=10%  Similarity=-0.010  Sum_probs=140.1

Q ss_pred             cc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCc
Q 020545           13 LT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGE   91 (325)
Q Consensus        13 p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~   91 (325)
                      +| |.+..|++||++|+ +.+.+-+.++     ....+.|++||+++||+|.+|++.|.+++. ++++++.      |+.
T Consensus        65 ~H~H~~~~E~~~Vl~G~-~~~~v~~~~g-----~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~------p~~  131 (350)
T 1juh_A           65 PHIHQKHYENFYCNKGS-FQLWAQSGNE-----TQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIV------PGG  131 (350)
T ss_dssp             CEECSSCEEEEEEEESE-EEEEEEETTS-----CCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEE------SSC
T ss_pred             cccCCCceEEEEEEEEE-EEEEECCcCC-----ceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEc------Ccc
Confidence            56 44589999999999 9998854232     234789999999999999999999998876 7777764      223


Q ss_pred             ceeeeecccccccc-CCChhHHhhhcCCCH--HHHHHHhc-ccCceeEEEecCCcCCCCc-cc-CCCCCCCceeee-ec-
Q 020545           92 FSYFLLTGAQGILG-GFSSEFTGRAYNMNE--NEAKILAK-SQTGVLIIKLGQDESEKIP-LP-HQHGNANLMVNN-FA-  163 (325)
Q Consensus        92 ~~~f~laG~~s~l~-~f~~~vLa~af~v~~--~~~~~l~~-~q~~~~Iv~~~~~~~~~~~-~~-~p~~~~~~~~~n-l~-  163 (325)
                      +..||..-+. ... ......+...|+...  ...+++.. .++.+.++..+.++.+.+. .. .+...-....++ |. 
T Consensus       132 ~~~~f~~l~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~~w~~~~~~~l~~  210 (350)
T 1juh_A          132 FEDLFYYLGT-NATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPANTVWHTGANALAST  210 (350)
T ss_dssp             TTHHHHHHSE-ECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTTEESSSSCSSSSCCCCCSS
T ss_pred             HHHHHHHhcc-ccccccccccCCcccccCccccCHHHHHHHHHHcCCEeccccCChhHhhccccccCCccccCcccccCC
Confidence            4455432111 111 111333344554443  45566654 3444555544443322111 00 000001123455 32 


Q ss_pred             CCCCCeeccCCeEEE---------EEcCCCCcccccccceEEEEEecCC--CccCCeecCCCCEEEEEEeCcEEEEEEeC
Q 020545          164 NFPADFCVKKAGMVT---------SFTGSNFPFLEQVGLSCTILKLDAN--AMLSPTYTADSVQVFYVVKGSGKAQIVGL  232 (325)
Q Consensus       164 ~~~p~~~~~~gG~~~---------~~~~~~~p~L~~~gis~~~v~l~pg--~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p  232 (325)
                      ..+|-+..++-|.-.         .-.-.+.+..+....++..+++.++  |...|+|+...++++||++|++++++-+.
T Consensus       211 ~~~p~~~~~~~g~~~~~~~~g~v~~~~l~~~~~~~~~~f~~~~i~~~~~~~g~~~~~h~~~~~~~~~vleG~~~i~i~g~  290 (350)
T 1juh_A          211 AGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDY  290 (350)
T ss_dssp             TTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETTS
T ss_pred             CCCceEECCCccchhhcccCCcEEEEEEEeCCcCceeEEEEEEEeeccccCCCCCCcccCCCcEEEEEEeeEEEEEECCe
Confidence            344554222222211         1111223444544679999999884  56667776789999999999999998642


Q ss_pred             CCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeC
Q 020545          233 NAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       233 ~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~  272 (325)
                         +.  .+|++||+++||+|.+|...+...-..++.+.+
T Consensus       291 ---~~--~~l~~Gd~~~iPag~~h~~~~~~~~~~~l~~~~  325 (350)
T 1juh_A          291 ---AA--TELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSS  325 (350)
T ss_dssp             ---CC--EEECTTCEEEECTTCCEEEEESSSSEEEEEEEE
T ss_pred             ---EE--EEeCCCCEEEECCCCCEEEEecCCeEEEEEEec
Confidence               22  369999999999999999887544466666554

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.69  E-value=3.5e-15  Score=136.90  Aligned_cols=175  Identities=15%  Similarity=0.188  Sum_probs=118.7

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCccee
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY   94 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~   94 (325)
                      |....|+.||++|+ +.+.+   ++      + .+.|++||.+++|+|.+|.+.|.++++++++++....   .+     
T Consensus        78 ~~~~ee~~~Vl~G~-l~~~~---~~------~-~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v~~~~---~~-----  138 (261)
T 1rc6_A           78 GEGIETFLYVISGN-ITAKA---EG------K-TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRY---VP-----  138 (261)
T ss_dssp             CTTEEEEEEEEESE-EEEEE---TT------E-EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEEC---CC-----
T ss_pred             CCCceEEEEEEEeE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEecc---cc-----
Confidence            34567999999999 98887   53      3 5899999999999999999999999999999886311   11     


Q ss_pred             eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccCC
Q 020545           95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKA  174 (325)
Q Consensus        95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~g  174 (325)
                        +.       +.                      .....+.+...                        .++......+
T Consensus       139 --~~-------g~----------------------~p~~~v~~~~~------------------------~~~~~~~~~~  163 (261)
T 1rc6_A          139 --VE-------GY----------------------APWLVSGNASE------------------------LERIHYEGMD  163 (261)
T ss_dssp             --CT-------TC----------------------CCCCEEEEGGG------------------------SCCC------
T ss_pred             --CC-------CC----------------------CCceEEcCHHH------------------------CCcccCCCCc
Confidence              00       10                      00112222222                        1111111111


Q ss_pred             e-EEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          175 G-MVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       175 G-~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      | .++.+...+    ...++.+..+++.||+...+|||+...|+.||++|++.+.+   +++ .+  .|++||++++|+|
T Consensus       164 ~~~~~~l~~~~----~~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i---~~~-~~--~l~~GD~i~~~~~  233 (261)
T 1rc6_A          164 DVILLDFLPKE----LGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL---DNN-WI--PVKKGDYIFMGAY  233 (261)
T ss_dssp             -CEEEECSCCS----TTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES---SSC-EE--EEETTCEEEECSS
T ss_pred             ceEEEEecCcc----cCCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE---CCE-EE--EeCCCCEEEECCC
Confidence            2 233333222    13357889999999999999999989999999999999875   232 33  6999999999999


Q ss_pred             cEEEEEc-CC-CCEEEEEEeCC
Q 020545          254 FVVAIIA-GP-EGIECFSITTS  273 (325)
Q Consensus       254 ~~h~~~~-g~-~~~~~~~~~~s  273 (325)
                      .+|+..| |+ +.++++.+.+.
T Consensus       234 ~~H~~~n~g~~~~~~~l~~~d~  255 (261)
T 1rc6_A          234 SLQAGYGVGRGEAFSYIYSKDC  255 (261)
T ss_dssp             EEEEEEEC----CEEEEEEEEC
T ss_pred             CcEEeEeCCCCcCEEEEEEecC
Confidence            9998666 77 78888766543

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.67  E-value=2.5e-16  Score=139.36  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=91.2

Q ss_pred             ccceeecccc-CCCCeEEEEEeCCeEEEEEEcCC---CCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            6 YVHIIVCLTE-NDLHVIPIIIPCELGVAGMVLPN---DQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         6 ~~~~~~~p~h-~~a~ei~yV~~G~~g~~~~v~~~---~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .+.....||+ ++++|+.||++|+ +.+++++.+   +     +.+.+.|++||+++||+|.+||+.|.+++++++++++
T Consensus        80 ~pg~~~~~H~H~~~~E~~~Vl~G~-~~v~~~~~~~~~~-----~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~  153 (201)
T 1fi2_A           80 APGGTNPPHIHPRATEIGMVMKGE-LLVGILGSLDSGN-----KLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSF  153 (201)
T ss_dssp             CTTCEEEEEECTTCCEEEEEEESE-EEEEEECCGGGTT-----CEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CCCCCCCCeECCCCCEEEEEEeCE-EEEEEEcCCCCCC-----eEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEE
Confidence            3455667884 4578999999999 999998763   3     4446899999999999999999999999999999998


Q ss_pred             ecCCCCCCCcceeeeeccccccccC---CChhHHhhhcCCCHHHHHHHhccc
Q 020545           82 ETSRAYVPGEFSYFLLTGAQGILGG---FSSEFTGRAYNMNENEAKILAKSQ  130 (325)
Q Consensus        82 ~~~~~~~p~~~~~f~laG~~s~l~~---f~~~vLa~af~v~~~~~~~l~~~q  130 (325)
                         +..+|+.   ..++  .++|+.   +++++|+++|+++.+++++|+++.
T Consensus       154 ---~~~~p~~---~~~~--~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~  197 (201)
T 1fi2_A          154 ---NSQNPGI---VFVP--LTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF  197 (201)
T ss_dssp             ---SSSCCCC---EEHH--HHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHS
T ss_pred             ---CCCCCCe---Eehh--hHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhh
Confidence               3445653   3344  368876   999999999999999999998764

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.63  E-value=7.4e-14  Score=129.08  Aligned_cols=173  Identities=14%  Similarity=0.143  Sum_probs=122.0

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCccee
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY   94 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~   94 (325)
                      |....|+.||++|+ ..+.+   ++      + .+.|++||.+++|+|.+|.+.|.++++++++++....   .+     
T Consensus        81 ~~~~ee~~~Vl~G~-l~~~~---~~------~-~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v~~~y---~~-----  141 (274)
T 1sef_A           81 GDGIQTLVYVIDGR-LRVSD---GQ------E-THELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRY---QP-----  141 (274)
T ss_dssp             BTTEEEEEEEEESE-EEEEC---SS------C-EEEEETTEEEEECTTSCCEEEESSSSCEEEEEEEEEC---CC-----
T ss_pred             CCCceEEEEEEEeE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEeee---ee-----
Confidence            44568999999999 88877   43      3 5789999999999999999999999999998876311   10     


Q ss_pred             eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCe-eccC
Q 020545           95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADF-CVKK  173 (325)
Q Consensus        95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~-~~~~  173 (325)
                        +.       +           .           .....+++.+.                        .++.. ....
T Consensus       142 --~~-------g-----------~-----------~p~~~v~~~~d------------------------~~~~~~~~~~  166 (274)
T 1sef_A          142 --LA-------G-----------H-----------QPYKVVGSIHD------------------------QQPEEYEGMT  166 (274)
T ss_dssp             --CT-------T-----------C-----------CCCCEEEEGGG------------------------SCCEEGGGCT
T ss_pred             --CC-------C-----------C-----------CCcceeCChHH------------------------CCccccCCCC
Confidence              00       0           0           11122333322                        11111 1113


Q ss_pred             CeEEEEEcCCCCcccccccceEEEEEecCCCccCC-eecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545          174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSP-TYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR  252 (325)
Q Consensus       174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~P-h~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~  252 (325)
                      +..++.+.....    ..++.+..+++.||+.... |||+ ..|+.||++|++.+.+   ++ +.  ..|++||+++||+
T Consensus       167 g~~~~~l~~~~~----~~~~~~~~~~l~pg~~~~~~H~H~-~~E~~yVl~G~~~~~i---~~-~~--~~l~~GD~i~i~~  235 (274)
T 1sef_A          167 DVLLWSLLPKEF----DFDMNMHILSFEPGASHAYIETHV-QEHGAYLISGQGMYNL---DN-EW--YPVEKGDYIFMSA  235 (274)
T ss_dssp             TEEEEECSCSST----TCSEEEEEEEECTTCBCSSCBCCS-CCEEEEEEECEEEEEE---TT-EE--EEEETTCEEEECT
T ss_pred             CeEEEEeCCccc----CCCEEEEEEEECCCCccCcceecc-CeEEEEEEeCEEEEEE---CC-EE--EEECCCCEEEECC
Confidence            445555543322    1267899999999999888 9995 6799999999999986   23 33  3699999999999


Q ss_pred             ccEEEEEc-CC-CCEEEEEEeC
Q 020545          253 CFVVAIIA-GP-EGIECFSITT  272 (325)
Q Consensus       253 G~~h~~~~-g~-~~~~~~~~~~  272 (325)
                      +.+|...| ++ +.++++.+.+
T Consensus       236 ~~~H~~~n~~~~~~~~~l~~~~  257 (274)
T 1sef_A          236 YVPQAAYAVGREEPLMYVYSKD  257 (274)
T ss_dssp             TCCEEEEEECSSSCEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCEEEEEEEc
Confidence            99998666 77 7788777643

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.61  E-value=4.4e-14  Score=136.73  Aligned_cols=217  Identities=10%  Similarity=0.102  Sum_probs=128.5

Q ss_pred             eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEe-cCCCCEEEEEEeecCCCC-C
Q 020545           11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYN-NGSSDVVIVFVGETSRAY-V   88 (325)
Q Consensus        11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N-~g~~~l~~~~~~~~~~~~-~   88 (325)
                      +-+|.+...+++||++|+ |....+  ++      + ...+++||++++|+|..|.+.| .|+++++++|+.|..-.. .
T Consensus       136 ~~~HrH~~~ev~~IleG~-G~~t~v--~G------~-~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l~v~d~Pl~~~l  205 (394)
T 3bu7_A          136 AGAHRHAASALRFIMEGS-GAYTIV--DG------H-KVELGANDFVLTPNGTWHEHGILESGTECIWQDGLDIPLTNCL  205 (394)
T ss_dssp             CCCEEESSCEEEEEEECS-CEEEEE--TT------E-EEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEECHHHHHHT
T ss_pred             cCCccCCcceEEEEEEee-EEEEEE--CC------E-EEEEcCCCEEEECcCCCEEEEcCCCCCCEEEEEcccchhhhhc
Confidence            344644567999999999 977555  32      3 4789999999999999999999 999999999988632100 0


Q ss_pred             CCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecC----
Q 020545           89 PGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFAN----  164 (325)
Q Consensus        89 p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~----  164 (325)
                      .-           .++...+.+. +. -.-+.....+...   .+.+...... .+.  ...|     -+.|....    
T Consensus       206 ~~-----------~f~e~~~~~~-~~-~~~~~~~~~~~~~---~~~l~p~~~~-~~~--~~sP-----~~~y~w~~~~~~  261 (394)
T 3bu7_A          206 EA-----------NFYEVHPNDY-QT-TDIPLNDSPLTYG---GPALLPQLDK-WDK--PYSP-----LLKYSWEPTYEA  261 (394)
T ss_dssp             TC-----------CCEEECTTSS-CC-CCCCTTHHHHHHC---STTEEESSCC-CCC--SSCS-----CCEECHHHHHHH
T ss_pred             Cc-----------cccccCcccc-cC-ccCCccchhhhhc---Cccccccccc-ccC--CCCC-----cEEecHHHHHHH
Confidence            10           1111111100 00 0000010011111   1112222110 000  0011     12233221    


Q ss_pred             -------CCCCeeccCCeEE-EEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce
Q 020545          165 -------FPADFCVKKAGMV-TSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL  236 (325)
Q Consensus       165 -------~~p~~~~~~gG~~-~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~  236 (325)
                             ..++   ...|.. ..+++.+= .-....+++....|.||+-..||-|+. .++.||++|+|.+.|   +|+ 
T Consensus       262 L~~~~~~~~~~---~~~~~~l~l~nP~~g-~~~~~tl~~~~~~l~PG~~~~~HrH~~-~~v~~VleG~G~~~V---~ge-  332 (394)
T 3bu7_A          262 LLNYAKASDGS---PYDGLILRYTNPQTG-GHPMLTMGASMQMLRPGEHTKAHRHTG-NVIYNVAKGQGYSIV---GGK-  332 (394)
T ss_dssp             HHHHHTTCCCB---TTTBEEEEECCTTTS-SCSSSSCEEEEEEECTTCBCCCEEESS-CEEEEEEECCEEEEE---TTE-
T ss_pred             HHHhhhccCcC---cCCceEEEEeCCCCC-CCCCCeeeEEEEEECCCCcCCCcccCC-cEEEEEEeCeEEEEE---CCE-
Confidence                   1122   112333 33343321 111225789999999999999999985 589999999997766   443 


Q ss_pred             EEeEEecCccEEEECCccEEEEEc-C-CCCEEEEEEeC
Q 020545          237 VLDSEVEAGQLLVVPRCFVVAIIA-G-PEGIECFSITT  272 (325)
Q Consensus       237 ~~~~~l~~Gdv~vvP~G~~h~~~~-g-~~~~~~~~~~~  272 (325)
                      .+  .+++||++++|.|..|...| | ++++.++.+.+
T Consensus       333 ~~--~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i~D  368 (394)
T 3bu7_A          333 RF--DWSEHDIFCVPAWTWHEHCNTQERDDACLFSFND  368 (394)
T ss_dssp             EE--EECTTCEEEECTTCCEEEEECCSSCCEEEEEEES
T ss_pred             EE--EEeCCCEEEECCCCeEEeEeCCCCCCeEEEEeeC
Confidence            33  59999999999999998655 6 67898888864

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.59  E-value=9.9e-15  Score=113.27  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=74.6

Q ss_pred             ceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcceeeeecc-ccccccCCChhHHhhhcCCCHHHH
Q 020545           45 EEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTG-AQGILGGFSSEFTGRAYNMNENEA  123 (325)
Q Consensus        45 ~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~f~laG-~~s~l~~f~~~vLa~af~v~~~~~  123 (325)
                      +....+|++|||++||+|++..+.+..  +|+++|+.. + ..++   ..+|||| ..|+|+++|.++|+.||+++.+++
T Consensus         4 ~~~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~t-n-a~~~---~~~~LAG~~~Svl~~l~~evla~aF~~s~ee~   76 (93)
T 1dgw_Y            4 RRYAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGV-N-AENN---ERNFLAGHKENVIRQIPRQVSDLTFPGSGEEV   76 (93)
T ss_dssp             EEEEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEE-S-CTTC---CEEESSSSTTBSTTTSCHHHHHHHSSSCTHHH
T ss_pred             chhhceecCCcEEEECCCCceeEEecC--CeEEEEEEe-c-CCCC---eeeeccCCcccHHHhCCHHHHHHHcCCCHHHH
Confidence            344569999999999999999999984  599999853 2 2222   5899999 899999999999999999999999


Q ss_pred             HHHhcccCceeEEEe
Q 020545          124 KILAKSQTGVLIIKL  138 (325)
Q Consensus       124 ~~l~~~q~~~~Iv~~  138 (325)
                      ++|+.+|++..|+..
T Consensus        77 ~~l~~~q~e~~~~~~   91 (93)
T 1dgw_Y           77 EELLENQKESYFVDG   91 (93)
T ss_dssp             HHHTTSCCCCSEECC
T ss_pred             HHHHhcCCCceeccC
Confidence            999999988888754

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.51  E-value=1.3e-12  Score=118.49  Aligned_cols=176  Identities=10%  Similarity=0.034  Sum_probs=117.9

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEE-eCCCCeEEEEecCCCCEEEEEEeecCC
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIP-VPLGSASWWYNNGSSDVVIVFVGETSR   85 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~-vP~G~~~~~~N~g~~~l~~~~~~~~~~   85 (325)
                      +.+.+-+|++...|+.||++|+ +.+.+   ++      + ...|++||.++ +|+|.+|.+.|.++++++++-+.....
T Consensus        43 pg~~~~~H~H~~~e~~~Vl~G~-~~~~~---~~------~-~~~l~~Gd~i~~ip~~~~H~~~n~~~~~~~~l~i~r~~~  111 (243)
T 3h7j_A           43 PHTNVEPHQHKEVQIGMVVSGE-LMMTV---GD------V-TRKMTALESAYIAPPHVPHGARNDTDQEVIAIDIKRLKA  111 (243)
T ss_dssp             TTEEEEEECCSSEEEEEEEESE-EEEEE---TT------E-EEEEETTTCEEEECTTCCEEEEECSSSCEEEEEEEECCT
T ss_pred             CCCccCCEECCCcEEEEEEEeE-EEEEE---CC------E-EEEECCCCEEEEcCCCCcEeeEeCCCCcEEEEEEeccCc
Confidence            4455667766789999999999 98887   43      3 57899999885 999999999999999988876643211


Q ss_pred             CCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCC
Q 020545           86 AYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANF  165 (325)
Q Consensus        86 ~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~  165 (325)
                      .  +. + .   .         +.                       ++..                       +.+...
T Consensus       112 ~--e~-~-~---~---------p~-----------------------g~~~-----------------------~~L~~~  129 (243)
T 3h7j_A          112 D--ET-Y-T---S---------PE-----------------------DYFL-----------------------DIFKTR  129 (243)
T ss_dssp             T--CC-C-C---C---------CT-----------------------TSEE-----------------------CCEECS
T ss_pred             c--cc-C-C---C---------ch-----------------------hhhh-----------------------hhccCc
Confidence            0  00 0 0   0         00                       0000                       000000


Q ss_pred             CCCeeccCCeEEEEEcCCCCcccccccceEEEEEecC-CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecC
Q 020545          166 PADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEA  244 (325)
Q Consensus       166 ~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~  244 (325)
                      + ...+-.   +..        +....+.+..++|.| |+...+|||+. .|+.||++|++.+.+=   + ..+  .|++
T Consensus       130 ~-~~~~~~---~~~--------~~~~~~~~~~~~~~p~g~~~~~H~H~~-~e~~~Vl~G~~~~~i~---~-~~~--~l~~  190 (243)
T 3h7j_A          130 D-LLPGME---VTF--------FVEDWVEIMLAKIPGNGGEMPFHKHRN-EQIGICIGGGYDMTVE---G-CTV--EMKF  190 (243)
T ss_dssp             C-SBTTBC---EEE--------EEETTEEEEEEEECTTTEEEEEECCSS-EEEEEECSSCEEEEET---T-EEE--EECT
T ss_pred             c-cccCcc---eee--------eccceeEEEEEEECCCCCcCCCEeCCC-cEEEEEEECEEEEEEC---C-EEE--EECC
Confidence            0 000000   000        011124567788999 99999999985 6999999999988752   2 233  5999


Q ss_pred             ccEEEECCccEEEEEc-CCCCEEEEEEeCCC
Q 020545          245 GQLLVVPRCFVVAIIA-GPEGIECFSITTST  274 (325)
Q Consensus       245 Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~  274 (325)
                      ||.+++|+|.+|...| +++.++++.++.-.
T Consensus       191 Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~  221 (243)
T 3h7j_A          191 GTAYFCEPREDHGAINRSEKESKSINIFFPP  221 (243)
T ss_dssp             TCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred             CCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence            9999999999998766 77888888777643

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.48  E-value=6.5e-13  Score=127.29  Aligned_cols=219  Identities=14%  Similarity=0.144  Sum_probs=129.1

Q ss_pred             eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      .-+|-+..++++||++|+ |....|  ++      + ...+++||++++|+|..|.+.|+|+++++++++.|..-..   
T Consensus       116 ~~~HrH~~~ev~~VleG~-G~~~~v--dG------~-~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~v~D~Pl~~---  182 (368)
T 3nw4_A          116 APEHRHSQNAFRFVVEGE-GVWTVV--NG------D-PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQ---  182 (368)
T ss_dssp             EEEEEESSCEEEECSSCE-EEEEEE--TT------E-EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEECHHHHH---
T ss_pred             cCceecccceEEEEEecc-eEEEEE--CC------E-EEEEeCCCEEEECCCCcEEeEeCCCCCeEEEEecchHHHh---
Confidence            345644567999999999 953444  43      3 4789999999999999999999999999999998632110   


Q ss_pred             cceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeec-------
Q 020545           91 EFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFA-------  163 (325)
Q Consensus        91 ~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~-------  163 (325)
                           +|- . +.+...+..+ +..-.+....=+.+..-   ..+..+...   .-...+|     -+.|...       
T Consensus       183 -----~l~-~-~~~e~~~~~~-~~~~~~~~~~~~~~~~~---~~l~P~~~~---~~~~~sP-----~~~ypw~~~~~aL~  243 (368)
T 3nw4_A          183 -----QMD-V-GFFEFGSDRV-TDYATPNFSRGERLWCH---PGLRPLSGL---QNTVASP-----IGAYRWEFTDRALT  243 (368)
T ss_dssp             -----HHT-C-CCEEECCSSC-SCCCCCSSCHHHHHHCS---TTCCCGGGC---SCCSSCS-----CCEECHHHHHHHHH
T ss_pred             -----hcC-c-eeeecccccc-cccccccCCcccchhhc---ccccccccc---CCCCCCC-----ceecCHHHHHHHHH
Confidence                 000 0 1111111100 00000000000111000   000000000   0000011     0222221       


Q ss_pred             C-------CCCCeeccCCeE-EEEEcCCC-CcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC
Q 020545          164 N-------FPADFCVKKAGM-VTSFTGSN-FPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA  234 (325)
Q Consensus       164 ~-------~~p~~~~~~gG~-~~~~~~~~-~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g  234 (325)
                      .       ..++... .|-. +..+++.+ -+.+.+  |++....|.||.-..||=|. +.++.||++|+|++.|   ++
T Consensus       244 ~~~~l~~~~~~~~~~-~g~~~~~y~NP~tg~~~~pt--i~~~~~~L~pG~~t~~hRht-~s~Vy~V~eG~G~~~I---~~  316 (368)
T 3nw4_A          244 EQLLLEDEGQPATVA-PGHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNEV-GSTVFQVFEGAGAVVM---NG  316 (368)
T ss_dssp             HHHHHHHTTCSCSSB-TTEEEEECBCTTTSSBSSSS--CEEEEEEECTTCBCCCEEES-SCEEEEEEESCEEEEE---TT
T ss_pred             hhhhhhhccCCCccc-CceEEEEEeCCCCCCCcchh--HHhheEEECCCCccCCeecc-ccEEEEEEeCcEEEEE---CC
Confidence            1       1233221 1344 56666442 345554  68889999999999999997 4599999999999988   33


Q ss_pred             ceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeC
Q 020545          235 KLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       235 ~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~  272 (325)
                       +.+  ++++||+|+||.+..|...|. +++.+|.+.+
T Consensus       317 -~~~--~w~~gD~fvvP~w~~h~~~n~-~~a~Lf~~~D  350 (368)
T 3nw4_A          317 -ETT--KLEKGDMFVVPSWVPWSLQAE-TQFDLFRFSD  350 (368)
T ss_dssp             -EEE--EECTTCEEEECTTCCEEEEES-SSEEEEEEES
T ss_pred             -EEE--EecCCCEEEECCCCcEEEEeC-CCEEEEEEeC
Confidence             345  599999999999999987665 5677777653

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.47  E-value=5.7e-12  Score=113.26  Aligned_cols=177  Identities=15%  Similarity=0.156  Sum_probs=115.3

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCC
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRA   86 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~   86 (325)
                      +..-+-+|.++.+++.||++|+ +.+.+   ++      + ...|++||++++|+|.+|.+.|..  +++++++... ..
T Consensus        46 ~G~~~~~h~h~~~~~~~Vl~G~-~~~~i---~~------~-~~~l~~Gd~~~~p~~~~H~~~a~~--~~~~l~i~~~-~~  111 (227)
T 3rns_A           46 KDEEITAEAMLGNRYYYCFNGN-GEIFI---EN------N-KKTISNGDFLEITANHNYSIEARD--NLKLIEIGEK-IG  111 (227)
T ss_dssp             TTCEEEECSCSSCEEEEEEESE-EEEEE---SS------C-EEEEETTEEEEECSSCCEEEEESS--SEEEEEEEEC-C-
T ss_pred             CCCccCccccCCCEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEECC--CcEEEEEEee-cc
Confidence            3455667766789999999999 99988   43      2 478999999999999999999864  6888877521 00


Q ss_pred             CCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCC
Q 020545           87 YVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFP  166 (325)
Q Consensus        87 ~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~  166 (325)
                        +    .+           +           +.+.++.+..                            ...|++.+..
T Consensus       112 --~----~~-----------~-----------~~~~~~~l~~----------------------------~~~~~~~d~~  135 (227)
T 3rns_A          112 --D----GN-----------M-----------ENKTLKMLES----------------------------ASAFNLAEVV  135 (227)
T ss_dssp             -----------------------------------------------------------------------CCEESGGGS
T ss_pred             --c----ch-----------h-----------hhhHhhcCCc----------------------------cccCcHHHcc
Confidence              0    00           0           0000111110                            0122222211


Q ss_pred             CCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCcc
Q 020545          167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQ  246 (325)
Q Consensus       167 p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gd  246 (325)
                      + +.  .++.....      ..++-++.+..+.+.||+-..+|||+ ..++.||++|++++.+   +|+ .  ..+++||
T Consensus       136 ~-~~--~g~~~~~~------l~~~~~~~~~~~~~~~G~~~~~H~H~-~~e~~~Vl~G~~~~~i---~g~-~--~~l~~Gd  199 (227)
T 3rns_A          136 E-YQ--EGKIVSKN------LVAKPNLVMTIMSFWKGESLDPHKAP-GDALVTVLDGEGKYYV---DGK-P--FIVKKGE  199 (227)
T ss_dssp             C-CC--TTCEEEEE------EEEETTEEEEEEEECTTCEEEEECCS-SEEEEEEEEEEEEEEE---TTE-E--EEEETTE
T ss_pred             c-cC--CCCEEEEE------EEECCCeEEEEEEECCCCccCCEECC-CcEEEEEEeEEEEEEE---CCE-E--EEECCCC
Confidence            1 11  12222111      11222567889999999999999998 6799999999999875   232 2  3699999


Q ss_pred             EEEECCccEEEEEcCCCCEEEEE
Q 020545          247 LLVVPRCFVVAIIAGPEGIECFS  269 (325)
Q Consensus       247 v~vvP~G~~h~~~~g~~~~~~~~  269 (325)
                      .+++|+|.+|+..|+.+++.++.
T Consensus       200 ~i~ip~~~~H~~~~~~~~~~~ll  222 (227)
T 3rns_A          200 SAVLPANIPHAVEAETENFKMLL  222 (227)
T ss_dssp             EEEECTTSCEEEECCSSCEEEEE
T ss_pred             EEEECCCCcEEEEeCCCCEEEEE
Confidence            99999999999877545565543

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.47  E-value=8.5e-12  Score=115.67  Aligned_cols=180  Identities=13%  Similarity=0.181  Sum_probs=119.1

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcce
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFS   93 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~   93 (325)
                      |++...|+.||++|+ +.+.+   ++      + .+.|++||.++||+|.+|.+.|.++++++++++....   .+    
T Consensus        86 h~H~~eE~~~Vl~G~-l~v~v---~g------~-~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~v~~~y---~~----  147 (278)
T 1sq4_A           86 QDPNAEAVLFVVEGE-LSLTL---QG------Q-VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHY---QK----  147 (278)
T ss_dssp             CCTTEEEEEEEEESC-EEEEE---SS------C-EEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEEEC---CC----
T ss_pred             cCCCceEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCcEEEEECCCCCEEEEEEEecc---cc----
Confidence            435678999999999 99888   43      3 4789999999999999999999999999998886311   10    


Q ss_pred             eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccC
Q 020545           94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKK  173 (325)
Q Consensus        94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~  173 (325)
                         +.       +.+                     +.+.++-....  ...    .+        +      |+.   .
T Consensus       148 ---~~-------g~~---------------------~p~~~vgn~~d--i~~----~~--------~------~~~---~  173 (278)
T 1sq4_A          148 ---VD-------GVP---------------------LPEAFVTNEQD--IQP----LV--------M------PDT---E  173 (278)
T ss_dssp             ---CT-------TCC---------------------CCCCEEEEGGG--SCC----EE--------C------SSG---G
T ss_pred             ---CC-------CCc---------------------CCcccccchhh--cCc----cc--------C------CCC---C
Confidence               01       111                     00111111111  000    00        0      110   0


Q ss_pred             Ce--EEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545          174 AG--MVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP  251 (325)
Q Consensus       174 gG--~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP  251 (325)
                      +.  ..+.+.+.+    ...++.+..++|.||+-...|-|..-.+..||++|++.+.+   +|+ .  .+|++||+++++
T Consensus       174 ~~~~~~r~l~p~~----~~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~-~--~~v~~GD~~~~~  243 (278)
T 1sq4_A          174 GRWSTTRFVDMSD----MRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQD-W--VEVEAGDFMWLR  243 (278)
T ss_dssp             GCEEEECSSCTTC----TTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTE-E--EEEETTCEEEEE
T ss_pred             CceeEEEEecCCC----cCCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCE-E--EEeCCCCEEEEC
Confidence            11  122222211    13368899999999998886443345689999999998774   332 3  369999999999


Q ss_pred             CccEEEEEc-CCCCEEEEEEeCCCC
Q 020545          252 RCFVVAIIA-GPEGIECFSITTSTR  275 (325)
Q Consensus       252 ~G~~h~~~~-g~~~~~~~~~~~s~~  275 (325)
                      .|-+|++.| |+++++++.+.+-++
T Consensus       244 ~~~~h~~~n~g~~~~~yl~~~d~nr  268 (278)
T 1sq4_A          244 AFCPQACYSGGPGRFRYLLYKDVNR  268 (278)
T ss_dssp             ESCCEEEECCSSSCEEEEEEEECSS
T ss_pred             CCCCEEEEcCCCCCEEEEEEEEcCC
Confidence            999999777 888999886665443

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.41  E-value=6.4e-11  Score=108.88  Aligned_cols=175  Identities=10%  Similarity=0.055  Sum_probs=120.5

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCC-CCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCc
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPN-DQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGE   91 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~-~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~   91 (325)
                      +|++...|++||++|+ ..+.+   + +     +  .+.|++||.+++|+|..|++.|.  ++++++.+...   ..|  
T Consensus        85 ~~~h~~EEfiyVleG~-l~l~l---~~g-----~--~~~L~~Gds~y~p~~~~H~~~N~--~~Ar~l~V~k~---y~~--  146 (266)
T 4e2q_A           85 LPPQDIERLIFVVEGA-VTLTN---TSS-----S--SKKLTVDSYAYLPPNFHHSLDCV--ESATLVVFERR---YEY--  146 (266)
T ss_dssp             CCCTTEEEEEEEEEEC-EEEEC-----C-----C--CEEECTTEEEEECTTCCCEEEES--SCEEEEEEEEE---CCC--
T ss_pred             CCCCCCeEEEEEEEEE-EEEEE---CCC-----c--EEEEcCCCEEEECCCCCEEEEeC--CCEEEEEEEeE---eee--
Confidence            3566789999999999 88776   4 3     2  47899999999999999999995  57888877621   111  


Q ss_pred             ceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeec
Q 020545           92 FSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCV  171 (325)
Q Consensus        92 ~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~  171 (325)
                           +.       +                      .. ...++.-                       ..+.++.-..
T Consensus       147 -----~~-------g----------------------~~-p~~~v~~-----------------------~~dv~~~~~~  168 (266)
T 4e2q_A          147 -----LG-------S----------------------HT-TELIVGS-----------------------TDKQPLLETP  168 (266)
T ss_dssp             -----CT-------T----------------------CC-CCCEEEE-----------------------GGGSCCBCCT
T ss_pred             -----CC-------C----------------------CC-CceeeCc-----------------------HhHCCCcccC
Confidence                 00       0                      01 1223321                       1111111110


Q ss_pred             cCCeEEEEEcCCCCcccccccceEEEEEecCCCccCC-eecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545          172 KKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSP-TYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV  250 (325)
Q Consensus       172 ~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~P-h~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv  250 (325)
                      ..+-..+.+.+++.    .-++.+..++++||+.... |-|. ..+..||++|+|++.+   ++ ..  ..+++||++++
T Consensus       169 g~~~~~r~l~p~~~----~~d~~~~~~t~~PG~~~p~~e~H~-~eh~~~vL~G~g~y~l---~~-~~--~~V~~GD~i~~  237 (266)
T 4e2q_A          169 GEVFELRKLLPMSV----AYDFNIHTMDFQPGEFLNVKEVHY-NQHGLLLLEGQGIYRL---GD-NW--YPVQAGDVIWM  237 (266)
T ss_dssp             TCCSEEEESSCCST----TCSEEEEEEEECTTCBCSSCCCCS-CCEEEEEEECEEEEEE---TT-EE--EEEETTCEEEE
T ss_pred             CCcEEEEEccCccc----ccceEEEEEEECCCcCcCCceEcc-cceEEEEEeceEEEEE---CC-EE--EEecCCCEEEE
Confidence            02234566666653    3468999999999999986 6665 5599999999998873   23 22  36999999999


Q ss_pred             CCccEEEEEc-CCCCEEEEEEeCCC
Q 020545          251 PRCFVVAIIA-GPEGIECFSITTST  274 (325)
Q Consensus       251 P~G~~h~~~~-g~~~~~~~~~~~s~  274 (325)
                      |.+.+|++.| |+++++++--.+.+
T Consensus       238 ~~~~~h~~~n~G~e~~~yl~ykd~n  262 (266)
T 4e2q_A          238 APFVPQWYAALGKTRSRYLLYKDVN  262 (266)
T ss_dssp             CTTCCEEEEEESSSCEEEEEEEECS
T ss_pred             CCCCcEEEEeCCCCCEEEEEEcccc
Confidence            9999999777 78999988765543

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.31  E-value=4e-10  Score=102.44  Aligned_cols=174  Identities=12%  Similarity=0.118  Sum_probs=116.8

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcceeeee
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLL   97 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~f~l   97 (325)
                      ..|+.||++|+ +.+.+   ++      + .+.|++||.+++|+|.+|.+.|.  ++++++.+...   ..|       +
T Consensus        68 ~ee~~~Vl~G~-~~~~~---~~------~-~~~l~~Gd~~~~p~~~~H~~~n~--~~~~~l~v~~~---y~~-------~  124 (246)
T 1sfn_A           68 YQRFAFVLSGE-VDVAV---GG------E-TRTLREYDYVYLPAGEKHMLTAK--TDARVSVFEKP---YQT-------V  124 (246)
T ss_dssp             SEEEEEEEEEE-EEEEC---SS------C-EEEECTTEEEEECTTCCCEEEEE--EEEEEEEEEEC---CCC-------B
T ss_pred             eeEEEEEEECE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEeC--CCEEEEEEEee---ecc-------C
Confidence            67899999999 88877   43      3 58899999999999999999998  67777766521   111       1


Q ss_pred             ccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccCCeEE
Q 020545           98 TGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKKAGMV  177 (325)
Q Consensus        98 aG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~gG~~  177 (325)
                      .       +.+                     .. ..++.-..    ..   .+      ..  +    ++   ..|-..
T Consensus       125 ~-------g~~---------------------~p-~~~vg~~~----dv---~~------~~--~----~~---~~g~~~  153 (246)
T 1sfn_A          125 E-------GVQ---------------------AP-GVYWGNER----EN---PG------YP--F----EG---DDHLIA  153 (246)
T ss_dssp             T-------TBC---------------------CC-CCEEEETT----TC---CC------EE--T----TS---CTTEEE
T ss_pred             C-------CCc---------------------CC-ceeeccHh----hC---Cc------cc--c----CC---CCCeEE
Confidence            1       110                     00 11221111    00   00      00  0    00   122233


Q ss_pred             EEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEE
Q 020545          178 TSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVA  257 (325)
Q Consensus       178 ~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~  257 (325)
                      +.+.+.+.    ..++.+..++|.||+-...|.|....+..||++|++.+.+   +| +.+  +|++||.++++.+.+|+
T Consensus       154 r~l~p~~~----~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~-~~~--~l~~GD~~~~~~~~pH~  223 (246)
T 1sfn_A          154 RKLLPDEP----AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE-NYY--PVTAGDIIWMGAHCPQW  223 (246)
T ss_dssp             EECSCCCT----TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT-EEE--EEETTCEEEECTTCCEE
T ss_pred             EEeCCCcc----CCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CC-EEE--EcCCCCEEEECCCCCEE
Confidence            44443222    3367899999999998887554457799999999999886   33 333  69999999999999998


Q ss_pred             EEc-CCCCEEEEEEeCCCC
Q 020545          258 IIA-GPEGIECFSITTSTR  275 (325)
Q Consensus       258 ~~~-g~~~~~~~~~~~s~~  275 (325)
                      +.| |+++++++.+.+-++
T Consensus       224 ~~n~g~~~~~yl~~kd~~r  242 (246)
T 1sfn_A          224 YGALGRNWSKYLLYKDMNR  242 (246)
T ss_dssp             EEEESSSCEEEEEEEECSS
T ss_pred             EEcCCCCCEEEEEEEeccc
Confidence            766 889999998876543

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.11  E-value=4.5e-10  Score=95.32  Aligned_cols=147  Identities=10%  Similarity=0.078  Sum_probs=95.2

Q ss_pred             ceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC--
Q 020545          157 LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA--  234 (325)
Q Consensus       157 ~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g--  234 (325)
                      ..+.++.+.++......|.+.+.+........  -++.+.++++.||+...+|||+ ..|+.||++|++++.+-+.++  
T Consensus         7 ~~v~~~~~~~~~~~~~~G~~~~~l~~~~~~g~--~~~~~~~~~~~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~~~~   83 (163)
T 1lr5_A            7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKY   83 (163)
T ss_dssp             CSEEEGGGSCCBCTTCTTEEEEEEECHHHHCC--SSEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSS
T ss_pred             cEecChHHCChhhccCCCcceEEEeccccCCC--CcEEEEEEEECCCCcCCCeECC-CCeEEEEEeCEEEEEECCccccc
Confidence            45667777666544335566655532211122  2578899999999999999995 679999999999998866321  


Q ss_pred             -ceEEeEEecCccEEEECCccEEEEEc-C-CCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHH
Q 020545          235 -KLVLDSEVEAGQLLVVPRCFVVAIIA-G-PEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKF  309 (325)
Q Consensus       235 -~~~~~~~l~~Gdv~vvP~G~~h~~~~-g-~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~  309 (325)
                       ...-...|++||+++||+|.+|...| + +++++++.+........++.   .+++..+....+..-+.++++.+++
T Consensus        84 ~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  158 (163)
T 1lr5_A           84 PGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLY---DDWSMPHTAAVLKFPFVWDEDCFEA  158 (163)
T ss_dssp             CCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEESSSCCEEEE---SSTTSCGGGCEEESSCTTTHHHHHH
T ss_pred             cCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEECCCCcccccc---cccccCCcCccceeccccccccccc
Confidence             00113469999999999999998766 6 67888887765543332222   2343333333333345556665554

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=1.4e-09  Score=87.78  Aligned_cols=81  Identities=14%  Similarity=0.212  Sum_probs=66.4

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ++.+.++.+.||+-..+|||+...|+.||++|++.+.+-  +++ .+  .|++||++++|+|.+|...| ++++++++.+
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~~~-~~--~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v  112 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG--NGI-VT--HLKAGDIAIAKPGQVHGAMNSGPEPFIFVSV  112 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS--TTC-EE--EEETTEEEEECTTCCCEEEECSSSCEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC--CCe-EE--EeCCCCEEEECCCCEEEeEeCCCCCEEEEEE
Confidence            568889999999999999999889999999999988652  232 33  59999999999999998666 7888998888


Q ss_pred             eCCCCCc
Q 020545          271 TTSTRPA  277 (325)
Q Consensus       271 ~~s~~p~  277 (325)
                      +...++.
T Consensus       113 ~~p~~~~  119 (125)
T 3h8u_A          113 VAPGNAG  119 (125)
T ss_dssp             EESTTCC
T ss_pred             ECCCccc
Confidence            7665543

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.01  E-value=3.4e-09  Score=88.57  Aligned_cols=82  Identities=17%  Similarity=0.215  Sum_probs=66.9

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ++.+.++++.||+...+|||+...|+.||++|++++.+-+......+...|++||+++||+|.+|...| ++++++++.+
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i  121 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSI  121 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEE
Confidence            567889999999999999999888999999999999986543221233579999999999999998665 7778887776


Q ss_pred             eCC
Q 020545          271 TTS  273 (325)
Q Consensus       271 ~~s  273 (325)
                      +..
T Consensus       122 ~~~  124 (148)
T 2oa2_A          122 YAP  124 (148)
T ss_dssp             EES
T ss_pred             ECC
Confidence            644

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=98.95  E-value=8.8e-09  Score=87.07  Aligned_cols=78  Identities=14%  Similarity=0.268  Sum_probs=66.0

Q ss_pred             cceEEEEEecCCC-ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc-cEEEEEc-CCCCEEEE
Q 020545          192 GLSCTILKLDANA-MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC-FVVAIIA-GPEGIECF  268 (325)
Q Consensus       192 gis~~~v~l~pg~-~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G-~~h~~~~-g~~~~~~~  268 (325)
                      ++.+..+++.||+ ...+|||+...|+.||++|++.+.+   ++ +.  ..|++||+++||+| .+|...| ++++++++
T Consensus        45 ~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~-~~--~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l  118 (162)
T 3l2h_A           45 HMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---EN-DQ--YPIAPGDFVGFPCHAAAHSISNDGTETLVCL  118 (162)
T ss_dssp             SEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TT-EE--EEECTTCEEEECTTSCCEEEECCSSSCEEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CC-EE--EEeCCCCEEEECCCCceEEeEeCCCCCEEEE
Confidence            6789999999999 5999999999999999999999885   23 33  36999999999998 9998766 77888888


Q ss_pred             EEeCCCC
Q 020545          269 SITTSTR  275 (325)
Q Consensus       269 ~~~~s~~  275 (325)
                      .+.+...
T Consensus       119 ~v~~p~~  125 (162)
T 3l2h_A          119 VIGQRLD  125 (162)
T ss_dssp             EEEECCS
T ss_pred             EEECCCC
Confidence            7776544

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=98.94  E-value=7.1e-09  Score=79.82  Aligned_cols=78  Identities=10%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             ccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEE
Q 020545          189 EQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIEC  267 (325)
Q Consensus       189 ~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~  267 (325)
                      ..-++.+..+.+.||+-..+|||+...|+.||++|++.+.+   ++ +.  ..+++||++++|+|.+|...+ +++++.+
T Consensus        24 ~~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~-~~--~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~   97 (105)
T 1v70_A           24 QSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GE-EE--ALLAPGMAAFAPAGAPHGVRNESASPALL   97 (105)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TT-EE--EEECTTCEEEECTTSCEEEECCSSSCEEE
T ss_pred             CCCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CC-EE--EEeCCCCEEEECCCCcEEeEeCCCCCEEE
Confidence            34467899999999999999999888899999999999876   23 23  369999999999999998766 6677887


Q ss_pred             EEEeC
Q 020545          268 FSITT  272 (325)
Q Consensus       268 ~~~~~  272 (325)
                      +.+..
T Consensus        98 ~~v~~  102 (105)
T 1v70_A           98 LVVTA  102 (105)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            76653

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.93  E-value=1.1e-08  Score=89.40  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=68.5

Q ss_pred             cceEEEEEecCCCc------cCCeecC--CCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CC
Q 020545          192 GLSCTILKLDANAM------LSPTYTA--DSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GP  262 (325)
Q Consensus       192 gis~~~v~l~pg~~------~~Ph~h~--~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~  262 (325)
                      ++.+..++|.||+.      ..+|||+  +..|+.||++|++.+.+-+..|+ .....|++||+++||+|.+|...| ++
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~-~~~~~l~~GD~v~ip~g~~H~~~N~g~  144 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGD-AKWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCC-EEEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCc-EEEEEECCCcEEEECCCCeEEEEECCc
Confidence            57788889999998      7799998  46899999999999999876553 455689999999999999998665 77


Q ss_pred             CCEEEEEEeCC
Q 020545          263 EGIECFSITTS  273 (325)
Q Consensus       263 ~~~~~~~~~~s  273 (325)
                      ++++++.+...
T Consensus       145 ~~~~~l~v~~~  155 (190)
T 1x82_A          145 EPFIFLAIYPA  155 (190)
T ss_dssp             SCEEEEEEEET
T ss_pred             ccEEEEEEECC
Confidence            88888877654

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=98.87  E-value=7e-09  Score=87.85  Aligned_cols=108  Identities=9%  Similarity=0.088  Sum_probs=73.5

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC-CCCEEEEEEeecCC
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG-SSDVVIVFVGETSR   85 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g-~~~l~~~~~~~~~~   85 (325)
                      +....-+|+++..|++||++|+ +.+.+-+.+. +.+.......|++||+++||+|.+|++.|.+ +++++++++.... 
T Consensus        50 pg~~~~~H~H~~~E~~~Vl~G~-~~~~~~~~~~-~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~-  126 (163)
T 1lr5_A           50 PGQRTPIHRHSCEEVFTVLKGK-GTLLMGSSSL-KYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRP-  126 (163)
T ss_dssp             TTCBCCEEEESSCEEEEEEECC-EEEEECCSSS-SSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEESS-
T ss_pred             CCCcCCCeECCCCeEEEEEeCE-EEEEECCccc-cccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEECCC-
Confidence            3344556766789999999999 9998843210 0000124689999999999999999999999 8899999887532 


Q ss_pred             CCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHH
Q 020545           86 AYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKI  125 (325)
Q Consensus        86 ~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~  125 (325)
                         +  ...++..   +++.......+.-.+.++.+.+++
T Consensus       127 ---~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  158 (163)
T 1lr5_A          127 ---P--AKIFLYD---DWSMPHTAAVLKFPFVWDEDCFEA  158 (163)
T ss_dssp             ---S--CCEEEES---STTSCGGGCEEESSCTTTHHHHHH
T ss_pred             ---C--ccccccc---ccccCCcCccceeccccccccccc
Confidence               1  1233333   444445555555566677776665

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.86  E-value=2.3e-08  Score=78.30  Aligned_cols=78  Identities=15%  Similarity=0.233  Sum_probs=64.9

Q ss_pred             cccceEEEEEecCCCccCCe--ecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEE
Q 020545          190 QVGLSCTILKLDANAMLSPT--YTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIE  266 (325)
Q Consensus       190 ~~gis~~~v~l~pg~~~~Ph--~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~  266 (325)
                      .-++.+.++++.||+...+|  ||++..|+.||++|++++.+   ++ +.  ..|++||+++||+|.+|...| +++++.
T Consensus        18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~-~~--~~l~~Gd~~~i~~~~~H~~~~~~~~~~~   91 (113)
T 2gu9_A           18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DG-HT--QALQAGSLIAIERGQAHEIRNTGDTPLK   91 (113)
T ss_dssp             ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TT-EE--EEECTTEEEEECTTCCEEEECCSSSCEE
T ss_pred             CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CC-EE--EEeCCCCEEEECCCCcEEeEcCCCCCEE
Confidence            34678999999999998888  99889999999999999887   23 33  369999999999999998766 677788


Q ss_pred             EEEEeCC
Q 020545          267 CFSITTS  273 (325)
Q Consensus       267 ~~~~~~s  273 (325)
                      ++.+...
T Consensus        92 ~~~v~~~   98 (113)
T 2gu9_A           92 TVNFYHP   98 (113)
T ss_dssp             EEEEEES
T ss_pred             EEEEECC
Confidence            7776543

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.86  E-value=5.5e-09  Score=94.73  Aligned_cols=82  Identities=11%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             cccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEE-------eCC------C-ceEEeEEecCccEEEECCccE
Q 020545          190 QVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIV-------GLN------A-KLVLDSEVEAGQLLVVPRCFV  255 (325)
Q Consensus       190 ~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv-------~p~------g-~~~~~~~l~~Gdv~vvP~G~~  255 (325)
                      ..++++..+++.||+...||||++..|+.||++|++++.+-       +..      | .+.....+++||+++||+|.+
T Consensus        40 ~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~  119 (239)
T 2xlg_A           40 DIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYM  119 (239)
T ss_dssp             TEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEE
T ss_pred             CCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCC
Confidence            34678999999999999999999999999999999999761       111      1 133456799999999999999


Q ss_pred             EEEEc-CCCCEEE-EEEe
Q 020545          256 VAIIA-GPEGIEC-FSIT  271 (325)
Q Consensus       256 h~~~~-g~~~~~~-~~~~  271 (325)
                      |...| +++.+++ +.++
T Consensus       120 H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          120 HGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEECCSSSCEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEEE
Confidence            98666 7777777 5555

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.81  E-value=9.1e-08  Score=81.81  Aligned_cols=94  Identities=14%  Similarity=0.170  Sum_probs=72.8

Q ss_pred             CCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545          173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR  252 (325)
Q Consensus       173 ~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~  252 (325)
                      .|...+.+...+.. ....++.+..+++.||+...+|||+ ..|+.||++|++.+.+   ++ +.  ..|++||+++||+
T Consensus        37 ~g~~~~~L~~~~~g-~~~~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~~i---~~-~~--~~l~~Gd~i~ip~  108 (167)
T 3ibm_A           37 SGARRQTLVGRPAG-QEAPAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGHAEVVL---DD-RV--EPLTPLDCVYIAP  108 (167)
T ss_dssp             CCEEEEEEECTTTT-CCSSSEEEEEEEECTTCBCCCBBCS-SCEEEEEEESEEEEEE---TT-EE--EEECTTCEEEECT
T ss_pred             CCcEEEEEECCCCC-CCCCcEEEEEEEECCCCCCCCccCC-CcEEEEEEeCEEEEEE---CC-EE--EEECCCCEEEECC
Confidence            35666666555431 1233678999999999999999996 8999999999999875   23 33  3699999999999


Q ss_pred             ccEEEEEc-C-CCCEEEEEEeCCC
Q 020545          253 CFVVAIIA-G-PEGIECFSITTST  274 (325)
Q Consensus       253 G~~h~~~~-g-~~~~~~~~~~~s~  274 (325)
                      |.+|...| + ++++.++.+....
T Consensus       109 ~~~H~~~n~~~~~~~~~l~i~~~~  132 (167)
T 3ibm_A          109 HAWHQIHATGANEPLGFLCIVDSD  132 (167)
T ss_dssp             TCCEEEEEESSSCCEEEEEEEESS
T ss_pred             CCcEEEEeCCCCCCEEEEEEEeCC
Confidence            99998655 7 7888888776544

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.78  E-value=7.7e-08  Score=81.50  Aligned_cols=78  Identities=14%  Similarity=0.283  Sum_probs=65.0

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      .++.+....+.||+...+|||+. .|+.||++|++.+.+   ++ +.+  .|++||+++||+|.+|...| ++++++++.
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~v~v---~g-~~~--~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~  114 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHAH-VHAVMIHRGHGQCLV---GE-TIS--DVAQGDLVFIPPMTWHQFRANRGDCLGFLC  114 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEEEEEEEE---TT-EEE--EEETTCEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE---CC-EEE--EeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            46788999999999999999975 699999999999885   33 333  69999999999999998766 778888887


Q ss_pred             EeCCCC
Q 020545          270 ITTSTR  275 (325)
Q Consensus       270 ~~~s~~  275 (325)
                      +.....
T Consensus       115 i~~~~~  120 (156)
T 3kgz_A          115 VVNAAR  120 (156)
T ss_dssp             EEESSC
T ss_pred             EEeCCC
Confidence            775543

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.77  E-value=8e-09  Score=80.73  Aligned_cols=79  Identities=9%  Similarity=0.022  Sum_probs=64.9

Q ss_pred             ccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEE
Q 020545          189 EQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIEC  267 (325)
Q Consensus       189 ~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~  267 (325)
                      .+-.+.+.++++.||+-...|+|+...++.||++|++++..  +++.. ....+++||.+++|+|..|...| |++++++
T Consensus        13 en~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~-~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~   89 (98)
T 3lag_A           13 DNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTR-SLAQLKTGRSYARKAGVQHDVRNESTAEIVF   89 (98)
T ss_dssp             ESSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCE-ECCCBCTTCCEEECTTCEEEEBCCSSSCEEE
T ss_pred             cCCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCce-EEEEecCCcEEEEcCCCcEECEECCCCeEEE
Confidence            33457899999999999999999999999999999998764  44432 23468999999999999999766 8899999


Q ss_pred             EEE
Q 020545          268 FSI  270 (325)
Q Consensus       268 ~~~  270 (325)
                      +.+
T Consensus        90 IeV   92 (98)
T 3lag_A           90 LEI   92 (98)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.76  E-value=5.1e-08  Score=78.40  Aligned_cols=75  Identities=12%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      ++.+.++.+.||+...+|||+. .|+.||++|++++.+   ++ +.  ..|++||+++||+|.+|...+.++.+.++.++
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~---~~-~~--~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~  112 (126)
T 4e2g_A           40 NLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI---GE-ET--RVLRPGMAYTIPGGVRHRARTFEDGCLVLDIF  112 (126)
T ss_dssp             SCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE---TT-EE--EEECTTEEEEECTTCCEEEECCTTCEEEEEEE
T ss_pred             CeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE---CC-EE--EEeCCCCEEEECCCCcEEeEECCCCEEEEEEE
Confidence            5789999999999999999985 899999999999987   33 23  36999999999999999977744467777666


Q ss_pred             CC
Q 020545          272 TS  273 (325)
Q Consensus       272 ~s  273 (325)
                      .-
T Consensus       113 ~p  114 (126)
T 4e2g_A          113 SP  114 (126)
T ss_dssp             ES
T ss_pred             CC
Confidence            53

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.76  E-value=6.5e-08  Score=82.30  Aligned_cols=95  Identities=12%  Similarity=0.059  Sum_probs=73.0

Q ss_pred             cCCeEEEEEcCCCCcccccccceEEEEEecCCCcc-CCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEE
Q 020545          172 KKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAML-SPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVV  250 (325)
Q Consensus       172 ~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~-~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vv  250 (325)
                      +..|..+..-+.   .....++.+..++|.||+-. .+|||+...|+.||++|++.+.+   ++ +.  ..|++||+++|
T Consensus        25 ~~~G~~~~~l~~---~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~-~~--~~l~~GD~i~i   95 (163)
T 3i7d_A           25 AMDGRSSLRLGD---AGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQ-GE--HPMVPGDCAAF   95 (163)
T ss_dssp             GGTTEEEEEHHH---HTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TT-EE--EEECTTCEEEE
T ss_pred             cCCCeEEEEccc---CCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CC-EE--EEeCCCCEEEE
Confidence            345666555432   23333688999999999965 79999988999999999999886   23 23  36999999999


Q ss_pred             CCc--cEEEEEc-CCCCEEEEEEeCCCC
Q 020545          251 PRC--FVVAIIA-GPEGIECFSITTSTR  275 (325)
Q Consensus       251 P~G--~~h~~~~-g~~~~~~~~~~~s~~  275 (325)
                      |+|  .+|...| +++.++++.+.+...
T Consensus        96 p~~~~~~H~~~n~~~~~~~~l~v~~p~~  123 (163)
T 3i7d_A           96 PAGDPNGHQFVNRTDAPATFLVVGTRTP  123 (163)
T ss_dssp             CTTCCCCBEEECCSSSCEEEEEEEECCS
T ss_pred             CCCCCcceEEEECCCCCEEEEEEECCCC
Confidence            999  9998766 778888887776543

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.75  E-value=1.1e-07  Score=81.41  Aligned_cols=76  Identities=14%  Similarity=0.187  Sum_probs=63.9

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      .++.+..+++.||+...+|||+. .|+.||++|++.+.+   ++ +.  ..|++||+++||+|.+|...| +++++.++.
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~~~v---~g-~~--~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~  123 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQH-AHGVMILKGRGHAMV---GR-AV--SAVAPYDLVTIPGWSWHQFRAPADEALGFLC  123 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEECEEEEE---TT-EE--EEECTTCEEEECTTCCEEEECCTTSCEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE---CC-EE--EEeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            46788999999999999999985 699999999999865   33 33  369999999999999998766 778888887


Q ss_pred             EeCC
Q 020545          270 ITTS  273 (325)
Q Consensus       270 ~~~s  273 (325)
                      +...
T Consensus       124 i~~~  127 (166)
T 3jzv_A          124 MVNA  127 (166)
T ss_dssp             EEES
T ss_pred             EEcc
Confidence            7654

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.74  E-value=5.1e-08  Score=78.88  Aligned_cols=72  Identities=17%  Similarity=0.190  Sum_probs=58.7

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+++..++++||+-  .+||....|+.||++|++++++   +|+ .+  .|++||+++||+|..|...+.++.++++.+.
T Consensus        39 ~~~~~~~~~~pG~~--~~~H~~~~E~~~Vl~G~~~~~~---~g~-~~--~l~~GD~v~ip~g~~H~~~~~~~~~~~l~v~  110 (119)
T 3lwc_A           39 PITIGYGRYAPGQS--LTETMAVDDVMIVLEGRLSVST---DGE-TV--TAGPGEIVYMPKGETVTIRSHEEGALTAYVT  110 (119)
T ss_dssp             CCEEEEEEECTTCE--EEEECSSEEEEEEEEEEEEEEE---TTE-EE--EECTTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCC--cCccCCCCEEEEEEeCEEEEEE---CCE-EE--EECCCCEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            57899999999974  5788899999999999999998   343 33  6999999999999999987754556555443

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.74  E-value=4.5e-08  Score=75.67  Aligned_cols=75  Identities=11%  Similarity=0.051  Sum_probs=61.8

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ++.+.++++.||+-..+|.|+...|+.||++|++++.+=  +|.+.  ..|++||.+++|+|.+|...| ++++++++.+
T Consensus        17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~g~~~--~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP--EGSVT--SQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET--TEEEE--EEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC--CCCEE--EEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            578899999999999999999877899999999988752  22122  369999999999999999766 7788887765

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.73  E-value=1.1e-07  Score=75.66  Aligned_cols=74  Identities=15%  Similarity=0.248  Sum_probs=60.6

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ++.+.++.+.||+...+|||+ ..|+.||++|++++.+   +++. + ..|++||++++|+|.+|...+ +++++.++.+
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~~~-~-~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i   99 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTL---EDQE-P-HNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   99 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEE---TTSC-C-EEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCCEeCC-CcEEEEEEeCEEEEEE---CCEE-E-EEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            467788999999999999994 7899999999999886   2322 2 159999999999999998766 6677887776


Q ss_pred             e
Q 020545          271 T  271 (325)
Q Consensus       271 ~  271 (325)
                      .
T Consensus       100 ~  100 (117)
T 2b8m_A          100 K  100 (117)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.72  E-value=1.6e-07  Score=81.52  Aligned_cols=161  Identities=9%  Similarity=0.029  Sum_probs=95.3

