Citrus Sinensis ID: 020558

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MSSSNIRDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIVAASLV
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccHHHHHHHHHHHccccEEEEEEccccccccccccEEEcccEEEEEcccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEcccccEEEEEEccccEEEEEEEEccccEEEEEEcccccEEEEEEccEEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEEEcEEEEEcccccccccccccEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccccccccEEEcEEEEEEEcccccccccHcHEEEEEEEEEEccHHHHHHHHccccHHEEEEEEcccccEEEEEEEccccEEEEEEccccccEEEEEcccEEEEEEcccccccEEEcccccEEEEEEEEcccccHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHcccccccEEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
msssnirdkdEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLEshkslsvnEFIIVFdlddshesnisHWVYTAISKRAQKFELnlfpalcwppasgiyefsqgcydylkspcglsrvksLRFLYFDTVNVTEEILEFFInncpnlddlrvgrsdnlLRLKVVGSLLQLKClhidhcnnleeleiscpsllsfkyfgpeiklhvknvPQLVDVLIggghgigkgkvigpivnyfpqlKTLELHVELNEEIlqfpecdlpelRHLMFMLVHLIVAASLV
Flexible Loop (DISEMBL)
msssnirdkdealkdwvsrlpddILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIVAASLV
Low Complexity Region (SEG)
MSSSNIRDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLiggghgigkgkvigpivNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIVAASLV
Disordered region (IsUnstruct)
************LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIVAA***
Disordered Region (DISOPRED)
*******************LPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIVAASLV
Disordered Region (DISEMBL)
**********EALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIVAASLV
Disordered Region (DISPRO)
**************DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIVAAS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSNIRDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLVHLIVAASLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
O23360	426	Putative F-box/LRR-repeat	no	no	0.827	0.629	0.295	7e-16
Q9SV82	409	FBD-associated F-box prot	no	no	0.867	0.687	0.284	2e-14
Q0WR05	457	F-box/LRR-repeat protein	no	no	0.716	0.507	0.268	2e-13
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.546	0.340	0.300	2e-12
Q9FWZ1	451	F-box/LRR-repeat protein	no	no	0.629	0.452	0.245	1e-11
Q8GW80	484	F-box/LRR-repeat protein	no	no	0.753	0.504	0.268	2e-11
Q9C8Y7	456	Putative F-box/FBD/LRR-re	no	no	0.608	0.432	0.242	3e-11
O22232	448	Putative F-box/LRR-repeat	no	no	0.558	0.404	0.264	9e-11
Q9FJU3	402	Putative FBD-associated F	no	no	0.833	0.671	0.260	1e-10
Q9T0F1	316	F-box protein At4g09920 O	no	no	0.719	0.737	0.277	2e-10

>sp|O23360|FBL93_ARATH Putative F-box/LRR-repeat protein At4g15060 OS=Arabidopsis thaliana GN=At4g15060 PE=4 SV=2

 Score = 84.7 bits (208), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 139/305 (45%), Gaps = 37/305 (12%)

Query: 15  DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIE 74
           D +SRLPDD+LV ++  L  K A  TS+LS RW++LW +   L +       N      E
Sbjct: 26  DKISRLPDDLLVKVLLFLPTKIAVSTSILSKRWEFLWMWLPKLEYH------NTNYSASE 79

Query: 75  EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDS-HESNISHWVYTAISKRAQKFELNLF 133
           E+RLR   ++N  L+ H++  +    + F L  S    NI  W+  A+ +  ++  +NLF
Sbjct: 80  EQRLR--SFINLNLQLHRAPIIESLRLKFSLGRSIKPQNIKQWIIIAVFRCVRELSINLF 137

Query: 134 PALCWP-PA---SGIYEFSQGCYDYLKSPC-----GLSRVKSLRFLYFDTVNVTEE-ILE 183
           P  C   PA   S +Y         LK         ++ + SL++L    V   +   L 
Sbjct: 138 PLYCIENPAKLPSSLYISKSLVILKLKDQILVDVPRMAYLPSLKYLLLKRVTYKDSNSLH 197

Query: 184 FFINNCPNLDDLRVGRSD--NLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFK- 240
             +++CP L +L V R +  +   L +  S LQ   L I    + +EL I+ PSL  FK 
Sbjct: 198 QLLSSCPVLKNLVVERDEYNHDETLSITVSSLQRLTLKISRGGSFDELVINTPSLKYFKL 257

Query: 241 --YFGP-EIKLH-------VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHV 290
             Y G  E +L         K++P+L +  I   +       IG  V     +K L L V
Sbjct: 258 TDYLGECETELDDDSYSYVFKDMPKLEEAHIDSTYP-----DIGKFVRSITSVKRLSLCV 312

Query: 291 ELNEE 295
           ++N E
Sbjct: 313 KVNAE 317

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana GN=At4g10400 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 152/334 (45%), Gaps = 53/334 (15%)

Query: 15  DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIE 74
           D +S LPD++LV I+S +  K A  TS+LS RW++LW + + L F + +     Y E+  
Sbjct: 2   DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKR-----YSES-- 54

Query: 75  EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSH--ESNISHWVYTAISKRAQKFEL-- 130
            E  R  C++++ L  H++  +  F +V  L DSH    +I  WV  A+S+  ++ ++  
Sbjct: 55  -EFKRLQCFLDRNLPLHRAPVIESFRLV--LSDSHFKPEDIRMWVVVAVSRYIRELKIYS 111

Query: 131 -------NLFPALCWPPAS-GIYEFSQGC-YDYLKSPCGLSRVKSLRFLYFDTVNVTEE- 180
                  N+ P+  +   S  I +   G   D  +  C    + SL+ L    V   ++ 
Sbjct: 112 SHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVC----LPSLKTLELKGVRYFKQG 167

Query: 181 ILEFFINNCPNLDDLRVGRS--DNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLS 238
            L+  + NCP L+DL V  S  DN+ +L V+   LQ   L         E  I  PSLLS
Sbjct: 168 SLQRLLCNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTPSS---REFVIDTPSLLS 224

Query: 239 FKYFGPEIKLH---VKNVPQL-----------VDVLIGGGHGIGKGKVIGPIVNY----- 279
           F+        H   ++N+P+L           +  LIG    + K   I   V Y     
Sbjct: 225 FQLVDRNDNSHTFLIENMPKLREAYINVPFADIKSLIGSITSV-KRLAISSEVGYGEGFI 283

Query: 280 FPQLKTLELHVELNEEILQFPECDLPELRHLMFM 313
           F  L+ L L  + +  +L +   + P LR LM +
Sbjct: 284 FNHLEELTLWNKYSSNLLVWFLKNSPNLRELMLV 317

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WR05|FBL39_ARATH F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 21/253 (8%)

Query: 14  KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETI 73
           KD +SRLPD++L  I+S ++ KEA  TSVLS RWK ++   SNL+ D  + +    +  I
Sbjct: 4   KDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNRI 63

Query: 74  EEERLRYMCWVNKVLESHKSLSVNEFII---VFDLDDSHESNISHWVYTAISKRAQKFEL 130
           E  R  YM +V+K+L++ +  S+ +  +   V     +  S I  W+   +       ++
Sbjct: 64  EIHR-NYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVMDLDV 122

Query: 131 NLFPALCWPPASGIYEFSQGCYDYLKSPCGLS-------RVKSLRFLYFDTVNVT--EEI 181
            +      PP   +  F       L+   G +        +  LR L  D+VN      +
Sbjct: 123 FITLKGKSPPVPAMI-FKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGHNV 181

Query: 182 LEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKY 241
           +   I+ CP L++L V      +      S   LK LHI        + +  P+L+ +K+
Sbjct: 182 VGTLISRCPVLEELVV-EERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYYKH 240

Query: 242 FG------PEIKL 248
            G      P +KL
Sbjct: 241 SGYVLGKYPNVKL 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 16/193 (8%)

Query: 14  KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETI 73
           +D +S LP+ ++ +I+S L  KEAA TSVLS +W+YL+ Y +NL+FD S       +  +
Sbjct: 6   RDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKSDV 65

Query: 74  EEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLF 133
           E  R  +M +V++VL    + SVN+F +     D   + ++ W+   + +   + +L++ 
Sbjct: 66  ELSR-SFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDLSI- 123

Query: 134 PALCWPPASGIYEFSQGCYDYLKSPCG-----LSR----VKSLRFLYFDTVNVTEEILEF 184
             L +P  S I+  S+        P       L R    +  L+ LY D V+V E    F
Sbjct: 124 --LEYPLPSEIF-VSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERGFGF 180

Query: 185 --FINNCPNLDDL 195
              ++ CP L++L
Sbjct: 181 VKLLSGCPVLEEL 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 49/253 (19%)

Query: 5   NIRDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKL 64
           ++R K     DW+S+LPD +L  ++  L  K+  +TSVLS RW+ LW +   L+ D +  
Sbjct: 8   HVRAKGSDEVDWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLDNTDF 67

Query: 65  LVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESN---ISHWVYTAI 121
                     +E   ++ +V+  L+ +    + +FI+ +D DD ++ +   I  W+ T +
Sbjct: 68  ----------QEFNTFLSFVDSFLDFNSESFLQKFILKYDCDDEYDPDIFLIGRWINTIV 117

Query: 122 SKRAQKFELNLFPALCWPPA--SGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTE 179
           +++ Q  ++       W     S IY         L   CGL+ + S  F+   ++ V +
Sbjct: 118 TRKVQHIDVLDDSYGSWEVQLPSSIYTCESLVSLKL---CGLT-LASPEFVSLPSLKVMD 173

Query: 180 EI---------LEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE 230
            I         LE  I  CP L+ L + RS                      C+ +E L 
Sbjct: 174 LIITKFADDMGLETLITKCPVLESLTIERS---------------------FCDEIEVLR 212

Query: 231 ISCPSLLSFKYFG 243
           +   SLL F +  
Sbjct: 213 VRSQSLLRFTHVA 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW80|FBL65_ARATH F-box/LRR-repeat protein At3g59210 OS=Arabidopsis thaliana GN=At3g59210 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 28/272 (10%)

Query: 10  DEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVY 69
           D+  KD ++ LPD++L  I+S L+ KEAA TS+LS RW+YL+    NL+FD   +L +++
Sbjct: 2   DDCSKDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFD---VLPSLH 58

Query: 70  EETI--EEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQK 127
            E    ++++  ++ +V++VL+      +N+F +    D   + ++  W+   +      
Sbjct: 59  PEVAMQDQDQTSFIDFVDRVLKLRGKDHINKFSLKCG-DGIEDEDVFPWILNTLRHGVSD 117

Query: 128 FELNLFPALC-WPPASGIYEFSQGCYDYLK-SPCGLSRVK-------SLRFLYFDTVNVT 178
             L++ P+L  W P+     F+      LK  P    RVK        L+ L  D+V   
Sbjct: 118 LSLHVSPSLVYWLPSK---VFASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFE 174

Query: 179 EEILEF--FINNCPNLDDLRV-----GRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI 231
           E  + F   ++ CP L++L +      R D+      +   L L C H     N + +  
Sbjct: 175 EGKIGFAKLLSGCPVLEELSLLNLAWDRWDSCSVSSKILKRLTLYCAH--SSRNPKSVSF 232

Query: 232 SCPSLLSFKYFGPEIKLHVK-NVPQLVDVLIG 262
             P+++ F+Y       + K N   LV+  IG
Sbjct: 233 DTPNVVYFEYSDNIANKYPKVNFDSLVEASIG 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8Y7|FDL8_ARATH Putative F-box/FBD/LRR-repeat protein At1g66300 OS=Arabidopsis thaliana GN=At1g66300 PE=4 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 42/239 (17%)

Query: 15  DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIE 74
           DWV  LP+ ++ +++  L+ K+  +  VLS++W+YLW Y   L+ D S            
Sbjct: 29  DWVRDLPESLICHVLLNLSTKDVIKNCVLSTKWRYLWRYVPGLDLDCSDF---------- 78

Query: 75  EERLRYMCWVNKVLESHKSLSVNEFIIVFDLD-----DSHESNISHWVYTAISKRAQKFE 129
            E   ++ +V++ L ++    +N+F + FD D     ++  + ++ W+   + ++ Q  +
Sbjct: 79  TEYNTFVSFVDRFLSTNTESYLNKFKLGFDCDLVGDEETGNAQMARWINDVVKRKVQHLD 138

Query: 130 LNLFPALCWPPASGIYE---FSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEI-LEFF 185
           L  + AL  PP   + +     + C   L  P     + S++ +  D V    ++ LE  
Sbjct: 139 LE-WGALEIPPIVYVCKSLVSLKLCGVILPIP-EFVCLPSVKVIVLDWVKFANDLALEML 196

Query: 186 INNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGP 244
           I+ C  L  L + RS+N                     +N++ L +   SLLSF Y GP
Sbjct: 197 ISGCLVLKSLTLCRSNN---------------------DNVKVLRVRSQSLLSFNYNGP 234

Arabidopsis thaliana (taxid: 3702)

>sp|O22232|FBL52_ARATH Putative F-box/LRR-repeat protein At3g44810 OS=Arabidopsis thaliana GN=At3g44810 PE=4 SV=2

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 38/219 (17%)

Query: 20  LPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLL-VNVYEETIEEERL 78
           LPD++LV+++S L  K+AA TSVLS RW+ L+    NL+FD S +    V E+ +++ + 
Sbjct: 12  LPDELLVHVLSSLETKQAASTSVLSKRWRTLFAVRRNLDFDDSIISHPEVGEQNMDDVQE 71

Query: 79  RYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTA--------------ISKR 124
            +  +V+K L    S+ +N+F +++  D   +  +  W+ TA              +++R
Sbjct: 72  SFRDFVDKRLAFQGSVPINKFSLIYG-DKHDDVRVDRWINTALEHGVSELHLCLTSVTRR 130

Query: 125 AQKFELNLFPALCWPPAS------GIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVT 178
             +F  N+F +      +       +Y  S  C   LK       +  L  ++FD +  +
Sbjct: 131 LHRFPSNVFRSTTLVKLTLGTNLFIVYFPSDTCLPVLK-------ILVLDSIWFDRIKFS 183

Query: 179 EEILEFFINNCPNLDDLRVGRSD-----NLLRLKVVGSL 212
             +L      CP L+DL + +       N++  K V SL
Sbjct: 184 NVLLA----GCPALEDLTIDQKSFPGLPNVVSSKTVKSL 218

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJU3|FBD28_ARATH Putative FBD-associated F-box protein At5g56690 OS=Arabidopsis thaliana GN=At5g56690 PE=4 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 132/292 (45%), Gaps = 22/292 (7%)

Query: 17  VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEE 76
           +S LPDD+LV I++ L  K A  TSVLS +W++LW +   L +D    + + +      +
Sbjct: 4   ISGLPDDLLVKILAFLPTKVAISTSVLSKQWRFLWMWLPKLKYDDYDDITDGFNSVSAFQ 63

Query: 77  RLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPAL 136
              Y  ++ K L  H++  +    + F        ++  WV  A+S+  ++  +  +   
Sbjct: 64  --TYRDFIAKNLPLHRAPIIESLSLGFRCGTLQPEDLKSWVEVAVSRSVRELSILAYYRN 121

Query: 137 CWP-PASGIYEFS-----QGCYDYLKSPCGLSRVKSLRFLYFDTVN-VTEEILEFFINNC 189
            +   +S +Y        +G    +  P  +  + SLR L    V  + E+ L   ++ C
Sbjct: 122 NYALSSSSLYTCKSLVTLKGFNIRVDVPPTVCLLPSLRTLELKRVRYLNEDSLRMLLSFC 181

Query: 190 PNLDDLRVGR--SDNLLRLKV-VGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFG--P 244
           P L+ L + R  +DNL  L V V SL +L       C++ ++  I  PSL  FK F    
Sbjct: 182 PVLEYLSIERHDNDNLRGLVVDVPSLRRLSLTSYTGCSS-DDYVIVTPSLKYFKAFDYRS 240

Query: 245 EIKLH-VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEE 295
           EI  + ++ +P+L +  I       K      +  YF  +K L L V+ N +
Sbjct: 241 EISSYKIEKIPELEEADISIERNPEK------LFVYFKSIKCLSLQVDFNSK 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0F1|FB226_ARATH F-box protein At4g09920 OS=Arabidopsis thaliana GN=At4g09920 PE=4 SV=2

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 34/267 (12%)

Query: 15  DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIE 74
           D +  LPD++LV I+S +  K A  TS+LS RW++LW + + L F + +     Y E+  
Sbjct: 2   DRIIGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKR-----YSES-- 54

Query: 75  EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSH--ESNISHWVYTAISKRAQKFEL-- 130
            E  R  C++++ L  H++  +  F +V  L DSH    +I  WV  A+S+  ++ ++  
Sbjct: 55  -EFKRLQCFLDRNLPLHRAPVIESFRLV--LSDSHFKPEDIRMWVVVAVSRYIRELKIYS 111

Query: 131 -------NLFPALCWPPAS-GIYEFSQGC-YDYLKSPCGLSRVKSLRFLYFDTVNVTEE- 180
                  N+ P+  +   S  I +   G   D  +  C    + SL+ L    V   ++ 
Sbjct: 112 SHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVC----LPSLKTLELKGVRYFKQG 167

Query: 181 ILEFFINNCPNLDDLRV--GRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLS 238
            L+  + NCP L+DL V   R D++    V+   LQ   L++    NLE   I   + L 
Sbjct: 168 SLQRLLCNCPVLEDLFVLLLRCDDIGMFIVIVPSLQRLSLYLSPRCNLEGFVIVLDTPLE 227

Query: 239 -FKYFGPEIKLH---VKNVPQLVDVLI 261
            FK        H   ++N+P+L    +
Sbjct: 228 YFKLVDRNYDRHPYMIENMPKLTSAYV 254

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
255544812	464	ubiquitin-protein ligase, putative [Rici	0.947	0.661	0.370	2e-44
255540581	457	ubiquitin-protein ligase, putative [Rici	0.953	0.676	0.365	3e-42
449440973	475	PREDICTED: putative FBD-associated F-box	0.845	0.576	0.390	2e-40
302142991	402	unnamed protein product [Vitis vinifera]	0.922	0.743	0.339	6e-36
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.873	0.633	0.305	3e-30
356544606	444	PREDICTED: putative F-box protein At3g58	0.768	0.560	0.355	2e-27
297736820	487	unnamed protein product [Vitis vinifera]	0.888	0.591	0.293	3e-23
147865783	1789	hypothetical protein VITISV_020815 [Viti	0.888	0.160	0.293	4e-23
357155585	449	PREDICTED: LOW QUALITY PROTEIN: putative	0.839	0.605	0.303	7e-22
357119372	497	PREDICTED: uncharacterized protein LOC10	0.753	0.490	0.301	1e-20

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/321 (37%), Positives = 184/321 (57%), Gaps = 14/321 (4%)

Query: 7   RDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASN-LNFDAS--- 62
           R ++  + + +S+LP+D+L+NI+SRLT+KEAARTS+LS+RW++LWTY +  ++FDAS   
Sbjct: 25  RARNGNISEHISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDFDASLTM 84

Query: 63  -KLLVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAI 121
             L + +  ++++ ER  ++ WVN+VL SH+  ++    I FDLD      I  W+  A+
Sbjct: 85  WYLQLGLGSKSLDMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMYEIDSWITIAM 144

Query: 122 SKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEI 181
            KR ++ E++L         +G Y F  G  +        S   SL+ L  + V+VT E 
Sbjct: 145 QKRVKRLEIDLTNIEPSIKTTGSYAFPSGLLND-------SSFSSLKTLQLNMVDVTGEA 197

Query: 182 LE-FFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFK 240
           L+   ++ CP L+ L +  S +L+ LKV GS L+LK L +  CNNL+ LEI+  SL+SFK
Sbjct: 198 LQHLLLSWCPLLEVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLEITAASLVSFK 257

Query: 241 YFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFP 300
           Y+GP I L  K+VP LVD   GG       + +     Y  QL+TL   V     + +FP
Sbjct: 258 YYGPLIGLPFKSVPNLVDASFGGPFCQLTIENLYQFSLYILQLETLRFDVGSAYLMREFP 317

Query: 301 ECDLPELRHLMFMLVHLIVAA 321
             + P L ++  + V   V+A
Sbjct: 318 T-NFPILSNVKHLEVTTAVSA 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 186/326 (57%), Gaps = 17/326 (5%)

Query: 4   SNIRDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASK 63
           S++   +EA +D +S LP++IL +I+S LT +EA+RTSVLS RW+ LWT  S+LNFD +K
Sbjct: 8   SSVTSVEEAKEDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTLTSSLNFDCTK 67

Query: 64  LLVNVYEE---TIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTA 120
           + +    +    +  ER R+  WV +VLE +K  +++EFI+ FDL  +   ++  W+  A
Sbjct: 68  IALGKKLDDRFALRSERTRFAMWVKRVLEVYKDSNLDEFIVSFDLTCNSRRSLDKWMNFA 127

Query: 121 ISKRAQKFELNLFP--ALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVT 178
           +SK  ++ E++L P  +  +      Y F   CY +++ P GLS + SLR L    VN+T
Sbjct: 128 MSKTLKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRGPEGLSNISSLRSLCLRYVNMT 187

Query: 179 EEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLS 238
            E++E F+ NCP L+ L V  +  L  LKV  S L+LK L I  C +L+  EI  P+L++
Sbjct: 188 GEVVEHFLLNCPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLKNFEICAPNLVT 247

Query: 239 F------KYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTL-----E 287
                  +Y G  +KL   ++P L+D+ +GG          G   + F QL TL     E
Sbjct: 248 ILYNQGGRYNGRRMKLQAVHLPHLLDLHLGGPELSITEDFFGACSSSFSQLMTLKIVVTE 307

Query: 288 LHVELNEEILQFPEC-DLPELRHLMF 312
           + ++  +  L+FP+  +L  LRHL F
Sbjct: 308 VRMQECQVRLKFPKFPELTNLRHLGF 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 166/287 (57%), Gaps = 13/287 (4%)

Query: 15  DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVY--EET 72
           D +S LP DILV I+S L LKEAARTS LS +W+ LW++   LNFDA K L+++   +E 
Sbjct: 45  DSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLWSFIPCLNFDAHKKLLDLQFTDEN 104

Query: 73  IEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNL 132
           ++ ER +++ WVN+V++S+K  ++    I F+LD S + ++  WV  A+  + + FELNL
Sbjct: 105 LKSERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVDRWVQFAMQWKLKMFELNL 164

Query: 133 FPALCWPPASGIY------EFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEILEFFI 186
             +      SGIY      + S G  +        S   SL+ L    VNV  E LE F+
Sbjct: 165 SDSY----DSGIYSPCSFPQLSDGPKENFPR-FMFSNSSSLKTLKLIAVNVGGEALECFL 219

Query: 187 NNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEI 246
            N P L+ L V  S  LL L+VVG+ L+L+ L +  CN LE LE+S P+L SFKY GP +
Sbjct: 220 TNSPLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSAPNLESFKYVGPWL 279

Query: 247 KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN 293
            + +KN P+L++   G   G+        + +Y  QL+ L L +E++
Sbjct: 280 SMPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILDLEVD 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 183/339 (53%), Gaps = 40/339 (11%)

Query: 6   IRDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDA--SK 63
           I D  +  +D +S LPD+IL++I+SRLTL+EAA TSVLS RW+YLWTY S LNFD+  +K
Sbjct: 13  ISDDGDFGEDLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTYTSRLNFDSVVNK 72

Query: 64  LLVNVYEETIEEE------RLRYMCWVNKVLESHK-SLSVNEFIIVFDLDDSHESNISHW 116
           ++   +   +         R +Y+ WV+KVL  ++   +++EF + FDL     S+I  W
Sbjct: 73  IVRRSHSFALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKW 132

Query: 117 VYTAISKRAQKFELNLFPALCW----PPASGIYEFSQGCYDY---------LKSPCGL-S 162
              A+SK  +  E +            P   +  + Q  Y +          + P G+  
Sbjct: 133 FEFAMSKNVKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFV 192

Query: 163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDH 222
             KSL+ L   ++NV+ E +E+F++NCP L+ L V  S++L+ L+V G  + L+ L I  
Sbjct: 193 GFKSLKTLSLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVK 252