Q ss_pred             cCCChhHHhhhcCCCHHHHHHHhcccC-ce---eEEEecCCcCCCCc-ccCCCC---CCCceeeeecCCCCC--eeccCC
Q 020545          105 GGFSSEFTGRAYNMNENEAKILAKSQT-GV---LIIKLGQDESEKIP-LPHQHG---NANLMVNNFANFPAD--FCVKKA  174 (325)
Q Consensus       105 ~~f~~~vLa~af~v~~~~~~~l~~~q~-~~---~Iv~~~~~~~~~~~-~~~p~~---~~~~~~~nl~~~~p~--~~~~~g  174 (325)
                      .+++.+-||+..|++..++.++-+... .-   .+.+...-=.-.+. +.....   ........-....+.  .....+
T Consensus        22 ~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  101 (198)
T 2bnm_A           22 VKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVD  101 (198)
T ss_dssp             TTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCCCCCCCBTTBCCCCGGGCCEECCSTTCST
T ss_pred             cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHEEccCCCCcccCceEEeecccccccccccCCC
Confidence            378999999999999999999987654 21   11111110000000 010000   011111111111110  111223


Q ss_pred             eEEEEEcCCCCcccccccceEEEEEecCCCccC---CeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545          175 GMVTSFTGSNFPFLEQVGLSCTILKLDANAMLS---PTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP  251 (325)
Q Consensus       175 G~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~---Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP  251 (325)
                      |.....-..   ......+.+..+++.||+...   +|||+. .|+.||++|++.+.+=+.++...  ..|++||.+++|
T Consensus       102 ~~~~~~l~~---~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~~~~~~~--~~l~~GD~~~~~  175 (198)
T 2bnm_A          102 YYVYNCLVR---TKRAPSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGDKENPKE--ALLPTGASMFVE  175 (198)
T ss_dssp             TEEEEECCC---CTTSTTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESCTTSCEE--EEECTTCEEEEC
T ss_pred             ceEEEeecc---CCCCCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECCcCCccc--EEECCCCEEEeC
Confidence            433333322   233446889999999999887   688875 89999999999998732111123  469999999999


Q ss_pred             CccEEEEEc--CCCCEEEEEEe
Q 020545          252 RCFVVAIIA--GPEGIECFSIT  271 (325)
Q Consensus       252 ~G~~h~~~~--g~~~~~~~~~~  271 (325)
                      ++.+|...|  ++++++++.+.
T Consensus       176 ~~~~H~~~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          176 EHVPHAFTAAKGTGSAKLIAVN  197 (198)
T ss_dssp             TTCCEEEEESTTSCCEEEEEEE
T ss_pred             CCCceEEEecCCCCCeEEEEEe
Confidence            999998654  56778877654

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.72  E-value=1.5e-07  Score=78.63  Aligned_cols=96  Identities=15%  Similarity=0.093  Sum_probs=72.7

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      .++.+.++.+.||+...+|||+. .|+.||++|++++.+=   ++..  ..|++||++++|+|.+|+..+ +++.+.++.
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~~---~~~~--~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~  119 (147)
T 2f4p_A           46 FNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQER---GKPA--RILKKGDVVEIPPNVVHWHGAAPDEELVHIG  119 (147)
T ss_dssp             SSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEET---TSCC--EEEETTCEEEECTTCCEEEEEBTTBCEEEEE
T ss_pred             CcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEEC---CEEE--EEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            36889999999999999999986 8999999999998752   2221  259999999999999998666 677888887


Q ss_pred             EeCCCCCceeeecCccccccCCCHHHHHH
Q 020545          270 ITTSTRPALGKLGGKQSVMNGFSASVVQL  298 (325)
Q Consensus       270 ~~~s~~p~~~~laG~~svl~~~~~evla~  298 (325)
                      +.......      ...|+..+.++...+
T Consensus       120 v~~~~~~~------~~~wl~~v~~e~~~~  142 (147)
T 2f4p_A          120 ISTQVHLG------PAEWLGSVTEEEYRK  142 (147)
T ss_dssp             EECCGGGC------CCEECCCCCHHHHHH
T ss_pred             EEccCCCC------CceecccCCHHHhhh
Confidence            76543211      135666666555543

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.71  E-value=1e-07  Score=76.89  Aligned_cols=74  Identities=16%  Similarity=0.241  Sum_probs=62.0

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      ..+++...++.||....+||| +..|+.||++|++++.+   ++ +.+  .+++||+++||+|.+|...+ ++++++++.
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H-~~~Ei~~v~~G~~~~~i---~~-~~~--~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~  104 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSH-NEYELFIVIQGNAIIRI---ND-EDF--PVTKGDLIIIPLDSEHHVINNNQEDFHFYT  104 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCC-SSEEEEEEEESEEEEEE---TT-EEE--EEETTCEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             CCcEEEEEEECCCCccCCEec-CCeEEEEEEeCEEEEEE---CC-EEE--EECCCcEEEECCCCcEEeEeCCCCCEEEEE
Confidence            357899999999999999999 68999999999999887   33 333  69999999999999998766 667777665


Q ss_pred             Ee
Q 020545          270 IT  271 (325)
Q Consensus       270 ~~  271 (325)
                      +.
T Consensus       105 i~  106 (128)
T 4i4a_A          105 IW  106 (128)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.70  E-value=9.9e-08  Score=78.31  Aligned_cols=81  Identities=17%  Similarity=0.267  Sum_probs=64.7

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      -++.+..+.+.||+...+|||+ ..|+.||++|++.+.+... + +.  ..+++||+++||+|.+|...| +++.+.++.
T Consensus        37 ~~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~~-~-~~--~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~  111 (145)
T 3ht1_A           37 DRFVLTEFEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPDQ-G-RT--EEVGPGEAIFIPRGEPHGFVTGPGQTCRFLV  111 (145)
T ss_dssp             CSEEEEEEEEEEEEECCCEECS-SCEEEEEEEECEEEEEGGG-T-EE--EEECTTCEEEECTTCCBEEECCTTCCEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCccCC-CceEEEEEEeEEEEEEeEC-C-EE--EEECCCCEEEECCCCeEEeEcCCCCCEEEEE
Confidence            3678999999999999999997 5577899999999874222 2 23  369999999999999998766 677788887


Q ss_pred             EeCCCCC
Q 020545          270 ITTSTRP  276 (325)
Q Consensus       270 ~~~s~~p  276 (325)
                      +.....+
T Consensus       112 i~~~~~~  118 (145)
T 3ht1_A          112 VAPCERP  118 (145)
T ss_dssp             EEESCCC
T ss_pred             EECCCCC
Confidence            7765544

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.70  E-value=1.3e-07  Score=82.51  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=54.7

Q ss_pred             eccccC---CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           11 VCLTEN---DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        11 ~~p~h~---~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ..+|++   +..|++||++|+ +.+.+-+..+     +.....|++||+++||+|.+|++.|.+++++++++++.
T Consensus        86 ~~~H~H~~~~~~E~~~Vl~G~-~~~~i~~~~g-----~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~  154 (190)
T 1x82_A           86 TKGHFHAKLDRAEVYVALKGK-GGMLLQTPEG-----DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYP  154 (190)
T ss_dssp             CCCBBCSSTTCCEEEEEEESC-EEEEEECTTC-----CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEE
T ss_pred             CCCeECCCCCCCEEEEEEcCE-EEEEEcCcCC-----cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEEC
Confidence            345644   347999999999 9999865433     44568999999999999999999999999999999874

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=98.68  E-value=5.4e-06  Score=74.81  Aligned_cols=162  Identities=9%  Similarity=0.004  Sum_probs=95.5

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcceeee
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFL   96 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~f~   96 (325)
                      ..+|++||++|+ ..+..   ++      + ...+++||+++||+|+.+-|...+... .++|..+.  ..+|..     
T Consensus        64 p~dE~~~VleG~-~~lt~---~g------~-~~~~~~Gd~~~ip~G~~~~w~~~~~~~-~~y~~~~~--~~~p~~-----  124 (238)
T 3myx_A           64 PYTEMLVMHRGS-VTLTS---GT------D-SVTLSTGESAVIGRGTQVRIDAQPESL-WAFCASTQ--ASGPDK-----  124 (238)
T ss_dssp             SSEEEEEEEESE-EEEEE---TT------E-EEEEETTCEEEECTTCCEEEEECTTEE-EEEEEECS--CCSCCC-----
T ss_pred             CCcEEEEEEEeE-EEEEC---CC------e-EEEEcCCCEEEECCCCEEEEEecCCeE-EEEEeccC--CCCCCC-----
Confidence            358999999999 88876   32      3 477999999999999999998876543 34444421  112210     


Q ss_pred             eccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcc-cCCCCCCCceeeeecCCCCCeeccCCe
Q 020545           97 LTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPL-PHQHGNANLMVNNFANFPADFCVKKAG  175 (325)
Q Consensus        97 laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~-~~p~~~~~~~~~nl~~~~p~~~~~~gG  175 (325)
                                                          ..|+++..+.  .+.- ..|      -+-.+....|...    .
T Consensus       125 ------------------------------------~~~~~i~~~~--~l~P~~~p------~p~~~l~G~P~~~----~  156 (238)
T 3myx_A          125 ------------------------------------SGITALDRLA--LLTPSSPP------DPSIMISPLPQCR----S  156 (238)
T ss_dssp             ------------------------------------CSEEEECTTC--CCEEECCC------CGGGBSSCCCCEE----E
T ss_pred             ------------------------------------CccEEecCCC--CCCCCCCC------ChhheecCCchhe----e
Confidence                                                0133332210  1100 000      0011222233321    1


Q ss_pred             EEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE
Q 020545          176 MVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV  255 (325)
Q Consensus       176 ~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~  255 (325)
                      +  .+...     .+-.+++..-...||..+ + |+-+.+|++||++|+++++.  .+|+. .  ++++||+++||+|+.
T Consensus       157 ~--~~~~~-----~~g~~~~GiW~~tpG~~~-~-~~~~~~E~~~ILeG~v~lt~--~~G~~-~--~~~aGD~~~~P~G~~  222 (238)
T 3myx_A          157 N--NLFED-----TASTLRIGVWDSTPYERI-S-RPHKIHELMNLIEGRVVLSL--ENGSS-L--TVNTGDTVFVAQGAP  222 (238)
T ss_dssp             E--EEEEC-----SSSSCEEEEEEECCEEBC-C-EECSSCEEEEEEECCEEEEE--TTSCE-E--EECTTCEEEECTTCE
T ss_pred             e--EEEEC-----CCCCEEEeEEEeCCCEEE-C-CcCCCCEEEEEEEeEEEEEe--CCCCE-E--EECCCCEEEECCCCE
Confidence            1  11111     122467777888888732 2 33368899999999998874  45543 2  699999999999998


Q ss_pred             -EEEE
Q 020545          256 -VAII  259 (325)
Q Consensus       256 -h~~~  259 (325)
                       .|..
T Consensus       223 ~tWev  227 (238)
T 3myx_A          223 CKWTS  227 (238)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4544

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=98.68  E-value=6.3e-08  Score=77.85  Aligned_cols=66  Identities=18%  Similarity=0.061  Sum_probs=52.8

Q ss_pred             cceeeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            7 VHIIVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         7 ~~~~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +..-+-+|++. ..|++||++|+ +.+.+  .+      .+ ...|++||++++|+|.+|++.|.+++++++++++.
T Consensus        48 pg~~~~~H~H~~~~e~~~Vl~G~-~~~~~--~~------~~-~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~  114 (125)
T 3h8u_A           48 PGQEIASHVHPHGQDTWTVISGE-AEYHQ--GN------GI-VTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVA  114 (125)
T ss_dssp             TTCEECCC-CTTCEEEEEEEECE-EEEEC--ST------TC-EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEE
T ss_pred             CCCcCCcccCCCCeEEEEEEEeE-EEEEE--CC------Ce-EEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEEC
Confidence            34455677555 58999999999 87754  12      12 57899999999999999999999999999999874

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.68  E-value=1e-07  Score=77.64  Aligned_cols=77  Identities=17%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCC
Q 020545          195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTS  273 (325)
Q Consensus       195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s  273 (325)
                      +.++.+.||+...+|||+...|+.||++|++++.+-+  + +.  ..|++||+++||+|.+|...+ ++ .+.++.++..
T Consensus        45 ~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~--~-~~--~~l~~Gd~~~ip~g~~H~~~~~~~-~~~~l~~~~p  118 (134)
T 2o8q_A           45 VIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYED--I-GA--VMLEAGGSAFQPPGVRHRELRHSD-DLEVLEIVSP  118 (134)
T ss_dssp             EEEECC-----CCCEEECCSCEEEEEEESEEEEEETT--T-EE--EEEETTCEEECCTTCCEEEEEECT-TCEEEEEESS
T ss_pred             EEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEECC--c-EE--EEecCCCEEEECCCCcEEeEeCCC-CeEEEEEECC
Confidence            4455555899999999998899999999999987622  1 33  369999999999999998777 55 4677766655


Q ss_pred             CCCc
Q 020545          274 TRPA  277 (325)
Q Consensus       274 ~~p~  277 (325)
                      ....
T Consensus       119 ~~~~  122 (134)
T 2o8q_A          119 AGFA  122 (134)
T ss_dssp             TTCC
T ss_pred             Cchh
Confidence            5443

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.68  E-value=1.2e-07  Score=77.60  Aligned_cols=73  Identities=15%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      .+.+.++++.||+...+|||++..|+.||++|++.+.+   ++ +.+  .|++||++++|+|.+|...| ++++++++.+
T Consensus        56 ~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~-~~~--~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v  129 (133)
T 1o4t_A           56 ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NG-KDV--PIKAGDVCFTDSGESHSIENTGNTDLEFLAV  129 (133)
T ss_dssp             EEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TT-EEE--EEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             eEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CC-EEE--EeCCCcEEEECCCCcEEeEECCCCCEEEEEE
Confidence            45778999999999999999878999999999999876   23 333  69999999999999998766 6777776654

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=98.67  E-value=1e-07  Score=73.23  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             eeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      -+-+|+++ ..|+.||++|+ +.+.+   ++      + ...+++||++++|+|..|++.|.++++++++++..
T Consensus        40 ~~~~H~H~~~~e~~~v~~G~-~~~~~---~~------~-~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~  102 (105)
T 1v70_A           40 AQKVHVHEGSDKVYYALEGE-VVVRV---GE------E-EALLAPGMAAFAPAGAPHGVRNESASPALLLVVTA  102 (105)
T ss_dssp             EEEEECCSSCEEEEEEEESC-EEEEE---TT------E-EEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEE
T ss_pred             cCCccCCCCCcEEEEEEeCE-EEEEE---CC------E-EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeC
Confidence            34456444 57899999999 99877   42      3 58899999999999999999999999999988864

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.67  E-value=8.9e-08  Score=77.13  Aligned_cols=82  Identities=21%  Similarity=0.212  Sum_probs=63.0

Q ss_pred             ccccccceEEEEEecCCCccC-CeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCC
Q 020545          187 FLEQVGLSCTILKLDANAMLS-PTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEG  264 (325)
Q Consensus       187 ~L~~~gis~~~v~l~pg~~~~-Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~  264 (325)
                      .+..-++.+..+.+.||+... +|||+...++.||++|++.+.+   ++ +.  ..|++||+++||+|.+|...+ ++++
T Consensus        20 ~~~~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~-~~--~~l~~Gd~i~i~~~~~H~~~~~~~~~   93 (125)
T 3cew_A           20 SLALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DG-EK--IELQAGDWLRIAPDGKRQISAASDSP   93 (125)
T ss_dssp             HHTCSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TT-EE--EEEETTEEEEECTTCCEEEEEBTTBC
T ss_pred             ccCCCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CC-EE--EEeCCCCEEEECCCCcEEEEcCCCCC
Confidence            344557788999999999887 8999765556669999999876   23 33  369999999999999998666 6677


Q ss_pred             EEEEEEeCCC
Q 020545          265 IECFSITTST  274 (325)
Q Consensus       265 ~~~~~~~~s~  274 (325)
                      +.++.+....
T Consensus        94 ~~~~~i~~~~  103 (125)
T 3cew_A           94 IGFLCIQVKA  103 (125)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEcCC
Confidence            8777665433

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.67  E-value=1.2e-07  Score=74.91  Aligned_cols=75  Identities=19%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      ++.+..+++.||+...+|||+ ..|+.||++|++.+.+   ++ +.  ..|++||++++|+|.+|...+.. +++++.++
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~---~~-~~--~~l~~Gd~~~ip~~~~H~~~~~~-~~~~l~v~  104 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFHVNV---DG-VI--KVLTAGDSFFVPPHVDHGAVCPT-GGILIDTF  104 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCS-SEEEEEEEEECEEEEE---TT-EE--EEECTTCEEEECTTCCEEEEESS-CEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECC-cceEEEEEeeEEEEEE---CC-EE--EEeCCCCEEEECcCCceeeEeCC-CcEEEEEE
Confidence            468899999999999999997 7899999999999887   33 33  36999999999999999876644 56666666


Q ss_pred             CCC
Q 020545          272 TST  274 (325)
Q Consensus       272 ~s~  274 (325)
                      ...
T Consensus       105 ~p~  107 (116)
T 2pfw_A          105 SPA  107 (116)
T ss_dssp             ESC
T ss_pred             CCc
Confidence            443

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.67  E-value=1.9e-07  Score=89.27  Aligned_cols=75  Identities=12%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      .+.+....|.||+...+|||+ ..|+.||++|++.++.++.   +.+  .+++||+++||.|.+|...| +++++.++.+
T Consensus        99 ~l~~~~~~l~PG~~~~~H~H~-~~e~~yVl~G~g~~t~v~g---~~~--~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v  172 (354)
T 2d40_A           99 TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVDG---ERT--PMNEGDFILTPQWRWHDHGNPGDEPVIWLDG  172 (354)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEETT---EEE--ECCTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             cEEEEEEEECCCCCcCCeecC-cceEEEEEEEEEEEEEECC---EEE--EEcCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            578999999999999999996 6699999999999877753   333  69999999999999998766 7788999888


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       173 ~d  174 (354)
T 2d40_A          173 LD  174 (354)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.65  E-value=9.9e-08  Score=81.57  Aligned_cols=66  Identities=9%  Similarity=0.066  Sum_probs=56.2

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC-CCCEEEEEEeec
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG-SSDVVIVFVGET   83 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g-~~~l~~~~~~~~   83 (325)
                      +....-+|++...|++||++|+ +.+.+   ++      + .+.|++||+++||+|.+|++.|.+ +++++++++...
T Consensus        65 pG~~~~~H~H~~~E~~~Vl~G~-~~~~i---~~------~-~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~  131 (167)
T 3ibm_A           65 PGGYTTLERHEHTHVVMVVRGH-AEVVL---DD------R-VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDS  131 (167)
T ss_dssp             TTCBCCCBBCSSCEEEEEEESE-EEEEE---TT------E-EEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEES
T ss_pred             CCCCCCCccCCCcEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeC
Confidence            3444567766789999999999 99887   53      3 589999999999999999999999 899999999853

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.64  E-value=1.9e-07  Score=72.90  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=49.7

Q ss_pred             cCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           15 END-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        15 h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +++ ..|+.||++|+ +.+.+   ++      + ...|++||++++|+|.+|++.|.++++++++++..
T Consensus        40 ~H~~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~   97 (113)
T 2gu9_A           40 RHRGADQWLFVVDGA-GEAIV---DG------H-TQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYH   97 (113)
T ss_dssp             SSCCCEEEEEEEECC-EEEEE---TT------E-EEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             ccCCCcEEEEEEeCE-EEEEE---CC------E-EEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEEC
Confidence            445 89999999999 99887   42      3 58899999999999999999999999999888874

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.64  E-value=1.7e-07  Score=74.74  Aligned_cols=66  Identities=14%  Similarity=0.129  Sum_probs=56.0

Q ss_pred             ccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545          189 EQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG  261 (325)
Q Consensus       189 ~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g  261 (325)
                      +.-++.+.++.+.||+-..+|||+. .|+.||++|++++.+   +++ .  ..|++||.++||+|.+|...|.
T Consensus        32 ~~~~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i---~~~-~--~~l~~Gd~i~ip~~~~H~~~~~   97 (114)
T 3fjs_A           32 KEHRLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGV---DGA-Q--RRLHQGDLLYLGAGAAHDVNAI   97 (114)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEE---TTE-E--EEECTTEEEEECTTCCEEEEES
T ss_pred             eCCCEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEE---CCE-E--EEECCCCEEEECCCCcEEEEeC
Confidence            3446789999999999999999985 699999999999886   232 3  4699999999999999997764

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=98.62  E-value=1.1e-07  Score=80.33  Aligned_cols=62  Identities=16%  Similarity=0.263  Sum_probs=53.1

Q ss_pred             eccccC-CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCC-CeEEEEecCCCCEEEEEEeec
Q 020545           11 VCLTEN-DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLG-SASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus        11 ~~p~h~-~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G-~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      .-+|++ +..|++||++|+ +.+.+   ++      + .+.|++||+++||+| ..|++.|.++++++++++...
T Consensus        60 ~~~H~H~~~~E~~~Vl~G~-~~~~~---~~------~-~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p  123 (162)
T 3l2h_A           60 TEYHLHHYEEEAVYVLSGK-GTLTM---EN------D-QYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQR  123 (162)
T ss_dssp             SSSBEESSCCEEEEEEESC-EEEEE---TT------E-EEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEEC
T ss_pred             CCCccCCCCCEEEEEEEEE-EEEEE---CC------E-EEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECC
Confidence            456644 789999999999 99887   42      3 588999999999997 999999999999999988753

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.61  E-value=1.2e-07  Score=76.71  Aligned_cols=74  Identities=11%  Similarity=0.147  Sum_probs=61.9

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      .++.+..+++.||+...+|||+ ..|+.||++|++++.+   +++ .+  .+++||++++|+|.+|...+ +++++.++.
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~~-~~--~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~  118 (126)
T 1vj2_A           46 PNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQG-EE--TVEEGFYIFVEPNEIHGFRNDTDSEVEFLC  118 (126)
T ss_dssp             SSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SSC-EE--EEETTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             CCEEEEEEEECCCCcCCceeCC-CcEEEEEEEeEEEEEE---CCE-EE--EECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            3678999999999999999997 7899999999998875   232 33  69999999999999998766 667787776


Q ss_pred             Ee
Q 020545          270 IT  271 (325)
Q Consensus       270 ~~  271 (325)
                      +.
T Consensus       119 v~  120 (126)
T 1vj2_A          119 LI  120 (126)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.59  E-value=1.7e-07  Score=80.14  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=55.6

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +....-+|++...|++||++|+ +.+.+   ++      + ...|++||+++||+|..|.+.|.++++++++|+..
T Consensus        62 pG~~~~~H~H~~~E~~~Vl~G~-~~~~v---~g------~-~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i~~  126 (166)
T 3jzv_A           62 PGGHSTLERHQHAHGVMILKGR-GHAMV---GR------A-VSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVN  126 (166)
T ss_dssp             EEEECCCBBCSSCEEEEEEEEC-EEEEE---TT------E-EEEECTTCEEEECTTCCEEEECCTTSCEEEEEEEE
T ss_pred             CCCccCceeCCCcEEEEEEeCE-EEEEE---CC------E-EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEc
Confidence            3444567766778999999999 99877   53      3 58999999999999999999999999999999985

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.58  E-value=1.8e-07  Score=79.17  Aligned_cols=64  Identities=13%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ....-+|++...|++||++|+ +.+.+   ++      + ...|++||+++||+|..|.+.|.++++++++|+..
T Consensus        54 G~~~~~H~H~~~E~~~Vl~G~-~~v~v---~g------~-~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~  117 (156)
T 3kgz_A           54 GGYSTLERHAHVHAVMIHRGH-GQCLV---GE------T-ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVN  117 (156)
T ss_dssp             EEECCCBBCSSCEEEEEEEEE-EEEEE---TT------E-EEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             CCccCceeCCCcEEEEEEeCE-EEEEE---CC------E-EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEe
Confidence            344556767788999999999 99887   53      3 58899999999999999999999999999999985

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=98.57  E-value=3e-07  Score=76.55  Aligned_cols=68  Identities=15%  Similarity=0.080  Sum_probs=52.4

Q ss_pred             eeccccC-CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTEN-DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~-~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      -+-+|++ ...|++||++|+ +.+.+-+...    .......|++||+++||+|.+|++.|.+++++++++++.
T Consensus        55 ~~~~H~H~~~~E~~~Vl~G~-~~~~i~~~~~----~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i~~  123 (148)
T 2oa2_A           55 DIGLEIHPHLDQFLRVEEGR-GLVQMGHRQD----NLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSIYA  123 (148)
T ss_dssp             BCCCBCCTTCEEEEEEEESE-EEEEEESBTT----BCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEEEE
T ss_pred             ccCceECCCCcEEEEEEeCE-EEEEECCccc----cceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEEEC
Confidence            3445644 466999999999 9998832210    011237899999999999999999999999999888864

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.56  E-value=4.5e-07  Score=71.48  Aligned_cols=72  Identities=18%  Similarity=0.266  Sum_probs=58.0

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      -++.+.++.+.||+-..+|||+ ..|+.||++|++.+.+   ++ +.  ..+++||++++|+|.+|...+.+ ++.++.+
T Consensus        38 ~~~~~~~~~~~~g~~~~~H~H~-~~e~~~vl~G~~~~~~---~~-~~--~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~v  109 (115)
T 1yhf_A           38 QDLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQ-ET--YRVAEGQTIVMPAGIPHALYAVE-AFQMLLV  109 (115)
T ss_dssp             TTEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TT-EE--EEEETTCEEEECTTSCEEEEESS-CEEEEEE
T ss_pred             CceEEEEEEECCCCccCCEECC-CcEEEEEEeCEEEEEE---CC-EE--EEECCCCEEEECCCCCEEEEECC-CceEEEE
Confidence            3568889999999999999997 6899999999999875   33 33  36999999999999999876643 4554443

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.56  E-value=1.7e-07  Score=76.86  Aligned_cols=68  Identities=7%  Similarity=-0.030  Sum_probs=55.4

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      +..-+-+|++...|+.||++|+ +.+.+.. ++      + ...+++||++++|+|.+|++.|.++++++++++...
T Consensus        48 pg~~~~~H~H~~~e~~~vl~G~-~~~~~~~-~~------~-~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~  115 (145)
T 3ht1_A           48 PNGSTPPHFHEWEHEIYVLEGS-MGLVLPD-QG------R-TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPC  115 (145)
T ss_dssp             EEEECCCEECSSCEEEEEEEEC-EEEEEGG-GT------E-EEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEES
T ss_pred             CCCcCCCccCCCceEEEEEEeE-EEEEEeE-CC------E-EEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECC
Confidence            3445567877888999999999 8887311 32      3 588999999999999999999999999999988753

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.54  E-value=3.3e-07  Score=85.91  Aligned_cols=78  Identities=10%  Similarity=0.034  Sum_probs=64.5

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+.+..+.+.||+...+|||+++.|+.||++|++++.+   +| +.  ..|++||++++|+|.+|...|.++.++++.++
T Consensus        45 ~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~---~~-~~--~~l~~Gd~~~~p~~~~H~~~n~~~~~~~~~~~  118 (337)
T 1y3t_A           45 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DG-ER--YLLISGDYANIPAGTPHSYRMQSHRTRLVSYT  118 (337)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TT-EE--EEECTTCEEEECTTCCEEEEECSTTEEEEEEE
T ss_pred             eEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE---CC-EE--EEECCCCEEEECCCCcEEEEECCCCeEEEEEE
Confidence            67899999999999999999889999999999999985   23 33  36999999999999999876633368777776


Q ss_pred             CCCC
Q 020545          272 TSTR  275 (325)
Q Consensus       272 ~s~~  275 (325)
                      +...
T Consensus       119 ~p~~  122 (337)
T 1y3t_A          119 MKGN  122 (337)
T ss_dssp             ETTS
T ss_pred             CCCC
Confidence            5543

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.54  E-value=3.2e-07  Score=73.83  Aligned_cols=63  Identities=24%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .....+|+++..|+.||++|+ +.+.+   ++      + ...+++||+++||+|.+|.+.|.++++++++++.
T Consensus        44 g~~~~~H~H~~~Ei~~v~~G~-~~~~i---~~------~-~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i~  106 (128)
T 4i4a_A           44 ETKSFRHSHNEYELFIVIQGN-AIIRI---ND------E-DFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIW  106 (128)
T ss_dssp             TEECCCBCCSSEEEEEEEESE-EEEEE---TT------E-EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CCccCCEecCCeEEEEEEeCE-EEEEE---CC------E-EEEECCCcEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            345567877889999999999 99888   53      3 5899999999999999999999999988887765

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.54  E-value=1.6e-07  Score=72.56  Aligned_cols=62  Identities=13%  Similarity=0.118  Sum_probs=49.4

Q ss_pred             eccccCCC-CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           11 VCLTENDL-HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        11 ~~p~h~~a-~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .-+|++.. .|+.||++|+ +.+.+   ++     ......|++||.+++|+|.+|++.|.++++++++.+-
T Consensus        31 ~~~H~H~~~~e~~~Vl~G~-~~~~~---~~-----g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v~   93 (97)
T 2fqp_A           31 TGWHRHSMDYVVVPMTTGP-LLLET---PE-----GSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIE   93 (97)
T ss_dssp             CCSEECCSCEEEEESSCEE-EEEEE---TT-----EEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             CCCEECCCCcEEEEEeecE-EEEEe---CC-----CCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEEE
Confidence            33464444 4699999999 88877   42     2136899999999999999999999999999888764

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.53  E-value=2e-07  Score=74.01  Aligned_cols=61  Identities=21%  Similarity=0.188  Sum_probs=51.8

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEE-EeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVL-GLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~-~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .+-+|+++..|+.||++|+ +.+.+   ++     +.  . .|++||++++|+|.+|++.|.++++++++++.
T Consensus        39 ~~~~H~H~~~e~~~Vl~G~-~~~~i---~~-----~~--~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~  100 (117)
T 2b8m_A           39 QMPKHYSNSYVHLIIIKGE-MTLTL---ED-----QE--PHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVK  100 (117)
T ss_dssp             BCCCEECSSCEEEEEEESE-EEEEE---TT-----SC--CEEEETTCEEEECTTCEEEEECCSSSEEEEEEEE
T ss_pred             cCCCEeCCCcEEEEEEeCE-EEEEE---CC-----EE--EEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEE
Confidence            3456777889999999999 99887   43     22  4 89999999999999999999999999888874

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.52  E-value=3.8e-07  Score=79.20  Aligned_cols=62  Identities=10%  Similarity=-0.040  Sum_probs=50.8

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec-CCCCEEEEEEe
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN-GSSDVVIVFVG   81 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~-g~~~l~~~~~~   81 (325)
                      +||++..|++||++|+ +.+.+=+.+      ....+.|++||.++||+|.+|++.|. +++++++++++
T Consensus       135 ~h~h~~~E~~~Vl~G~-~~~~~~~~~------~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          135 NSGHAGNEFLFVLEGE-IHMKWGDKE------NPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVN  197 (198)
T ss_dssp             CCCCSSCEEEEEEESC-EEEEESCTT------SCEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEEEE
T ss_pred             cccCCCeEEEEEEeee-EEEEECCcC------CcccEEECCCCEEEeCCCCceEEEecCCCCCeEEEEEe
Confidence            4666679999999999 998872111      11368999999999999999999999 99999988875

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.51  E-value=2.3e-07  Score=73.95  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=49.2

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCC-CEEEEEEee
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGE   82 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~-~l~~~~~~~   82 (325)
                      +|.+..|+.||++|+ +.+.+   ++     +.....|++||.++||+|..|.+.|.+++ +..+++++.
T Consensus        49 ~~~~~~E~~~Vl~G~-~~l~~---~~-----~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~~  109 (112)
T 2opk_A           49 YDSPQDEWVMVVSGS-AGIEC---EG-----DTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVHC  109 (112)
T ss_dssp             BCCSSEEEEEEEESC-EEEEE---TT-----CSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             ccCCccEEEEEEeCe-EEEEE---CC-----EEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEE
Confidence            566788999999999 99988   43     21016899999999999999999999876 677787763

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.51  E-value=4.2e-07  Score=75.81  Aligned_cols=86  Identities=17%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCC
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAY   87 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~   87 (325)
                      ..-+-+|.++..|++||++|+ +.+.+   ++     +. ...+++||++++|+|.+|++.|.++++++++++.....  
T Consensus        58 g~~~~~H~H~~~E~~~Vl~G~-~~~~~---~~-----~~-~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~~~--  125 (147)
T 2f4p_A           58 GARTHWHSHPGGQILIVTRGK-GFYQE---RG-----KP-ARILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQVH--  125 (147)
T ss_dssp             TCEECSEECTTCEEEEEEEEE-EEEEE---TT-----SC-CEEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECCGG--
T ss_pred             CCccCceECCCceEEEEEeCE-EEEEE---CC-----EE-EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEccCC--
Confidence            344456766679999999999 98887   43     22 26899999999999999999999999999998874211  


Q ss_pred             CCCcceeeeeccccccccCCChhHHhhh
Q 020545           88 VPGEFSYFLLTGAQGILGGFSSEFTGRA  115 (325)
Q Consensus        88 ~p~~~~~f~laG~~s~l~~f~~~vLa~a  115 (325)
                        +.        ...|+..++.+.+.++
T Consensus       126 --~~--------~~~wl~~v~~e~~~~~  143 (147)
T 2f4p_A          126 --LG--------PAEWLGSVTEEEYRKA  143 (147)
T ss_dssp             --GC--------CCEECCCCCHHHHHHH
T ss_pred             --CC--------CceecccCCHHHhhhc
Confidence              10        1256666666665543

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.50  E-value=5.9e-07  Score=69.96  Aligned_cols=76  Identities=14%  Similarity=0.131  Sum_probs=58.7

Q ss_pred             cccceEEEEEecCCCccCCeecCCCCEE-EEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEE
Q 020545          190 QVGLSCTILKLDANAMLSPTYTADSVQV-FYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF  268 (325)
Q Consensus       190 ~~gis~~~v~l~pg~~~~Ph~h~~A~ei-~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~  268 (325)
                      +-++.+.++.+.||.-..+|||+...|+ .||++|++++.+  .+++ .  ..|++||++++|+|.+|...+..+ ..++
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~--~~~~-~--~~l~~Gd~~~ip~~~~H~~~~~~~-~~~l  103 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG--DGDA-V--IPAPRGAVLVAPISTPHGVRAVTD-MKVL  103 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC--GGGC-E--EEECTTEEEEEETTSCEEEEESSS-EEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe--CCCE-E--EEECCCCEEEeCCCCcEEEEEcCC-cEEE
Confidence            3357888999999999999999876788 899999999875  2122 2  369999999999999998766433 4444


Q ss_pred             EEe
Q 020545          269 SIT  271 (325)
Q Consensus       269 ~~~  271 (325)
                      .++
T Consensus       104 ~~~  106 (110)
T 2q30_A          104 VTI  106 (110)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.49  E-value=4.3e-07  Score=72.42  Aligned_cols=64  Identities=14%  Similarity=0.031  Sum_probs=51.6

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      +..-+-+|++...|+.||++|+ +.+.+   ++      + .+.|++||.++||+|.+|++.|.++..+.++.++
T Consensus        45 ~G~~~~~H~H~~~e~~~Vl~G~-~~~~i---~~------~-~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~v~  108 (114)
T 3fjs_A           45 AGKQVGSHSVAGPSTIQCLEGE-VEIGV---DG------A-QRRLHQGDLLYLGAGAAHDVNAITNTSLLVTVVL  108 (114)
T ss_dssp             TTCEEEEECCSSCEEEEEEESC-EEEEE---TT------E-EEEECTTEEEEECTTCCEEEEESSSEEEEEEEEC
T ss_pred             CCCccCceeCCCcEEEEEEECE-EEEEE---CC------E-EEEECCCCEEEECCCCcEEEEeCCCcEEEEEEEe
Confidence            3444556766778999999999 99887   53      3 5899999999999999999999977666665554

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.49  E-value=4e-07  Score=74.08  Aligned_cols=60  Identities=10%  Similarity=-0.017  Sum_probs=48.5

Q ss_pred             eccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           11 VCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        11 ~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .-+|+++ ..|++||++|+ +.+.+   ++     .+ ...|++||+++||+|.+|++.|.++ ++++++++
T Consensus        56 ~~~H~H~~~~E~~~vl~G~-~~~~~---~~-----~~-~~~l~~Gd~~~ip~g~~H~~~~~~~-~~~~l~~~  116 (134)
T 2o8q_A           56 PTWHTHTVGFQLFYVLRGW-VEFEY---ED-----IG-AVMLEAGGSAFQPPGVRHRELRHSD-DLEVLEIV  116 (134)
T ss_dssp             CCCEEECCSCEEEEEEESE-EEEEE---TT-----TE-EEEEETTCEEECCTTCCEEEEEECT-TCEEEEEE
T ss_pred             CCCEECCCCcEEEEEEeCE-EEEEE---CC-----cE-EEEecCCCEEEECCCCcEEeEeCCC-CeEEEEEE
Confidence            3456445 49999999999 88887   42     13 6899999999999999999999877 46777776

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.49  E-value=3.2e-07  Score=75.09  Aligned_cols=62  Identities=26%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             eeeccccCC-CCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            9 IIVCLTEND-LHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         9 ~~~~p~h~~-a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .-+-+|.+. ..|++||++|+ +.+.+   ++      + ...|++||++++|+|.+|++.|.++++++++++.
T Consensus        68 ~~~~~H~H~~~~E~~~Vl~G~-~~~~i---~~------~-~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v~  130 (133)
T 1o4t_A           68 SSVGLHKHEGEFEIYYILLGE-GVFHD---NG------K-DVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVI  130 (133)
T ss_dssp             CEEEEEECCSEEEEEEEEESE-EEEEE---TT------E-EEEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             CccCceECCCccEEEEEEeCE-EEEEE---CC------E-EEEeCCCcEEEECCCCcEEeEECCCCCEEEEEEE
Confidence            334466544 68999999999 98887   42      3 5889999999999999999999999999888775

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.47  E-value=2e-07  Score=84.42  Aligned_cols=72  Identities=6%  Similarity=-0.272  Sum_probs=53.0

Q ss_pred             eeeccc-cCCCCeEEEEEeCCeEEEEEE-------cCC---CCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEE
Q 020545            9 IIVCLT-ENDLHVIPIIIPCELGVAGMV-------LPN---DQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVI   77 (325)
Q Consensus         9 ~~~~p~-h~~a~ei~yV~~G~~g~~~~v-------~~~---~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~   77 (325)
                      .-..|| |+...|++||++|+ +.+.+-       ...   ++..+.+.+...+++||+++||+|.+|++.|.+++++++
T Consensus        54 ~~~~~H~H~~~~E~~yVLeG~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~  132 (239)
T 2xlg_A           54 GGPMPHIHYFINEWFWTPEGG-IELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPI  132 (239)
T ss_dssp             CSCCSEEESSEEEEEEETTCC-CEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEE
T ss_pred             CcCCCeECCCccEEEEEEEeE-EEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEE
Confidence            334567 55689999999999 988651       111   000112334689999999999999999999999999888


Q ss_pred             -EEEe
Q 020545           78 -VFVG   81 (325)
Q Consensus        78 -~~~~   81 (325)
                       ++++
T Consensus       133 ~l~~~  137 (239)
T 2xlg_A          133 VFVWM  137 (239)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             6665

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.46  E-value=4.5e-07  Score=73.32  Aligned_cols=63  Identities=10%  Similarity=-0.037  Sum_probs=53.0

Q ss_pred             eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .-+-+|+++..|+.||++|+ +.+.+   ++      + ...+++||++++|+|.+|++.|.++++++++++..
T Consensus        59 ~~~~~H~H~~~e~~~Vl~G~-~~~~i---~~------~-~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~v~~  121 (126)
T 1vj2_A           59 GLIDRHSHPWEHEIFVLKGK-LTVLK---EQ------G-EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIP  121 (126)
T ss_dssp             EEEEEECCSSCEEEEEEESE-EEEEC---SS------C-EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             CcCCceeCCCcEEEEEEEeE-EEEEE---CC------E-EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEc
Confidence            34456766789999999999 88876   42      2 47899999999999999999999999998888764

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.45  E-value=3.9e-07  Score=73.63  Aligned_cols=58  Identities=10%  Similarity=0.166  Sum_probs=47.8

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +.|.+.+|++||++|+ +.+.+   ++      + ...|++||+++||+|..|++.|.+ ++++++++..
T Consensus        54 ~~H~~~~E~~~Vl~G~-~~~~~---~g------~-~~~l~~GD~v~ip~g~~H~~~~~~-~~~~~l~v~~  111 (119)
T 3lwc_A           54 TETMAVDDVMIVLEGR-LSVST---DG------E-TVTAGPGEIVYMPKGETVTIRSHE-EGALTAYVTY  111 (119)
T ss_dssp             EEECSSEEEEEEEEEE-EEEEE---TT------E-EEEECTTCEEEECTTCEEEEEEEE-EEEEEEEEEE
T ss_pred             CccCCCCEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCEEEEEcCC-CCeEEEEEEC
Confidence            3455889999999999 99988   43      3 578999999999999999998875 6677777663

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.45  E-value=5.6e-07  Score=72.22  Aligned_cols=64  Identities=11%  Similarity=0.031  Sum_probs=52.7

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +..-+-+|++...|++||++|+ +.+.+   ++      + ...+++||++++|+|..|.+.|.++ +++++.++.
T Consensus        50 pg~~~~~H~H~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~  113 (126)
T 4e2g_A           50 PNTEMPAHEHPHEQAGVMLEGT-LELTI---GE------E-TRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFS  113 (126)
T ss_dssp             TTCEEEEECCSSEEEEEEEEEC-EEEEE---TT------E-EEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEE
T ss_pred             CCCcCCCccCCCceEEEEEEeE-EEEEE---CC------E-EEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEEC
Confidence            3444556766679999999999 99887   42      3 4889999999999999999999987 788887774

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.45  E-value=5.1e-07  Score=76.70  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=51.8

Q ss_pred             ccccC-CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCC--CeEEEEecCCCCEEEEEEeec
Q 020545           12 CLTEN-DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLG--SASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus        12 ~p~h~-~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G--~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      .+|++ ...|++||++|+ +.+.+   ++      + .+.|++||+++||+|  ..|++.|.++++++++++...
T Consensus        58 ~~H~H~~~eE~~~Vl~G~-~~~~~---~~------~-~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p  121 (163)
T 3i7d_A           58 LRHYHMEQDEFVMVTEGA-LVLVD---DQ------G-EHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTR  121 (163)
T ss_dssp             SSEEESSCCEEEEEEESC-EEEEE---TT------E-EEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEEC
T ss_pred             CCccCCCCcEEEEEEECE-EEEEE---CC------E-EEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECC
Confidence            35644 447999999999 99887   53      3 589999999999999  999999999999999998853

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.44  E-value=2.3e-06  Score=72.32  Aligned_cols=100  Identities=12%  Similarity=0.234  Sum_probs=73.3

Q ss_pred             ceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEe--CcEEEEEEeCCC
Q 020545          157 LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVK--GSGKAQIVGLNA  234 (325)
Q Consensus       157 ~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~--G~~~~~vv~p~g  234 (325)
                      ....++.+.++...  .+|..+.+-...    ....+++..+.+.  +-..+|||....|+.||++  |++.+.+   +|
T Consensus        17 ~~iv~~~ei~~~~~--~~G~srR~l~~~----~~fp~sv~~v~~g--~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dg   85 (157)
T 4h7l_A           17 PQMISLSEIEAVAC--PCGWAQRAFGHD----AGTSVSVHYTQIT--KAARTHYHREHQEIYVVLDHAAHATIEL---NG   85 (157)
T ss_dssp             CEEEETTTSCCEEE--TTEEEEEESCGG----GCCSCEEEEEEEC--SCCCCBBCSSCEEEEEEEEECTTCEEEE---TT
T ss_pred             ceEEEhhhCCCccC--CCCeeeEEeEcC----CCCcEEEEEEeCC--CCccceECCCCcEEEEEEecCcEEEEEE---CC
Confidence            46788888777543  478887754332    1223455555554  4568999999999999999  9999987   34


Q ss_pred             ceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCC
Q 020545          235 KLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTS  273 (325)
Q Consensus       235 ~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s  273 (325)
                      + .  ..|++||+++||+|..|... +  .++++.+.+-
T Consensus        86 e-~--~~l~~GD~v~IPpg~~H~i~-g--~l~~L~I~~P  118 (157)
T 4h7l_A           86 Q-S--YPLTKLLAISIPPLVRHRIV-G--EATIINIVSP  118 (157)
T ss_dssp             E-E--EECCTTEEEEECTTCCEEEE-S--CEEEEEEEES
T ss_pred             E-E--EEeCCCCEEEECCCCeEeeE-C--CEEEEEEECC
Confidence            3 3  36999999999999999976 3  6888877653

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.43  E-value=2.1e-06  Score=75.03  Aligned_cols=79  Identities=11%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             eEEEEEecCCC----------ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCC
Q 020545          194 SCTILKLDANA----------MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPE  263 (325)
Q Consensus       194 s~~~v~l~pg~----------~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~  263 (325)
                      +...+.+.++.          ....|+|+. .|+.||++|+|.+.+-+.++ +.++..+++||+++||+|..|+..++++
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d-~~~~i~v~~GDlIiIPaG~~H~f~~~~~  152 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKED-KWIRISMEKGDMITLPAGIYHRFTLDEK  152 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTS-CEEEEEEETTEEEEECTTCCEEEEECTT
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCC-eEEEEEECCCCEEEECcCCcCCcccCCC
Confidence            55666777665          347899987 79999999999999987644 3455579999999999999999877554


Q ss_pred             -CEEEEEEeCCC
Q 020545          264 -GIECFSITTST  274 (325)
Q Consensus       264 -~~~~~~~~~s~  274 (325)
                       .+.++.+|...
T Consensus       153 ~~~~airlF~~~  164 (191)
T 1vr3_A          153 NYVKAMRLFVGE  164 (191)
T ss_dssp             CCEEEEEEESSS
T ss_pred             CCEEEEEEECCC
Confidence             48888888754

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.42  E-value=7.3e-07  Score=77.90  Aligned_cols=67  Identities=18%  Similarity=0.109  Sum_probs=54.3

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ++-.|.++..|+.||++|+ |.+.+-+.++     +.....+++||+++||+|+.||+.+..+..++.+.+|.
T Consensus        96 ~~~~H~H~~~Ei~yVleG~-G~f~i~d~~d-----~~~~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~  162 (191)
T 1vr3_A           96 FFEEHLHLDEEIRYILEGS-GYFDVRDKED-----KWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFV  162 (191)
T ss_dssp             HHSCEECSSCEEEEEEEEE-EEEEEECTTS-----CEEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEES
T ss_pred             CCcceECCcceEEEEEece-EEEEECCCCC-----eEEEEEECCCCEEEECcCCcCCcccCCCCCEEEEEEEC
Confidence            3455755669999999999 9999965432     34346899999999999999999987777888888884

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.41  E-value=7.3e-07  Score=77.15  Aligned_cols=58  Identities=7%  Similarity=-0.078  Sum_probs=49.8

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +|++...|++||++|+ +.+.+   ++      + .+.|++||.++||+|.+|++.|.+++++ +++++.
T Consensus       121 ~H~h~~~E~~~Vl~G~-~~~~~---~~------~-~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~  178 (192)
T 1y9q_A          121 PHALGVIEYIHVLEGI-MKVFF---DE------Q-WHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVA  178 (192)
T ss_dssp             CCSTTCEEEEEEEESC-EEEEE---TT------E-EEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEE
T ss_pred             CCCCCCEEEEEEEEeE-EEEEE---CC------E-EEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEe
Confidence            5666778999999999 98877   43      3 5789999999999999999999999988 777764

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.38  E-value=1.4e-06  Score=75.35  Aligned_cols=147  Identities=12%  Similarity=0.136  Sum_probs=89.8

Q ss_pred             cCCChhHHhhhcCCCHHHHHHHhcccCce---eEEEecCCcCCCCcccCCC--CCCCc-eeeeecCCCCCeeccCCeE-E
Q 020545          105 GGFSSEFTGRAYNMNENEAKILAKSQTGV---LIIKLGQDESEKIPLPHQH--GNANL-MVNNFANFPADFCVKKAGM-V  177 (325)
Q Consensus       105 ~~f~~~vLa~af~v~~~~~~~l~~~q~~~---~Iv~~~~~~~~~~~~~~p~--~~~~~-~~~nl~~~~p~~~~~~gG~-~  177 (325)
                      .+++.+-||+..|++..++.++-+.+...   .+.+...    .+.++...  ..... ..   .  .. .....+|. .
T Consensus        23 ~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~----~l~v~~~~l~~~~~~~~~---~--~~-~~~~~~g~~~   92 (192)
T 1y9q_A           23 RGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIAS----GLEASFSAFFANDPQLLS---S--ER-SFPDDLNMKI   92 (192)
T ss_dssp             TTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHH----HHTCCSGGGGTTSTHHHH---H--CC-BCTTCTTEEE
T ss_pred             cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHH----HHCcCHHHHcCCCCCCCc---c--ce-EEeCCCCEEE
Confidence            37899999999999999999998765321   1111111    01100000  00001 00   0  00 11122333 3


Q ss_pred             EEEcCCCCcccccccceEEEEEecCCCccCCeecC-CCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEE
Q 020545          178 TSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTA-DSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       178 ~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~-~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                      ..+.    |......+.+..+++.||+...++||. ...|+.||++|++.+.+   ++ +.+  .|++||.+++|++.+|
T Consensus        93 ~~l~----~~~~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~-~~~--~l~~GD~i~i~~~~~H  162 (192)
T 1y9q_A           93 HTLF----PYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DE-QWH--ELQQGEHIRFFSDQPH  162 (192)
T ss_dssp             EEEE----EEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TT-EEE--EECTTCEEEEECSSSE
T ss_pred             EEec----cCCCCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CC-EEE--EeCCCCEEEEcCCCCe
Confidence            3332    222344678999999999987744432 36899999999999876   33 333  6999999999999999


Q ss_pred             EEEc-CCCCEEEEEEeC
Q 020545          257 AIIA-GPEGIECFSITT  272 (325)
Q Consensus       257 ~~~~-g~~~~~~~~~~~  272 (325)
                      ...| +++.+ ++.+..
T Consensus       163 ~~~n~~~~~~-~l~v~~  178 (192)
T 1y9q_A          163 GYAAVTEKAV-FQNIVA  178 (192)
T ss_dssp             EEEESSSCEE-EEEEEE
T ss_pred             EeECCCCCcE-EEEEEe
Confidence            8766 67777 665543

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.37  E-value=1.1e-06  Score=80.85  Aligned_cols=59  Identities=17%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEeec
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGET   83 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~~   83 (325)
                      |++...|+.||++|+ +.+.+   ++      + ...|++||+++||+|.+|++.|.++ +++++++..+.
T Consensus       199 H~H~~~E~~yVl~G~-~~~~i---~~------~-~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~~~  258 (274)
T 1sef_A          199 ETHVQEHGAYLISGQ-GMYNL---DN------E-WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDA  258 (274)
T ss_dssp             BCCSCCEEEEEEECE-EEEEE---TT------E-EEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEEEC
T ss_pred             eeccCeEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEEcC
Confidence            655778999999999 99988   53      3 5899999999999999999999999 89999988653

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.37  E-value=8.8e-07  Score=75.73  Aligned_cols=56  Identities=14%  Similarity=0.067  Sum_probs=49.4

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      ++.+.+++||++|+ ..+.+   ++      + .+.|++||.++||+|..|.+.|.++++++++.+.
T Consensus       107 ~h~gEE~~yVLeG~-v~vtl---~g------~-~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~Vq  162 (166)
T 2vpv_A          107 SFRTYITFHVIQGI-VEVTV---CK------N-KFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQ  162 (166)
T ss_dssp             CCSEEEEEEEEESE-EEEEE---TT------E-EEEEETTCEEEECTTCEEEEEECSSSCEEEEEEE
T ss_pred             CCCceEEEEEEEeE-EEEEE---CC------E-EEEEcCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            55789999999999 99988   52      3 5899999999999999999999999999888764

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.36  E-value=2.7e-07  Score=71.91  Aligned_cols=62  Identities=13%  Similarity=0.079  Sum_probs=49.2

Q ss_pred             eccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545           11 VCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV   80 (325)
Q Consensus        11 ~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~   80 (325)
                      +-.| |....++.||++|+ +.+..  .++     ......+++||.+++|+|..|.+.|.|+++|+++-+
T Consensus        30 ~~~H~H~~~~e~~~v~~G~-~~v~~--~d~-----~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~IeV   92 (98)
T 3lag_A           30 TGHHTHGMDYVVVPMADGE-MTIVA--PDG-----TRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLEI   92 (98)
T ss_dssp             CCSEECCSCEEEEESSCBC--CEEC--TTS-----CEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEEE
T ss_pred             cCcEECCCcEEEEEEeccE-EEEEe--CCC-----ceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEEE
Confidence            3345 55567888999999 87754  332     344578999999999999999999999999999877

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.36  E-value=2e-06  Score=73.48  Aligned_cols=72  Identities=19%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             cceEEEEEecC-CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          192 GLSCTILKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       192 gis~~~v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      -+++..++|.| |+...|+.|.++.++.||++|+..+++   ++ +.+  .|++||.++||+|.+|.+.| +++.++++.
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl---~g-~~~--~L~~Gds~~iP~g~~H~~~N~~d~~Arll~  160 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV---CK-NKF--LSVKGSTFQIPAFNEYAIANRGNDEAKMFF  160 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE---TT-EEE--EEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE---CC-EEE--EEcCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence            36777899999 888899988899999999999999988   23 344  69999999999999998665 777776554

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.36  E-value=2.2e-06  Score=67.56  Aligned_cols=71  Identities=11%  Similarity=0.211  Sum_probs=56.1

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      ++.+....+.+|.-..+|||+ ..|+.||++|++.+.+   ++ +.  ..|++||++++|+|.+|...+. +++.++.+
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~-~~e~~~vl~G~~~~~i---~~-~~--~~l~~Gd~i~i~~~~~H~~~~~-~~~~~~~i  107 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYF-GDTLYLILQGEAVITF---DD-QK--IDLVPEDVLMVPAHKIHAIAGK-GRFKMLQI  107 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCS-SCEEEEEEEEEEEEEE---TT-EE--EEECTTCEEEECTTCCBEEEEE-EEEEEEEE
T ss_pred             CceEEEEEECCCCccccEECC-CCeEEEEEeCEEEEEE---CC-EE--EEecCCCEEEECCCCcEEEEeC-CCcEEEEE
Confidence            356777888999999999986 6899999999999876   33 33  3699999999999999987664 35555443

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.35  E-value=2.1e-06  Score=67.73  Aligned_cols=62  Identities=10%  Similarity=-0.031  Sum_probs=50.5

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ..-.-+|+++..|+.||++|+ +.+.+   ++      + ...+++||++++|+|.+|.+.|.+  +.+++.++.
T Consensus        44 g~~~~~H~H~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~v~~  105 (116)
T 2pfw_A           44 GAEGYVHAHRHSQVSYVVEGE-FHVNV---DG------V-IKVLTAGDSFFVPPHVDHGAVCPT--GGILIDTFS  105 (116)
T ss_dssp             TEEEEEECCSSEEEEEEEEEC-EEEEE---TT------E-EEEECTTCEEEECTTCCEEEEESS--CEEEEEEEE
T ss_pred             CCcCCcEECCcceEEEEEeeE-EEEEE---CC------E-EEEeCCCCEEEECcCCceeeEeCC--CcEEEEEEC
Confidence            344556766789999999999 98887   42      3 578999999999999999999987  567777763

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.34  E-value=1.4e-06  Score=68.00  Aligned_cols=70  Identities=16%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      ..++.+.||.. .+|||+...|+.||++|++.+.+-+  ++ .+  .|++||++++|+|.+|...+. +++.++.+.
T Consensus        30 ~~~~~~~~g~~-~~H~H~~~~E~~~Vl~G~~~~~~~~--~~-~~--~l~~Gd~~~ip~~~~H~~~~~-~~~~~l~i~   99 (107)
T 2i45_A           30 QFHLVKLLGDY-GWHTHGYSDKVLFAVEGDMAVDFAD--GG-SM--TIREGEMAVVPKSVSHRPRSE-NGCSLVLIE   99 (107)
T ss_dssp             EEEEEEEEEEC-CCBCC--CCEEEEESSSCEEEEETT--SC-EE--EECTTEEEEECTTCCEEEEEE-EEEEEEEEE
T ss_pred             EEEEEECCCCC-cceeCCCCCEEEEEEeCEEEEEECC--Cc-EE--EECCCCEEEECCCCcEeeEeC-CCeEEEEEE
Confidence            44566778874 5999988899999999999987632  12 23  599999999999999987663 345555543

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.34  E-value=2.2e-06  Score=67.43  Aligned_cols=61  Identities=13%  Similarity=0.146  Sum_probs=48.7

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      ..-+-+|+++..|+.||++|+ +.+.+   ++      + ...+++||++++|+|.+|++.|.+  +++++++.
T Consensus        50 g~~~~~H~H~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~~~v~  110 (115)
T 1yhf_A           50 GQEIGRHSSPGDAMVTILSGL-AEITI---DQ------E-TYRVAEGQTIVMPAGIPHALYAVE--AFQMLLVV  110 (115)
T ss_dssp             TCEEEEECCSSEEEEEEEESE-EEEEE---TT------E-EEEEETTCEEEECTTSCEEEEESS--CEEEEEEE
T ss_pred             CCccCCEECCCcEEEEEEeCE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEECC--CceEEEEE
Confidence            334556766788999999999 98877   42      3 478999999999999999999987  45555554

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.33  E-value=8.2e-07  Score=76.40  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=50.8

Q ss_pred             eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ..+|.+...|+.||++|+ ..+.+   ++     .+ .+.|++||.+ ||+|.+|.+.|.+++++++++++.
T Consensus        92 ~~~H~H~~eE~~~VLeGe-l~l~l---d~-----ge-~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~  152 (172)
T 3es1_A           92 SPMHRTNSIDYGIVLEGE-IELEL---DD-----GA-KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILI  152 (172)
T ss_dssp             CCCBCCSEEEEEEEEESC-EEEEC---GG-----GC-EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEE
T ss_pred             CCCeecCceEEEEEEeCE-EEEEE---CC-----Ce-EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEc
Confidence            345666677899999999 88766   31     13 4789999999 999999999999999999999885

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.33  E-value=1.3e-06  Score=73.54  Aligned_cols=58  Identities=14%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .|+|.+.+|+.||++|+ ..+.+   ++      + ...|++||+++||+|..|.+.|.  ++++++++..
T Consensus        78 ~~~~~~~eE~~yVLeG~-~~l~i---~g------~-~~~l~~GD~i~iP~G~~h~~~n~--~~a~~l~V~~  135 (151)
T 4axo_A           78 FDWTLNYDEIDYVIDGT-LDIII---DG------R-KVSASSGELIFIPKGSKIQFSVP--DYARFIYVTY  135 (151)
T ss_dssp             EEEECSSEEEEEEEEEE-EEEEE---TT------E-EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEEE
T ss_pred             ccEeCCCcEEEEEEEeE-EEEEE---CC------E-EEEEcCCCEEEECCCCEEEEEeC--CCEEEEEEEC
Confidence            35677789999999999 98886   43      3 58899999999999999999997  6788888874

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.32  E-value=7.4e-07  Score=81.24  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=48.2

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEeecC
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGETS   84 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~~~   84 (325)
                      |+...|+.||++|+ +.+.+   ++      + .+.|++||++++|+|.+|++.|.|+ ++++++++.|.+
T Consensus       197 H~~~~E~~~Vl~G~-~~~~i---~~------~-~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~d~~  256 (261)
T 1rc6_A          197 THVQEHGAYILSGQ-GVYNL---DN------N-WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCN  256 (261)
T ss_dssp             EESSCEEEEEEESE-EEEES---SS------C-EEEEETTCEEEECSSEEEEEEEC----CEEEEEEEECS
T ss_pred             CCCceEEEEEEEeE-EEEEE---CC------E-EEEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEEecCC
Confidence            44678999999999 88876   43      3 5789999999999999999999999 999999887643

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.32  E-value=3.4e-07  Score=79.31  Aligned_cols=66  Identities=14%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ++-+|+++..|+.||++|+ |.+.+. .++     +.....+++||+++||+|+.||+.+..+..++.+.+|.
T Consensus        92 ~~~~H~H~~~Ei~~Vl~G~-g~~~i~-~~d-----~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~  157 (179)
T 1zrr_A           92 FLNEHTHGEDEVRFFVEGA-GLFCLH-IGD-----EVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFD  157 (179)
T ss_dssp             HHSCBEESSCEEEEEEESC-CCCCEE-CSS-----CEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEEC
T ss_pred             cccceECChheEEEEEcce-EEEEEE-eCC-----EEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEecc
Confidence            3556766679999999999 999876 232     44346799999999999999999887666788887774

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.31  E-value=1.2e-06  Score=70.33  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             cccCCCCe-EEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           13 LTENDLHV-IPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        13 p~h~~a~e-i~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +|+++..+ ++||++|+ +.+.+   ++      + ...+++||+++||+|.+|++.|.++++++++++..
T Consensus        42 ~H~H~~~e~~~~vl~G~-~~~~i---~~------~-~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i~~  101 (125)
T 3cew_A           42 VHSHKQNEEIYGILSGK-GFITI---DG------E-KIELQAGDWLRIAPDGKRQISAASDSPIGFLCIQV  101 (125)
T ss_dssp             EEEESSEEEEEEEEEEE-EEEEE---TT------E-EEEEETTEEEEECTTCCEEEEEBTTBCEEEEEEEE
T ss_pred             CccCCCceEEEEEEeCE-EEEEE---CC------E-EEEeCCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence            56555555 55599999 99887   42      3 58899999999999999999999988998887764

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.30  E-value=1.9e-06  Score=70.99  Aligned_cols=70  Identities=11%  Similarity=0.280  Sum_probs=56.2

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+.+..+.++||   ..|||....|+.||++|++.+++   +|+ .+  .|++||++++|+|..|...+ ++.++++.+.
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~---~g~-~~--~l~~GD~i~~p~g~~h~~~~-~~~~~~l~v~  125 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRH---EGE-TM--IAKAGDVMFIPKGSSIEFGT-PTSVRFLYVA  125 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEE---TTE-EE--EEETTCEEEECTTCEEEEEE-EEEEEEEEEE
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEE---CCE-EE--EECCCcEEEECCCCEEEEEe-CCCEEEEEEE
Confidence            578999999999   46799889999999999999887   243 33  69999999999999987654 4456655544

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.30  E-value=2.4e-06  Score=65.47  Aligned_cols=60  Identities=22%  Similarity=0.275  Sum_probs=46.2

Q ss_pred             CccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          204 AMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       204 ~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      +...+|||+...|+.||++|++++.+-   ++ .  ..+++||+++||+|.+|...+. +++.++.+
T Consensus        40 ~~~~~H~H~~~~e~~~v~~G~~~~~~~---~~-~--~~l~~Gd~~~ip~~~~H~~~~~-~~~~~l~i   99 (102)
T 3d82_A           40 GEFVWHEHADTDEVFIVMEGTLQIAFR---DQ-N--ITLQAGEMYVIPKGVEHKPMAK-EECKIMII   99 (102)
T ss_dssp             EECCCBCCTTCCEEEEEEESEEEEECS---SC-E--EEEETTEEEEECTTCCBEEEEE-EEEEEEEE
T ss_pred             CCCCceeCCCCcEEEEEEeCEEEEEEC---CE-E--EEEcCCCEEEECCCCeEeeEcC-CCCEEEEE
Confidence            457899999889999999999988752   22 2  3599999999999999987664 24444433

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.30  E-value=4e-06  Score=79.84  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             cceEEEEEecCCCccC---CeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEE
Q 020545          192 GLSCTILKLDANAMLS---PTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIEC  267 (325)
Q Consensus       192 gis~~~v~l~pg~~~~---Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~  267 (325)
                      .+.+. ..+.|++-..   +|||++..|+.||++|++++.+=+.+|.+ -...|++||.++||+|.+|...| +++. ++
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~-~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~  123 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQ-QTRVLSSGDYGSVPRNVTHTFQIQDPDT-EM  123 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCC-EEEEEETTCEEEECTTEEEEEEECSTTE-EE
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCce-EEEEECCCCEEEECCCCcEEEEeCCCCC-EE
Confidence            35666 5666766555   89999999999999999999887744432 23469999999999999998766 5554 66


Q ss_pred             EEEeCCCC
Q 020545          268 FSITTSTR  275 (325)
Q Consensus       268 ~~~~~s~~  275 (325)
                      +.+++...
T Consensus       124 l~v~~p~~  131 (350)
T 1juh_A          124 TGVIVPGG  131 (350)
T ss_dssp             EEEEESSC
T ss_pred             EEEEcCcc
Confidence            66655443

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.29  E-value=3.8e-06  Score=81.19  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=65.0

Q ss_pred             cccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc--CCCCEEE
Q 020545          190 QVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA--GPEGIEC  267 (325)
Q Consensus       190 ~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~--g~~~~~~  267 (325)
                      +-.+.+....|.||....+|.|... |+.||++|+|.++.++  |+ .+  .+++||++++|.|..|...|  |++++.|
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~~-ev~~IleG~G~~t~v~--G~-~~--~~~~GD~i~~P~g~~H~~~N~~gde~l~~  193 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAAS-ALRFIMEGSGAYTIVD--GH-KV--ELGANDFVLTPNGTWHEHGILESGTECIW  193 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESSC-EEEEEEECSCEEEEET--TE-EE--EECTTCEEEECTTCCEEEEECTTCCCEEE
T ss_pred             CCeeEEEEEEECCCCCcCCccCCcc-eEEEEEEeeEEEEEEC--CE-EE--EEcCCCEEEECcCCCEEEEcCCCCCCEEE
Confidence            3468899999999999999999765 9999999999776664  43 33  59999999999999998655  7889999


Q ss_pred             EEEeC
Q 020545          268 FSITT  272 (325)
Q Consensus       268 ~~~~~  272 (325)
                      +.+.+
T Consensus       194 l~v~d  198 (394)
T 3bu7_A          194 QDGLD  198 (394)
T ss_dssp             EEEEC
T ss_pred             EEccc
Confidence            98664

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.27  E-value=2.2e-06  Score=73.73  Aligned_cols=80  Identities=13%  Similarity=0.022  Sum_probs=66.2

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      .|..+.+++|.||+-..+|.|. ..|+.||++|++.+.+=+  |+ .  ..|++||.+ +|+|.+|...| +++.++++.
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~-~eE~~~VLeGel~l~ld~--ge-~--~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~  149 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTN-SIDYGIVLEGEIELELDD--GA-K--RTVRQGGII-VQRGTNHLWRNTTDKPCRIAF  149 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCS-EEEEEEEEESCEEEECGG--GC-E--EEECTTCEE-EECSCCBEEECCSSSCEEEEE
T ss_pred             CCeEEEEEEECCCCCCCCeecC-ceEEEEEEeCEEEEEECC--Ce-E--EEECCCCEE-EeCCCcEEEEeCCCCCEEEEE
Confidence            3788999999999999999985 678999999999987531  32 2  359999999 99999998766 788899988


Q ss_pred             EeCCCCCc
Q 020545          270 ITTSTRPA  277 (325)
Q Consensus       270 ~~~s~~p~  277 (325)
                      +.+-..|.
T Consensus       150 V~~P~~p~  157 (172)
T 3es1_A          150 ILIEAPAY  157 (172)
T ss_dssp             EEEECCCC
T ss_pred             EEcCCCce
Confidence            88777764

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.27  E-value=3e-06  Score=76.43  Aligned_cols=64  Identities=8%  Similarity=-0.125  Sum_probs=54.3

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ..-+-+|++...|++||++|+ +.+.+   ++      + ...|++||.+++|+|.+|.+.|.++++++++.++.
T Consensus       156 g~~~~~H~H~~~e~~~Vl~G~-~~~~i---~~------~-~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~  219 (243)
T 3h7j_A          156 GGEMPFHKHRNEQIGICIGGG-YDMTV---EG------C-TVEMKFGTAYFCEPREDHGAINRSEKESKSINIFF  219 (243)
T ss_dssp             TEEEEEECCSSEEEEEECSSC-EEEEE---TT------E-EEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEE
T ss_pred             CCcCCCEeCCCcEEEEEEECE-EEEEE---CC------E-EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEc
Confidence            344456766678999999999 98887   53      3 47899999999999999999999999999998885

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.24  E-value=4.2e-06  Score=75.72  Aligned_cols=60  Identities=12%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      +++...+.+||++|+ +.+.+   ++      + .+.|++||.++++++.+|+++|.|+++++++.+-|.+
T Consensus       182 ~~h~~ee~~~vLeG~-~~~~~---~~------~-~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~~kd~~  241 (246)
T 1sfn_A          182 EVHYMEHGLLMLEGE-GLYKL---EE------N-YYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMN  241 (246)
T ss_dssp             BCCSSCEEEEEEECE-EEEEE---TT------E-EEEEETTCEEEECTTCCEEEEEESSSCEEEEEEEECS
T ss_pred             cCCCceEEEEEEECE-EEEEE---CC------E-EEEcCCCCEEEECCCCCEEEEcCCCCCEEEEEEEecc
Confidence            345678999999999 98888   53      3 5799999999999999999999999999999887754

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.23  E-value=3.9e-06  Score=76.96  Aligned_cols=59  Identities=14%  Similarity=0.207  Sum_probs=51.5

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      ||+...+.+||++|+ |++.+   ++      + ...|++||++++|++.+||++|.|+++++.+.--|.
T Consensus       203 e~H~~eh~~~vL~G~-g~y~l---~~------~-~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl~ykd~  261 (266)
T 4e2q_A          203 EVHYNQHGLLLLEGQ-GIYRL---GD------N-WYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDV  261 (266)
T ss_dssp             CCCSCCEEEEEEECE-EEEEE---TT------E-EEEEETTCEEEECTTCCEEEEEESSSCEEEEEEEEC
T ss_pred             eEcccceEEEEEece-EEEEE---CC------E-EEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEccc
Confidence            566678999999999 99988   53      3 588999999999999999999999999999876654

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.23  E-value=9.4e-06  Score=64.40  Aligned_cols=78  Identities=18%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             ccccceEEEEEecCCCccCCe--ecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCC-C
Q 020545          189 EQVGLSCTILKLDANAMLSPT--YTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPE-G  264 (325)
Q Consensus       189 ~~~gis~~~v~l~pg~~~~Ph--~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~-~  264 (325)
                      ++-++.+.++. .+|....++  +|....|+.||++|++++.+=+   +.. ...|++||.++||+|.+|...| +++ .
T Consensus        27 ~~~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~---~~~-~~~l~~Gd~i~ipa~~~H~~~n~~~~~~  101 (112)
T 2opk_A           27 ERKGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIECEG---DTA-PRVMRPGDWLHVPAHCRHRVAWTDGGEP  101 (112)
T ss_dssp             EETTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEETT---CSS-CEEECTTEEEEECTTCCEEEEEECSSSC
T ss_pred             cCCCEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEECC---EEE-EEEECCCCEEEECCCCcEEEEeCCCCCC
Confidence            44456666664 345455553  6667889999999999988622   210 1359999999999999998766 654 5


Q ss_pred             EEEEEEe
Q 020545          265 IECFSIT  271 (325)
Q Consensus       265 ~~~~~~~  271 (325)
                      +.|+.++
T Consensus       102 ~~~l~v~  108 (112)
T 2opk_A          102 TVWLAVH  108 (112)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7777665

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.22  E-value=3.1e-06  Score=81.02  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      -.|.+....|.||+...+|-|. ..++.||++|+|....++  |. .+  .+++||++++|.|..|...| |++++.|+.
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~-~~ev~~VleG~G~~~~vd--G~-~~--~~~~GD~v~iP~g~~H~~~N~gde~l~~l~  174 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVVN--GD-PV--RMSRGDLLLTPGWCFHGHMNDTDQPMAWID  174 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEES-SCEEEECSSCEEEEEEET--TE-EE--EEETTCEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             CceEEEEEEECCCCccCceecc-cceEEEEEecceEEEEEC--CE-EE--EEeCCCEEEECCCCcEEeEeCCCCCeEEEE
Confidence            4689999999999999999997 469999999999645554  43 33  59999999999999998655 889999998


Q ss_pred             EeCC
Q 020545          270 ITTS  273 (325)
Q Consensus       270 ~~~s  273 (325)
                      +.+.
T Consensus       175 v~D~  178 (368)
T 3nw4_A          175 GLDI  178 (368)
T ss_dssp             EECH
T ss_pred             ecch
Confidence            8753

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.22  E-value=3e-06  Score=66.83  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=47.3

Q ss_pred             eccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           11 VCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        11 ~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      +-+|+++..|+.||++|+ +.+.+   ++      + .+.|++||.+++|+|.+|.+.|.  ++++++++.
T Consensus        51 ~~~H~h~~~e~~~vl~G~-~~~~i---~~------~-~~~l~~Gd~i~i~~~~~H~~~~~--~~~~~~~i~  108 (114)
T 2ozj_A           51 VSEEEYFGDTLYLILQGE-AVITF---DD------Q-KIDLVPEDVLMVPAHKIHAIAGK--GRFKMLQIT  108 (114)
T ss_dssp             CCCBCCSSCEEEEEEEEE-EEEEE---TT------E-EEEECTTCEEEECTTCCBEEEEE--EEEEEEEEE
T ss_pred             cccEECCCCeEEEEEeCE-EEEEE---CC------E-EEEecCCCEEEECCCCcEEEEeC--CCcEEEEEE
Confidence            345766789999999999 99887   53      3 58899999999999999999997  456666654

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.21  E-value=9.5e-07  Score=76.49  Aligned_cols=67  Identities=19%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCC-CEEEEEEeCCC
Q 020545          205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPE-GIECFSITTST  274 (325)
Q Consensus       205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~-~~~~~~~~~s~  274 (325)
                      ...+|+|+. .|+.||++|+|.+.+. .++ +.++..+++||+++||+|..|+..++++ .+.++.+|...
T Consensus        92 ~~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~d-~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~  159 (179)
T 1zrr_A           92 FLNEHTHGE-DEVRFFVEGAGLFCLH-IGD-EVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP  159 (179)
T ss_dssp             HHSCBEESS-CEEEEEEESCCCCCEE-CSS-CEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred             cccceECCh-heEEEEEcceEEEEEE-eCC-EEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence            467899986 8999999999999887 333 3455579999999999999999777554 47788777654

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.20  E-value=4e-06  Score=68.97  Aligned_cols=57  Identities=19%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ++|...+|++||++|+ +.+.+   ++      + ...|++||+++||+|..|.+.|.  ++++++++..
T Consensus        70 ~~h~~~~E~~~VLeG~-~~l~~---~g------~-~~~l~~GD~i~~p~g~~h~~~~~--~~~~~l~v~~  126 (133)
T 2pyt_A           70 PWTLNYDEIDMVLEGE-LHVRH---EG------E-TMIAKAGDVMFIPKGSSIEFGTP--TSVRFLYVAW  126 (133)
T ss_dssp             EEECSSEEEEEEEEEE-EEEEE---TT------E-EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEEE
T ss_pred             cccCCCCEEEEEEECE-EEEEE---CC------E-EEEECCCcEEEECCCCEEEEEeC--CCEEEEEEEc
Confidence            3455689999999999 88887   43      3 47899999999999999999874  5788888763

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.19  E-value=2.4e-06  Score=66.93  Aligned_cols=51  Identities=18%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCE
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDV   75 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l   75 (325)
                      |.+..|++||++|+ +.+.+   ++     .+ ...|++||+++||+|.+|.+.|.++.+.
T Consensus        46 hH~~~E~~~Vl~G~-~~~~i---~~-----g~-~~~l~~GD~i~ip~g~~H~~~n~~~~~~   96 (101)
T 1o5u_A           46 YYDTNETCYILEGK-VEVTT---ED-----GK-KYVIEKGDLVTFPKGLRCRWKVLEPVRK   96 (101)
T ss_dssp             ECSSCEEEEEEEEE-EEEEE---TT-----CC-EEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             cCCceEEEEEEeCE-EEEEE---CC-----CC-EEEECCCCEEEECCCCcEEEEeCCCeeE
Confidence            45689999999999 88887   31     12 5789999999999999999999866433

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.18  E-value=2.9e-06  Score=66.22  Aligned_cols=56  Identities=11%  Similarity=0.216  Sum_probs=43.6

Q ss_pred             cccCCC-CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545           13 LTENDL-HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV   80 (325)
Q Consensus        13 p~h~~a-~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~   80 (325)
                      +|++.. .|+.||++|+ +.+.+   ++     .+ ...+++||++++|+|.+|++.|.  ++++++++
T Consensus        42 ~H~H~~~~E~~~Vl~G~-~~~~~---~~-----~~-~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~i   98 (107)
T 2i45_A           42 WHTHGYSDKVLFAVEGD-MAVDF---AD-----GG-SMTIREGEMAVVPKSVSHRPRSE--NGCSLVLI   98 (107)
T ss_dssp             CBCC--CCEEEEESSSC-EEEEE---TT-----SC-EEEECTTEEEEECTTCCEEEEEE--EEEEEEEE
T ss_pred             ceeCCCCCEEEEEEeCE-EEEEE---CC-----Cc-EEEECCCCEEEECCCCcEeeEeC--CCeEEEEE
Confidence            565555 9999999999 88877   31     13 58899999999999999999995  45666654

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.15  E-value=4.4e-06  Score=77.05  Aligned_cols=60  Identities=10%  Similarity=0.145  Sum_probs=52.3

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      ||+.-.+.+||++|+ |.+.+   ++      + ...|++||++++++|.+|+++|.|+++++++.+.|.+
T Consensus       208 ~~h~~e~~~~il~G~-~~~~~---~~------~-~~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~~~d~n  267 (278)
T 1sq4_A          208 ETHVMEHGLYVLEGK-AVYRL---NQ------D-WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVN  267 (278)
T ss_dssp             CCCSEEEEEEEEECE-EEEEE---TT------E-EEEEETTCEEEEEESCCEEEECCSSSCEEEEEEEECS
T ss_pred             CCCCccEEEEEEeCE-EEEEE---CC------E-EEEeCCCCEEEECCCCCEEEEcCCCCCEEEEEEEEcC
Confidence            444557899999999 88887   53      4 5899999999999999999999999999999998864

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.15  E-value=7.5e-06  Score=68.89  Aligned_cols=85  Identities=13%  Similarity=0.258  Sum_probs=60.7

Q ss_pred             CeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      +.++..+-+...    .-.+++...+++ ++  ..+||.+..|+.||++|++.+++   +|+ .+  .|++||+++||+|
T Consensus        51 ~v~i~~l~s~~~----~~~~s~g~~~~e-~~--~~~~~~~~eE~~yVLeG~~~l~i---~g~-~~--~l~~GD~i~iP~G  117 (151)
T 4axo_A           51 VVYTKDLFTLEE----SPRLGCGMMEMK-ET--TFDWTLNYDEIDYVIDGTLDIII---DGR-KV--SASSGELIFIPKG  117 (151)
T ss_dssp             CEEEEECSCTTT----CSSCEEEEEEEE-EE--EEEEECSSEEEEEEEEEEEEEEE---TTE-EE--EEETTCEEEECTT
T ss_pred             CEEEEEeecCCC----CCcEEEEEEEEc-Cc--cccEeCCCcEEEEEEEeEEEEEE---CCE-EE--EEcCCCEEEECCC
Confidence            355555543332    114678888887 33  25799999999999999999996   443 33  5999999999999


Q ss_pred             cEEEEEcCCCCEEEEEEeC
Q 020545          254 FVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       254 ~~h~~~~g~~~~~~~~~~~  272 (325)
                      ..|...+- +.++++.+.+
T Consensus       118 ~~h~~~n~-~~a~~l~V~~  135 (151)
T 4axo_A          118 SKIQFSVP-DYARFIYVTY  135 (151)
T ss_dssp             CEEEEEEE-EEEEEEEEEE
T ss_pred             CEEEEEeC-CCEEEEEEEC
Confidence            99876554 5677666554

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.13  E-value=1.1e-05  Score=68.27  Aligned_cols=56  Identities=13%  Similarity=0.107  Sum_probs=47.2

Q ss_pred             ccccC-CCCeEEEEEe--CCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           12 CLTEN-DLHVIPIIIP--CELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        12 ~p~h~-~a~ei~yV~~--G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .+|++ ...|++||++  |+ |.+.+   ++      + .+.|++||+++||+|..|++.+    +++++|++.
T Consensus        59 ~~H~H~~~~E~~yVLe~~G~-g~v~i---dg------e-~~~l~~GD~v~IPpg~~H~i~g----~l~~L~I~~  117 (157)
T 4h7l_A           59 RTHYHREHQEIYVVLDHAAH-ATIEL---NG------Q-SYPLTKLLAISIPPLVRHRIVG----EATIINIVS  117 (157)
T ss_dssp             CCBBCSSCEEEEEEEEECTT-CEEEE---TT------E-EEECCTTEEEEECTTCCEEEES----CEEEEEEEE
T ss_pred             cceECCCCcEEEEEEecCcE-EEEEE---CC------E-EEEeCCCCEEEECCCCeEeeEC----CEEEEEEEC
Confidence            45644 5679999999  99 99988   53      3 5899999999999999999973    799999885

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.13  E-value=4.5e-06  Score=63.93  Aligned_cols=57  Identities=14%  Similarity=0.208  Sum_probs=44.7

Q ss_pred             eccccCCC-CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545           11 VCLTENDL-HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV   80 (325)
Q Consensus        11 ~~p~h~~a-~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~   80 (325)
                      .-+|+++. .|+.||++|+ +.+.+   ++      + ...+++||+++||+|..|.+.|.+  +.+++.+
T Consensus        42 ~~~H~H~~~~e~~~v~~G~-~~~~~---~~------~-~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~i   99 (102)
T 3d82_A           42 FVWHEHADTDEVFIVMEGT-LQIAF---RD------Q-NITLQAGEMYVIPKGVEHKPMAKE--ECKIMII   99 (102)
T ss_dssp             CCCBCCTTCCEEEEEEESE-EEEEC---SS------C-EEEEETTEEEEECTTCCBEEEEEE--EEEEEEE
T ss_pred             CCceeCCCCcEEEEEEeCE-EEEEE---CC------E-EEEEcCCCEEEECCCCeEeeEcCC--CCEEEEE
Confidence            34675555 9999999999 88876   42      2 478999999999999999999974  4555544

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.06  E-value=9e-06  Score=63.07  Aligned_cols=62  Identities=10%  Similarity=0.139  Sum_probs=45.7

Q ss_pred             ceeeccccCCC-CeE-EEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            8 HIIVCLTENDL-HVI-PIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         8 ~~~~~p~h~~a-~ei-~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      ..-+-+|.++. .|+ .||++|+ +.+.+   ++     .+ ...|++||++++|+|..|++.|.++  .+++.++
T Consensus        43 g~~~~~H~H~~~~e~~~~vl~G~-~~~~~---~~-----~~-~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~l~~~  106 (110)
T 2q30_A           43 GQELPVHSHNIEGELNIVVLEGE-GEFVG---DG-----DA-VIPAPRGAVLVAPISTPHGVRAVTD--MKVLVTI  106 (110)
T ss_dssp             TCEEEEECCSSSCEEEEEEEESC-EEEEC---GG-----GC-EEEECTTEEEEEETTSCEEEEESSS--EEEEEEE
T ss_pred             CCcCCcccCCCCccEEEEEEeCE-EEEEe---CC-----CE-EEEECCCCEEEeCCCCcEEEEEcCC--cEEEEEE
Confidence            33444565553 688 8999999 88776   30     12 4789999999999999999999876  4555554

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.06  E-value=2e-05  Score=70.22  Aligned_cols=99  Identities=14%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             ceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce
Q 020545          157 LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL  236 (325)
Q Consensus       157 ~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~  236 (325)
                      ..+|+|.+.-+-.  +.++.-+.+       ++.-++.+.++.+.+|.-..+|-|| ..++.||++|++++++=   |+.
T Consensus        10 ~~~~~l~~~~~~~--~~~~~sr~l-------~~~~~~~~~~~~~~~G~~~~~h~h~-~~~~~~Vl~G~~~~~i~---~~~   76 (227)
T 3rns_A           10 AKPINFNRLITSK--EAEVVSMRI-------LNQPNSYISLFSLAKDEEITAEAML-GNRYYYCFNGNGEIFIE---NNK   76 (227)
T ss_dssp             SSCEEHHHHCCCC--TTCEEEEEE-------EECSSEEEEEEEECTTCEEEECSCS-SCEEEEEEESEEEEEES---SCE
T ss_pred             cceEcHHHcCCcC--CCCEEEEeh-------hcCCCcEEEEEEECCCCccCccccC-CCEEEEEEeCEEEEEEC---CEE
Confidence            3578887644321  222322332       2233568899999999999999996 78999999999999872   332


Q ss_pred             EEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeC
Q 020545          237 VLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       237 ~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~  272 (325)
                         ..|++||++++|+|.+|...+. +++.++.+..
T Consensus        77 ---~~l~~Gd~~~~p~~~~H~~~a~-~~~~~l~i~~  108 (227)
T 3rns_A           77 ---KTISNGDFLEITANHNYSIEAR-DNLKLIEIGE  108 (227)
T ss_dssp             ---EEEETTEEEEECSSCCEEEEES-SSEEEEEEEE
T ss_pred             ---EEECCCCEEEECCCCCEEEEEC-CCcEEEEEEe
Confidence               3699999999999999998764 4677776643

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.01  E-value=3.4e-05  Score=72.74  Aligned_cols=77  Identities=13%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             eEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecC-c---cEEEECCccEEEEEc-CCCCEEEE
Q 020545          194 SCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEA-G---QLLVVPRCFVVAIIA-GPEGIECF  268 (325)
Q Consensus       194 s~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~-G---dv~vvP~G~~h~~~~-g~~~~~~~  268 (325)
                      -....+++||.++.-|||.+..|+.+|++|++++.+-++...+.+.  +.. |   |+++||.|+.|-+.| |+++++++
T Consensus       273 q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~  350 (369)
T 3st7_A          273 QVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIE--YYVSGDKLEVVDIPVGYTHNIENLGDTDMVTI  350 (369)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEE--EEEETTBCCEEEECTTEEEEEEECSSSCEEEE
T ss_pred             eEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEE--EEecCCcceEEEeCCCceEEeEEcCCCcEEEE
Confidence            3556788999999999999999999999999999998776545554  444 6   999999999999777 77888877


Q ss_pred             EEeC
Q 020545          269 SITT  272 (325)
Q Consensus       269 ~~~~  272 (325)
                      ..-+
T Consensus       351 ~~~~  354 (369)
T 3st7_A          351 MWVN  354 (369)
T ss_dssp             EEES
T ss_pred             EecC
Confidence            6654

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.88  E-value=5.8e-05  Score=64.42  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=44.0

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG   71 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g   71 (325)
                      ||++.+|++||++|+ ..+.+.+.+      +.+...|++||+|++|+|++|+=+..+
T Consensus        51 H~h~~dE~FyvlkG~-m~i~v~d~g------~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           51 HDDPLEEFFYQLRGN-AYLNLWVDG------RRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             EECSSCEEEEEEESC-EEEEEEETT------EEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             cCCCCceEEEEEeeE-EEEEEEcCC------ceeeEEECCCCEEEeCCCCCcCccccC
Confidence            666889999999999 999998744      345689999999999999999987754

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=97.87  E-value=4.4e-05  Score=67.60  Aligned_cols=96  Identities=19%  Similarity=0.104  Sum_probs=75.2

Q ss_pred             CCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCcc
Q 020545          167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQ  246 (325)
Q Consensus       167 p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gd  246 (325)
                      +++.+ +.|....+.+... . ..-++.+..+.|.||.....|-|+ +.|+.||++|++.+.+-+  + ..+  .+++||
T Consensus       109 ~~f~~-~~a~~elvGP~g~-~-~s~~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~~--g-~~~--~l~pGd  179 (217)
T 4b29_A          109 RDFLN-RFGWFELAGPSGH-F-LTQSLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLRN--A-PDL--MLEPGQ  179 (217)
T ss_dssp             HHHHH-HEEEEEEEETTSS-E-ECSSCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEETT--S-CCE--EECTTC
T ss_pred             hhHHh-CceEEEEECCCCC-C-CCCeEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEECC--C-CEE--ecCCCC
Confidence            45554 3588888876543 2 334689999999999999999998 689999999999998742  2 223  599999


Q ss_pred             EEEECCccEEEEEcCCCCEEEEEEe
Q 020545          247 LLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       247 v~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      ++++|.|.+|...++++++..+-+.
T Consensus       180 ~v~ipsgv~Ha~rt~dePllalwvW  204 (217)
T 4b29_A          180 TRFHPANAPHAMTTLTDPILTLVLW  204 (217)
T ss_dssp             EEEECTTCCEEEECCSSCEEEEEEE
T ss_pred             EEEcCCCCceeEEECCccEEEEEEE
Confidence            9999999999998999997644433

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=97.86  E-value=5.1e-05  Score=62.75  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=47.5

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEE
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFV   80 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~   80 (325)
                      .||.++.-++.||++|+ |.+.+   ++      + ...+++||+++||+|.+|.+.+.++ ++.+.+.+
T Consensus        32 ~p~~h~~~~i~~v~~G~-~~~~i---~~------~-~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i   90 (164)
T 2arc_A           32 RPLGMKGYILNLTIRGQ-GVVKN---QG------R-EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (164)
T ss_dssp             ETTCCSSEEEEEEEEEC-EEEEE---TT------E-EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             cccCCCceEEEEEEEeE-EEEEE---CC------E-EEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEE
Confidence            47777888999999999 99988   53      3 5889999999999999999988764 55555544

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=97.85  E-value=8.1e-06  Score=61.19  Aligned_cols=34  Identities=9%  Similarity=-0.004  Sum_probs=31.0

Q ss_pred             cccceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCC
Q 020545            5 LYVHIIVCLT-ENDLHVIPIIIPCELGVAGMVLPND   39 (325)
Q Consensus         5 ~~~~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~   39 (325)
                      |++.+++.|| |++|+||.||++|+ +++++|++.+
T Consensus        43 l~~gg~~~PH~hprA~ei~~V~~G~-~~v~~V~~~g   77 (79)
T 1dgw_X           43 MNEGALFVPHYNSRATVILVANEGR-AEVELVGLEQ   77 (79)
T ss_dssp             ECTTCEEEEEEESSCEEEEEEEESC-EEEEEEEEC-
T ss_pred             EcCCcCcCCccCCCCcEEEEEEece-EEEEEecCCC
Confidence            6889999999 67899999999999 9999999875

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=97.84  E-value=2e-05  Score=65.63  Aligned_cols=99  Identities=11%  Similarity=-0.048  Sum_probs=65.6

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeC
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~  272 (325)
                      -.+.++++.||+...+|+|+. .|..||++|+.+..    .|...-...+++||.+++|.|..|....+.++++++.+++
T Consensus        44 ~~~~~~~~~pG~~~p~H~H~~-~ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~~e~~~~l~~~~  118 (145)
T 2o1q_A           44 SWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSFL  118 (145)
T ss_dssp             EEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEEEEEEEEEEEEE
T ss_pred             cEEEEEEECCCCCCCccCCCC-CEEEEEEEeEEEEc----CCCEecceEeCCCEEEEECcCCccCCeECCCCeEEEEEEC
Confidence            357889999999999999985 56689999999843    3322212468999999999999998433455666666554


Q ss_pred             CCCCceeeecCccccccCCCHHHHHHH
Q 020545          273 STRPALGKLGGKQSVMNGFSASVVQLA  299 (325)
Q Consensus       273 s~~p~~~~laG~~svl~~~~~evla~a  299 (325)
                      -..   .|+....+...-++-+....+
T Consensus       119 gp~---~f~~~~g~~~~~~d~~~~~~~  142 (145)
T 2o1q_A          119 GPL---TFVKPDGSPIAVIGWEDAQGA  142 (145)
T ss_dssp             SCE---EEECTTSCEEEEECHHHHHHH
T ss_pred             Ccc---eecCCCCCEeEEecHHHHHHh
Confidence            332   233333344333444444433

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=97.82  E-value=3.1e-05  Score=62.83  Aligned_cols=61  Identities=10%  Similarity=0.220  Sum_probs=48.1

Q ss_pred             cceEEEEEecCCCccCCeecCCC-CEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          192 GLSCTILKLDANAMLSPTYTADS-VQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A-~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      .+.+....+.||...   ||... .|++||++|++.+.+  .+|+ .+  +|++||++++|+|..|...+
T Consensus        48 ~~~~g~w~~~pG~~~---~~~~~~~E~~~Vl~G~~~l~~--~~g~-~~--~l~~GD~~~ip~g~~h~~~~  109 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ---SNTTGYIEYCHIIEGEARLVD--PDGT-VH--AVKAGDAFIMPEGYTGRWEV  109 (123)
T ss_dssp             TEEEEEEEEEEEEEE---CCCTTEEEEEEEEEEEEEEEC--TTCC-EE--EEETTCEEEECTTCCCEEEE
T ss_pred             CEEEEEEEECCCcee---eEcCCCcEEEEEEEEEEEEEE--CCCe-EE--EECCCCEEEECCCCeEEEEE
Confidence            478888899999765   34444 899999999999886  3443 33  59999999999999987555

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=97.81  E-value=4.1e-05  Score=59.88  Aligned_cols=59  Identities=15%  Similarity=0.300  Sum_probs=45.2

Q ss_pred             eEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          194 SCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       194 s~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      .+....+.||..   +||-...|+.||++|++.+.+  .+++ .+  .|++||++++|+|.+|...+
T Consensus        32 ~~~~~~~~pg~~---~~hH~~~E~~~Vl~G~~~~~i--~~g~-~~--~l~~GD~i~ip~g~~H~~~n   90 (101)
T 1o5u_A           32 KWPIWEKEVSEF---DWYYDTNETCYILEGKVEVTT--EDGK-KY--VIEKGDLVTFPKGLRCRWKV   90 (101)
T ss_dssp             GSCEEEECSEEE---EEECSSCEEEEEEEEEEEEEE--TTCC-EE--EEETTCEEEECTTCEEEEEE
T ss_pred             EEEEEEeCCCcc---cccCCceEEEEEEeCEEEEEE--CCCC-EE--EECCCCEEEECCCCcEEEEe
Confidence            344667788764   355568999999999999987  2133 33  59999999999999998655

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=97.81  E-value=5e-05  Score=67.28  Aligned_cols=65  Identities=8%  Similarity=-0.025  Sum_probs=50.8

Q ss_pred             ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .+.+..-.|++..+|++||++|+ +.+.+   ++     .+ .+.+++||++++|+|.+|++. ++++++.++-+.
T Consensus       140 ~PG~~yP~HsHp~EEiy~VLsG~-~e~~v---~~-----g~-~~~l~pGd~v~ipsgv~Ha~r-t~dePllalwvW  204 (217)
T 4b29_A          140 GPGLDYGWHEHLPEELYSVVSGR-ALFHL---RN-----AP-DLMLEPGQTRFHPANAPHAMT-TLTDPILTLVLW  204 (217)
T ss_dssp             CSSCEEEEEECSSEEEEEEEEEC-EEEEE---TT-----SC-CEEECTTCEEEECTTCCEEEE-CCSSCEEEEEEE
T ss_pred             CCCCcCCCCCCCCceEEEEEeCC-EEEEE---CC-----CC-EEecCCCCEEEcCCCCceeEE-ECCccEEEEEEE
Confidence            34445445555689999999999 88888   42     23 478999999999999999996 688998766555

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=97.76  E-value=3.2e-05  Score=62.67  Aligned_cols=45  Identities=22%  Similarity=0.265  Sum_probs=37.8

Q ss_pred             CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCC
Q 020545           19 HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS   73 (325)
Q Consensus        19 ~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~   73 (325)
                      +|++||++|+ +.+.+  .++      + ...|++||+++||+|..|.|.|.++.
T Consensus        69 ~E~~~Vl~G~-~~l~~--~~g------~-~~~l~~GD~~~ip~g~~h~~~~~~~~  113 (123)
T 3bcw_A           69 IEYCHIIEGE-ARLVD--PDG------T-VHAVKAGDAFIMPEGYTGRWEVDRHV  113 (123)
T ss_dssp             EEEEEEEEEE-EEEEC--TTC------C-EEEEETTCEEEECTTCCCEEEEEEEE
T ss_pred             cEEEEEEEEE-EEEEE--CCC------e-EEEECCCCEEEECCCCeEEEEECCce
Confidence            8999999999 77765  232      3 47899999999999999999998654

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=97.71  E-value=0.00019  Score=60.70  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=58.0

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC---CCCEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG---PEGIECF  268 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g---~~~~~~~  268 (325)
                      +..+.++++.||+...+|.|+. .|..||++|+.+..   .++     ..+++||.++.|.|..|...+.   +++++++
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~~---e~~-----~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~  111 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRYK---EHD-----WVAHAGSVVYETASTRHTPQSAYAEGPDIITF  111 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEET---TSS-----CCBCTTCEEEECSSEEECEEESSSSSSCEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEEe---CCC-----eEECCCeEEEECCCCcceeEeCCCCCCCEEEE
Confidence            4678899999999999999986 78899999998752   222     2588999999999999986654   5788766


Q ss_pred             EEeC
Q 020545          269 SITT  272 (325)
Q Consensus       269 ~~~~  272 (325)
                      .+.+
T Consensus       112 ~~~~  115 (159)
T 3ebr_A          112 NIVA  115 (159)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6543

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.68  E-value=0.00019  Score=59.14  Aligned_cols=63  Identities=13%  Similarity=0.078  Sum_probs=49.4

Q ss_pred             cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCC-C-ceEEeEEecCccEEEECCccEEEEEcCCC
Q 020545          201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN-A-KLVLDSEVEAGQLLVVPRCFVVAIIAGPE  263 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~-g-~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~  263 (325)
                      ...++...|-|.+++|+.+|++|+.++.+-+.. + ..--.-.|++|++++||+|..|.-.+..+
T Consensus        37 ~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e  101 (140)
T 3d0j_A           37 DIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKD  101 (140)
T ss_dssp             BTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTT
T ss_pred             CcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCc
Confidence            345778889999999999999999999999631 1 01112369999999999999999777443

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.63  E-value=0.00022  Score=61.19  Aligned_cols=78  Identities=17%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             ceEEEEEecCCCccCCeecCC------CCEEEEEEeCcEEEEEEeCCCceE-----------------EeEEecCccEEE
Q 020545          193 LSCTILKLDANAMLSPTYTAD------SVQVFYVVKGSGKAQIVGLNAKLV-----------------LDSEVEAGQLLV  249 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~------A~ei~yV~~G~~~~~vv~p~g~~~-----------------~~~~l~~Gdv~v  249 (325)
                      -....+.|.||.+...|+|+.      -.|=.+|+.|++++.+  .+....                 -.-.|++||.+.
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvt  130 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYT  130 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEE
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCceeeecCCcEEEECCCCEEE
Confidence            467889999999999999999      8898999999977765  332110                 012699999999


Q ss_pred             ECCccEEEEEcCCCCEEEEEEeC
Q 020545          250 VPRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       250 vP~G~~h~~~~g~~~~~~~~~~~  272 (325)
                      ||.|..|+..|+.+++.+..+-+
T Consensus       131 Ippg~~H~f~ageegvli~EvSt  153 (175)
T 2y0o_A          131 IPPNTKHWFQAGEEGAVVTEMSS  153 (175)
T ss_dssp             ECTTCCEEEEEEEEEEEEEEEEE
T ss_pred             ECCCCcEEEEeCCCCEEEEEEeC
Confidence            99999999989777766555543

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.61  E-value=0.0039  Score=55.46  Aligned_cols=159  Identities=12%  Similarity=0.035  Sum_probs=103.1

Q ss_pred             ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCC
Q 020545            6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSR   85 (325)
Q Consensus         6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~   85 (325)
                      .+.+.+-+|.+...|..||++|+ -.    + +      .   ..+.+||.+..|+|+.|....  ++.+.++...  . 
T Consensus        51 ~pG~~~p~H~H~g~Ee~~VL~G~-f~----d-~------~---~~~~~Gd~~~~P~g~~H~p~a--~~gc~~~vk~--~-  110 (223)
T 3o14_A           51 APGSRFSAHTHDGGEEFIVLDGV-FQ----D-E------H---GDYPAGTYVRNPPTTSHVPGS--AEGCTIFVKL--W-  110 (223)
T ss_dssp             CTTEECCCEECTTCEEEEEEEEE-EE----E-T------T---EEEETTEEEEECTTCEECCEE--SSCEEEEEEE--S-
T ss_pred             CCCCCcccccCCCCEEEEEEEeE-EE----E-C------C---eEECCCeEEEeCCCCccccEe--CCCCEEEEEe--c-
Confidence            35566777877789999999999 32    2 2      1   468999999999999998775  4455444322  0 


Q ss_pred             CCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCC
Q 020545           86 AYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANF  165 (325)
Q Consensus        86 ~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~  165 (325)
                                          +|+++                   .. ..+ ....    .   .+.              
T Consensus       111 --------------------~~~~~-------------------d~-~~v-~~~~----~---~W~--------------  128 (223)
T 3o14_A          111 --------------------QFDPA-------------------DR-TQF-SKNM----E---AEL--------------  128 (223)
T ss_dssp             --------------------CSCTT-------------------CC-BCE-EEET----T---TTC--------------
T ss_pred             --------------------CCCCC-------------------cc-ccc-ccch----h---ccc--------------
Confidence                                22100                   00 001 1111    0   000              


Q ss_pred             CCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCc
Q 020545          166 PADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAG  245 (325)
Q Consensus       166 ~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~G  245 (325)
                       +..  ..|-.+..+....       +-.+..+++.||..+.+|.| ...|+ +|++|+..    +.+      .++.+|
T Consensus       129 -~~~--~~Gv~~~~L~~~~-------~E~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~----d~~------~~~~~G  186 (223)
T 3o14_A          129 -GAP--VEGISTSLLHEDE-------RETVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVT----VND------EVLGRN  186 (223)
T ss_dssp             -CCC--BTTEEEEEEEECS-------SCEEEEEEECTTCEEEECCS-SCEEE-EEEEEEEE----ETT------EEECTT
T ss_pred             -ccC--CCCeEEEEEecCC-------CcEEEEEEECCCCccCCCCC-CcEEE-EEEEeEEE----ECC------ceECCC
Confidence             100  1234444444332       23577899999999999999 88897 99999954    332      248899


Q ss_pred             cEEEECCccEEEEEcCCCCEEEE
Q 020545          246 QLLVVPRCFVVAIIAGPEGIECF  268 (325)
Q Consensus       246 dv~vvP~G~~h~~~~g~~~~~~~  268 (325)
                      +-+-.|.|..|...+|++++.++
T Consensus       187 sWlR~P~gs~h~~~ag~~g~~i~  209 (223)
T 3o14_A          187 AWLRLPEGEALSATAGARGAKIW  209 (223)
T ss_dssp             EEEEECTTCCEEEEEEEEEEEEE
T ss_pred             eEEEeCCCCccCcEECCCCeEEE
Confidence            99999999999988888886533

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.61  E-value=0.0002  Score=67.38  Aligned_cols=76  Identities=18%  Similarity=0.322  Sum_probs=57.0

Q ss_pred             ccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeC-C---cEEEeCCCCeEEEEecCCCCEEEEEEeecCCC
Q 020545           12 CLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRK-G---DVIPVPLGSASWWYNNGSSDVVIVFVGETSRA   86 (325)
Q Consensus        12 ~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~-G---Dv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~   86 (325)
                      --| |.+..|+++|++|+ +.+.+=++..     .+ ...++. |   |+++||+|..|-+.|.|+++++++.+.+  ..
T Consensus       286 g~h~h~~~~e~~~~~~G~-~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~~~~--~~  356 (369)
T 3st7_A          286 GNHWHHTKNEKFLVVSGK-GVIRFRHVND-----DE-IIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVN--EM  356 (369)
T ss_dssp             EEEECSSCCEEEEEEESE-EEEEEEETTC-----CC-CEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEEES--SC
T ss_pred             ccccccCcceEEEEEeee-EEEEEEcCCC-----Cc-EEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEEecC--cc
Confidence            334 55678999999999 9998876653     33 455666 7   9999999999999999999998888764  33


Q ss_pred             CCCCcceeee
Q 020545           87 YVPGEFSYFL   96 (325)
Q Consensus        87 ~~p~~~~~f~   96 (325)
                      .+|.+..+|+
T Consensus       357 y~~~~~d~~~  366 (369)
T 3st7_A          357 FDPNQPDTYF  366 (369)
T ss_dssp             CCSSSCCCEE
T ss_pred             cCCCCCcccc
Confidence            3444433443

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.56  E-value=0.00038  Score=59.40  Aligned_cols=59  Identities=10%  Similarity=0.119  Sum_probs=46.4

Q ss_pred             cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545          201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      .|++-.-=|.| ...|+.||++|+.++.+.+.+.  .-+-.|++||+|++|+|.+|.-.+-.
T Consensus        43 Gpn~r~d~H~h-~~dE~FyvlkG~m~i~v~d~g~--~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           43 GPNHRTDYHDD-PLEEFFYQLRGNAYLNLWVDGR--RERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             SCBCCCCEEEC-SSCEEEEEEESCEEEEEEETTE--EEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             CCCcCccCcCC-CCceEEEEEeeEEEEEEEcCCc--eeeEEECCCCEEEeCCCCCcCccccC
Confidence            45555666765 6899999999999999998532  22347999999999999999976643

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.54  E-value=0.00035  Score=59.58  Aligned_cols=54  Identities=13%  Similarity=-0.082  Sum_probs=43.0

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN   70 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~   70 (325)
                      ||...+|++|+++|+ ..+.+.+.+...  .+.+...+++||+|++|+|++|+=+-.
T Consensus        50 H~~~~eE~Fy~lkG~-m~l~v~d~g~~~--~~~~dv~i~eGdmfllP~gvpHsP~r~  103 (176)
T 1zvf_A           50 HINPTPEWFYQKKGS-MLLKVVDETDAE--PKFIDIIINEGDSYLLPGNVPHSPVRF  103 (176)
T ss_dssp             EECSSCEEEEEEESC-EEEEEEECSSSS--CEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             cCCCCceEEEEEeCE-EEEEEEcCCCcc--cceeeEEECCCCEEEcCCCCCcCCccc
Confidence            567789999999999 999998743100  023467999999999999999998775

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.43  E-value=0.0008  Score=57.35  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=42.8

Q ss_pred             eec-CCCCEEEEEEeCcEEEEEEeCC--CceEEeEEecCccEEEECCccEEEEEcCCCC
Q 020545          209 TYT-ADSVQVFYVVKGSGKAQIVGLN--AKLVLDSEVEAGQLLVVPRCFVVAIIAGPEG  264 (325)
Q Consensus       209 h~h-~~A~ei~yV~~G~~~~~vv~p~--g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~  264 (325)
                      .|| -...|+.|+++|+..+.+.+.+  +.+.-+-.+++||+|++|+|.+|.-.+-.+.
T Consensus        48 D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e~  106 (176)
T 1zvf_A           48 DYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADT  106 (176)
T ss_dssp             CEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTC
T ss_pred             cCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccCCc
Confidence            344 3488999999999999999843  1123345799999999999999997664433

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.38  E-value=0.00059  Score=56.18  Aligned_cols=65  Identities=12%  Similarity=0.067  Sum_probs=47.5

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      +.+|.+.+|+++|++|+ .++-+-+...  .........+++|++++||+|+-|.-....  +.+++.+=
T Consensus        44 ~h~H~~tDE~Fivl~G~-l~i~~rd~~~--~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~--e~~vLLiE  108 (140)
T 3d0j_A           44 LEIHHSTDEQFILSAGK-AILITAEKEN--DKFNIELTLMEKGKVYNVPAECWFYSITQK--DTKMMYVQ  108 (140)
T ss_dssp             EEEESSCCEEEEEEESC-EEEEEEEEET--TEEEEEEEECCTTCCEEECTTCEEEEEECT--TCEEEEEE
T ss_pred             hccCCCCCeEEEEEecE-EEEEEecCcC--CCCccceEEecCCCEEEeCCCccCcccCCC--ceEEEEEE
Confidence            45588999999999999 9888864210  001123568999999999999999887753  45665554

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.35  E-value=0.00072  Score=57.52  Aligned_cols=73  Identities=15%  Similarity=0.133  Sum_probs=56.6

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC--C-CEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP--E-GIECF  268 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~--~-~~~~~  268 (325)
                      +..+.++++.||+...+|+|+ ..+.+||++|+.+.+   ..+.    ..+++||.++.|.|..|...+..  + +++++
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~-g~ee~~VL~G~f~~~---~~~~----~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l  113 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHT-GTVHMYTISGCWYYT---EYPG----QKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVI  113 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEES-SCEEEEEEESEEEET---TCTT----SCEETTEEEEECTTCEECEECCTTCSSCEEEE
T ss_pred             CcEEEEEEECCCCcCCcccCC-CCEEEEEEEEEEEEC---CCce----EEECCCeEEEeCCCCceeeEeCCCCCCCcEEE
Confidence            456889999999999999997 579999999998863   1111    24789999999999999976632  3 77655


Q ss_pred             EEeC
Q 020545          269 SITT  272 (325)
Q Consensus       269 ~~~~  272 (325)
                      .+.+
T Consensus       114 ~v~~  117 (165)
T 3cjx_A          114 FMLS  117 (165)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5443

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.31  E-value=0.0012  Score=59.38  Aligned_cols=72  Identities=22%  Similarity=0.350  Sum_probs=53.0

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      ++++..+.+ .|....-.+  ..+|+.||++|+.+++.   +|+ .+  ++++||+++||+|..+...+...-..++...
T Consensus        46 ~~~~G~~~~-~g~~~v~~~--p~dE~~~VleG~~~lt~---~g~-~~--~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~  116 (238)
T 3myx_A           46 GIAAGIVEF-GTALSVEAY--PYTEMLVMHRGSVTLTS---GTD-SV--TLSTGESAVIGRGTQVRIDAQPESLWAFCAS  116 (238)
T ss_dssp             SEEEEEEEE-CSEEEESSC--SSEEEEEEEESEEEEEE---TTE-EE--EEETTCEEEECTTCCEEEEECTTEEEEEEEE
T ss_pred             CeEEEEEEe-ccccccccC--CCcEEEEEEEeEEEEEC---CCe-EE--EEcCCCEEEECCCCEEEEEecCCeEEEEEec
Confidence            578888888 766666555  36899999999999987   343 33  4999999999999998765544433344445


Q ss_pred             C
Q 020545          272 T  272 (325)
Q Consensus       272 ~  272 (325)
                      .
T Consensus       117 ~  117 (238)
T 3myx_A          117 T  117 (238)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.21  E-value=0.0011  Score=60.54  Aligned_cols=215  Identities=9%  Similarity=0.056  Sum_probs=110.7

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcce
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFS   93 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~   93 (325)
                      ||.+.+|++|+++|. .++.+++.+      +.+.-.|++||+|++|+|++|.=+-..  +.+.+.+ .......--+--
T Consensus        47 H~~~~dE~FyqlkG~-m~l~~~d~g------~~~~V~i~eGemfllP~gv~HsP~r~~--et~gLvi-E~~R~~~~~D~l  116 (286)
T 2qnk_A           47 HIEEGEEVFYQLEGD-MVLRVLEQG------KHRDVVIRQGEIFLLPARVPHSPQRFA--NTVGLVV-ERRRLETELDGL  116 (286)
T ss_dssp             EECSSCEEEEEEESC-EEEEEEETT------EEEEEEECTTEEEEECTTCCEEEEECT--TCEEEEE-EECCCTTCCEEE
T ss_pred             cCCCCCeEEEEEeCe-EEEEEEeCC------ceeeEEECCCeEEEeCCCCCcCCcccC--CeEEEEE-eecCCCCCccce
Confidence            677789999999999 999999754      344678999999999999999877743  3333333 221211111112


Q ss_pred             eeeeccccccccCCChhHHhhhcCCCH------HHHHHHhcccCceeEEEecCCcCCCCc--ccCCCCC-CCceeeeecC
Q 020545           94 YFLLTGAQGILGGFSSEFTGRAYNMNE------NEAKILAKSQTGVLIIKLGQDESEKIP--LPHQHGN-ANLMVNNFAN  164 (325)
Q Consensus        94 ~f~laG~~s~l~~f~~~vLa~af~v~~------~~~~~l~~~q~~~~Iv~~~~~~~~~~~--~~~p~~~-~~~~~~nl~~  164 (325)
                      ..|..+-..+       +-++.|-+..      ..+++..++...+   ..++.+ ..+.  .+.+... .-..+|+|.+
T Consensus       117 ~wyc~~c~~~-------~~e~~f~~~dl~~ql~~~~~~f~~~~~~r---tc~p~~-~~~~~~~p~~~~~~~~~~pf~Lk~  185 (286)
T 2qnk_A          117 RYYVGDTMDV-------LFEKWFYCKDLGTQLAPIIQEFFSSEQYR---TGKPIP-DQLLKEPPFPLSTRSIMEPMSLDA  185 (286)
T ss_dssp             EEESTTSSSE-------EEEEEECCSSHHHHHHHHHHHHHTSHHHH---HSCCCG-GGSCSSCSSCCCCCCCCCCEEHHH
T ss_pred             EEEcCCCCCE-------EEEEEEEEechHHhhHHHHHHHhcCcccc---cCCCCh-hhcccCCCCCCccccccCCcCHHH
Confidence            3344332221       1222333211      1122222222110   111100 0110  0111111 2234677743


Q ss_pred             ----CCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeE
Q 020545          165 ----FPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDS  240 (325)
Q Consensus       165 ----~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~  240 (325)
                          +++++.  .+|.+... ..++   ++     ..+-+.+|.--..-  .....|.|+++|+..|++   ++ +.+  
T Consensus       186 Wl~~h~~ei~--s~~~~sLF-g~~~---et-----eV~l~G~Ges~~~~--~~~d~wiWqLEGss~Vt~---~~-q~~--  246 (286)
T 2qnk_A          186 WLDSHHRELQ--AGTPLSLF-GDTY---ET-----QVIAYGQGSSEGLR--QNVDVWLWQLEGSSVVTM---GG-RRL--  246 (286)
T ss_dssp             HHHHTHHHHH--TTCCEESS-CTTS---SE-----EEEEECSEEEEECC--CSSCEEEEEEESCEEEEE---TT-EEE--
T ss_pred             HHHhhhHHHh--cCCccccc-cCCC---ce-----EEEEEcCCcccccc--CcCcEEEEEEcCceEEEE---CC-eEE--
Confidence                445543  23333322 2222   11     11114444322211  234899999999997554   33 333  


Q ss_pred             EecCccEEEECCccEEEEEcCCCCEEEEE
Q 020545          241 EVEAGQLLVVPRCFVVAIIAGPEGIECFS  269 (325)
Q Consensus       241 ~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~  269 (325)
                      .|++||.+.||++..|....+.. .+++.
T Consensus       247 ~L~~~DsLLIpa~~~y~~~r~~g-sv~L~  274 (286)
T 2qnk_A          247 SLAPDDSLLVLAGTSYAWERTQG-SVALS  274 (286)
T ss_dssp             EECTTEEEEECTTCCEEEEECTT-CEEEE
T ss_pred             eccCCCEEEecCCCeEEEEecCC-eEEEE
Confidence            69999999999999987655443 34443

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.19  E-value=0.0011  Score=60.47  Aligned_cols=48  Identities=15%  Similarity=0.307  Sum_probs=40.3

Q ss_pred             cCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          211 TADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       211 h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      |....|+.|+++|..++.+.+.+.-+  +-.+++||+|++|+|.+|.=.+
T Consensus        48 ~~~~dE~FyqlkG~m~l~~~d~g~~~--~V~i~eGemfllP~gv~HsP~r   95 (286)
T 2qnk_A           48 IEEGEEVFYQLEGDMVLRVLEQGKHR--DVVIRQGEIFLLPARVPHSPQR   95 (286)
T ss_dssp             ECSSCEEEEEEESCEEEEEEETTEEE--EEEECTTEEEEECTTCCEEEEE
T ss_pred             CCCCCeEEEEEeCeEEEEEEeCCcee--eEEECCCeEEEeCCCCCcCCcc
Confidence            56689999999999999999853222  3479999999999999999655

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=97.14  E-value=0.0064  Score=51.90  Aligned_cols=82  Identities=12%  Similarity=0.148  Sum_probs=65.9

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce---EEeEEecCccEEEECCccEEEEEc-CCCCEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL---VLDSEVEAGQLLVVPRCFVVAIIA-GPEGIEC  267 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~---~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~  267 (325)
                      ++.+..+...||.-..+|=|.++..+++|++|+.+.++....+.+   .-...+.+||+++.|.+.+|...| +++.++-
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aVS  147 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMVS  147 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEEE
Confidence            457888999999999999999999999999999999987643321   123568999999999999999665 6777776


Q ss_pred             EEEeCC
Q 020545          268 FSITTS  273 (325)
Q Consensus       268 ~~~~~s  273 (325)
                      +-+..-
T Consensus       148 lHvY~p  153 (171)
T 3eqe_A          148 LHVYSP  153 (171)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            666543

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.13  E-value=0.0092  Score=49.32  Aligned_cols=96  Identities=11%  Similarity=0.065  Sum_probs=67.9

Q ss_pred             CCeEEEEEcC-CCCcccccccceEEEEE-ecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecC-ccEEE
Q 020545          173 KAGMVTSFTG-SNFPFLEQVGLSCTILK-LDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEA-GQLLV  249 (325)
Q Consensus       173 ~gG~~~~~~~-~~~p~L~~~gis~~~v~-l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~-Gdv~v  249 (325)
                      ..|.++.+.. .+.|. . .. .+..+. ..||..+.+|.|...+++.+|++|+..+.+-+....+.  ..|.+ -..+.
T Consensus        16 ~RG~L~~~e~~~~ipf-~-ik-Rvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~--~~L~~~~~gL~   90 (141)
T 2pa7_A           16 SRGSLVAIEENKNIPF-S-IK-RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQE--ITLDSPAVGLY   90 (141)
T ss_dssp             TTEEEEEEETTTTSSS-C-CC-EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEE--EEECCTTEEEE
T ss_pred             CCCcEEEEeccCCCCC-C-cc-EEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEE--EEECCCCcEEE
Confidence            4599999887 44443 1 11 233333 44899999999999999999999999999954332222  24543 34699


Q ss_pred             ECCccEEEEEcCCCCEEEEEEeCC
Q 020545          250 VPRCFVVAIIAGPEGIECFSITTS  273 (325)
Q Consensus       250 vP~G~~h~~~~g~~~~~~~~~~~s  273 (325)
                      ||.|..|...+-+++++++.+-+.
T Consensus        91 IppgvWh~~~~~s~~avllvlas~  114 (141)
T 2pa7_A           91 VGPAVWHEMHDFSSDCVMMVLASD  114 (141)
T ss_dssp             ECTTCEEEEECCCTTCEEEEEESS
T ss_pred             eCCCEEEEEEEcCCCeEEEEECCC
Confidence            999999998886666777776544

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.12  E-value=0.0079  Score=51.50  Aligned_cols=74  Identities=15%  Similarity=0.046  Sum_probs=58.4

Q ss_pred             EecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc-----eEEeEEec---CccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          199 KLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVE---AGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       199 ~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~---~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      ...+|.++-.|||..-.++++|++|+...-++|-...     +.....|.   ....++||+|++|-..+ ++++++++.
T Consensus        59 ~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly  138 (174)
T 3ejk_A           59 EVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVAN  138 (174)
T ss_dssp             EECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEE
T ss_pred             ECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEE
Confidence            3478999999999999999999999999999985421     23445676   67899999999998777 444677665


Q ss_pred             EeC
Q 020545          270 ITT  272 (325)
Q Consensus       270 ~~~  272 (325)
                      ..+
T Consensus       139 ~~s  141 (174)
T 3ejk_A          139 CTD  141 (174)
T ss_dssp             EES
T ss_pred             ECC
Confidence            544

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.03  E-value=0.002  Score=57.41  Aligned_cols=69  Identities=16%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      +..+.++++.||+...+|.|+ ..|.+||++|+..    +..      ..+.+||.+..|.|..|.-.+ ++++.++...
T Consensus        42 g~~~~lvr~~pG~~~p~H~H~-g~Ee~~VL~G~f~----d~~------~~~~~Gd~~~~P~g~~H~p~a-~~gc~~~vk~  109 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTHD-GGEEFIVLDGVFQ----DEH------GDYPAGTYVRNPPTTSHVPGS-AEGCTIFVKL  109 (223)
T ss_dssp             CEEEEEEEECTTEECCCEECT-TCEEEEEEEEEEE----ETT------EEEETTEEEEECTTCEECCEE-SSCEEEEEEE
T ss_pred             ccEEEEEEECCCCCcccccCC-CCEEEEEEEeEEE----ECC------eEECCCeEEEeCCCCccccEe-CCCCEEEEEe
Confidence            446788999999999999997 6799999999964    332      258899999999999998666 6777776655


Q ss_pred             C
Q 020545          272 T  272 (325)
Q Consensus       272 ~  272 (325)
                      .
T Consensus       110 ~  110 (223)
T 3o14_A          110 W  110 (223)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.02  E-value=0.0019  Score=51.68  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             ceEEEEEecCCCccCCeecCCCC-EEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE-EEEE
Q 020545          193 LSCTILKLDANAMLSPTYTADSV-QVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV-VAII  259 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~-ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~-h~~~  259 (325)
                      ..+..=..+||...   |+...+ |++||++|+++++.  .+|..   .++++||++++|+|+. .|..
T Consensus        42 ~~~GvWe~tPG~~~---~~~~~~~E~~~iLeG~~~lt~--ddG~~---~~l~aGD~~~~P~G~~gtWev  102 (116)
T 3es4_A           42 TIVAVWMAEPGIYN---YAGRDLEETFVVVEGEALYSQ--ADADP---VKIGPGSIVSIAKGVPSRLEI  102 (116)
T ss_dssp             CEEEEEEECSEEEE---ECCCSEEEEEEEEECCEEEEE--TTCCC---EEECTTEEEEECTTCCEEEEE
T ss_pred             EEEEEEecCCceeE---CeeCCCcEEEEEEEeEEEEEe--CCCeE---EEECCCCEEEECCCCeEEEEE
Confidence            34445588999875   444455 99999999999985  34543   2599999999999997 4544

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=96.98  E-value=0.0032  Score=52.81  Aligned_cols=88  Identities=11%  Similarity=0.035  Sum_probs=62.3

Q ss_pred             CCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545          173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR  252 (325)
Q Consensus       173 ~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~  252 (325)
                      .|-+++.+...  |   ..|-...++++.||+.+.+|||+ ..|-+||++|+...+    .|...-+..+++|+.++-|+
T Consensus        31 ~Gv~~k~L~~~--~---e~g~~t~lvr~~pG~~~p~H~H~-g~ee~~VL~G~~~~~----~Gd~~~~~~~~aGsYv~ePp  100 (153)
T 3bal_A           31 GGITWQLLHSS--P---ETSSWTAIFNCPAGSSFASHIHA-GPGEYFLTKGKMEVR----GGEQEGGSTAYAPSYGFESS  100 (153)
T ss_dssp             SCCEEEEEEEE--T---TTTEEEEEEEECTTEEECCEEES-SCEEEEEEESEEEET----TCGGGTSEEEESSEEEEECT
T ss_pred             CCeEEEEEEEC--C---ccceEEEEEEeCCCCCccCccCC-CCEEEEEEEEEEEec----CccccCccccCCCeEEEcCC
Confidence            35566666222  3   23678999999999999999998 667899999998664    33211134578999999999


Q ss_pred             ccEEEEEcCCCCEEEEEE
Q 020545          253 CFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       253 G~~h~~~~g~~~~~~~~~  270 (325)
                      |..|+....+++.+++.+
T Consensus       101 Gs~H~p~~~~~~~~~~~~  118 (153)
T 3bal_A          101 GALHGKTFFPVESQFYMT  118 (153)
T ss_dssp             TCEESCCEESSCEEEEEE
T ss_pred             CCcccceeCCCCeEEEEE
Confidence            999985554555444433