Query: 223 CNNLEELEISCPSLLSFKYFGPEI------KLHVKNVPQLVDVLIGGGH-GIGKGKVIGP 275
           C++++ +EI   +L+SF Y G          +H++N P LV+VL G G  G  K  ++  
Sbjct: 253 CSSIQTIEICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLL-K 311

Query: 276 IVNYFPQLKTLELHVELNEEILQFPECD----LPELRHL 310
           + +   QL+ L+L V+       FPE      LP+LR+L
Sbjct: 312 LSSCVHQLQILQLTVDHF-----FPERSRAYLLPKLRNL 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 167/324 (51%), Gaps = 41/324 (12%)

Query: 3   SSNIRDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYAS-NLNFDA 61
           S+N +D +E   D +++LPD I +NI++ L +KEAARTS+LS +WK LWTY S  L F+ 
Sbjct: 16  SNNEKDYEE---DIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFSGTLEFEG 72

Query: 62  SKLLVNVYEE---------------TIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLD 106
           S ++ ++ ++                 + ER  Y  W+N++L S +  ++      F + 
Sbjct: 73  SPIMKDMIKDLKKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGLKFWFPMK 132

Query: 107 DSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKS 166
           +   S+I +W++ A+ K+ QK EL     + +     I++              + R  S
Sbjct: 133 NV--SDIDNWIHFAVQKKVQKLELYFGHTIVYVLPLHIFK--------------VERFNS 176

Query: 167 LRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNL 226
           L  L   ++ VT+E+LE+ + NC  L+ L +  S     +KV GS L+LKCL +  C  L
Sbjct: 177 LCVLRMKSITVTDEMLEYLMCNCQLLETLSLVDSRVPKTMKVSGSSLKLKCLELVRCWEL 236

Query: 227 EELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTL 286
            ++EI    L+SFKY+G  ++   K+VP L +   GG        V     ++ PQ+K L
Sbjct: 237 TKIEIFAEKLVSFKYYGSHLETEFKSVPCLEEASFGGSF------VEFVRESFLPQIKVL 290

Query: 287 ELHVELNEEILQFPECDLPELRHL 310
           +L +  N   + +    LP+L++L
Sbjct: 291 KLDITQNSPEVIYWLSQLPKLKNL 314

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 143/267 (53%), Gaps = 18/267 (6%)

Query: 7   RDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASN-LNFDASKLL 65
           R++ E  +D +S +PDDIL +I+SRLTLKEAARTSVL+++W+Y WT+ S  L+FD S   
Sbjct: 3   RNRFENNRDIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLRN 62

Query: 66  VNVYEETIE---------EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHW 116
            ++  E +           E  R+M  +  V++S KS S+    I  DL D     ++ W
Sbjct: 63  FHLRREHVGILTKCNVFVYEWERFMTRMANVMKSLKSSSLQGLRICMDLGDPWR--VAEW 120

Query: 117 VYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVN 176
           V  A  K  Q  +L+       P     YE S      +    G   +KSL  L   +V+
Sbjct: 121 VKYAAEKHVQTLDLDFSYHFSVP----FYEISLTIVHNVFPSRGYE-MKSLCNLRLSSVD 175

Query: 177 VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSL 236
           V+ E++E  + +CP L+ + V  S  L+RLKV G  L+LK L +  C  + +L+I   +L
Sbjct: 176 VSGEVIEGLLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVEC-RIMDLDIYAVNL 234

Query: 237 LSFKYFGPEIKLHVKNVPQLVDVLIGG 263
           ++F+Y G   K   +NVP LV+   GG
Sbjct: 235 VTFRYQGKYGKFKFQNVPSLVEASFGG 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736820|emb|CBI26021.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 147/327 (44%), Gaps = 39/327 (11%)

Query: 14  KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLL-------- 65
           +DW+  LPDDIL  IIS L LKEA RT +LS RW+ +WT  S L FDA+ +L        
Sbjct: 15  EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSTS 74

Query: 66  --VNVYEETIEEERLRYMCWVNKVL-ESHKSLSVNEFIIVFDLDDSHESNISHWVYTAIS 122
              N  E   + +  +++  V++ +    +   +N F I F L     S+I  W+  A+ 
Sbjct: 75  MSGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSHIDQWITCAVM 134

Query: 123 KRAQKFELNLFPALCW--------PPASGIYEFSQGCYDYLKSPCGLSRVK--------- 165
           K  +  +L+L     +          A  IYEF    +      C L  ++         
Sbjct: 135 KGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASCHLSAL 194

Query: 166 -------SLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCL 218
                  SL  +    VN++++ L+  ++ C +L+ L +   + L+ L      LQLK L
Sbjct: 195 PSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNGLVNLSFSALNLQLKFL 254

Query: 219 HIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQL----VDVLIGGGHGIGKGKVIG 274
            I +C  LE +EI    L++FKY G       KNVP+L    ++  I      G    + 
Sbjct: 255 SIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYALT 314

Query: 275 PIVNYFPQLKTLELHVELNEEILQFPE 301
                 PQL+TL+L   L  + LQ PE
Sbjct: 315 RFPQDLPQLETLKLLSVLTLKKLQLPE 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865783|emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 147/327 (44%), Gaps = 39/327 (11%)

Query: 14   KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLL-------- 65
            +DW+  LPDDIL  IIS L LKEA RT +LS RW+ +WT  S L FDA+ +L        
Sbjct: 1317 EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSXS 1376

Query: 66   --VNVYEETIEEERLRYMCWVNKVL-ESHKSLSVNEFIIVFDLDDSHESNISHWVYTAIS 122
               N  E   + +  +++  V++ +    +   +N F I F L     S+I  W+  A+ 
Sbjct: 1377 MSGNQPELNSQMQSXKFVERVDQFMYYRSQGPKINSFSIHFPLGKEFMSHIDQWITCAVM 1436

Query: 123  KRAQKFELNLFPALCW--------PPASGIYEFSQGCYDYLKSPCGLSRVK--------- 165
            K  +  +L+L     +          A  IYEF    +      C L  ++         
Sbjct: 1437 KGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASCHLSAL 1496

Query: 166  -------SLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCL 218
                   SL  +    VN++++ L+  ++ C +L+ L +   + L+ L      LQLK L
Sbjct: 1497 PSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLERLSLCVCNGLVNLSFSALNLQLKFL 1556

Query: 219  HIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQL----VDVLIGGGHGIGKGKVIG 274
             I +C  LE +EI    L++FKY G       KNVP+L    ++  I      G    + 
Sbjct: 1557 SIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYALT 1616

Query: 275  PIVNYFPQLKTLELHVELNEEILQFPE 301
                  PQL+TL+L   L  + LQ PE
Sbjct: 1617 RFPQDLPQLETLKLLSVLTLKKLQLPE 1643

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357155585|ref|XP_003577168.1| PREDICTED: LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At5g54820-like [Brachypodium distachyon]

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 151/306 (49%), Gaps = 34/306 (11%)

Query: 20  LPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEE--- 76
           LP+DIL  I+SRLTLK+A RTSV+SS W+++W Y   L F  S +L +  +     +   
Sbjct: 13  LPEDILSIIVSRLTLKDAVRTSVVSSDWRHIWKYHPILRFVISSVLGSKAKRKRSSDQHK 72

Query: 77  ---RLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLF 133
              R R++  V+ +L     L+V++  + FDL + H  +I  WVY AI+  A+   LN  
Sbjct: 73  RRLRKRFIDRVSYILSKXSGLAVSKLAVKFDLREEHADHIDGWVYFAIASMAKILTLNFS 132

Query: 134 PALCWPPASGI--YEFSQGCYDYLKS---------P----CGLSRVKSLRFLYFDTVNVT 178
           P L +        + F+     YL++         P    CG +   +L+ L  D V V 
Sbjct: 133 PYLGYENHYTFPCHLFNSKNASYLQALRLDSVNLVPSIDFCGFA---NLKMLALDHVLVM 189

Query: 179 EEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLS 238
           ++ L++F++ CP L+ L + R            L +LK L + +C  ++ +E + P+L +
Sbjct: 190 QD-LQYFLSKCPALEWLSIQRCYLKCNCHASAPLGRLKYLCVKNC-EVDRIEFAAPNLNT 247

Query: 239 FKYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGK---VIGPIVNYFPQLKTLELHVELNEE 295
           F+Y G +I +      +L   +I   H IG      V   + N  P ++T  LHVE   +
Sbjct: 248 FEYRGYQILIKFHECSKLKMAII---HIIGHSTLEYVFTGLPNAVPHVET--LHVETFVD 302

Query: 296 ILQFPE 301
           I + PE
Sbjct: 303 IPKIPE 308

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119372|ref|XP_003561416.1| PREDICTED: uncharacterized protein LOC100838353 [Brachypodium distachyon]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 125/269 (46%), Gaps = 25/269 (9%)

Query: 17  VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEE 76
           +S LP D+L +++S+L ++EA +TS+LS +WKY+W + ++LNF+   ++  V   T E  
Sbjct: 26  LSDLPMDVLCSVLSQLPMEEAVKTSILSCQWKYIWCHQTSLNFNCKTIMPRVAWSTREAV 85

Query: 77  RLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLF--- 133
           R  ++  VN VL       V +  I FDLDD H +++  WV  AI+ + +   L L+   
Sbjct: 86  RQEFIKRVNAVLRQRNGAGVEKMNIRFDLDDRHAADVDRWVNLAIASKTKVLTLELWLDS 145

Query: 134 PALCW------PPASGIYEFSQGCYD---------------YLKSPCGLSRVKSLRFLYF 172
           PA+ +      P     Y F    +D                LK P       +L+ LY 
Sbjct: 146 PAIVYRLRVSDPERMEPYNFPFQLFDECNGSHLRSLHLSTVSLKLPTNFKGFLNLKKLYL 205

Query: 173 DTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS 232
             V++T+E L  F++ C  L+ L V     L  L +  S  QLK L I  C  L ++ ++
Sbjct: 206 SGVSITDEDLGHFVSKCSVLEFLGVLFCTMLETLTIPHSANQLKHLQIRCCPLLHKVRLN 265

Query: 233 CPSLLSFKYFGPEIKLHVKNVPQLVDVLI 261
             SL    Y GP           L D  I
Sbjct: 266 Y-SLKMLVYKGPVTYFVSDRTSSLTDACI 293

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.694	0.550	0.302	4.6e-16
TAIR|locus:2052351	737	AT2G42730 [Arabidopsis thalian	0.694	0.305	0.286	5.6e-14
TAIR|locus:2081172	484	AT3G59210 "AT3G59210" [Arabido	0.694	0.464	0.266	1.3e-13
TAIR|locus:2165021	402	AT5G56690 "AT5G56690" [Arabido	0.833	0.671	0.253	4.9e-13
TAIR|locus:2140538	316	AT4G09920 "AT4G09920" [Arabido	0.700	0.718	0.288	8.4e-13
TAIR|locus:2039488	405	AT2G26860 "AT2G26860" [Arabido	0.666	0.533	0.294	9.8e-13
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.700	0.436	0.272	1.2e-12
TAIR|locus:2026761	451	AT1G69630 [Arabidopsis thalian	0.734	0.527	0.254	1.5e-12
TAIR|locus:2025812	486	AT1G80960 "AT1G80960" [Arabido	0.663	0.442	0.270	7.2e-12
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.567	0.410	0.314	1e-11

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 4.6e-16, P = 4.6e-16
 Identities = 79/261 (30%), Positives = 130/261 (49%)

Query:    15 DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIE 74
             D +S LPD++LV I+S +  K A  TS+LS RW++LW + + L F + +     Y E+ E
Sbjct:     2 DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKR-----YSES-E 55

Query:    75 EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSH--ESNISHWVYTAISKRAQKFEL-- 130
              +RL+  C++++ L  H++  +  F +V  L DSH    +I  WV  A+S+  ++ ++  
Sbjct:    56 FKRLQ--CFLDRNLPLHRAPVIESFRLV--LSDSHFKPEDIRMWVVVAVSRYIRELKIYS 111

Query:   131 -------NLFPALCWPPAS-GIYEFSQGCY-DYLKSPCGLSRVKSLRFLYFDTVNVTEE- 180
                    N+ P+  +   S  I +   G   D  +  C    + SL+ L    V   ++ 
Sbjct:   112 SHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVC----LPSLKTLELKGVRYFKQG 167

Query:   181 ILEFFINNCPNLDDLRVGRS--DNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLS 238
              L+  + NCP L+DL V  S  DN+ +L V+   LQ   L      +  E  I  PSLLS
Sbjct:   168 SLQRLLCNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTP---SSREFVIDTPSLLS 224

Query:   239 FKYFGPEIKLH---VKNVPQL 256
             F+        H   ++N+P+L
Sbjct:   225 FQLVDRNDNSHTFLIENMPKL 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052351 AT2G42730 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 70/244 (28%), Positives = 114/244 (46%)

Query:    14 KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETI 73
             KD +SRLPD++L  I+S ++ KEA  TSVLS RWK ++   SNL+ D  + +    +  I
Sbjct:     4 KDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNRI 63

Query:    74 EEERLRYMCWVNKVLESHKSLSVNEFIIVFDLD---DSHESNISHWVYTAISKRAQKFEL 130
             E  R  YM +V+K+L++ +  S+ +  +   +     +  S I  W+   +       +L
Sbjct:    64 EIHR-NYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVM--DL 120

Query:   131 NLFPALCW--PPASGIYEFSQGCYDYLKSPCG----LSRVKSL---RFLYFDTVNVT--E 179
             ++F  L    PP   +  F       L+   G    LS+  SL   R L  D+VN     
Sbjct:   121 DVFITLKGKSPPVPAMI-FKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGH 179

Query:   180 EILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSF 239
              ++   I+ CP L++L V      +      S   LK LHI        + +  P+L+ +
Sbjct:   180 NVVGTLISRCPVLEELVV-EERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYY 238

Query:   240 KYFG 243
             K+ G
Sbjct:   239 KHSG 242

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2081172 AT3G59210 "AT3G59210" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 66/248 (26%), Positives = 122/248 (49%)

Query:    10 DEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVY 69
             D+  KD ++ LPD++L  I+S L+ KEAA TS+LS RW+YL+    NL+FD   +L +++
Sbjct:     2 DDCSKDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFD---VLPSLH 58

Query:    70 EETI--EEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQK 127
              E    ++++  ++ +V++VL+      +N+F +    D   + ++  W+   +      
Sbjct:    59 PEVAMQDQDQTSFIDFVDRVLKLRGKDHINKFSLKCG-DGIEDEDVFPWILNTLRHGVSD 117

Query:   128 FELNLFPALC-WPPASGIYEFSQGCYDYLK-SPCGLSRVK-------SLRFLYFDTVNVT 178
               L++ P+L  W P+     F+      LK  P    RVK        L+ L  D+V   
Sbjct:   118 LSLHVSPSLVYWLPSK---VFASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFE 174

Query:   179 EEILEF--FINNCPNLDDLRVGRS--DNLLRLKVVGSLLQLKCLHIDHCN-NLEELEISC 233
             E  + F   ++ CP L++L +     D      V   +L+   L+  H + N + +    
Sbjct:   175 EGKIGFAKLLSGCPVLEELSLLNLAWDRWDSCSVSSKILKRLTLYCAHSSRNPKSVSFDT 234

Query:   234 PSLLSFKY 241
             P+++ F+Y
Sbjct:   235 PNVVYFEY 242

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165021 AT5G56690 "AT5G56690" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 74/292 (25%), Positives = 129/292 (44%)

Query:    17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIEEE 76
             +S LPDD+LV I++ L  K A  TSVLS +W++LW +   L +D    + + +      +
Sbjct:     4 ISGLPDDLLVKILAFLPTKVAISTSVLSKQWRFLWMWLPKLKYDDYDDITDGFNSVSAFQ 63

Query:    77 RLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPAL 136
                Y  ++ K L  H++  +    + F        ++  WV  A+S+  ++  +  +   
Sbjct:    64 T--YRDFIAKNLPLHRAPIIESLSLGFRCGTLQPEDLKSWVEVAVSRSVRELSILAYYRN 121

Query:   137 CWP-PASGIYEFS-----QGCYDYLKSPCGLSRVKSLRFLYFDTVN-VTEEILEFFINNC 189
              +   +S +Y        +G    +  P  +  + SLR L    V  + E+ L   ++ C
Sbjct:   122 NYALSSSSLYTCKSLVTLKGFNIRVDVPPTVCLLPSLRTLELKRVRYLNEDSLRMLLSFC 181

Query:   190 PNLDDLRVGR--SDNLLRLKV-VGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFG--P 244
             P L+ L + R  +DNL  L V V SL +L       C++ ++  I  PSL  FK F    
Sbjct:   182 PVLEYLSIERHDNDNLRGLVVDVPSLRRLSLTSYTGCSS-DDYVIVTPSLKYFKAFDYRS 240

Query:   245 EIKLH-VKNVPQLVDVLXXXXXXXXXXXXXXXXXNYFPQLKTLELHVELNEE 295
             EI  + ++ +P+L +                    YF  +K L L V+ N +
Sbjct:   241 EISSYKIEKIPELEEA------DISIERNPEKLFVYFKSIKCLSLQVDFNSK 286

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140538 AT4G09920 "AT4G09920" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 76/263 (28%), Positives = 129/263 (49%)

Query:    15 DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIE 74
             D +  LPD++LV I+S +  K A  TS+LS RW++LW + + L F + +     Y E+ E
Sbjct:     2 DRIIGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKR-----YSES-E 55

Query:    75 EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSH--ESNISHWVYTAISKRAQKFEL-- 130
              +RL+  C++++ L  H++  +  F +V  L DSH    +I  WV  A+S+  ++ ++  
Sbjct:    56 FKRLQ--CFLDRNLPLHRAPVIESFRLV--LSDSHFKPEDIRMWVVVAVSRYIRELKIYS 111

Query:   131 -------NLFPALCWPPAS-GIYEFSQGCY-DYLKSPCGLSRVKSLRFLYFDTVNVTEE- 180
                    N+ P+  +   S  I +   G   D  +  C    + SL+ L    V   ++ 
Sbjct:   112 SHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVC----LPSLKTLELKGVRYFKQG 167

Query:   181 ILEFFINNCPNLDDLRVG--RSDNL-LRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLL 237
              L+  + NCP L+DL V   R D++ + + +V SL +L       CN LE   I   + L
Sbjct:   168 SLQRLLCNCPVLEDLFVLLLRCDDIGMFIVIVPSLQRLSLYLSPRCN-LEGFVIVLDTPL 226

Query:   238 S-FKYFGPEIKLH---VKNVPQL 256
               FK        H   ++N+P+L
Sbjct:   227 EYFKLVDRNYDRHPYMIENMPKL 249

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039488 AT2G26860 "AT2G26860" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
 Identities = 73/248 (29%), Positives = 114/248 (45%)

Query:    15 DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIE 74
             D +S LPD++LV I+  L  KE   TS+LS RW++LW +   L F     ++N YE  + 
Sbjct:     2 DRISGLPDELLVEILHCLPTKEVVSTSILSKRWEFLWLWVPKLTF-----VMNHYESDLP 56

Query:    75 EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFP 134
              +      ++ K L   K   +  F +          +I HWV T IS+R ++  +N + 
Sbjct:    57 IQD-----FITKNLRLLKPQVIESFHLQCFSSSFKPEDIKHWVVTTISRRVRELIIN-YC 110

Query:   135 ALCW--PPA------SGIYEFSQ-------GCYDYLKSPCGLSRVKSLRFLYFDTVNVT- 178
              L W   P       + +Y  +        G    +  P  +S +  L+ L  D+V  + 
Sbjct:   111 DLSWLDKPVVLLDLPNSLYTCTSLVTLKLIGHSIIVDVPRTVS-LPCLKTLELDSVAYSN 169

Query:   179 EEILEFFINNCPNLDDLRVGRS--DNLLRLKV-VGSLLQLKCLHIDHCNNLEELEISCPS 235
             EE L   ++ CP L+DL + R   DN+  L + V SLL+L  L ID   + +   I  P+
Sbjct:   170 EESLRLLLSYCPVLEDLTIHRDMHDNVKTLVIIVPSLLRLN-LPIDGAYSCDGYVIVTPA 228

Query:   236 LLSFKYFG 243
             L   K  G
Sbjct:   229 LKYLKVPG 236

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 67/246 (27%), Positives = 118/246 (47%)

Query:    10 DEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVY 69
             D   +D +S LP+ ++ +I+S L  KEAA TSVLS +W+YL+ Y +NL+FD S       
Sbjct:     2 DFVSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKP 61

Query:    70 EETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFE 129
             +  +E  R  +M +V++VL    + SVN+F +     D   + ++ W+   + +   + +
Sbjct:    62 KSDVELSR-SFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELD 120

Query:   130 LNLFPALCWPPASGIYEFSQGCYDYLKSPCG-----LSR----VKSLRFLYFDTVNVTEE 180
             L++   L +P  S I+  S+        P       L R    +  L+ LY D V+V E 
Sbjct:   121 LSI---LEYPLPSEIF-VSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQER 176

Query:   181 ILEF--FINNCPNLDDL---RVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPS 235
                F   ++ CP L++L    +G  +       V +L +L     +   N + +    P+
Sbjct:   177 GFGFVKLLSGCPVLEELVLMNIGWENWKFCSVSVKTLKRLTFFCEETYENPKSVSFDTPN 236

Query:   236 LLSFKY 241
             L+  +Y
Sbjct:   237 LVYLEY 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026761 AT1G69630 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 68/267 (25%), Positives = 122/267 (45%)

Query:     5 NIRDKDEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKL 64
             ++R K     DW+S+LPD +L  ++  L  K+  +TSVLS RW+ LW +   L+ D    
Sbjct:     8 HVRAKGSDEVDWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLD---- 63

Query:    65 LVNVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNI---SHWVYTAI 121
                    T  +E   ++ +V+  L+ +    + +FI+ +D DD ++ +I     W+ T +
Sbjct:    64 ------NTDFQEFNTFLSFVDSFLDFNSESFLQKFILKYDCDDEYDPDIFLIGRWINTIV 117

Query:   122 SKRAQKFELNLFPALCWPPA--SGIYEFS-----QGCYDYLKSPCGLSRVKSLRFLYFDT 174
             +++ Q  ++       W     S IY        + C   L SP  +S + SL+ +    
Sbjct:   118 TRKVQHIDVLDDSYGSWEVQLPSSIYTCESLVSLKLCGLTLASPEFVS-LPSLKVMDLII 176

Query:   175 VNVTEEI-LEFFINNCPNLDDLRVGRS--DNLLRLKVVGSLLQLKCLHIDHCNN--LEEL 229
                 +++ LE  I  CP L+ L + RS  D +  L+V    L L+  H+   +   +E+L
Sbjct:   177 TKFADDMGLETLITKCPVLESLTIERSFCDEIEVLRVRSQSL-LRFTHVADSDEGVVEDL 235

Query:   230 EIS--CPSLLSFKYFGPEIKLHVKNVP 254
              +S   P L   +     +   + N P
Sbjct:   236 VVSIDAPKLEYLRLSDHRVASFILNKP 262

GO:0005634 "nucleus" evidence=ISM

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

TAIR|locus:2025812 AT1G80960 "AT1G80960" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 65/240 (27%), Positives = 114/240 (47%)

Query:    15 DWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVYEETIE 74
             DW+S+LPDD+L+ I+SRL+ +EA RTSV+S RW+++W   S+L FD  K ++N    T++
Sbjct:    50 DWISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHVWNQMSHLVFDMRKNIINS-NNTLD 108

Query:    75 EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWV-YTAISKRAQKFELNL- 132
                      + +V+ +H+   +   +I+          ++ W+   +  KR +   L   
Sbjct:   109 GSN-PVATLITQVINNHRG-HLESCVIIHVPYQGGNGMLNSWIRLLSCVKRTKVLTLRYH 166

Query:   133 -------FPALCWPPAS----GIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVNVTEEI 181
                    F    + P S     +   S   Y +L+S   L    +LR L   ++ V  EI
Sbjct:   167 YGTWDRKFKTFNFSPDSLSHPSLMSLSLHSY-FLESSHPLRNCSNLRTLKLLSI-VAPEI 224