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=96.96  E-value=0.0023  Score=51.25  Aligned_cols=43  Identities=9%  Similarity=0.170  Sum_probs=34.8

Q ss_pred             CeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545           19 HVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG   71 (325)
Q Consensus        19 ~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g   71 (325)
                      +|++||++|+ +++..  .++      + ..++++||+++||+|..--|.-..
T Consensus        62 ~E~~~iLeG~-~~lt~--ddG------~-~~~l~aGD~~~~P~G~~gtWev~e  104 (116)
T 3es4_A           62 EETFVVVEGE-ALYSQ--ADA------D-PVKIGPGSIVSIAKGVPSRLEILS  104 (116)
T ss_dssp             EEEEEEEECC-EEEEE--TTC------C-CEEECTTEEEEECTTCCEEEEECS
T ss_pred             cEEEEEEEeE-EEEEe--CCC------e-EEEECCCCEEEECCCCeEEEEEeE
Confidence            4999999999 88776  232      3 478999999999999998886543

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=96.95  E-value=0.0052  Score=50.33  Aligned_cols=55  Identities=13%  Similarity=0.131  Sum_probs=42.0

Q ss_pred             CCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC--CCEEEE
Q 020545          207 SPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP--EGIECF  268 (325)
Q Consensus       207 ~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~--~~~~~~  268 (325)
                      .||.| +..++.||++|++.+.+   ++ +.+  .+++||+++||+|.+|...+.+  ++.+.+
T Consensus        32 ~p~~h-~~~~i~~v~~G~~~~~i---~~-~~~--~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~   88 (164)
T 2arc_A           32 RPLGM-KGYILNLTIRGQGVVKN---QG-REF--VCRPGDILLFPPGEIHHYGRHPEAREWYHQ   88 (164)
T ss_dssp             ETTCC-SSEEEEEEEEECEEEEE---TT-EEE--EECTTCEEEECTTCCEEEEECTTSSEEEEE
T ss_pred             cccCC-CceEEEEEEEeEEEEEE---CC-EEE--EecCCeEEEEcCCCCEEEEeCCCCCcEEEE
Confidence            48886 57799999999999987   33 333  6999999999999999865532  445433

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=96.80  E-value=0.018  Score=50.61  Aligned_cols=80  Identities=10%  Similarity=-0.003  Sum_probs=63.2

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEe--CCCceE---EeEEecCccEEEECC--ccEEEEE-c-CC
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG--LNAKLV---LDSEVEAGQLLVVPR--CFVVAII-A-GP  262 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~--p~g~~~---~~~~l~~Gdv~vvP~--G~~h~~~-~-g~  262 (325)
                      .+.+..+...||.-..+|-|.. ..+++|++|+.+.++..  .+|...   -...+.+||+.+++.  |.+|-.. + ++
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~  156 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  156 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCC
Confidence            3578889999999999999997 99999999999999876  333211   135799999999999  9999855 4 46


Q ss_pred             CCEEEEEEeC
Q 020545          263 EGIECFSITT  272 (325)
Q Consensus       263 ~~~~~~~~~~  272 (325)
                      +.++.|-++.
T Consensus       157 ~~avsLHvY~  166 (208)
T 2gm6_A          157 RVSISIHVYG  166 (208)
T ss_dssp             SCEEEEEEES
T ss_pred             CcEEEEEEEc
Confidence            6777665553

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=96.73  E-value=0.0056  Score=52.12  Aligned_cols=94  Identities=19%  Similarity=0.116  Sum_probs=63.2

Q ss_pred             ccccCCCCeEEEEEeCCeE-EEEEEcCCCCCCCcceEEE----EeeCCcE--EEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545           12 CLTENDLHVIPIIIPCELG-VAGMVLPNDQKHSQEEIVL----GLRKGDV--IPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g-~~~~v~~~~~~~~~~~~~~----~l~~GDv--~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      ..|-.+++|+.|...|. + .+.++.+++     .....    ++.+|++  ++||+|.-+...+.+.+-+.+-|+.   
T Consensus        63 ~~HRv~sdEiW~~~~G~-pL~l~l~~~dg-----~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g~~~LV~C~V---  133 (170)
T 1yud_A           63 HFHRLTADEMWYFHAGQ-SLTIYMISPEG-----ELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMV---  133 (170)
T ss_dssp             EEEECSSCEEEEEEEES-CEEEEEECTTS-----CEEEEEESSCTTTTEESCEEECTTCEEEEEESSSSEEEEEEEE---
T ss_pred             eeEEcCCCEEEEEEcCC-CEEEEEEcCCC-----CEEEEEeCCCcccCceeEEEECCCCEEEEEECCCCcEEEEEEE---
Confidence            34555799999999999 7 888998886     22222    3788999  9999999999999833555555655   


Q ss_pred             CCCCCCc-ceeeeeccccccccCCChhHHhhhcCCCHHHHHHH
Q 020545           85 RAYVPGE-FSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKIL  126 (325)
Q Consensus        85 ~~~~p~~-~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l  126 (325)
                         .||. |..|-|+         +.+-|.+-|---++.+++|
T Consensus       134 ---aPGF~f~dfel~---------~~~~L~~~~P~~~~~I~~l  164 (170)
T 1yud_A          134 ---SPGFTFDDFELF---------SQEALLAMYPQHKAVVQKL  164 (170)
T ss_dssp             ---SSCCCGGGCCBC---------BHHHHHHSCCTTHHHHTTS
T ss_pred             ---CCCccCCceEEc---------CHHHHHhHCchhHHHHHHh
Confidence               3443 5555444         3455555554444445444

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=96.68  E-value=0.042  Score=46.72  Aligned_cols=132  Identities=14%  Similarity=0.158  Sum_probs=83.2

Q ss_pred             cCCeEEEEEcCCCCc-ccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcE-EEEEEeCCCce---EEeEEecCcc
Q 020545          172 KKAGMVTSFTGSNFP-FLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSG-KAQIVGLNAKL---VLDSEVEAGQ  246 (325)
Q Consensus       172 ~~gG~~~~~~~~~~p-~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~-~~~vv~p~g~~---~~~~~l~~Gd  246 (325)
                      ++||++++.....-+ .-.....++...-|.+|.....|-+ +|+|+-|...|.. .+.++.++|+.   ++-.++.+|+
T Consensus        27 PEGG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv-~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge  105 (170)
T 1yud_A           27 VEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGE  105 (170)
T ss_dssp             TTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTE
T ss_pred             CCCceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEc-CCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCc
Confidence            468888877654310 1122235777778999997655553 5999999999996 88999998752   2234588999


Q ss_pred             E--EEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhh
Q 020545          247 L--LVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFK  311 (325)
Q Consensus       247 v--~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~  311 (325)
                      +  ++||+|......+.+.+..+++..-+  |++.|-     =+.-.+++-|.+.|---++.+++|-
T Consensus       106 ~pQ~vVP~G~wqaa~~~~g~~~LV~C~Va--PGF~f~-----dfel~~~~~L~~~~P~~~~~I~~lt  165 (170)
T 1yud_A          106 RPQFLVPKGCIFGSAMNQDGFSLVGCMVS--PGFTFD-----DFELFSQEALLAMYPQHKAVVQKLS  165 (170)
T ss_dssp             ESCEEECTTCEEEEEESSSSEEEEEEEES--SCCCGG-----GCCBCBHHHHHHSCCTTHHHHTTSC
T ss_pred             eeEEEECCCCEEEEEECCCCcEEEEEEEC--CCccCC-----ceEEcCHHHHHhHCchhHHHHHHhh
Confidence            9  99999999875442114333333322  322110     0111356777777766677777764

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=96.56  E-value=0.0041  Score=52.42  Aligned_cols=62  Identities=8%  Similarity=-0.042  Sum_probs=47.8

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec--CCCCEEEEEEe
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN--GSSDVVIVFVG   81 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~--g~~~l~~~~~~   81 (325)
                      +.+.+-+|.+...|..||++|+ ...   + +.     .   ..+++||.++.|+|..|...+.  ++++++++.+.
T Consensus        51 pG~~~p~H~H~g~ee~~VL~G~-~~~---~-e~-----~---~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~~~~  114 (159)
T 3ebr_A           51 AGMEMPRHHHTGTVIVYTVQGS-WRY---K-EH-----D---WVAHAGSVVYETASTRHTPQSAYAEGPDIITFNIV  114 (159)
T ss_dssp             SSCBCCCEEESSCEEEEEEESC-EEE---T-TS-----S---CCBCTTCEEEECSSEEECEEESSSSSSCEEEEEEE
T ss_pred             CCCCcccccCCCCEEEEEEEeE-EEE---e-CC-----C---eEECCCeEEEECCCCcceeEeCCCCCCCEEEEEEe
Confidence            4556667766678999999999 442   2 21     1   3689999999999999999998  77888877755

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=96.35  E-value=0.013  Score=52.55  Aligned_cols=60  Identities=8%  Similarity=-0.038  Sum_probs=45.0

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec--CCCCEEEE
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN--GSSDVVIV   78 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~--g~~~l~~~   78 (325)
                      .+-+|+++.-++.||++|+ |.  .++..+     . ....+++||++++|+|.+|.+...  .+++...+
T Consensus        21 ~~~~~~~~~~~i~~v~~G~-~~--~i~~~~-----~-~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~~   82 (276)
T 3gbg_A           21 IFNNLYINDYKMFWIDSGI-AK--LIDKNC-----L-VSYEINSSSIILLKKNSIQRFSLTSLSDENINVS   82 (276)
T ss_dssp             EEEEEECSSCEEEEESSSC-EE--EEETTT-----T-EEEEECTTEEEEECTTCEEEEEEEECCSSCEEEE
T ss_pred             hccHhhhcceEEEEEecCc-eE--EECCcc-----c-eeEEEcCCCEEEEcCCCceeeccccCCCcceEEE
Confidence            4567888999999999999 99  444321     1 147899999999999999988765  33444433

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=96.26  E-value=0.018  Score=49.01  Aligned_cols=66  Identities=9%  Similarity=0.039  Sum_probs=49.1

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      |.++..+++|++|+ .....-...+.. ........+++||++++|+|.+|.+.|.++++++-+-+..
T Consensus        87 H~~s~~~~~VL~G~-l~e~~y~~~~~~-~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aVSlHvY~  152 (171)
T 3eqe_A           87 HGQSIGCAMVLEGK-LLNSIYRSTGEH-AELSNSYFVHEGECLISTKGLIHKMSNPTSERMVSLHVYS  152 (171)
T ss_dssp             CTTCEEEEEEEESE-EEEEEEEECSSS-EEEEEEEEEETTCEEEECTTCEEEEECCSSSCEEEEEEEE
T ss_pred             CCCceEEEEEEeee-EEEEEeecCCCc-eeecceEEeCCCcEEEeCCCCEEEEECCCCCCEEEEEEeC
Confidence            55678999999999 776654322100 0011356899999999999999999999998888887764

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=96.22  E-value=0.0014  Score=54.27  Aligned_cols=66  Identities=0%  Similarity=-0.448  Sum_probs=45.6

Q ss_pred             ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEE-EEecCCCCEEEEEEee
Q 020545            6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASW-WYNNGSSDVVIVFVGE   82 (325)
Q Consensus         6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~-~~N~g~~~l~~~~~~~   82 (325)
                      .+.+.+-+|.+...|.+||++|+ ....   .+.     ...-..+++||.+++|+|..|. ..+.  ++.+++++++
T Consensus        52 ~pG~~~p~H~H~~~ee~~VL~G~-~~~~---~g~-----~~~~~~~~~Gd~~~~p~g~~H~p~~~~--e~~~~l~~~~  118 (145)
T 2o1q_A           52 PAGSSFAAHVHVGPGEYFLTKGK-MDVR---GGK-----AAGGDTAIAPGYGYESANARHDKTEFP--VASEFYMSFL  118 (145)
T ss_dssp             CTTEEECCEEESSCEEEEEEEEE-EEET---TCG-----GGTSEEEESSEEEEECTTCEESCCEEE--EEEEEEEEEE
T ss_pred             CCCCCCCccCCCCCEEEEEEEeE-EEEc---CCC-----EecceEeCCCEEEEECcCCccCCeECC--CCeEEEEEEC
Confidence            35667777866678889999999 6532   121     1102679999999999999998 4433  4466666664

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=96.19  E-value=0.015  Score=49.81  Aligned_cols=61  Identities=10%  Similarity=0.084  Sum_probs=40.9

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCCC--------------CcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQKH--------------SQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~~--------------~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      -.|=.+|+.|+ ..+.+  .+....              ... ....|++||.+.||+|+.||++| +.+.+ ++.-+.+
T Consensus        80 K~E~~ivr~G~-v~l~~--~g~~~~~~~v~v~dg~~~~~~a~-~~i~L~pGesvtIppg~~H~f~a-geegv-li~EvSt  153 (175)
T 2y0o_A           80 KQETFRCRYGK-VYLYV--EGEKTPLPKVLPPQEDREHYTVW-HEIELEPGGQYTIPPNTKHWFQA-GEEGA-VVTEMSS  153 (175)
T ss_dssp             CCEEEEEEEEE-EEEEE--SSSCCSSCSCCCCGGGGGGCCCC-EEEEECTTCEEEECTTCCEEEEE-EEEEE-EEEEEEE
T ss_pred             CceeEEEecCE-EEEEE--CCccccCcceeccCCceeeecCC-cEEEECCCCEEEECCCCcEEEEe-CCCCE-EEEEEeC
Confidence            67888899999 88866  231000              001 24689999999999999999999 33344 4444444


Q ss_pred             C
Q 020545           84 S   84 (325)
Q Consensus        84 ~   84 (325)
                      .
T Consensus       154 ~  154 (175)
T 2y0o_A          154 T  154 (175)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=95.91  E-value=0.035  Score=48.33  Aligned_cols=67  Identities=12%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             EEEEEecCCCccC-CeecCCCCEEEEEEeCcEEEEEEeCCCc---------------------------------eEEeE
Q 020545          195 CTILKLDANAMLS-PTYTADSVQVFYVVKGSGKAQIVGLNAK---------------------------------LVLDS  240 (325)
Q Consensus       195 ~~~v~l~pg~~~~-Ph~h~~A~ei~yV~~G~~~~~vv~p~g~---------------------------------~~~~~  240 (325)
                      ...+-|.++|-.. +|+.+ ..-+..++.|+=++.++.|...                                 +.++.
T Consensus       125 ~~~~wiG~~gs~t~~H~D~-~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~  203 (235)
T 4gjz_A          125 TINAWFGPQGTISPLHQDP-QQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSC  203 (235)
T ss_dssp             EEEEEEECTTCEEEEECCS-SEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEE
T ss_pred             ceEEEEeCCCCCceeeecc-ccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEE
Confidence            3445667765554 47755 4678889999999999987420                                 12456


Q ss_pred             EecCccEEEECCccEEEEEcCC
Q 020545          241 EVEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       241 ~l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      .|++||+++||+|+.|...+-+
T Consensus       204 ~l~pGD~LyiP~gW~H~V~~l~  225 (235)
T 4gjz_A          204 ILSPGEILFIPVKYWHYVRALD  225 (235)
T ss_dssp             EECTTCEEEECTTCEEEEEESS
T ss_pred             EECCCCEEEeCCCCcEEEEECC
Confidence            8999999999999999976644

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=95.87  E-value=0.077  Score=46.15  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             cCCCccCCeecCC---CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTAD---SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~~---A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++-.|||..   -.++++|++|+...-+||-.-.     +.....|.+  +..++||.|++|-..+-.++++++-.
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~a~~ly~  152 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  152 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEE
Confidence            4799999999965   5899999999998878885321     234456754  78999999999998886666665544


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       153 ~s  154 (196)
T 1wlt_A          153 TH  154 (196)
T ss_dssp             ES
T ss_pred             eC
Confidence            43

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=95.86  E-value=0.14  Score=44.60  Aligned_cols=81  Identities=11%  Similarity=0.040  Sum_probs=62.7

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeC--CCc----eEEeEEecCccEEEE-CCccEEEEEc-C-C
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL--NAK----LVLDSEVEAGQLLVV-PRCFVVAIIA-G-P  262 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p--~g~----~~~~~~l~~Gdv~vv-P~G~~h~~~~-g-~  262 (325)
                      ..++..+...||.-..+|=|.++..+++|++|+.+.+....  ++.    ..-...+++|||.++ |.+.+|...| + +
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~  148 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  148 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence            35778899999999999999999999999999999998762  221    122357999999999 8888998666 5 4


Q ss_pred             CCEEEEEEeC
Q 020545          263 EGIECFSITT  272 (325)
Q Consensus       263 ~~~~~~~~~~  272 (325)
                      +.++-+=++.
T Consensus       149 ~~avSlHvY~  158 (200)
T 3eln_A          149 EPAVSLHLYS  158 (200)
T ss_dssp             CCEEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            5655444443

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=95.76  E-value=0.037  Score=54.06  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             EEEEecCCCccC--CeecCCCCEEEEEEeCcEEEEEEeCCC---------------ceEEeEEecCccEEEECCccEEEE
Q 020545          196 TILKLDANAMLS--PTYTADSVQVFYVVKGSGKAQIVGLNA---------------KLVLDSEVEAGQLLVVPRCFVVAI  258 (325)
Q Consensus       196 ~~v~l~pg~~~~--Ph~h~~A~ei~yV~~G~~~~~vv~p~g---------------~~~~~~~l~~Gdv~vvP~G~~h~~  258 (325)
                      ..+-+.++|-..  |||. ..+-++..+.|+=++.+..|..               ...++..|++||+++||+|++|+.
T Consensus       141 ~n~y~~~~g~~g~~~H~D-~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~  219 (442)
T 2xdv_A          141 SNVYITPAGSQGLPPHYD-DVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQA  219 (442)
T ss_dssp             EEEEEECTTCBCSCSEEC-SSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEE
T ss_pred             cceEECCCCCCCccceEC-CcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEE
Confidence            445677777655  9994 4566777788999999988752               123467899999999999999997


Q ss_pred             EcCC
Q 020545          259 IAGP  262 (325)
Q Consensus       259 ~~g~  262 (325)
                      .+.+
T Consensus       220 ~s~~  223 (442)
T 2xdv_A          220 DTPA  223 (442)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            7643

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=95.76  E-value=0.11  Score=44.84  Aligned_cols=72  Identities=11%  Similarity=0.073  Sum_probs=55.0

Q ss_pred             cCCCccCCeec--CCCCEEEEEEeCcEEEEEEeCCC-c----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          201 DANAMLSPTYT--ADSVQVFYVVKGSGKAQIVGLNA-K----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       201 ~pg~~~~Ph~h--~~A~ei~yV~~G~~~~~vv~p~g-~----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+|-++-.|||  ..-.++++|++|++.--+++-.- +    +.....|.+  +..++||.|++|-..+-.++++++-..
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~  135 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKC  135 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEec
Confidence            37999999999  66789999999999888888642 1    334456654  689999999999988866656666554


Q ss_pred             C
Q 020545          272 T  272 (325)
Q Consensus       272 ~  272 (325)
                      +
T Consensus       136 s  136 (185)
T 1ep0_A          136 T  136 (185)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=95.73  E-value=0.11  Score=48.46  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=40.4

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG  261 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g  261 (325)
                      .++.++++..+.-.   -..+...|+.|++|++.+..   ++. .+  .|++||.++||++..-+...|
T Consensus       251 F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~---~~~-~~--~l~~G~~~~vpa~~~~~~i~g  310 (319)
T 1qwr_A          251 FSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKY---EDK-TC--PLKKGDHFILPAQMPDFTIKG  310 (319)
T ss_dssp             CEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEE---TTE-EE--EEETTCEEEECTTCCCEEEEE
T ss_pred             EEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEE---CCE-EE--EEcCCcEEEEeCCCceEEEEe
Confidence            45666666644221   22357899999999999865   333 23  699999999999875444433

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=95.69  E-value=0.03  Score=50.23  Aligned_cols=59  Identities=10%  Similarity=0.353  Sum_probs=42.8

Q ss_pred             EEEecCCC--ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc
Q 020545          197 ILKLDANA--MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA  260 (325)
Q Consensus       197 ~v~l~pg~--~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~  260 (325)
                      ...|....  ...+||| +..++.||.+|++.  .++..+...+  .+++||++++|+|.+|....
T Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~i~~v~~G~~~--~i~~~~~~~~--~l~~g~l~~i~p~~~h~~~~   71 (276)
T 3gbg_A           11 VYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAK--LIDKNCLVSY--EINSSSIILLKKNSIQRFSL   71 (276)
T ss_dssp             EEEECTTCEEEEEEEEC-SSCEEEEESSSCEE--EEETTTTEEE--EECTTEEEEECTTCEEEEEE
T ss_pred             hhhhhcccchhccHhhh-cceEEEEEecCceE--EECCccceeE--EEcCCCEEEEcCCCceeecc
Confidence            34444433  3467996 78899999999999  5554322133  59999999999999997543

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=95.68  E-value=0.026  Score=54.98  Aligned_cols=198  Identities=12%  Similarity=-0.025  Sum_probs=103.2

Q ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCC-CCCCCccee
Q 020545           16 NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSR-AYVPGEFSY   94 (325)
Q Consensus        16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~-~~~p~~~~~   94 (325)
                      .|.++++++.+|+ +.+..   +-     .  ...+++||+++||+|+.+.+.=.+  +.+.+.+=..+. ...|..   
T Consensus       176 aDGD~Livpq~G~-l~i~T---Ef-----G--~L~v~pgei~VIPRGi~frv~l~~--p~Rgyi~E~~g~~f~LP~l---  239 (471)
T 1eyb_A          176 SDGDFLIVPQKGN-LLIYT---EF-----G--KMLVQPNEICVIQRGMRFSIDVFE--ETRGYILEVYGVHFELPDL---  239 (471)
T ss_dssp             SSEEEEEEEEESC-EEEEE---TT-----E--EEEECTTEEEEECTTCCEEEECSS--SEEEEEEEEESCCEECCCC---
T ss_pred             CCCCEEEEEEeCC-EEEEE---ec-----c--cEEeccCCEEEECCccEEEEeeCC--CceEEEEEccCCccccccc---
Confidence            4678999999999 88776   32     2  367999999999999998885554  666655422221 123321   


Q ss_pred             eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccC--ceeEEEecCCcCCCCc---c-cCCCC------CCCceeeee
Q 020545           95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQT--GVLIIKLGQDESEKIP---L-PHQHG------NANLMVNNF  162 (325)
Q Consensus        95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~--~~~Iv~~~~~~~~~~~---~-~~p~~------~~~~~~~nl  162 (325)
                       =..|.+++..       ++-|..+....+.-  ..+  -.+++|...    .+.   . -+|..      ..-+++|||
T Consensus       240 -GpiGanglan-------~RDF~~PvA~~ed~--~~~~~~~vv~K~~G----~l~~~~~~hsPfDVVaWhGn~~PYkydl  305 (471)
T 1eyb_A          240 -GPIGANGLAN-------PRDFLIPIAWYEDR--QVPGGYTVINKYQG----KLFAAKQDVSPFNVVAWHGNYTPYKYNL  305 (471)
T ss_dssp             -GGGTTSCBSC-------GGGEEEECCCCCCC--EEEEEEEEEEEETT----EEEEEEEEECSCCEEEEEESCCCEEEEG
T ss_pred             -cccccCCccC-------hhhccCcccccccc--CCCccEEEEEEeCC----eeEEEecCCCCceEEeEcCcccCeEech
Confidence             0012222222       12222222111110  111  123444443    221   0 12321      235789999


Q ss_pred             cCCCCCeec------cCCeEEEEEcCCCCcccccccceEE----EEEecCCCccCCeecCC-CCEEEEEEeCcEEEEEEe
Q 020545          163 ANFPADFCV------KKAGMVTSFTGSNFPFLEQVGLSCT----ILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVG  231 (325)
Q Consensus       163 ~~~~p~~~~------~~gG~~~~~~~~~~p~L~~~gis~~----~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv~  231 (325)
                      .+-.|..+.      +.--.+.++. .+-|...-  ....    |-...+++++.|-||.| .+|+++.+.|.-..-   
T Consensus       306 ~~F~pI~svs~dH~dPSIftVltap-s~~pg~av--~dFViFpPRw~v~e~TfrpPyyHrNv~SEfmgli~G~y~ak---  379 (471)
T 1eyb_A          306 KNFMVINSVAFDHADPSIFTVLTAK-SVRPGVAI--ADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAK---  379 (471)
T ss_dssp             GGCBCCCCSSSSCCCGGGGEEEEEE-CSSTTCEE--EEEEEECSEEECCSSSCCSCCCBCCSCEEEEEECCC--------
T ss_pred             HHcccccccccccCCCCcceEEEcc-CCCCCceE--EeEeecCCccCCCCCccCCCCCccchhhhhhhhcccccccc---
Confidence            764443221      1111223332 22233221  1222    34678999999999998 567999999963221   


Q ss_pred             CCCceEEeEEecCccEEEECCccEE
Q 020545          232 LNAKLVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       232 p~g~~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                           .  ..+.+|.+-.=|.+.+|
T Consensus       380 -----~--~Gf~pGg~SLH~~~~pH  397 (471)
T 1eyb_A          380 -----Q--GGFLPGGGSLHSTMTPH  397 (471)
T ss_dssp             ----------CCTTCEEEECTTCCB
T ss_pred             -----c--cCcCCCceeccCCCcCC
Confidence                 0  12667777777777776

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=95.64  E-value=0.11  Score=44.60  Aligned_cols=72  Identities=15%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             cCCCccCCeec--CCCCEEEEEEeCcEEEEEEeCCC-c----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          201 DANAMLSPTYT--ADSVQVFYVVKGSGKAQIVGLNA-K----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       201 ~pg~~~~Ph~h--~~A~ei~yV~~G~~~~~vv~p~g-~----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+|-++-.|||  ..-.++++|++|+...-+++-.- .    +.....|.+  +..++||.|++|-..+-.++++++-..
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~  136 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEEeC
Confidence            37999999999  66789999999999877777531 1    334445654  689999999999988866656666554


Q ss_pred             C
Q 020545          272 T  272 (325)
Q Consensus       272 ~  272 (325)
                      +
T Consensus       137 s  137 (184)
T 2ixk_A          137 T  137 (184)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=95.58  E-value=1.3  Score=40.26  Aligned_cols=71  Identities=18%  Similarity=0.260  Sum_probs=47.9

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC-c----cEEEEEcCCCCEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR-C----FVVAIIAGPEGIE  266 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~-G----~~h~~~~g~~~~~  266 (325)
                      .+.+..++|++|+-..-...+.-.-++||++|++.+.     |.   ...|.+||..++-. |    -.....+. ++++
T Consensus       166 ~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v~-----g~---~~~l~~~d~~~~~~~~~~~~~~l~l~a~-~~a~  236 (277)
T 2p17_A          166 PVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVFG-----AD---NIEGKAGQALFFSRHNRGEETELNVTAR-EKLR  236 (277)
T ss_dssp             CEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEET-----TT---TEEEETTEEEEECCCCTTCEEEEEEEES-SSEE
T ss_pred             CCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEEC-----CC---ceEeCCCcEEEEcCCCCCccceEEEEeC-CCcE
Confidence            5677888999998776555445568999999997662     31   12488999999985 6    33334443 3566


Q ss_pred             EEEEe
Q 020545          267 CFSIT  271 (325)
Q Consensus       267 ~~~~~  271 (325)
                      ++.+.
T Consensus       237 ~Ll~~  241 (277)
T 2p17_A          237 LLLYA  241 (277)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55544

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=95.55  E-value=0.075  Score=50.06  Aligned_cols=73  Identities=10%  Similarity=0.129  Sum_probs=53.7

Q ss_pred             EEecC-CCccCCeecCCCCEEEEEEeCcEEEEEE-eCCC--------------------------------ceEEeEEec
Q 020545          198 LKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIV-GLNA--------------------------------KLVLDSEVE  243 (325)
Q Consensus       198 v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv-~p~g--------------------------------~~~~~~~l~  243 (325)
                      +-+.| |+-..|||.+ .+-+...+.|+=++.+. .|..                                ...++..|+
T Consensus       145 ~~~gp~g~~~~~H~D~-~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~  223 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDA-YTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLT  223 (342)
T ss_dssp             EEEECSSCCCCSEECS-SEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEEC
T ss_pred             EEEeCCCCCCCCeECC-hhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEEC
Confidence            55556 8899999954 45777788899999999 5431                                012456899


Q ss_pred             CccEEEECCccEEEEEcC-CCCEEEEEEe
Q 020545          244 AGQLLVVPRCFVVAIIAG-PEGIECFSIT  271 (325)
Q Consensus       244 ~Gdv~vvP~G~~h~~~~g-~~~~~~~~~~  271 (325)
                      +||+++||+|++|+..+. ++...-+++.
T Consensus       224 pGD~LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          224 PGTMLYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             TTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             CCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence            999999999999998775 4444445544

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=95.48  E-value=0.098  Score=45.51  Aligned_cols=70  Identities=13%  Similarity=0.114  Sum_probs=56.4

Q ss_pred             cCCCccCCeecCCCCEEEEEEe-CcEEEEEEeCC-----CceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeC
Q 020545          201 DANAMLSPTYTADSVQVFYVVK-GSGKAQIVGLN-----AKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT  272 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~~-G~~~~~vv~p~-----g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~  272 (325)
                      .+|.++..|+|+ -.++++|++ |+...-++|-.     |+ .....|..+..++||.|++|-..+-.++++++-..+
T Consensus        68 ~~GvlRGlH~h~-q~Klv~~~~~G~v~dV~VDlR~SpTfg~-~~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~~y~~s  143 (197)
T 1nxm_A           68 RKNVLRGLHAEP-WDKYISVADGGKVLGTWVDLREGETFGN-TYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVN  143 (197)
T ss_dssp             ETTBEEEEEECS-SCEEEEECSSCCEEEEEEECBSSTTTTC-EEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEES
T ss_pred             CCCCcceeeecc-cceEEEEcCCCEEEEEEEECCCCCCCCe-EEEEEeCCCcEEEeCCCeEEEEEeccCCeEEEEECC
Confidence            679999999995 559999999 99988888876     33 345578889999999999999888666666665443

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=95.47  E-value=0.11  Score=48.17  Aligned_cols=58  Identities=14%  Similarity=0.191  Sum_probs=38.4

Q ss_pred             ceEEEEEecCCCccCCeecCCCC-EEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545          193 LSCTILKLDANAMLSPTYTADSV-QVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG  261 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~-ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g  261 (325)
                      .++.++++.... .  .-. ++. .|+.|++| +.+..   +|.. .  .|++||.++||++..-+...|
T Consensus       230 F~v~~~~~~~~~-~--~~~-~~~~~il~v~~G-~~i~~---~~~~-~--~l~~G~~~~ipa~~~~~~i~g  288 (300)
T 1zx5_A          230 FGLEVVDVTGTA-E--IKT-GGVMNILYAAEG-YFILR---GKET-A--DLHRGYSCLVPASTDSFTVES  288 (300)
T ss_dssp             EEEEEEEEEEEE-E--EEC-CSBCEEEEEEES-CEEEE---SSSE-E--EECTTCEEEECTTCCEEEEEE
T ss_pred             EEEEEEEECCce-E--Eec-CCceEEEEEccc-EEEEe---CCeE-E--EEccceEEEEeCCCceEEEEe
Confidence            345555555321 1  122 567 89999999 88765   3332 2  599999999999986555444

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=95.40  E-value=0.11  Score=45.36  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=54.6

Q ss_pred             ecCCCccCCeecC---CCCEEEEEEeCcEEEEEEeCCC-c----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEE
Q 020545          200 LDANAMLSPTYTA---DSVQVFYVVKGSGKAQIVGLNA-K----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFS  269 (325)
Q Consensus       200 l~pg~~~~Ph~h~---~A~ei~yV~~G~~~~~vv~p~g-~----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~  269 (325)
                      ..+|.++..|||.   .-.++++|++|++..-++|-.- +    +.....|.+  +..++||.|++|-..+-.++++++-
T Consensus        77 ~~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~a~~~Y  156 (205)
T 3ryk_A           77 AEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMY  156 (205)
T ss_dssp             SSTTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSSEEEEE
T ss_pred             CCCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCCEEEEE
Confidence            3689999999995   3689999999999888888531 1    234456764  7999999999998888556666554


Q ss_pred             Ee
Q 020545          270 IT  271 (325)
Q Consensus       270 ~~  271 (325)
                      ..
T Consensus       157 ~~  158 (205)
T 3ryk_A          157 KV  158 (205)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=95.32  E-value=0.023  Score=48.15  Aligned_cols=63  Identities=13%  Similarity=-0.036  Sum_probs=45.6

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC--CCEEEEEEe
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS--SDVVIVFVG   81 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~--~~l~~~~~~   81 (325)
                      +.+.+-+|.+...+..||++|+ ...    .+      .. ...+++||.++.|+|..|...+..+  ++++++.+.
T Consensus        52 pG~~~p~H~H~g~ee~~VL~G~-f~~----~~------~~-~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~  116 (165)
T 3cjx_A           52 PGLTLPLHFHTGTVHMYTISGC-WYY----TE------YP-GQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFML  116 (165)
T ss_dssp             TTCBCCEEEESSCEEEEEEESE-EEE----TT------CT-TSCEETTEEEEECTTCEECEECCTTCSSCEEEEEEE
T ss_pred             CCCcCCcccCCCCEEEEEEEEE-EEE----CC------Cc-eEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEEEE
Confidence            4555667766689999999999 443    12      10 1458999999999999999999653  367566554

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=95.28  E-value=0.23  Score=43.41  Aligned_cols=72  Identities=10%  Similarity=0.122  Sum_probs=54.3

Q ss_pred             cCCCccCCeecCC---CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTAD---SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~~---A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++-.|||..   -.++++|++|+..--+||-.-.     +.....|.+  +..++||.|++|-..+-.++++++-.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYM  134 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCCeEEEEe
Confidence            5799999999965   5899999999998888886411     234456755  58999999999998886555655544


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       135 ~s  136 (205)
T 1oi6_A          135 LS  136 (205)
T ss_dssp             ES
T ss_pred             cC
Confidence            43

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=95.22  E-value=0.21  Score=42.87  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             cCCCccCCeecC---CCCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTA---DSVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~---~A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++-.|||.   .-.++++|++|+..--+++-...     +.....|.+  +..++||.|++|-..+-.++++++-.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEE
Confidence            379999999995   56899999999998888886411     234445654  68999999999998886655655544


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       135 ~s  136 (183)
T 1dzr_A          135 AT  136 (183)
T ss_dssp             ES
T ss_pred             cC
Confidence            33

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=95.03  E-value=0.051  Score=51.33  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             EEEecC-CCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc----------------------------------eEEeEE
Q 020545          197 ILKLDA-NAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK----------------------------------LVLDSE  241 (325)
Q Consensus       197 ~v~l~p-g~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~----------------------------------~~~~~~  241 (325)
                      .+-|.+ |+...+|+.+. +-+..+++|+=++.++.|...                                  +.++..
T Consensus       186 ~l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  264 (349)
T 3d8c_A          186 LLLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  264 (349)
T ss_dssp             EEEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             eEEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEE
Confidence            356665 56778888765 688889999999999987410                                  246678


Q ss_pred             ecCccEEEECCccEEEEEcCC-CC-EEEEEE
Q 020545          242 VEAGQLLVVPRCFVVAIIAGP-EG-IECFSI  270 (325)
Q Consensus       242 l~~Gdv~vvP~G~~h~~~~g~-~~-~~~~~~  270 (325)
                      |++||+++||.|+.|+..+.+ ++ ...+.+
T Consensus       265 l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~  295 (349)
T 3d8c_A          265 VGPGDVLYIPMYWWHHIESLLNGGITITVNF  295 (349)
T ss_dssp             ECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             ECCCCEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence            999999999999999977754 33 344444

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=94.96  E-value=0.18  Score=43.94  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=54.6

Q ss_pred             cCCCccCCeecC---CCCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTA---DSVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~---~A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++..|+|.   .-.++++|++|+..--+||-.-.     +.....|.+  +..++||+|++|-..+-.++++++-.
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~a~~~Y~  131 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVFL  131 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCCeEEEEe
Confidence            689999999985   46899999999999889985311     233345654  88999999999988886666665544


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       132 ~t  133 (201)
T 4hn1_A          132 CS  133 (201)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=94.90  E-value=0.26  Score=43.40  Aligned_cols=72  Identities=7%  Similarity=0.034  Sum_probs=53.7

Q ss_pred             cCCCccCCeecCC---CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTAD---SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~~---A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++-.|||..   -.++++|++|++.--+++-.-.     +.....|.+  +..++||.|++|-..+-.++++++-.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~~ly~  142 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  142 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCCeEEEEe
Confidence            4799999999975   5899999999998777885421     234445655  57999999999998886555655544


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       143 ~s  144 (216)
T 2c0z_A          143 SS  144 (216)
T ss_dssp             ES
T ss_pred             cC
Confidence            33

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=94.83  E-value=0.069  Score=46.37  Aligned_cols=58  Identities=9%  Similarity=0.070  Sum_probs=43.6

Q ss_pred             ccCC-CCeEEEEEeCCeEEEEEEcCCCCC-----------------------------CCcceEEEEeeCCcEEEeCCCC
Q 020545           14 TEND-LHVIPIIIPCELGVAGMVLPNDQK-----------------------------HSQEEIVLGLRKGDVIPVPLGS   63 (325)
Q Consensus        14 ~h~~-a~ei~yV~~G~~g~~~~v~~~~~~-----------------------------~~~~~~~~~l~~GDv~~vP~G~   63 (325)
                      .|.| .+-+..++.|+ =++.+..|....                             ...+-....|++||+++||+|.
T Consensus       139 ~H~D~~~n~~~qv~G~-K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~LyiP~gW  217 (235)
T 4gjz_A          139 LHQDPQQNFLVQVMGR-KYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKY  217 (235)
T ss_dssp             EECCSSEEEEEEEESC-EEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEEEECTTC
T ss_pred             eeeccccceEEEEeee-EeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCEEEeCCCC
Confidence            3555 56788899999 999998875310                             0112335689999999999999


Q ss_pred             eEEEEecCC
Q 020545           64 ASWWYNNGS   72 (325)
Q Consensus        64 ~~~~~N~g~   72 (325)
                      -|+..|.++
T Consensus       218 ~H~V~~l~~  226 (235)
T 4gjz_A          218 WHYVRALDL  226 (235)
T ss_dssp             EEEEEESSS
T ss_pred             cEEEEECCC
Confidence            999999864

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=94.62  E-value=0.38  Score=42.59  Aligned_cols=72  Identities=10%  Similarity=0.080  Sum_probs=53.5

Q ss_pred             cCCCccCCeecCC---CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTAD---SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~~---A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++-.|||..   -.++++|++|++.--+||-.-.     +.....|.+  +..++||.|++|-..+-.++++++-.
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~vly~  153 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  153 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCCEEEEEe
Confidence            5899999999965   5799999999998888875311     234445654  58999999999998885555655544


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       154 ~s  155 (225)
T 1upi_A          154 CS  155 (225)
T ss_dssp             ES
T ss_pred             cC
Confidence            33

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=94.49  E-value=0.23  Score=43.48  Aligned_cols=67  Identities=10%  Similarity=0.033  Sum_probs=47.0

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEc--CCCCCCCcceEEEEeeCCcEEEeCC--CCeEEEEec-CCCCEEEEEEe
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVL--PNDQKHSQEEIVLGLRKGDVIPVPL--GSASWWYNN-GSSDVVIVFVG   81 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~--~~~~~~~~~~~~~~l~~GDv~~vP~--G~~~~~~N~-g~~~l~~~~~~   81 (325)
                      +|.+....+++|++|+ ....+-.  .++... .......+++||++++++  |.+|-+.|. ++++.+.+-++
T Consensus        94 iHdH~~~~~~~VL~G~-l~e~~y~~~~~g~~l-~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~~~avsLHvY  165 (208)
T 2gm6_A           94 IHDHTVWGLIGMLRGA-EYSQPFVLDGSGRPV-LHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVSISIHVY  165 (208)
T ss_dssp             SBCCSSCEEEEEEESC-EEEEEEEECTTSCEE-ECSCCEEECTTCEEEEBTTTBCCEEEEESCSSSCEEEEEEE
T ss_pred             cccCCcceEEEEeccc-EEEEEeecCCCCccc-cccceEEeCCCCEEEECCCCCCeEEeccCCCCCcEEEEEEE
Confidence            5633458999999999 7666533  111000 001146899999999999  999999998 67777777665

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=94.40  E-value=0.26  Score=42.81  Aligned_cols=66  Identities=11%  Similarity=0.032  Sum_probs=46.3

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEc-CCCCC-CCcceEEEEeeCCcEEEe-CCCCeEEEEecC-CCCEEEEEEe
Q 020545           15 ENDLHVIPIIIPCELGVAGMVL-PNDQK-HSQEEIVLGLRKGDVIPV-PLGSASWWYNNG-SSDVVIVFVG   81 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~-~~~~~-~~~~~~~~~l~~GDv~~v-P~G~~~~~~N~g-~~~l~~~~~~   81 (325)
                      |.++..+++|++|+ .....-. ++... .-.......+++||+.++ |++.+|.+.|.+ +++++=+=++
T Consensus        88 H~~s~g~i~VL~G~-l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~~~avSlHvY  157 (200)
T 3eln_A           88 HTDSHCFLKLLQGN-LKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLY  157 (200)
T ss_dssp             CTTCEEEEEEEESC-EEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSSCCEEEEEEE
T ss_pred             CCCceEEEEEEeee-EEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCCCCEEEEEeC
Confidence            55688999999999 7777544 22100 001122578999999999 888899999998 5666555554

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=94.39  E-value=0.25  Score=48.71  Aligned_cols=66  Identities=21%  Similarity=0.280  Sum_probs=48.3

Q ss_pred             EEEEecCCCcc--CCeecCCCCEEEEEEeCcEEEEEEeCCC-------------------ceEEeEEecCccEEEECCcc
Q 020545          196 TILKLDANAML--SPTYTADSVQVFYVVKGSGKAQIVGLNA-------------------KLVLDSEVEAGQLLVVPRCF  254 (325)
Q Consensus       196 ~~v~l~pg~~~--~Ph~h~~A~ei~yV~~G~~~~~vv~p~g-------------------~~~~~~~l~~Gdv~vvP~G~  254 (325)
                      +.+.+.|+|-.  .|||-+ -+-++.-+.|+=++.+..|..                   ...++..|++||+++||+|+
T Consensus       166 ~N~Y~tp~Gs~g~~pH~D~-~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~  244 (489)
T 4diq_A          166 SNVYLTPPNSQGFAPHYDD-IEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGF  244 (489)
T ss_dssp             EEEEEECSSBCCSCCBCCS-SEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTC
T ss_pred             ceEEecCCCcccccCccCC-cceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCC
Confidence            45678887754  599943 344555566788999988742                   12346789999999999999


Q ss_pred             EEEEEcCC
Q 020545          255 VVAIIAGP  262 (325)
Q Consensus       255 ~h~~~~g~  262 (325)
                      +|+..+.+
T Consensus       245 ~H~~~s~~  252 (489)
T 4diq_A          245 IHQAECQD  252 (489)
T ss_dssp             EEEEEBCS
T ss_pred             ceEEEecC
Confidence            99987753

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=94.20  E-value=0.26  Score=46.12  Aligned_cols=72  Identities=14%  Similarity=0.245  Sum_probs=51.0

Q ss_pred             EEEEecCC-CccCCeecCCCCEEEEEEeCcEEEEEEeCCC--------c---------------------eEEeEEecCc
Q 020545          196 TILKLDAN-AMLSPTYTADSVQVFYVVKGSGKAQIVGLNA--------K---------------------LVLDSEVEAG  245 (325)
Q Consensus       196 ~~v~l~pg-~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g--------~---------------------~~~~~~l~~G  245 (325)
                      ..+-+.+. +-..+|+.+. +-+...+.|+=++.++.|..        .                     +.++..|++|
T Consensus       169 s~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pG  247 (338)
T 3al5_A          169 SVFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAG  247 (338)
T ss_dssp             EEEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTT
T ss_pred             ceeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCC
Confidence            34555654 4455688654 56777889999999998731        0                     1466789999


Q ss_pred             cEEEECCccEEEEEcCCCCEEEEE
Q 020545          246 QLLVVPRCFVVAIIAGPEGIECFS  269 (325)
Q Consensus       246 dv~vvP~G~~h~~~~g~~~~~~~~  269 (325)
                      |+++||+|+.|+..+.+. ...+.
T Consensus       248 D~LyiP~gWwH~v~~l~~-sisvn  270 (338)
T 3al5_A          248 DVLFIPALWFHNVISEEF-GVGVN  270 (338)
T ss_dssp             CEEEECTTCEEEEEESSC-EEEEE
T ss_pred             CEEEECCCCeEEEeeCCC-EEEEE
Confidence            999999999999777543 33443

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=94.18  E-value=0.39  Score=40.87  Aligned_cols=77  Identities=6%  Similarity=-0.029  Sum_probs=53.7

Q ss_pred             eeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEee---CCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545           10 IVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLR---KGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus        10 ~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~---~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      +=-.| |....++++|++|+ ...-+++-.. .+.  .+-....|.   ..-.++||+|..|=++|.++++++++...+ 
T Consensus        65 lRG~H~h~~q~klv~~v~G~-v~dv~vD~R~-~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~~s-  141 (174)
T 3ejk_A           65 VKAWKRHSLMTQLFAVPVGC-IHVVLYDGRE-KSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANCTD-  141 (174)
T ss_dssp             EEEEEEESSCCEEEEEEESE-EEEEEECCCT-TCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEEES-
T ss_pred             EECcEecCCCceEEEEEeeE-EEEEEEeCCC-CCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEEECC-
Confidence            33345 45578999999999 9999987432 000  122356777   567999999999999999887777766653 


Q ss_pred             CCCCCCC
Q 020545           84 SRAYVPG   90 (325)
Q Consensus        84 ~~~~~p~   90 (325)
                       ...+|.
T Consensus       142 -~~Y~p~  147 (174)
T 3ejk_A          142 -IPHRQG  147 (174)
T ss_dssp             -SCCCTT
T ss_pred             -CccCCC
Confidence             334443

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=93.91  E-value=0.2  Score=47.10  Aligned_cols=73  Identities=11%  Similarity=0.011  Sum_probs=50.2

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEE-cCCCC----C------------------------CCcceEEEEeeCCcEEE
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMV-LPNDQ----K------------------------HSQEEIVLGLRKGDVIP   58 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v-~~~~~----~------------------------~~~~~~~~~l~~GDv~~   58 (325)
                      .+.+-||+-..+-+...+.|+ =++.+. .|+..    .                        .........|++||+++
T Consensus       151 g~~~~~H~D~~dnfl~Qv~G~-Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~pGD~Ly  229 (342)
T 1vrb_A          151 GGGFKAHFDAYTNLIFQIQGE-KTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLY  229 (342)
T ss_dssp             SCCCCSEECSSEEEEEEEESC-EEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEEE
T ss_pred             CCCCCCeECChhcEEEEEEEE-EEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECCCcEEE
Confidence            445556664456777888899 889888 55421    0                        00122467899999999


Q ss_pred             eCCCCeEEEEecCCCCEEEEEEe
Q 020545           59 VPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        59 vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      ||+|..|+..+.+++...-+++.
T Consensus       230 iP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          230 LPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             ECTTCEEEEECSSCEEEEEEEEC
T ss_pred             eCCCccEEEEECCCCceEEEEEC
Confidence            99999999999865544444444

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=93.06  E-value=0.43  Score=38.48  Aligned_cols=72  Identities=15%  Similarity=0.004  Sum_probs=52.6

Q ss_pred             CCCccCCe---e-cCCCCEEEEEEeCcEEEEEEeCCCc-e-EEeEEecCccEEEECCccEEEEEcCCCCEEE-EEEeCC
Q 020545          202 ANAMLSPT---Y-TADSVQVFYVVKGSGKAQIVGLNAK-L-VLDSEVEAGQLLVVPRCFVVAIIAGPEGIEC-FSITTS  273 (325)
Q Consensus       202 pg~~~~Ph---~-h~~A~ei~yV~~G~~~~~vv~p~g~-~-~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~-~~~~~s  273 (325)
                      |.+++..|   . ++...+..-|++|+.+.-.++.+|+ . .-.--..+|+..+||.+..|....-.++++| +.|+..
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f~leFyc~  101 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVA  101 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEEEC
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCEEEEEEEEeC
Confidence            56688888   4 5666688899999999988887765 1 1112367999999999999998764446665 566643

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=93.06  E-value=0.34  Score=45.44  Aligned_cols=67  Identities=9%  Similarity=0.042  Sum_probs=51.0

Q ss_pred             EEEecC-CCccCCeecCCCC-EEEEEEeCcEEEEEEeCCCc--------------------------------------e
Q 020545          197 ILKLDA-NAMLSPTYTADSV-QVFYVVKGSGKAQIVGLNAK--------------------------------------L  236 (325)
Q Consensus       197 ~v~l~p-g~~~~Ph~h~~A~-ei~yV~~G~~~~~vv~p~g~--------------------------------------~  236 (325)
                      .+-+.+ |+....|+.+..+ -|..++.|+=++.++.|.-.                                      +
T Consensus       175 ~~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~  254 (336)
T 3k2o_A          175 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFK  254 (336)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGC
T ss_pred             EEEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCc
Confidence            355666 4566778877753 79999999999999987420                                      1


Q ss_pred             EEeEEecCccEEEECCccEEEEEcCCC
Q 020545          237 VLDSEVEAGQLLVVPRCFVVAIIAGPE  263 (325)
Q Consensus       237 ~~~~~l~~Gdv~vvP~G~~h~~~~g~~  263 (325)
                      .+...+++||+++||.|+.|+..+.+.
T Consensus       255 ~~~~~l~pGd~l~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          255 PLEILQKPGETVFVPGGWWHVVLNLDT  281 (336)
T ss_dssp             CEEEEECTTCEEEECTTCEEEEEESSC
T ss_pred             eEEEEECCCCEEEeCCCCcEEEecCCC
Confidence            245679999999999999999877554

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=93.01  E-value=0.61  Score=38.23  Aligned_cols=66  Identities=9%  Similarity=-0.059  Sum_probs=48.1

Q ss_pred             ceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcE-EEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            8 HIIVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDV-IPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         8 ~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv-~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .+.-.+| |....+++++++|+ ..+-+=+ +.     ...+..|.+.+. +.||+|+-|-+.|.++. .+++.+.
T Consensus        45 g~~RG~H~Hk~~~q~li~l~Gs-~~v~ldD-g~-----~~~~~~L~~~~~gL~IppgvWh~~~~~s~~-avllvla  112 (141)
T 2pa7_A           45 EEPRGFHAHKKLEQVLVCLNGS-CRVILDD-GN-----IIQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVLA  112 (141)
T ss_dssp             SCCEEEEEESSCCEEEEEEESC-EEEEEEC-SS-----CEEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEEE
T ss_pred             CCEECcCcCCCceEEEEEEccE-EEEEEEC-Cc-----EEEEEEECCCCcEEEeCCCEEEEEEEcCCC-eEEEEEC
Confidence            3445567 88889999999999 8888833 32     334566766655 99999999999998775 5555444

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=92.76  E-value=1.9  Score=37.74  Aligned_cols=80  Identities=8%  Similarity=0.010  Sum_probs=61.2

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeC--CCceEE---eEEecCccEEEECCc--cEEEEEc-C-C
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL--NAKLVL---DSEVEAGQLLVVPRC--FVVAIIA-G-P  262 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p--~g~~~~---~~~l~~Gdv~vvP~G--~~h~~~~-g-~  262 (325)
                      .+++..+...||--..+|=|. +..++.|++|+.+.++...  +|...-   ...+.+||+.+++.+  .+|-..| + +
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d  150 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSD  150 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCC
Confidence            357888999999999999999 9999999999999988662  332111   146999999999977  8998654 3 5


Q ss_pred             CCEEEEEEeC
Q 020545          263 EGIECFSITT  272 (325)
Q Consensus       263 ~~~~~~~~~~  272 (325)
                      +.++-+=++.
T Consensus       151 ~~avSLHvYg  160 (211)
T 3uss_A          151 RTSISIHVYG  160 (211)
T ss_dssp             SCEEEEEEES
T ss_pred             CCEEEEEEcC
Confidence            6566555543

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=92.58  E-value=2.4  Score=35.83  Aligned_cols=127  Identities=15%  Similarity=0.134  Sum_probs=78.6

Q ss_pred             CeEEEEEcCCC-------CcccccccceEEEEEecCCCccCCeecC-CCCEEEEEEeCc-EEEEEEeCCCce---EEeEE
Q 020545          174 AGMVTSFTGSN-------FPFLEQVGLSCTILKLDANAMLSPTYTA-DSVQVFYVVKGS-GKAQIVGLNAKL---VLDSE  241 (325)
Q Consensus       174 gG~~~~~~~~~-------~p~L~~~gis~~~v~l~pg~~~~Ph~h~-~A~ei~yV~~G~-~~~~vv~p~g~~---~~~~~  241 (325)
                      ||++++.....       +..-+. -.++-..-|.+|.  .=|||- +++|+-+...|. .++-++.++|..   ++-.+
T Consensus        28 GG~yrEt~rs~~~v~~~~~~~~R~-~~TaIYfLL~~~~--~S~~HRv~sdEiW~~~~G~pL~l~~~~~dG~~~~~~LG~d  104 (172)
T 3loi_A           28 GGWFRETYRSDVQVEAEGFDGKRS-VLTMIYYLMQAGQ--PDPFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSILGNP  104 (172)
T ss_dssp             SSEEEEEEECSCEECCTTSSSCEE-SCEEEEEEEETTC--CEEEEECSSEEEEEEEEESCEEEEEECTTSCEEEEEESCT
T ss_pred             CCeEEEEEECcCcccCCCCCCCcc-cceEEEEEEcCCC--CccCEEecCCEEEEEEcCCCEEEEEEcCCCceEEEEeCCC
Confidence            66666655442       222232 2456667788887  457774 599999999997 489999998852   22235


Q ss_pred             ecCcc---EEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhh
Q 020545          242 VEAGQ---LLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKE  312 (325)
Q Consensus       242 l~~Gd---v~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~  312 (325)
                      +..|+   .++||+|....-..  .+..+++..-+  |++.|     +=|.-.+++-|.+.|.--++.+++|-.
T Consensus       105 ~~~Ge~~pQ~vVP~G~WqaA~~--~~~~LVsctVa--PGF~f-----~dfel~~~~~L~~~~P~~~~~I~~lt~  169 (172)
T 3loi_A          105 LEHPEARHQVVVPRRVWFAQEV--DGYCLASVLVA--PGFDF-----KDFSLGKREELIKEYPQHRDVIMRCTS  169 (172)
T ss_dssp             TTSTTCBSEEEECTTCEEEEEE--SSEEEEEEEEE--SCCCG-----GGCEECCHHHHHHHCGGGHHHHHHTSC
T ss_pred             cccCCcceEEEECCCEEEEEEe--CCcEEEEEEEc--CCccc-----hhcEEcCHHHHHHHCchHHHHHHHhcc
Confidence            67888   78999999865333  33333333322  22211     111124777778888766788888754

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=92.00  E-value=0.62  Score=45.85  Aligned_cols=61  Identities=11%  Similarity=0.094  Sum_probs=43.2

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCC---------------CCcceEEEEeeCCcEEEeCCCCeEEEEecCCCC
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQK---------------HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSD   74 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~---------------~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~   74 (325)
                      ||+-+.+-++.-+.|+ =++.+-.|....               .........|++||+++||+|..|+..+.+++.
T Consensus       180 pH~D~~DvFllQv~G~-KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~  255 (489)
T 4diq_A          180 PHYDDIEAFVLQLEGR-KLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVH  255 (489)
T ss_dssp             CBCCSSEEEEEEEEEC-EEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEEBCSSCC
T ss_pred             CccCCcceEEEEEeeE-EEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEEecCCCc
Confidence            4554456666777888 788887765310               011223579999999999999999999987653

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=91.87  E-value=0.35  Score=47.12  Aligned_cols=59  Identities=15%  Similarity=0.114  Sum_probs=42.7

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCC---C--------CCcceEEEEeeCCcEEEeCCCCeEEEEecC
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQ---K--------HSQEEIVLGLRKGDVIPVPLGSASWWYNNG   71 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~---~--------~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g   71 (325)
                      -||+-..+-+...+.|+ =++.+-.|..+   .        .........|++||+++||+|..|+..+.+
T Consensus       154 ~~H~D~~dvf~~Qv~G~-Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~  223 (442)
T 2xdv_A          154 PPHYDDVEVFILQLEGE-KHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPA  223 (442)
T ss_dssp             CSEECSSEEEEEEEESC-EEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred             cceECCcceEEEEEEeE-EEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence            35554456777788899 88888777521   0        001223578999999999999999999875

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=91.71  E-value=0.77  Score=44.71  Aligned_cols=82  Identities=17%  Similarity=0.089  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          175 GMVTSFTGSNFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       175 G~~~~~~~~~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      |..+.+. ..-+.++. |+++.....+. +| -.--+|.++++++|+.+|+++++-..  |  .+  .+++||+.|||+|
T Consensus       141 Gl~tl~g-ngD~~~~~-G~aI~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G--~L--~v~pgei~VIPRG  211 (471)
T 1eyb_A          141 GLHTLCG-AGDIKSNN-GLAIHIFLCNT-SMENRCFYNSDGDFLIVPQKGNLLIYTEF--G--KM--LVQPNEICVIQRG  211 (471)
T ss_dssp             TEEEEEE-ESCGGGTC-CEEEEEEEECS-CCCSEEEEESSEEEEEEEEESCEEEEETT--E--EE--EECTTEEEEECTT
T ss_pred             chhheec-cCCccccc-ceEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec--c--cE--EeccCCEEEECCc
Confidence            5555553 33345543 56655444444 46 45568889999999999999887443  4  23  4899999999999


Q ss_pred             cEEEEEcCCCCEE
Q 020545          254 FVVAIIAGPEGIE  266 (325)
Q Consensus       254 ~~h~~~~g~~~~~  266 (325)
                      ..+...-.+ .++
T Consensus       212 i~frv~l~~-p~R  223 (471)
T 1eyb_A          212 MRFSIDVFE-ETR  223 (471)
T ss_dssp             CCEEEECSS-SEE
T ss_pred             cEEEEeeCC-Cce
Confidence            998764433 544

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=91.12  E-value=0.22  Score=41.49  Aligned_cols=55  Identities=4%  Similarity=-0.347  Sum_probs=40.6

Q ss_pred             ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEe
Q 020545            6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYN   69 (325)
Q Consensus         6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N   69 (325)
                      .+.+.+-+|++...|.+||++|+ -..    ..+    .......+++|+.++-|+|+.|+..-
T Consensus        54 ~pG~~~p~H~H~g~ee~~VL~G~-~~~----~~G----d~~~~~~~~aGsYv~ePpGs~H~p~~  108 (153)
T 3bal_A           54 PAGSSFASHIHAGPGEYFLTKGK-MEV----RGG----EQEGGSTAYAPSYGFESSGALHGKTF  108 (153)
T ss_dssp             CTTEEECCEEESSCEEEEEEESE-EEE----TTC----GGGTSEEEESSEEEEECTTCEESCCE
T ss_pred             CCCCCccCccCCCCEEEEEEEEE-EEe----cCc----cccCccccCCCeEEEcCCCCccccee
Confidence            35778889988899999999999 332    222    11113568999999999999998543

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=91.08  E-value=0.57  Score=45.75  Aligned_cols=79  Identities=10%  Similarity=0.069  Sum_probs=55.7

Q ss_pred             EEEecC-CCccCCeecCCC-CEEEEEEeCcEEEEEEeCCCc------------------------eEEeEEecCccEEEE
Q 020545          197 ILKLDA-NAMLSPTYTADS-VQVFYVVKGSGKAQIVGLNAK------------------------LVLDSEVEAGQLLVV  250 (325)
Q Consensus       197 ~v~l~p-g~~~~Ph~h~~A-~ei~yV~~G~~~~~vv~p~g~------------------------~~~~~~l~~Gdv~vv  250 (325)
                      .+-|.| |+...-|+.+.. +-|..++.|+=+.-++.|...                        +.+...+++||+++|
T Consensus       199 ~~~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfI  278 (451)
T 2yu1_A          199 YCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVI  278 (451)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEE
T ss_pred             EEEEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEe
Confidence            344555 556666777764 568899999999999998521                        234567999999999


Q ss_pred             CCccEEEEEcCCCCE-EEEEEeCCCC
Q 020545          251 PRCFVVAIIAGPEGI-ECFSITTSTR  275 (325)
Q Consensus       251 P~G~~h~~~~g~~~~-~~~~~~~s~~  275 (325)
                      |.|+.|+..+-++.+ .-.-|.++.|
T Consensus       279 PsGWwH~V~nledsIait~NF~~~~n  304 (451)
T 2yu1_A          279 PSGWIHAVYTPTDTLVFGGNFLHSFN  304 (451)
T ss_dssp             CTTCEEEEECSSCEEEEEEEECCSSS
T ss_pred             CCCceEEEecCCCeEEEeeeeCCccc
Confidence            999999988765433 2234555554

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=90.69  E-value=0.6  Score=43.86  Aligned_cols=65  Identities=11%  Similarity=-0.068  Sum_probs=46.6

Q ss_pred             cCC-CCeEEEEEeCCeEEEEEEcCCCC---------------------CC---------CcceEEEEeeCCcEEEeCCCC
Q 020545           15 END-LHVIPIIIPCELGVAGMVLPNDQ---------------------KH---------SQEEIVLGLRKGDVIPVPLGS   63 (325)
Q Consensus        15 h~~-a~ei~yV~~G~~g~~~~v~~~~~---------------------~~---------~~~~~~~~l~~GDv~~vP~G~   63 (325)
                      |.| .+-+..++.|+ =++-+..|...                     +.         +.+-....|++||+++||+|.
T Consensus       199 H~D~~~n~~~qv~G~-K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~LyiP~gW  277 (349)
T 3d8c_A          199 HYGEQQNFFAQIKGY-KRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYW  277 (349)
T ss_dssp             ECCSEEEEEEEEESC-EEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEECTTCEEEECTTC
T ss_pred             eECChhcEEEEEece-EEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEECCCCEEEECCCC
Confidence            445 46888899999 89998877520                     00         113456799999999999999