Query:   182 LEF--FINNCPNLDDLRVGR---SDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSL 236
               F   + +CP L+ L +G      + + LK+     +LK L +     ++ +E+S  SL
Sbjct:   225 GVFNRVLASCPCLEVLVLGICCFKKSRVPLKIENK--KLKLLQVSSLERIDAIEVSTTSL 282

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 65/207 (31%), Positives = 101/207 (48%)

Query:    10 DEALKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNLNFDASKLLVNVY 69
             D   +D +S LPD +L+ I+S L  + A  TSVLS RW+ LWT    L FD++     V+
Sbjct:     8 DSMNEDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSN--FNPVF 65

Query:    70 EETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFD--LDDSHESNISHWVYTAISKRAQK 127
             ++   +  + +   V K L  HK+  +    + F+   D  H   +  W+ TA ++  +K
Sbjct:    66 DDDNIDPTM-FSENVYKTLSLHKAPVLESLHLSFEGRTDCLH---VGIWIATAFARGVRK 121

Query:   128 FELNLF----PALCWPPASGIYEFSQGCYDYLKSPCGL-----SRV--KSLRFLYFDTVN 176
               L+ F      +  P  S ++ ++    + LK  C +     SRV  KSLR LY D V+
Sbjct:   122 LVLDSFYQEDQTVTLP--SVLFSYNDSL-EILKLKCAIDLDFPSRVCLKSLRKLYLDQVH 178

Query:   177 VT-EEILEFFINNCPNLDDLRVGRSDN 202
                EE +   +  CP+L DL V R  N
Sbjct:   179 FKDEESVCNLLCGCPSLQDLVVHRYSN 205

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
pfam00646	48	pfam00646, F-box, F-box domain	2e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 18 SRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWT 52
            LPDD+L+ I+SRL  K+  R S++S RW+ L  
Sbjct: 4  LDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.74
KOG4341	483	consensus F-box protein containing LRR [General fu	99.68
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.88
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.49
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.38
KOG4341	483	consensus F-box protein containing LRR [General fu	98.18
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.84
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.8
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.75
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.54
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.51
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.42
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.07
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.3
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.9
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.77
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.69
PRK15386	426	type III secretion protein GogB; Provisional	95.65
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.35
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.11
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.56
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.34
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.2
PRK15386	426	type III secretion protein GogB; Provisional	93.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	93.62
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	93.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.15
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	91.63
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	89.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	89.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.31
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	88.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	87.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	86.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	85.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	84.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	84.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	84.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	83.81
PF13013	109	F-box-like_2: F-box-like domain	83.77

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.1e-20  Score=155.39  Aligned_cols=254  Identities=20%  Similarity=0.214  Sum_probs=156.7

Q ss_pred             CCCCChHHHHHHHhcCChhHHHHhhhcccchhh------ccccCceeeEeccccccccchhhHHHHHHHHHHHHHHHHhh
Q 020558           17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKY------LWTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLES   90 (324)
Q Consensus        17 ~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~------lw~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   90 (324)
                      |..|||||+..||+.|+.+|+.+.+.|||||.+      +|..   ++....++.+               +...+.+++
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p---------------~~l~~l~~r  159 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP---------------DVLGRLLSR  159 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh---------------hHHHHHHhC
Confidence            788999999999999999999999999999976      4776   7777776665               233333322


Q ss_pred             cCCCCccEEEEEEeCCCCCcchHHHHHHHH--HhcCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCCCCCCCCc
Q 020558           91 HKSLSVNEFIIVFDLDDSHESNISHWVYTA--ISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLR  168 (324)
Q Consensus        91 ~~~~~l~~l~l~~~~~~~~~~~v~~wl~~~--~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~L~  168 (324)
                        |  +.-+++.-.+  .+.   ++...++  +..++|+++++......       .          .+..-+..|..|+
T Consensus       160 --g--V~v~Rlar~~--~~~---prlae~~~~frsRlq~lDLS~s~it~-------s----------tl~~iLs~C~kLk  213 (419)
T KOG2120|consen  160 --G--VIVFRLARSF--MDQ---PRLAEHFSPFRSRLQHLDLSNSVITV-------S----------TLHGILSQCSKLK  213 (419)
T ss_pred             --C--eEEEEcchhh--hcC---chhhhhhhhhhhhhHHhhcchhheeH-------H----------HHHHHHHHHHhhh
Confidence              2  4444432111  111   1222222  33468999986543220       0          0001134688999


Q ss_pred             EEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE---ecccCCccEEEEecCCCcceE-----EEecCCccEEE
Q 020558          169 FLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV---VGSLLQLKCLHIDHCNNLEEL-----EISCPSLLSFK  240 (324)
Q Consensus       169 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i---~~~~~~L~~L~i~~c~~l~~l-----~i~~p~L~~L~  240 (324)
                      .|.|++.+++|..... ++.-.+|++|++..|.|.+.-.+   -.+|.+|.+|+++.|......     .--.|+|..|+
T Consensus       214 ~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN  292 (419)
T KOG2120|consen  214 NLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN  292 (419)
T ss_pred             hccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence            9999999998875555 66678899999999998876332   357789999999999854321     11237888888


Q ss_pred             EcceeeEE-------eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEE
Q 020558          241 YFGPEIKL-------HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMF  312 (324)
Q Consensus       241 ~~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l  312 (324)
                      ++|+...+       ....||+|+++++.... ...+..+ ..+..++.|++|.++-++......+-. ...|.|.+|.+
T Consensus       293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-~l~~~~~-~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-MLKNDCF-QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDV  370 (419)
T ss_pred             hhhhHhhhhhhHHHHHHHhCCceeeecccccc-ccCchHH-HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEe
Confidence            88875432       24456777666666411 1111222 223456666666666555311112222 55666666666


Q ss_pred             Eecch
Q 020558          313 MLVHL  317 (324)
Q Consensus       313 ~~~~~  317 (324)
                      ..|-.
T Consensus       371 ~g~vs  375 (419)
T KOG2120|consen  371 FGCVS  375 (419)
T ss_pred             ccccC
Confidence            55443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.68  E-value=2.9e-19  Score=155.80  Aligned_cols=278  Identities=18%  Similarity=0.212  Sum_probs=163.8

Q ss_pred             CCChHHHHHHHhcCChhHHHHhhhcccchhhc------cccCceeeEeccccccccchhhHHHHHHHHHHHHHHHHhhcC
Q 020558           19 RLPDDILVNIISRLTLKEAARTSVLSSRWKYL------WTYASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHK   92 (324)
Q Consensus        19 ~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l------w~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~   92 (324)
                      .||++++.+|||+|+++.+.|++++|+.|...      |..+....|.                 .++...|-..+.+++
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~-----------------rDv~g~VV~~~~~Rc  136 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQ-----------------RDVDGGVVENMISRC  136 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcch-----------------hcCCCcceehHhhhh
Confidence            59999999999999999999999999999864      7765434442                 222244555666778


Q ss_pred             CCCccEEEEEEeCCCCCcchHHHHHHHH-HhcCceEEEEEcCCCCCCCCCCcceeeC--CCCcccccCCC----------
Q 020558           93 SLSVNEFIIVFDLDDSHESNISHWVYTA-ISKRAQKFELNLFPALCWPPASGIYEFS--QGCYDYLKSPC----------  159 (324)
Q Consensus        93 ~~~l~~l~l~~~~~~~~~~~v~~wl~~~-~~~~l~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~l~l~~----------  159 (324)
                      |+.++++++++.....+..    .-..+ .++++++|.+..+...   .+.....+.  |..++.+.+.+          
T Consensus       137 gg~lk~LSlrG~r~v~~ss----lrt~~~~CpnIehL~l~gc~~i---Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk  209 (483)
T KOG4341|consen  137 GGFLKELSLRGCRAVGDSS----LRTFASNCPNIEHLALYGCKKI---TDSSLLSLARYCRKLRHLNLHSCSSITDVSLK  209 (483)
T ss_pred             ccccccccccccccCCcch----hhHHhhhCCchhhhhhhcceec---cHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence            8889999998875443322    22222 3458999988666533   111111111  11111111110          


Q ss_pred             -CCCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcce-----------------------------EEE
Q 020558          160 -GLSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLR-----------------------------LKV  208 (324)
Q Consensus       160 -~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-----------------------------l~i  208 (324)
                       -..+|++|++|+++++. +++++++.+..+|..++.+.+.+|...+.                             +.+
T Consensus       210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i  289 (483)
T KOG4341|consen  210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI  289 (483)
T ss_pred             HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence             12345666666666655 55555555555555555555555542210                             011


Q ss_pred             ecccCCccEEEEecCCCcc-----eEEEecCCccEEEEcceee------EEeeCCCCCceEEEEecccCCcccceecccc
Q 020558          209 VGSLLQLKCLHIDHCNNLE-----ELEISCPSLLSFKYFGPEI------KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIV  277 (324)
Q Consensus       209 ~~~~~~L~~L~i~~c~~l~-----~l~i~~p~L~~L~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~  277 (324)
                      ...|.+|+.|..++|..+.     .+.-++++|+.+.+.++..      ...-.+++.|+++.+...... .+..+.++.
T Consensus       290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~-~d~tL~sls  368 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI-TDGTLASLS  368 (483)
T ss_pred             hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee-hhhhHhhhc
Confidence            1234555555555555432     2444678888887766631      123446788888877752211 222455667


Q ss_pred             ccCCCceEEEEEeeecceecc-----cCC--CCCCcceeEEEEecchhhhccC
Q 020558          278 NYFPQLKTLELHVELNEEILQ-----FPE--CDLPELRHLMFMLVHLIVAASL  323 (324)
Q Consensus       278 ~~~~~L~~L~l~~~~~~~~~~-----~~~--~~~~~L~~L~l~~~~~i~~~~~  323 (324)
                      .+|+.|+.|.++.+..  +.+     +..  .....|..|+++.|+.|+++.|
T Consensus       369 ~~C~~lr~lslshce~--itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L  419 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCEL--ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL  419 (483)
T ss_pred             cCCchhccCChhhhhh--hhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence            7899999999885553  222     222  5667888888888888888765

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.88  E-value=1.4e-09  Score=67.82  Aligned_cols=35  Identities=37%  Similarity=0.695  Sum_probs=30.8

Q ss_pred             CCCCChHHHHHHHhcCChhHHHHhhhcccchhhcc
Q 020558           17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLW   51 (324)
Q Consensus        17 ~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw   51 (324)
                      |..||+||+.+||++|+.+|+++++.|||+|+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999754

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.49  E-value=3.2e-08  Score=61.92  Aligned_cols=37  Identities=43%  Similarity=0.660  Sum_probs=31.4

Q ss_pred             CCCCChHHHHHHHhcCChhHHHHhhhcccchhhcccc
Q 020558           17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTY   53 (324)
Q Consensus        17 ~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw~~   53 (324)
                      |++||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987665

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.38  E-value=2.3e-07  Score=55.82  Aligned_cols=34  Identities=41%  Similarity=0.670  Sum_probs=31.6

Q ss_pred             CChHHHHHHHhcCChhHHHHhhhcccchhhcccc
Q 020558           20 LPDDILVNIISRLTLKEAARTSVLSSRWKYLWTY   53 (324)
Q Consensus        20 LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw~~   53 (324)
                      ||+|++.+||++++.+|+.+++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.18  E-value=7.4e-08  Score=85.22  Aligned_cols=68  Identities=19%  Similarity=0.152  Sum_probs=37.9

Q ss_pred             CCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc--CC--CCCCcceeEEEEecchhhhcc
Q 020558          252 NVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF--PE--CDLPELRHLMFMLVHLIVAAS  322 (324)
Q Consensus       252 ~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~--~~~~~L~~L~l~~~~~i~~~~  322 (324)
                      ++++|+-+.+.... ...+..|..+..+++.|+.|.+..+..  +.+.  ..  ..|+.|+.|.++-|..|||.+
T Consensus       318 ~~~~L~~l~l~~c~-~fsd~~ft~l~rn~~~Le~l~~e~~~~--~~d~tL~sls~~C~~lr~lslshce~itD~g  389 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQ-QFSDRGFTMLGRNCPHLERLDLEECGL--ITDGTLASLSRNCPRLRVLSLSHCELITDEG  389 (483)
T ss_pred             CCCceEEEeccccc-hhhhhhhhhhhcCChhhhhhcccccce--ehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence            34445544444311 112233444455666666666655543  2221  11  788899999999888888763

>PLN03210 Resistant to P

Probab=97.97  E-value=1e-05  Score=84.24  Aligned_cols=84  Identities=25%  Similarity=0.351  Sum_probs=44.4

Q ss_pred             CCCCCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEEEe-cccCCccEEEEecCCCcceEE--Eec
Q 020558          158 PCGLSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV-GSLLQLKCLHIDHCNNLEELE--ISC  233 (324)
Q Consensus       158 ~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~-~~~~~L~~L~i~~c~~l~~l~--i~~  233 (324)
                      +.++..+++|+.|+|.++. +..  +.. ++.+++||.|++.+|.....+.-. ..+++|+.|++.+|..++.+.  ++.
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l  703 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKE--IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINL  703 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCc--CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCC
Confidence            3445567777777777643 211  111 455677777777777654332111 123566666666665554432  233


Q ss_pred             CCccEEEEcce
Q 020558          234 PSLLSFKYFGP  244 (324)
Q Consensus       234 p~L~~L~~~~~  244 (324)
                      ++|+.|.+.|+
T Consensus       704 ~sL~~L~Lsgc  714 (1153)
T PLN03210        704 KSLYRLNLSGC  714 (1153)
T ss_pred             CCCCEEeCCCC
Confidence            55555555544

syringae 6; Provisional

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=1.3e-06  Score=74.40  Aligned_cols=129  Identities=18%  Similarity=0.234  Sum_probs=96.6

Q ss_pred             CCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcce---EEEecccCCccEEEEecCCC-c-----ceEEEe
Q 020558          163 RVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLR---LKVVGSLLQLKCLHIDHCNN-L-----EELEIS  232 (324)
Q Consensus       163 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~---l~i~~~~~~L~~L~i~~c~~-l-----~~l~i~  232 (324)
                      .=.+|+.|+|+.+. |+.++++-++++|..|.+|++.+|.-.+.   +.+.+-.++|+.|++++|.. +     .-+.-.
T Consensus       232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            45789999999999 99999999999999999999999975443   23344448999999999884 2     224558


Q ss_pred             cCCccEEEEcceee--E---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          233 CPSLLSFKYFGPEI--K---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       233 ~p~L~~L~~~~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      ||+|..|.++++..  +   ..+-.++.|+.+++.-.|... ...+.+ +...|.|..|++..+.-
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~-l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-PETLLE-LNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-hHHeee-eccCcceEEEEeccccC
Confidence            89999999998753  1   245578999999988644321 111211 46889999999987654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.80  E-value=1e-06  Score=76.43  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=37.2

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHH---HHHHHHHcCCccceeEeecCC
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEE---ILEFFINNCPNLDDLRVGRSD  201 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~  201 (324)
                      +.+.++|.|++|+|+...|+.+   .|..++++|..|++|.|.+|-
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            3456789999999999888754   588999999999999999994

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=4.7e-06  Score=74.45  Aligned_cols=150  Identities=19%  Similarity=0.136  Sum_probs=96.4

Q ss_pred             CCCCCCCcEEEeeeEEeCH-HHHHHHHHcCCccceeEeec----CCCcceEEEecccCCccEEEEecCCC----cceEEE
Q 020558          161 LSRVKSLRFLYFDTVNVTE-EILEFFINNCPNLDDLRVGR----SDNLLRLKVVGSLLQLKCLHIDHCNN----LEELEI  231 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~----c~~~~~l~i~~~~~~L~~L~i~~c~~----l~~l~i  231 (324)
                      ...||+++.|+|++.-++. +.+.+++...|+||.|+|..    |.....  .....++||.|.+..|.-    ++.+..
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~--~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN--TTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc--chhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            3469999999999987765 56889999999999999996    332222  222458999999999983    445677


Q ss_pred             ecCCccEEEEcceee----EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC------
Q 020558          232 SCPSLLSFKYFGPEI----KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE------  301 (324)
Q Consensus       232 ~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------  301 (324)
                      ..|+|+.|.+.+...    .........|+++++.......  ..-......+|.|+.|.+..+....+...+.      
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT  297 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc--cccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence            789999988766521    1334456677777777521110  1111123466777777776665532222222      


Q ss_pred             CCCCcceeEEEEe
Q 020558          302 CDLPELRHLMFML  314 (324)
Q Consensus       302 ~~~~~L~~L~l~~  314 (324)
                      ..|++|++|.++.
T Consensus       298 ~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  298 HTFPKLEYLNISE  310 (505)
T ss_pred             cccccceeeeccc
Confidence            4667777776643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.75  E-value=2.6e-05  Score=80.23  Aligned_cols=145  Identities=19%  Similarity=0.193  Sum_probs=71.3

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceE---EEecCCccE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEEL---EISCPSLLS  238 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l---~i~~p~L~~  238 (324)
                      .+++|++|+|++..+++.. .  ....++|++|++.++.-...+ ..-..+++|++|+++++.....+   .-+.++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            4455555555544433210 0  123455555555554321110 00123356666666655421111   123456666


Q ss_pred             EEEcceee----EEeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEE
Q 020558          239 FKYFGPEI----KLHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLM  311 (324)
Q Consensus       239 L~~~~~~~----~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~  311 (324)
                      |.+.+...    +-.++++++|+.+++... ....    +..-+..+++|+.|+++.+..  ....|.  ..+++|++|.
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~  266 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNL--TGPIPSSLGNLKNLQYLF  266 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCcee--ccccChhHhCCCCCCEEE
Confidence            66655432    223456666776666541 1111    112235778888888877653  223444  6778888888


Q ss_pred             EEecc
Q 020558          312 FMLVH  316 (324)
Q Consensus       312 l~~~~  316 (324)
                      ++.+.
T Consensus       267 L~~n~  271 (968)
T PLN00113        267 LYQNK  271 (968)
T ss_pred             CcCCe
Confidence            86653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.71  E-value=1.6e-06  Score=81.64  Aligned_cols=80  Identities=28%  Similarity=0.470  Sum_probs=56.1

Q ss_pred             CCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcce---EEEecccCCccEEEEecCCCcc-----eEEEe
Q 020558          162 SRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLR---LKVVGSLLQLKCLHIDHCNNLE-----ELEIS  232 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~---l~i~~~~~~L~~L~i~~c~~l~-----~l~i~  232 (324)
                      ..|++|+.|.+.++. ++|.++..+...||+||+|.+.+|..++.   ..+...|+.|++|++..|..+.     .+...
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            456888888888887 88888888888888888888888876543   2445567788888888877532     23334


Q ss_pred             cCCccEEEE
Q 020558          233 CPSLLSFKY  241 (324)
Q Consensus       233 ~p~L~~L~~  241 (324)
                      +|+|+.|.+
T Consensus       320 c~~l~~l~~  328 (482)
T KOG1947|consen  320 CPNLRELKL  328 (482)
T ss_pred             Ccchhhhhh
Confidence            566666553

>PLN03210 Resistant to P

Probab=97.54  E-value=6e-05  Score=78.59  Aligned_cols=152  Identities=20%  Similarity=0.211  Sum_probs=87.2

Q ss_pred             CCCCCcEEEeeeEEeC---HH--HHH-HHHHcCCccceeEeecCCCcceEEE-ecccCCccEEEEecCCCcceEE--Eec
Q 020558          163 RVKSLRFLYFDTVNVT---EE--ILE-FFINNCPNLDDLRVGRSDNLLRLKV-VGSLLQLKCLHIDHCNNLEELE--ISC  233 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~---~~--~l~-~ll~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~i~~c~~l~~l~--i~~  233 (324)
                      .+++|++|.+.++...   +.  .+. .....+++|++|++.+|.....+-. -..+++|+.|.+.+|..++.+.  +..
T Consensus       745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L  824 (1153)
T PLN03210        745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL  824 (1153)
T ss_pred             cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCc
Confidence            5778888888764311   10  011 1123467888888888765443211 1245778888888887776653  245


Q ss_pred             CCccEEEEcceeeE-EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeE
Q 020558          234 PSLLSFKYFGPEIK-LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHL  310 (324)
Q Consensus       234 p~L~~L~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L  310 (324)
                      ++|+.|.+.++..- .......+|+.+++........+    .-+..+++|+.|.++.+.  ....+|.  ..+++|+.|
T Consensus       825 ~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP----~si~~l~~L~~L~L~~C~--~L~~l~~~~~~L~~L~~L  898 (1153)
T PLN03210        825 ESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP----WWIEKFSNLSFLDMNGCN--NLQRVSLNISKLKHLETV  898 (1153)
T ss_pred             cccCEEECCCCCccccccccccccCEeECCCCCCccCh----HHHhcCCCCCEEECCCCC--CcCccCcccccccCCCee
Confidence            77888888776321 11112346677666542111111    113467788888887665  3444444  667777777


Q ss_pred             EEEecchhhh
Q 020558          311 MFMLVHLIVA  320 (324)
Q Consensus       311 ~l~~~~~i~~  320 (324)
                      .++.|..++.
T Consensus       899 ~l~~C~~L~~  908 (1153)
T PLN03210        899 DFSDCGALTE  908 (1153)
T ss_pred             ecCCCccccc
Confidence            7777766553

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.51  E-value=7.9e-05  Score=76.69  Aligned_cols=152  Identities=16%  Similarity=0.120  Sum_probs=73.7

Q ss_pred             CCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCC------------------------CcceEEEecccC
Q 020558          158 PCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSD------------------------NLLRLKVVGSLL  213 (324)
Q Consensus       158 ~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~------------------------~~~~l~i~~~~~  213 (324)
                      |..+..+++|+.|+|.++.+++. +..-+...+.|+.|++.++.                        -.+.+.-....+
T Consensus       397 p~~~~~~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~  475 (968)
T PLN00113        397 PKSLGACRSLRRVRLQDNSFSGE-LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK  475 (968)
T ss_pred             CHHHhCCCCCCEEECcCCEeeeE-CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccc
Confidence            34455677777777776665432 11123445555555555442                        111110001123


Q ss_pred             CccEEEEecCCCcceEE---EecCCccEEEEcceeeE----EeeCCCCCceEEEEec-ccCCcccceeccccccCCCceE
Q 020558          214 QLKCLHIDHCNNLEELE---ISCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKT  285 (324)
Q Consensus       214 ~L~~L~i~~c~~l~~l~---i~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~  285 (324)
                      +|+.|++++|.....+.   -..++|+.|.+.+....    -.+.++++|+.+++.. .......    ..+..+++|+.
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~  551 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQ  551 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC----hhHhCcccCCE
Confidence            45555555444211111   12355556655554321    2344566666666654 1111111    22346677888


Q ss_pred             EEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558          286 LELHVELNEEILQFPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       286 L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~  316 (324)
                      |+++.+..  ....|.  ..+.+|++|+++.+.
T Consensus       552 L~Ls~N~l--~~~~p~~l~~l~~L~~l~ls~N~  582 (968)
T PLN00113        552 LDLSQNQL--SGEIPKNLGNVESLVQVNISHNH  582 (968)
T ss_pred             EECCCCcc--cccCChhHhcCcccCEEeccCCc
Confidence            88776653  233444  566778888876654

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.47  E-value=0.00015  Score=38.45  Aligned_cols=25  Identities=40%  Similarity=0.715  Sum_probs=22.5

Q ss_pred             CCcEEEeeeEEeCHH-HHHHHHHcCC
Q 020558          166 SLRFLYFDTVNVTEE-ILEFFINNCP  190 (324)
Q Consensus       166 ~L~~L~L~~~~~~~~-~l~~ll~~cp  190 (324)
                      +||+|+|..+.+.++ .++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999998765 6999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.42  E-value=9.4e-06  Score=76.47  Aligned_cols=128  Identities=21%  Similarity=0.378  Sum_probs=79.9

Q ss_pred             CCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecC-CCcc-----eEEEecccCCccEEEEecCCCcce-----EE
Q 020558          163 RVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRS-DNLL-----RLKVVGSLLQLKCLHIDHCNNLEE-----LE  230 (324)
Q Consensus       163 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c-~~~~-----~l~i~~~~~~L~~L~i~~c~~l~~-----l~  230 (324)
                      .+++|+.|.+.++. +++..+..+...||+|++|.+.+| ....     ...+...|++|++|++..|..+..     +.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            47999999999886 777778888999999999999883 3221     123456678888898888875333     22


Q ss_pred             EecCCccEEEEcceee------EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEee
Q 020558          231 ISCPSLLSFKYFGPEI------KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVE  291 (324)
Q Consensus       231 i~~p~L~~L~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  291 (324)
                      -.+|+|+.|.+.++..      ......|++|+++++.+.... .+..+..+...|++++.|.+...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~-~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL-TDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc-hHHHHHHHHHhCcchhhhhhhhc
Confidence            2467777777554431      123445666777766642111 22223333455666666554433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=8.6e-06  Score=72.82  Aligned_cols=152  Identities=19%  Similarity=0.168  Sum_probs=109.0

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC---CCcceEEEecccCCccEEEEec----CCCcceEEEecC
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS---DNLLRLKVVGSLLQLKCLHIDH----CNNLEELEISCP  234 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c---~~~~~l~i~~~~~~L~~L~i~~----c~~l~~l~i~~p  234 (324)
                      ..+..|+...|.++.+.+...+..+..||++++|+|..-   .+....+|...+|+|+.|+++.    |+.-...+...+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            357889999999999876665567889999999999973   2334456777889999999985    332233455668


Q ss_pred             CccEEEEcceeeE-----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcce
Q 020558          235 SLLSFKYFGPEIK-----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELR  308 (324)
Q Consensus       235 ~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~  308 (324)
                      .|+.|.++++...     -.+..+|+|+.+++.+.........-   -..+..|+.|+|+.+.......++. ..|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccccccccchh
Confidence            9999999888643     25778999999999863211000001   2356789999999887633333445 8999999


Q ss_pred             eEEEEecc
Q 020558          309 HLMFMLVH  316 (324)
Q Consensus       309 ~L~l~~~~  316 (324)
                      .|.++.+.
T Consensus       275 ~Lnls~tg  282 (505)
T KOG3207|consen  275 QLNLSSTG  282 (505)
T ss_pred             hhhccccC
Confidence            99998874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.17  E-value=5.6e-05  Score=60.90  Aligned_cols=122  Identities=18%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--E--ecCCccE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--I--SCPSLLS  238 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i--~~p~L~~  238 (324)
                      +.-.+++|+|.+..|+.  ++.+-..+..|+.|++.++.-. .+..-..+++|+.|.+++-. +..+.  +  ..|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence            34467788888777643  4443335677888888776311 11111234667777766433 33332  1  2466666


Q ss_pred             EEEcceeeE-----EeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEE
Q 020558          239 FKYFGPEIK-----LHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELH  289 (324)
Q Consensus       239 L~~~~~~~~-----~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~  289 (324)
                      |.+.+....     ..+..+|+|+.+++.+ +......|.. .++..+|+|+.|+-.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~-~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRL-FVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHH-HHHHH-TT-SEETTE
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHH-HHHHHcChhheeCCE
Confidence            666554321     1344556666666555 2222222221 234455666655443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.15  E-value=8.6e-05  Score=59.83  Aligned_cols=136  Identities=21%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             eCHHHHHHH--HHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEEEcceeeE-E--e
Q 020558          177 VTEEILEFF--INNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKYFGPEIK-L--H  249 (324)
Q Consensus       177 ~~~~~l~~l--l~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~~~~~~~-~--~  249 (324)
                      ++.+.+++.  .-++-.+++|+|.++.-..--.+...+.+|+.|+++++. +.+++ + ..++|++|.+.+.... +  .
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccc
Confidence            444444443  236668899999997422211233345799999999876 44442 2 2489999998877553 2  1


Q ss_pred             e-CCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558          250 V-KNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV  315 (324)
Q Consensus       250 ~-~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~  315 (324)
                      + ..+|+|+++++.........  -..-++.+++|+.|+|..++..+...-..   ..+|+|+.|.-...
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLN--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCC--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             hHHhCCcCCEEECcCCcCCChH--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            2 35899999999862221111  12346789999999999887632211111   67888998865443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.07  E-value=9.6e-05  Score=65.74  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=77.3

Q ss_pred             CCCcEEEeeeEEeCHHHHHHH---HHcC-CccceeEeecCCCcc----e-EEEecccCCccEEEEecCCCcce-----EE
Q 020558          165 KSLRFLYFDTVNVTEEILEFF---INNC-PNLDDLRVGRSDNLL----R-LKVVGSLLQLKCLHIDHCNNLEE-----LE  230 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~l---l~~c-p~Le~L~l~~c~~~~----~-l~i~~~~~~L~~L~i~~c~~l~~-----l~  230 (324)
                      ++|++|++.++.+++..+..+   +..+ ++|++|++.+|.-..    . ...-..+.+|++|++.+|. +..     +.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence            458888888777775544332   3444 777888888775321    0 0111233567777777665 221     10


Q ss_pred             ---EecCCccEEEEcceeeE--------EeeCCCCCceEEEEecccCCcccceecccc----ccCCCceEEEEEeeecce
Q 020558          231 ---ISCPSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGHGIGKGKVIGPIV----NYFPQLKTLELHVELNEE  295 (324)
Q Consensus       231 ---i~~p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~  295 (324)
                         ...++|+.|.+.++...        ..+..+++|+.+++......  +..+..+.    ...+.|+.|.+..+.+..
T Consensus       187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~--~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~  264 (319)
T cd00116         187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT--DAGAAALASALLSPNISLLTLSLSCNDITD  264 (319)
T ss_pred             HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc--hHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence               12257777777665321        12445677777777652111  11111112    234677777777665411


Q ss_pred             ec--ccCC--CCCCcceeEEEEec
Q 020558          296 IL--QFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       296 ~~--~~~~--~~~~~L~~L~l~~~  315 (324)
                      ..  .+..  +.+++|++|.++.+
T Consensus       265 ~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         265 DGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             HHHHHHHHHHhcCCCccEEECCCC
Confidence            11  1111  55567777777554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.90  E-value=0.00031  Score=62.48  Aligned_cols=152  Identities=14%  Similarity=0.060  Sum_probs=97.5

Q ss_pred             CC-CCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecCCCcce-E-EEe---cccCCccEEEEecCCC-------c
Q 020558          163 RV-KSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRSDNLLR-L-KVV---GSLLQLKCLHIDHCNN-------L  226 (324)
Q Consensus       163 ~~-~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~~-l-~i~---~~~~~L~~L~i~~c~~-------l  226 (324)
                      .+ ++|+.|+|.++.+++..   +...+..++.|+.|++.+|.-... + .+.   ...+.|++|++++|.-       +
T Consensus       134 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  213 (319)
T cd00116         134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL  213 (319)
T ss_pred             hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence            45 89999999999988543   445567888999999999853211 0 111   1236999999998862       1


Q ss_pred             ceEEEecCCccEEEEcceeeE----Ee-----eCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeeccee
Q 020558          227 EELEISCPSLLSFKYFGPEIK----LH-----VKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEI  296 (324)
Q Consensus       227 ~~l~i~~p~L~~L~~~~~~~~----~~-----~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  296 (324)
                      ....-..|+|+.|.+.+....    ..     ..+.+.|+.+++.+. ........+.+.+..+++|+.|+++.+.. ..
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l-~~  292 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF-GE  292 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC-cH
Confidence            122234589999999886432    01     113479999999863 22112223344556678999999998876 22


Q ss_pred             c---ccCC--CCC-CcceeEEEEec
Q 020558          297 L---QFPE--CDL-PELRHLMFMLV  315 (324)
Q Consensus       297 ~---~~~~--~~~-~~L~~L~l~~~  315 (324)
                      .   .+..  ..+ ++|+.|.+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         293 EGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHHHHHHHhhcCCchhhcccCCC
Confidence            2   1221  666 78888887643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.77  E-value=0.00018  Score=70.29  Aligned_cols=114  Identities=16%  Similarity=0.137  Sum_probs=67.9

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF  242 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~  242 (324)
                      -||+|++|.+.+..+..+++.++..+.|+|..|++.++. ++.+..-+..++|+.|.+.+-.                +.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe----------------~e  208 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLE----------------FE  208 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCC----------------CC
Confidence            589999999999999888899999999999999999983 3333222223344444433221                11


Q ss_pred             ceeeEEeeCCCCCceEEEEecc-cCCc--ccceeccccccCCCceEEEEEeeec
Q 020558          243 GPEIKLHVKNVPQLVDVLIGGG-HGIG--KGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       243 ~~~~~~~~~~~~~L~~l~l~~~-~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      ....-..+-++.+|+.++|+.. +...  .-..+.+-...+|+||.|+.+...+
T Consensus       209 ~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  209 SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            1100001335666666666651 1111  1111233445688888888886665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.69  E-value=0.00019  Score=70.12  Aligned_cols=96  Identities=22%  Similarity=0.300  Sum_probs=45.1

Q ss_pred             CCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-----EEe-----------cccCCccEEEEecCCC----
Q 020558          166 SLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-----KVV-----------GSLLQLKCLHIDHCNN----  225 (324)
Q Consensus       166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-----~i~-----------~~~~~L~~L~i~~c~~----  225 (324)
                      +++..+|.++......++.+...+  |++|.+.++......     .+.           .+-..|++|+|.+-..    
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~  138 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG  138 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence            555556665555554444433222  666666654322110     000           1224566666654221    


Q ss_pred             -cceEEEecCCccEEEEcceeeE-----EeeCCCCCceEEEEec
Q 020558          226 -LEELEISCPSLLSFKYFGPEIK-----LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       226 -l~~l~i~~p~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~  263 (324)
                       ..+++.-.|+|++|.++|....     ....++|+|..++|++
T Consensus       139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~  182 (699)
T KOG3665|consen  139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG  182 (699)
T ss_pred             HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC
Confidence             2234444466666666654321     1244556666665554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.69  E-value=0.00016  Score=67.27  Aligned_cols=35  Identities=11%  Similarity=0.255  Sum_probs=19.0

Q ss_pred             CCCCCCCcEEEeeeEEe---CHHHHHHHHHcCCccceeEeec
Q 020558          161 LSRVKSLRFLYFDTVNV---TEEILEFFINNCPNLDDLRVGR  199 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~---~~~~l~~ll~~cp~Le~L~l~~  199 (324)
                      |.++++|+.|.|.+..|   .|+.|    -+|..+|+|+|..
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~F----y~l~kme~l~L~~  278 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAF----YGLEKMEHLNLET  278 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcce----eeecccceeeccc
Confidence            45666677776665543   23322    2355666666653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.30  E-value=0.0017  Score=60.67  Aligned_cols=97  Identities=20%  Similarity=0.258  Sum_probs=52.3

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC--CCcceEEEecccCCccEEEEecCCCcceEEEec----CCcc
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS--DNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC----PSLL  237 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c--~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~----p~L~  237 (324)
                      ..+|+.|.|.+..|+.-.-++ ++..|.||.|+|..-  +.+..-..+.+ ..+++|++.+-. +..++.++    -+|.
T Consensus       124 sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~-It~l~~~~F~~lnsL~  200 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNR-ITTLETGHFDSLNSLL  200 (873)
T ss_pred             ccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeecccc-ccccccccccccchhe
Confidence            456999999887755322222 445678888888863  22221112211 567788776533 22222111    2555


Q ss_pred             EEEEcceee----EEeeCCCCCceEEEEec
Q 020558          238 SFKYFGPEI----KLHVKNVPQLVDVLIGG  263 (324)
Q Consensus       238 ~L~~~~~~~----~~~~~~~~~L~~l~l~~  263 (324)
                      +|+++....    +..++++|+|+.+.+.-
T Consensus       201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  201 TLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             eeecccCcccccCHHHhhhcchhhhhhccc
Confidence            666655432    13455666666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.90  E-value=0.00011  Score=69.04  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             CCccEEEEecCCCcceEEE---ecCCccEEEEcceee---EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEE
Q 020558          213 LQLKCLHIDHCNNLEELEI---SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTL  286 (324)
Q Consensus       213 ~~L~~L~i~~c~~l~~l~i---~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L  286 (324)
                      .+|+.|++++-. +.++..   ...+|++|+++....   |-.+..++.|++++...     +...|..++++.-+|..|
T Consensus       245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~-----NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN-----NKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             hhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc-----CcccccCCccchhhhhhh
Confidence            455555555422 222222   124666666655432   22344566666665543     222333344444443333


Q ss_pred             EEEeeecceecccCC--CCCCcceeEEEEecchh
Q 020558          287 ELHVELNEEILQFPE--CDLPELRHLMFMLVHLI  318 (324)
Q Consensus       287 ~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~i  318 (324)
                      +.-.........+|+  +.|+.|++|+|+-...|
T Consensus       319 evf~aanN~LElVPEglcRC~kL~kL~L~~NrLi  352 (1255)
T KOG0444|consen  319 EVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI  352 (1255)
T ss_pred             HHHHhhccccccCchhhhhhHHHHHhccccccee
Confidence            332222213444555  55555555555444433

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.77  E-value=0.0063  Score=54.75  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             cCCCCChHHHHHHHhcCC-hhHHHHhhhcccchhhcccc
Q 020558           16 WVSRLPDDILVNIISRLT-LKEAARTSVLSSRWKYLWTY   53 (324)
Q Consensus        16 ~~s~LPd~vl~~Ils~L~-~~d~~r~s~vsk~W~~lw~~   53 (324)
                      .+++||+|+|..|..+|+ .-|++|.++||+.||..-..
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            478999999999999997 68999999999999985443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.69  E-value=0.0039  Score=54.31  Aligned_cols=36  Identities=31%  Similarity=0.581  Sum_probs=34.4

Q ss_pred             cccCCCCC----hHHHHHHHhcCChhHHHHhhhcccchhh
Q 020558           14 KDWVSRLP----DDILVNIISRLTLKEAARTSVLSSRWKY   49 (324)
Q Consensus        14 ~d~~s~LP----d~vl~~Ils~L~~~d~~r~s~vsk~W~~   49 (324)
                      .|.+..||    |+|...|||||+..++..|..|||+|++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            58899999    9999999999999999999999999986

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.65  E-value=0.024  Score=51.73  Aligned_cols=88  Identities=18%  Similarity=0.186  Sum_probs=43.2

Q ss_pred             CCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcce
Q 020558          166 SLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGP  244 (324)
Q Consensus       166 ~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~  244 (324)
                      +|++|.+.++. ++  .+...+  .++|++|.+.+|..+..+     .++|+.|.+. +.....+.---++|+.|.+.+.
T Consensus        73 sLtsL~Lsnc~nLt--sLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~-~n~~~~L~~LPssLk~L~I~~~  142 (426)
T PRK15386         73 ELTEITIENCNNLT--TLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIK-GSATDSIKNVPNGLTSLSINSY  142 (426)
T ss_pred             CCcEEEccCCCCcc--cCCchh--hhhhhheEccCccccccc-----ccccceEEeC-CCCCcccccCcchHhheecccc
Confidence            47777776653 21  111111  256777777777554421     1467777765 2223333332356777766432


Q ss_pred             eeE--EeeC--CCCCceEEEEec
Q 020558          245 EIK--LHVK--NVPQLVDVLIGG  263 (324)
Q Consensus       245 ~~~--~~~~--~~~~L~~l~l~~  263 (324)
                      ...  ..+.  -.++|+.+.+..
T Consensus       143 n~~~~~~lp~~LPsSLk~L~Is~  165 (426)
T PRK15386        143 NPENQARIDNLISPSLKTLSLTG  165 (426)
T ss_pred             ccccccccccccCCcccEEEecC
Confidence            211  0001  124677777764

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.35  E-value=0.0091  Score=51.61  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             cccCCCCChHHHHHHHhc-----CChhHHHHhhhcccchhh
Q 020558           14 KDWVSRLPDDILVNIISR-----LTLKEAARTSVLSSRWKY   49 (324)
Q Consensus        14 ~d~~s~LPd~vl~~Ils~-----L~~~d~~r~s~vsk~W~~   49 (324)
                      -+.|+.||||||..||..     ++++++.++|+|||.|..
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            355789999999999965     567999999999999975

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.11  E-value=0.022  Score=56.53  Aligned_cols=13  Identities=15%  Similarity=0.105  Sum_probs=9.1

Q ss_pred             CCceEEEEEeeec
Q 020558          281 PQLKTLELHVELN  293 (324)
Q Consensus       281 ~~L~~L~l~~~~~  293 (324)
                      ++|+.|+|+.+.+
T Consensus       342 ~~Lq~LdLS~N~L  354 (788)
T PRK15387        342 SGLQELSVSDNQL  354 (788)
T ss_pred             cccceEecCCCcc
Confidence            4778888876654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.94  E-value=0.034  Score=55.24  Aligned_cols=11  Identities=27%  Similarity=0.214  Sum_probs=5.6

Q ss_pred             CCceEEEEEee
Q 020558          281 PQLKTLELHVE  291 (324)
Q Consensus       281 ~~L~~L~l~~~  291 (324)
                      ++|+.|+++.+
T Consensus       382 ~~L~~LdLs~N  392 (788)
T PRK15387        382 SGLKELIVSGN  392 (788)
T ss_pred             cccceEEecCC
Confidence            34555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.77  E-value=0.0012  Score=53.49  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=35.8

Q ss_pred             CCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEEEe--cccCCccEEEEecCC
Q 020558          163 RVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV--GSLLQLKCLHIDHCN  224 (324)
Q Consensus       163 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~i~~c~  224 (324)
                      .++.++.|.|.+|. +.|..++.|-.-.|+||+|+|++|+.++.-.+.  ..+++|+.|.|.+-+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            45666666666666 666666666556667777777776655542221  233555555555433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.56  E-value=0.038  Score=35.95  Aligned_cols=38  Identities=29%  Similarity=0.301  Sum_probs=17.7

Q ss_pred             cccCCCceEEEEEeeecceecccCCCCCCcceeEEEEe
Q 020558          277 VNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFML  314 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  314 (324)
                      +..+++|+.|+++.+.+..+..-....+++|++|+++.
T Consensus        21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred             HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence            34556666666664443111110114555666665543

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.34  E-value=0.01  Score=31.41  Aligned_cols=20  Identities=30%  Similarity=0.303  Sum_probs=18.1

Q ss_pred             CCcceeEEEEecchhhhccC
Q 020558          304 LPELRHLMFMLVHLIVAASL  323 (324)
Q Consensus       304 ~~~L~~L~l~~~~~i~~~~~  323 (324)
                      |++|++|.|..|..|+|.++
T Consensus         1 c~~L~~L~l~~C~~itD~gl   20 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGL   20 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHH
Confidence            68999999999999999875

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.20  E-value=0.03  Score=29.53  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=13.8

Q ss_pred             CCCCcEEEeeeEE-eCHHHHHHHH
Q 020558          164 VKSLRFLYFDTVN-VTEEILEFFI  186 (324)
Q Consensus       164 ~~~L~~L~L~~~~-~~~~~l~~ll  186 (324)
                      ||+|++|+|.+|. ++|.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            4566666666665 6666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.99  E-value=0.18  Score=46.25  Aligned_cols=134  Identities=25%  Similarity=0.318  Sum_probs=68.6

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCC-ccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCP-NLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF  242 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~  242 (324)
                      ++++++|+++++.+..  +.    ..| +|++|.+.+|..++.+.- .-.+.|++|.+++|..+..+   .++|+.|.+.
T Consensus        51 ~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~  120 (426)
T PRK15386         51 ARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGL---PESVRSLEIK  120 (426)
T ss_pred             hcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccc---ccccceEEeC
Confidence            5677777777664321  11    122 477777777766543211 11246777777777655432   2466667665


Q ss_pred             ceeeEEeeCCC-CCceEEEEecccCCcccceeccccccC-CCceEEEEEeeecceecccCCCCCCcceeEEEEec
Q 020558          243 GPEIKLHVKNV-PQLVDVLIGGGHGIGKGKVIGPIVNYF-PQLKTLELHVELNEEILQFPECDLPELRHLMFMLV  315 (324)
Q Consensus       243 ~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  315 (324)
                      +.... .+..+ ++|+++.+...... ..   ..+...+ ++|+.|.+..+..   ...|..--..|++|.++.+
T Consensus       121 ~n~~~-~L~~LPssLk~L~I~~~n~~-~~---~~lp~~LPsSLk~L~Is~c~~---i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        121 GSATD-SIKNVPNGLTSLSINSYNPE-NQ---ARIDNLISPSLKTLSLTGCSN---IILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CCCCc-ccccCcchHhheeccccccc-cc---cccccccCCcccEEEecCCCc---ccCcccccccCcEEEeccc
Confidence            43221 12232 34666655321100 00   0111112 6799999986543   2334322258999988664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.94  E-value=0.024  Score=34.29  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=25.7

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCC
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSD  201 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  201 (324)
                      ++|++|+|.+..|++  +...++.||+|+.|++.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578888888888764  55547788999999988873

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=93.62  E-value=0.0037  Score=59.12  Aligned_cols=43  Identities=19%  Similarity=0.169  Sum_probs=28.9

Q ss_pred             cCCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC
Q 020558          156 KSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS  200 (324)
Q Consensus       156 ~l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  200 (324)
                      .+|+.+-.+..|+.|+|++..+.+-  ..-+....++-.|+|++-
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVLNLS~N  136 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVLNLSYN  136 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEEEcccC
Confidence            4566677888999999988776431  111344567778888764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=93.00  E-value=0.091  Score=34.10  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeee
Q 020558          234 PSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVEL  292 (324)
Q Consensus       234 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  292 (324)
                      |+|+.|.+.+....    -.+.++++|+.+++......   ..-.+.+..+++|+.|.++.+.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~---~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT---SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES---EEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC---ccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555444221    24567788888887742111   1122345688888888887653

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.81  E-value=0.25  Score=40.44  Aligned_cols=81  Identities=22%  Similarity=0.269  Sum_probs=52.1

Q ss_pred             CCCCCCCcEEEeeeEEeCH--HHHHHHHHcCCccceeEeecCC--CcceEEEecccCCccEEEEecCCC-----cceEEE
Q 020558          161 LSRVKSLRFLYFDTVNVTE--EILEFFINNCPNLDDLRVGRSD--NLLRLKVVGSLLQLKCLHIDHCNN-----LEELEI  231 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~l~~c~--~~~~l~i~~~~~~L~~L~i~~c~~-----l~~l~i  231 (324)
                      +.++++|.+|.|.+.+|+.  ..+...   .|+|..|.+.+-+  .+.++.=...||+|++|.+-+-+.     .....+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl  136 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL  136 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence            4578889999998888663  445543   4888888888743  233333334678888888765441     222333


Q ss_pred             -ecCCccEEEEcce
Q 020558          232 -SCPSLLSFKYFGP  244 (324)
Q Consensus       232 -~~p~L~~L~~~~~  244 (324)
                       -.|+|+.|.+.+.
T Consensus       137 ~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  137 YKLPSLRTLDFQKV  150 (233)
T ss_pred             EecCcceEeehhhh
Confidence             3488888887654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.15  E-value=0.02  Score=46.66  Aligned_cols=61  Identities=13%  Similarity=0.191  Sum_probs=45.4

Q ss_pred             cEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcceE
Q 020558          168 RFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEEL  229 (324)
Q Consensus       168 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~l  229 (324)
                      +.+.-+++.|..++++. +.+++.++.|.+.+|..+.++   .+....++|+.|+|++|+.+..-
T Consensus       104 eaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             EEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence            44555555677777887 789999999999999877653   23345589999999999865443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.93  E-value=0.039  Score=47.75  Aligned_cols=62  Identities=15%  Similarity=0.171  Sum_probs=40.2

Q ss_pred             CCCCCcEEEeeeEEeCHH-HHHHHHHcCCccceeEeecCCCcceEE-EecccCCccEEEEecCC
Q 020558          163 RVKSLRFLYFDTVNVTEE-ILEFFINNCPNLDDLRVGRSDNLLRLK-VVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~i~~c~  224 (324)
                      .+.+++.|+|.+..+++. .+.+|+...|.|+.|++..-.-...+. .+.+..+|+.|.+.+..
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG  132 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence            467888888888887764 588888888888888887543222211 11234567777766543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.92  E-value=0.0027  Score=54.11  Aligned_cols=16  Identities=31%  Similarity=0.439  Sum_probs=7.5