Q ss_pred             eEEEEecCC-CCEEEEEE
Q 020545           64 ASWWYNNGS-SDVVIVFV   80 (325)
Q Consensus        64 ~~~~~N~g~-~~l~~~~~   80 (325)
                      -|+..|.++ .-...+.+
T Consensus       278 wH~V~~l~d~~~sisvn~  295 (349)
T 3d8c_A          278 WHHIESLLNGGITITVNF  295 (349)
T ss_dssp             EEEEEECTTSCCEEEEEE
T ss_pred             cEEEEEcCCCCcEEEEEE
Confidence            999999874 33334443

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=90.29  E-value=0.67  Score=45.16  Aligned_cols=78  Identities=13%  Similarity=0.158  Sum_probs=54.5

Q ss_pred             EEecC-CCccCCeecCCCC-EEEEEEeCcEEEEEEeCCCc------------------------eEEeEEecCccEEEEC
Q 020545          198 LKLDA-NAMLSPTYTADSV-QVFYVVKGSGKAQIVGLNAK------------------------LVLDSEVEAGQLLVVP  251 (325)
Q Consensus       198 v~l~p-g~~~~Ph~h~~A~-ei~yV~~G~~~~~vv~p~g~------------------------~~~~~~l~~Gdv~vvP  251 (325)
                      +-+.+ |+....|..+..+ -|..+++|+=+.-++.|...                        +-+...+++||+++||
T Consensus       235 ~~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIP  314 (447)
T 3kv4_A          235 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  314 (447)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecC
Confidence            44555 5566678877744 67899999999999988521                        2245679999999999


Q ss_pred             CccEEEEEcCCCCEE-EEEEeCCCC
Q 020545          252 RCFVVAIIAGPEGIE-CFSITTSTR  275 (325)
Q Consensus       252 ~G~~h~~~~g~~~~~-~~~~~~s~~  275 (325)
                      .|+.|+..+-++.+. ---+.++.|
T Consensus       315 sGWwH~V~nledsIai~~NF~~~~n  339 (447)
T 3kv4_A          315 TGWIHAVLTPVDCLAFGGNFLHSLN  339 (447)
T ss_dssp             TTCEEEEEESSCEEEEEEEECCSTT
T ss_pred             CCCeEEEecCCCEEEEccccccccC
Confidence            999999877654332 224444444

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=90.23  E-value=4.5  Score=35.54  Aligned_cols=131  Identities=13%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             cCCeEEEEEcCCCCc------ccccccceEEEEEecCCCccCCeecC-CCCEEEEEEeCcE-EEEEEeCCCc--------
Q 020545          172 KKAGMVTSFTGSNFP------FLEQVGLSCTILKLDANAMLSPTYTA-DSVQVFYVVKGSG-KAQIVGLNAK--------  235 (325)
Q Consensus       172 ~~gG~~~~~~~~~~p------~L~~~gis~~~v~l~pg~~~~Ph~h~-~A~ei~yV~~G~~-~~~vv~p~g~--------  235 (325)
                      ++||++++.......      .-+. -.++-..-|.+|..  =|||. ++.|+-+...|.. .+-++.++|+        
T Consensus        34 PEGG~yrEt~Rs~~~v~~~~~~~R~-~~TaIYfLL~~g~~--S~~HRv~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~  110 (225)
T 3m3i_A           34 PEGGYYSEVVRSAHKVDNEEGNRRH-AYTTIYFLCTPESP--SHLHRLCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQ  110 (225)
T ss_dssp             TTSSEEEEEEECSSEEECTTSCEEE-SCEEEEEEECSSSC--EEEEECSSEEEEEEEEESCEEEEEEESSSTTTTC----
T ss_pred             CCCceEEEEEECCCcccCCCCCCcc-cceeEEEEecCCCC--cccEEecCCEEEEEECCCCEEEEEEcCCCccccccccc
Confidence            368888777655432      2222 24566667888884  58885 5999999999985 7888988871        


Q ss_pred             -------------------eE----EeEEecCcc--EEEECCccEEEE-EcCCC-----CEEEEEEeCCCCCceeeecCc
Q 020545          236 -------------------LV----LDSEVEAGQ--LLVVPRCFVVAI-IAGPE-----GIECFSITTSTRPALGKLGGK  284 (325)
Q Consensus       236 -------------------~~----~~~~l~~Gd--v~vvP~G~~h~~-~~g~~-----~~~~~~~~~s~~p~~~~laG~  284 (325)
                                         ..    +-.++..|+  .++||+|....- ..+++     +..+++..-+  |++.|    
T Consensus       111 ~~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtVa--PGFdF----  184 (225)
T 3m3i_A          111 PPAAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVS--PGFDY----  184 (225)
T ss_dssp             --------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEEE--SCCCG----
T ss_pred             ccccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEEc--CCccc----
Confidence                               11    123456676  579999998653 33332     3344433322  22111    


Q ss_pred             cccccCCCHHHHHHHcCCCHHHHHHhhh
Q 020545          285 QSVMNGFSASVVQLALNVNEEFLKFFKE  312 (325)
Q Consensus       285 ~svl~~~~~evla~af~v~~~~v~~l~~  312 (325)
                       +=|.-++++-|.+.|.--++.+++|-.
T Consensus       185 -~DFel~~~~~L~~~~P~~~~~I~~lt~  211 (225)
T 3m3i_A          185 -RDFEIFTQAQLMELYPQHEAVIKQMAY  211 (225)
T ss_dssp             -GGCEECBHHHHHHHCGGGHHHHHHHSB
T ss_pred             -hhcEecCHHHHHHHCchHHHHHHHhch
Confidence             011124677777788777788888854

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=89.71  E-value=0.65  Score=45.79  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=50.2

Q ss_pred             EEEecC-CCccCCeecCCCC-EEEEEEeCcEEEEEEeCCCc------------------------eEEeEEecCccEEEE
Q 020545          197 ILKLDA-NAMLSPTYTADSV-QVFYVVKGSGKAQIVGLNAK------------------------LVLDSEVEAGQLLVV  250 (325)
Q Consensus       197 ~v~l~p-g~~~~Ph~h~~A~-ei~yV~~G~~~~~vv~p~g~------------------------~~~~~~l~~Gdv~vv  250 (325)
                      .+-|.+ |+....|+.+..+ -|..+++|+=++-++.|...                        +-+...+++||+++|
T Consensus       269 ~~~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfI  348 (488)
T 3kv5_D          269 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFV  348 (488)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEE
T ss_pred             EEEEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEe
Confidence            344555 6677788887754 67899999999999988410                        234567999999999


Q ss_pred             CCccEEEEEcCC
Q 020545          251 PRCFVVAIIAGP  262 (325)
Q Consensus       251 P~G~~h~~~~g~  262 (325)
                      |.|+.|+..+-+
T Consensus       349 PsGWwH~V~nle  360 (488)
T 3kv5_D          349 PTGWIHAVLTSQ  360 (488)
T ss_dssp             CTTCEEEEEEEE
T ss_pred             CCCceEEeeCCC
Confidence            999999977643

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=89.24  E-value=0.55  Score=44.62  Aligned_cols=66  Identities=14%  Similarity=0.210  Sum_probs=49.8

Q ss_pred             EEecC-CCccCCeecCCCC-EEEEEEeCcEEEEEEeCCCc------------------------eEEeEEecCccEEEEC
Q 020545          198 LKLDA-NAMLSPTYTADSV-QVFYVVKGSGKAQIVGLNAK------------------------LVLDSEVEAGQLLVVP  251 (325)
Q Consensus       198 v~l~p-g~~~~Ph~h~~A~-ei~yV~~G~~~~~vv~p~g~------------------------~~~~~~l~~Gdv~vvP  251 (325)
                      +-+.| |+....|+.+..+ -|..+++|+=+.-++.|...                        +-+...+++||+++||
T Consensus       151 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIP  230 (371)
T 3k3o_A          151 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  230 (371)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeC
Confidence            44444 6677778887755 47889999999999877421                        2345689999999999


Q ss_pred             CccEEEEEcCCC
Q 020545          252 RCFVVAIIAGPE  263 (325)
Q Consensus       252 ~G~~h~~~~g~~  263 (325)
                      .|+.|+..+-++
T Consensus       231 sGWwH~V~nled  242 (371)
T 3k3o_A          231 TGWIHAVLTPVD  242 (371)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCCeEEEecCCC
Confidence            999999776433

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=89.16  E-value=0.83  Score=42.66  Aligned_cols=59  Identities=14%  Similarity=0.080  Sum_probs=42.8

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCC----------------C---------CCcceEEEEeeCCcEEEeCCCCeEEE
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQ----------------K---------HSQEEIVLGLRKGDVIPVPLGSASWW   67 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~----------------~---------~~~~~~~~~l~~GDv~~vP~G~~~~~   67 (325)
                      +|+-..+-+..++.|+ =++.+..|...                +         .+.+-....|++||+++||+|..|+.
T Consensus       182 ~H~D~~~n~~~qv~G~-K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~LyiP~gWwH~v  260 (338)
T 3al5_A          182 THYDVMDNLLIQVTGK-KRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPALWFHNV  260 (338)
T ss_dssp             EECCSSEEEEEECSSC-EEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCEEEECTTCEEEE
T ss_pred             ceECCcccEEEEEEEE-EEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCEEEECCCCeEEE
Confidence            4443345777788999 88988877420                0         01124567899999999999999999


Q ss_pred             EecCC
Q 020545           68 YNNGS   72 (325)
Q Consensus        68 ~N~g~   72 (325)
                      .|.+.
T Consensus       261 ~~l~~  265 (338)
T 3al5_A          261 ISEEF  265 (338)
T ss_dssp             EESSC
T ss_pred             eeCCC
Confidence            99853

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=88.21  E-value=1  Score=43.12  Aligned_cols=65  Identities=12%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             EEEecC-CCccCCeecCCCC-EEEEEEeCcEEEEEEeCCCc------------------------eEEeEEecCccEEEE
Q 020545          197 ILKLDA-NAMLSPTYTADSV-QVFYVVKGSGKAQIVGLNAK------------------------LVLDSEVEAGQLLVV  250 (325)
Q Consensus       197 ~v~l~p-g~~~~Ph~h~~A~-ei~yV~~G~~~~~vv~p~g~------------------------~~~~~~l~~Gdv~vv  250 (325)
                      .+-|.| |+....|+.+..+ -|..+++|+=+.-++.|...                        +-+...+++||+++|
T Consensus       178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfI  257 (397)
T 3kv9_A          178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFV  257 (397)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEE
T ss_pred             EEEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEe
Confidence            466666 5555669988754 67899999999999988521                        234567999999999


Q ss_pred             CCccEEEEEcC
Q 020545          251 PRCFVVAIIAG  261 (325)
Q Consensus       251 P~G~~h~~~~g  261 (325)
                      |.|+.|+..+-
T Consensus       258 PsGW~H~V~nl  268 (397)
T 3kv9_A          258 PTGWIHAVLTS  268 (397)
T ss_dssp             CTTCEEEEEEE
T ss_pred             CCCCeEEccCC
Confidence            99999997664

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=87.79  E-value=2.4  Score=36.64  Aligned_cols=68  Identities=12%  Similarity=-0.003  Sum_probs=47.9

Q ss_pred             ccccCCCCeEEEEEe-CCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           12 CLTENDLHVIPIIIP-CELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~-G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      --|.+.-.++++|++ |+ ...-+|+-.++.-=.+.....|..+..++||+|..|=+++..+. .+++...
T Consensus        74 GlH~h~q~Klv~~~~~G~-v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~y~~  142 (197)
T 1nxm_A           74 GLHAEPWDKYISVADGGK-VLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSYLV  142 (197)
T ss_dssp             EEEECSSCEEEEECSSCC-EEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEEEE
T ss_pred             eeeecccceEEEEcCCCE-EEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEEEEC
Confidence            345335679999999 99 88888876410000133467888899999999999999998765 5555444

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=87.76  E-value=0.71  Score=44.21  Aligned_cols=66  Identities=14%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             EEecC-CCccCCeecCCC-CEEEEEEeCcEEEEEEeCCCc------------------------eEEeEEecCccEEEEC
Q 020545          198 LKLDA-NAMLSPTYTADS-VQVFYVVKGSGKAQIVGLNAK------------------------LVLDSEVEAGQLLVVP  251 (325)
Q Consensus       198 v~l~p-g~~~~Ph~h~~A-~ei~yV~~G~~~~~vv~p~g~------------------------~~~~~~l~~Gdv~vvP  251 (325)
                      +-+.| |+....|..+.. +-|..+++|+=+.-++.|...                        +-+...+++||+++||
T Consensus       178 ~~mGp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIP  257 (392)
T 3pua_A          178 CLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIP  257 (392)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeC
Confidence            34444 667777887774 578899999999988887521                        1245679999999999


Q ss_pred             CccEEEEEcCCC
Q 020545          252 RCFVVAIIAGPE  263 (325)
Q Consensus       252 ~G~~h~~~~g~~  263 (325)
                      .|+.|+..+-++
T Consensus       258 sGWwH~V~nled  269 (392)
T 3pua_A          258 SGWIYATLTPVD  269 (392)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCceEEEecCCC
Confidence            999999776543

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=87.11  E-value=2.5  Score=38.34  Aligned_cols=67  Identities=10%  Similarity=0.116  Sum_probs=46.6

Q ss_pred             cceEEEEEecCCCcc---CCeecCCC--C------EEEEE-Ee---CcEEEEEEeCCCceEEeEEecCccEEEECCccEE
Q 020545          192 GLSCTILKLDANAML---SPTYTADS--V------QVFYV-VK---GSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       192 gis~~~v~l~pg~~~---~Ph~h~~A--~------ei~yV-~~---G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                      .|-|..+ ++|+|.-   .||-|.+.  .      |+-|. +.   |.+.--|...+|.---...++-||++.||.|+ |
T Consensus       152 ~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-H  229 (270)
T 2qjv_A          152 SLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-H  229 (270)
T ss_dssp             SCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-C
T ss_pred             eEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-C
Confidence            3566666 8999987   99999875  5      88876 43   44444444444321112469999999999999 8


Q ss_pred             EEEc
Q 020545          257 AIIA  260 (325)
Q Consensus       257 ~~~~  260 (325)
                      -..+
T Consensus       230 p~~a  233 (270)
T 2qjv_A          230 PVAT  233 (270)
T ss_dssp             CEEE
T ss_pred             CCcC
Confidence            8554

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=86.56  E-value=3.1  Score=34.49  Aligned_cols=84  Identities=11%  Similarity=0.091  Sum_probs=57.2

Q ss_pred             cCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCC--CCEEEEEEeCc-EEEEEEeCCCc---eEEeEEecCc
Q 020545          172 KKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTAD--SVQVFYVVKGS-GKAQIVGLNAK---LVLDSEVEAG  245 (325)
Q Consensus       172 ~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~--A~ei~yV~~G~-~~~~vv~p~g~---~~~~~~l~~G  245 (325)
                      ++||++++.-......-+.. .++-.--|.++..  =|||-.  |+|+-|...|. ..+-++.++|.   .++-.++..|
T Consensus        20 PEGG~yrEt~Rs~~~~~R~~-~TaIYfLL~~g~~--S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~G   96 (154)
T 1znp_A           20 PEGGFYHQTFRDKAGGERGH-STAIYYLLEKGVR--SHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEG   96 (154)
T ss_dssp             TTSSEEEEEEECSSSTTTCS-CEEEEEEEESSCC--EEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTT
T ss_pred             CCCccEEEEEeCCCCCCCcc-eeEEEEEecCCCC--CcceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCcccC
Confidence            46888887765543333333 3444555777764  577764  99999999997 67778888774   1233456778


Q ss_pred             cE--EEECCccEEEE
Q 020545          246 QL--LVVPRCFVVAI  258 (325)
Q Consensus       246 dv--~vvP~G~~h~~  258 (325)
                      ++  ++||+|....-
T Consensus        97 e~pQ~vVP~G~WqaA  111 (154)
T 1znp_A           97 ERPQVIVPANCWQSA  111 (154)
T ss_dssp             EESEEEECTTCEEEE
T ss_pred             cccEEEEcCCEEEEe
Confidence            75  89999998653

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=86.51  E-value=3.5  Score=37.02  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=50.1

Q ss_pred             EEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCcc--EEEEEcC-C-CCEEEE
Q 020545          197 ILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCF--VVAIIAG-P-EGIECF  268 (325)
Q Consensus       197 ~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~--~h~~~~g-~-~~~~~~  268 (325)
                      ...+.||+=+.||=|.+-..+.||++|+..-.  |+-|+..   .+++|||-+.-+|.  .|.+.+. + +.++++
T Consensus        68 ~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn~~---~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~l  138 (256)
T 2vec_A           68 QEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGNHV---QASAGEALLLSTQPGVSYSEHNLSKDKPLTRM  138 (256)
T ss_dssp             EEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSCEE---EEETTEEEEECCCTTCCEEEEECCSSSCEEEE
T ss_pred             ccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCCEE---EECCCeEEEEECCCCeEEEEEECCCCceEEEE
Confidence            35577877778999988888999999986554  6667643   59999999997765  6888873 3 455544

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=86.31  E-value=1.4  Score=39.67  Aligned_cols=61  Identities=10%  Similarity=0.043  Sum_probs=43.7

Q ss_pred             eccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCC--CCeEEEEecCC-CCEEEEEEe
Q 020545           11 VCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPL--GSASWWYNNGS-SDVVIVFVG   81 (325)
Q Consensus        11 ~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~--G~~~~~~N~g~-~~l~~~~~~   81 (325)
                      |-|| |.+-..|.||++|+   +.--+..+      . ...+++|||-+.-|  |+.|--+|..+ ++++++-+-
T Consensus        77 f~~HPHrg~EtvTyvl~G~---~~H~DS~G------n-~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlW  141 (256)
T 2vec_A           77 FQPRTYPKVDILNVILDGE---AEYRDSEG------N-HVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLW  141 (256)
T ss_dssp             EEEECCSSEEEEEEEEESE---EEEEETTS------C-EEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEE
T ss_pred             cCCcCCCCcEEEEEEEeeE---EEEEeCCC------C-EEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEE
Confidence            4555 55667799999999   22223322      2 46899999999977  56999999754 578877765

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=85.63  E-value=4.3  Score=34.56  Aligned_cols=63  Identities=10%  Similarity=-0.092  Sum_probs=44.1

Q ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           16 NDLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      ..-.++++|++|+ ...-+|+-.. .+.  .+.....|.+  +..++||+|..|=++|.++. ++++...
T Consensus        70 ~~q~Klv~vv~G~-v~dV~vD~R~-~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~~  136 (184)
T 2ixk_A           70 QAQGKLVRATLGE-VFDVAVDLRR-GSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYKT  136 (184)
T ss_dssp             SCCCEEEEEEESE-EEEEEEECBT-TSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEEE
T ss_pred             CCcCEEEEEeCCe-EEEEEEECCC-CCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEEeC
Confidence            3467999999999 8777776431 000  1233456665  68999999999999999876 5555444

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=85.57  E-value=21  Score=32.45  Aligned_cols=74  Identities=16%  Similarity=0.108  Sum_probs=47.1

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      .+.+..+.|++|+-..-...+.-.-++||++|++.+.     +.. ....+.++.+++...|-.....+ ++++++++.+
T Consensus       168 ~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~-----g~~-~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LLl  241 (290)
T 1j1l_A          168 PTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG-----PDD-AQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  241 (290)
T ss_dssp             CEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES-----CTT-SCEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEEC-----Ccc-cceeccCceEEEecCCCEEEEEEcCCCCcEEEEE
Confidence            5667788999998775555444568999999998772     210 00135567777776666544444 3566666555


Q ss_pred             e
Q 020545          271 T  271 (325)
Q Consensus       271 ~  271 (325)
                      .
T Consensus       242 ~  242 (290)
T 1j1l_A          242 A  242 (290)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=85.35  E-value=3.7  Score=35.82  Aligned_cols=105  Identities=10%  Similarity=0.115  Sum_probs=59.7

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEc-C-CCCCCCcceEEEEeeCCcEEEeCCC--CeEEEEec-CCCCEEEEEEeecCCCC
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVL-P-NDQKHSQEEIVLGLRKGDVIPVPLG--SASWWYNN-GSSDVVIVFVGETSRAY   87 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~-~-~~~~~~~~~~~~~l~~GDv~~vP~G--~~~~~~N~-g~~~l~~~~~~~~~~~~   87 (325)
                      +|-+.+..++.|++|+ -....-. + ++.- ........+.+||+++++++  .+|-+.|. ++++.+-+=++-.....
T Consensus        88 iHDH~swg~~~Vl~G~-l~e~~y~~~~~g~~-~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d~~avSLHvYg~pl~~  165 (211)
T 3uss_A           88 VHDHRVWGLIGMLRGA-EYSQPYAFDAGGRP-HPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDRTSISIHVYGANIGA  165 (211)
T ss_dssp             SBCCSSCEEEEEEESC-EEEEEEEECTTSCE-EECSCCEEECTTCEEEEBTTTBCCEEEEESCSSSCEEEEEEESSCGGG
T ss_pred             CCCCCeeEEEEeeece-EEEEEeeeCCCCCc-ccccceEEecCCCEEEECCCCCCEEEEccCCCCCCEEEEEEcCCCCCc
Confidence            4533489999999999 6665532 2 2100 00011367999999999987  89999998 46676666555221111


Q ss_pred             CCCcceeeeecccc-ccccCCChhHHhhhcCCCHH
Q 020545           88 VPGEFSYFLLTGAQ-GILGGFSSEFTGRAYNMNEN  121 (325)
Q Consensus        88 ~p~~~~~f~laG~~-s~l~~f~~~vLa~af~v~~~  121 (325)
                      . +. ..|-..|.. .+.++.+.++|-.-|+.+.+
T Consensus       166 ~-~r-~~fd~tG~~~~f~s~y~~~~~~~~~~~~~~  198 (211)
T 3uss_A          166 V-RR-AVFSAEGEEKPFISGYSNSRLPNIWDLSKE  198 (211)
T ss_dssp             C-CE-EEECTTSCEEEECCCCSCSEEECCCCGGGC
T ss_pred             c-ee-EEECCCCCEEEeeecccCCCCCcccccccc
Confidence            1 11 123234432 33355555555555555444

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=85.34  E-value=4.8  Score=34.32  Aligned_cols=63  Identities=13%  Similarity=0.015  Sum_probs=44.4

Q ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           16 NDLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      ..-.++++|++|+ ..--+|+-.. .+.  .+.....|.+  +..++||+|..|=++|.++. ++++...
T Consensus        69 ~~q~klv~vv~G~-v~dV~VD~R~-~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~~  135 (185)
T 1ep0_A           69 KPQGKLVRVIRGE-IFDVAVDLRK-NSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYKC  135 (185)
T ss_dssp             SCCCEEEEEEESE-EEEEEEECCT-TCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEEE
T ss_pred             ccccEEEEEeCCe-EEEEEEECCC-CCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEec
Confidence            3567999999999 8777777431 000  1233456655  68999999999999999876 5555444

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=85.04  E-value=22  Score=32.26  Aligned_cols=68  Identities=12%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             ceEEEEEecCCC---ccCCeecCCCCEEEEEEe----CcEEEEEEe-CCCceEEeEEecCccEEEECCccEEEEEcCCCC
Q 020545          193 LSCTILKLDANA---MLSPTYTADSVQVFYVVK----GSGKAQIVG-LNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEG  264 (325)
Q Consensus       193 is~~~v~l~pg~---~~~Ph~h~~A~ei~yV~~----G~~~~~vv~-p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~  264 (325)
                      +-+..-.+.|||   -..||-|-+..|..|..+    |. .++++. |+..+.+  .++-||++++|..++|.- .|.+.
T Consensus       180 llmg~evltpgg~WSSyPpHkHDrr~EeyyYF~l~~~gf-v~q~~g~p~Etrhi--~V~n~daVlvP~wh~h~~-~G~~~  255 (282)
T 1xru_A          180 LSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDAC-VFHMMGQPQETRHI--VMHNEQAVISPSWSIHSG-VGTKA  255 (282)
T ss_dssp             CEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCC-EEEEEEETTEEEEE--EECSSEEEEECTTCEEEE-EESSC
T ss_pred             EEEEEEEEeCCCCcCCCCCccCCCCceEEEEEEeCCCCE-EEEEeCCCCCeeEE--EEECCCEEEeCCCCCCCC-CCccc
Confidence            345666777887   478999987778878776    33 333333 3322222  579999999996566662 35555

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=84.96  E-value=1.8  Score=42.17  Aligned_cols=54  Identities=11%  Similarity=0.142  Sum_probs=41.7

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCC-----------C---------CcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQK-----------H---------SQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~-----------~---------~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      ++.|..|+.|+ =++-++.|...+           .         ..+-....+++||+++||+|..|+.+|..+
T Consensus       253 ts~w~~vi~Gr-K~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPsGWwH~V~nled  326 (447)
T 3kv4_A          253 TSVWYHVLKGE-KIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVD  326 (447)
T ss_dssp             CEEEEEEEESE-EEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECTTCEEEEEESSC
T ss_pred             CceeEEEeeeE-EEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecCCCCeEEEecCCC
Confidence            45799999999 889888876310           0         012235689999999999999999999865

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=83.80  E-value=6.8  Score=34.74  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             EEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc--cEEEEEcC-C-CCEEEE
Q 020545          197 ILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC--FVVAIIAG-P-EGIECF  268 (325)
Q Consensus       197 ~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G--~~h~~~~g-~-~~~~~~  268 (325)
                      .-.+.||+=+.||=|.+=..+.||++|+..-  -|+-|+..   .+++|||-..-+|  ..|.+.+. + +.++++
T Consensus        45 ~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H--~DS~Gn~~---~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~l  115 (242)
T 1tq5_A           45 DDVIEAGQGFGTHPHKDMEILTYVLEGTVEH--QDSMGNKE---QVPAGEFQIMSAGTGIRHSEYNPSSTERLHLY  115 (242)
T ss_dssp             EEEECTTCEEEEEEECSCEEEEEEEESEEEE--EESSSCEE---EEETTCEEEEECTTCEEEEEECCCSSCCEEEE
T ss_pred             cceeCCCCcCCCcCCCCcEEEEEEEEeEEEE--EeCCCCcE---EECCCcEEEEECCCCcEEEEEcCCCCCeEEEE
Confidence            5567888777899999888899999998554  46666643   5999999999666  56888873 2 445544

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=83.78  E-value=8.1  Score=32.80  Aligned_cols=69  Identities=12%  Similarity=0.032  Sum_probs=46.1

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      .-.++++|++|+ ..--+|+-.. .+.  .+.....|.+  +..++||+|..|=+++.++. .+++...+  +..+|.
T Consensus        70 ~q~Klv~vv~G~-v~dV~VD~R~-~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~~s--~~Y~p~  142 (183)
T 1dzr_A           70 AQGKLVRCAVGE-VFDVAVDIRK-ESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEFLYKAT--NYYSPS  142 (183)
T ss_dssp             CCCEEEEEEESE-EEEEEEECCT-TCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEEES--SCCCTT
T ss_pred             CCcEEEEEeCCe-EEEEEEECCC-CCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEEcC--CccCHh
Confidence            457999999999 8777777442 000  1233456665  58999999999999999776 44444432  344443

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=83.51  E-value=1.4  Score=43.56  Aligned_cols=62  Identities=16%  Similarity=0.203  Sum_probs=47.0

Q ss_pred             cCCCccCCeecCCC-CEEEEEEeCcEEEEEEeCCCc------------------------eEEeEEecCccEEEECCccE
Q 020545          201 DANAMLSPTYTADS-VQVFYVVKGSGKAQIVGLNAK------------------------LVLDSEVEAGQLLVVPRCFV  255 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A-~ei~yV~~G~~~~~vv~p~g~------------------------~~~~~~l~~Gdv~vvP~G~~  255 (325)
                      ..|+....|..+.. +-|..|++|+=+.-++.|...                        ......+++||+++||.|+.
T Consensus       304 ~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW~  383 (528)
T 3pur_A          304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWI  383 (528)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCCce
Confidence            34667777887764 478899999999988887410                        12345799999999999999


Q ss_pred             EEEEcCC
Q 020545          256 VAIIAGP  262 (325)
Q Consensus       256 h~~~~g~  262 (325)
                      |+..+-.
T Consensus       384 HaV~tle  390 (528)
T 3pur_A          384 HAVLTPV  390 (528)
T ss_dssp             EEEEEEE
T ss_pred             EEEecCC
Confidence            9977643

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=83.08  E-value=9.7  Score=32.95  Aligned_cols=61  Identities=5%  Similarity=-0.038  Sum_probs=42.8

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      -.++++|++|+ ..--+|+-.. .+.  .+.....|.+  +..++||+|..|=+++.++. .+++...
T Consensus        71 q~Klv~vv~G~-v~dV~VDlR~-~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~~  135 (205)
T 1oi6_A           71 TAKYVYCARGK-AMDIVIDIRV-GSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TVMSYML  135 (205)
T ss_dssp             CCEEEEEEESC-EEEEEECCCB-TCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT-EEEEEEE
T ss_pred             CceEEEEeCCE-EEEEEEECCC-CCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC-eEEEEec
Confidence            47999999999 8777787431 000  1233456665  58899999999999999876 4444444

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=83.00  E-value=6.9  Score=34.76  Aligned_cols=79  Identities=6%  Similarity=0.064  Sum_probs=58.7

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeC-cEEEEEEeCCCc----------------eEEe----EEecCccEEEEC
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKG-SGKAQIVGLNAK----------------LVLD----SEVEAGQLLVVP  251 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G-~~~~~vv~p~g~----------------~~~~----~~l~~Gdv~vvP  251 (325)
                      -+...+.+.+|=...-|+|+.-.|=.++.-| ...+.+...+..                +.+.    -+|++|+-+-+|
T Consensus       106 YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~  185 (246)
T 3kmh_A          106 YAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICLP  185 (246)
T ss_dssp             EEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEEC
T ss_pred             ceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEecC
Confidence            4677888999999999999999998888887 666666654311                1111    268999999999


Q ss_pred             CccEEEEEcCCC--CEEEEEEe
Q 020545          252 RCFVVAIIAGPE--GIECFSIT  271 (325)
Q Consensus       252 ~G~~h~~~~g~~--~~~~~~~~  271 (325)
                      +|..|+..+..+  ++.+-.+-
T Consensus       186 Pg~~H~F~ae~g~G~vligEVS  207 (246)
T 3kmh_A          186 PGLYHSFWAEAGFGDVLVGEVS  207 (246)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEE
T ss_pred             CCCEEEEEecCCCccEEEEEcc
Confidence            999999888665  35544443

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=82.95  E-value=1.1  Score=42.81  Aligned_cols=54  Identities=9%  Similarity=0.041  Sum_probs=41.3

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCC-----------CC---------cceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQK-----------HS---------QEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~-----------~~---------~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      ++.|..|++|+ =++-++.|...+           .+         .+-....+++||+++||+|..|+.+|..+
T Consensus       196 Ts~w~~vi~Gr-K~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGWwH~V~nled  269 (392)
T 3pua_A          196 ASAWYHVLKGE-KTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWIYATLTPVD  269 (392)
T ss_dssp             CEEEEEEEEEE-EEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTCEEEEEEEEE
T ss_pred             Cceeeeeccce-EEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCceEEEecCCC
Confidence            46899999999 888888776310           00         11235689999999999999999999854

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=82.75  E-value=3.4  Score=40.10  Aligned_cols=55  Identities=16%  Similarity=0.111  Sum_probs=38.0

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecC---CCCEEEEE
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNG---SSDVVIVF   79 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g---~~~l~~~~   79 (325)
                      +...|++|++|+ |.+..   ++    .......|++||+++||++....+.+.+   .+.++++.
T Consensus       378 ~~~~illv~~G~-g~i~~---~~----~~~~~~~l~~G~~~fvpa~~~~~i~g~~~~~~~~~~~~~  435 (440)
T 1pmi_A          378 NGPSIVIATNGK-GTIQI---TG----DDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYR  435 (440)
T ss_dssp             SSCEEEEEEESE-EEEEE---TT----CGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCEEEE
T ss_pred             CCcEEEEEEeCe-EEEEe---CC----cccceEEeccCCEEEEeCCCcEEEEEecccCCCcEEEEE
Confidence            467899999999 99876   32    1010147999999999999666666652   34555544

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=82.40  E-value=9.7  Score=33.50  Aligned_cols=68  Identities=12%  Similarity=0.004  Sum_probs=45.5

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCCC--CcceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQKH--SQEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~~--~~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      -.++++|++|+ ..--+|+-.. .+  -.+.....|.+  +..++||+|..|=++|.++. .+++...+  +..+|.
T Consensus        90 q~KlV~vv~G~-v~dV~VDlR~-~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~vly~~s--~~Y~p~  161 (225)
T 1upi_A           90 QAKYVTCVSGS-VFDVVVDIRE-GSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVMYLCS--AEYNPQ  161 (225)
T ss_dssp             CCEEEEEEESE-EEEEEECCCB-TCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEEEEES--SCCCTT
T ss_pred             cceEEEEeCCe-EEEEEEECCC-CCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC-EEEEEecC--CccCHH
Confidence            47999999999 8777776431 00  01233456665  57999999999999999876 44444332  344443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=82.30  E-value=7.5  Score=34.01  Aligned_cols=68  Identities=7%  Similarity=-0.051  Sum_probs=45.5

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCCC--CcceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQKH--SQEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~~--~~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      ..++++|++|+ ..--+|+-.. .+  -.+.....|.+  +..++||+|..|=++|.++. .+++...+  +..+|.
T Consensus        79 q~KlV~vv~G~-v~dV~VDlR~-~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~~ly~~s--~~Y~p~  150 (216)
T 2c0z_A           79 QAKYVTCVRGA-VFDVVVDLRV-GSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATLCYLSS--GTYDPA  150 (216)
T ss_dssp             CCEEEEEEESE-EEEEEEECCB-TCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEEES--SCCCTT
T ss_pred             cceEEEEeCCe-EEEEEEECCC-CCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC-eEEEEecC--CccCHH
Confidence            47999999999 8777777432 00  01233556666  47999999999999999876 44444332  444444

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=82.27  E-value=1.9  Score=40.39  Aligned_cols=57  Identities=11%  Similarity=0.039  Sum_probs=43.3

Q ss_pred             cCCC---CeEEEEEeCCeEEEEEEcCCCCC---------------C-------------------CcceEEEEeeCCcEE
Q 020545           15 ENDL---HVIPIIIPCELGVAGMVLPNDQK---------------H-------------------SQEEIVLGLRKGDVI   57 (325)
Q Consensus        15 h~~a---~ei~yV~~G~~g~~~~v~~~~~~---------------~-------------------~~~~~~~~l~~GDv~   57 (325)
                      |.|.   +-+..++.|+ =++.+..|+...               .                   ..+-....+++||++
T Consensus       188 H~D~~~~~~~~~~v~G~-K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~~~~~l~pGd~l  266 (336)
T 3k2o_A          188 HIDPLGTSAWNALVQGH-KRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV  266 (336)
T ss_dssp             ECCGGGCEEEEEEEESC-EEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCCEEEEECTTCEE
T ss_pred             ccCCCccceeeEEEeee-EEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCceEEEEECCCCEE
Confidence            5553   3599999999 999999876310               0                   012235689999999


Q ss_pred             EeCCCCeEEEEecCC
Q 020545           58 PVPLGSASWWYNNGS   72 (325)
Q Consensus        58 ~vP~G~~~~~~N~g~   72 (325)
                      +||+|..|+..|.++
T Consensus       267 ~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          267 FVPGGWWHVVLNLDT  281 (336)
T ss_dssp             EECTTCEEEEEESSC
T ss_pred             EeCCCCcEEEecCCC
Confidence            999999999999975

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=81.82  E-value=5.1  Score=38.97  Aligned_cols=54  Identities=17%  Similarity=0.150  Sum_probs=41.8

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCC------------C--------CcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQK------------H--------SQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~------------~--------~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      ++-|..++.|+ =++-++.|...+            .        ..+-+...+++||+++||+|.-|+.+|..+
T Consensus       218 ts~w~avi~Gr-K~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGWwH~V~nled  291 (451)
T 2yu1_A          218 TSVWYHIHQGG-KVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTD  291 (451)
T ss_dssp             CEEEEEEEESC-EEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECTTCEEEEECSSC
T ss_pred             cchhhheecce-EEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCCCceEEEecCCC
Confidence            45789999999 899998887310            0        012335689999999999999999999865

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=81.79  E-value=2.6  Score=37.53  Aligned_cols=62  Identities=10%  Similarity=0.064  Sum_probs=44.4

Q ss_pred             eccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCC--CCeEEEEecCC-CCEEEEEEee
Q 020545           11 VCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPL--GSASWWYNNGS-SDVVIVFVGE   82 (325)
Q Consensus        11 ~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~--G~~~~~~N~g~-~~l~~~~~~~   82 (325)
                      |-|| |.+-..|.||++|+   +.=-+..+      . ...+++|||-..-|  |+.|--+|..+ ++++.+-+--
T Consensus        54 f~~HPHrg~EtvTyvl~G~---~~H~DS~G------n-~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv  119 (242)
T 1tq5_A           54 FGTHPHKDMEILTYVLEGT---VEHQDSMG------N-KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI  119 (242)
T ss_dssp             EEEEEECSCEEEEEEEESE---EEEEESSS------C-EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE
T ss_pred             CCCcCCCCcEEEEEEEEeE---EEEEeCCC------C-cEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEE
Confidence            4566 76778899999999   22222222      2 36899999999966  58899999754 5787777653

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=81.63  E-value=1.7  Score=42.74  Aligned_cols=54  Identities=15%  Similarity=0.140  Sum_probs=41.3

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCC--------------------CCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQK--------------------HSQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~--------------------~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      +..|..++.|+ =++-+..|...+                    ...+-....+++||+++||+|..|+.+|..+
T Consensus       288 t~~w~~vv~G~-K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPsGWwH~V~nled  361 (488)
T 3kv5_D          288 TSVWYHVLWGE-KIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQD  361 (488)
T ss_dssp             CEEEEEEEEEE-EEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECTTCEEEEEEEEE
T ss_pred             CceeeeccCee-EEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeCCCceEEeeCCCC
Confidence            45689999999 899898885210                    0112335689999999999999999999854

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=81.30  E-value=8.7  Score=33.30  Aligned_cols=68  Identities=10%  Similarity=0.021  Sum_probs=46.4

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      -.++++|++|+ ...-+|+-.. .+.  .+-....|.+  +-.++||+|.+|=++|.++. ..++...+  +..+|.
T Consensus        94 q~KlV~vv~G~-v~DV~VDlR~-~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-a~~~Y~~s--~~Y~p~  165 (205)
T 3ryk_A           94 QTKLIQVMQGA-IYDVIVDLRK-DSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH-TIVMYKVD--EYYSAD  165 (205)
T ss_dssp             CCEEEEEEESE-EEEEEEECCT-TSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS-EEEEEEES--SCCCTT
T ss_pred             ceEEEEEeCCe-EEEEEEECCC-CCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC-EEEEEEcC--CCcCCC
Confidence            57999999999 8888887432 000  1223556765  78999999999999999865 44444332  444454

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=80.97  E-value=5.3  Score=34.44  Aligned_cols=62  Identities=16%  Similarity=0.060  Sum_probs=42.7

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCC-CCCcceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQ-KHSQEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~-~~~~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      ..++++|++|+ ...-+|+-... .--.+.....|.+  +..++||+|..|=++|.++. .+++...
T Consensus        89 q~Klv~vv~G~-v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~-a~~ly~~  153 (196)
T 1wlt_A           89 QGKIIFVPKGR-ILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS-IVIYFIT  153 (196)
T ss_dssp             CEEEEEEEESE-EEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE-EEEEEEE
T ss_pred             CceEEEEeCCE-EEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEEe
Confidence            47999999999 87777764320 0001233566765  78999999999999999774 4444443

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=80.64  E-value=6.8  Score=37.96  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             ceEEEEEec--CCC-ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEE
Q 020545          193 LSCTILKLD--ANA-MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       193 is~~~v~l~--pg~-~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                      .++.++++.  +++ ...  .......|+.|++|++++..  .++... ...|++||+++||++-..
T Consensus       357 F~v~~~~~~~~~~~~~~~--~~~~~~~illv~~G~g~i~~--~~~~~~-~~~l~~G~~~fvpa~~~~  418 (440)
T 1pmi_A          357 FSVLQTIFDKSKGGKQVI--EGLNGPSIVIATNGKGTIQI--TGDDST-KQKIDTGYVFFVAPGSSI  418 (440)
T ss_dssp             CEEEEEECCTTTCCEEEE--CCCSSCEEEEEEESEEEEEE--TTCGGG-CEEEETTCEEEECTTCCE
T ss_pred             EEEEEEEecCCCCceeEE--ecCCCcEEEEEEeCeEEEEe--CCcccc-eEEeccCCEEEEeCCCcE
Confidence            567777777  342 221  12357799999999999875  222011 025899999999999433

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=80.57  E-value=3.6  Score=31.89  Aligned_cols=54  Identities=13%  Similarity=0.101  Sum_probs=41.5

Q ss_pred             EEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEE
Q 020545          195 CTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLV  249 (325)
Q Consensus       195 ~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~v  249 (325)
                      +....+.+|-+.-..= -.++.+.+|++|.+++...+++|+...-..+.+||++-
T Consensus        28 ~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G   81 (149)
T 2pqq_A           28 MSEVTLARGDTLFHEG-DPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIG   81 (149)
T ss_dssp             CEEEEECTTCEEECTT-SEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEES
T ss_pred             ceEEEeCCCCEEECCC-CCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEec
Confidence            4567777777654333 23678999999999999999988776667899999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	1e-26
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	2e-26
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	0.002
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	5e-24
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	2e-16
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	5e-22
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	1e-06
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	8e-19
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	1e-09
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	2e-17
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	2e-09
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	1e-15
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	2e-06
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	2e-15
d1fxza1	239	b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe	2e-14
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	6e-14
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	2e-11
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	7e-12
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	5e-11
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	9e-12
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	1e-07
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	4e-11
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	5e-10
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	2e-05
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	6e-05
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	7e-04
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	0.001

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score =  101 bits (253), Expect = 1e-26
 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 1/158 (0%)

Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
            D    +AG VT+ T  +FP L  + LS     L  NAM  P Y  ++  + Y + G   
Sbjct: 16  PDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRAL 75

Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
            Q+V  N + V D E++ G++L+VP+ FVVA  +  +  E  S  T+  P +G L G  S
Sbjct: 76  IQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANS 135

Query: 287 VMNGFSASVVQLALNVNEEFLKFFKENVATSEILIPPK 324
           ++N     V+Q   N+  +  +  K N    + L+PP+
Sbjct: 136 LLNALPEEVIQHTFNLKSQQARQIKNN-NPFKFLVPPQ 172

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score =  100 bits (251), Expect = 2e-26
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGK 226
           ADF   KAG +++      P L Q GLS   + L  N + SP +  ++  V YV +G G+
Sbjct: 21  ADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGR 80

Query: 227 AQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQS 286
            ++V      V D E+  GQLLVVP+ FVVA   G +G+E     T            + 
Sbjct: 81  VRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAV---SSYIKD 137

Query: 287 VMNGFSASVVQLALNVNEEFLKFFKENVATSEILIP 322
           V     + V+  + N+ +  ++  K    +  ++ P
Sbjct: 138 VFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 173

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 51  LRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSE 110
           LR+G ++ VP                +VF                + +  + +     SE
Sbjct: 96  LRRGQLLVVPQNFVVAEQGGEQGLEYVVF----------KTHHNAVSSYIKDVFRAIPSE 145

Query: 111 FTGRAYNMNENEAKILAKSQTGVLII 136
               +YN+ +++ + L        ++
Sbjct: 146 VLSNSYNLGQSQVRQLKYQGNSGPLV 171

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 98.6 bits (245), Expect = 5e-24
 Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 23/286 (8%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP 89
               +V    +    +     + +GD+   P G              ++        +  
Sbjct: 103 ARVTIVDEKGRSFIDD-----VGEGDLWYFPSGLPHSIQALEEGAEFLLV-------FDD 150

Query: 90  GEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKL-GQDESEKIPL 148
           G FS          L     E     + + + E   L   +  +   +L G  + + +  
Sbjct: 151 GSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEG 210

Query: 149 PHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSP 208
           P+               P +    K  +  S   +NF       ++  ++ ++  AM   
Sbjct: 211 PNGEVPYPFTYRLLEQEPIESEGGKVYIADS---TNFK--VSKTIASALVTVEPGAMREL 265

Query: 209 TYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAII-AGPEGIEC 267
            +  ++ +  Y + G  +  +   +         +AG +  VP      +   G E +  
Sbjct: 266 HWHPNTHEWQYYISGKARMTVFASDGHARTF-NYQAGDVGYVPFAMGHYVENIGDEPLVF 324

Query: 268 FSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKEN 313
             I      A          +     + VQ  L++ ++F     + 
Sbjct: 325 LEIFKDDHYA---DVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKE 367

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 77.0 bits (189), Expect = 2e-16
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 5/154 (3%)

Query: 171 VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIV 230
           ++K G     T    P  E   L+   ++L   A+    +  ++ +  Y++ GS +  IV
Sbjct: 52  LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIV 108

Query: 231 GLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNG 290
               +  +D +V  G L   P     +I A  EG E   +      +          +  
Sbjct: 109 DEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAH 167

Query: 291 FSASVVQLALNVN-EEFLKFFKENVATSEILIPP 323
               V+     V  EE      +     E  +P 
Sbjct: 168 TPKEVIAANFGVTKEEISNLPGKEKYIFENQLPG 201

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 80.4 bits (198), Expect = 8e-19
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 15/156 (9%)

Query: 173 KAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL 232
           K G +   T    P L  + +  +++ ++  A+  P + + ++ V  + +G    ++VG+
Sbjct: 22  KLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGI 81

Query: 233 NAKL-------------VLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPAL 278
             +                 +E+    + V+P  + V + A        F I        
Sbjct: 82  KEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQRN 141

Query: 279 GKLGGKQSVMNGFSASVVQLALNVN-EEFLKFFKEN 313
              G K +V++   + V +LA   + ++     K  
Sbjct: 142 FLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKSQ 177

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 15/117 (12%)

Query: 30  GVAGMVLPNDQKHSQEEIVLG---------LRKGDVIPVPLGSASWWYNNGSSDVVIVFV 80
               +V   +Q+  Q++             L + D+  +P G           +     +
Sbjct: 74  ANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGI 133

Query: 81  GETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIK 137
                         FL      ++    S+    A+  +  + + L KSQ+    + 
Sbjct: 134 ------NAENNQRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKSQSESYFVD 184

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 77.3 bits (190), Expect = 2e-17
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 4/119 (3%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGETSRAYV 88
            +  +V P+D++             D   +P G+  +  N     D+ I+ +        
Sbjct: 73  AILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQ 132

Query: 89  PGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKIL---AKSQTGVLIIKLGQDESE 144
             EF        Q  L  FS      ++N    E   +    + Q   +I+ +  ++ +
Sbjct: 133 IHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIK 191

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 13/141 (9%)

Query: 177 VTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK- 235
           +  F   +              +     +L P    D+  +  V  GS    +V  + + 
Sbjct: 26  LQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRR 84

Query: 236 ---LVLDSEVEAGQLLVVPRCFVVAII--AGPEGIECFSITTST------RPALGKLGGK 284
               +            +P   +  ++     E +    +             L     +
Sbjct: 85  EYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQ 144

Query: 285 QSVMNGFSASVVQLALNVNEE 305
           QS +  FS  +++ + N   E
Sbjct: 145 QSYLQEFSKHILEASFNSKFE 165

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 72.3 bits (177), Expect = 1e-15
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 4/154 (2%)

Query: 166 PADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSG 225
             +        VT    + +P    +G+S   +         P     + ++  V+KG  
Sbjct: 45  AGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGEL 104

Query: 226 KAQIVGLNAK--LVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPAL-GKL 281
              I+G       +    V AG+  V+PR  +      G           S  P +    
Sbjct: 105 LVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVP 164

Query: 282 GGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA 315
                        V+  AL V    ++  K   A
Sbjct: 165 LTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFA 198

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 8/103 (7%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP 89
            + G++   D  +     V+  R G+   +P G   + +N G ++  +V    +     P
Sbjct: 104 LLVGILGSLDSGNKLYSRVV--RAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN---P 158

Query: 90  GEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTG 132
           G     +     G      +    +A  +     ++L KS+  
Sbjct: 159 GIVF--VPLTLFGSDPPIPTPVLTKALRVEAGVVELL-KSKFA 198

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 36/139 (25%)

Query: 39  DQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRA--YVPGEFSYFL 96
            Q     + +    +GDV+ +P G   W YN G   VV + + +TS     +      F 
Sbjct: 99  QQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFY 158

Query: 97  LTG---------------------------------AQGILGGFSSEFTGRAYNMNENEA 123
           L G                                    +L GFS  F  +++N NE+ A
Sbjct: 159 LAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTA 218

Query: 124 -KILAKSQTGVLIIKLGQD 141
            K+ +       I+ +   
Sbjct: 219 EKLRSPDDERKQIVTVEGG 237

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 35/137 (25%)

Query: 40  QKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY--FLL 97
           +   + + +   R+GD+I VP G A W YNN  + VV V + +T+      +     F L
Sbjct: 97  RPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYL 156

Query: 98  TG------------------------------AQGILGGFSSEFTGRAYNMNENEAKILA 127
            G                                 IL GF+ EF   A+++++  AK L 
Sbjct: 157 AGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQ 216

Query: 128 KSQTGV---LIIKLGQD 141
               G     I+ +   
Sbjct: 217 GENEGEDKGAIVTVKGG 233

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 67.3 bits (164), Expect = 6e-14
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGETSRAYV 88
            +  +V  +D+          L+ GD + VP G+  +  N  +  ++ ++ +        
Sbjct: 71  AILTLVNNDDRD------SYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNK-- 122

Query: 89  PGEFSYFLLTG---AQGILGGFSSEFTGRAYNMNENEA-KILAKSQTGVLIIKLGQDESE 144
           PG F  F L+     Q  L GFS      +Y+    E  K+L   + G    +    ES 
Sbjct: 123 PGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQESV 182

Query: 145 KIPLPHQ 151
            + +  +
Sbjct: 183 IVEISKK 189

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 177 VTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL 236
           +  F   +                  N +L P +  D+  +  ++ G+    +V  + + 
Sbjct: 24  LQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHA-DADYLIVILNGTAILTLVNNDDRD 82

Query: 237 VLDSEVEAGQLLVVPRCFVVAIIAGPEG----IECFSITTST-----RPALGKLGGKQSV 287
             +  +++G  L VP      ++         +   +I  +         L     +QS 
Sbjct: 83  SYN--LQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSY 140

Query: 288 MNGFSASVVQLALNVNEE 305
           + GFS ++++ + +   E
Sbjct: 141 LQGFSKNILEASYDTKFE 158

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 60.7 bits (147), Expect = 7e-12
 Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 13/157 (8%)

Query: 177 VTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL 236
           +  F                      N +L P ++ DS  +  V++G     +V  + + 
Sbjct: 25  LQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHS-DSDLLVLVLEGQAILVLVNPDGRD 83

Query: 237 VLDSEVEAGQLLVVPRCFVVAII--AGPEG--IECFSITTST-----RPALGKLGGKQSV 287
               +++ G  + +       +I     +   I  F+IT           L       S 
Sbjct: 84  T--YKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSY 141

Query: 288 MNGFSASVVQLALNVN-EEFLKFFKENVATSEILIPP 323
           ++ FS + ++ + +   +E  +   +      I+  P
Sbjct: 142 LSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP 178

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 58.4 bits (141), Expect = 5e-11
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 13/114 (11%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGETSRAYV 88
            +  +V P+ +   +      L +GD I +  G+  +  N  ++ ++ I+    T R   
Sbjct: 72  AILVLVNPDGRDTYK------LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRR-- 123

Query: 89  PGEFSYFLLTGAQG---ILGGFSSEFTGRAYNMNENEA-KILAKSQTGVLIIKL 138
           PG    F L+  +     L  FS  F   +Y+   +E  + L + +   +I+K+
Sbjct: 124 PGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM 177

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 60.3 bits (146), Expect = 9e-12
 Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 13/135 (9%)

Query: 192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLN------AKLVLDSEVEAG 245
            +  + ++++  A+  P Y + ++ +  V +G    ++VG              +E+   
Sbjct: 19  NVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKD 78

Query: 246 QLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMN-----GFSASVVQLA 299
            + V+P  + VAI A        F I  +        G   +V++          V+ L 
Sbjct: 79  DVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLT 138

Query: 300 LNVN-EEFLKFFKEN 313
            + + +E +K   + 
Sbjct: 139 FSGSGDEVMKLINKQ 153

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 13/122 (10%)

Query: 23  IIIPCELGVAGMVLPNDQKHSQEEIVL--GLRKGDVIPVPLGSASWWYNNGSSDVVIVFV 80
           +++        +V P   K + E       L K DV  +P           + +     +
Sbjct: 45  LVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGFGI 104

Query: 81  GETSRAYVPGEFSYFLLTGAQGILG-----GFSSEFTGRAYNMNENEAKILAKSQTGVLI 135
                          L      ++          +  G  ++ + +E   L   Q+G   
Sbjct: 105 ------NANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYF 158

Query: 136 IK 137
           + 
Sbjct: 159 VD 160

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 58.7 bits (142), Expect = 4e-11
 Identities = 20/139 (14%), Positives = 49/139 (35%), Gaps = 13/139 (9%)

Query: 177 VTSFTGSNFPFLEQVG-LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK 235
           +        P LE +        +   N +L P +  D+  + +V+ G     +V  + +
Sbjct: 27  LLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHA-DADFLLFVLSGRAILTLVNNDDR 85

Query: 236 LVLDSEVEAGQLLVVPRCFVVAIIAGPEG----IECFSITTST-----RPALGKLGGKQS 286
              +  +  G    +P      ++   +     +   +I  +         L     +QS
Sbjct: 86  DSYN--LHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQS 143

Query: 287 VMNGFSASVVQLALNVNEE 305
            + GFS ++++ + +   E
Sbjct: 144 YLQGFSHNILETSFHSEFE 162

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 30  GVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSD-VVIVFVGETSRAYV 88
            +  +V  +D+          L  GD   +P G+  +  N      + ++++        
Sbjct: 75  AILTLVNNDDRDSYN------LHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNK-- 126

Query: 89  PGEFSYFLLTGAQG---ILGGFSSEFTGRAYNMNENEAK 124
           PG +  F L+  Q     L GFS      +++    E  
Sbjct: 127 PGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEIN 165

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 19/222 (8%), Positives = 50/222 (22%), Gaps = 19/222 (8%)

Query: 51  LRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSE 110
           L  GD   +P G+   +        ++ +        + G  ++                
Sbjct: 85  LISGDYANIPAGTPHSYRMQSHRTRLVSYT-------MKGNVAHLYSVIGNPYDHAEHPP 137

Query: 111 FTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFC 170
           +         +  +    +    ++       +    L       +  V           
Sbjct: 138 YASE----EVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDR 193

Query: 171 VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIV 230
           +     +     +      Q        +      +   Y     + FY ++G       
Sbjct: 194 LLTGDQLHRIVAAQKNTDGQ--FIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTD 251

Query: 231 GLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITT 272
           G       + ++  G  L VP   V +        +   +  
Sbjct: 252 G------QEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLV 287

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 29/235 (12%), Positives = 58/235 (24%), Gaps = 27/235 (11%)

Query: 51  LRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSE 110
           L   D +  P G+        S    I   G           +  L          F   
Sbjct: 128 LGANDFVLTPNGTWHEHGILESGTECIWQDGL------DIPLTNCLEAN-------FYEV 174

Query: 111 FTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPL---PHQHGNANLMVNNFANFPA 167
                   +              L+ +L + +    PL     +      ++N       
Sbjct: 175 HPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEA-LLNYAKASDG 233

Query: 168 DFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKA 227
                  G++  +T         + +  ++  L             +  ++ V KG G +
Sbjct: 234 S---PYDGLILRYTNPQTGGHPMLTMGASMQMLRPGEHTKAHRHTGN-VIYNVAKGQGYS 289

Query: 228 QIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLG 282
            +     K     +     +  VP           E  +    + +  P + KLG
Sbjct: 290 IV---GGKRF---DWSEHDIFCVPAWTWHEHCNTQERDDACLFSFNDFPVMEKLG 338

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 33/272 (12%), Positives = 69/272 (25%), Gaps = 48/272 (17%)

Query: 38  NDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV----------------- 80
                +Q+  VL    GD   VP      +        +   +                 
Sbjct: 85  QSGNETQQTRVLS--SGDYGSVPRNVTHTFQIQDPDTEMTGVIVPGGFEDLFYYLGTNAT 142

Query: 81  GETSRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQ 140
             T   Y+P        TG        S+  +   Y       +    + T         
Sbjct: 143 DTTHTPYIPSSSDSSSTTGP--DSSTISTLQSFDVYAELSFTPRTDTVNGTAPANTVWHT 200

Query: 141 DESE---KIPLPHQHGNANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTI 197
             +        P+   N        + +             +   +N+       LS   
Sbjct: 201 GANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQ-DTNYT------LSTIS 253

Query: 198 LKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR----- 252
           +    + +  PT++      F V +G    QI          +E+ +G +  +P      
Sbjct: 254 MSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYA-----ATELGSGDVAFIPGGVEFK 308

Query: 253 -------CFVVAIIAGPEGIECFSITTSTRPA 277
                    V+ + +G +G++   +      +
Sbjct: 309 YYSEAYFSKVLFVSSGSDGLDQNLVNGGEEWS 340

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 31/237 (13%), Positives = 59/237 (24%), Gaps = 29/237 (12%)

Query: 51  LRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSYFLLTGAQGILGGFSSE 110
           + +GD++  P        N+    +  +   +                       GF   
Sbjct: 130 MSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLD------IPFSQQMD--------VGFFEF 175

Query: 111 FTGRAYNMNENEAKILAK-SQTGVLIIKLGQDESEKIPLPH----QHGNANLMVNNFANF 165
            + R  +          +      L    G   +   P+          A        + 
Sbjct: 176 GSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDE 235

Query: 166 PADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSG 225
                V        +            L C   +L A    +         VF V +G+G
Sbjct: 236 GQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETAT-RNEVGSTVFQVFEGAG 294

Query: 226 KAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLG 282
              +   N +     ++E G + VVP     ++ A     +      S  P +  L 
Sbjct: 295 AVVM---NGETT---KLEKGDMFVVPSWVPWSLQAET---QFDLFRFSDAPIMEALS 342

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.98
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.98
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.97
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.97
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.97
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.96
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.96
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.96
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.96
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.95
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.95
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.95
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.94
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.94
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	99.94
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.93
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	99.93
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	99.92
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	99.9
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.89
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	99.86
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.77
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.75
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.72
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.7
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.69
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.69
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.6
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.57
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.19
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.1
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.1
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.08
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	98.98
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	98.98
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.94
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.92
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	98.92
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	98.92
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.92
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	98.88
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	98.85
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.85
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	98.82
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	98.8
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.7
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.61
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.58
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.57
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.57
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.57
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.56
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.53
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.51
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.5
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.47
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.4
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.37
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.36
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.32
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.29
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.29
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.19
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.14
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.72
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	97.62
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	97.51
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.33
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	97.1
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	96.86
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	96.8
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.23
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	96.11
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	96.1
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	96.09
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	96.01
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	95.88
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	95.86
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	95.85
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	95.77
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	95.75
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	95.71
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	95.67
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	95.55
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	95.52
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	95.51
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	95.39
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	95.35
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	95.32
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	95.27
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	94.42
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	92.17
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	91.89
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	90.83
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	89.81
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	88.8
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	87.26
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	87.19
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	86.99
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	86.66
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	86.54
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	86.39
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	85.06
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	84.39
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	83.93
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	83.7
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	82.16
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	81.95
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	81.88
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	81.66
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	81.54
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	80.21
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	80.16

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.9e-53  Score=404.29  Aligned_cols=288  Identities=15%  Similarity=0.145  Sum_probs=243.2

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      |++.++..|||+.+.||.||++|+ |++++|++++     +.++.+|++||+|+||+|++||++|. +++++++.+++..
T Consensus        79 L~pga~~~pH~H~~ae~~yVl~G~-~~vt~Vd~~G-----~~~~~~l~~GDv~~~P~G~~H~i~n~-~dg~e~l~vf~~~  151 (372)
T d1j58a_          79 LKPGAIRELHWHKEAEWAYMIYGS-ARVTIVDEKG-----RSFIDDVGEGDLWYFPSGLPHSIQAL-EEGAEFLLVFDDG  151 (372)
T ss_dssp             ECTTCEEEEEEESSCEEEEEEEEE-EEEEEECTTS-----CEEEEEEETTEEEEECTTCCEEEEEE-EEEEEEEEEESCT
T ss_pred             ECCCcCcCCcccCcccEEEEEeCE-EEEEEEeCCC-----cEEEEEeccCCEEEECCCCEEEEEeC-CCCcEEEEEECCC
Confidence            789999999987778999999999 9999999986     66678999999999999999999996 4578888888644


Q ss_pred             CCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcC-CCCcccCCCC-CCCceeeee
Q 020545           85 RAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDES-EKIPLPHQHG-NANLMVNNF  162 (325)
Q Consensus        85 ~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~-~~~~~~~p~~-~~~~~~~nl  162 (325)
                         ++.....|.+   .++|++||.|||++||+++++++++|++.|.  +|+....++. .......+.+ ....+.||+
T Consensus       152 ---~~~~~~~f~~---~~~~~~~p~evLa~af~v~~~~~~~i~~~e~--~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l  223 (372)
T d1j58a_         152 ---SFSENSTFQL---TDWLAHTPKEVIAANFGVTKEEISNLPGKEK--YIFENQLPGSLKDDIVEGPNGEVPYPFTYRL  223 (372)
T ss_dssp             ---TCCGGGEEEH---HHHHHTSCHHHHHHHHTCCTGGGTTSCSSCC--SEECCCCCCCHHHHCCCCTTCCCSSCSEEEG
T ss_pred             ---Ccccccceee---ccccccCCHHHHHHhhCCCHHHHhhcccccc--ccccccCCCcchhhhccCCCCCCCCcceeec
Confidence               3444445543   4999999999999999999999999998874  4665433211 0000111211 245789999


Q ss_pred             cCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEe
Q 020545          163 ANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEV  242 (325)
Q Consensus       163 ~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l  242 (325)
                      .+++| +.+ .||+++++++.+||+++  +|++++++|+||+|++|||||+|+||.||++|+++++|++++|+ ..+.++
T Consensus       224 ~~q~P-~~~-~gG~~~~~d~~~fp~~~--~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~-~~t~~l  298 (372)
T d1j58a_         224 LEQEP-IES-EGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGH-ARTFNY  298 (372)
T ss_dssp             GGSCC-EEC-SSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTE-EEEEEE
T ss_pred             cccCC-ccc-CCccEEEeccccCCccC--ceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCc-eEEEEe
Confidence            99888 544 68999999999999998  57999999999999999999999999999999999999999875 556789


Q ss_pred             cCccEEEECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccC
Q 020545          243 EAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA  315 (325)
Q Consensus       243 ~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~  315 (325)
                      ++||+++||+|++|++.| |+++++++.++++++++...+   +++|..+|++||+++|+++++++++|+++++
T Consensus       299 ~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~~~i~~---~~~l~~~P~~vv~~~~~~~~e~~~~l~~~k~  369 (372)
T d1j58a_         299 QAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSL---NQWLAMLPETFVQAHLDLGKDFTDVLSKEKH  369 (372)
T ss_dssp             ESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEH---HHHHHTSCHHHHHHHHTCCHHHHTTCCSSCC
T ss_pred             cCCcEEEECCCCeEEEEECCCCCEEEEEEECCCCcceeeH---HHHhhhCCHHHHHHHhCcCHHHHHHHHhcCC
Confidence            999999999999999665 889999999999999887666   5899999999999999999999999987664

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=2.1e-43  Score=305.66  Aligned_cols=168  Identities=30%  Similarity=0.512  Sum_probs=158.3

Q ss_pred             CceeeeecC-CCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC
Q 020545          156 NLMVNNFAN-FPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA  234 (325)
Q Consensus       156 ~~~~~nl~~-~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g  234 (325)
                      .+.++|+.+ .+||+++++||+++.+++.+||+|+++|||+++++|+||||++|||||+|+||.||++|++++++++++|
T Consensus         4 ~~~~~ni~~~~~~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g   83 (174)
T d1fxza2           4 MRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNG   83 (174)
T ss_dssp             CCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTS
T ss_pred             eehhhccCCCCCCCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCC
Confidence            356899976 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhcc
Q 020545          235 KLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENV  314 (325)
Q Consensus       235 ~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~  314 (325)
                      +++++++|++|||++||+|++||+.|++++++++.+++++++..++++|.+++|++||++||+++|+++.+++++|+++|
T Consensus        84 ~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~~~~~v~~~~~~~~~~~~lag~~s~l~~~~~~vl~~af~v~~eei~~lk~~q  163 (174)
T d1fxza2          84 ERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNN  163 (174)
T ss_dssp             CEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSSSCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred             ceeEEEEEcCCcEEEECCCCEEEEEeCCCCeEEEEEEccCCCCcccccchhhhhhcCCHHHHHHHHCcCHHHHHHHHhcC
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEecCCC
Q 020545          315 ATSEILIPPK  324 (325)
Q Consensus       315 ~~~~i~~~p~  324 (325)
                      ++. +|.||+
T Consensus       164 ~~~-~~~~P~  172 (174)
T d1fxza2         164 PFK-FLVPPQ  172 (174)
T ss_dssp             CCS-SEECCC
T ss_pred             Cce-EeCCCC
Confidence            765 555564

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=2.4e-42  Score=298.52  Aligned_cols=164  Identities=29%  Similarity=0.476  Sum_probs=154.7

Q ss_pred             CceeeeecC-CCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC
Q 020545          156 NLMVNNFAN-FPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA  234 (325)
Q Consensus       156 ~~~~~nl~~-~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g  234 (325)
                      .+.++||.. .+||++|++||+++.+++++||+|+++|||+++++|+||||++|||||+|+||.||++|+++++|+++++
T Consensus         9 ~~~r~ni~~p~~~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~   88 (173)
T d1od5a2           9 MKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQG   88 (173)
T ss_dssp             CCCEEECCSGGGCSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTS
T ss_pred             eeeecCCCCcccCCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCC
Confidence            367899987 8899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhcc
Q 020545          235 KLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENV  314 (325)
Q Consensus       235 ~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~  314 (325)
                      +++++.+|++|||++||+|++||++|++++++++.++++.++....+   +++|++||++||++||+++++++++|+.+|
T Consensus        89 ~~~~~~~l~~Gdv~~iP~G~~h~~~n~~~~~~~v~~~~~~~~~~~~~---~s~l~~~p~evl~~af~v~~e~v~~lk~~~  165 (173)
T d1od5a2          89 NAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYI---KDVFRAIPSEVLSNSYNLGQSQVRQLKYQG  165 (173)
T ss_dssp             CEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEEH---HHHHHHSCHHHHHHHHTCCHHHHHHHHHSS
T ss_pred             ceEEeEEecCCcEEEECCCCEEEEEcCCCceEEEEeecCCchhhhhH---HHHHHhCCHHHHHHHhCcCHHHHHHHHhcC
Confidence            89999999999999999999999999888999999999988876666   699999999999999999999999999999


Q ss_pred             CCceEecC
Q 020545          315 ATSEILIP  322 (325)
Q Consensus       315 ~~~~i~~~  322 (325)
                      ++..|++|
T Consensus       166 ~~~~i~~P  173 (173)
T d1od5a2         166 NSGPLVNP  173 (173)
T ss_dssp             CSSSEECC
T ss_pred             CCCcccCc
Confidence            88877765

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=2.4e-39  Score=282.65  Aligned_cols=165  Identities=16%  Similarity=0.295  Sum_probs=142.2

Q ss_pred             CCceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC
Q 020545          155 ANLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA  234 (325)
Q Consensus       155 ~~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g  234 (325)
                      .+..+|||.+.+|++.| ++|++++++++++|+|+|+|+++++++|+||||++||||++|++|+||++|+|+++|++|+|
T Consensus         5 ~~~~pfnl~~~~p~~~n-~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~   83 (185)
T d1uika2           5 SEDKPFNLRSRDPIYSN-KLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKE   83 (185)
T ss_dssp             CSSSCEETTSSCCSEES-SSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC--
T ss_pred             cCCCccccccCCCceeC-CCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCc
Confidence            35679999999999886 57999999999999999999999999999999999999999999999999999999999975


Q ss_pred             c-------------eEEeEEecCccEEEECCccEEEEEcCCC-CEEEEEEeCCCCCceeeecC-ccccccCCCHHHHHHH
Q 020545          235 K-------------LVLDSEVEAGQLLVVPRCFVVAIIAGPE-GIECFSITTSTRPALGKLGG-KQSVMNGFSASVVQLA  299 (325)
Q Consensus       235 ~-------------~~~~~~l~~Gdv~vvP~G~~h~~~~g~~-~~~~~~~~~s~~p~~~~laG-~~svl~~~~~evla~a  299 (325)
                      .             ++++++|++|||++||+|++||++|.++ .+.++.+.+..+. .++++| .+++|++||+++|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d~~~v~~~~~~~~~~-~~f~ag~~~~vl~~~~~evLa~a  162 (185)
T d1uika2          84 QQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQ-RNFLAGSKDNVISQIPSQVQELA  162 (185)
T ss_dssp             ----------CBCCEEEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEETCTTCC-EEESSSSSSBGGGGSCHHHHHHH
T ss_pred             cchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCCccEEEEEEcCCCCc-ccccccccccccccCCHHHHHHH
Confidence            3             5788899999999999999999888433 3444444444444 455554 6899999999999999


Q ss_pred             cCCCHHHHHHhhhccCCceEec
Q 020545          300 LNVNEEFLKFFKENVATSEILI  321 (325)
Q Consensus       300 f~v~~~~v~~l~~~~~~~~i~~  321 (325)
                      |+++.+++++|+++|+++.|+.
T Consensus       163 F~v~~~~~~kl~~~q~e~~i~~  184 (185)
T d1uika2         163 FPGSAKDIENLIKSQSESYFVD  184 (185)
T ss_dssp             SSSCHHHHHHHHHHCCSCSEEE
T ss_pred             hCCCHHHHHHHHhcCCceEEec
Confidence            9999999999999999887763

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=8.6e-35  Score=256.24  Aligned_cols=158  Identities=16%  Similarity=0.246  Sum_probs=141.5

Q ss_pred             CceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeC--C
Q 020545          156 NLMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL--N  233 (325)
Q Consensus       156 ~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p--~  233 (325)
                      ..+.|.-...+.+.+++.||+++.+++.+||+|+++|||++|++|.||||++|||||+|+||.||++|+++++++++  .
T Consensus        35 ~~f~~~~l~~~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~  114 (201)
T d2et1a1          35 DFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDS  114 (201)
T ss_dssp             CTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGG
T ss_pred             cceeecccccCCCccCCCCcEEEEeehhcCccccccceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCC
Confidence            34666656677788889999999999999999999999999999999999999999999999999999999999985  3


Q ss_pred             CceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCCCceeeecCccccc---cCCCHHHHHHHcCCCHHHHHH
Q 020545          234 AKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTRPALGKLGGKQSVM---NGFSASVVQLALNVNEEFLKF  309 (325)
Q Consensus       234 g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p~~~~laG~~svl---~~~~~evla~af~v~~~~v~~  309 (325)
                      ++++++.+|++||+++||+|++||+.| |++++.++.++++++|+.+.++  .+++   .+||.|||++||+++++++++
T Consensus       115 ~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~~pg~~~~~--~~~f~~~~~~p~eVLa~af~i~~~~v~k  192 (201)
T d2et1a1         115 GNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVP--LTLFGSDPPIPTPVLTKALRVEAGVVEL  192 (201)
T ss_dssp             TTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCCEEHH--HHHHHCSSCCCHHHHHHHHTSCHHHHHH
T ss_pred             CceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecCCCCcceehh--hhhhccCCCCCHHHHHHHhCCCHHHHHH
Confidence            568899999999999999999999776 8888999999999999988775  3444   459999999999999999999


Q ss_pred             hhhccC
Q 020545          310 FKENVA  315 (325)
Q Consensus       310 l~~~~~  315 (325)
                      ||++-.
T Consensus       193 Lks~f~  198 (201)
T d2et1a1         193 LKSKFA  198 (201)
T ss_dssp             HHHTTT
T ss_pred             HHhhcc
Confidence            987643

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.98  E-value=2.5e-32  Score=245.23  Aligned_cols=142  Identities=25%  Similarity=0.360  Sum_probs=125.8

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC-----------------CCcceEEEEeeCCcEEEeCCCCeEEE
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK-----------------HSQEEIVLGLRKGDVIPVPLGSASWW   67 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~-----------------~~~~~~~~~l~~GDv~~vP~G~~~~~   67 (325)
                      +.+++|++|||.+|+.|.||++|+ |++++|.|+|++                 .+.++++.+|++||||+||||++||+
T Consensus        46 I~p~gL~lP~y~~a~~i~yV~qG~-G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~  124 (239)
T d1fxza1          46 LNRNALRRPSYTNGPQEIYIQQGK-GIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWM  124 (239)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEECC-EEEEEECTTCCCC------------------CCCCEEEECTTEEEEECTTCEEEE
T ss_pred             eccCceecceecCCCeEEEEEeCE-EEEEEecCCChhhhcccccccccccccccchhhhhhhccccCCEEEecCCceEEE
Confidence            467999999999999999999999 999999998842                 26678889999999999999999999


Q ss_pred             EecCCCCEEEEEEeecCCCCC--CCcceeeeeccc------------------------------cccccCCChhHHhhh
Q 020545           68 YNNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGA------------------------------QGILGGFSSEFTGRA  115 (325)
Q Consensus        68 ~N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~------------------------------~s~l~~f~~~vLa~a  115 (325)
                      ||+|+++|++++++|++|..|  +..++.|||+|+                              .|+|++|++++||+|
T Consensus       125 ~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~gFs~~~La~A  204 (239)
T d1fxza1         125 YNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHA  204 (239)
T ss_dssp             EECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC-------------------CCCGGGGSCHHHHHHH
T ss_pred             EeCCCCcEEEEEEeccccccccccccceeeeccCCcccccccccccccccccccccccccccccCCCcccccCHHHHHHH
Confidence            999999999999999998877  555899999997                              389999999999999


Q ss_pred             cCCCHHHHHHHhccc---CceeEEEecCCcCCCCcccCC
Q 020545          116 YNMNENEAKILAKSQ---TGVLIIKLGQDESEKIPLPHQ  151 (325)
Q Consensus       116 f~v~~~~~~~l~~~q---~~~~Iv~~~~~~~~~~~~~~p  151 (325)
                      |+++.++++||++.+   +.+.|||++.    ++.+++|
T Consensus       205 fnv~~e~~~klq~~~~~~~rG~IVrv~~----~l~~~~P  239 (239)
T d1fxza1         205 FSVDKQIAKNLQGENEGEDKGAIVTVKG----GLSVIKP  239 (239)
T ss_dssp             HTCCHHHHHHHSCC-----CCSEEECSS----CCCCCCC
T ss_pred             HCcCHHHHHHHhcccccccCCCEEEEcC----CccccCC
Confidence            999999999999765   3478999988    7777665

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.98  E-value=2.1e-32  Score=246.54  Aligned_cols=142  Identities=23%  Similarity=0.380  Sum_probs=127.9

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCC--------------------CCcceEEEEeeCCcEEEeCCCCe
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQK--------------------HSQEEIVLGLRKGDVIPVPLGSA   64 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~--------------------~~~~~~~~~l~~GDv~~vP~G~~   64 (325)
                      +.+++|++|||.+|+.|+||++|+ |++|+|.|+|++                    .|.++++++|++||||+||||++
T Consensus        46 I~p~gL~lP~ys~a~~i~yV~qG~-G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~  124 (245)
T d1od5a1          46 LNRNGLHLPSYSPYPQMIIVVQGK-GAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVP  124 (245)
T ss_dssp             ECTTEEEEEEECSSCEEEEEEECE-EEEEECCTTCCCCEEECC---------------EEESCEEEEETTEEEEECTTCC
T ss_pred             EcCCccccccccCCCeEEEEEeCE-EEEEEEeCCChhhhcchhhcccccccccccccccceeeeecccCCCEEEECCCce
Confidence            568999999999999999999999 999999999842                    25577788999999999999999


Q ss_pred             EEEEecCCCCEEEEEEeecCCCCC--CCcceeeeeccc---------------------------------cccccCCCh
Q 020545           65 SWWYNNGSSDVVIVFVGETSRAYV--PGEFSYFLLTGA---------------------------------QGILGGFSS  109 (325)
Q Consensus        65 ~~~~N~g~~~l~~~~~~~~~~~~~--p~~~~~f~laG~---------------------------------~s~l~~f~~  109 (325)
                      ||+||+||++|++++++|++|..|  ++.++.|||+|+                                 +|+|++|++
T Consensus       125 ~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~nif~gF~~  204 (245)
T d1od5a1         125 YWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSK  204 (245)
T ss_dssp             EEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCTTTTC---------------------CCCCTTTTSCH
T ss_pred             EEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCcccccchhcccchhhhhcccccccccccccccCCCeeecCCH
Confidence            999999999999999999988775  777999999997                                 289999999


Q ss_pred             hHHhhhcCCCHHHHHHHhcc-cCceeEEEecCCcCCCCcccCC
Q 020545          110 EFTGRAYNMNENEAKILAKS-QTGVLIIKLGQDESEKIPLPHQ  151 (325)
Q Consensus       110 ~vLa~af~v~~~~~~~l~~~-q~~~~Iv~~~~~~~~~~~~~~p  151 (325)
                      ++||+||+|+.++++||++. +..+.|||++.    ++.++.|
T Consensus       205 ~~La~Af~v~~e~~~klq~~~~~rG~IVrv~~----~l~~~~P  243 (245)
T d1od5a1         205 HFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG----GLSVISP  243 (245)
T ss_dssp             HHHHHHTTCCHHHHHHTTCTTCCSCSEEECSS----CCCCCCS
T ss_pred             HHHHHHHCCCHHHHHHHhCcccCCCcEEEEcC----CccccCC
Confidence            99999999999999999964 45578999998    7877777

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.97  E-value=1e-31  Score=229.21  Aligned_cols=143  Identities=16%  Similarity=0.254  Sum_probs=119.8

Q ss_pred             eccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCce------EEeEEec
Q 020545          170 CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKL------VLDSEVE  243 (325)
Q Consensus       170 ~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~------~~~~~l~  243 (325)
                      .| +-|.+++++.      +++|+++++++|+||+|++|||||+|++|+||++|+++++|++|+|++      +++.+|+
T Consensus         4 ~n-~fg~~~~~~~------n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~   76 (162)
T d2phla2           4 GN-EFGNLTERTD------NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELS   76 (162)
T ss_dssp             EE-TTEEEEEEEE------TTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEE
T ss_pred             cc-ccCceeecCC------CCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeec
Confidence            44 4588888874      557999999999999999999999999999999999999999998754      7889999


Q ss_pred             CccEEEECCccEEEEEcCCCCEEEEEEe-CCCCCceeeecCccc------cccCCCHHHHHHHcCCCHHHHHHhhhccCC
Q 020545          244 AGQLLVVPRCFVVAIIAGPEGIECFSIT-TSTRPALGKLGGKQS------VMNGFSASVVQLALNVNEEFLKFFKENVAT  316 (325)
Q Consensus       244 ~Gdv~vvP~G~~h~~~~g~~~~~~~~~~-~s~~p~~~~laG~~s------vl~~~~~evla~af~v~~~~v~~l~~~~~~  316 (325)
                      +|||++||+|++||+.|.+ +.+++.+. ++.+...+++||..+      ++++||++||++||+++.+++++|+++|++
T Consensus        77 ~Gdv~vvP~G~~~~~~n~~-~~~~v~~~~~~~~~~~~flaG~~~sv~~~~~~~~~~~evL~~aF~v~~eevekl~~~q~e  155 (162)
T d2phla2          77 KDDVFVIPAAYPVAIKATS-NVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSG  155 (162)
T ss_dssp             TTCEEEECTTCCEEEEESS-SEEEEEEEESCTTCCEEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTCCC
T ss_pred             CCcEEEECCCCEEEEEeCC-CceEEEEEecCCCCcceeecCccccchhhhcccCCCHHHHHHHhCCCHHHHHHHHhhCCc
Confidence            9999999999999988854 34555443 233444678998643      347799999999999999999999999999


Q ss_pred             ceEe
Q 020545          317 SEIL  320 (325)
Q Consensus       317 ~~i~  320 (325)
                      +.|+
T Consensus       156 ~~~v  159 (162)
T d2phla2         156 SYFV  159 (162)
T ss_dssp             CSEE
T ss_pred             eEEE
Confidence            8776

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.97  E-value=1.3e-30  Score=225.69  Aligned_cols=164  Identities=14%  Similarity=0.136  Sum_probs=133.8

Q ss_pred             CceeeeecCCCCCeeccCCeEEEEEcC--CCCcccccc-cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeC
Q 020545          156 NLMVNNFANFPADFCVKKAGMVTSFTG--SNFPFLEQV-GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL  232 (325)
Q Consensus       156 ~~~~~nl~~~~p~~~~~~gG~~~~~~~--~~~p~L~~~-gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p  232 (325)
                      +++.|+..+.++.+.+ ++|+++.++.  ++.+.|+++ ++++.+++|+||||++||| ++|+||.||++|+|+++|+++
T Consensus         2 npy~F~~~~~~~~~~~-~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~v~~v~~   79 (178)
T d1dgwa_           2 NPYLFRSNKFLTLFKN-QHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLLVLVLEGQAILVLVNP   79 (178)
T ss_dssp             CTTEECGGGEEEEEEE-TTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEE-ESSEEEEEEEESEEEEEEEET
T ss_pred             CCeeccccccccceEC-CCCcEEEecccCCcchhccCccceEEEEEEecCCccccccc-CCCCEEEEEEEeEEEEEEecC
Confidence            4678888777777765 6899999874  456788887 5999999999999999996 999999999999999999999


Q ss_pred             CCceEEeEEecCccEEEECCccEEEEEc-CC-CCEEEEEEeCCCC----CceeeecC---ccccccCCCHHHHHHHcCCC
Q 020545          233 NAKLVLDSEVEAGQLLVVPRCFVVAIIA-GP-EGIECFSITTSTR----PALGKLGG---KQSVMNGFSASVVQLALNVN  303 (325)
Q Consensus       233 ~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~-~~~~~~~~~~s~~----p~~~~laG---~~svl~~~~~evla~af~v~  303 (325)
                      ++..  +++|++|||++||+|++||+.| ++ ++++++.++...+    ...++++|   ..|+|++||++||++||+++
T Consensus        80 ~~~~--~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~~svl~~~~~evL~~aF~v~  157 (178)
T d1dgwa_          80 DGRD--TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSP  157 (178)
T ss_dssp             TEEE--EEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSC
T ss_pred             CceE--EEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCcccHHHhCCHHHHHHHhCCC
Confidence            8754  5579999999999999999766 44 6788777764322    23344544   46899999999999999999


Q ss_pred             HHHHHHhhhcc-CCceEecCC
Q 020545          304 EEFLKFFKENV-ATSEILIPP  323 (325)
Q Consensus       304 ~~~v~~l~~~~-~~~~i~~~p  323 (325)
                      .+++++|+..+ +++.|+..|
T Consensus       158 ~e~~~kl~~~~~~~g~Iv~~P  178 (178)
T d1dgwa_         158 YDEIEQTLLQEEQEGVIVKMP  178 (178)
T ss_dssp             HHHHHHHTTSCCSSSSEEECC
T ss_pred             HHHHHHHHhcccCCCcEEeCc
Confidence            99999986555 455677766

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.97  E-value=1.9e-30  Score=228.39  Aligned_cols=167  Identities=14%  Similarity=0.120  Sum_probs=136.4

Q ss_pred             CceeeeecCC-CCCeeccCCeEEEEEcC--CCCcccccc-cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEe
Q 020545          156 NLMVNNFANF-PADFCVKKAGMVTSFTG--SNFPFLEQV-GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVG  231 (325)
Q Consensus       156 ~~~~~nl~~~-~p~~~~~~gG~~~~~~~--~~~p~L~~~-gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~  231 (325)
                      +++.|...+. ++.+. +++|++++++.  ++.+.|+++ ++++++++|+|+||++||| +||++|+||++|+|+++|++
T Consensus         2 np~~f~~~~~f~~~~~-~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~-~nA~~i~yV~~G~G~v~~v~   79 (200)
T d2phla1           2 NPFYFNSDNSWNTLFK-NQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQ-ADAELLLVVRSGSAILVLVK   79 (200)
T ss_dssp             CTTEECGGGTEEEEEE-ETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEE-ESEEEEEEEEESEEEEEEEE
T ss_pred             CCeecCchhcccceeE-CCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeec-CCCCEEEEEEeeeEEEEEEE
Confidence            4566765543 55555 46899999986  456788887 6899999999999999999 69999999999999999999


Q ss_pred             CCCceEE----eEEecCccEEEECCccEEEEEc-C-CCCEEEEEEeCCC---CCceeeecCc---cccccCCCHHHHHHH
Q 020545          232 LNAKLVL----DSEVEAGQLLVVPRCFVVAIIA-G-PEGIECFSITTST---RPALGKLGGK---QSVMNGFSASVVQLA  299 (325)
Q Consensus       232 p~g~~~~----~~~l~~Gdv~vvP~G~~h~~~~-g-~~~~~~~~~~~s~---~p~~~~laG~---~svl~~~~~evla~a  299 (325)
                      |+|...+    ..+|++|||++||+|++||++| + +++++++.+.++.   ++..++|||.   .|+|++|++++|++|
T Consensus        80 p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~~f~~evLa~a  159 (200)
T d2phla1          80 PDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEAS  159 (200)
T ss_dssp             TTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGGSCHHHHHHH
T ss_pred             CCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhHcCCHHHHHHH
Confidence            9997654    3479999999999999999876 5 4679888776443   3567889985   489999999999999


Q ss_pred             cCCCHHHHHHhhhc---cCCceEecCCC
Q 020545          300 LNVNEEFLKFFKEN---VATSEILIPPK  324 (325)
Q Consensus       300 f~v~~~~v~~l~~~---~~~~~i~~~p~  324 (325)
                      |+++.+++++|+..   |+.+.|+..++
T Consensus       160 F~v~~e~~~kl~~~~~~q~~g~Iv~~~~  187 (200)
T d2phla1         160 FNSKFEEINRVLFEEEGQQEGVIVNIDS  187 (200)
T ss_dssp             HTSCHHHHHHHHTCSTTCBSSSEEECCT
T ss_pred             cCCCHHHHHHHHhccccccCCceEEcCH
Confidence            99999999999743   44556776543

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.96  E-value=7.7e-31  Score=230.95  Aligned_cols=137  Identities=15%  Similarity=0.183  Sum_probs=114.6

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~~   83 (325)
                      |.++++++|||++|++|.||++|+ |++++|+|+|.+.-.+++..+|++||||+||+|++||++|.++ ++|+++++.++
T Consensus        49 i~P~~l~lP~~~nA~~i~yV~~G~-G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~  127 (200)
T d2phla1          49 SKPETLLLPQQADAELLLVVRSGS-AILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMP  127 (200)
T ss_dssp             ECSSEEEEEEEESEEEEEEEEESE-EEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEE
T ss_pred             ecCCceeeeecCCCCEEEEEEeee-EEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecC
Confidence            578999999999999999999999 9999999997211111222379999999999999999999875 58999999987


Q ss_pred             CCCCCCCcceeeeeccc---cccccCCChhHHhhhcCCCHHHHHHHhcc---cCceeEEEecCCcCCC
Q 020545           84 SRAYVPGEFSYFLLTGA---QGILGGFSSEFTGRAYNMNENEAKILAKS---QTGVLIIKLGQDESEK  145 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~---~s~l~~f~~~vLa~af~v~~~~~~~l~~~---q~~~~Iv~~~~~~~~~  145 (325)
                      .|..+   +..|||+|+   +|+|++|++++|++||+++.+++++|+.+   |+++.|+++++||.+.
T Consensus       128 ~n~~~---~~~f~lag~~~~~svl~~f~~evLa~aF~v~~e~~~kl~~~~~~q~~g~Iv~~~~eq~~~  192 (200)
T d2phla1         128 VNNPQ---IHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKE  192 (200)
T ss_dssp             SSSSS---CCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHHH
T ss_pred             CCCCc---cccceeccccccccHhHcCCHHHHHHHcCCCHHHHHHHHhccccccCCceEEcCHHHHHH
Confidence            65443   468999996   49999999999999999999999999853   4557899999976443

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.96  E-value=3.5e-29  Score=225.34  Aligned_cols=158  Identities=22%  Similarity=0.371  Sum_probs=134.5

Q ss_pred             eecCCCCCee-ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545          161 NFANFPADFC-VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL-  238 (325)
Q Consensus       161 nl~~~~p~~~-~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~-  238 (325)
                      +|.+.+|+.. ..+||.+..|| .+.|+|+|+||++.+++|+|+||++||| .+|++|+||++|+|+++|++|++..+| 
T Consensus         7 ~L~a~eP~~r~~sE~G~~E~wd-~~~~qlqcagV~~~r~~I~p~gL~lP~y-s~a~~i~yV~qG~G~~giv~Pgc~et~~   84 (245)
T d1od5a1           7 NLNALEPDHRVESEGGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSY-SPYPQMIIVVQGKGAIGFAFPGCPETFE   84 (245)
T ss_dssp             CCCCBCCCEEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEE-CSSCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred             ccccCCCchhhcccCCeEEeCC-CCCHHHhhcCceeEEEEEcCCccccccc-cCCCeEEEEEeCEEEEEEEeCCChhhhc
Confidence            4666677754 34799999998 5569999999999999999999999999 899999999999999999999864333 


Q ss_pred             -----------------------eEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------CceeeecCc--
Q 020545          239 -----------------------DSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------PALGKLGGK--  284 (325)
Q Consensus       239 -----------------------~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p~~~~laG~--  284 (325)
                                             ..+|++|||++||+|++||.+| |+++++.+++++..|        ++.++|||.  
T Consensus        85 ~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~  164 (245)
T d1od5a1          85 KPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPD  164 (245)
T ss_dssp             ECC---------------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCC
T ss_pred             chhhcccccccccccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCcc
Confidence                                   2469999999999999999777 788999998876544        577899996  


Q ss_pred             -------------------------------cccccCCCHHHHHHHcCCCHHHHHHhhh-ccCCceEe
Q 020545          285 -------------------------------QSVMNGFSASVVQLALNVNEEFLKFFKE-NVATSEIL  320 (325)
Q Consensus       285 -------------------------------~svl~~~~~evla~af~v~~~~v~~l~~-~~~~~~i~  320 (325)
                                                     +|+|++|++++||+|||++.+++++|+. ++..+.|+
T Consensus       165 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~nif~gF~~~~La~Af~v~~e~~~klq~~~~~rG~IV  232 (245)
T d1od5a1         165 IEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIV  232 (245)
T ss_dssp             CSCTTTTC---------------------CCCCTTTTSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEE
T ss_pred             cccchhcccchhhhhcccccccccccccccCCCeeecCCHHHHHHHHCCCHHHHHHHhCcccCCCcEE
Confidence                                           3899999999999999999999999985 44444555

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.96  E-value=1.4e-28  Score=220.57  Aligned_cols=152  Identities=18%  Similarity=0.318  Sum_probs=130.3

Q ss_pred             eecCCCCCee-ccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEE-
Q 020545          161 NFANFPADFC-VKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVL-  238 (325)
Q Consensus       161 nl~~~~p~~~-~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~-  238 (325)
                      +|.+.+|... ..+||.+..|+ .+.+.|+|+|+++.+.+|+|+||++||| .||++|+||++|+|+++|++|++..+| 
T Consensus         7 ~L~a~eP~~ri~sE~G~~E~~d-~~~~qlqcagV~~~r~~I~p~gL~lP~y-~~a~~i~yV~qG~G~~g~v~pgc~et~~   84 (239)
T d1fxza1           7 KLNALKPDNRIESEGGLIETWN-PNNKPFQCAGVALSRCTLNRNALRRPSY-TNGPQEIYIQQGKGIFGMIYPGCPSTFE   84 (239)
T ss_dssp             CCCCBCCSCEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEE-ESSCEEEEEEECCEEEEEECTTCCCC--
T ss_pred             ccccCCCchhhccCCceEEecC-CCChhhhhccchhheeeeccCceeccee-cCCCeEEEEEeCEEEEEEecCCChhhhc
Confidence            5666677632 34799999888 5569999999999999999999999999 899999999999999999998763222 


Q ss_pred             --------------------eEEecCccEEEECCccEEEEEc-CCCCEEEEEEeCCCC--------CceeeecCc-----
Q 020545          239 --------------------DSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSITTSTR--------PALGKLGGK-----  284 (325)
Q Consensus       239 --------------------~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~--------p~~~~laG~-----  284 (325)
                                          ..+|++|||++||+|++||.+| |+++++++++++..|        ++.++|||+     
T Consensus        85 ~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~  164 (239)
T d1fxza1          85 EPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEF  164 (239)
T ss_dssp             ----------------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTT
T ss_pred             ccccccccccccccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCccccc
Confidence                                2489999999999999999777 778999999876543        567899986     


Q ss_pred             -------------------------cccccCCCHHHHHHHcCCCHHHHHHhhhcc
Q 020545          285 -------------------------QSVMNGFSASVVQLALNVNEEFLKFFKENV  314 (325)
Q Consensus       285 -------------------------~svl~~~~~evla~af~v~~~~v~~l~~~~  314 (325)
                                               +|+|++|+.++|++|||++.+++++|+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~gFs~~~La~Afnv~~e~~~klq~~~  219 (239)
T d1fxza1         165 LKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGEN  219 (239)
T ss_dssp             HHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-
T ss_pred             ccccccccccccccccccccccccCCCcccccCHHHHHHHHCcCHHHHHHHhccc
Confidence                                     389999999999999999999999998765

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.96  E-value=1.6e-28  Score=216.31  Aligned_cols=157  Identities=17%  Similarity=0.192  Sum_probs=126.1

Q ss_pred             CceeeeecCCCCCeeccCCeEEEEEcCCCC--cccccc-cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeC
Q 020545          156 NLMVNNFANFPADFCVKKAGMVTSFTGSNF--PFLEQV-GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL  232 (325)
Q Consensus       156 ~~~~~nl~~~~p~~~~~~gG~~~~~~~~~~--p~L~~~-gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p  232 (325)
                      +++.|+..+.++.+.+ ++|++++++..+.  +.|+++ ++++++++|+||||++||| ++|++|.||++|+|++++++|
T Consensus         1 npy~F~~~~~~~~~~~-~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~~~~v~~   78 (203)
T d1uika1           1 NPFHFNSKRFQTLFKN-QYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHH-ADADYLIVILNGTAILTLVNN   78 (203)
T ss_dssp             CTTEECGGGEEEEEEC-SSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEE-ESEEEEEEEEESEEEEEEECS
T ss_pred             CCeeeccccccCceEC-CCCeEEEecccCccchhhccccceEEEEEEecCCCcccccc-CCCcEEEEEEEEEEEEEEEeC
Confidence            3567877766777765 6899999987543  457766 8999999999999999997 699999999999999999999


Q ss_pred             CCceEEeEEecCccEEEECCccEEEEEc-CC-CCEEEEEEeCCCC----CceeeecCc---cccccCCCHHHHHHHcCCC
Q 020545          233 NAKLVLDSEVEAGQLLVVPRCFVVAIIA-GP-EGIECFSITTSTR----PALGKLGGK---QSVMNGFSASVVQLALNVN  303 (325)
Q Consensus       233 ~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~-~~~~~~~~~~s~~----p~~~~laG~---~svl~~~~~evla~af~v~  303 (325)
                      ++...  .+|++|||++||+|++||+.| ++ +.+.++.+....|    .+.++++|.   .|+|++|+++||++||+++
T Consensus        79 ~~~~~--~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~gf~~~vL~~aF~v~  156 (203)
T d1uika1          79 DDRDS--YNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTK  156 (203)
T ss_dssp             SCEEE--EEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSC
T ss_pred             CCeEE--EEecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhHhCCHHHHHHHhCCC
Confidence            88654  469999999999999999776 54 4576666543222    344556653   5899999999999999999


Q ss_pred             HHHHHHhhhccCC
Q 020545          304 EEFLKFFKENVAT  316 (325)
Q Consensus       304 ~~~v~~l~~~~~~  316 (325)
                      ++++++|+..|.+
T Consensus       157 ~e~~~kl~~~q~~  169 (203)
T d1uika1         157 FEEINKVLFGREE  169 (203)
T ss_dssp             HHHHHHHTTC---
T ss_pred             HHHHHHHHhcccc
Confidence            9999999877765

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.95  E-value=2.1e-28  Score=211.62  Aligned_cols=125  Identities=19%  Similarity=0.324  Sum_probs=110.9

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~~   83 (325)
                      |.++++++|||++|+||.||++|+ |+++++++++     . .+++|++|||++||+|++||++|+++ ++|++++++++
T Consensus        48 i~p~~l~~Ph~~~a~ev~yV~~G~-g~v~~v~~~~-----~-~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~  120 (178)
T d1dgwa_          48 SKPNTLLLPHHSDSDLLVLVLEGQ-AILVLVNPDG-----R-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAIT  120 (178)
T ss_dssp             ECTTEEEEEEEESSEEEEEEEESE-EEEEEEETTE-----E-EEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEEC
T ss_pred             ecCCcccccccCCCCEEEEEEEeE-EEEEEecCCc-----e-EEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecC
Confidence            578999999999999999999999 9999999985     4 47999999999999999999999866 58999999986


Q ss_pred             CCCCCCCcceeeeeccc---cccccCCChhHHhhhcCCCHHHHHHHhcccC-ceeEEEe
Q 020545           84 SRAYVPGEFSYFLLTGA---QGILGGFSSEFTGRAYNMNENEAKILAKSQT-GVLIIKL  138 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~---~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~-~~~Iv~~  138 (325)
                      ++  +++.++.|+++|+   +|+|++||+|||++||+++.++++||+.+|+ ++.|+|+
T Consensus       121 ~n--~~~~~~~f~~~~~~~~~svl~~~~~evL~~aF~v~~e~~~kl~~~~~~~g~Iv~~  177 (178)
T d1dgwa_         121 FR--RPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM  177 (178)
T ss_dssp             CS--STTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEEC
T ss_pred             CC--CCccccccccccccCcccHHHhCCHHHHHHHhCCCHHHHHHHHhcccCCCcEEeC
Confidence            54  4677889998875   5899999999999999999999999976654 4689875

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.95  E-value=9.4e-29  Score=217.85  Aligned_cols=129  Identities=19%  Similarity=0.352  Sum_probs=110.4

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~~   83 (325)
                      +.++++++|||++|++|+||++|+ |+++++++++      ..+++|++||||+||+|++||++|+++ ++|.++|+.++
T Consensus        47 i~p~~l~~Ph~~~a~ev~yV~~G~-g~~~~v~~~~------~~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~  119 (203)
T d1uika1          47 SKPNTLLLPHHADADYLIVILNGT-AILTLVNNDD------RDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIP  119 (203)
T ss_dssp             ECSSEEEEEEEESEEEEEEEEESE-EEEEEECSSC------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEE
T ss_pred             ecCCCccccccCCCcEEEEEEEEE-EEEEEEeCCC------eEEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEecC
Confidence            457999999999999999999999 9999999986      347999999999999999999999887 58999999886


Q ss_pred             CCCCCCCcceeeeeccc---cccccCCChhHHhhhcCCCHHHHHHHhcccCc-----------eeEEEecCCc
Q 020545           84 SRAYVPGEFSYFLLTGA---QGILGGFSSEFTGRAYNMNENEAKILAKSQTG-----------VLIIKLGQDE  142 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~---~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~-----------~~Iv~~~~~~  142 (325)
                      .|.  ++.+..|+++|+   .|+|++|+++||++||+++.+++++|+.+|++           +.|++++++|
T Consensus       120 ~n~--~~~~~~f~~~g~~~~~~vl~gf~~~vL~~aF~v~~e~~~kl~~~q~~~~~~~~~~~~~g~iv~~~~eq  190 (203)
T d1uika1         120 VNK--PGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQESVIVEISKKQ  190 (203)
T ss_dssp             SSB--TTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTC------------CCSSEEECCHHH
T ss_pred             CCC--cccccccccccCccccchhHhCCHHHHHHHhCCCHHHHHHHHhcccccccccccccCCCCEeecCHHH
Confidence            554  456789999986   58999999999999999999999999887765           4566665544

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.95  E-value=8.7e-28  Score=206.20  Aligned_cols=142  Identities=15%  Similarity=0.214  Sum_probs=116.8

Q ss_pred             CCeeccCCeEEEEEcC--CCCcccccc-cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEec
Q 020545          167 ADFCVKKAGMVTSFTG--SNFPFLEQV-GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVE  243 (325)
Q Consensus       167 p~~~~~~gG~~~~~~~--~~~p~L~~~-gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~  243 (325)
                      +.+. +++|++++++.  .+.|+|+++ ++++++++|+||||++||| ++|+||.||++|+|+++++++++...  .+|+
T Consensus        16 ~~~~-~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~-~~a~ei~yV~~G~g~v~~v~~~~~~~--~~l~   91 (170)
T d1uija1          16 TLFE-NQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHH-ADADFLLFVLSGRAILTLVNNDDRDS--YNLH   91 (170)
T ss_dssp             EEEE-CSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEE-ESEEEEEEEEESCEEEEEECSSCEEE--EEEC
T ss_pred             cccc-cCCCcEEEEecccccchhhcchhheEEEEEEecCCccccccc-CCCCEEEEEEEEEEEEEEEeCCCcEE--EEec
Confidence            4444 57899999986  457889998 4999999999999999996 89999999999999999999987554  4699


Q ss_pred             CccEEEECCccEEEEEc-CC-CCEEEEEEeCC-CC---CceeeecCc---cccccCCCHHHHHHHcCCCHHHHHHhhh
Q 020545          244 AGQLLVVPRCFVVAIIA-GP-EGIECFSITTS-TR---PALGKLGGK---QSVMNGFSASVVQLALNVNEEFLKFFKE  312 (325)
Q Consensus       244 ~Gdv~vvP~G~~h~~~~-g~-~~~~~~~~~~s-~~---p~~~~laG~---~svl~~~~~evla~af~v~~~~v~~l~~  312 (325)
                      +|||++||+|++||+.| ++ +.++++.+... .+   ...++++|.   .|+|++||++||++||+++++++++|..
T Consensus        92 ~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~~~~~svl~~~~~evLa~aF~v~~e~i~kl~~  169 (170)
T d1uija1          92 PGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLF  169 (170)
T ss_dssp             TTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             CCcEEEECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccCCCcccHhHhCCHHHHHHHhCCCHHHHHHHhc
Confidence            99999999999999877 54 45766655432 22   233445443   6999999999999999999999999864

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=9.6e-28  Score=229.17  Aligned_cols=152  Identities=18%  Similarity=0.227  Sum_probs=133.0

Q ss_pred             eeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceE
Q 020545          158 MVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLV  237 (325)
Q Consensus       158 ~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~  237 (325)
                      .+|++...+-..  ..||++++++..+||+|+  +|++++++|+||||++||||++| ||.||++|++++++++++|+. 
T Consensus        41 ~~~~f~~~~~~~--~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~a-e~~yVl~G~~~vt~Vd~~G~~-  114 (372)
T d1j58a_          41 MKFSFSDTHNRL--EKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRS-  114 (372)
T ss_dssp             CEECGGGSCCEE--ETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSC-EEEEEEEEEEEEEEECTTSCE-
T ss_pred             eeeccccccccc--cCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCcc-cEEEEEeCEEEEEEEeCCCcE-
Confidence            345554433223  368999999999999999  68999999999999999999977 999999999999999999864 


Q ss_pred             EeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhhhccC
Q 020545          238 LDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFKENVA  315 (325)
Q Consensus       238 ~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~~~~~  315 (325)
                      +..+|++||+++||+|++|++.|++++++|+.++++.++.....++.+++++++|.+||+++|++++++++++++.+.
T Consensus       115 ~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf~~~~~~~~~~f~~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~  192 (372)
T d1j58a_         115 FIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEK  192 (372)
T ss_dssp             EEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCC
T ss_pred             EEEEeccCCEEEECCCCEEEEEeCCCCcEEEEEECCCCcccccceeeccccccCCHHHHHHhhCCCHHHHhhcccccc
Confidence            556899999999999999999898889999999999887665666668999999999999999999999999987664

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.94  E-value=5.9e-27  Score=200.96  Aligned_cols=115  Identities=17%  Similarity=0.318  Sum_probs=103.7

Q ss_pred             cccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCC-CEEEEEEeec
Q 020545            5 LYVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSS-DVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~-~l~~~~~~~~   83 (325)
                      |.++++++|||++|+||.||++|+ |++++|++++     . .+++|++|||++||+|++||++|++++ .++++++.++
T Consensus        51 i~p~~~~~Ph~~~a~ei~yV~~G~-g~v~~v~~~~-----~-~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~  123 (170)
T d1uija1          51 SKPNTILLPHHADADFLLFVLSGR-AILTLVNNDD-----R-DSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIP  123 (170)
T ss_dssp             ECTTEEEEEEEESEEEEEEEEESC-EEEEEECSSC-----E-EEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEE
T ss_pred             ecCCcccccccCCCCEEEEEEEEE-EEEEEEeCCC-----c-EEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEecCC
Confidence            578999999999999999999999 9999999986     4 478999999999999999999999874 7999988764


Q ss_pred             CCCCCCCcceeeeeccc---cccccCCChhHHhhhcCCCHHHHHHHhc
Q 020545           84 SRAYVPGEFSYFLLTGA---QGILGGFSSEFTGRAYNMNENEAKILAK  128 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~---~s~l~~f~~~vLa~af~v~~~~~~~l~~  128 (325)
                      +  ++|+.++.|+++|+   +|||++||+|||++||++++++++||+.
T Consensus       124 ~--n~~~~~~~f~~~~~~~~~svl~~~~~evLa~aF~v~~e~i~kl~~  169 (170)
T d1uija1         124 V--NKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLF  169 (170)
T ss_dssp             S--SBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             c--CCCccccccccccCCCcccHhHhCCHHHHHHHhCCCHHHHHHHhc
Confidence            3  36788889999886   6999999999999999999999999974

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.94  E-value=1.1e-26  Score=201.94  Aligned_cols=126  Identities=14%  Similarity=0.152  Sum_probs=102.0

Q ss_pred             cccceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCC---------CCcceEEEEeeCCcEEEeCCCCeEEEEecCCCC
Q 020545            5 LYVHIIVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQK---------HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSD   74 (325)
Q Consensus         5 ~~~~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~---------~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~   74 (325)
                      |.++++++|| |++|++|.||++|+ |++++|+|+|.+         .+.+.+.++|++||||+||+|++||++|+++.+
T Consensus        49 l~p~~~~~Ph~h~~A~~i~~V~~G~-g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d~~  127 (185)
T d1uika2          49 MNEGALFLPHFNSKAIVVLVINEGE-ANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLN  127 (185)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEEESC-EEEEEEEC------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred             cCCCceeeeeecCCCCEEEEEEeeE-EEEEEEccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCCcc
Confidence            6789999999 58999999999999 999999998732         245677889999999999999999999987744


Q ss_pred             EEEEEEeecCCCCCCCcceeeeecc-ccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEe
Q 020545           75 VVIVFVGETSRAYVPGEFSYFLLTG-AQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKL  138 (325)
Q Consensus        75 l~~~~~~~~~~~~~p~~~~~f~laG-~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~  138 (325)
                        ++++... +..+    ..+|++| .+++|++||++||++||+++.++++||+++|++++|+.+
T Consensus       128 --~v~~~~~-~~~~----~~~f~ag~~~~vl~~~~~evLa~aF~v~~~~~~kl~~~q~e~~i~~a  185 (185)
T d1uika2         128 --FFAFGIN-AENN----QRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKSQSESYFVDA  185 (185)
T ss_dssp             --EEEEEET-CTTC----CEEESSSSSSBGGGGSCHHHHHHHSSSCHHHHHHHHHHCCSCSEEEC
T ss_pred             --EEEEEEc-CCCC----cccccccccccccccCCHHHHHHHhCCCHHHHHHHHhcCCceEEecC
Confidence              4444321 1112    2445444 689999999999999999999999999999999999864

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.93  E-value=6.9e-26  Score=192.74  Aligned_cols=126  Identities=17%  Similarity=0.111  Sum_probs=101.9

Q ss_pred             cccceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCC--CCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            5 LYVHIIVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQK--HSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         5 ~~~~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~--~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      |+++++++|| |++|++|.||++|+ |++++|+|++.+  .+.+.+..+|++|||++||+|++||++|+++.++  +++.
T Consensus        27 l~p~~~~~PH~h~~A~~i~~V~~G~-g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~~--v~~~  103 (162)
T d2phla2          27 MEEGALFVPHYYSKAIVILVVNEGE-AHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNF--TGFG  103 (162)
T ss_dssp             ECTTEEEEEEEESSCEEEEEEEESE-EEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEEE--EEEE
T ss_pred             ECCCcEeCCccCCCCCEEEEEEEee-eEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCCceE--EEEE
Confidence            6889999999 69999999999999 999999998732  2234567799999999999999999999876554  4443


Q ss_pred             ecCCCCCCCcceeeeecccc------ccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEe
Q 020545           82 ETSRAYVPGEFSYFLLTGAQ------GILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKL  138 (325)
Q Consensus        82 ~~~~~~~p~~~~~f~laG~~------s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~  138 (325)
                      .. ...+    ..+|++|..      .++++||+|||++||+++.++++||+++|++++|+++
T Consensus       104 ~~-~~~~----~~~flaG~~~sv~~~~~~~~~~~evL~~aF~v~~eevekl~~~q~e~~~v~a  161 (162)
T d2phla2         104 IN-ANNN----NRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDA  161 (162)
T ss_dssp             ES-CTTC----CEEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTCCCCSEEEC
T ss_pred             ec-CCCC----cceeecCccccchhhhcccCCCHHHHHHHhCCCHHHHHHHHhhCCceEEEeC
Confidence            21 2212    256677753      2568899999999999999999999999999999986

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.93  E-value=1.8e-25  Score=192.27  Aligned_cols=120  Identities=15%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             cccceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545            5 LYVHIIVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      |++++++.|| |++|+||.||++|+ |++++|++++    .+.+.++|++|||++||+|++||++|.+ +++.+++++. 
T Consensus        49 l~pga~~~PH~H~~A~ei~yV~~G~-~~v~~v~~~g----~~~~~~~l~~Gdv~vvP~G~~h~~~n~~-~~~~~v~~~~-  121 (174)
T d1fxza2          49 LRKNAMFVPHYNLNANSIIYALNGR-ALIQVVNCNG----ERVFDGELQEGRVLIVPQNFVVAARSQS-DNFEYVSFKT-  121 (174)
T ss_dssp             ECTTCEEEEEEETTCCEEEEEEESE-EEEEEECTTS----CEEEEEEEETTCEEEECTTCEEEEEECS-TTEEEEEEES-
T ss_pred             ecCCCEeCCccCCCCCEEEEEEecc-eEEEEecCCC----ceeEEEEEcCCcEEEECCCCEEEEEeCC-CCeEEEEEEc-
Confidence            6889999999 68999999999999 9999999886    3555678999999999999999999965 5677887773 


Q ss_pred             CCCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEE
Q 020545           84 SRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII  136 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv  136 (325)
                        ..++   ..++++|..++|++||+|||+++|+++.+++++|++.|++..|+
T Consensus       122 --~~~~---~~~~lag~~s~l~~~~~~vl~~af~v~~eei~~lk~~q~~~~~~  169 (174)
T d1fxza2         122 --NDTP---MIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFKFLV  169 (174)
T ss_dssp             --SSSC---CEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCSSEE
T ss_pred             --cCCC---CcccccchhhhhhcCCHHHHHHHHCcCHHHHHHHHhcCCceEeC
Confidence              2333   36788999999999999999999999999999999999877776

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.90  E-value=4.1e-24  Score=183.55  Aligned_cols=117  Identities=14%  Similarity=0.147  Sum_probs=99.4

Q ss_pred             cccceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545            5 LYVHIIVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      |++++++.|| |++|+||.||++|+ |++++|++++    .+.+..+|++|||++||+|++||+.|. ++.++++++++ 
T Consensus        54 L~pga~~~PH~H~~A~ei~yV~~G~-~~v~~v~~~~----~~~~~~~l~~Gdv~~iP~G~~h~~~n~-~~~~~~v~~~~-  126 (173)
T d1od5a2          54 LYRNGIYSPHWNLNANSVIYVTRGK-GRVRVVNCQG----NAVFDGELRRGQLLVVPQNFVVAEQGG-EQGLEYVVFKT-  126 (173)
T ss_dssp             ECTTCEEEEEEESSCCEEEEEEEEE-EEEEEECTTS----CEEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEES-
T ss_pred             EcCCcEecCccCCCCcEEEEEEecc-eEEEEEeCCC----ceEEeEEecCCcEEEECCCCEEEEEcC-CCceEEEEeec-
Confidence            7899999999 68999999999999 9999999986    345567899999999999999999885 46788888773 


Q ss_pred             CCCCCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEE
Q 020545           84 SRAYVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLII  136 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv  136 (325)
                        +.++   ..+.+   .++|++||+|||++||+++.+++++|+.+|+++.|+
T Consensus       127 --~~~~---~~~~~---~s~l~~~p~evl~~af~v~~e~v~~lk~~~~~~~i~  171 (173)
T d1od5a2         127 --HHNA---VSSYI---KDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLV  171 (173)
T ss_dssp             --STTC---CEEEH---HHHHHHSCHHHHHHHHTCCHHHHHHHHHSSCSSSEE
T ss_pred             --CCch---hhhhH---HHHHHhCCHHHHHHHhCcCHHHHHHHHhcCCCCccc
Confidence              2222   12223   499999999999999999999999999999888776

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.89  E-value=9.9e-23  Score=192.86  Aligned_cols=241  Identities=12%  Similarity=0.010  Sum_probs=155.3

Q ss_pred             eccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCC
Q 020545           11 VCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP   89 (325)
Q Consensus        11 ~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p   89 (325)
                      ..|| |.+.+|++||++|+ +.+.+.+.+.     ......+++||++++|+|++|.+.|.++ +.++++++.      |
T Consensus        61 ~~~H~H~~~~E~~~vl~G~-~~~~~~~~~~-----~~~~~~l~~GD~~~~P~g~~H~~~n~~~-~~~~l~v~~------p  127 (348)
T d1juha_          61 VLPHIHQKHYENFYCNKGS-FQLWAQSGNE-----TQQTRVLSSGDYGSVPRNVTHTFQIQDP-DTEMTGVIV------P  127 (348)
T ss_dssp             SCCEECSSCEEEEEEEESE-EEEEEEETTS-----CCEEEEEETTCEEEECTTEEEEEEECST-TEEEEEEEE------S
T ss_pred             CCccccccceEEEEEEeeE-EEEEEeccCC-----ceEEEEeCCCCEEEECCCCeEeeEeCCC-CcEEEEEEC------C
Confidence            3567 55688999999999 9999887653     3346899999999999999999999976 577887773      4


Q ss_pred             CcceeeeeccccccccCCChhHHhhhcC------CCHHHHHHHhcccCceeEEEecCC------cCCCCcccCCCC----
Q 020545           90 GEFSYFLLTGAQGILGGFSSEFTGRAYN------MNENEAKILAKSQTGVLIIKLGQD------ESEKIPLPHQHG----  153 (325)
Q Consensus        90 ~~~~~f~laG~~s~l~~f~~~vLa~af~------v~~~~~~~l~~~q~~~~Iv~~~~~------~~~~~~~~~p~~----  153 (325)
                      +.+..||...+....+..+...+.+.|.      +.....+++.+..  .++.+...+      +...+...++..    
T Consensus       128 g~~e~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (348)
T d1juha_         128 GGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFD--VYAELSFTPRTDTVNGTAPANTVWHTGANAL  205 (348)
T ss_dssp             SCTTHHHHHHSEECCCTTCCSSCCC--------------CGGGGGGT--CEECTTCCCCCCCBTTEESSSSCSSSSCCCC
T ss_pred             CcHHHHHHhhCCchhccCCcccccccccchhhccCChhhhccccccc--cccccccCCcccccccccccccccccccccc
Confidence            5566777766667776666666655554      3344444443322  122211100      000011111111    


Q ss_pred             -CCCceeeeecCC-CCCeec-cCCeEEEE---EcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEE
Q 020545          154 -NANLMVNNFANF-PADFCV-KKAGMVTS---FTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKA  227 (325)
Q Consensus       154 -~~~~~~~nl~~~-~p~~~~-~~gG~~~~---~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~  227 (325)
                       .....+|.+... .+...+ ..+|.+..   .+....+..  ..+++..+++.|+++..||||.+++++.||++|++++
T Consensus       206 ~~~~~~p~~~~~~~~~~~~~~~~~g~i~~~~~~~~~t~~~~--~~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~  283 (348)
T d1juha_         206 ASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTN--YTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVV  283 (348)
T ss_dssp             CSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGC--EEEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEE
T ss_pred             ccccCcceEeecccCcccccccCCceEEeeeecccccCCcc--cceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEE
Confidence             123456777653 333322 23444433   222223322  3578999999999999999999999999999999999


Q ss_pred             EEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEeCC
Q 020545          228 QIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSITTS  273 (325)
Q Consensus       228 ~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~~s  273 (325)
                      +|.+.   +.+  +|++||+++||+|.+|...|......++.+...
T Consensus       284 ~i~~~---~~~--~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~~~~  324 (348)
T d1juha_         284 QIGDY---AAT--ELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSG  324 (348)
T ss_dssp             EETTS---CCE--EECTTCEEEECTTCCEEEEESSSSEEEEEEEES
T ss_pred             EeCCc---ceE--EecCCCEEEECCCCcEEEEeCCCCcEEEEEEcC
Confidence            99542   223  599999999999999998776556666655543

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.86  E-value=1.3e-21  Score=171.51  Aligned_cols=115  Identities=13%  Similarity=0.153  Sum_probs=96.3

Q ss_pred             cccceeeccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545            5 LYVHIIVCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus         5 ~~~~~~~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      |++..+..|| |++|+|+.||++|+ ++++++...+  .+.+.+.++|++||+|+||+|++||++|.|++++++++++  
T Consensus        79 l~pgg~~~PH~Hp~A~Ei~yV~~G~-~~v~~v~~~~--~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f--  153 (201)
T d2et1a1          79 FAPGGTNPPHIHPRATEIGMVMKGE-LLVGILGSLD--SGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSF--  153 (201)
T ss_dssp             ECTTCEEEEEECTTCCEEEEEEESC-EEEEEECCGG--GTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEE--
T ss_pred             ECCCCCcCCcccCCCCEEEEEEcce-EEEEEEeccC--CCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEe--
Confidence            6789999999 67899999999999 9999987521  0137778899999999999999999999999999999888  


Q ss_pred             CCCCCCCcceeeeeccccccc---cCCChhHHhhhcCCCHHHHHHHhccc
Q 020545           84 SRAYVPGEFSYFLLTGAQGIL---GGFSSEFTGRAYNMNENEAKILAKSQ  130 (325)
Q Consensus        84 ~~~~~p~~~~~f~laG~~s~l---~~f~~~vLa~af~v~~~~~~~l~~~q  130 (325)
                       ++++|+.+.   ++  ..+|   .+||.|||++||+++++++++|+++-
T Consensus       154 -~s~~pg~~~---~~--~~~f~~~~~~p~eVLa~af~i~~~~v~kLks~f  197 (201)
T d2et1a1         154 -NSQNPGIVF---VP--LTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF  197 (201)
T ss_dssp             -SSSCCCCEE---HH--HHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             -cCCCCccee---hh--hhhhccCCCCCHHHHHHHhCCCHHHHHHHHhhc
Confidence             566787542   22  1333   46999999999999999999998764

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=9.4e-18  Score=156.90  Aligned_cols=231  Identities=10%  Similarity=0.063  Sum_probs=136.4

Q ss_pred             eccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCC
Q 020545           11 VCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVP   89 (325)
Q Consensus        11 ~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p   89 (325)
                      .-+| |.+++|+.||++|+ +.+.+   ++      + .+.+++||++++|+|..|++.|.++ +.++++++..      
T Consensus        55 ~~~h~H~~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~l~~~~p------  116 (330)
T d1y3ta1          55 FPLHVHKDTHEGILVLDGK-LELTL---DG------E-RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYTMK------  116 (330)
T ss_dssp             EEEEECTTCCEEEEEEESC-EEEEE---TT------E-EEEECTTCEEEECTTCCEEEEECST-TEEEEEEEET------
T ss_pred             CCcccCCCceEEEEEeCCE-EEEEE---CC------E-EEEEcCCCEEEeCCCCeEEEEEcCC-CeEEEEEECC------
Confidence            4456 66789999999999 98876   43      3 4789999999999999999999987 5666666642      


Q ss_pred             CcceeeeeccccccccC-CChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCC-C-CCCceeeeecCCC
Q 020545           90 GEFSYFLLTGAQGILGG-FSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQH-G-NANLMVNNFANFP  166 (325)
Q Consensus        90 ~~~~~f~laG~~s~l~~-f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~-~-~~~~~~~nl~~~~  166 (325)
                      +.+..|+...+..+-.. .+..   ..-++..   ++...............+........... . ......+.+....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  190 (330)
T d1y3ta1         117 GNVAHLYSVIGNPYDHAEHPPY---ASEEVSN---ERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGE  190 (330)
T ss_dssp             TSSTHHHHHHSEECSCSSCCSS---CCCCCTT---CTTGGGTSSCEECCCCCCCSSCSCEECCBCSCCSSSCCEEECTTC
T ss_pred             ccHHHhhhhhceecccccCCcc---ccccccc---cccccccccccccccccccccccccccccccCCccceeeEEEccc
Confidence            22333333221111110 1000   0111111   11111111111111111000000000000 0 0123345555544


Q ss_pred             CCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCcc
Q 020545          167 ADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQ  246 (325)
Q Consensus       167 p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gd  246 (325)
                      ++..... |.........-+...  .+++..+++.||+...||||+...|+.||++|++++.+   +|+ .  ..+++||
T Consensus       191 g~~~~~~-g~~~~~~~~~~~t~~--~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v---~~~-~--~~~~~Gd  261 (330)
T d1y3ta1         191 GDRLLTG-DQLHRIVAAQKNTDG--QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DGQ-E--IQLNPGD  261 (330)
T ss_dssp             SEEEEET-TEEEEEEECGGGTTT--SCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TTE-E--EEECTTC
T ss_pred             CceEecC-CceEEEcCCCcccCC--cEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE---CCE-E--EEeCCCC
Confidence            4444333 333333322222222  47888999999999999999999999999999999965   333 3  3599999


Q ss_pred             EEEECCccEEEEEcCCCCEEEEEEeCCC
Q 020545          247 LLVVPRCFVVAIIAGPEGIECFSITTST  274 (325)
Q Consensus       247 v~vvP~G~~h~~~~g~~~~~~~~~~~s~  274 (325)
                      +++||+|..|...|.+++++++.+++-.
T Consensus       262 ~~~vP~g~~H~~~~~~~~~~~l~~~~p~  289 (330)
T d1y3ta1         262 FLHVPANTVHSYRLDSHYTKMVGVLVPG  289 (330)
T ss_dssp             EEEECTTCCEEEEECSSSEEEEEEEESS
T ss_pred             EEEECcCCcEEeEeCCCCeEEEEEECCc
Confidence            9999999999987766778888776543

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.4e-18  Score=158.71  Aligned_cols=227  Identities=14%  Similarity=0.083  Sum_probs=140.3