Q ss_pred             cccCCCceEEEEEeee
Q 020558          277 VNYFPQLKTLELHVEL  292 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~  292 (324)
                      ++++|+|+.|.|..+.
T Consensus        84 LknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENP   99 (388)
T ss_pred             HhcCchhhhHhhccCC
Confidence            3444555555544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.70  E-value=0.023  Score=48.50  Aligned_cols=146  Identities=16%  Similarity=0.114  Sum_probs=78.6

Q ss_pred             CCCCCCCCCcEEEeeeEEeCH---HHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcceEEEe
Q 020558          159 CGLSRVKSLRFLYFDTVNVTE---EILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEELEIS  232 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~l~i~  232 (324)
                      +.+..||+|....|+...|+.   +.+..+++....|+.|.+.+|. .+..   +|..   -|.+|-.      .+-.-+
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk---al~~la~------nKKaa~  155 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK---ALFHLAY------NKKAAD  155 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH---HHHHHHH------Hhhhcc
Confidence            345679999999999887764   4588889999999999999983 2111   1111   1112111      111234


Q ss_pred             cCCccEEEEcceeeE--------EeeCCCCCceEEEEeccc-CC--cccceeccccccCCCceEEEEEeeecceecc---
Q 020558          233 CPSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGH-GI--GKGKVIGPIVNYFPQLKTLELHVELNEEILQ---  298 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~-~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---  298 (324)
                      .|.|+++.+......        ..+..--+|.++.+.... ..  .....+-. +..+.+|+.|+|+++.. ....   
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~g-l~y~~~LevLDlqDNtf-t~~gS~~  233 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLG-LFYSHSLEVLDLQDNTF-TLEGSRY  233 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHH-HHHhCcceeeeccccch-hhhhHHH
Confidence            566666655443221        012222456666655311 10  01111111 34667777777777765 2111   


Q ss_pred             cCC--CCCCcceeEEEEecc
Q 020558          299 FPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       299 ~~~--~~~~~L~~L~l~~~~  316 (324)
                      +..  +.+++|+.|.+..|-
T Consensus       234 La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         234 LADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHhcccchhhhccccchh
Confidence            111  677777777777664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=91.63  E-value=0.02  Score=56.53  Aligned_cols=121  Identities=18%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCC--CcceEEEecccCCccEEEEecCCCcceE---EEecCCccE
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSD--NLLRLKVVGSLLQLKCLHIDHCNNLEEL---EISCPSLLS  238 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~--~~~~l~i~~~~~~L~~L~i~~c~~l~~l---~i~~p~L~~  238 (324)
                      ++.|..|.+.+..++|..+.- +-+.++|+.|+|++-.  ......+ ..++.|++|++++-. +..+   ...++.|++
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~-~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKL-RKLEELEELNLSGNK-LTTLPDTVANLGRLHT  434 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHH-hchHHhHHHhcccch-hhhhhHHHHhhhhhHH
Confidence            344555555555555443332 4445555555555431  1111001 112344444444322 2222   123355555


Q ss_pred             EEEcceee---EEeeCCCCCceEEEEeccc--CCcccceeccccccCCCceEEEEEeeec
Q 020558          239 FKYFGPEI---KLHVKNVPQLVDVLIGGGH--GIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       239 L~~~~~~~---~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      |...+...   | .+...++|+-++++...  .....+..     --|+||.|+++++..
T Consensus       435 L~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-----p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  435 LRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-----PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhC-----CCcccceeeccCCcc
Confidence            55544422   3 46667777777776411  11112211     117888998887764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.97  E-value=0.18  Score=25.81  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=16.0

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHH
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFI  186 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll  186 (324)
                      +++|++|+|+++.|+++++..|.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            47888999998888888877653

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=89.60  E-value=0.035  Score=54.97  Aligned_cols=152  Identities=22%  Similarity=0.232  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCcEEEeeeEEeCH---HH-------HHHHHHcCCccce--------------eEeecCC-CcceEEEeccc
Q 020558          158 PCGLSRVKSLRFLYFDTVNVTE---EI-------LEFFINNCPNLDD--------------LRVGRSD-NLLRLKVVGSL  212 (324)
Q Consensus       158 ~~~~~~~~~L~~L~L~~~~~~~---~~-------l~~ll~~cp~Le~--------------L~l~~c~-~~~~l~i~~~~  212 (324)
                      |+-..++++|++|.|....+..   ..       ++.+-.+|-.|+.              |.+.+-. ....+.+-...
T Consensus       303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~  382 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF  382 (1081)
T ss_pred             CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence            5555678999999999887542   21       2222223333332              3222211 00111222334


Q ss_pred             CCccEEEEecCCCcceEEE----ecCCccEEEEcceee---EEeeCCCCCceEEEEecccCCcccceeccccccCCCceE
Q 020558          213 LQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKT  285 (324)
Q Consensus       213 ~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~  285 (324)
                      ..||.|++++-. +..+.-    ..+.|+.|.++|...   +-.+.++++|+.+.-........+     =+..+++|+.
T Consensus       383 ~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-----e~~~l~qL~~  456 (1081)
T KOG0618|consen  383 KHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-----ELAQLPQLKV  456 (1081)
T ss_pred             cceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-----hhhhcCcceE
Confidence            677777776532 232221    224555666677643   234556777776655432111111     1458899999


Q ss_pred             EEEEeeecceecccCC-CCCCcceeEEEEecc
Q 020558          286 LELHVELNEEILQFPE-CDLPELRHLMFMLVH  316 (324)
Q Consensus       286 L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  316 (324)
                      ++++.+.. ..-..++ ..-++||+|+++-..
T Consensus       457 lDlS~N~L-~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  457 LDLSCNNL-SEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             Eecccchh-hhhhhhhhCCCcccceeeccCCc
Confidence            99999987 4444455 333899999986554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=89.51  E-value=0.18  Score=50.27  Aligned_cols=134  Identities=16%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEec-CCccEEEEcc
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC-PSLLSFKYFG  243 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~-p~L~~L~~~~  243 (324)
                      ++|++|+|.+..++.  +..-+  .+.|+.|.+.+|.-. .+... ....|+.|+++++ .+..+.-.. ++|+.|.+.+
T Consensus       220 ~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~-~LP~~-l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~  292 (754)
T PRK15370        220 GNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRIT-ELPER-LPSALQSLDLFHN-KISCLPENLPEELRYLSVYD  292 (754)
T ss_pred             cCCCEEECCCCcccc--CChhh--hccccEEECcCCccC-cCChh-HhCCCCEEECcCC-ccCccccccCCCCcEEECCC
Confidence            466666666655431  11101  235666766665321 11000 1135777777643 244433222 4677777666


Q ss_pred             eeeEEeeCC-CCCceEEEEecccCCcccceecccc-ccCCCceEEEEEeeecceecccCCCCCCcceeEEEEec
Q 020558          244 PEIKLHVKN-VPQLVDVLIGGGHGIGKGKVIGPIV-NYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLV  315 (324)
Q Consensus       244 ~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  315 (324)
                      ....-.-.. .++|+.+++....       +..++ ...++|+.|.++.+..   ..+|...+++|+.|.++.+
T Consensus       293 N~Lt~LP~~lp~sL~~L~Ls~N~-------Lt~LP~~l~~sL~~L~Ls~N~L---t~LP~~l~~sL~~L~Ls~N  356 (754)
T PRK15370        293 NSIRTLPAHLPSGITHLNVQSNS-------LTALPETLPPGLKTLEAGENAL---TSLPASLPPELQVLDVSKN  356 (754)
T ss_pred             CccccCcccchhhHHHHHhcCCc-------cccCCccccccceeccccCCcc---ccCChhhcCcccEEECCCC
Confidence            532210001 1234444444311       11111 1236889998887754   3344433468999998776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.31  E-value=0.023  Score=49.15  Aligned_cols=150  Identities=11%  Similarity=0.114  Sum_probs=92.4

Q ss_pred             CCCcEEEeeeEEeCH-HHHHHHHHcCCccceeEeecCC---CcceEEEecccCCccEEEEecCCC---cceEEEecCCcc
Q 020558          165 KSLRFLYFDTVNVTE-EILEFFINNCPNLDDLRVGRSD---NLLRLKVVGSLLQLKCLHIDHCNN---LEELEISCPSLL  237 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~---~~~~l~i~~~~~~L~~L~i~~c~~---l~~l~i~~p~L~  237 (324)
                      .-+.-|.+.++.|.. +++..+-+.|..+++|+|.+-.   |...-.|-...|.|+.|++++-+-   +..+.+...+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            345677888888765 4577778899999999999742   222223444568999999975431   223334446999


Q ss_pred             EEEEcceeeEE-----eeCCCCCceEEEEecc-c--CCcc-----------------------cceeccccccCCCceEE
Q 020558          238 SFKYFGPEIKL-----HVKNVPQLVDVLIGGG-H--GIGK-----------------------GKVIGPIVNYFPQLKTL  286 (324)
Q Consensus       238 ~L~~~~~~~~~-----~~~~~~~L~~l~l~~~-~--~~~~-----------------------~~~~~~l~~~~~~L~~L  286 (324)
                      ++-+.|...++     .+.+.|.++++.++.. +  ....                       .....++..-+|++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            99999886542     4667788888765541 1  0000                       11234455678888888


Q ss_pred             EEEeeecceecccCC--CCCCcceeEEEEec
Q 020558          287 ELHVELNEEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       287 ~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      .+..+.. +......  ..|+.+--|+|+..
T Consensus       205 ~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~~  234 (418)
T KOG2982|consen  205 FVCEGPL-KTESSEKGSEPFPSLSCLNLGAN  234 (418)
T ss_pred             eeecCcc-cchhhcccCCCCCcchhhhhccc
Confidence            8887765 2222222  45565555655443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=88.28  E-value=0.2  Score=47.94  Aligned_cols=38  Identities=24%  Similarity=0.481  Sum_probs=35.5

Q ss_pred             ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558           13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL   50 (324)
Q Consensus        13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l   50 (324)
                      ..|.++.||-++..+||++|+.++++++++||+.|+.+
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            46899999999999999999999999999999999853

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=87.38  E-value=0.41  Score=47.84  Aligned_cols=73  Identities=12%  Similarity=0.118  Sum_probs=37.7

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEec-CCccEEEEcc
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC-PSLLSFKYFG  243 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~-p~L~~L~~~~  243 (324)
                      ++|+.|.|.++.+..  +..-+  ..+|+.|++.++ .++.+.- ...+.|+.|+++++. +..+.-.. ++|+.|.+.+
T Consensus       241 ~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N-~L~~LP~-~l~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~  313 (754)
T PRK15370        241 DTIQEMELSINRITE--LPERL--PSALQSLDLFHN-KISCLPE-NLPEELRYLSVYDNS-IRTLPAHLPSGITHLNVQS  313 (754)
T ss_pred             ccccEEECcCCccCc--CChhH--hCCCCEEECcCC-ccCcccc-ccCCCCcEEECCCCc-cccCcccchhhHHHHHhcC
Confidence            467888887776542  11111  246888888754 2322211 112467777777663 44432222 3455555554


Q ss_pred             e
Q 020558          244 P  244 (324)
Q Consensus       244 ~  244 (324)
                      .
T Consensus       314 N  314 (754)
T PRK15370        314 N  314 (754)
T ss_pred             C
Confidence            4

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=86.83  E-value=0.011  Score=46.84  Aligned_cols=39  Identities=31%  Similarity=0.477  Sum_probs=20.9

Q ss_pred             CCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEee
Q 020558          158 PCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVG  198 (324)
Q Consensus       158 ~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~  198 (324)
                      |+.++.+.+|+.|+|.+..+.+  +--=+++.|.|+.|++.
T Consensus        49 ppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvg   87 (264)
T KOG0617|consen   49 PPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVG   87 (264)
T ss_pred             CCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecc
Confidence            4445556666666666655432  22225555666665554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=85.42  E-value=0.38  Score=44.21  Aligned_cols=140  Identities=19%  Similarity=0.203  Sum_probs=80.9

Q ss_pred             CCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEe--cCC-ccEEEEc
Q 020558          166 SLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS--CPS-LLSFKYF  242 (324)
Q Consensus       166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~--~p~-L~~L~~~  242 (324)
                      +|+.|++.+..+..  +..-+..+|+|+.|.+.++.-..........+.|+.|.+++.. +..+.-.  .++ |+++.+.
T Consensus       141 nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence            88888888777643  2122667899999999988543322221133788888887654 4554432  344 7777776


Q ss_pred             cee-eE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          243 GPE-IK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       243 ~~~-~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      +.. ..  ..+.+.+++..+.+.....    ..+...+..+++++.|.++.+.+   ...+. ....+|++|.++..
T Consensus       218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~~~~~~~l~~l~~L~~s~n~i---~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         218 NNSIIELLSSLSNLKNLSGLELSNNKL----EDLPESIGNLSNLETLDLSNNQI---SSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             CCcceecchhhhhcccccccccCCcee----eeccchhccccccceeccccccc---cccccccccCccCEEeccCc
Confidence            662 22  2344455555544322000    00124456777788888877653   33333 66677777777553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=84.86  E-value=1.3  Score=39.48  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=24.0

Q ss_pred             CCCCCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRS  200 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c  200 (324)
                      +.+||+|+.|+|....|+-++   +...++..|+|++|++.+|
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            345666666666666655432   4455666666666666666

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=84.64  E-value=1.3  Score=36.49  Aligned_cols=56  Identities=20%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             CCccEEEEcceeeE-----EeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEEe
Q 020558          234 PSLLSFKYFGPEIK-----LHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELHV  290 (324)
Q Consensus       234 p~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~  290 (324)
                      |+|.+|.+.+....     -.++.||.|+.+.+-+ +......|.. .++-.+|+|+.|+++-
T Consensus        88 p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~-yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   88 PNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL-YVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee-EEEEecCcceEeehhh
Confidence            45555555544321     1345566666666554 2222222222 2334666677666653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=84.56  E-value=0.55  Score=28.26  Aligned_cols=17  Identities=29%  Similarity=0.425  Sum_probs=9.9

Q ss_pred             cccCCCceEEEEEeeec
Q 020558          277 VNYFPQLKTLELHVELN  293 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~~  293 (324)
                      +..+++|+.|.++.+..
T Consensus        20 l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             GTTCTTSSEEEETSSCC
T ss_pred             HhCCCCCCEEEecCCCC
Confidence            34566666666665544

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=83.81  E-value=1  Score=45.91  Aligned_cols=41  Identities=24%  Similarity=0.227  Sum_probs=19.2

Q ss_pred             CCCCCcEEEeeeEEe-CHHHHHHHHHcCCccceeEeecCCCc
Q 020558          163 RVKSLRFLYFDTVNV-TEEILEFFINNCPNLDDLRVGRSDNL  203 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~l~~c~~~  203 (324)
                      .+|.|++|-+.+..- -...-...+...|.|..|++.+|...
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l  584 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL  584 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence            455666666655431 00001111344566666666665443

>PF13013 F-box-like_2: F-box-like domain

Probab=83.77  E-value=0.74  Score=33.85  Aligned_cols=30  Identities=17%  Similarity=-0.028  Sum_probs=26.8

Q ss_pred             cCCCCChHHHHHHHhcCChhHHHHhhhccc
Q 020558           16 WVSRLPDDILVNIISRLTLKEAARTSVLSS   45 (324)
Q Consensus        16 ~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk   45 (324)
                      .+.+||+||+..|+.+-.-.++...+..|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            478899999999999999999988887776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 47/313 (15%), Positives = 89/313 (28%), Gaps = 84/313 (26%)

Query: 67  NVYEETIEEERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQ 126
           ++            + W    L S +   V +F+     ++    N   ++ + I    +
Sbjct: 53  HIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFV-----EEVLRINYK-FLMSPIKTEQR 103

Query: 127 KFELN--LFPALCWPPASGIYEFSQG------CYDYLKS------P-----------CG- 160
           +  +   ++        +    F++        Y  L+       P            G 
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 161 ----LSRVKSLRF----------LYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL 206
               L    S +           L     N  E +LE        +D     RSD+   +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 207 KV--------VGSLLQLK----CLHI-DHCNNLEELE---ISCPSLLSFKYFGPEIKLHV 250
           K+        +  LL+ K    CL +  +  N +      +SC  LL+ ++         
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--------- 274

Query: 251 KNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHL 310
           K V    D L                +++     T +    L  + L     DLP     
Sbjct: 275 KQV---TDFLSAA-------TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 311 MFMLVHLIVAASL 323
                  I+A S+
Sbjct: 325 TNPRRLSIIAESI 337

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 56/357 (15%), Positives = 117/357 (32%), Gaps = 81/357 (22%)

Query: 2   SSSNIRDKDEALKDWVSRL------PDDILV-------NIISRLTLKEAARTSVLSSRWK 48
            SSNI+ +  +++  + RL       + +LV          +   L    +  +L++R+K
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKI-LLTTRFK 275

Query: 49  YLWTYASNLNFDASKLLVNVYEETIEEERLRYMC--WVNKVLES--HKSLSVNEF---II 101
            +  + S      + + ++ +  T+  + ++ +   +++   +    + L+ N     II
Sbjct: 276 QVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 102 VFDLDDSHESNISHWVYTAISKRAQKFEL---NLFPALCWPPASGIYEFSQGCYDYL--- 155
              + D   +   +W +    K     E     L PA          E+ +  +D L   
Sbjct: 334 AESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPA----------EY-RKMFDRLSVF 381

Query: 156 ----KSPCGLSRVKSLRFLYFD-TVNVTEEILEFFINNC---PNLDDLRVGRSDNLLRLK 207
                 P        L  ++FD   +    ++              +  +      L LK
Sbjct: 382 PPSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 208 VVGSLLQLKCLH---IDHCNNLEELEI-SCPSLLSFKYFGPEIKLHVKNVPQ-------- 255
           V   L     LH   +DH N  +  +          +YF   I  H+KN+          
Sbjct: 437 V--KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 256 --LVDV------LIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDL 304
              +D       +             G I+N   QLK  + ++  N+   +     +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWN---ASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 44/239 (18%), Positives = 74/239 (30%), Gaps = 70/239 (29%)

Query: 94  LSVNEFIIVFDLD-----DSHESNISHWVYTAISKRAQKFE--LNLFPALCWPPASGIYE 146
           LSV E   V + D     D  +S +S      I          L LF  L       + +
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 147 FSQGC----YDYLKSPCGL-SRVKSLRF-LYFDTVNVTEEILEFFINNCPNLDDLRVGRS 200
           F +      Y +L SP     R  S+   +Y +  +          N+        V R 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------NDNQVFAKYNVSRL 134

Query: 201 DNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVL 260
              L+L+   +LL+L+                 P           + +            
Sbjct: 135 QPYLKLR--QALLELR-----------------P--------AKNVLID----------- 156

Query: 261 IGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEI--LQFPECDLPELRHLMFMLVHL 317
             G  G GK  V   +        + ++  +++ +I  L    C+ PE   ++ ML  L
Sbjct: 157 --GVLGSGKTWVALDV------CLSYKVQCKMDFKIFWLNLKNCNSPET--VLEMLQKL 205

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 34/236 (14%)

Query: 18  SRLPDDILVNIISRLTLKEAARTSVLSSRWKYL---WTYASNLNFDASKLLVNVYEETIE 74
             LPD++L+ I S L L E  + S +  RW  L    +    L+     L  +V    + 
Sbjct: 10  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS 69

Query: 75  EERLRYMCWVNKVLESHKSLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFE-LNLF 133
           +  + + C  + + +          +   DL +   S I       I  +  K + L+L 
Sbjct: 70  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN---SVIEVSTLHGILSQCSKLQNLSL- 125

Query: 134 PALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYF-DTVNVTEEILEFFINNCPNL 192
                          +G          L++  +L  L        +E  L+  +++C  L
Sbjct: 126 ---------------EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 193 DDLRVGR----SDNLLRLKVVGSLLQLKCLHIDHCNN------LEELEISCPSLLS 238
           D+L +      ++  +++ V      +  L++           L  L   CP+L+ 
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.01
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.7
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.67
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.12
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.1
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.1
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.06
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.03
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.02
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.01
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.99
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.85
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.83
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.72
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.69
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.62
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.58
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.54
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.53
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.45
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.43
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.37
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.27
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.27
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.24
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.19
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.18
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.94
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.91
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.73
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.59
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.19
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.69
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	95.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	95.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.35
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.01
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.91
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	94.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.1
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	93.74
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	92.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	92.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	87.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	86.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	83.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	82.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	81.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	81.79

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=8.5e-21  Score=169.16  Aligned_cols=261  Identities=18%  Similarity=0.207  Sum_probs=160.4

Q ss_pred             ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhcccc---CceeeEeccccccccchhhHHHHHHHHHHHHHHHHh
Q 020558           13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTY---ASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLE   89 (324)
Q Consensus        13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw~~---~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~   89 (324)
                      ....|++|||||+.+||+||+.+|+++++.|||+|+++...   ...+++....+.+               ..+...+.
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~---------------~~~~~~~~   69 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP---------------DVTGRLLS   69 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH---------------HHHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCH---------------HHHHhhhh
Confidence            34578999999999999999999999999999999987321   2226665544331               11222211


Q ss_pred             hcCCCCccEEEEEEe-CCCCCcchHHHHHHHHHhcCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCCCCCCCCc
Q 020558           90 SHKSLSVNEFIIVFD-LDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLR  168 (324)
Q Consensus        90 ~~~~~~l~~l~l~~~-~~~~~~~~v~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~L~  168 (324)
                          ..++.+.+... .......       .....++++|++..+.            +.     ...++..+..+++|+
T Consensus        70 ----~~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~------------l~-----~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           70 ----QGVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSV------------IE-----VSTLHGILSQCSKLQ  121 (336)
T ss_dssp             ----TTCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCE------------EC-----HHHHHHHHTTBCCCS
T ss_pred             ----ccceEEEcCCccccccchh-------hccCCCCCEEEccCCC------------cC-----HHHHHHHHhhCCCCC
Confidence                11555544221 0110000       0112467777774321            00     000122245688999


Q ss_pred             EEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcce-----EEEecC-CccEE
Q 020558          169 FLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEE-----LEISCP-SLLSF  239 (324)
Q Consensus       169 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~-----l~i~~p-~L~~L  239 (324)
                      +|+|.++.+++..... ++.|++|++|++.+|..++..   .+...+++|++|++++|..+..     +.-..| +|+.|
T Consensus       122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            9999998888766655 566999999999998655431   1223568999999998854443     123457 99999


Q ss_pred             EEcceee-------EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEE
Q 020558          240 KYFGPEI-------KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLM  311 (324)
Q Consensus       240 ~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~  311 (324)
                      .+.++..       +..+.++++|+.+++..... ..+..+ ..+..+++|+.|.++.+.......... ..+++|++|.
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  278 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  278 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc-CCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence            9988631       12456789999999876221 111112 234577999999998775211122222 6789999999


Q ss_pred             EEecchhhhc
Q 020558          312 FMLVHLIVAA  321 (324)
Q Consensus       312 l~~~~~i~~~  321 (324)
                      ++.+  +++.
T Consensus       279 l~~~--i~~~  286 (336)
T 2ast_B          279 VFGI--VPDG  286 (336)
T ss_dssp             CTTS--SCTT
T ss_pred             ccCc--cCHH
Confidence            9876  5554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.79  E-value=5.1e-21  Score=183.33  Aligned_cols=194  Identities=17%  Similarity=0.247  Sum_probs=119.7

Q ss_pred             cccCCCCChHHHHHHHhcCC-hhHHHHhhhcccchhhcccc-CceeeEeccccccccchhhHHHHHHHHHHHHHHHHhhc
Q 020558           14 KDWVSRLPDDILVNIISRLT-LKEAARTSVLSSRWKYLWTY-ASNLNFDASKLLVNVYEETIEEERLRYMCWVNKVLESH   91 (324)
Q Consensus        14 ~d~~s~LPd~vl~~Ils~L~-~~d~~r~s~vsk~W~~lw~~-~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~   91 (324)
                      .|.|+.||||||.+||+||+ .+|++++++|||+|+++... ...+.+.......                 ....+...
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~-----------------~~~~~~~~   65 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS-----------------PATVIRRF   65 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC-----------------HHHHHHHC
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC-----------------HHHHHhhC
Confidence            58999999999999999999 99999999999999987211 1224443221110                 01222232