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCC
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRA   86 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~   86 (325)
                      +....-+|.++.+|+.||++|+ |.+++++.        + ...+++||++++|+|..|.+.|.|++++.+++++|....
T Consensus        63 PG~~~~~H~H~~~e~~~vl~G~-g~~t~~~~--------~-~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~d~pl~  132 (308)
T d2d40a1          63 PGEVAPSHRHNQSALRFIVEGK-GAFTAVDG--------E-RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLV  132 (308)
T ss_dssp             TTCEEEEEEESSCEEEEEEECS-SCEEEETT--------E-EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECHHHH
T ss_pred             CCCccccccCchhheEEEEEee-EEEEEecC--------E-EEEecCCCEEEeCCCceEEeEECCCCCEEEEEEeccchh
Confidence            4455667866789999999999 99888742        3 478999999999999999999999999999998853211


Q ss_pred             CCCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCC-cCCCCcccCCCCC-CCceeeeecC
Q 020545           87 YVPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQD-ESEKIPLPHQHGN-ANLMVNNFAN  164 (325)
Q Consensus        87 ~~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~-~~~~~~~~~p~~~-~~~~~~nl~~  164 (325)
                      .        +|-  ..++...+.+.....+..+.. ..+. ..    ........ .........+... .+....-...
T Consensus       133 ~--------~l~--~~f~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  196 (308)
T d2d40a1         133 N--------ILG--CGFAEDYPEEQQPVTRKEGDY-LPRY-AA----NMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRL  196 (308)
T ss_dssp             H--------HHT--CCCEEECC--CCCCCSCTTTH-HHHH-SS----SEECSSCCCCSSCSCCEECHHHHHHHHHHHHTT
T ss_pred             h--------hcC--eeeeccCcccccccccCccch-hhhc-cc----ccccccccccccCcccccchhhHHHHHHHHHhc
Confidence            0        010  123334555555544443221 2221 11    11211110 0000000000000 0011111122


Q ss_pred             CCCCeeccCCeEEEEEcCCCC-cccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEec
Q 020545          165 FPADFCVKKAGMVTSFTGSNF-PFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVE  243 (325)
Q Consensus       165 ~~p~~~~~~gG~~~~~~~~~~-p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~  243 (325)
                      .+++..  .++.+...++.+. +...+  +.+....|.||++..+|+| ++.++.||++|++++.|   +|+ .+  +++
T Consensus       197 ~~~~~~--~g~~v~~~~~~~~~~~~~t--~~~~~~~l~pG~~~~~h~h-~~~~~~~v~~G~g~~~v---~~~-~~--~~~  265 (308)
T d2d40a1         197 GDADEW--DGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVART-TDSTIYHVVEGSGQVII---GNE-TF--SFS  265 (308)
T ss_dssp             SCCBTT--TBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEE-SSCEEEEEEEEEEEEEE---TTE-EE--EEE
T ss_pred             cCCCCC--CceEEEeeccccccCccce--eEEEEEEccCCCccCCccC-ChheEEEEEeCcEEEEE---CCE-EE--EEe
Confidence            334322  4677777776554 45554  6788889999999999999 56899999999999887   443 34  599


Q ss_pred             CccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          244 AGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       244 ~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      +||++++|.++.|...|.. +..++.+.
T Consensus       266 ~GD~~~vP~~~~h~~~~~~-d~~l~~v~  292 (308)
T d2d40a1         266 AKDIFVVPTWHGVSFQTTQ-DSVLFSFS  292 (308)
T ss_dssp             TTCEEEECTTCCEEEEEEE-EEEEEEEE
T ss_pred             CCCEEEeCCCCeEEEEcCC-CeEEEEEc
Confidence            9999999999999876633 34445543

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.72  E-value=3.3e-16  Score=147.75  Aligned_cols=225  Identities=14%  Similarity=0.125  Sum_probs=137.9

Q ss_pred             eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCC-
Q 020545            9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAY-   87 (325)
Q Consensus         9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~-   87 (325)
                      ...-+|.++++++.||++|+ |..+.|+.        + ...+++||+|++|+|..|+..|.+++++.++.++|..-.. 
T Consensus        98 e~~~~H~H~~~~~~~vi~G~-g~~t~v~g--------~-~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~d~pl~~~  167 (351)
T d2phda1          98 ETAPEHRHSQNAFRFVVEGE-GVWTVVNG--------D-PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQQ  167 (351)
T ss_dssp             CEEEEEEESSCEEEEEEECE-EEEEEETT--------E-EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEECHHHHHH
T ss_pred             CcCCccccccceeEEEEECC-cEEEEECC--------E-EEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEeecCchhhh
Confidence            34556766899999999999 99888843        3 3689999999999999999999999999999888632110 


Q ss_pred             CCCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCC-----C--Cceee
Q 020545           88 VPGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGN-----A--NLMVN  160 (325)
Q Consensus        88 ~p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~-----~--~~~~~  160 (325)
                      .+.   .|+-.         ..+-.......+....++.....   ........+   .....|...     .  .....
T Consensus       168 l~~---~f~e~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~---~~~~sp~~~yp~~~~~~al~~~  229 (351)
T d2phda1         168 MDV---GFFEF---------GSDRVTDYATPNFSRGERLWCHP---GLRPLSGLQ---NTVASPIGAYRWEFTDRALTEQ  229 (351)
T ss_dssp             TTC---CCEEE---------CCC--CCCCCCSSCHHHHHHCST---TEEEGGGCS---CCSSCSCSEECHHHHHHHHHHH
T ss_pred             ccc---ccccc---------cccccccccCCccchhhhhcccc---ccCcccccc---cccCCCcccCchHHHHhhhhhh
Confidence            010   11111         11111112222333334433221   122222100   000111000     0  00000


Q ss_pred             ee--cCCCCCeeccCCeEEEEEcCCC-CcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceE
Q 020545          161 NF--ANFPADFCVKKAGMVTSFTGSN-FPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLV  237 (325)
Q Consensus       161 nl--~~~~p~~~~~~gG~~~~~~~~~-~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~  237 (325)
                      ..  ....+......++.+..++..+ .+.+.+  +++....|.||....||+|+ +.++.||++|+|++.|   ++ +.
T Consensus       230 ~~~~~~~~~~~~~~g~~~l~yvnp~tg~~~~~t--~~~~~~~l~pG~~~~~hrh~-~~~v~~vi~G~g~~~i---~~-~~  302 (351)
T d2phda1         230 LLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNEV-GSTVFQVFEGAGAVVM---NG-ET  302 (351)
T ss_dssp             HHHHHTTCSCSSBTTEEEEEEBCTTTSSBSBTT--BEEEEEEECTTCBCCCEEES-SCEEEEEEESCEEEEE---TT-EE
T ss_pred             hhcccccccccccCcceeEEEeccccCCCcCCc--ceEEEEEecCCCcCCCcccc-CcEEEEEEeCcEEEEE---CC-EE
Confidence            00  0111221122455677777655 677775  57777889999999999995 6799999999999987   34 34


Q ss_pred             EeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          238 LDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       238 ~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      +  ++++||||+||.++.|...|. +++.+|.+.
T Consensus       303 ~--~~~~gDvf~vP~~~~h~~~n~-~~~~Lf~~~  333 (351)
T d2phda1         303 T--KLEKGDMFVVPSWVPWSLQAE-TQFDLFRFS  333 (351)
T ss_dssp             E--EECTTCEEEECTTCCEEEEES-SCEEEEEEE
T ss_pred             E--EEcCCCEEEeCCCCcEEEecC-CCeEEEEEC
Confidence            4  599999999999999987663 456666654

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=1.2e-15  Score=139.23  Aligned_cols=182  Identities=14%  Similarity=0.156  Sum_probs=120.3

Q ss_pred             ccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           12 CLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        12 ~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      .|+ +.++.+++||++|+ +.+.+   ++      + .+.|++||.+++|+|..|.+.|.++++++++.+....   .+-
T Consensus        81 ~p~~~~~~Ee~~yVl~G~-~~l~~---~g------~-~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i~k~y---~~~  146 (273)
T d1sq4a_          81 KPEQDPNAEAVLFVVEGE-LSLTL---QG------Q-VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHY---QKV  146 (273)
T ss_dssp             SCCCCTTEEEEEEEEESC-EEEEE---SS------C-EEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEEEC---CCC
T ss_pred             CCCCCCCcEEEEEEEeCE-EEEEE---CC------E-EEEecCCCEEEECCCCcEeeeecCCCCEEEEEEEecc---ccc
Confidence            344 45578999999999 99887   43      3 4789999999999999999999999999988775311   110


Q ss_pred             cceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc-ccCCCCCCCceeeeecCCCCCe
Q 020545           91 EFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP-LPHQHGNANLMVNNFANFPADF  169 (325)
Q Consensus        91 ~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~-~~~p~~~~~~~~~nl~~~~p~~  169 (325)
                             .       +.+.                      ...++.-..    .+. .+.+                +.
T Consensus       147 -------~-------g~~~----------------------p~~~v~~~~----dv~p~~~~----------------~~  170 (273)
T d1sq4a_         147 -------D-------GVPL----------------------PEAFVTNEQ----DIQPLVMP----------------DT  170 (273)
T ss_dssp             -------T-------TCCC----------------------CCCEEEEGG----GSCCEECS----------------SG
T ss_pred             -------c-------cccc----------------------ccccccChh----ccCccccc----------------CC
Confidence                   0       1000                      001111111    000 0000                00


Q ss_pred             eccCCeEEEEEcCCCCcccccccceEEEEEecCCCc-cCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEE
Q 020545          170 CVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAM-LSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLL  248 (325)
Q Consensus       170 ~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~-~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~  248 (325)
                      . ......+.++..+.    .-++.+..++++||+- ..+|+|+ ..|+.||++|++++.+   +| +.  ..+++||++
T Consensus       171 ~-~~~~~~r~~~p~d~----~~d~~~~i~~~~PG~~~~~~h~H~-~ee~~~vl~G~~~~~~---~~-~~--~~v~~GD~i  238 (273)
T d1sq4a_         171 E-GRWSTTRFVDMSDM----RHDMHVNIVNFEPGGVIPFAETHV-MEHGLYVLEGKAVYRL---NQ-DW--VEVEAGDFM  238 (273)
T ss_dssp             G-GCEEEECSSCTTCT----TCSEEEEEEEECSSSEESCCCCCS-EEEEEEEEECEEEEEE---TT-EE--EEEETTCEE
T ss_pred             C-ceeEEEEeeCCccc----ccceEEEEEEEccCCccccccccc-cceEEEEEccEEEEEE---CC-EE--EEecCCCEE
Confidence            0 00011111122211    1257889999999984 4589997 5799999999999887   33 33  369999999


Q ss_pred             EECCccEEEEEc-CCCCEEEEEEeCCCC
Q 020545          249 VVPRCFVVAIIA-GPEGIECFSITTSTR  275 (325)
Q Consensus       249 vvP~G~~h~~~~-g~~~~~~~~~~~s~~  275 (325)
                      ++|++.+|++.| |++++.++.+.+-++
T Consensus       239 ~~~~~~ph~~~n~g~~p~~yl~~kd~nR  266 (273)
T d1sq4a_         239 WLRAFCPQACYSGGPGRFRYLLYKDVNR  266 (273)
T ss_dssp             EEEESCCEEEECCSSSCEEEEEEEECSS
T ss_pred             EECCCCCEEeEeCCCCCEEEEEEEEcCc
Confidence            999999999877 788999988876554

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.69  E-value=2.1e-15  Score=135.69  Aligned_cols=174  Identities=13%  Similarity=0.115  Sum_probs=115.9

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCccee
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFSY   94 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~~   94 (325)
                      |.+..|++||++|+ +.+.+   ++      + .+.|++||.+++|+|..|.+.|.++++++++.+-..... -+     
T Consensus        67 ~~~~Ee~~yVl~G~-~~~~~---~~------~-~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~~~y~~-~~-----  129 (250)
T d1sefa_          67 GDGIQTLVYVIDGR-LRVSD---GQ------E-THELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQP-LA-----  129 (250)
T ss_dssp             BTTEEEEEEEEESE-EEEEC---SS------C-EEEEETTEEEEECTTSCCEEEESSSSCEEEEEEEEECCC-CT-----
T ss_pred             CCCcEEEEEEEeeE-EEEEE---CC------E-EEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEEEEeccc-cc-----
Confidence            44567899999999 88887   43      3 478999999999999999999999999999887421100 00     


Q ss_pred             eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCee-ccC
Q 020545           95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFC-VKK  173 (325)
Q Consensus        95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~-~~~  173 (325)
                                 +..++                       .+.....                       +.++... ...
T Consensus       130 -----------~~~p~-----------------------~~~~~~~-----------------------~~e~~~~~~~~  152 (250)
T d1sefa_         130 -----------GHQPY-----------------------KVVGSIH-----------------------DQQPEEYEGMT  152 (250)
T ss_dssp             -----------TCCCC-----------------------CEEEEGG-----------------------GSCCEEGGGCT
T ss_pred             -----------ccccc-----------------------ccccccc-----------------------cccccccCCcc
Confidence                       00000                       0000000                       0000000 001


Q ss_pred             CeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      +.+.....    |.-...++.+..+.++||+....|+|....|+.||++|++++.+   ++ +.+  .+++||++++|++
T Consensus       153 ~~~~~~~~----p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~---~~-~~~--~~~~GD~i~~~~~  222 (250)
T d1sefa_         153 DVLLWSLL----PKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DN-EWY--PVEKGDYIFMSAY  222 (250)
T ss_dssp             TEEEEECS----CSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TT-EEE--EEETTCEEEECTT
T ss_pred             ccceEEec----CccccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE---CC-EEE--EecCCCEEEECCC
Confidence            22222222    22122357899999999999876666678999999999999886   33 333  6999999999999


Q ss_pred             cEEEEEc-CC-CCEEEEEEeC
Q 020545          254 FVVAIIA-GP-EGIECFSITT  272 (325)
Q Consensus       254 ~~h~~~~-g~-~~~~~~~~~~  272 (325)
                      .+|+..| |. +.+.++...+
T Consensus       223 ~pH~~~n~G~~~~~~~l~~k~  243 (250)
T d1sefa_         223 VPQAAYAVGREEPLMYVYSKD  243 (250)
T ss_dssp             CCEEEEEECSSSCEEEEEEEE
T ss_pred             CCEEeEcCCCCCcEEEEEEec
Confidence            9999766 74 5677776543

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.69  E-value=1.5e-16  Score=150.20  Aligned_cols=223  Identities=9%  Similarity=0.038  Sum_probs=144.5

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec-CCCCEEEEEEeecCCCCC
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN-GSSDVVIVFVGETSRAYV   88 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~-g~~~l~~~~~~~~~~~~~   88 (325)
                      ..-+|.+++.++.||++|+ |..++|+.        + ...+++||+|++|+|..|...|. +++++..+.+.|..    
T Consensus        97 ~~~~HrH~~~~~~~vi~G~-g~~t~v~g--------e-~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D~P----  162 (355)
T d3bu7a1          97 RAGAHRHAASALRFIMEGS-GAYTIVDG--------H-KVELGANDFVLTPNGTWHEHGILESGTECIWQDGLDIP----  162 (355)
T ss_dssp             BCCCEEESSCEEEEEEECS-CEEEEETT--------E-EEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEECHH----
T ss_pred             cCcccccccceeEEEEECC-cEEEEECC--------E-EEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEecchH----
Confidence            3445666789999999999 99888843        3 36799999999999999999996 55688777666421    


Q ss_pred             CCcceeeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCC-----CCCceeeeec
Q 020545           89 PGEFSYFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHG-----NANLMVNNFA  163 (325)
Q Consensus        89 p~~~~~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~-----~~~~~~~nl~  163 (325)
                         +..++-+   +++...+.++....+..+....+.....     ........ ..  ...|..     ........+.
T Consensus       163 ---l~~~l~~---~f~e~~p~~~~~~~~~~~~s~~~~~~~~-----~~p~~~~~-~~--~~sp~~~ypw~~~~~al~~~~  228 (355)
T d3bu7a1         163 ---LTNCLEA---NFYEVHPNDYQTTDIPLNDSPLTYGGPA-----LLPQLDKW-DK--PYSPLLKYSWEPTYEALLNYA  228 (355)
T ss_dssp             ---HHHHTTC---CCEEECTTSSCCCCCCTTHHHHHHCSTT-----EEESSCCC-CC--SSCSCCEECHHHHHHHHHHHH
T ss_pred             ---HHhhccc---eecccCchhcccccCCCccchhhhcccc-----cccccccC-Cc--ccCcccccccccchHHHHHHH
Confidence               1112111   4455567777676777666655442211     11111100 00  011100     0000111111


Q ss_pred             C-CCCCeeccCCeEEEEEcCCC-CcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEE
Q 020545          164 N-FPADFCVKKAGMVTSFTGSN-FPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSE  241 (325)
Q Consensus       164 ~-~~p~~~~~~gG~~~~~~~~~-~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~  241 (325)
                      . .+++  +..|+.+..+++.+ .+.+.+  |++....|.||....||+|+ +.++.||++|+|++.|   +| +.+  +
T Consensus       229 ~~~~~~--~~~g~~l~y~nP~tg~~~~~t--i~~~~~~l~pG~~~~~hrH~-~~~v~~v~~G~g~~~i---~g-~~~--~  297 (355)
T d3bu7a1         229 KASDGS--PYDGLILRYTNPQTGGHPMLT--MGASMQMLRPGEHTKAHRHT-GNVIYNVAKGQGYSIV---GG-KRF--D  297 (355)
T ss_dssp             TTCCCB--TTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCEEES-SCEEEEEEECCEEEEE---TT-EEE--E
T ss_pred             hcCCCC--CCCceEEEeccccccCCCcce--eeEEEEEECCCCccCCcCcc-CcEEEEEEECcEEEEE---CC-EEE--E
Confidence            1 2232  33578888877655 366665  57888899999999999996 5689999999999988   44 345  5


Q ss_pred             ecCccEEEECCccEEEEEc-CCC-CEEEEEEe
Q 020545          242 VEAGQLLVVPRCFVVAIIA-GPE-GIECFSIT  271 (325)
Q Consensus       242 l~~Gdv~vvP~G~~h~~~~-g~~-~~~~~~~~  271 (325)
                      +++||+++||.+..|...| +++ .+.++.+.
T Consensus       298 ~~~GDv~~vP~~~~h~~~N~s~~e~~~Lf~~~  329 (355)
T d3bu7a1         298 WSEHDIFCVPAWTWHEHCNTQERDDACLFSFN  329 (355)
T ss_dssp             ECTTCEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             eeCCCEEEeCCCCcEEeecCCCCCcEEEEEec
Confidence            9999999999999998655 554 45555553

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=3.5e-14  Score=127.79  Aligned_cols=174  Identities=13%  Similarity=0.149  Sum_probs=109.8

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcce
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFS   93 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~   93 (325)
                      ||.+..|+.||++|+ +.+.+   ++      + .+.+++||++++|+|..|.+.|.++++++++.+.......  .   
T Consensus        69 h~~~~Ee~~~Vl~G~-~~~~~---~~------~-~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~~~~~~~--~---  132 (253)
T d1rc6a_          69 GGEGIETFLYVISGN-ITAKA---EG------K-TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPV--E---  132 (253)
T ss_dssp             CCTTEEEEEEEEESE-EEEEE---TT------E-EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEECCCC--T---
T ss_pred             cCCCcEEEEEEEECE-EEEEE---CC------E-EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeccccC--C---
Confidence            344567899999999 99876   42      3 5889999999999999999999999999988764211110  0   


Q ss_pred             eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccC
Q 020545           94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKK  173 (325)
Q Consensus        94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~  173 (325)
                                  +..++                       .+. .+..   ... ..+              .+.   ..
T Consensus       133 ------------~~~~~-----------------------~~~-~~~~---d~~-~~~--------------~~~---~~  155 (253)
T d1rc6a_         133 ------------GYAPW-----------------------LVS-GNAS---ELE-RIH--------------YEG---MD  155 (253)
T ss_dssp             ------------TCCCC-----------------------CEE-EEGG---GSC-CC-----------------------
T ss_pred             ------------Cccce-----------------------eec-cccc---ccc-ccc--------------ccc---cc
Confidence                        00000                       000 0000   000 000              000   01


Q ss_pred             CeEEEEEcCCCCcccccccceEEEEEecCCCccC-CeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECC
Q 020545          174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLS-PTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPR  252 (325)
Q Consensus       174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~-Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~  252 (325)
                      +.+++...+.    -...++.+..++++||+-.. +|.| ...|+.||++|++++.+   +|+ .+  ++++||++++|+
T Consensus       156 ~~~~~~~~p~----~~~~~~~~~~~~~~PG~~~~~~h~h-~~ee~~~vl~G~g~~~i---~~~-~~--~~~~GD~i~~~~  224 (253)
T d1rc6a_         156 DVILLDFLPK----ELGFDMNMHILSFAPGASHGYIETH-VQEHGAYILSGQGVYNL---DNN-WI--PVKKGDYIFMGA  224 (253)
T ss_dssp             -CEEEECSCC----STTCSEEEEEEEECTTCCBEEEEEE-SSCEEEEEEESEEEEES---SSC-EE--EEETTCEEEECS
T ss_pred             eeEEEEecCc----cccccEEEEEEEECCCceEeEEEeC-CceEEEEEeCCEEEEEE---CCE-EE--EecCCCEEEECC
Confidence            2222333222    22236789999999998765 6776 57899999999999876   343 33  699999999999


Q ss_pred             ccEEEEEc-CCCC-EEEEEEe
Q 020545          253 CFVVAIIA-GPEG-IECFSIT  271 (325)
Q Consensus       253 G~~h~~~~-g~~~-~~~~~~~  271 (325)
                      |.+|+..| |.+. +.++...
T Consensus       225 ~~ph~~~~~g~~~~~~~~~~~  245 (253)
T d1rc6a_         225 YSLQAGYGVGRGEAFSYIYSK  245 (253)
T ss_dssp             SEEEEEEEC----CEEEEEEE
T ss_pred             CCCEeeeeCCCCCcEEEEEEE
Confidence            99999766 7544 5555443

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.57  E-value=1.4e-13  Score=123.29  Aligned_cols=176  Identities=13%  Similarity=0.081  Sum_probs=119.8

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCcce
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGEFS   93 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~~~   93 (325)
                      +.+...++.||++|+ +.+.+   ++      + .+.|++||.+++|+|..|.+.|.++++++++-...   ....    
T Consensus        64 ~~~~~E~~~~Vl~G~-~~~~~---~g------~-~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~~~~---~~~~----  125 (245)
T d1sfna_          64 TESVYQRFAFVLSGE-VDVAV---GG------E-TRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY---QTVE----  125 (245)
T ss_dssp             ECCSSEEEEEEEEEE-EEEEC---SS------C-EEEECTTEEEEECTTCCCEEEEEEEEEEEEEEECC---CCBT----
T ss_pred             CCCCccEEEEEEECE-EEEEE---CC------E-EEEecCCCEEEeCCCCcEEEEeCCCccEEEEEeec---cccc----
Confidence            344578999999999 88875   43      3 57899999999999999999999988877763321   0000    


Q ss_pred             eeeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCcccCCCCCCCceeeeecCCCCCeeccC
Q 020545           94 YFLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIPLPHQHGNANLMVNNFANFPADFCVKK  173 (325)
Q Consensus        94 ~f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~~~~p~~~~~~~~~nl~~~~p~~~~~~  173 (325)
                           +.                             .....++ .+.+   ...   +      .+      .+   ...
T Consensus       126 -----~~-----------------------------~~P~~~~-~~~~---~~~---~------~p------~~---~~~  149 (245)
T d1sfna_         126 -----GV-----------------------------QAPGVYW-GNER---ENP---G------YP------FE---GDD  149 (245)
T ss_dssp             -----TB-----------------------------CCCCCEE-EETT---TCC---C------EE------TT---SCT
T ss_pred             -----cc-----------------------------CCCccee-cccc---ccc---c------cC------Cc---ccc
Confidence                 00                             0000111 1110   100   0      00      01   113


Q ss_pred             CeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      ++..+.+++.+    ..-.+.+..++++||+-...|.|....|+.||++|++++.+   ++ +.+  .+++||++++|++
T Consensus       150 ~~~~r~l~p~~----~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i---~~-~~~--~v~~GD~i~~~~~  219 (245)
T d1sfna_         150 HLIARKLLPDE----PAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE-NYY--PVTAGDIIWMGAH  219 (245)
T ss_dssp             TEEEEECSCCC----TTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT-EEE--EEETTCEEEECTT
T ss_pred             ceEEEecCCcc----cccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE---CC-EEE--EecCCCEEEECCC
Confidence            45555555433    22357889999999999888876678899999999999877   33 333  6999999999999


Q ss_pred             cEEEEEc-CCCCEEEEEEeCC
Q 020545          254 FVVAIIA-GPEGIECFSITTS  273 (325)
Q Consensus       254 ~~h~~~~-g~~~~~~~~~~~s  273 (325)
                      .+|+..| |++++.++.+.+-
T Consensus       220 ~~H~~~n~g~~~~~~l~~k~~  240 (245)
T d1sfna_         220 CPQWYGALGRNWSKYLLYKDM  240 (245)
T ss_dssp             CCEEEEEESSSCEEEEEEEEC
T ss_pred             CCEeeEeCCCCCEEEEEEecC
Confidence            9999777 8889998866543

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=8.5e-11  Score=92.68  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=64.2

Q ss_pred             cccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEE
Q 020545          188 LEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIE  266 (325)
Q Consensus       188 L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~  266 (325)
                      +......+..+++.||+-..+|||++..|+.||++|++.+.+   +++ .  ..+++||++++|+|.+|+..| |+++++
T Consensus        34 ~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~---~~~-~--~~l~~Gd~~~ip~g~~H~~~N~g~~~~~  107 (115)
T d1o4ta_          34 MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK-D--VPIKAGDVCFTDSGESHSIENTGNTDLE  107 (115)
T ss_dssp             TTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE-E--EEEETTEEEEECTTCEEEEECCSSSCEE
T ss_pred             cCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE---cCe-e--EEeeccEEEEECCCCeEEEEECCCCCEE
Confidence            333345677899999999999999999999999999998875   232 3  369999999999999999765 888988


Q ss_pred             EEEEe
Q 020545          267 CFSIT  271 (325)
Q Consensus       267 ~~~~~  271 (325)
                      ++++.
T Consensus       108 ~l~I~  112 (115)
T d1o4ta_         108 FLAVI  112 (115)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87653

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=2.4e-10  Score=87.89  Aligned_cols=76  Identities=11%  Similarity=0.116  Sum_probs=65.2

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFS  269 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~  269 (325)
                      -++.+..+++.||+-..+|+|+++.|+.||++|++.+.+   +++ .  ..+++||++++|+|..|...| |+++++++.
T Consensus        26 ~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~~~-~--~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~   99 (105)
T d1v70a_          26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE-E--ALLAPGMAAFAPAGAPHGVRNESASPALLLV   99 (105)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE-E--EEECTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             CCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---eee-E--EEecceEEEEeCCCCEEEeEECCCCCEEEEE
Confidence            356788999999999999999999999999999999875   333 2  369999999999999998766 788999887


Q ss_pred             EeC
Q 020545          270 ITT  272 (325)
Q Consensus       270 ~~~  272 (325)
                      +..
T Consensus       100 v~~  102 (105)
T d1v70a_         100 VTA  102 (105)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            753

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.10  E-value=6.4e-10  Score=92.75  Aligned_cols=115  Identities=11%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             ceeeeecCCCCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc-
Q 020545          157 LMVNNFANFPADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK-  235 (325)
Q Consensus       157 ~~~~nl~~~~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~-  235 (325)
                      ...=++.+.+.......|.....+.+.....++  .|.+.+.+|.||+-..+|+|. +.|+.||++|++.+.+-+...+ 
T Consensus         7 ~~vr~i~~~~~~~~g~~g~~~~~~~~~~~~g~~--~i~v~~~~l~PG~~~~~H~H~-~~e~~~Vl~G~g~~~i~~~~~~~   83 (160)
T d1lr5a_           7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMK--EVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKY   83 (160)
T ss_dssp             CSEEEGGGSCCBCTTCTTEEEEEEECHHHHCCS--SEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSS
T ss_pred             hhhcchhhCcccccCCCCceEEEeecccCCCcc--EEEEEEEEECCCccccceecc-ccEEEEEEeeeEEEEECCccccc
Confidence            344455544333333345565666555555666  478999999999999999995 7899999999999988664311 


Q ss_pred             --eEEeEEecCccEEEECCccEEEEEc-CC-CCEEEEEEeCCC
Q 020545          236 --LVLDSEVEAGQLLVVPRCFVVAIIA-GP-EGIECFSITTST  274 (325)
Q Consensus       236 --~~~~~~l~~Gdv~vvP~G~~h~~~~-g~-~~~~~~~~~~s~  274 (325)
                        +.-...|++||+++||+|.+|...| |+ |+++++.+.+..
T Consensus        84 ~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i~~~~  126 (160)
T d1lr5a_          84 PGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRP  126 (160)
T ss_dssp             CCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEESS
T ss_pred             cccceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEEECCC
Confidence              1123469999999999999999776 65 789988877643

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.08  E-value=4.9e-10  Score=87.42  Aligned_cols=74  Identities=15%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ++.+.++.|.||.-..+|||+ ..++.||++|++.+.+-+   +..+  ++++||++++|+|.+|...| ++++++++.+
T Consensus        25 ~~~v~~~~l~pG~~~p~H~H~-~~e~~~Vl~G~~~~~v~~---~e~~--~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v   98 (108)
T d2b8ma1          25 HVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTLED---QEPH--NYKEGNIVYVPFNVKMLIQNINSDILEFFVV   98 (108)
T ss_dssp             SCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEETT---SCCE--EEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             CEEEEEEEECCCCcChhhccc-ccEEEEEEeeeEEEEEec---ccEE--EeecceEeeccCCceEEEEcCCCCcEEEEEE
Confidence            568999999999999999996 789999999999998732   2223  58999999999999999777 7888988876


Q ss_pred             e
Q 020545          271 T  271 (325)
Q Consensus       271 ~  271 (325)
                      .
T Consensus        99 ~   99 (108)
T d2b8ma1          99 K   99 (108)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=6.1e-10  Score=87.61  Aligned_cols=59  Identities=25%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             ccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           12 CLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        12 ~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      -+| |.+.+|++||++|+ +.+.+   ++      + ...+++||++++|+|..|++.|+|+++++++++.
T Consensus        53 ~~H~H~~~~E~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~l~I~  112 (115)
T d1o4ta_          53 GLHKHEGEFEIYYILLGE-GVFHD---NG------K-DVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVI  112 (115)
T ss_dssp             EEEECCSEEEEEEEEESE-EEEEE---TT------E-EEEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             CCEECCCCcEEEEEEECc-ceEEE---cC------e-eEEeeccEEEEECCCCeEEEEECCCCCEEEEEEE
Confidence            346 55678999999999 98876   43      3 4789999999999999999999999999999875

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.98  E-value=6.6e-10  Score=86.65  Aligned_cols=66  Identities=20%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +-.-+-+|+++.+++.||++|+ |.+.+   ++     ++ ...+++||++++|+|..|++.|.++++++++++..
T Consensus        35 pG~~~p~H~H~~~e~~~Vl~G~-~~~~v---~~-----~e-~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~  100 (108)
T d2b8ma1          35 RGEQMPKHYSNSYVHLIIIKGE-MTLTL---ED-----QE-PHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKA  100 (108)
T ss_dssp             TTCBCCCEECSSCEEEEEEESE-EEEEE---TT-----SC-CEEEETTCEEEECTTCEEEEECCSSSEEEEEEEEC
T ss_pred             CCCcChhhcccccEEEEEEeee-EEEEE---ec-----cc-EEEeecceEeeccCCceEEEEcCCCCcEEEEEEEC
Confidence            3344567777889999999999 99987   43     33 36799999999999999999999999999999873

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.94  E-value=2.3e-09  Score=91.84  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +.+|++||++|+ |.+.+-+.++     ...+..+++||+++||+|..|.+.|+|+++|++++++.
T Consensus        95 ~~~E~~~vl~G~-g~~~l~~~~~-----~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde~L~~l~v~~  154 (190)
T d1x82a_          95 DRAEVYVALKGK-GGMLLQTPEG-----DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYP  154 (190)
T ss_dssp             TCCEEEEEEESC-EEEEEECTTC-----CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEE
T ss_pred             CCeEEEEEEEeE-EEEEEeeccC-----ceEEEEecCCcEEEEecceeEEeEECCCCCEEEEEEEC
Confidence            568999999999 9999987664     45578999999999999999999999999999999985

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=7.2e-09  Score=83.81  Aligned_cols=101  Identities=17%  Similarity=0.121  Sum_probs=76.2

Q ss_pred             CCCeeccCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCc
Q 020545          166 PADFCVKKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAG  245 (325)
Q Consensus       166 ~p~~~~~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~G  245 (325)
                      +++++.. .-++..+-..+.|..   ++.+..+++.||+-..+|+|+. .++.||++|++++++-+  + ...  .+++|
T Consensus        12 ~~e~FtG-~v~~~~L~~~~~~~~---~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~g--~-~~~--~~~~G   81 (134)
T d2f4pa1          12 SSDFFTG-NVWVKMLVTDENGVF---NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERG--K-PAR--ILKKG   81 (134)
T ss_dssp             CTTTEES-CEEEEEEECCTTCSS---SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETT--S-CCE--EEETT
T ss_pred             CCcceEe-eEEEeeccCCCCCCc---eeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEECC--c-ceE--EEcCC
Confidence            3445532 234555555555544   4789999999999999999985 69999999999887732  2 222  59999


Q ss_pred             cEEEECCccEEEEEc-CCCCEEEEEEeCCCCC
Q 020545          246 QLLVVPRCFVVAIIA-GPEGIECFSITTSTRP  276 (325)
Q Consensus       246 dv~vvP~G~~h~~~~-g~~~~~~~~~~~s~~p  276 (325)
                      |++++|+|..||..| +++.+..+++....+.
T Consensus        82 d~v~ippg~~H~~~a~~~~~~~~lai~~~~~~  113 (134)
T d2f4pa1          82 DVVEIPPNVVHWHGAAPDEELVHIGISTQVHL  113 (134)
T ss_dssp             CEEEECTTCCEEEEEBTTBCEEEEEEECCGGG
T ss_pred             CeEEECCCCceECccCCCCcEEEEEEEecCCC
Confidence            999999999999877 5678998888765543

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.92  E-value=2.3e-09  Score=89.27  Aligned_cols=73  Identities=8%  Similarity=0.096  Sum_probs=57.2

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEee
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGE   82 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~   82 (325)
                      ..-.-+||++..|++||++|+ |.+.+-+.+. +...+...+.|++||+++||+|.+|.+.|+|+ ++++++++..
T Consensus        51 G~~~~~H~H~~~e~~~Vl~G~-g~~~i~~~~~-~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i~~  124 (160)
T d1lr5a_          51 GQRTPIHRHSCEEVFTVLKGK-GTLLMGSSSL-KYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS  124 (160)
T ss_dssp             TCBCCEEEESSCEEEEEEECC-EEEEECCSSS-SSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEE
T ss_pred             CccccceeccccEEEEEEeee-EEEEECCccc-cccccceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEEEC
Confidence            344457777899999999999 9998844221 11112347899999999999999999999987 7999998874

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=1.7e-09  Score=84.81  Aligned_cols=65  Identities=9%  Similarity=-0.052  Sum_probs=55.6

Q ss_pred             cceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            7 VHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      +..-+-+|+++..|+.||++|+ +.+.+   ++      + .+.+++||.+++|+|..|++.|.++++++++|+..
T Consensus        45 pG~~~~~H~H~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~iip  109 (114)
T d1vj2a_          45 PGGLIDRHSHPWEHEIFVLKGK-LTVLK---EQ------G-EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIP  109 (114)
T ss_dssp             EEEEEEEECCSSCEEEEEEESE-EEEEC---SS------C-EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             CCCCCCceECCCcEEEEEEEce-eEEEE---ee------e-eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEEC
Confidence            3445566777788999999999 88876   43      2 48899999999999999999999999999999985

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.92  E-value=6.1e-09  Score=89.13  Aligned_cols=82  Identities=17%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             cceEEEEEecCCC------ccCCeecCC--CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CC
Q 020545          192 GLSCTILKLDANA------MLSPTYTAD--SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GP  262 (325)
Q Consensus       192 gis~~~v~l~pg~------~~~Ph~h~~--A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~  262 (325)
                      ++.+....|.||.      |...|||+.  ..|+.||++|+|.+.+-+.++.. ....+++||+++||+|..|...| |+
T Consensus        66 ~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~-~~~~v~~Gd~v~iP~g~~H~~~N~Gd  144 (190)
T d1x82a_          66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDA-KWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCE-EEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCce-EEEEecCCcEEEEecceeEEeEECCC
Confidence            5778888999986      445699974  56999999999999999887542 23479999999999999998655 89


Q ss_pred             CCEEEEEEeCCC
Q 020545          263 EGIECFSITTST  274 (325)
Q Consensus       263 ~~~~~~~~~~s~  274 (325)
                      ++++++.+...+
T Consensus       145 e~L~~l~v~~~~  156 (190)
T d1x82a_         145 EPFIFLAIYPAD  156 (190)
T ss_dssp             SCEEEEEEEETT
T ss_pred             CCEEEEEEECCC
Confidence            999999887653

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=2.3e-09  Score=83.98  Aligned_cols=88  Identities=10%  Similarity=0.115  Sum_probs=68.8

Q ss_pred             CeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          174 AGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       174 gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      |...+.+...+.    ..++.+..++|.||+...+|+|+ ..|+.||++|++++.+   +++ .  ..+++||.+++|+|
T Consensus        21 G~~~~~l~~~~~----~~~~~~~~~~i~pG~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~-~--~~l~~Gd~~~ip~~   89 (114)
T d1vj2a_          21 GVRKRVLIGLKD----APNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQG-E--ETVEEGFYIFVEPN   89 (114)
T ss_dssp             EEEEEEEECTTT----CSSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SSC-E--EEEETTEEEEECTT
T ss_pred             CEEEEEEeCCCC----CCceEEEEEEECCCCCCCceECC-CcEEEEEEEceeEEEE---eee-e--eEEecCeEEEEcCC
Confidence            455555544321    22578889999999999999997 5799999999998875   232 3  36999999999999


Q ss_pred             cEEEEEc-CCCCEEEEEEeC
Q 020545          254 FVVAIIA-GPEGIECFSITT  272 (325)
Q Consensus       254 ~~h~~~~-g~~~~~~~~~~~  272 (325)
                      .+|+..| ++++++++.+..
T Consensus        90 ~~H~~~n~~~~~~~~l~iip  109 (114)
T d1vj2a_          90 EIHGFRNDTDSEVEFLCLIP  109 (114)
T ss_dssp             CCEEEECCSSSCEEEEEEEE
T ss_pred             CeEEEEeCCCCCEEEEEEEC
Confidence            9999776 788899888764

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=4.8e-09  Score=80.34  Aligned_cols=61  Identities=16%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             eccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           11 VCLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        11 ~~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      .-+| |++.+|++||++|+ +.+.+   ++      + ...+++||++++|+|..|++.|.|+++++++++..
T Consensus        41 ~~~H~H~~~~e~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~  102 (105)
T d1v70a_          41 QKVHVHEGSDKVYYALEGE-VVVRV---GE------E-EALLAPGMAAFAPAGAPHGVRNESASPALLLVVTA  102 (105)
T ss_dssp             EEEECCSSCEEEEEEEESC-EEEEE---TT------E-EEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEE
T ss_pred             CcceECCCCeEEEEEEeeE-EEEEE---ee------e-EEEecceEEEEeCCCCEEEeEECCCCCEEEEEEEC
Confidence            3445 66778999999999 99887   43      3 47899999999999999999999999999998873

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.85  E-value=2.1e-09  Score=100.22  Aligned_cols=83  Identities=14%  Similarity=0.086  Sum_probs=67.9

Q ss_pred             cceEEEEEecCCCc--cCCeecCCCCEEEEEEeCcEEEEEEeCCCc-eEEeEEecCccEEEECCccEEEEEcCCCCEEEE
Q 020545          192 GLSCTILKLDANAM--LSPTYTADSVQVFYVVKGSGKAQIVGLNAK-LVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECF  268 (325)
Q Consensus       192 gis~~~v~l~pg~~--~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~-~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~  268 (325)
                      .+++..+++.||+.  ..||||.++.|+.||++|++++.+.+.++. +.  ..+++||+++||+|.+|...+.+++.+++
T Consensus        45 ~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~--~~l~~GD~~~~P~g~~H~~~n~~~~~~~l  122 (348)
T d1juha_          45 AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQT--RVLSSGDYGSVPRNVTHTFQIQDPDTEMT  122 (348)
T ss_dssp             SCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEE--EEEETTCEEEECTTEEEEEEECSTTEEEE
T ss_pred             eEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEE--EEeCCCCEEEECCCCeEeeEeCCCCcEEE
Confidence            47899999999985  478999999999999999999999987543 33  36999999999999999977755567777


Q ss_pred             EEeCCCCC
Q 020545          269 SITTSTRP  276 (325)
Q Consensus       269 ~~~~s~~p  276 (325)
                      .+++-...
T Consensus       123 ~v~~pg~~  130 (348)
T d1juha_         123 GVIVPGGF  130 (348)
T ss_dssp             EEEESSCT
T ss_pred             EEECCCcH
Confidence            66655443

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.82  E-value=9.6e-09  Score=78.45  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=61.4

Q ss_pred             CcccccccceEEEEEecCCCcc--CCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-C
Q 020545          185 FPFLEQVGLSCTILKLDANAML--SPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-G  261 (325)
Q Consensus       185 ~p~L~~~gis~~~v~l~pg~~~--~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g  261 (325)
                      +|.....++.+.+++|.||+-.  .+|+| .+.|+.||++|++.+.+   ++ +.  ..|++||.+.+|.+.+|...| |
T Consensus        14 ~p~~~~~~~e~~~~~l~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~---~~-~~--~~l~~GD~~~~~~~~~H~~~n~~   86 (99)
T d1y9qa2          14 FPYAADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF---DE-QW--HELQQGEHIRFFSDQPHGYAAVT   86 (99)
T ss_dssp             EEEETTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE---TT-EE--EEECTTCEEEEECSSSEEEEESS
T ss_pred             ecCCCcCCEEEEEEEEeCCcEeccccccC-CcEEEEEEEcCceEEEe---cc-eE--EEecCCCEEEECCCCeEEEEeCC
Confidence            3554555789999999999965  55664 67899999999999977   33 33  369999999999999999777 6


Q ss_pred             CCCEEEEEE
Q 020545          262 PEGIECFSI  270 (325)
Q Consensus       262 ~~~~~~~~~  270 (325)
                      ++.+.++.+
T Consensus        87 ~~~~~~~vi   95 (99)
T d1y9qa2          87 EKAVFQNIV   95 (99)
T ss_dssp             SCEEEEEEE
T ss_pred             ccCEEEEEE
Confidence            666644443

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.80  E-value=1e-08  Score=78.32  Aligned_cols=60  Identities=8%  Similarity=-0.043  Sum_probs=50.4

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEE
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFV   80 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~   80 (325)
                      ..-+|++.+.|+.||++|+ +.+.+   ++      + ...|++||.+.||+|.+|++.|.|++++.++.+
T Consensus        36 ~~~~H~h~~~E~~~Vl~G~-~~~~~---~~------~-~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~vi   95 (99)
T d1y9qa2          36 MSSPHALGVIEYIHVLEGI-MKVFF---DE------Q-WHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIV   95 (99)
T ss_dssp             EECCCSTTCEEEEEEEESC-EEEEE---TT------E-EEEECTTCEEEEECSSSEEEEESSSCEEEEEEE
T ss_pred             ccccccCCcEEEEEEEcCc-eEEEe---cc------e-EEEecCCCEEEECCCCeEEEEeCCccCEEEEEE
Confidence            3356667889999999999 99987   53      3 688999999999999999999999998755444

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.7e-08  Score=92.40  Aligned_cols=75  Identities=12%  Similarity=0.130  Sum_probs=65.4

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      ++.+....|.||+...+|+|+ +.|+.||++|++++++++.  + .+  .+++||++++|.|.+|...| |++.+.|+.+
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H~-~~e~~~vl~G~g~~t~~~~--~-~~--~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~  126 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVDG--E-RT--PMNEGDFILTPQWRWHDHGNPGDEPVIWLDG  126 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEETT--E-EE--ECCTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             cceeeeEEECCCCccccccCc-hhheEEEEEeeEEEEEecC--E-EE--EecCCCEEEeCCCceEEeEECCCCCEEEEEE
Confidence            578999999999999999995 6899999999999888763  2 23  59999999999999998666 8889999988


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      ++
T Consensus       127 ~d  128 (308)
T d2d40a1         127 LD  128 (308)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.61  E-value=6.7e-08  Score=85.57  Aligned_cols=59  Identities=12%  Similarity=0.204  Sum_probs=52.2

Q ss_pred             ccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeec
Q 020545           14 TENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGET   83 (325)
Q Consensus        14 ~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~   83 (325)
                      ||+...|++||++|+ |.+.+   ++      + .+.+++||++++|++.+||++|.|++++++++.-|.
T Consensus       182 ~~h~~ee~~~vl~G~-~~~~i---~~------~-~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l~~k~~  240 (245)
T d1sfna_         182 EVHYMEHGLLMLEGE-GLYKL---EE------N-YYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDM  240 (245)
T ss_dssp             BCCSSCEEEEEEECE-EEEEE---TT------E-EEEEETTCEEEECTTCCEEEEEESSSCEEEEEEEEC
T ss_pred             ecCCceEEEEEeCCE-EEEEE---CC------E-EEEecCCCEEEECCCCCEeeEeCCCCCEEEEEEecC
Confidence            456789999999999 99888   53      3 588999999999999999999999999999987764

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.58  E-value=5.4e-08  Score=87.64  Aligned_cols=64  Identities=11%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS   84 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~   84 (325)
                      +-.+|++...|+.||++|+ |++.+   ++      + .+.+++||++++|++.+||++|.|+++++.+++.|.+
T Consensus       202 ~~~~h~H~~ee~~~vl~G~-~~~~~---~~------~-~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~~kd~n  265 (273)
T d1sq4a_         202 IPFAETHVMEHGLYVLEGK-AVYRL---NQ------D-WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVN  265 (273)
T ss_dssp             ESCCCCCSEEEEEEEEECE-EEEEE---TT------E-EEEEETTCEEEEEESCCEEEECCSSSCEEEEEEEECS
T ss_pred             cccccccccceEEEEEccE-EEEEE---CC------E-EEEecCCCEEEECCCCCEEeEeCCCCCEEEEEEEEcC
Confidence            3345666678999999999 99988   53      3 4899999999999999999999999999999988754

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.57  E-value=9.2e-08  Score=89.03  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=65.3

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~~~~~~~  270 (325)
                      .|-+....|.||....||+|. +.++.||++|+|..++++.  ++ +  .+++||++++|.|..|...| |++.+.|+.+
T Consensus        86 ~l~~~~~~l~PGe~~~~H~H~-~~~~~~vi~G~g~~t~v~g--~~-~--~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~  159 (351)
T d2phda1          86 TMWAGIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVVNG--DP-V--RMSRGDLLLTPGWCFHGHMNDTDQPMAWIDG  159 (351)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECEEEEEEETT--EE-E--EEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             hhhhheEEECCCCcCCccccc-cceeEEEEECCcEEEEECC--EE-E--EEeCCCEEEeCCCceEEEEEcCCCCEEEEEe
Confidence            678889999999999999994 8899999999999888864  33 3  59999999999999998555 7888999987


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      ++
T Consensus       160 ~d  161 (351)
T d2phda1         160 LD  161 (351)
T ss_dssp             EC
T ss_pred             ec
Confidence            74

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.57  E-value=1.3e-07  Score=73.38  Aligned_cols=66  Identities=20%  Similarity=0.289  Sum_probs=56.1

Q ss_pred             ccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcC
Q 020545          189 EQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAG  261 (325)
Q Consensus       189 ~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g  261 (325)
                      +.-++.+..+.+.||.-..+|+|+. .++.||++|++.+.+   +| +.+  .+++||++++|+|.+|...|.
T Consensus        33 ~~~~~~i~~~~~~~G~~~~~H~h~~-~~~~~vl~G~~~~~~---~~-~~~--~l~~Gd~~~ip~~~~H~~~a~   98 (112)
T d1yhfa1          33 QRQDLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITI---DQ-ETY--RVAEGQTIVMPAGIPHALYAV   98 (112)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEE---TT-EEE--EEETTCEEEECTTSCEEEEES
T ss_pred             ECCCcEEEEEEECCCCCcceEECCC-CEEEEEEeCEEEEEE---cc-EEE--EecCCEEEEcCCCCeEEeEEC
Confidence            3346778889999999999999985 899999999999886   33 333  699999999999999998774

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=8.8e-08  Score=77.24  Aligned_cols=65  Identities=17%  Similarity=0.201  Sum_probs=53.8

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ..-.-+|.++..+++||++|+ |++..   ++     .+ ...+++||++++|+|..||..|.+++++..+++..
T Consensus        45 G~~~~~H~H~~~q~~~Vl~G~-~~~~~---~g-----~~-~~~~~~Gd~v~ippg~~H~~~a~~~~~~~~lai~~  109 (134)
T d2f4pa1          45 GARTHWHSHPGGQILIVTRGK-GFYQE---RG-----KP-ARILKKGDVVEIPPNVVHWHGAAPDEELVHIGIST  109 (134)
T ss_dssp             TCEECSEECTTCEEEEEEEEE-EEEEE---TT-----SC-CEEEETTCEEEECTTCCEEEEEBTTBCEEEEEEEC
T ss_pred             CCcCccccCCCCEEEEEEeCE-EEEEE---CC-----cc-eEEEcCCCeEEECCCCceECccCCCCcEEEEEEEe
Confidence            334456766778999999999 98887   32     23 36899999999999999999999999999998863

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.56  E-value=1.5e-07  Score=74.58  Aligned_cols=60  Identities=10%  Similarity=-0.008  Sum_probs=49.2

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec-CCCCEEEEEEe
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN-GSSDVVIVFVG   81 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~-g~~~l~~~~~~   81 (325)
                      ++...|+.||++|+ ..+.+-+...     .+ .+.|++||.++||++.+|.+.|. |+++++++++.
T Consensus        61 ~H~~eE~~yVl~G~-~~~~~g~~~~-----~~-~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~l~Vt  121 (122)
T d2bnma2          61 GHAGNEFLFVLEGE-IHMKWGDKEN-----PK-EALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVN  121 (122)
T ss_dssp             CCSSCEEEEEEESC-EEEEESCTTS-----CE-EEEECTTCEEEECTTCCEEEEESTTSCCEEEEEEE
T ss_pred             CcccEEEEEEEEEE-EEEEEecccC-----CE-EEEEccCcEEEeCCCCCEEEEcCCCCccEEEEEEE
Confidence            44678999999999 8888743321     23 68899999999999999999996 78899888763

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.53  E-value=1.6e-07  Score=83.25  Aligned_cols=60  Identities=17%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC-CCEEEEEEeec
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS-SDVVIVFVGET   83 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~-~~l~~~~~~~~   83 (325)
                      +||+..+|++||++|+ |.+.+   ++      + .+.+++||++++|+|.+||++|.|. ++++.+..-|.
T Consensus       184 ~h~h~~ee~~~vl~G~-~~~~~---~~------~-~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~~k~~  244 (250)
T d1sefa_         184 IETHVQEHGAYLISGQ-GMYNL---DN------E-WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDA  244 (250)
T ss_dssp             CBCCSCCEEEEEEECE-EEEEE---TT------E-EEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEEEC
T ss_pred             cCccCceEEEEEeCCE-EEEEE---CC------E-EEEecCCCEEEECCCCCEEeEcCCCCCcEEEEEEecC
Confidence            5777889999999999 99888   53      3 5899999999999999999999995 57777655543

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.51  E-value=2.8e-08  Score=83.62  Aligned_cols=66  Identities=12%  Similarity=0.235  Sum_probs=54.2

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ++-.|++..+|+.||++|+ |++.+-..+      +.....+++||+++||+|+.||+-.+.+..++++.+|.
T Consensus        92 F~~EH~H~~dEvr~vv~G~-g~f~v~~~d------~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~  157 (179)
T d1zrra1          92 FLNEHTHGEDEVRFFVEGA-GLFCLHIGD------EVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFD  157 (179)
T ss_dssp             HHSCBEESSCEEEEEEESC-CCCCEECSS------CEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEEC
T ss_pred             hcccccCCCceEEEEEeCe-EEEEEEcCC------eEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEec
Confidence            3456755679999999999 999987543      45456899999999999999999777777888888884

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=2.5e-07  Score=85.02  Aligned_cols=75  Identities=11%  Similarity=0.065  Sum_probs=61.8

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+++..+++.||+-..||+|.++.|+.||++|++++.+   +|+ .+  .|++||++++|+|.+|...|.+++..++.++
T Consensus        41 ~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~-~~--~l~~Gd~~~~p~~~~H~~~n~~~~~~~l~~~  114 (330)
T d1y3ta1          41 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DGE-RY--LLISGDYANIPAGTPHSYRMQSHRTRLVSYT  114 (330)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TTE-EE--EECTTCEEEECTTCCEEEEECSTTEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE---CCE-EE--EEcCCCEEEeCCCCeEEEEEcCCCeEEEEEE
Confidence            47899999999999999999999999999999999875   233 33  5999999999999999876644455555554


Q ss_pred             C
Q 020545          272 T  272 (325)
Q Consensus       272 ~  272 (325)
                      +
T Consensus       115 ~  115 (330)
T d1y3ta1         115 M  115 (330)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.47  E-value=1.7e-07  Score=74.66  Aligned_cols=57  Identities=19%  Similarity=0.197  Sum_probs=48.9

Q ss_pred             cccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           13 LTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        13 p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      |+|+..+|+.||++|+ +.+.+   ++      + .+.|++||+++||+|..|++.|.+  +++++++..
T Consensus        67 ~~~~~~~E~~~vl~G~-~~~~~---~g------~-~~~l~~Gd~~~~p~g~~h~~~~~~--~~~~~~v~~  123 (128)
T d2pyta1          67 PWTLNYDEIDMVLEGE-LHVRH---EG------E-TMIAKAGDVMFIPKGSSIEFGTPT--SVRFLYVAW  123 (128)
T ss_dssp             EEECSSEEEEEEEEEE-EEEEE---TT------E-EEEEETTCEEEECTTCEEEEEEEE--EEEEEEEEE
T ss_pred             ceeCCccEEEEEEEeE-EEEEE---CC------E-EEEecCCCEEEECCCCEEEEEeCC--CEEEEEEEC
Confidence            6788999999999999 99876   43      3 588999999999999999999974  577777764

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=1.7e-07  Score=83.09  Aligned_cols=60  Identities=17%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCC-EEEEEEee
Q 020545           12 CLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSD-VVIVFVGE   82 (325)
Q Consensus        12 ~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~-l~~~~~~~   82 (325)
                      .+||+..+|++||++|+ |.+.+   ++      + .+.+++||++++|+|.+||++|.|+++ ++.+.--|
T Consensus       186 ~~h~h~~ee~~~vl~G~-g~~~i---~~------~-~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~~~~~  246 (253)
T d1rc6a_         186 YIETHVQEHGAYILSGQ-GVYNL---DN------N-WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD  246 (253)
T ss_dssp             EEEEESSCEEEEEEESE-EEEES---SS------C-EEEEETTCEEEECSSEEEEEEEC----CEEEEEEEE
T ss_pred             EEEeCCceEEEEEeCCE-EEEEE---CC------E-EEEecCCCEEEECCCCCEeeeeCCCCCcEEEEEEEC
Confidence            46777889999999999 98887   53      3 588999999999999999999999765 55554443

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.37  E-value=5.4e-07  Score=71.63  Aligned_cols=69  Identities=10%  Similarity=0.265  Sum_probs=54.7

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+++....++||+.   |||....|+.||++|++.+.+   +|+ .+  .|++||+++||+|..|...+- ++++++.+
T Consensus        53 ~~~~~~~~~~~g~~---~~~~~~~E~~~vl~G~~~~~~---~g~-~~--~l~~Gd~~~~p~g~~h~~~~~-~~~~~~~v  121 (128)
T d2pyta1          53 SMAAGFMQWDNAFF---PWTLNYDEIDMVLEGELHVRH---EGE-TM--IAKAGDVMFIPKGSSIEFGTP-TSVRFLYV  121 (128)
T ss_dssp             SSEEEEEEEEEEEE---EEECSSEEEEEEEEEEEEEEE---TTE-EE--EEETTCEEEECTTCEEEEEEE-EEEEEEEE
T ss_pred             ceEEEEEEECCCcc---ceeCCccEEEEEEEeEEEEEE---CCE-EE--EecCCCEEEECCCCEEEEEeC-CCEEEEEE
Confidence            46778889999875   899999999999999999985   343 33  599999999999999987663 34554443

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.36  E-value=5.3e-07  Score=69.87  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=47.3

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      -+-+|+++.++++||++|+ +.+.+   ++      + .+.+++||++++|+|..|.+.|.++  ++++++.
T Consensus        49 ~~~~H~h~~~~~~~vl~G~-~~~~~---~~------~-~~~l~~Gd~~~ip~~~~H~~~a~~~--~~~l~~v  107 (112)
T d1yhfa1          49 EIGRHSSPGDAMVTILSGL-AEITI---DQ------E-TYRVAEGQTIVMPAGIPHALYAVEA--FQMLLVV  107 (112)
T ss_dssp             EEEEECCSSEEEEEEEESE-EEEEE---TT------E-EEEEETTCEEEECTTSCEEEEESSC--EEEEEEE
T ss_pred             CcceEECCCCEEEEEEeCE-EEEEE---cc------E-EEEecCCEEEEcCCCCeEEeEECCC--cEEEEEE
Confidence            3456766679999999999 99887   53      3 4789999999999999999999865  4454443

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.32  E-value=1.3e-06  Score=81.23  Aligned_cols=75  Identities=15%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-C-CCCEEEEE
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-G-PEGIECFS  269 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g-~~~~~~~~  269 (325)
                      .|-+....|.||....+|+| ++.++.||++|+|..++++.  ++ +  .+++||++++|.|.+|...| + ++.+.|+.
T Consensus        84 ~l~~~~q~l~PGe~~~~HrH-~~~~~~~vi~G~g~~t~v~g--e~-~--~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~  157 (355)
T d3bu7a1          84 WLFSGIQTMKAGERAGAHRH-AASALRFIMEGSGAYTIVDG--HK-V--ELGANDFVLTPNGTWHEHGILESGTECIWQD  157 (355)
T ss_dssp             TBEEEEEEECTTCBCCCEEE-SSCEEEEEEECSCEEEEETT--EE-E--EECTTCEEEECTTCCEEEEECTTCCCEEEEE
T ss_pred             hhhhheEeeCCCCcCccccc-ccceeEEEEECCcEEEEECC--EE-E--EeeCCCEEEeCCCceEeeecCCCCCcEEEEE
Confidence            58899999999999999999 58899999999999888864  33 3  59999999999999998654 4 45688887


Q ss_pred             EeC
Q 020545          270 ITT  272 (325)
Q Consensus       270 ~~~  272 (325)
                      +.+
T Consensus       158 ~~D  160 (355)
T d3bu7a1         158 GLD  160 (355)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            664

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.29  E-value=3.8e-06  Score=66.16  Aligned_cols=78  Identities=10%  Similarity=0.127  Sum_probs=59.1

Q ss_pred             cceEEEEEecCCCccCCeec--CCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc--CCCCEEE
Q 020545          192 GLSCTILKLDANAMLSPTYT--ADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA--GPEGIEC  267 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h--~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~--g~~~~~~  267 (325)
                      ++-..+++|.|++-..+.++  -...|+.||++|+..+.+-+....+.+  .|++||.+++|++.+|...|  |++.+.+
T Consensus        40 ~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~--~l~~GDsi~~~~~~pH~~~n~~g~~~a~~  117 (122)
T d2bnma2          40 SLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEA--LLPTGASMFVEEHVPHAFTAAKGTGSAKL  117 (122)
T ss_dssp             TCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEE--EECTTCEEEECTTCCEEEEESTTSCCEEE
T ss_pred             ccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEE--EEccCcEEEeCCCCCEEEEcCCCCccEEE
Confidence            45677899999987766542  247899999999999987553222333  69999999999999998655  5677777


Q ss_pred             EEEe
Q 020545          268 FSIT  271 (325)
Q Consensus       268 ~~~~  271 (325)
                      +.+.
T Consensus       118 l~Vt  121 (122)
T d2bnma2         118 IAVN  121 (122)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7653

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.3e-06  Score=73.19  Aligned_cols=67  Identities=18%  Similarity=0.109  Sum_probs=55.5

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEee
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGE   82 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~   82 (325)
                      ++--|.+...|+.||++|+ |.+.+-..++     +...-.+++||+++||+|+.||+--+.+..++++-+|.
T Consensus        84 F~~EH~H~~~Evr~vl~G~-G~f~v~~~~~-----~~iri~~~~GDli~iPag~~HwFtl~~~~~v~aiRlF~  150 (179)
T d1vr3a1          84 FFEEHLHLDEEIRYILEGS-GYFDVRDKED-----KWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFV  150 (179)
T ss_dssp             HHSCEECSSCEEEEEEEEE-EEEEEECTTS-----CEEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEES
T ss_pred             HhhceeCCCcEEEEEEeCc-EEEEEECCCC-----cEEEEEEeCCCEEEeCCCccEeccCCCCCCEEEEEEEC
Confidence            3445655679999999999 9999977654     55456889999999999999999887777899998884

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.19  E-value=5.8e-07  Score=75.43  Aligned_cols=67  Identities=19%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCC-CEEEEEEeCCC
Q 020545          205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPE-GIECFSITTST  274 (325)
Q Consensus       205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~-~~~~~~~~~s~  274 (325)
                      +...|.|+. .|+.||++|+|++.+-+. + +.++-.+++||+++||+|..||...+.+ .+.++.+|.+.
T Consensus        92 F~~EH~H~~-dEvr~vv~G~g~f~v~~~-d-~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~~  159 (179)
T d1zrra1          92 FLNEHTHGE-DEVRFFVEGAGLFCLHIG-D-EVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP  159 (179)
T ss_dssp             HHSCBEESS-CEEEEEEESCCCCCEECS-S-CEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred             hcccccCCC-ceEEEEEeCeEEEEEEcC-C-eEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecCC
Confidence            667899985 899999999999998874 3 4566679999999999999999877665 48888888654