Q ss_pred             CCCCccEEEEEEeCCC--------CCcchHHHHHHHHHh--cCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCC
Q 020558           92 KSLSVNEFIIVFDLDD--------SHESNISHWVYTAIS--KRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGL  161 (324)
Q Consensus        92 ~~~~l~~l~l~~~~~~--------~~~~~v~~wl~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~  161 (324)
                        +.++++.+......        .....+..|+.....  +++++|++..+...    ......+             .
T Consensus        66 --~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~----~~~~~~l-------------~  126 (594)
T 2p1m_B           66 --PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT----DDCLELI-------------A  126 (594)
T ss_dssp             --TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC----HHHHHHH-------------H
T ss_pred             --CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc----HHHHHHH-------------H
Confidence              33888888764211        011345678876653  48999999754211    0000001             1


Q ss_pred             CCCCCCcEEEeeeE-EeCHHHHHHHHHcCCccceeEeecCCCcce-----E-EEecccCCccEEEEecCC-C-----cce
Q 020558          162 SRVKSLRFLYFDTV-NVTEEILEFFINNCPNLDDLRVGRSDNLLR-----L-KVVGSLLQLKCLHIDHCN-N-----LEE  228 (324)
Q Consensus       162 ~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-----l-~i~~~~~~L~~L~i~~c~-~-----l~~  228 (324)
                      ..|++|++|+|.++ .+++..+..++.+||+|++|++.+|. ++.     + .+...+++|++|++++|. .     +..
T Consensus       127 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (594)
T 2p1m_B          127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER  205 (594)
T ss_dssp             HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred             HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence            14799999999999 58888899999999999999999985 211     1 122355788888888775 1     112


Q ss_pred             EEEecCCccEEEEcce
Q 020558          229 LEISCPSLLSFKYFGP  244 (324)
Q Consensus       229 l~i~~p~L~~L~~~~~  244 (324)
                      +...+|+|++|.+.++
T Consensus       206 l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          206 LVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHHCTTCCEEECCTT
T ss_pred             HHHhCCCCcEEecCCC
Confidence            2224577777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=7.3e-19  Score=168.33  Aligned_cols=97  Identities=8%  Similarity=0.185  Sum_probs=59.9

Q ss_pred             CCCChHHHHHHHhcC-ChhHHHHhhhcccchhhccccCce-eeEeccccccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 020558           18 SRLPDDILVNIISRL-TLKEAARTSVLSSRWKYLWTYASN-LNFDASKLLVNVYEETIEEERLRYMCWVNKVLESHKSLS   95 (324)
Q Consensus        18 s~LPd~vl~~Ils~L-~~~d~~r~s~vsk~W~~lw~~~~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~   95 (324)
                      +.||||||.+||+|| +.+|++++++|||+|++++...+. +.+. ..+.                .....++...+.  
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~----------------~~~~~~~~~~~~--   74 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYT----------------ATPDRLSRRFPN--   74 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGG----------------SCHHHHHHHCTT--
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccc----------------cChHHHHHhCCC--
Confidence            489999999999999 799999999999999998543221 2221 1111                112233333333  


Q ss_pred             ccEEEEEEeCC--------CCCcchHHHHHHHHH--hcCceEEEEEcC
Q 020558           96 VNEFIIVFDLD--------DSHESNISHWVYTAI--SKRAQKFELNLF  133 (324)
Q Consensus        96 l~~l~l~~~~~--------~~~~~~v~~wl~~~~--~~~l~~L~l~~~  133 (324)
                      ++++.+..+..        .........|+....  .+++++|++..+
T Consensus        75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  122 (592)
T 3ogk_B           75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM  122 (592)
T ss_dssp             CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc
Confidence            88888865321        011223455666554  247888888654

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.01  E-value=1.7e-10  Score=73.13  Aligned_cols=38  Identities=34%  Similarity=0.455  Sum_probs=32.9

Q ss_pred             ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558           13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL   50 (324)
Q Consensus        13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l   50 (324)
                      ..+.++.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~   42 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL   42 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999975

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.81  E-value=3.6e-09  Score=93.62  Aligned_cols=152  Identities=20%  Similarity=0.222  Sum_probs=105.4

Q ss_pred             CCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEe----------cccCCccEEEEecCCCc
Q 020558          157 SPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV----------GSLLQLKCLHIDHCNNL  226 (324)
Q Consensus       157 l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~----------~~~~~L~~L~i~~c~~l  226 (324)
                      +|..+..+++|++|+|.+..++  .+..-+..+++|++|++.+|...+.+...          ..+++|++|+++++. +
T Consensus       119 lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l  195 (328)
T 4fcg_A          119 LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-I  195 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-C
T ss_pred             hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-c
Confidence            3455678899999999988876  33333678999999999998654432111          135899999998875 3


Q ss_pred             ceEE---EecCCccEEEEcceeeE---EeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEEeeecceeccc
Q 020558          227 EELE---ISCPSLLSFKYFGPEIK---LHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF  299 (324)
Q Consensus       227 ~~l~---i~~p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  299 (324)
                      ..+.   -..++|+.|.+.+....   -.+.++++|+.+++.. ......    ...+..+++|+.|.++.+..  ....
T Consensus       196 ~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~~--~~~~  269 (328)
T 4fcg_A          196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY----PPIFGGRAPLKRLILKDCSN--LLTL  269 (328)
T ss_dssp             CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC----CCCTTCCCCCCEEECTTCTT--CCBC
T ss_pred             CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh----HHHhcCCCCCCEEECCCCCc--hhhc
Confidence            3331   13478999998876432   2466788999998886 222222    22356789999999988763  4455


Q ss_pred             CC--CCCCcceeEEEEecch
Q 020558          300 PE--CDLPELRHLMFMLVHL  317 (324)
Q Consensus       300 ~~--~~~~~L~~L~l~~~~~  317 (324)
                      |.  ..+++|++|+|+.+..
T Consensus       270 p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          270 PLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CTTGGGCTTCCEEECTTCTT
T ss_pred             chhhhcCCCCCEEeCCCCCc
Confidence            55  7889999999987653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.74  E-value=3.1e-09  Score=101.41  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=22.0

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEee
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVG  198 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~  198 (324)
                      ..+++|++|+|.++.+++..+..++..||+|++|.+.
T Consensus       290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            3456666666666666655555555566666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.70  E-value=8.4e-10  Score=97.73  Aligned_cols=162  Identities=17%  Similarity=0.194  Sum_probs=116.3

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcce-EEEecccCCccEEEEecCCCcce-----EEEecC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLR-LKVVGSLLQLKCLHIDHCNNLEE-----LEISCP  234 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~i~~c~~l~~-----l~i~~p  234 (324)
                      +..+++|++|+|.++.+++..+..++..||+|++|++.+|.-... ...-..+++|++|++++|..+..     +.-.+|
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            346899999999999999888888899999999999999852211 11123468999999999964442     223569


Q ss_pred             CccEEEEcce-eeE-----EeeCCCC-CceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCc
Q 020558          235 SLLSFKYFGP-EIK-----LHVKNVP-QLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPE  306 (324)
Q Consensus       235 ~L~~L~~~~~-~~~-----~~~~~~~-~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~  306 (324)
                      +|+.|.+.++ ...     ..+.+++ +|+.+++........+..+..++..+++|+.|+++.+........+. ..+++
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~  248 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  248 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence            9999999887 332     2366789 99999998632122223344456789999999999876212222233 67899


Q ss_pred             ceeEEEEecchhhhcc
Q 020558          307 LRHLMFMLVHLIVAAS  322 (324)
Q Consensus       307 L~~L~l~~~~~i~~~~  322 (324)
                      |++|.++.+..+++.+
T Consensus       249 L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          249 LQHLSLSRCYDIIPET  264 (336)
T ss_dssp             CCEEECTTCTTCCGGG
T ss_pred             CCEeeCCCCCCCCHHH
Confidence            9999999988776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.67  E-value=7.5e-09  Score=91.56  Aligned_cols=204  Identities=15%  Similarity=0.118  Sum_probs=124.2

Q ss_pred             CCCccEEEEEEeCCCCCcchHHHHHHHHHhcCceEEEEEcCCCCCCCCCCcceeeCCCCcc--------cccCCCCCCCC
Q 020558           93 SLSVNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYD--------YLKSPCGLSRV  164 (324)
Q Consensus        93 ~~~l~~l~l~~~~~~~~~~~v~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~--------~l~l~~~~~~~  164 (324)
                      ...+..+.+....-.    .+...+.  .-.++++|++....-...+    .....+..+.        .-.+|..+..+
T Consensus        80 ~~~l~~L~L~~n~l~----~lp~~l~--~l~~L~~L~L~~n~l~~lp----~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP----QFPDQAF--RLSHLQHMTIDAAGLMELP----DTMQQFAGLETLTLARNPLRALPASIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS----SCCSCGG--GGTTCSEEEEESSCCCCCC----SCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred             ccceeEEEccCCCch----hcChhhh--hCCCCCEEECCCCCccchh----HHHhccCCCCEEECCCCccccCcHHHhcC
Confidence            344888887553211    1111111  1357999999765433111    0001111121        11457778889


Q ss_pred             CCCcEEEeeeEEeCHHHHHH--------HHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--E-ec
Q 020558          165 KSLRFLYFDTVNVTEEILEF--------FINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--I-SC  233 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~--------ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i-~~  233 (324)
                      ++|++|+|.++.+....-..        .+.++++|++|++.++.-......-..+++|++|+++++. +..+.  + ..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l  228 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHL  228 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGC
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccC
Confidence            99999999997633210001        1235899999999998432111112345899999999886 33331  2 34


Q ss_pred             CCccEEEEcceee----EEeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCc
Q 020558          234 PSLLSFKYFGPEI----KLHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPE  306 (324)
Q Consensus       234 p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~  306 (324)
                      ++|+.|.+.+...    +..+.++++|+.+++.. .......    .-+..+++|+.|+|+.+.  .....|.  ..+++
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~--~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----LDIHRLTQLEKLDLRGCV--NLSRLPSLIAQLPA  302 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC----TTGGGCTTCCEEECTTCT--TCCCCCGGGGGSCT
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc----hhhhcCCCCCEEeCCCCC--chhhccHHHhhccC
Confidence            8999999988532    33577899999999986 2222222    224688999999999877  4556666  77888


Q ss_pred             ceeEEEE
Q 020558          307 LRHLMFM  313 (324)
Q Consensus       307 L~~L~l~  313 (324)
                      |+.+.+.
T Consensus       303 L~~l~l~  309 (328)
T 4fcg_A          303 NCIILVP  309 (328)
T ss_dssp             TCEEECC
T ss_pred             ceEEeCC
Confidence            8888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=7.8e-09  Score=82.16  Aligned_cols=60  Identities=7%  Similarity=0.070  Sum_probs=37.9

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE---ec---ccCCccEEEEecCCC
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV---VG---SLLQLKCLHIDHCNN  225 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i---~~---~~~~L~~L~i~~c~~  225 (324)
                      ..|++|+++++.+++.++..+ ++|++|++|+|.+|..+++-.+   ..   .+++|++|++++|+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence            357777777777777777664 5777777777777766654222   11   134577777777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.48  E-value=1.2e-08  Score=97.32  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=26.2

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS  200 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  200 (324)
                      .+++|++|+|.++.+++..+..++..||+|++|.+.+|
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            35677777777766666666666667777777777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=9.5e-08  Score=75.91  Aligned_cols=67  Identities=10%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             CCCCCCcEEEeeeEE-eCHHHHHHHHH---cCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcce
Q 020558          162 SRVKSLRFLYFDTVN-VTEEILEFFIN---NCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEE  228 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~-~~~~~l~~ll~---~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~  228 (324)
                      .+|++|++|+|.+|. ++|.++..|..   .|+.||+|+|.+|..+++-.+  -..+++|++|++++|+.+..
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            479999999999997 99999999876   388999999999998875322  23579999999999986553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.30  E-value=2.5e-07  Score=82.08  Aligned_cols=144  Identities=24%  Similarity=0.317  Sum_probs=70.7

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCC---------------
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNN---------------  225 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~---------------  225 (324)
                      +..+++|++|++.++.+.+-  .. +..+++|++|++.+|.....+..-..+++|++|.+.+|..               
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  182 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDI--SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL  182 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             HcCCCcCCEEECcCCcccCc--hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence            34556666666665554321  11 4455666666665554333222122334444444444331               


Q ss_pred             ------cceEE--EecCCccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecce
Q 020558          226 ------LEELE--ISCPSLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEE  295 (324)
Q Consensus       226 ------l~~l~--i~~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  295 (324)
                            +..+.  -..++|+.+.+.+....  ..+..+++|+.+++.........    . +..+++|+.|+++.+..  
T Consensus       183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n~l--  255 (347)
T 4fmz_A          183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS----P-LANLSQLTWLEIGTNQI--  255 (347)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCC--
T ss_pred             EccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc----c-hhcCCCCCEEECCCCcc--
Confidence                  11111  11244555544443221  01445666666666542111111    1 56778888888877654  


Q ss_pred             ecccCC-CCCCcceeEEEEec
Q 020558          296 ILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       296 ~~~~~~-~~~~~L~~L~l~~~  315 (324)
                       ...+. ..+++|++|+++.+
T Consensus       256 -~~~~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          256 -SDINAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             -CCCGGGTTCTTCCEEECCSS
T ss_pred             -CCChhHhcCCCcCEEEccCC
Confidence             22233 67788888888766

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.27  E-value=2.2e-07  Score=75.64  Aligned_cols=140  Identities=18%  Similarity=0.278  Sum_probs=94.9

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcce--E-EE-ecCCccE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEE--L-EI-SCPSLLS  238 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~--l-~i-~~p~L~~  238 (324)
                      .+++|++|++.+..+++  +. -+..+++|++|++.+| ..+.+..-..+++|++|.++++. +..  . .+ ..|+|+.
T Consensus        42 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCE
Confidence            46788888888877653  22 1667888888888888 33333223356788888888765 221  1 11 3488888


Q ss_pred             EEEcceeeE----EeeCCCCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEE
Q 020558          239 FKYFGPEIK----LHVKNVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMF  312 (324)
Q Consensus       239 L~~~~~~~~----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l  312 (324)
                      |.+.+....    -.+.++++|+.+++.... ....     ..+..+++|+.|.++.+..   ...+. ..+++|++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-----~~l~~l~~L~~L~l~~n~i---~~~~~l~~l~~L~~L~l  188 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-----MPLKTLPELKSLNIQFDGV---HDYRGIEDFPKLNQLYA  188 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-----GGGGGCSSCCEEECTTBCC---CCCTTGGGCSSCCEEEE
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-----HhhcCCCCCCEEECCCCCC---cChHHhccCCCCCEEEe
Confidence            888776432    246789999999998632 2211     1367889999999988764   33334 78899999999


Q ss_pred             Eec
Q 020558          313 MLV  315 (324)
Q Consensus       313 ~~~  315 (324)
                      +..
T Consensus       189 ~~N  191 (197)
T 4ezg_A          189 FSQ  191 (197)
T ss_dssp             CBC
T ss_pred             eCc
Confidence            654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.24  E-value=5.3e-07  Score=78.56  Aligned_cols=63  Identities=14%  Similarity=0.058  Sum_probs=35.7

Q ss_pred             CCCCCCCcEEEeeeEEeCHHH-HHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEI-LEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHC  223 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c  223 (324)
                      +..+++|++|+|.+..++..+ ...-..++++|++|++.++.-......-..+++|++|+++++
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence            457888888888877655211 011134578888888887742221111223466666666543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.23  E-value=1.5e-06  Score=76.23  Aligned_cols=142  Identities=13%  Similarity=0.101  Sum_probs=76.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEec-CCccEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC-PSLLSF  239 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~-p~L~~L  239 (324)
                      +..+++|++|+|.+..+++..  . +..+++|++|++.++. ++.+.   ..++|++|.++++. +..+.... ++|+.|
T Consensus        54 ~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L  125 (317)
T 3o53_A           54 LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNI  125 (317)
T ss_dssp             HTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEE
T ss_pred             hhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEE
Confidence            345566666666555432110  0 4455666666666552 11111   22566666666554 34443322 666666


Q ss_pred             EEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEe
Q 020558          240 KYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFML  314 (324)
Q Consensus       240 ~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~  314 (324)
                      .+.+....    ..+.++++|+.+++....  ........+...+++|+.|.++.+.+...   +. ..+++|++|.++.
T Consensus       126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSS  200 (317)
T ss_dssp             ECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCS
T ss_pred             ECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCC
Confidence            66655321    234556777777766421  11122233445678888888887764222   33 4578899988876


Q ss_pred             c
Q 020558          315 V  315 (324)
Q Consensus       315 ~  315 (324)
                      +
T Consensus       201 N  201 (317)
T 3o53_A          201 N  201 (317)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.21  E-value=1.6e-06  Score=76.05  Aligned_cols=138  Identities=14%  Similarity=0.090  Sum_probs=96.0

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceE---EE-ecCCc
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEEL---EI-SCPSL  236 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l---~i-~~p~L  236 (324)
                      +..+++|++|+|++..+++      +..++.|++|.+.++.-. .+.. ..+++|++|.++++. +..+   .+ ..++|
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~l~-~~~~-~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L  146 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNIS-RVSC-SRGQGKKNIYLANNK-ITMLRDLDEGCRSRV  146 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCS-EEEE-CCCSSCEEEECCSSC-CCSGGGBCTGGGSSE
T ss_pred             hhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCccC-CcCc-cccCCCCEEECCCCC-CCCccchhhhccCCC
Confidence            5679999999999988764      335699999999998533 3222 345899999999876 3322   22 34899


Q ss_pred             cEEEEcceeeE-E----eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCccee
Q 020558          237 LSFKYFGPEIK-L----HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRH  309 (324)
Q Consensus       237 ~~L~~~~~~~~-~----~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~  309 (324)
                      +.|.+.+.... +    ...++++|+.+++.........     -...+++|+.|+++.+.+   ...+.  ..+++|++
T Consensus       147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~l~~L~~L~Ls~N~l---~~l~~~~~~l~~L~~  218 (317)
T 3o53_A          147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-----GQVVFAKLKTLDLSSNKL---AFMGPEFQSAAGVTW  218 (317)
T ss_dssp             EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-----CCCCCTTCCEEECCSSCC---CEECGGGGGGTTCSE
T ss_pred             CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-----cccccccCCEEECCCCcC---CcchhhhcccCcccE
Confidence            99999877432 1    1246799999999862211111     122589999999998865   23333  67789999


Q ss_pred             EEEEec
Q 020558          310 LMFMLV  315 (324)
Q Consensus       310 L~l~~~  315 (324)
                      |.++.+
T Consensus       219 L~L~~N  224 (317)
T 3o53_A          219 ISLRNN  224 (317)
T ss_dssp             EECTTS
T ss_pred             EECcCC
Confidence            999765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.18  E-value=1.1e-06  Score=76.79  Aligned_cols=142  Identities=11%  Similarity=0.133  Sum_probs=81.0

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLS  238 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~  238 (324)
                      +..+++|++|+|.+..+++-  . -+..+++|++|++.+|.-.. +.--..+++|++|.++++. +..+. + ..++|+.
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  155 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQITD-VTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQY  155 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCE
T ss_pred             HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCCCCC-chhhcCCCCCCEEECCCCc-cCcCccccCCCCccE
Confidence            34677777777777765541  1 15567777777777764211 1112345677777777664 22221 1 2367777


Q ss_pred             EEEcceeeE-E-eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          239 FKYFGPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       239 L~~~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      |.+.+.... + .+.++++|+.+++..........     +..+++|+.|.++.+..   ...+. ..+++|++|.++.+
T Consensus       156 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~L~~N~l---~~~~~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQI---SDVSPLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTSCC---CBCGGGTTCTTCCEEEEEEE
T ss_pred             EEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-----hcCCCCCCEEEccCCcc---CccccccCCCCCCEEEccCC
Confidence            777665331 1 25667777777776522111111     45677777777776654   22223 56777777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.18  E-value=3.6e-07  Score=78.84  Aligned_cols=149  Identities=16%  Similarity=0.113  Sum_probs=73.3

Q ss_pred             CCCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE---E-ec
Q 020558          160 GLSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE---I-SC  233 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~---i-~~  233 (324)
                      .+..+++|++|+|.+.. ++.-. ...+..+++|++|++.++.-.... ..-..+++|++|+++++. +..+.   + ..
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  152 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDL  152 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             hcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccC
Confidence            34555666666665553 32110 111344566666666655321110 001234566666666554 23222   1 23


Q ss_pred             CCccEEEEcceeeE-E---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCc
Q 020558          234 PSLLSFKYFGPEIK-L---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPE  306 (324)
Q Consensus       234 p~L~~L~~~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~  306 (324)
                      ++|+.|.+.+.... +   .+.++++|+.+++......   ......+..+++|+.|+++.+.+   ...+.   ..+++
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~  226 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA---HVHPHAFRDLGRLMTLYLFANNL---SALPTEALAPLRA  226 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCC---SCCCHHHHTTCTT
T ss_pred             CCccEEECCCCcccccCHHHhcCccccCEEECCCCccc---ccCHhHccCcccccEeeCCCCcC---CcCCHHHcccCcc
Confidence            56666666655321 1   2455666776666542111   11112345667777777776643   22332   56777


Q ss_pred             ceeEEEEecc
Q 020558          307 LRHLMFMLVH  316 (324)
Q Consensus       307 L~~L~l~~~~  316 (324)
                      |++|.++..+
T Consensus       227 L~~L~l~~N~  236 (285)
T 1ozn_A          227 LQYLRLNDNP  236 (285)
T ss_dssp             CCEEECCSSC
T ss_pred             cCEEeccCCC
Confidence            8877776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.18  E-value=5.3e-07  Score=78.19  Aligned_cols=140  Identities=17%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFK  240 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~  240 (324)
                      .+++|++|+|.+..+++-  .. +..+++|++|.+.++.-. .+.--..+++|++|+++++. +..+. + ..++|+.|.
T Consensus        66 ~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~  140 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLY  140 (291)
T ss_dssp             GCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEE
T ss_pred             cCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCC-CChhhccCCCCCEEECCCCc-CCCChhhcCCCCCCEEE
Confidence            455666666655554431  11 445566666666555311 11111233555555555543 22221 0 225555555


Q ss_pred             EcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          241 YFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       241 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      +.+....  -.+.++++|+.+++.........    . +..+++|+.|.++.+.+   ...+. ..+++|+.|.++.+
T Consensus       141 l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~----~-l~~l~~L~~L~L~~N~i---~~l~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCC---CBCGGGTTCTTCSEEEEEEE
T ss_pred             ccCCcCCcchhhccCCCCCEEEccCCccccch----h-hcCCCccCEEECCCCcC---CCChhhccCCCCCEEECcCC
Confidence            5544221  12445555666555541111000    0 34556666666655543   22223 45556666655543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.18  E-value=3.9e-07  Score=87.12  Aligned_cols=142  Identities=17%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--EecCCccE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--ISCPSLLS  238 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~  238 (324)
                      +..+++|+.|+|.++.+.+-  .. +..+++|+.|.|.+|.- ..+..-..+++|++|+++++. +..+.  ...|+|+.
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~  135 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES  135 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred             HccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence            34567777777777665431  11 56677777777777632 111112344677777776665 33221  12367777


Q ss_pred             EEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          239 FKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      |.+.+....  -.+..+++|+.+++.........    . +..+++|+.|.|+.+.+   ...+. ..+++|++|.|+.+
T Consensus       136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N~i---~~l~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          136 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             EECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCC---CBCGGGTTCTTCSEEECCSE
T ss_pred             EECCCCccCCchhhcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCCCC---CCChHHccCCCCCEEEccCC
Confidence            776655332  13556677777777642111110    1 45667777777776643   22233 56667777776554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.16  E-value=3.6e-07  Score=79.88  Aligned_cols=143  Identities=15%  Similarity=0.214  Sum_probs=101.8

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLS  238 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~  238 (324)
                      +..+++|++|+|.++.+++-  .. +..+++|++|++.++. ++.+..-..+++|++|+++++. +..+. + ..++|+.
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence            45789999999999887642  22 7889999999999985 2222223456899999999886 44332 2 3489999


Q ss_pred             EEEcceeeE-E-eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          239 FKYFGPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       239 L~~~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      |.+.+.... + .+.++++|+.+++.........    . +..+++|+.|.++.+.+   ...+. ..+++|++|.++.+
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~l---~~~~~l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT----P-LANLSKLTTLKADDNKI---SDISPLASLPNLIEVHLKNN  205 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCC---CCCGGGGGCTTCCEEECTTS
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCCh----h-hcCCCCCCEEECCCCcc---CcChhhcCCCCCCEEEccCC
Confidence            999877432 1 2678899999999863211111    1 57899999999998764   33333 77889999999766


Q ss_pred             c
Q 020558          316 H  316 (324)
Q Consensus       316 ~  316 (324)
                      .
T Consensus       206 ~  206 (308)
T 1h6u_A          206 Q  206 (308)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.14  E-value=3.8e-06  Score=77.85  Aligned_cols=104  Identities=20%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE---ecC
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI---SCP  234 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i---~~p  234 (324)
                      ..+..+++|++|+|.++.++.-. ...+..+++|+.|++.++.-.... ..-..+++|++|++++|..+..+..   ..+
T Consensus       146 ~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             TSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             hhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            35667888888888887765321 233667888888888886432110 0112346778888777664444321   113


Q ss_pred             CccEEEEcceeeE----EeeCCCCCceEEEEec
Q 020558          235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~  263 (324)
                      +|++|.+.+....    ..+.++++|+.+++..
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence            5666666554321    1244555666655554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.13  E-value=8e-08  Score=85.94  Aligned_cols=158  Identities=15%  Similarity=0.165  Sum_probs=99.1

Q ss_pred             CCCCCCCcEEEeeeEEeC--------HHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCc----ce
Q 020558          161 LSRVKSLRFLYFDTVNVT--------EEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNL----EE  228 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l----~~  228 (324)
                      ...|++|+.|.+..+...        ..++..++..+|+||+|.|.++.+.....+.  .++|++|.+..|.--    ..
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSBCCHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCCCChHHHHH
Confidence            346899999998765321        1247788999999999999988544322222  489999999876521    11


Q ss_pred             EEE-ecCCccEEEEcce------e--e----E-EeeCCCCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeec
Q 020558          229 LEI-SCPSLLSFKYFGP------E--I----K-LHVKNVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       229 l~i-~~p~L~~L~~~~~------~--~----~-~~~~~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      +.. ..|+|++|.++..      .  .    + +....+|+|+.+.+.... .+.....+.+. ..+++|+.|.|+.+.+
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCC
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCC
Confidence            221 4699999997421      0  1    1 122358999999997522 11111111111 2578999999987765


Q ss_pred             cee--cccCC--CCCCcceeEEEEecchhhhcc
Q 020558          294 EEI--LQFPE--CDLPELRHLMFMLVHLIVAAS  322 (324)
Q Consensus       294 ~~~--~~~~~--~~~~~L~~L~l~~~~~i~~~~  322 (324)
                      ...  ..++.  ..+++|++|.|+.+ .|++++
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~  323 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYN-YLSDEM  323 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHH
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCC-cCCHHH
Confidence            211  11222  56789999999876 466543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.12  E-value=8.9e-07  Score=75.90  Aligned_cols=146  Identities=16%  Similarity=0.159  Sum_probs=95.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecCC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCPS  235 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~  235 (324)
                      +..+++|++|+|.+..+++  +. -+..+++|++|++.+|.-.... ..-..+++|++|+++++. +..+.-    ..++
T Consensus        59 l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTN  134 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred             cccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCC
Confidence            4568899999998887664  22 2567889999999887422111 111345789999998876 444331    3478


Q ss_pred             ccEEEEcceeeE-E---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcce
Q 020558          236 LLSFKYFGPEIK-L---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELR  308 (324)
Q Consensus       236 L~~L~~~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~  308 (324)
                      |+.|.+.+.... +   .+.++++|+.+++......   ......+..+++|+.|.++.+.+   ...+.   ..+++|+
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ---SLPEGVFDKLTQLKDLRLYQNQL---KSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCC
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcC---ccCHHHhcCCccCCEEECCCCcC---CccCHHHHhCCcCCC
Confidence            888888776432 1   2567888999888762211   11123356788999999988764   22222   6778888


Q ss_pred             eEEEEecc
Q 020558          309 HLMFMLVH  316 (324)
Q Consensus       309 ~L~l~~~~  316 (324)
                      +|.++.++
T Consensus       209 ~L~l~~N~  216 (272)
T 3rfs_A          209 YIWLHDNP  216 (272)
T ss_dssp             EEECCSSC
T ss_pred             EEEccCCC
Confidence            88886653

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.11  E-value=1.4e-06  Score=74.85  Aligned_cols=36  Identities=25%  Similarity=0.641  Sum_probs=33.9

Q ss_pred             ccCCCCChHHHHHHHhcCChhHHH-Hhhhcccchhhc
Q 020558           15 DWVSRLPDDILVNIISRLTLKEAA-RTSVLSSRWKYL   50 (324)
Q Consensus        15 d~~s~LPd~vl~~Ils~L~~~d~~-r~s~vsk~W~~l   50 (324)
                      ..+..||+|++.+||++||.++++ ++++|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            467899999999999999999999 999999999975

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.10  E-value=1.1e-06  Score=81.97  Aligned_cols=95  Identities=14%  Similarity=0.117  Sum_probs=48.1

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEe-cCCccEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS-CPSLLSF  239 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~-~p~L~~L  239 (324)
                      +..+++|++|+|+++.+++..  . +..+++|++|++.++. ++.+.   ..++|++|+++++. +..+... .|+|+.|
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L  125 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNI  125 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEE
T ss_pred             HhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEE
Confidence            345667777776665543210  0 4556677777776662 22211   22566666666654 3333322 2566666


Q ss_pred             EEcceee----EEeeCCCCCceEEEEec
Q 020558          240 KYFGPEI----KLHVKNVPQLVDVLIGG  263 (324)
Q Consensus       240 ~~~~~~~----~~~~~~~~~L~~l~l~~  263 (324)
                      .+.+...    +..++++++|+.+++..
T Consensus       126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  153 (487)
T 3oja_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKL  153 (487)
T ss_dssp             ECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred             ECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence            6555432    12344555666555553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.10  E-value=1.6e-06  Score=80.81  Aligned_cols=98  Identities=13%  Similarity=0.158  Sum_probs=73.3

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEE
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKY  241 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~  241 (324)
                      ..+++|++|+|.+..+++-. ...+..+++|++|+|.+|.-..... -..+++|++|+++++. +..+.. .|+|+.|.+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L  106 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA  106 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred             ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence            35679999999998876421 1225789999999999986433333 3466899999999885 666554 399999999


Q ss_pred             cceee-EEeeCCCCCceEEEEec
Q 020558          242 FGPEI-KLHVKNVPQLVDVLIGG  263 (324)
Q Consensus       242 ~~~~~-~~~~~~~~~L~~l~l~~  263 (324)
                      .+... .+....+++|+.+++..
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~  129 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLAN  129 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCS
T ss_pred             cCCcCCCCCccccCCCCEEECCC
Confidence            88754 24455689999999986

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.09  E-value=5.4e-07  Score=76.60  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=32.2

Q ss_pred             cCCCCChHHHHHHHhcCChhHHHHhhhcccchhh
Q 020558           16 WVSRLPDDILVNIISRLTLKEAARTSVLSSRWKY   49 (324)
Q Consensus        16 ~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~   49 (324)
                      .|+.||+||+.+||+||+.+|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999996

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.09  E-value=1e-06  Score=81.28  Aligned_cols=148  Identities=17%  Similarity=0.230  Sum_probs=89.6

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEE-E-ecCCc
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELE-I-SCPSL  236 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L  236 (324)
                      +..+++|++|+|.+..++.- -...+..+++|++|++.+|..++.+..  -..+++|++|+++++. +..+. + ..++|
T Consensus       143 ~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L  220 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGL  220 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTC
T ss_pred             hcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccc
Confidence            55677777777777665421 011245677777777777766555422  1245677777777665 33321 1 23678


Q ss_pred             cEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCccee
Q 020558          237 LSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRH  309 (324)
Q Consensus       237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~  309 (324)
                      +.|.+.+....    -.+.++++|+.+++......   ......+..+++|+.|+|+.+.+   ...+.   ..+++|++
T Consensus       221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS---LIERNAFDGLASLVELNLAHNNL---SSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCC---SCCCTTSSTTCTTCCE
T ss_pred             cEEECcCCcCcccCcccccCccCCCEEEeCCCcCc---eECHHHhcCCCCCCEEECCCCcC---CccChHHhccccCCCE
Confidence            88887766432    24667788888887652211   11112356788999999987754   23333   56788999


Q ss_pred             EEEEecc
Q 020558          310 LMFMLVH  316 (324)
Q Consensus       310 L~l~~~~  316 (324)
                      |+|+..+
T Consensus       295 L~L~~Np  301 (452)
T 3zyi_A          295 LHLHHNP  301 (452)
T ss_dssp             EECCSSC
T ss_pred             EEccCCC
Confidence            9886654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.08  E-value=3.7e-06  Score=77.94  Aligned_cols=36  Identities=17%  Similarity=0.015  Sum_probs=17.7

Q ss_pred             ccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558          278 NYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       278 ~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      ..+++|+.|+++.+..  ....+.  ....+|++|.++.+
T Consensus       197 ~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          197 KRLYRLKVLEISHWPY--LDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             CSCTTCCEEEEECCTT--CCEECTTTTTTCCCSEEEEESS
T ss_pred             ccCcccceeeCCCCcc--ccccCcccccCccccEEECcCC
Confidence            4556666666655432  222222  23336666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.07  E-value=1.6e-06  Score=79.83  Aligned_cols=152  Identities=15%  Similarity=0.024  Sum_probs=99.8

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----e
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----S  232 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~  232 (324)
                      ..+.++++|++|+|.+..++.- -...+.++++|++|++.++.-. .+.  .-..+++|++|++.+|..+..+..    .
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~  194 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG  194 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred             hhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence            3466789999999988776521 1122456889999999987532 211  113458899999998877776653    3


Q ss_pred             cCCccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeE
Q 020558          233 CPSLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHL  310 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  310 (324)
                      .++|+.|.+.+....  -.+..+++|+.+++......   ......+..+++|+.|.++.+.+..+.......+++|++|
T Consensus       195 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP---EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             CTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS---EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcccccccccccccccEEECcCCcCc---ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            478999988776432  14667888998888762211   1112335688899999998776522211111678899999


Q ss_pred             EEEec
Q 020558          311 MFMLV  315 (324)
Q Consensus       311 ~l~~~  315 (324)
                      +|+.+
T Consensus       272 ~L~~N  276 (452)
T 3zyi_A          272 NLAHN  276 (452)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            98765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.06  E-value=1.6e-06  Score=85.43  Aligned_cols=105  Identities=16%  Similarity=0.184  Sum_probs=55.7

Q ss_pred             CCCCCCCCCCcEEEeeeEEeCHHHHH-HHHHcCCccceeEeecCCCcc--eEEEecccCCccEEEEecCCCcceEE----
Q 020558          158 PCGLSRVKSLRFLYFDTVNVTEEILE-FFINNCPNLDDLRVGRSDNLL--RLKVVGSLLQLKCLHIDHCNNLEELE----  230 (324)
Q Consensus       158 ~~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~l~~c~~~~--~l~i~~~~~~L~~L~i~~c~~l~~l~----  230 (324)
                      |..+..+++|++|+|+++.+.+..-. .-+..|++|++|++.+|.-..  ...+...+++|++|+++++. +....    
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~  171 (768)
T 3rgz_A           93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGW  171 (768)
T ss_dssp             CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHH
T ss_pred             chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhh
Confidence            34566788888888888776532111 025678888888888773211  11111344677777776654 22211    


Q ss_pred             ---EecCCccEEEEcceeeE--EeeCCCCCceEEEEec
Q 020558          231 ---ISCPSLLSFKYFGPEIK--LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       231 ---i~~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~  263 (324)
                         -..++|+.|.+.+....  ....++++|+.+++..
T Consensus       172 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~  209 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS  209 (768)
T ss_dssp             HHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCS
T ss_pred             hhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcC
Confidence               12355555555544321  1224455555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.06  E-value=2e-06  Score=82.11  Aligned_cols=106  Identities=22%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             cCCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEE---
Q 020558          156 KSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELE---  230 (324)
Q Consensus       156 ~l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~---  230 (324)
                      .+|..+..+++|++|++.++.+++-. ...+..+++|++|++.++.....+.  .-..+++|++|+++++. +..+.   
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  369 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN  369 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred             CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence            34556667778888888777665321 1224567777777777764322111  11234667777666654 33332   


Q ss_pred             ---EecCCccEEEEcceeeE----EeeCCCCCceEEEEec
Q 020558          231 ---ISCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       231 ---i~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~  263 (324)
                         -..++|+.|.+.+....    ..+.++++|+.+++..
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence               12356666666554321    1244555666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.04  E-value=3.9e-06  Score=73.27  Aligned_cols=109  Identities=13%  Similarity=0.037  Sum_probs=53.1

Q ss_pred             ccEEEEEEeCCCCCcchHHHHHHHHHhcCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCC--CCCCCCcEEEee
Q 020558           96 VNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGL--SRVKSLRFLYFD  173 (324)
Q Consensus        96 l~~l~l~~~~~~~~~~~v~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--~~~~~L~~L~L~  173 (324)
                      ++++.+.-  .......+..........++++|++....-..    ..              |..+  ..+++|++|+|.
T Consensus        66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~--------------~~~~~~~~~~~L~~L~Ls  125 (310)
T 4glp_A           66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKITG----TM--------------PPLPLEATGLALSSLRLR  125 (310)
T ss_dssp             CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS----CC--------------CCCSSSCCCBCCSSCEEE
T ss_pred             eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEecc----ch--------------hhhhhhccCCCCCEEEee
Confidence            55555522  22233445556665555679999997654321    01              1111  345666666666


Q ss_pred             eEEeCHHH--HH-HHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCC
Q 020558          174 TVNVTEEI--LE-FFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       174 ~~~~~~~~--l~-~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~  224 (324)
                      ++.+++..  +. .-+..+++|++|++.++.-.... ..-..+++|++|+++++.
T Consensus       126 ~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          126 NVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             SCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred             cccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence            66655310  11 11225666666666665321110 011133556666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.03  E-value=6e-06  Score=78.80  Aligned_cols=149  Identities=12%  Similarity=0.039  Sum_probs=75.7

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE------Eec
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE------ISC  233 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~------i~~  233 (324)
                      .+..+++|++|++.++.++  .+..+  .+++|++|++.++.......+ ..+++|++|+++++. +..+.      ...
T Consensus       302 ~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~  375 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNA-LSFSGCCSYSDLGT  375 (606)
T ss_dssp             CCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSC-EEEEEECCHHHHCC
T ss_pred             hccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCc-cCCCcchhhhhccC
Confidence            3456677777777777652  22232  677777777777754443322 234666666666554 22221      123


Q ss_pred             CCccEEEEcceeeE---EeeCCCCCceEEEEecc-cCCc---------------------ccceeccccccCCCceEEEE
Q 020558          234 PSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGG-HGIG---------------------KGKVIGPIVNYFPQLKTLEL  288 (324)
Q Consensus       234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~-~~~~---------------------~~~~~~~l~~~~~~L~~L~l  288 (324)
                      ++|+.|.+.+....   -.+.++++|+.+++... ....                     ........+..+++|+.|.+
T Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  455 (606)
T 3vq2_A          376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM  455 (606)
T ss_dssp             SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence            55555555544321   13444555555555431 0000                     00011122456677777777


Q ss_pred             EeeecceecccCC--CCCCcceeEEEEec
Q 020558          289 HVELNEEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       289 ~~~~~~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      +.+.. .....|.  ..+++|++|.++.+
T Consensus       456 ~~n~l-~~~~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          456 AGNSF-KDNTLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             TTCEE-GGGEECSCCTTCTTCCEEECTTS
T ss_pred             CCCcC-CCcchHHhhccCCCCCEEECCCC
Confidence            66653 2112343  56677777777655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.02  E-value=1.3e-06  Score=74.82  Aligned_cols=149  Identities=20%  Similarity=0.189  Sum_probs=92.6

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecC
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCP  234 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p  234 (324)
                      .+..+++|++|+|.+..++.- -..++..+++|++|++.++.-.... ..-..+++|++|.++++. +..+..    ..+
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  133 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT  133 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence            356788888888887765421 1122456888888888877422110 111345788888888765 333321    347


Q ss_pred             CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcc
Q 020558          235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPEL  307 (324)
Q Consensus       235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L  307 (324)
                      +|+.|.+.+....    ..+.++++|+.+++........   ....+..+++|+.|+++.+.+   ...+.   ..+++|
T Consensus       134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV---PEGAFDKLTELKTLKLDNNQL---KRVPEGAFDSLEKL  207 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC---CTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTC
T ss_pred             CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe---ChhHhccCCCcCEEECCCCcC---CcCCHHHhccccCC
Confidence            8888888776432    1256788899988875221111   112345788999999987754   23333   567888


Q ss_pred             eeEEEEecc
Q 020558          308 RHLMFMLVH  316 (324)
Q Consensus       308 ~~L~l~~~~  316 (324)
                      ++|.|+..+
T Consensus       208 ~~L~l~~N~  216 (270)
T 2o6q_A          208 KMLQLQENP  216 (270)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEecCCC
Confidence            888886543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.01  E-value=2.4e-06  Score=78.39  Aligned_cols=149  Identities=15%  Similarity=0.217  Sum_probs=96.6

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEE-E-ecCC
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELE-I-SCPS  235 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~-i-~~p~  235 (324)
                      .+..+++|++|+|.+..++.- -...+..+++|++|++.+|.....+.-  -..+++|++|+++++. +..+. + ..++
T Consensus       131 ~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~  208 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIK  208 (440)
T ss_dssp             TSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSS
T ss_pred             HhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcc
Confidence            356788888888888765421 011245788889998888776655432  1345788888888775 34332 1 2368


Q ss_pred             ccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcce
Q 020558          236 LLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELR  308 (324)
Q Consensus       236 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~  308 (324)
                      |+.|.+.+....    ..+.++++|+.+++......   ......+..+++|+.|+|+.+.+   ...+.   ..+++|+
T Consensus       209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ---VIERNAFDNLQSLVEINLAHNNL---TLLPHDLFTPLHHLE  282 (440)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTSSTTCTTCCEEECTTSCC---CCCCTTTTSSCTTCC
T ss_pred             cCEEECCCCccCccChhhhccCccCCEEECCCCcee---EEChhhhcCCCCCCEEECCCCCC---CccChhHhccccCCC
Confidence            888888776432    24677888888888752211   11123356789999999988764   23333   5678899


Q ss_pred             eEEEEecc
Q 020558          309 HLMFMLVH  316 (324)
Q Consensus       309 ~L~l~~~~  316 (324)
                      +|+|+..+
T Consensus       283 ~L~L~~Np  290 (440)
T 3zyj_A          283 RIHLHHNP  290 (440)
T ss_dssp             EEECCSSC
T ss_pred             EEEcCCCC
Confidence            99886554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.00  E-value=6.2e-06  Score=72.56  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=41.6

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcc--e-EEEecccCCccEEEEecCCCcceEEEe-cCCccEEE
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLL--R-LKVVGSLLQLKCLHIDHCNNLEELEIS-CPSLLSFK  240 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~-l~i~~~~~~L~~L~i~~c~~l~~l~i~-~p~L~~L~  240 (324)
                      ++|++|++.+..++.- ....+.++++|++|++.++.-..  . ...-..+++|++|+++++. +..+... .++|+.|.
T Consensus       121 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~  198 (330)
T 1xku_A          121 KTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELH  198 (330)
T ss_dssp             TTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEE
T ss_pred             ccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEE
Confidence            5566666665554321 11224456666666666553211  0 0001223555555555443 2221111 14555555


Q ss_pred             EcceeeE----EeeCCCCCceEEEEec
Q 020558          241 YFGPEIK----LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       241 ~~~~~~~----~~~~~~~~L~~l~l~~  263 (324)
                      +.+....    ..+.++++|+.+++..
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            5443221    1244455555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.00  E-value=1.4e-06  Score=83.14  Aligned_cols=153  Identities=18%  Similarity=0.115  Sum_probs=70.4

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE---EecccCCccEEEEecCCCcceEEE----e
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK---VVGSLLQLKCLHIDHCNNLEELEI----S  232 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~i~~c~~l~~l~i----~  232 (324)
                      .+..+++|++|++.++.+....-...+..+++|++|++.++.-.....   .-..+++|++|+++++. +..+..    .
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  398 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKE  398 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTT
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcC
Confidence            455667777777766643311111113456667777666654222110   01234556666665543 222210    1


Q ss_pred             cCCccEEEEcceeeE-----------------------------EeeCCCCCceEEEEecccCCcccceeccccccCCCc
Q 020558          233 CPSLLSFKYFGPEIK-----------------------------LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQL  283 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~-----------------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L  283 (324)
                      .++|+.|.+.+....                             ..+.++++|+.+++...............+..+++|
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            244555554443221                             123344444444444311000000011234567777


Q ss_pred             eEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558          284 KTLELHVELNEEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       284 ~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      +.|+++.+...  ...|.  ..+++|++|.|+.+
T Consensus       479 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          479 EILVLSFCDLS--SIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             CEEECTTSCCC--EECTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCccC--ccChhhhccccCCCEEECCCC
Confidence            77777766541  12222  66778888888665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.00  E-value=1.3e-06  Score=77.42  Aligned_cols=144  Identities=17%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--EecCCccE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--ISCPSLLS  238 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~  238 (324)
                      +..+++|++|++.++.+++  +.. +..+++|++|++.+|.-... ..-..+++|++|++++|.....+.  -..++|+.
T Consensus        84 ~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITD--ISA-LQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEECTTSCCCCC-GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             hhcCCcCCEEEccCCcccC--chH-HcCCCcCCEEECcCCcccCc-hhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            5567777777777766543  222 55677777777777642211 112345777777777775433322  13367777


Q ss_pred             EEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          239 FKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      |.+.+....  ..+.++++|+.+++.........    . +..+++|+.|.+..+..   ...+. ..+++|++|.++.+
T Consensus       160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n~l---~~~~~~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS----P-LASLTSLHYFTAYVNQI---TDITPVANMTRLNSLKIGNN  231 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG----G-GGGCTTCCEEECCSSCC---CCCGGGGGCTTCCEEECCSS
T ss_pred             EEecCCCcCCchhhccCCCCCEEEccCCcccccc----c-ccCCCccceeecccCCC---CCCchhhcCCcCCEEEccCC
Confidence            777765432  12567778888777652211111    1 46788888888877653   22222 67789999998766


Q ss_pred             c
Q 020558          316 H  316 (324)
Q Consensus       316 ~  316 (324)
                      .
T Consensus       232 ~  232 (347)
T 4fmz_A          232 K  232 (347)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.99  E-value=4.8e-06  Score=78.49  Aligned_cols=146  Identities=12%  Similarity=0.117  Sum_probs=74.1

Q ss_pred             CCCCCCcEEEeeeEEeCHHH-HHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEec-CCccEE
Q 020558          162 SRVKSLRFLYFDTVNVTEEI-LEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISC-PSLLSF  239 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~-p~L~~L  239 (324)
                      ..+++|++|+|+++.+++-. ....+..+++|++|++.+|.-...-..-..+++|++|+++++. +..+.-.. ++|+.|
T Consensus       358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L  436 (549)
T 2z81_A          358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVL  436 (549)
T ss_dssp             TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEE
T ss_pred             hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEE
Confidence            34455555555555443211 1233445555555555555211100001123456666665554 32222111 466666