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=4.6e-06  Score=69.70  Aligned_cols=85  Identities=12%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             EEEEcCCCCcccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEE
Q 020545          177 VTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVV  256 (325)
Q Consensus       177 ~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h  256 (325)
                      +..+++.++|.+..+          -.-+..-|.|+. .||.||++|+|...+-+.++ +.++-.+++||+++||+|..|
T Consensus        66 ~i~l~p~~~pn~~~~----------~~~F~~EH~H~~-~Evr~vl~G~G~f~v~~~~~-~~iri~~~~GDli~iPag~~H  133 (179)
T d1vr3a1          66 IITICKDTLPNYEEK----------IKMFFEEHLHLD-EEIRYILEGSGYFDVRDKED-KWIRISMEKGDMITLPAGIYH  133 (179)
T ss_dssp             EEEESTTTSTTHHHH----------HHHHHSCEECSS-CEEEEEEEEEEEEEEECTTS-CEEEEEEETTEEEEECTTCCE
T ss_pred             EEEECCccCCCHHHH----------HHHHhhceeCCC-cEEEEEEeCcEEEEEECCCC-cEEEEEEeCCCEEEeCCCccE
Confidence            555565666665442          012567899975 79999999999999988765 456667899999999999999


Q ss_pred             EEEcCCCC-EEEEEEeCC
Q 020545          257 AIIAGPEG-IECFSITTS  273 (325)
Q Consensus       257 ~~~~g~~~-~~~~~~~~s  273 (325)
                      |.-.+.++ +.++.+|..
T Consensus       134 wFtl~~~~~v~aiRlF~~  151 (179)
T d1vr3a1         134 RFTLDEKNYVKAMRLFVG  151 (179)
T ss_dssp             EEEECTTCCEEEEEEESS
T ss_pred             eccCCCCCCEEEEEEECC
Confidence            98776654 888888865

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.72  E-value=0.0004  Score=55.00  Aligned_cols=96  Identities=8%  Similarity=-0.057  Sum_probs=69.8

Q ss_pred             CCeEEEEEcCCCCcccccccceEEEE-EecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEEC
Q 020545          173 KAGMVTSFTGSNFPFLEQVGLSCTIL-KLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVP  251 (325)
Q Consensus       173 ~gG~~~~~~~~~~p~L~~~gis~~~v-~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP  251 (325)
                      +.|.+......+.-..+--  .+..+ ...+|.++..|+|...+++.+|+.|+.++.+.+......+. --+.++.++||
T Consensus        13 ~RG~l~~i~~~~~~~f~~k--r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~-l~~~~~~l~IP   89 (135)
T d2pa7a1          13 SRGSLVAIEENKNIPFSIK--RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEIT-LDSPAVGLYVG   89 (135)
T ss_dssp             TTEEEEEEETTTTSSSCCC--EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEE-ECCTTEEEEEC
T ss_pred             CCCCEEEEEcccccccccc--eEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceee-cccCCceeeeC
Confidence            4588887776554333211  33333 36789999999999999999999999999998876544332 33788999999


Q ss_pred             CccEEEEEcCCCCEEEEEEe
Q 020545          252 RCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       252 ~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .|++|-..+-+++..++.+.
T Consensus        90 pg~~h~~~~l~~~s~ll~l~  109 (135)
T d2pa7a1          90 PAVWHEMHDFSSDCVMMVLA  109 (135)
T ss_dssp             TTCEEEEECCCTTCEEEEEE
T ss_pred             CCEeeeEEecCCCcEEEEEc
Confidence            99999988755555555443

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=97.62  E-value=3.4e-05  Score=62.19  Aligned_cols=101  Identities=13%  Similarity=-0.007  Sum_probs=69.8

Q ss_pred             ccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          191 VGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       191 ~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .|....++++.||+...+|+|+ +.+.+||++|+.+.+--+...    ...+.+|+-++.|+|..|....++++++++..
T Consensus        41 tg~~~~l~r~~~G~~~p~H~H~-~~e~~~VL~G~l~~~~g~~~~----g~~~~~g~y~~~Pag~~H~~~~~~e~~~~~~~  115 (144)
T d2o1qa1          41 MGSWTAIFDCPAGSSFAAHVHV-GPGEYFLTKGKMDVRGGKAAG----GDTAIAPGYGYESANARHDKTEFPVASEFYMS  115 (144)
T ss_dssp             TTEEEEEEEECTTEEECCEEES-SCEEEEEEEEEEEETTCGGGT----SEEEESSEEEEECTTCEESCCEEEEEEEEEEE
T ss_pred             CCcEEEEEEeCCCcCcCCCccc-cCEEEEEEEEEEEecCCCcCC----CceEeCCceeEcCCCCeEccccCCCCEEEEEE
Confidence            3678899999999999999997 668899999997664221111    12477999999999999986556777776655


Q ss_pred             eCCCCCceeeecCccccccCCCHHHHHHH
Q 020545          271 TTSTRPALGKLGGKQSVMNGFSASVVQLA  299 (325)
Q Consensus       271 ~~s~~p~~~~laG~~svl~~~~~evla~a  299 (325)
                      +.  -| ..|+--.+++++-+.-+-+.++
T Consensus       116 ~~--Gp-~~~ld~dg~~~~~~~~~~~~~~  141 (144)
T d2o1qa1         116 FL--GP-LTFVKPDGSPIAVIGWEDAQGA  141 (144)
T ss_dssp             EE--SC-EEEECTTSCEEEEECHHHHHHH
T ss_pred             EE--CC-eEEECCCCCEEEEEcHHHHHHH
Confidence            43  33 2455544566655554444433

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.00013  Score=58.82  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=46.5

Q ss_pred             eeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEE-EecCCCCEEEEEE
Q 020545            9 IIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWW-YNNGSSDVVIVFV   80 (325)
Q Consensus         9 ~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~-~N~g~~~l~~~~~   80 (325)
                      .+=.||-.+.-.+.||++|+ |.+.+   ++      + .+.+++||++++|+|.+|.. ...++++.+++.+
T Consensus        29 ~~~Rp~g~~~Y~l~yv~~G~-G~~~i---~~------~-~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl   90 (161)
T d2arca_          29 FIDRPLGMKGYILNLTIRGQ-GVVKN---QG------R-EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (161)
T ss_dssp             CEEETTCCSSEEEEEEEEEC-EEEEE---TT------E-EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             eEECCCCCCCEEEEEEEEeE-EEEEE---CC------E-EEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEE
Confidence            34456755678999999999 99987   52      3 58999999999999999964 4455566665544

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.00025  Score=52.23  Aligned_cols=53  Identities=15%  Similarity=0.312  Sum_probs=40.7

Q ss_pred             EecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccE-EEEE
Q 020545          199 KLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFV-VAII  259 (325)
Q Consensus       199 ~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~-h~~~  259 (325)
                      ..+||.+   .|+-..+|++||++|+++++  +.+|.. .  ++++||++++|+|+- +|..
T Consensus        24 ~~~pg~f---~~~y~~~E~~~ileG~v~i~--~~~G~~-~--~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          24 EKEVSEF---DWYYDTNETCYILEGKVEVT--TEDGKK-Y--VIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             EECSEEE---EEECSSCEEEEEEEEEEEEE--ETTCCE-E--EEETTCEEEECTTCEEEEEE
T ss_pred             eecCcEE---EEEcCccEEEEEEEeEEEEE--cCCCCE-E--EEeCCCEEEECCCCEEEEEE
Confidence            3566665   35567899999999999985  455644 3  599999999999997 6654

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00055  Score=63.97  Aligned_cols=203  Identities=10%  Similarity=-0.025  Sum_probs=101.2

Q ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecC-CCCCCCccee
Q 020545           16 NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETS-RAYVPGEFSY   94 (325)
Q Consensus        16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~-~~~~p~~~~~   94 (325)
                      .|+++++||.+|+ |.+..   +-     .  ...+++||.++||+|+.+.+.=.+  +.+.+.+-..+ ....|.    
T Consensus       149 ADGDeLi~~~~Gs-g~l~T---ef-----G--~L~v~pGDyvVIPRG~~frv~~~~--~~r~yiiE~~g~~~~lPe----  211 (439)
T d1eyba_         149 SDGDFLIVPQKGN-LLIYT---EF-----G--KMLVQPNEICVIQRGMRFSIDVFE--ETRGYILEVYGVHFELPD----  211 (439)
T ss_dssp             SSEEEEEEEEESC-EEEEE---TT-----E--EEEECTTEEEEECTTCCEEEECSS--SEEEEEEEEESCCEECCC----
T ss_pred             CCCCEEEEEEeCc-EEEEE---ee-----e--EEEecCCcEEEecCceEEEEecCC--CceEEEEeecCceeecCc----
Confidence            4678999999999 88776   31     2  368999999999999987665443  44444332111 111121    


Q ss_pred             eeeccccccccCCChhHHhhhcCCCHHHHHHHhcccCceeEEEecCCcCCCCc---c-cCCCC------CCCceeeeecC
Q 020545           95 FLLTGAQGILGGFSSEFTGRAYNMNENEAKILAKSQTGVLIIKLGQDESEKIP---L-PHQHG------NANLMVNNFAN  164 (325)
Q Consensus        95 f~laG~~s~l~~f~~~vLa~af~v~~~~~~~l~~~q~~~~Iv~~~~~~~~~~~---~-~~p~~------~~~~~~~nl~~  164 (325)
                      +=.-|.++++..       +-|.++....+......+-..++|...    .+.   . -+|..      .--+++|||.+
T Consensus       212 ~Gpig~~~l~~p-------RDf~~P~a~~ed~~~~~~~~v~~K~~g----~l~~~~~~hsPfDVVgWhG~~~Pykynl~d  280 (439)
T d1eyba_         212 LGPIGANGLANP-------RDFLIPIAWYEDRQVPGGYTVINKYQG----KLFAAKQDVSPFNVVAWHGNYTPYKYNLKN  280 (439)
T ss_dssp             CGGGTTSCBSCG-------GGEEEECCCCCCCEEEEEEEEEEEETT----EEEEEEEEECSCCEEEEEESCCCEEEEGGG
T ss_pred             ccccccccccCh-------HHhcccccccccccCCCcEEEEEEECC----EEEEEEecCCCceEEeecCcceeEEEehHh
Confidence            001122222221       222222110000000001123344333    221   0 12321      24578999987


Q ss_pred             CCCCee------ccCCeEEEEEcCCCCcccccccce--EEEEEecCCCccCCeecCC-CCEEEEEEeCcEEEEEEeCCCc
Q 020545          165 FPADFC------VKKAGMVTSFTGSNFPFLEQVGLS--CTILKLDANAMLSPTYTAD-SVQVFYVVKGSGKAQIVGLNAK  235 (325)
Q Consensus       165 ~~p~~~------~~~gG~~~~~~~~~~p~L~~~gis--~~~v~l~pg~~~~Ph~h~~-A~ei~yV~~G~~~~~vv~p~g~  235 (325)
                      -.|..+      .+.--.+.+..+ ..|...-.+.-  --|-...+++++.|-||.| .+|.++.+.|.-...       
T Consensus       281 F~pI~sv~~dH~pPsihtvfta~s-~~~G~~v~dFvifPprw~~~~~tfrpPyyHrNv~sE~m~~i~G~y~ar-------  352 (439)
T d1eyba_         281 FMVINSVAFDHADPSIFTVLTAKS-VRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAK-------  352 (439)
T ss_dssp             CBCCCCSSSSCCCGGGGEEEEEEC-SSTTCEEEEEEEECSEEECCSSSCCSCCCBCCSCEEEEEECCC------------
T ss_pred             ceeccccccccCCCcceeEEecCC-CCCCceeEEEEEeCCcccccCCcccCCcccccccceeeeEeecCcccc-------
Confidence            554321      111112333321 12332211111  1123445699999999999 568888887753221       


Q ss_pred             eEEeEEecCccEEEECCccEEE
Q 020545          236 LVLDSEVEAGQLLVVPRCFVVA  257 (325)
Q Consensus       236 ~~~~~~l~~Gdv~vvP~G~~h~  257 (325)
                         +..+.+|.+-.=|.|++|=
T Consensus       353 ---~~gf~pGg~SlHp~g~pHG  371 (439)
T d1eyba_         353 ---QGGFLPGGGSLHSTMTPHG  371 (439)
T ss_dssp             ------CCTTCEEEECTTCCBC
T ss_pred             ---cCCccCCeEEecCCCCCCC
Confidence               1247799999999999884

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=96.86  E-value=0.0011  Score=48.74  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=35.5

Q ss_pred             cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec
Q 020545           15 ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN   70 (325)
Q Consensus        15 h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~   70 (325)
                      +.+.+|++||++|+ ..+..  .++     .  ..++++||+++||+|..--|.-.
T Consensus        33 ~y~~~E~~~ileG~-v~i~~--~~G-----~--~~~~~aGD~~~~p~G~~~~W~v~   78 (88)
T d1o5ua_          33 YYDTNETCYILEGK-VEVTT--EDG-----K--KYVIEKGDLVTFPKGLRCRWKVL   78 (88)
T ss_dssp             ECSSCEEEEEEEEE-EEEEE--TTC-----C--EEEEETTCEEEECTTCEEEEEEE
T ss_pred             EcCccEEEEEEEeE-EEEEc--CCC-----C--EEEEeCCCEEEECCCCEEEEEEC
Confidence            45789999999999 77753  343     3  36799999999999998655443

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=96.80  E-value=0.014  Score=54.65  Aligned_cols=75  Identities=13%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             ceEEEEEecCCCccCCe-ecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CC---CCEEE
Q 020545          193 LSCTILKLDANAMLSPT-YTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GP---EGIEC  267 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph-~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~---~~~~~  267 (325)
                      .++.++++.++.-...- ...+..+|+.|++|++++..-..++. .  ..|++||+++||+|....+.+ +.   +++.+
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~~~~~~-~--~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~  433 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDST-K--QKIDTGYVFFVAPGSSIELTADSANQDQDFTT  433 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETTCGGG-C--EEEETTCEEEECTTCCEEEEECSSCCSSCCEE
T ss_pred             eEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEecCCCcc-E--EEeCCceEEEEcCCceEEEEeecCCCCCceEE
Confidence            45667777664321111 12356799999999998875332222 2  369999999999998755433 32   35665


Q ss_pred             EEE
Q 020545          268 FSI  270 (325)
Q Consensus       268 ~~~  270 (325)
                      +..
T Consensus       434 ~rA  436 (440)
T d1pmia_         434 YRA  436 (440)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.23  E-value=0.0076  Score=52.88  Aligned_cols=62  Identities=10%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCc---------------------------------eEEeEEecCccE
Q 020545          201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAK---------------------------------LVLDSEVEAGQL  247 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~---------------------------------~~~~~~l~~Gdv  247 (325)
                      ..|+-..|||.+ .+-+...++|+=++.+..|...                                 ..+...|++||+
T Consensus       130 ~~g~~~~~H~D~-~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDv  208 (319)
T d1vrba1         130 KNGGGFKAHFDA-YTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTM  208 (319)
T ss_dssp             CSSCCCCSEECS-SEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCE
T ss_pred             CCCCCCccccCC-CceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCE
Confidence            446668889965 4677788999999999987421                                 123457999999


Q ss_pred             EEECCccEEEEEcCCC
Q 020545          248 LVVPRCFVVAIIAGPE  263 (325)
Q Consensus       248 ~vvP~G~~h~~~~g~~  263 (325)
                      ++||+|+.|+..+.++
T Consensus       209 LYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         209 LYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             EEECTTCEEEEECSSC
T ss_pred             EEeCCCceEEeEecCC
Confidence            9999999999776443

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=96.11  E-value=0.017  Score=45.08  Aligned_cols=71  Identities=8%  Similarity=-0.093  Sum_probs=51.3

Q ss_pred             ccc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           12 CLT-ENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        12 ~p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      ..| |...+++.+|+.|+ ..+.+.+...     .....--+.++.++||+|+.|-+.+.++. ..++.+.+  ...+|.
T Consensus        46 G~H~Hk~~~q~~~vi~G~-i~~~~~d~~~-----~~~~~l~~~~~~l~IPpg~~h~~~~l~~~-s~ll~l~~--~~y~~~  116 (135)
T d2pa7a1          46 GFHAHKKLEQVLVCLNGS-CRVILDDGNI-----IQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVLAS--DYYDET  116 (135)
T ss_dssp             EEEEESSCCEEEEEEESC-EEEEEECSSC-----EEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEEES--SCCCGG
T ss_pred             eeeccccccEEEEecccE-EEEEEEeccc-----cceeecccCCceeeeCCCEeeeEEecCCC-cEEEEEcC--CCCChH
Confidence            345 55689999999999 9998887663     33334458899999999999999998765 44444443  344554


Q ss_pred             c
Q 020545           91 E   91 (325)
Q Consensus        91 ~   91 (325)
                      +
T Consensus       117 d  117 (135)
T d2pa7a1         117 D  117 (135)
T ss_dssp             G
T ss_pred             h
Confidence            4

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0084  Score=47.64  Aligned_cols=60  Identities=10%  Similarity=0.087  Sum_probs=42.3

Q ss_pred             ccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEE-EEc-CCCCE--EEEEEe
Q 020545          205 MLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVA-IIA-GPEGI--ECFSIT  271 (325)
Q Consensus       205 ~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~-~~~-g~~~~--~~~~~~  271 (325)
                      +..||=| +...+.||++|+|.+.+=   + +.+  .+++||++++|.|.+|. ..+ ++++.  .|+.|.
T Consensus        30 ~~Rp~g~-~~Y~l~yv~~G~G~~~i~---~-~~y--~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F~   93 (161)
T d2arca_          30 IDRPLGM-KGYILNLTIRGQGVVKNQ---G-REF--VCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFR   93 (161)
T ss_dssp             EEETTCC-SSEEEEEEEEECEEEEET---T-EEE--EECTTCEEEECTTCCEEEEECTTSSEEEEEEEEEC
T ss_pred             EECCCCC-CCEEEEEEEEeEEEEEEC---C-EEE--EecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEEe
Confidence            4455554 346999999999999742   2 344  69999999999999986 444 34553  455554

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.09  E-value=0.031  Score=46.62  Aligned_cols=72  Identities=10%  Similarity=0.101  Sum_probs=55.3

Q ss_pred             cCCCccCCeecC---CCCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTA---DSVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~---~A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++..|||.   .-+++++|++|+...-++|....     +.+...|.+  +..++||+|++|-..+-.++..++-.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~  133 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  133 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecc
Confidence            789999999974   47899999999999999996421     344556766  45999999999988886665554444


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       134 ~s  135 (198)
T d2ixca1         134 CS  135 (198)
T ss_dssp             ES
T ss_pred             cC
Confidence            33

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.01  E-value=0.029  Score=46.20  Aligned_cols=73  Identities=14%  Similarity=0.126  Sum_probs=54.5

Q ss_pred             ecCCCccCCeecCC---CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEE
Q 020545          200 LDANAMLSPTYTAD---SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFS  269 (325)
Q Consensus       200 l~pg~~~~Ph~h~~---A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~  269 (325)
                      -.+|-++..|||..   -+++++|++|+...-++|....     +.....|.+  +..++||.|++|-..+-.++..++-
T Consensus        54 s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y  133 (183)
T d1dzra_          54 SKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLY  133 (183)
T ss_dssp             EETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             eccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEE
Confidence            37899999999842   4799999999999999996421     344456755  5599999999999888666554443


Q ss_pred             EeC
Q 020545          270 ITT  272 (325)
Q Consensus       270 ~~~  272 (325)
                      ..+
T Consensus       134 ~~~  136 (183)
T d1dzra_         134 KAT  136 (183)
T ss_dssp             EES
T ss_pred             eCC
Confidence            333

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.88  E-value=0.021  Score=46.79  Aligned_cols=71  Identities=18%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             cCCCccCCeecCC---CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEec--CccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTAD---SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVE--AGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~~---A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~--~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++..|+|..   -+++++|++|+...-++|....     +.....|.  .+.+++||.|++|-..+-.+...++-.
T Consensus        53 ~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y~  132 (176)
T d1wlta1          53 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  132 (176)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             chheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEEe
Confidence            7899999999832   4579999999999999997421     23344554  667999999999988886555544433


Q ss_pred             e
Q 020545          271 T  271 (325)
Q Consensus       271 ~  271 (325)
                      .
T Consensus       133 ~  133 (176)
T d1wlta1         133 T  133 (176)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=95.86  E-value=0.044  Score=45.81  Aligned_cols=73  Identities=10%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             ecCCCccCCeecCC---CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEec--CccEEEECCccEEEEEcCCCCEEEEE
Q 020545          200 LDANAMLSPTYTAD---SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVE--AGQLLVVPRCFVVAIIAGPEGIECFS  269 (325)
Q Consensus       200 l~pg~~~~Ph~h~~---A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~--~Gdv~vvP~G~~h~~~~g~~~~~~~~  269 (325)
                      -.+|-++..|||..   ..++++|++|+.+..++|..-.     +.....|.  .+..++||.|++|-..+-.+...++-
T Consensus        54 s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~Y  133 (202)
T d1oi6a_          54 SKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSY  133 (202)
T ss_dssp             ECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEE
T ss_pred             chhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeEE
Confidence            37899999999854   5699999999999999995321     23333454  55799999999999888665555443


Q ss_pred             EeC
Q 020545          270 ITT  272 (325)
Q Consensus       270 ~~~  272 (325)
                      ..+
T Consensus       134 ~~s  136 (202)
T d1oi6a_         134 MLS  136 (202)
T ss_dssp             EES
T ss_pred             ecC
Confidence            333

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=95.85  E-value=0.017  Score=46.87  Aligned_cols=48  Identities=10%  Similarity=0.065  Sum_probs=41.4

Q ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEec
Q 020545           16 NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNN   70 (325)
Q Consensus        16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~   70 (325)
                      ...+|++|=++|. ..+.++..+      +.+...+++||+|.+|+.++|.-+-.
T Consensus        53 ~~~eE~FyQlkG~-m~Lkv~e~g------~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          53 DPLEEFFYQLRGN-AYLNLWVDG------RRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             CSSCEEEEEEESC-EEEEEEETT------EEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             Ccchhheeeeccc-eEEEEEeCC------ceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            3478999999999 999999765      44467899999999999999988774

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.77  E-value=0.027  Score=46.49  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=52.1

Q ss_pred             cCCCccCCeec--CCCCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEE
Q 020545          201 DANAMLSPTYT--ADSVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECF  268 (325)
Q Consensus       201 ~pg~~~~Ph~h--~~A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~  268 (325)
                      .+|-++..||+  +.-+++++|++|+...-++|..-.     +.....|..  +..++||.|++|-..+-.++..++
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~  133 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFL  133 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEE
Confidence            57999999997  335799999999999999996421     344456755  668999999999888865554444

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.75  E-value=0.13  Score=45.49  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=40.6

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEcCC
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      .++.++++... ...  -......|+.|++|++++..  . +. .+  .|++||.++||++..-+...|+
T Consensus       247 F~~~~~~~~~~-~~~--~~~~~~~il~vi~G~~~i~~--~-~~-~~--~l~~G~~~~ipa~~~~~~i~G~  307 (315)
T d1qwra_         247 FSVYKWDINGE-AEM--AQDESFLICSVIEGSGLLKY--E-DK-TC--PLKKGDHFILPAQMPDFTIKGT  307 (315)
T ss_dssp             CEEEEEEEEEE-EEE--CCCSSCEEEEEEEEEEEEEE--T-TE-EE--EEETTCEEEECTTCCCEEEEEE
T ss_pred             EEEEEEEecCc-EEe--ccCCCcEEEEEEeCeEEEEE--C-CE-EE--EEecCcEEEEECCCCCEEEEee
Confidence            45666666532 211  12346799999999988763  2 32 33  5999999999999876655443

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.71  E-value=0.032  Score=45.97  Aligned_cols=73  Identities=11%  Similarity=0.090  Sum_probs=54.2

Q ss_pred             cCCCccCCeecCC--CCEEEEEEeCcEEEEEEeCCCc-----eEEeEEecC--ccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          201 DANAMLSPTYTAD--SVQVFYVVKGSGKAQIVGLNAK-----LVLDSEVEA--GQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       201 ~pg~~~~Ph~h~~--A~ei~yV~~G~~~~~vv~p~g~-----~~~~~~l~~--Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+|-++..|+|..  -.++++|++|+...-++|..-.     +.....|.+  +..++||.|++|-..+-.++..++-..
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~  133 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKC  133 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCceEEEEec
Confidence            6899999999743  4789999999999999996421     233445655  669999999999888866655555444


Q ss_pred             CC
Q 020545          272 TS  273 (325)
Q Consensus       272 ~s  273 (325)
                      +.
T Consensus       134 s~  135 (183)
T d1ep0a_         134 TE  135 (183)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=95.67  E-value=0.019  Score=46.67  Aligned_cols=47  Identities=15%  Similarity=0.308  Sum_probs=39.4

Q ss_pred             ecCC-CCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEE
Q 020545          210 YTAD-SVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAI  258 (325)
Q Consensus       210 ~h~~-A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~  258 (325)
                      ||-+ ..|+.|=++|...+-|+..+.  .-+-.+++||+|.+|+..+|.-
T Consensus        50 yH~~~~eE~FyQlkG~m~Lkv~e~g~--~~di~I~EGe~fLLP~~vpHSP   97 (174)
T d1yfua1          50 YHDDPLEEFFYQLRGNAYLNLWVDGR--RERADLKEGDIFLLPPHVRHSP   97 (174)
T ss_dssp             EEECSSCEEEEEEESCEEEEEEETTE--EEEEEECTTCEEEECTTCCEEE
T ss_pred             cccCcchhheeeeccceEEEEEeCCc--eEEEEcCCCcEEEeCCCCCCCc
Confidence            4444 779999999999999998643  4456799999999999999984

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.026  Score=45.87  Aligned_cols=56  Identities=18%  Similarity=0.211  Sum_probs=43.4

Q ss_pred             cCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC--ceEEeEEecCccEEEECCccEEE
Q 020545          201 DANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA--KLVLDSEVEAGQLLVVPRCFVVA  257 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g--~~~~~~~l~~Gdv~vvP~G~~h~  257 (325)
                      .|+.=.-=|+++ ..|+.|=++|...+-|++.++  .+..+-.+++||+|.+|+..+|.
T Consensus        41 GPN~R~DyH~~~-~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHS   98 (175)
T d1zvfa1          41 GPNERTDYHINP-TPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHS   98 (175)
T ss_dssp             SSBCCSCEEECS-SCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEE
T ss_pred             CCCcccccccCc-chhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCC
Confidence            444444335533 789999999999999998742  24456679999999999999998

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=95.52  E-value=0.067  Score=44.19  Aligned_cols=72  Identities=7%  Similarity=0.008  Sum_probs=53.6

Q ss_pred             cCCCccCCeecC---CCCEEEEEEeCcEEEEEEeCCCc-----e--EEeEEecCccEEEECCccEEEEEcCCCCEEEEEE
Q 020545          201 DANAMLSPTYTA---DSVQVFYVVKGSGKAQIVGLNAK-----L--VLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSI  270 (325)
Q Consensus       201 ~pg~~~~Ph~h~---~A~ei~yV~~G~~~~~vv~p~g~-----~--~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~  270 (325)
                      .+|-++..|+|.   .-+++++|++|+...-+++....     +  .+.-..+.+..++||+|++|-..+-.++..++-.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~  133 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  133 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEe
Confidence            689999999863   25699999999999999997521     1  2333447889999999999988786565544433


Q ss_pred             eC
Q 020545          271 TT  272 (325)
Q Consensus       271 ~~  272 (325)
                      .+
T Consensus       134 ~s  135 (190)
T d2c0za1         134 SS  135 (190)
T ss_dssp             ES
T ss_pred             cC
Confidence            33

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.61  Score=40.26  Aligned_cols=80  Identities=15%  Similarity=0.095  Sum_probs=56.3

Q ss_pred             cccccccceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCccEEEEEc-CCCC
Q 020545          186 PFLEQVGLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRCFVVAIIA-GPEG  264 (325)
Q Consensus       186 p~L~~~gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G~~h~~~~-g~~~  264 (325)
                      |......+.+..+.|++|+...-.....-..++||++|++.+.-..      ....+.++++.++-.|-.....+ ++++
T Consensus       160 pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g~~------~~~~l~~~~~~~l~~gd~~~i~~~~~~~  233 (288)
T d1j1la_         160 KVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDD------AQQKIEPHHTAVLGEGDSVQVENKDPKR  233 (288)
T ss_dssp             CCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTT------SCEEECTTEEEEECSCSEEEEECCSSSC
T ss_pred             ccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecCcc------cceeecCceEEEEcCCCeEEEEeCCCCC
Confidence            3434446778889999999877666556678999999999886211      12247888888888887644444 6677


Q ss_pred             EEEEEEe
Q 020545          265 IECFSIT  271 (325)
Q Consensus       265 ~~~~~~~  271 (325)
                      ++++.+-
T Consensus       234 a~~LLl~  240 (288)
T d1j1la_         234 SHFVLIA  240 (288)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            7776654

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=95.39  E-value=0.023  Score=47.29  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             cCCCccCCeecCCCCEEEEEE-eCcEEEEEEeCCCc----eEEeEEecCccEEEECCccEEEEEcCCCCEEEEEEe
Q 020545          201 DANAMLSPTYTADSVQVFYVV-KGSGKAQIVGLNAK----LVLDSEVEAGQLLVVPRCFVVAIIAGPEGIECFSIT  271 (325)
Q Consensus       201 ~pg~~~~Ph~h~~A~ei~yV~-~G~~~~~vv~p~g~----~~~~~~l~~Gdv~vvP~G~~h~~~~g~~~~~~~~~~  271 (325)
                      .+|-++..|+|+.+ ++++|+ .|....-+++....    +.+...|..+..++||.|++|-..+-.++..+.-..
T Consensus        65 ~kgvlRGlH~q~~~-k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~~  139 (194)
T d1nxma_          65 RKNVLRGLHAEPWD-KYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLV  139 (194)
T ss_dssp             ETTBEEEEEECSSC-EEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             eeeEEEEEEeccch-hhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEec
Confidence            57999999999765 666665 59999988886421    345567899999999999999988866665544433

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=95.35  E-value=0.018  Score=50.37  Aligned_cols=62  Identities=10%  Similarity=0.024  Sum_probs=45.4

Q ss_pred             eeccccCCCCeEEEEEeCCeEEEEEEcCCCCC-----------------------------CCcceEEEEeeCCcEEEeC
Q 020545           10 IVCLTENDLHVIPIIIPCELGVAGMVLPNDQK-----------------------------HSQEEIVLGLRKGDVIPVP   60 (325)
Q Consensus        10 ~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~-----------------------------~~~~~~~~~l~~GDv~~vP   60 (325)
                      -+.+|+-..+-+...++|+ =++.+..|...+                             .........|++||+++||
T Consensus       134 ~~~~H~D~~d~f~~Qv~G~-K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDvLYiP  212 (319)
T d1vrba1         134 GFKAHFDAYTNLIFQIQGE-KTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLP  212 (319)
T ss_dssp             CCCSEECSSEEEEEEEESC-EEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEEEEC
T ss_pred             CCccccCCCceeEEeecce-EEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCEEEeC
Confidence            3455654467788889999 899998775310                             0112235689999999999


Q ss_pred             CCCeEEEEecCC
Q 020545           61 LGSASWWYNNGS   72 (325)
Q Consensus        61 ~G~~~~~~N~g~   72 (325)
                      +|..|+..|.++
T Consensus       213 ~gw~H~v~s~~~  224 (319)
T d1vrba1         213 RGLWHSTKSDQA  224 (319)
T ss_dssp             TTCEEEEECSSC
T ss_pred             CCceEEeEecCC
Confidence            999999999765

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.037  Score=44.92  Aligned_cols=54  Identities=13%  Similarity=-0.068  Sum_probs=41.8

Q ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC
Q 020545           16 NDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS   72 (325)
Q Consensus        16 ~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~   72 (325)
                      ....|++|=++|. ..+-++..+.  ...+-+.-.+++||+|.+|+.++|.=+-..+
T Consensus        51 ~~~eE~FYQlkGd-m~Lkv~~~~~--~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~  104 (175)
T d1zvfa1          51 NPTPEWFYQKKGS-MLLKVVDETD--AEPKFIDIIINEGDSYLLPGNVPHSPVRFAD  104 (175)
T ss_dssp             CSSCEEEEEEESC-EEEEEEECSS--SSCEEEEEEECTTEEEEECTTCCEEEEECTT
T ss_pred             CcchhheeeecCc-EEEEEEecCC--CCCceeEEeecCCCEEEeCCCCCCCCCCCCC
Confidence            3478999999999 9999998642  0013334579999999999999998877544

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.025  Score=50.44  Aligned_cols=65  Identities=17%  Similarity=0.281  Sum_probs=49.1

Q ss_pred             EEEecCCCccCC-eecCCCCEEEEEEeCcEEEEEEeCCCc----------------------------------eEEeEE
Q 020545          197 ILKLDANAMLSP-TYTADSVQVFYVVKGSGKAQIVGLNAK----------------------------------LVLDSE  241 (325)
Q Consensus       197 ~v~l~pg~~~~P-h~h~~A~ei~yV~~G~~~~~vv~p~g~----------------------------------~~~~~~  241 (325)
                      .+-|.++|-.+| |+-+ .+-+..+++|+=++.++.|...                                  +.+...
T Consensus       172 ~lwiG~~gs~t~~H~D~-~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~  250 (335)
T d1h2ka_         172 LLLIGMEGNVTPAHYDE-QQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  250 (335)
T ss_dssp             EEEEECTTCEEEEECCS-EEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             EEEEcCCCCCCcccccc-ccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEE
Confidence            466777666555 7754 3678889999999999977410                                  234568


Q ss_pred             ecCccEEEECCccEEEEEcCC
Q 020545          242 VEAGQLLVVPRCFVVAIIAGP  262 (325)
Q Consensus       242 l~~Gdv~vvP~G~~h~~~~g~  262 (325)
                      |++||+++||+|+.|+..+-+
T Consensus       251 l~pGd~L~iP~~w~H~V~~~~  271 (335)
T d1h2ka_         251 VGPGDVLYIPMYWWHHIESLL  271 (335)
T ss_dssp             ECTTCEEEECTTCEEEEEECT
T ss_pred             ECCCCEEeeCCCCeEEEEEcC
Confidence            999999999999999977743

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.084  Score=48.80  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=52.8

Q ss_pred             eEEEEEcCCCCcccccccceEEEEEecCCCccCC-eecCCCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEEEECCc
Q 020545          175 GMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSP-TYTADSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLLVVPRC  253 (325)
Q Consensus       175 G~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~P-h~h~~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~vvP~G  253 (325)
                      |..+.. ...-|.++. |+++- +..-..+|--. -+|.++++++||.+|++++.--  -|  .+  ++++||.+|||+|
T Consensus       114 Gl~t~~-g~Gd~~~~~-G~aih-iy~~n~sM~~~~f~NADGDeLi~~~~Gsg~l~Te--fG--~L--~v~pGDyvVIPRG  184 (439)
T d1eyba_         114 GLHTLC-GAGDIKSNN-GLAIH-IFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTE--FG--KM--LVQPNEICVIQRG  184 (439)
T ss_dssp             TEEEEE-EESCGGGTC-CEEEE-EEEECSCCCSEEEEESSEEEEEEEEESCEEEEET--TE--EE--EECTTEEEEECTT
T ss_pred             ceeeec-ccCCccccc-CcEEE-EEecCCCCccceeEcCCCCEEEEEEeCcEEEEEe--ee--EE--EecCCcEEEecCc
Confidence            444433 344456553 66554 44445557544 5899999999999999988743  34  23  4899999999999


Q ss_pred             cEEEEEc
Q 020545          254 FVVAIIA  260 (325)
Q Consensus       254 ~~h~~~~  260 (325)
                      ..+...-
T Consensus       185 ~~frv~~  191 (439)
T d1eyba_         185 MRFSIDV  191 (439)
T ss_dssp             CCEEEEC
T ss_pred             eEEEEec
Confidence            9876543

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=92.17  E-value=0.06  Score=42.31  Aligned_cols=66  Identities=0%  Similarity=-0.421  Sum_probs=44.3

Q ss_pred             ccceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEEEe
Q 020545            6 YVHIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVFVG   81 (325)
Q Consensus         6 ~~~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~   81 (325)
                      .+.+.+-+|++...+..||++|+ -...-   +.    ... -..+++|+-++.|+|..|... .++++.+++..+
T Consensus        51 ~~G~~~p~H~H~~~e~~~VL~G~-l~~~~---g~----~~~-g~~~~~g~y~~~Pag~~H~~~-~~~e~~~~~~~~  116 (144)
T d2o1qa1          51 PAGSSFAAHVHVGPGEYFLTKGK-MDVRG---GK----AAG-GDTAIAPGYGYESANARHDKT-EFPVASEFYMSF  116 (144)
T ss_dssp             CTTEEECCEEESSCEEEEEEEEE-EEETT---CG----GGT-SEEEESSEEEEECTTCEESCC-EEEEEEEEEEEE
T ss_pred             CCCcCcCCCccccCEEEEEEEEE-EEecC---CC----cCC-CceEeCCceeEcCCCCeEccc-cCCCCEEEEEEE
Confidence            35667778878899999999999 43321   11    111 146889999999999999632 234556665544

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.16  Score=44.98  Aligned_cols=59  Identities=12%  Similarity=-0.027  Sum_probs=43.9

Q ss_pred             cCC-CCeEEEEEeCCeEEEEEEcCCCC----------------C--------------CCcceEEEEeeCCcEEEeCCCC
Q 020545           15 END-LHVIPIIIPCELGVAGMVLPNDQ----------------K--------------HSQEEIVLGLRKGDVIPVPLGS   63 (325)
Q Consensus        15 h~~-a~ei~yV~~G~~g~~~~v~~~~~----------------~--------------~~~~~~~~~l~~GDv~~vP~G~   63 (325)
                      |.| .+-+..+++|+ =++.+..|...                .              ....-....|++||+++||+|.
T Consensus       185 H~D~~~~~~~q~~G~-K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l~pGd~L~iP~~w  263 (335)
T d1h2ka_         185 HYDEQQNFFAQIKGY-KRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYW  263 (335)
T ss_dssp             ECCSEEEEEEEEESC-EEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEECTTCEEEECTTC
T ss_pred             ccccccceEEEeccc-eEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEECCCCEEeeCCCC
Confidence            444 45788999999 99999877520                0              0113345689999999999999


Q ss_pred             eEEEEecCCCC
Q 020545           64 ASWWYNNGSSD   74 (325)
Q Consensus        64 ~~~~~N~g~~~   74 (325)
                      .|+..|.++..
T Consensus       264 ~H~V~~~~~~~  274 (335)
T d1h2ka_         264 WHHIESLLNGG  274 (335)
T ss_dssp             EEEEEECTTSC
T ss_pred             eEEEEEcCCCC
Confidence            99999986643

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=90.83  E-value=2.1  Score=34.31  Aligned_cols=80  Identities=11%  Similarity=0.064  Sum_probs=60.4

Q ss_pred             cceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeC--CCc----eEEeEEecCccEEEECCcc-EEEEEc-C-C
Q 020545          192 GLSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGL--NAK----LVLDSEVEAGQLLVVPRCF-VVAIIA-G-P  262 (325)
Q Consensus       192 gis~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p--~g~----~~~~~~l~~Gdv~vvP~G~-~h~~~~-g-~  262 (325)
                      ++.+..+...||.-..+|=|+++..++.|++|+.+.++...  ++.    ..-...+++||+.++.... .|-..| + +
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~  144 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  144 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCC
Confidence            35677889999999999999999999999999999999863  121    1224578999999987654 787665 5 3


Q ss_pred             CCEEEEEEe
Q 020545          263 EGIECFSIT  271 (325)
Q Consensus       263 ~~~~~~~~~  271 (325)
                      +.++.+=+.
T Consensus       145 ~~avsLHvY  153 (186)
T d3elna1         145 EPAVSLHLY  153 (186)
T ss_dssp             CCEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            555555444

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=89.81  E-value=0.28  Score=45.35  Aligned_cols=56  Identities=16%  Similarity=0.074  Sum_probs=41.4

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCC---CCEEEEEE
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGS---SDVVIVFV   80 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~---~~l~~~~~   80 (325)
                      +..+|++|++|+ +.+..-..+      .. ...|++||+++||+|....+.+.+.   ++++++.-
T Consensus       378 ~~~~Illv~~G~-~~i~~~~~~------~~-~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~~rA  436 (440)
T d1pmia_         378 NGPSIVIATNGK-GTIQITGDD------ST-KQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRA  436 (440)
T ss_dssp             SSCEEEEEEESE-EEEEETTCG------GG-CEEEETTCEEEECTTCCEEEEECSSCCSSCCEEEEE
T ss_pred             CCcEEEEEEcCE-EEEEecCCC------cc-EEEeCCceEEEEcCCceEEEEeecCCCCCceEEEEE
Confidence            467999999999 888763222      22 4789999999999999888888764   35555543

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.80  E-value=1.3  Score=35.68  Aligned_cols=70  Identities=11%  Similarity=-0.012  Sum_probs=47.0

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCC-CCCcceEEEEeeCC--cEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCCc
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQ-KHSQEEIVLGLRKG--DVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPGE   91 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~-~~~~~~~~~~l~~G--Dv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~~   91 (325)
                      .+.+++|++|+ ...-+|+-... ..-.+.....|.+.  ..++||+|.+|=++...+....++ ..+  +..+|+.
T Consensus        71 q~Klv~~i~G~-I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y-~~~--~~y~p~~  143 (183)
T d1dzra_          71 QGKLVRCAVGE-VFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLY-KAT--NYYSPSS  143 (183)
T ss_dssp             CCEEEEEEESE-EEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE-EES--SCCCTTT
T ss_pred             hhhheeecccc-EEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEE-eCC--cccCccC
Confidence            47999999999 99999985420 00123335677664  599999999999999866444444 332  4445543

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=87.26  E-value=2.4  Score=34.65  Aligned_cols=71  Identities=4%  Similarity=-0.082  Sum_probs=46.6

Q ss_pred             cceeeccccC----CCCeEEEEEeCCeEEEEEEcCCCC-CCCcceEEEEee--CCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545            7 VHIIVCLTEN----DLHVIPIIIPCELGVAGMVLPNDQ-KHSQEEIVLGLR--KGDVIPVPLGSASWWYNNGSSDVVIV   78 (325)
Q Consensus         7 ~~~~~~p~h~----~a~ei~yV~~G~~g~~~~v~~~~~-~~~~~~~~~~l~--~GDv~~vP~G~~~~~~N~g~~~l~~~   78 (325)
                      +++|=..|+.    ....+++|++|+ ....+|+-... ..-.+-....|.  .+..++||+|.+|-++...+....++
T Consensus        56 k~vlRGlH~q~~~~~q~Klv~ci~G~-i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~Y  133 (202)
T d1oi6a_          56 RGVVRGIHYTVTPPGTAKYVYCARGK-AMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSY  133 (202)
T ss_dssp             TTBEEEEEEECTTTCCCEEEEEEESC-EEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEE
T ss_pred             hheeeeeeecccccchhheeeecccc-EEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeEE
Confidence            4555555521    256999999999 99999985420 000122244555  45699999999999999876544333

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.99  E-value=3.9  Score=31.36  Aligned_cols=85  Identities=12%  Similarity=0.097  Sum_probs=58.0

Q ss_pred             cCCeEEEEEcCCCCcccccccceEEEEEecCCCccCCeecC--CCCEEEEEEeCc-EEEEEEeCCCc-e--EEeEEecCc
Q 020545          172 KKAGMVTSFTGSNFPFLEQVGLSCTILKLDANAMLSPTYTA--DSVQVFYVVKGS-GKAQIVGLNAK-L--VLDSEVEAG  245 (325)
Q Consensus       172 ~~gG~~~~~~~~~~p~L~~~gis~~~v~l~pg~~~~Ph~h~--~A~ei~yV~~G~-~~~~vv~p~g~-~--~~~~~l~~G  245 (325)
                      ++||.+++.-..+...-+.. +++-.--|.++..  -|||-  +++|+-+...|. .++-++.++|. +  ++-.++..|
T Consensus        17 PEGG~f~et~rs~~~~~R~~-~T~IYyLL~~~~~--s~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~g   93 (140)
T d1znpa1          17 PEGGFYHQTFRDKAGGERGH-STAIYYLLEKGVR--SHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEG   93 (140)
T ss_dssp             TTSSEEEEEEECSSSTTTCS-CEEEEEEEESSCC--EEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTT
T ss_pred             CCCceEEEEEECCCCCCCcc-eEEEEEEcCCCCC--CccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCcccC
Confidence            46888877765544333333 4555566788875  47884  478999999987 77888888774 2  222456778


Q ss_pred             c--EEEECCccEEEEE
Q 020545          246 Q--LLVVPRCFVVAII  259 (325)
Q Consensus       246 d--v~vvP~G~~h~~~  259 (325)
                      +  .++||+|....-.
T Consensus        94 e~~q~vVp~g~W~aa~  109 (140)
T d1znpa1          94 ERPQVIVPANCWQSAE  109 (140)
T ss_dssp             EESEEEECTTCEEEEE
T ss_pred             CceeEEECCCeEEeee
Confidence            7  7899999986643

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.66  E-value=2.8  Score=34.07  Aligned_cols=79  Identities=13%  Similarity=0.038  Sum_probs=52.0

Q ss_pred             cceeecccc---C-CCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeCCc--EEEeCCCCeEEEEecCCCCEEEE
Q 020545            7 VHIIVCLTE---N-DLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRKGD--VIPVPLGSASWWYNNGSSDVVIV   78 (325)
Q Consensus         7 ~~~~~~p~h---~-~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~GD--v~~vP~G~~~~~~N~g~~~l~~~   78 (325)
                      ++++=..|.   + ....+++|++|+ ...-+|+-.. ++.  .+-....|...+  .++||+|.+|=++...+. ..++
T Consensus        55 kgvlRGlH~q~~~~~q~Klv~~i~G~-I~dvvvDlR~-~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~-~~i~  131 (198)
T d2ixca1          55 AGVLRGLHFAQLPPSQAKYVTCVSGS-VFDVVVDIRE-GSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVM  131 (198)
T ss_dssp             TTBEEEEEEECTTTCCCEEEEEEESE-EEEEEECCCB-TCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEE
T ss_pred             hhhheeeeeecccchhhhhhhhhhce-EEEEEEeccc-ccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCc-ceee
Confidence            445555552   1 367999999999 9999998542 111  133456787755  999999999999998655 4344


Q ss_pred             EEeecCCCCCCC
Q 020545           79 FVGETSRAYVPG   90 (325)
Q Consensus        79 ~~~~~~~~~~p~   90 (325)
                      ...+  +..+|.
T Consensus       132 Y~~s--~~y~p~  141 (198)
T d2ixca1         132 YLCS--AEYNPQ  141 (198)
T ss_dssp             EEES--SCCCTT
T ss_pred             cccC--CccCHH
Confidence            3333  334454

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=86.54  E-value=3.4  Score=33.23  Aligned_cols=78  Identities=10%  Similarity=0.012  Sum_probs=55.7

Q ss_pred             ceEEEEEecCCCccCCeecCCCCEEEEEEeCcEEEEEEeCCC--ceE---EeEEecCccEEEE--CCccEEEEEc-C-CC
Q 020545          193 LSCTILKLDANAMLSPTYTADSVQVFYVVKGSGKAQIVGLNA--KLV---LDSEVEAGQLLVV--PRCFVVAIIA-G-PE  263 (325)
Q Consensus       193 is~~~v~l~pg~~~~Ph~h~~A~ei~yV~~G~~~~~vv~p~g--~~~---~~~~l~~Gdv~vv--P~G~~h~~~~-g-~~  263 (325)
                      +.+..+...||.-..||=|.. ..+..|++|.-..++..-.+  ...   -...+++||+.++  +.|.+|-..| + ++
T Consensus        68 f~i~~i~W~pG~~tpiHdH~~-w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~~  146 (192)
T d2gm6a1          68 FSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDR  146 (192)
T ss_dssp             CEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             EEEEEEecCCCCCCCCCCCCC-ceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCCc
Confidence            567788999999999999974 57788999999999887432  211   1346899999887  4467898654 3 44


Q ss_pred             CEEEEEEe
Q 020545          264 GIECFSIT  271 (325)
Q Consensus       264 ~~~~~~~~  271 (325)
                      .++-|=+.
T Consensus       147 ~avSLHvY  154 (192)
T d2gm6a1         147 VSISIHVY  154 (192)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEC
Confidence            44444333

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=86.39  E-value=6.1  Score=30.82  Aligned_cols=131  Identities=14%  Similarity=0.187  Sum_probs=76.9

Q ss_pred             cCCeEEEEEcCCCCc-ccccccceEEEEEecCCCccCCeecC-CCCEEEEEEeCc-EEEEEEeCCCce---EEeEEecCc
Q 020545          172 KKAGMVTSFTGSNFP-FLEQVGLSCTILKLDANAMLSPTYTA-DSVQVFYVVKGS-GKAQIVGLNAKL---VLDSEVEAG  245 (325)
Q Consensus       172 ~~gG~~~~~~~~~~p-~L~~~gis~~~v~l~pg~~~~Ph~h~-~A~ei~yV~~G~-~~~~vv~p~g~~---~~~~~l~~G  245 (325)
                      ++||++++.-..+.. .-...-.++-..-|.++...  |||- +++|+-+...|. .++-+++++|+.   +.-.++..|
T Consensus        17 PEGG~fret~rs~~~~~~~R~~~T~IY~LL~~~~~S--~~Hrv~sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~g   94 (158)
T d1yuda1          17 VEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVS--HFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG   94 (158)
T ss_dssp             TTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCE--EEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCceEEEEEeCCCCCCCCCcceEEEEEEecCCCCC--ceEEecCCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCcC
Confidence            367777776544321 11122345666667888764  5664 499999999997 678888898852   222356778


Q ss_pred             cE--EEECCccEEEEEcCCCCEEEEEEeCCCCCceeeecCccccccCCCHHHHHHHcCCCHHHHHHhh
Q 020545          246 QL--LVVPRCFVVAIIAGPEGIECFSITTSTRPALGKLGGKQSVMNGFSASVVQLALNVNEEFLKFFK  311 (325)
Q Consensus       246 dv--~vvP~G~~h~~~~g~~~~~~~~~~~s~~p~~~~laG~~svl~~~~~evla~af~v~~~~v~~l~  311 (325)
                      +.  ++||+|....-.-...+.-+++..-+  |++.|     +=|.-.+.+-|.+.|---++.+++|-
T Consensus        95 e~~q~vVp~g~w~~a~~~~g~~sLvsctVa--PGFdf-----~Dfel~~~~~L~~~~P~~~~~I~~lt  155 (158)
T d1yuda1          95 ERPQFLVPKGCIFGSAMNQDGFSLVGCMVS--PGFTF-----DDFELFSQEALLAMYPQHKAVVQKLS  155 (158)
T ss_dssp             EESCEEECTTCEEEEEESSSSEEEEEEEES--SCCCG-----GGCCBCBHHHHHHSCCTTHHHHTTSC
T ss_pred             ceeEEEEcCCCEEEEEEcCCCcEEEEEEEc--CCccc-----hhccccCHHHHHHHCchhHHHHHHHc
Confidence            87  89999976542222334444444332  32211     11112356677777766677777763

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=85.06  E-value=2.1  Score=34.12  Aligned_cols=79  Identities=16%  Similarity=0.105  Sum_probs=50.6

Q ss_pred             cceeeccccC----CCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEee--CCcEEEeCCCCeEEEEecCCCCEEEE
Q 020545            7 VHIIVCLTEN----DLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLR--KGDVIPVPLGSASWWYNNGSSDVVIV   78 (325)
Q Consensus         7 ~~~~~~p~h~----~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~--~GDv~~vP~G~~~~~~N~g~~~l~~~   78 (325)
                      ++++=..|..    ....+++|++|+ ...-+|+... .+.  .+.....|.  .+.+++||+|.+|=++...+.. .++
T Consensus        54 kgvlRG~H~q~~~~~q~Klv~ci~G~-I~dvvvDlR~-~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~-~i~  130 (176)
T d1wlta1          54 KGVVRGLHYQRTPKEQGKIIFVPKGR-ILDVAVDVRK-SSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSI-VIY  130 (176)
T ss_dssp             TTBEEEEEEECTTSCCEEEEEEEESE-EEEEEEECBT-TSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEE-EEE
T ss_pred             hheeeecccccccCCccEEEEEeccc-eEEEEEeecc-CCCccceeeeEEeeccccceEEEccceeeEEeeccccc-eEE
Confidence            4555555522    245799999999 9999998642 110  123345665  5669999999999999987643 344


Q ss_pred             EEeecCCCCCCC
Q 020545           79 FVGETSRAYVPG   90 (325)
Q Consensus        79 ~~~~~~~~~~p~   90 (325)
                      ...+  +..+|.
T Consensus       131 Y~~~--~~y~p~  140 (176)
T d1wlta1         131 FITH--NEYSPP  140 (176)
T ss_dssp             EEES--SCCCGG
T ss_pred             EecC--CccChh
Confidence            3332  344453

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.39  E-value=3.1  Score=33.34  Aligned_cols=68  Identities=15%  Similarity=0.070  Sum_probs=45.7

Q ss_pred             CCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           18 LHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        18 a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      ...+++|++|+ ...-+|+-.. ++.  .+-....|.+  +..++||+|.+|=++-..+. ..++...+  +..+|+
T Consensus        69 q~Klv~~~~G~-I~dv~vD~R~-~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~-~~i~Y~~s--~~y~p~  140 (183)
T d1ep0a_          69 QGKLVRVIRGE-IFDVAVDLRK-NSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYKCT--ELYHPE  140 (183)
T ss_dssp             CCEEEEEEESE-EEEEEEECCT-TCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEEES--SCCCGG
T ss_pred             HHhhhcccccE-EEEEEEeccC-CCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCc-eEEEEecc--CCcCcc
Confidence            47899999999 9999998542 111  1333456666  55899999999999988654 43443332  344444

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=83.93  E-value=3.4  Score=33.27  Aligned_cols=69  Identities=6%  Similarity=-0.124  Sum_probs=46.4

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEE--EeeCCcEEEeCCCCeEEEEecCCCCEEEEEEeecCCCCCCC
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVL--GLRKGDVIPVPLGSASWWYNNGSSDVVIVFVGETSRAYVPG   90 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~--~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~~~~~~~~~~p~   90 (325)
                      ...++++|++|+ ....+|+... ++.  .+-...  ..+.+..++||+|.+|=++...+....++ ..+  +..+|.
T Consensus        69 ~q~Klv~~i~G~-i~dv~vDlR~-~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y-~~s--~~y~p~  141 (190)
T d2c0za1          69 GQAKYVTCVRGA-VFDVVVDLRV-GSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCY-LSS--GTYDPA  141 (190)
T ss_dssp             CCCEEEEEEESE-EEEEEEECCB-TCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE-EES--SCCCTT
T ss_pred             chhheeeeeeee-EEEEEEeecc-ccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEE-ecC--CccCcc
Confidence            357999999999 9999998652 111  112223  44688999999999999988875444443 332  444554

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.70  E-value=3.5  Score=33.04  Aligned_cols=62  Identities=10%  Similarity=-0.155  Sum_probs=43.9

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCC-CCCcceEEEEeeC--CcEEEeCCCCeEEEEecCCCCEEEEE
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQ-KHSQEEIVLGLRK--GDVIPVPLGSASWWYNNGSSDVVIVF   79 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~-~~~~~~~~~~l~~--GDv~~vP~G~~~~~~N~g~~~l~~~~   79 (325)
                      ....+++|++|+ ...-+|+-... ..-.+.....|..  +..++||+|.+|=++-..+....++.
T Consensus        71 ~q~Klv~~i~G~-I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~  135 (184)
T d2ixha1          71 AQGKLVRATLGE-VFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYK  135 (184)
T ss_dssp             CCCEEEEEEESE-EEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhheecceeeeE-EEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEec
Confidence            457999999999 99999984420 0001334567776  55899999999999988655444443

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=82.16  E-value=3.4  Score=33.41  Aligned_cols=72  Identities=10%  Similarity=-0.038  Sum_probs=48.8

Q ss_pred             cceeeccccCCCCeEEEEE-eCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEEecCCCCEEEEE
Q 020545            7 VHIIVCLTENDLHVIPIII-PCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWYNNGSSDVVIVF   79 (325)
Q Consensus         7 ~~~~~~p~h~~a~ei~yV~-~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~N~g~~~l~~~~   79 (325)
                      ++++=-.|....+.+++|+ .|+ ...-+++-.....-.+.....|..++.++||+|.+|=++-..+.....+.
T Consensus        66 kgvlRGlH~q~~~k~v~~~~~G~-i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~  138 (194)
T d1nxma_          66 KNVLRGLHAEPWDKYISVADGGK-VLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYL  138 (194)
T ss_dssp             TTBEEEEEECSSCEEEEECSSCC-EEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             eeEEEEEEeccchhhhhhccccc-eeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEe
Confidence            4556666755556777665 588 88888865321111234467899999999999999999888765444443

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.95  E-value=1.2  Score=33.01  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=31.8

Q ss_pred             CCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEE
Q 020545          213 DSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLL  248 (325)
Q Consensus       213 ~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~  248 (325)
                      .++.+.++++|+.++...+++|+...-..+.+||++
T Consensus        29 ~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~   64 (134)
T d2oz6a2          29 RCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF   64 (134)
T ss_dssp             BCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             cCCEEEEEEEcccceeeeecccccceeeeccCCCcc
Confidence            378999999999999999999887666788999998

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.88  E-value=1.4  Score=32.30  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             CCCEEEEEEeCcEEEEEEeCCCceEEeEEecCccEE
Q 020545          213 DSVQVFYVVKGSGKAQIVGLNAKLVLDSEVEAGQLL  248 (325)
Q Consensus       213 ~A~ei~yV~~G~~~~~vv~p~g~~~~~~~l~~Gdv~  248 (325)
                      .++.+.+|++|..++...+++|+...-..+.+||++
T Consensus        30 ~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~   65 (132)
T d1i5za2          30 KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFI   65 (132)
T ss_dssp             BCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEE
T ss_pred             CCCEEEEEEEccceeeeccccchhhhhhhhCccccc
Confidence            478999999999999999999887666788999987

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=81.66  E-value=6.1  Score=31.42  Aligned_cols=68  Identities=12%  Similarity=0.016  Sum_probs=45.5

Q ss_pred             cc-cCCCCeEEEEEeCCeEEEEEEcCCCCCCC--cceEEEEeeCCcEEEeCCC-CeEEEEecCC-CCEEEEEEe
Q 020545           13 LT-ENDLHVIPIIIPCELGVAGMVLPNDQKHS--QEEIVLGLRKGDVIPVPLG-SASWWYNNGS-SDVVIVFVG   81 (325)
Q Consensus        13 p~-h~~a~ei~yV~~G~~g~~~~v~~~~~~~~--~~~~~~~l~~GDv~~vP~G-~~~~~~N~g~-~~l~~~~~~   81 (325)
                      +| |.++..++.|++|+ .....-........  ....+..+++||+.++... -.|-+.|.+. +.++-+=+.
T Consensus        81 iHDH~~~~~~~~vl~G~-l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~~~avsLHvY  153 (186)
T d3elna1          81 IHDHTDSHCFLKLLQGN-LKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLY  153 (186)
T ss_dssp             EECCTTCEEEEEEEESC-EEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSSCCEEEEEEE
T ss_pred             CccCCCCcEEEEEcccc-eEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCCCCeEEEEEe
Confidence            35 76789999999999 77776542210000  1123568999999988664 4899999874 565555443

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=81.54  E-value=0.85  Score=39.90  Aligned_cols=41  Identities=22%  Similarity=0.322  Sum_probs=32.4

Q ss_pred             CCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEEEeCCCCeEEEE
Q 020545           17 DLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVIPVPLGSASWWY   68 (325)
Q Consensus        17 ~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~~vP~G~~~~~~   68 (325)
                      ++..+++|++|+ |.+..   ++      + ...|++||.++||++.-.|..
T Consensus       264 ~~~~il~vi~G~-~~i~~---~~------~-~~~l~~G~~~~ipa~~~~~~i  304 (315)
T d1qwra_         264 ESFLICSVIEGS-GLLKY---ED------K-TCPLKKGDHFILPAQMPDFTI  304 (315)
T ss_dssp             SSCEEEEEEEEE-EEEEE---TT------E-EEEEETTCEEEECTTCCCEEE
T ss_pred             CCcEEEEEEeCe-EEEEE---CC------E-EEEEecCcEEEEECCCCCEEE
Confidence            467999999999 88865   32      3 467999999999999865543

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.21  E-value=2.3  Score=31.03  Aligned_cols=45  Identities=16%  Similarity=0.108  Sum_probs=32.8

Q ss_pred             ceeeccccCCCCeEEEEEeCCeEEEEEEcCCCCCCCcceEEEEeeCCcEE
Q 020545            8 HIIVCLTENDLHVIPIIIPCELGVAGMVLPNDQKHSQEEIVLGLRKGDVI   57 (325)
Q Consensus         8 ~~~~~p~h~~a~ei~yV~~G~~g~~~~v~~~~~~~~~~~~~~~l~~GDv~   57 (325)
                      +.++.-.--..+.+++|++|. ..+...++++    .......+.+||.+
T Consensus        21 g~~i~~~g~~~~~iy~i~~G~-v~~~~~~~~g----~e~~l~~~~~G~~~   65 (132)
T d1i5za2          21 KSTLIHQGEKAETLYYIVKGS-VAVLIKDEEG----KEMILSYLNQGDFI   65 (132)
T ss_dssp             TCEEECTTSBCCEEEEEEECC-EEEEEECTTC----CEEEEEEECTTCEE
T ss_pred             CCEEEcCCCCCCEEEEEEEcc-ceeeeccccc----hhhhhhhhCccccc
Confidence            334444444578999999999 9998888775    23445678999988