Q ss_pred             EEcceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEecc
Q 020558          240 KYFGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLVH  316 (324)
Q Consensus       240 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~  316 (324)
                      .+.+....-...++++|+++++....-....    . ...+++|+.|+++.+..   ...+.   ..+++|++|+++.++
T Consensus       437 ~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip----~-~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          437 DVSNNNLDSFSLFLPRLQELYISRNKLKTLP----D-ASLFPVLLVMKISRNQL---KSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCC----C-GGGCTTCCEEECCSSCC---CCCCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCChhhhcccCChhcEEECCCCccCcCC----C-cccCccCCEEecCCCcc---CCcCHHHHhcCcccCEEEecCCC
Confidence            6666543222356788888887752211111    1 23578888888887754   22222   577888888886554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.97  E-value=3.8e-07  Score=72.15  Aligned_cols=134  Identities=17%  Similarity=0.149  Sum_probs=72.3

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF  242 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~  242 (324)
                      ..++|++|+|.++.++++.+...+..+++|++|++.+|. ++.+..-..+++|++|+++++. +...             
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~-------------   86 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGG-------------   86 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSC-------------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchH-------------
Confidence            357899999998887754455556778899999999885 2222222345677888877765 2220             


Q ss_pred             ceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc--CC-CCCCcceeEEEEecc
Q 020558          243 GPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF--PE-CDLPELRHLMFMLVH  316 (324)
Q Consensus       243 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~-~~~~~L~~L~l~~~~  316 (324)
                         .+..+.++++|+.+++.........  ....+..+++|+.|.++.+........  .. ..+++|++|.+..+.
T Consensus        87 ---~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           87 ---LDMLAEKLPNLTHLNLSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ---CCHHHHHCTTCCEEECBSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ---HHHHHhhCCCCCEEeccCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence               0111223555555555531111000  002234566666666666543111110  01 456666666666553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.96  E-value=1.5e-06  Score=79.76  Aligned_cols=150  Identities=11%  Similarity=0.046  Sum_probs=86.4

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCP  234 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p  234 (324)
                      +.++++|++|+|.+..++.- -...+..+++|++|++.++.-. .+.  .-..+++|++|++.++..+..+.-    ..+
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             ccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            44567777777776655421 0112445677777777766421 110  112346777777777665555432    246


Q ss_pred             CccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEE
Q 020558          235 SLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMF  312 (324)
Q Consensus       235 ~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  312 (324)
                      +|+.|.+.+....  -.+.++++|+.+++......   ......+..+++|+.|.++.+.+..+.......+++|++|+|
T Consensus       186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS---AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred             ccCeecCCCCcCccccccCCCcccCEEECCCCccC---ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence            7777777766432  13566777887777652111   111233567889999998877652221111167789999988


Q ss_pred             Eec
Q 020558          313 MLV  315 (324)
Q Consensus       313 ~~~  315 (324)
                      +.+
T Consensus       263 ~~N  265 (440)
T 3zyj_A          263 AHN  265 (440)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.95  E-value=3.3e-06  Score=72.69  Aligned_cols=150  Identities=19%  Similarity=0.262  Sum_probs=98.9

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE--EEecccCCccEEEEecCCCcceEE---E-e
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL--KVVGSLLQLKCLHIDHCNNLEELE---I-S  232 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~i~~c~~l~~l~---i-~  232 (324)
                      ..+..+++|++|+|.+..+++-. ...+.++++|++|++.++..++.+  ..-..+++|++|+++++. +..+.   + .
T Consensus        50 ~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  127 (285)
T 1ozn_A           50 ASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG  127 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred             HHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhC
Confidence            34677899999999887654311 112567899999999988644332  112345789999998876 33332   1 3


Q ss_pred             cCCccEEEEcceeeE-E---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCc
Q 020558          233 CPSLLSFKYFGPEIK-L---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPE  306 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~  306 (324)
                      .++|+.|.+.+.... +   .+.++++|+.+++......   ......+..+++|+.|.++.+...  ...+.  ..+++
T Consensus       128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~  202 (285)
T 1ozn_A          128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGR  202 (285)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTT
T ss_pred             CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---ccCHHHhcCccccCEEECCCCccc--ccCHhHccCccc
Confidence            478999988876432 1   2667889999988752211   111223567899999999988652  22233  67889


Q ss_pred             ceeEEEEec
Q 020558          307 LRHLMFMLV  315 (324)
Q Consensus       307 L~~L~l~~~  315 (324)
                      |++|+++.+
T Consensus       203 L~~L~l~~n  211 (285)
T 1ozn_A          203 LMTLYLFAN  211 (285)
T ss_dssp             CCEEECCSS
T ss_pred             ccEeeCCCC
Confidence            999999765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.92  E-value=1.8e-06  Score=76.79  Aligned_cols=153  Identities=12%  Similarity=0.101  Sum_probs=87.0

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE--EEecccCCccEEEEecCCCcceEEE----e
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL--KVVGSLLQLKCLHIDHCNNLEELEI----S  232 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~i~~c~~l~~l~i----~  232 (324)
                      ..+..+++|++|+|.+..++.- -...+.++++|++|++.++.-...-  ..-..+++|++|++.++..+..+.-    .
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            3466778888888887766531 1123567788888888876322111  1123457888888887754454421    2


Q ss_pred             cCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceec--ccCC-CCCC
Q 020558          233 CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEIL--QFPE-CDLP  305 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~-~~~~  305 (324)
                      .++|+.|.+.+....    -.+.++++|+.+++.........   ..+...+++|+.|+++.+......  ..+. ....
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~  249 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL---EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS  249 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH---HHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred             CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch---hhhhhhcccccEEECCCCccccccccccccccccc
Confidence            367777777665321    24566777888877752221111   122345788888888877652111  1111 3456


Q ss_pred             cceeEEEEec
Q 020558          306 ELRHLMFMLV  315 (324)
Q Consensus       306 ~L~~L~l~~~  315 (324)
                      .++.+.+...
T Consensus       250 ~l~~l~L~~~  259 (353)
T 2z80_A          250 LIKKFTFRNV  259 (353)
T ss_dssp             CCCEEEEESC
T ss_pred             hhhccccccc
Confidence            6777776554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.90  E-value=5.1e-06  Score=76.84  Aligned_cols=142  Identities=13%  Similarity=0.127  Sum_probs=78.5

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--EecCCccE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--ISCPSLLS  238 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~  238 (324)
                      +..+++|++|++.++.+.+-.  . +..+++|++|++.+|.-. .+.--..+++|++|++++|. +..+.  -..++|+.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCCCC-CChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            556667777777666654321  1 556677777777666321 11112344667777776654 22211  12366666


Q ss_pred             EEEcceeeE-EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          239 FKYFGPEIK-LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       239 L~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      |.+...... ..+.++++|+.+++........     ..+..+++|+.|.++.+..   ...+. ..+++|++|.++.+
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQI---SDITPLGILTNLDELSLNGN  231 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCC---CCCGGGGGCTTCCEEECCSS
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCcc---cccccccccCCCCEEECCCC
Confidence            666432221 1356677777777765221111     1256778888888877653   22222 56788888888765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.90  E-value=6.5e-07  Score=78.36  Aligned_cols=148  Identities=18%  Similarity=0.144  Sum_probs=97.6

Q ss_pred             CCCCCCcEEEeeeEEeCHH--HHHHHHH-cCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcce------EE-
Q 020558          162 SRVKSLRFLYFDTVNVTEE--ILEFFIN-NCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEE------LE-  230 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~------l~-  230 (324)
                      ..+++|++|+|.+..+++.  .+..+.. ..++|++|++.++.-.... ..-..+++|++|+++++.-.+.      +. 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            6799999999999987653  3433221 2489999999998532211 1112458999999998863222      11 


Q ss_pred             EecCCccEEEEcceeeE-------EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCCC
Q 020558          231 ISCPSLLSFKYFGPEIK-------LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPEC  302 (324)
Q Consensus       231 i~~p~L~~L~~~~~~~~-------~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~  302 (324)
                      -..++|+.|.+.+....       ..+.++++|+.+++... .....   .......+++|+.|.++.+.+   ..+|..
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~Ls~N~l---~~ip~~  271 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---GAPSCDWPSQLNSLNLSFTGL---KQVPKG  271 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---CCSCCCCCTTCCEEECTTSCC---SSCCSS
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---chhhhhhcCCCCEEECCCCcc---Chhhhh
Confidence            24589999999877542       12346789999999862 21111   112234679999999998865   355553


Q ss_pred             CCCcceeEEEEec
Q 020558          303 DLPELRHLMFMLV  315 (324)
Q Consensus       303 ~~~~L~~L~l~~~  315 (324)
                      .+++|++|+++..
T Consensus       272 ~~~~L~~L~Ls~N  284 (312)
T 1wwl_A          272 LPAKLSVLDLSYN  284 (312)
T ss_dssp             CCSEEEEEECCSS
T ss_pred             ccCCceEEECCCC
Confidence            3389999999765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.90  E-value=2.7e-05  Score=70.12  Aligned_cols=144  Identities=14%  Similarity=0.110  Sum_probs=74.6

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCC-------------------ccEEEEec
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQ-------------------LKCLHIDH  222 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~-------------------L~~L~i~~  222 (324)
                      ..+++|++|++.+..++.-. ...+..+++|++|++.++.-. .+. ....++                   |++|++++
T Consensus       138 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~  214 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASH  214 (390)
T ss_dssp             TTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCS-BCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred             cCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCC-ccc-cccccccceeecccccccccCCCCcceEEECCC
Confidence            45666666666665543210 111345666666666665311 111 112234                   44444444


Q ss_pred             CCCcceEEEec-CCccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc
Q 020558          223 CNNLEELEISC-PSLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF  299 (324)
Q Consensus       223 c~~l~~l~i~~-p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  299 (324)
                      +. +..+.... ++|+.|.+.+....  -.+.++++|+++++......   ......+..+++|+.|.++.+...   ..
T Consensus       215 n~-l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~---~~  287 (390)
T 3o6n_A          215 NS-INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE---KIMYHPFVKMQRLERLYISNNRLV---AL  287 (390)
T ss_dssp             SC-CCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC---EEESGGGTTCSSCCEEECCSSCCC---EE
T ss_pred             Ce-eeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC---CcChhHccccccCCEEECCCCcCc---cc
Confidence            33 23322211 45666666554321  13556677777777652111   112233557788888888877542   22


Q ss_pred             CC--CCCCcceeEEEEec
Q 020558          300 PE--CDLPELRHLMFMLV  315 (324)
Q Consensus       300 ~~--~~~~~L~~L~l~~~  315 (324)
                      +.  ..+++|++|.++.+
T Consensus       288 ~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             ECSSSCCTTCCEEECCSS
T ss_pred             CcccCCCCCCCEEECCCC
Confidence            33  57888999988766

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.89  E-value=5.6e-06  Score=69.30  Aligned_cols=62  Identities=16%  Similarity=0.192  Sum_probs=28.1

Q ss_pred             CCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecC
Q 020558          161 LSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHC  223 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c  223 (324)
                      +..+++|++|+|.+.. ++.-. ...+.++++|++|++.+|..++.+.-  -..+++|++|++.++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n  115 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT  115 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred             ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence            3455666666666553 32100 00124556666666665444433211  113355555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.89  E-value=1.8e-05  Score=70.25  Aligned_cols=154  Identities=16%  Similarity=0.075  Sum_probs=65.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCP  234 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p  234 (324)
                      +..+++|++|+|.+..++.-.-...+..+++|++|++.++...+.+.  .-..+++|++|+++++. +..+..    ..+
T Consensus       120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~  198 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQ  198 (353)
T ss_dssp             HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCS
T ss_pred             hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccc
Confidence            34566666666665554320000123456666666666654333221  11233566666666554 222211    124


Q ss_pred             CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecc--eecccCC--CCCCc
Q 020558          235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNE--EILQFPE--CDLPE  306 (324)
Q Consensus       235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~--~~~~~  306 (324)
                      +|+.|.+.+....    ..+..+++|+.+++...................+.++.+.++.....  .....|.  ..+++
T Consensus       199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~  278 (353)
T 2z80_A          199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG  278 (353)
T ss_dssp             EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred             cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence            5555555544321    11223566666666541111000000011223455555655544431  1111222  45566


Q ss_pred             ceeEEEEec
Q 020558          307 LRHLMFMLV  315 (324)
Q Consensus       307 L~~L~l~~~  315 (324)
                      |++|+++.+
T Consensus       279 L~~L~Ls~N  287 (353)
T 2z80_A          279 LLELEFSRN  287 (353)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            666666544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.89  E-value=1.3e-05  Score=75.60  Aligned_cols=131  Identities=12%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcc--eEEEecccCCccEEEEecCCCcceEEE----e
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLL--RLKVVGSLLQLKCLHIDHCNNLEELEI----S  232 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~l~i~~~~~~L~~L~i~~c~~l~~l~i----~  232 (324)
                      ..+..+++|++|+|++..+++- ....+.++++|++|++.++.-..  ....-..+++|++|++.++..+..+..    .
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            3467789999999998876542 12235778999999999874321  111223557899999988764454431    2


Q ss_pred             cCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          233 CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      .++|+.|.+.+....    -.++++++|+.+++..........   .+...+++|+.|+++.+..
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE---IFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH---HHHHSTTTBSEEEEESCBC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcccccch---hhHhhcccccEEEccCCcc
Confidence            477888887765332    235667777777776522211111   1233567777777776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.88  E-value=4.6e-06  Score=82.10  Aligned_cols=101  Identities=15%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE---Ee-cCCc
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE---IS-CPSL  236 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~---i~-~p~L  236 (324)
                      +..+++|++|+|.++.+++. +..-+..+++|++|++.+|.-....... .+++|++|++.+|.-...+.   .. +++|
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L  296 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTL  296 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred             cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence            77899999999999887643 3334678999999999998643222111 45778888887664111111   11 2677


Q ss_pred             cEEEEcceeeE----EeeCCCCCceEEEEec
Q 020558          237 LSFKYFGPEIK----LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~  263 (324)
                      +.|.+.+....    -.++++++|+.+++..
T Consensus       297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             SEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             CEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence            77776665432    2355666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.88  E-value=9.4e-06  Score=70.55  Aligned_cols=98  Identities=11%  Similarity=0.084  Sum_probs=66.1

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcceEE---EecCCcc
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEELE---ISCPSLL  237 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~l~---i~~p~L~  237 (324)
                      .++|++|+|.+..+++- -...+..+++|++|++.++.-...-   .....+++|++|+++++. +..+.   ...++|+
T Consensus        27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE  104 (306)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred             CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence            47899999998876521 1123568999999999988532110   111245899999999876 44432   2458999


Q ss_pred             EEEEcceeeE-----EeeCCCCCceEEEEec
Q 020558          238 SFKYFGPEIK-----LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       238 ~L~~~~~~~~-----~~~~~~~~L~~l~l~~  263 (324)
                      .|.+.+....     ..+.++++|+.+++..
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  135 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  135 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCC
Confidence            9988776442     1356678888887765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.87  E-value=3.2e-06  Score=72.27  Aligned_cols=142  Identities=17%  Similarity=0.157  Sum_probs=96.9

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCccE
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLLS  238 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~  238 (324)
                      ++|++|+|.+..++.-. ...+.++++|++|++.++.-. .+.  +-..+++|++|+++++. +..+..    ..++|+.
T Consensus        37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCE
T ss_pred             CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCE
Confidence            68999999988765311 112567899999999987422 211  11345899999999876 444431    3489999


Q ss_pred             EEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEE
Q 020558          239 FKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLM  311 (324)
Q Consensus       239 L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~  311 (324)
                      |.+.+....    -.+.++++|+.+++.......   .....+..+++|+.|.++.+.+   ...+.   ..+++|++|.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~  187 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---LPKGVFDKLTSLKELRLYNNQL---KRVPEGAFDKLTELKTLK  187 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEE
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc---cCHhHccCCcccceeEecCCcC---cEeChhHhccCCCcCEEE
Confidence            999876432    136789999999998632111   1123356889999999998764   22332   6788999999


Q ss_pred             EEec
Q 020558          312 FMLV  315 (324)
Q Consensus       312 l~~~  315 (324)
                      |+.+
T Consensus       188 L~~N  191 (270)
T 2o6q_A          188 LDNN  191 (270)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9766

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.86  E-value=6.5e-06  Score=71.25  Aligned_cols=144  Identities=18%  Similarity=0.169  Sum_probs=66.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE----ecCCc
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI----SCPSL  236 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L  236 (324)
                      +..+++|++|+|.+..++.-  .. ...+++|++|++.++.-...-.....+++|++|.++++. +..+.-    ..++|
T Consensus        51 ~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL  126 (290)
T ss_dssp             GTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred             hhcCCCCCEEECCCCccCcc--cC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCC
Confidence            44555556665555443321  00 134555666665554321111111233556666665543 232221    22556


Q ss_pred             cEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeE
Q 020558          237 LSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHL  310 (324)
Q Consensus       237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L  310 (324)
                      +.|.+.+....    -.+.++++|+.+++......   .....++..+++|+.|.++.+.+   ..+|.  ....+|++|
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~l~~~~~~~l~~L~~L~L~~N~l---~~ip~~~~~~~~L~~l  200 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFA  200 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS---CCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCCCSEE
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCC---ccCHHHhcCcCCCCEEECCCCcC---CccChhhcccccCCeE
Confidence            66665554321    12344556666665541111   11112344567777777766643   23444  444567777


Q ss_pred             EEEe
Q 020558          311 MFML  314 (324)
Q Consensus       311 ~l~~  314 (324)
                      .|..
T Consensus       201 ~L~~  204 (290)
T 1p9a_G          201 FLHG  204 (290)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            7653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.85  E-value=4.4e-06  Score=73.01  Aligned_cols=143  Identities=14%  Similarity=0.085  Sum_probs=95.8

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE----EE-ecccCCccEEEEecCCCcce---EE----Ee
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL----KV-VGSLLQLKCLHIDHCNNLEE---LE----IS  232 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l----~i-~~~~~~L~~L~i~~c~~l~~---l~----i~  232 (324)
                      ++|++|+|.+..++.-.- ..+..+++|++|++.++.-.+..    .+ ...+++|++|+++++. +..   +.    -.
T Consensus       149 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAA  226 (312)
T ss_dssp             TTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHT
T ss_pred             CCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhc
Confidence            899999999988754211 22567999999999998633221    11 1456899999999886 442   11    13


Q ss_pred             cCCccEEEEcceeeE-----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCc
Q 020558          233 CPSLLSFKYFGPEIK-----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPE  306 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~  306 (324)
                      .++|+.|.+.+....     ..+..+++|+.+++....-......+   .   ++|+.|+++.+.+   ...|. ..+++
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~---~---~~L~~L~Ls~N~l---~~~p~~~~l~~  297 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---P---AKLSVLDLSYNRL---DRNPSPDELPQ  297 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC---C---SEEEEEECCSSCC---CSCCCTTTSCE
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc---c---CCceEEECCCCCC---CCChhHhhCCC
Confidence            489999999876432     13445789999999862211111111   1   7999999998865   33365 78899


Q ss_pred             ceeEEEEecchhh
Q 020558          307 LRHLMFMLVHLIV  319 (324)
Q Consensus       307 L~~L~l~~~~~i~  319 (324)
                      |++|+++.. +++
T Consensus       298 L~~L~L~~N-~l~  309 (312)
T 1wwl_A          298 VGNLSLKGN-PFL  309 (312)
T ss_dssp             EEEEECTTC-TTT
T ss_pred             CCEEeccCC-CCC
Confidence            999998654 444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.84  E-value=3.3e-06  Score=77.45  Aligned_cols=38  Identities=21%  Similarity=0.460  Sum_probs=35.6

Q ss_pred             ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558           13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL   50 (324)
Q Consensus        13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l   50 (324)
                      ..|.++.||+||+.+||+||+.++++++++|||+|+++
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI   48 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.84  E-value=4.2e-06  Score=71.63  Aligned_cols=143  Identities=15%  Similarity=0.222  Sum_probs=100.8

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE----ecCCccE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI----SCPSLLS  238 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~  238 (324)
                      .+++|+.|.+.+..+++  +.. +..+++|++|++.++.-. .+..-..+++|++|+++++. +..+.-    ..++|+.
T Consensus        39 ~l~~L~~L~l~~~~i~~--~~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS--VQG-IQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCCC--CTT-GGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCccc--ccc-cccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence            57899999999887653  222 677999999999998532 22222456899999999886 444432    3489999


Q ss_pred             EEEcceeeE-E---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEE
Q 020558          239 FKYFGPEIK-L---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLM  311 (324)
Q Consensus       239 L~~~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~  311 (324)
                      |.+.+.... +   .+.++++|+.+++......   ......+..+++|+.|.++.+.+   ...+.   ..+++|++|.
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ---SLPKGVFDKLTNLTELDLSYNQL---QSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEE
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccC---ccCHHHhccCccCCEEECCCCCc---CccCHHHhcCCccCCEEE
Confidence            999887542 1   2678899999999863211   11123356889999999998864   23333   6789999999


Q ss_pred             EEecc
Q 020558          312 FMLVH  316 (324)
Q Consensus       312 l~~~~  316 (324)
                      ++.+.
T Consensus       188 L~~N~  192 (272)
T 3rfs_A          188 LYQNQ  192 (272)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            97663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.83  E-value=2.4e-05  Score=73.95  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=24.0

Q ss_pred             cccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558          277 VNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      +..+++|+.|.++.+.. .....|.  ..+++|++|.|+.+
T Consensus       441 ~~~l~~L~~L~l~~n~l-~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          441 FNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             TTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTS
T ss_pred             hhcCCcCcEEECcCCcC-ccccchhhhhcccCCCEEECCCC
Confidence            45677777777776654 2123344  66778888877655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.83  E-value=9.2e-06  Score=75.01  Aligned_cols=121  Identities=21%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEe-cCCccEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS-CPSLLSF  239 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~-~p~L~~L  239 (324)
                      +..+++|++|++.+..+++-  .  +..+++|++|++.+|...+.+.+ ..+++|+.|+++++. +..+.+. .++|+.|
T Consensus       123 ~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L  196 (457)
T 3bz5_A          123 VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNK-ITELDVSQNKLLNRL  196 (457)
T ss_dssp             CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEECCSSC-CCCCCCTTCTTCCEE
T ss_pred             CCCCCcCCEEECCCCcccee--c--cccCCcCCEEECCCCCccccccc-ccCCcCCEEECCCCc-cceeccccCCCCCEE
Confidence            34556666666665554431  1  44566666666666644333322 233566666666554 3333332 2566666


Q ss_pred             EEcceee-EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          240 KYFGPEI-KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       240 ~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      .+.+... .+.++++++|+.+++........     . +..+++|+.|.++.+..
T Consensus       197 ~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-----p-~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          197 NCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-----D-VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             ECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-----C-CTTCTTCSEEECCSSCC
T ss_pred             ECcCCcCCeeccccCCCCCEEECcCCccccc-----C-ccccCCCCEEEeeCCcC
Confidence            6555432 12355566666666654111111     1 34556666666655543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.83  E-value=2.5e-05  Score=65.31  Aligned_cols=144  Identities=15%  Similarity=0.087  Sum_probs=88.7

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEE----EecCCccE
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELE----ISCPSLLS  238 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~  238 (324)
                      ++|++|+|.+..++.-. ...+.++++|++|++.++..++.+.  .-..+++|++|++.+|..+..+.    -..++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            58999999988765311 1125679999999999986444432  11356899999999866676654    24589999


Q ss_pred             EEEcceeeE-E-eeCCCCCce---EEEEecc-cCCcccceeccccccCCCce-EEEEEeeecceecccCC--CCCCccee
Q 020558          239 FKYFGPEIK-L-HVKNVPQLV---DVLIGGG-HGIGKGKVIGPIVNYFPQLK-TLELHVELNEEILQFPE--CDLPELRH  309 (324)
Q Consensus       239 L~~~~~~~~-~-~~~~~~~L~---~l~l~~~-~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~--~~~~~L~~  309 (324)
                      |.+.+.... + .+.++++|+   .+++... ...   ......+..+++|+ .|+++.+...   ..|.  ...++|++
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~---~i~~~~~~~l~~L~~~L~l~~n~l~---~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT---SIPVNAFQGLCNETLTLKLYNNGFT---SVQGYAFNGTKLDA  183 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCC---EECTTTTTTTBSSEEEEECCSCCCC---EECTTTTTTCEEEE
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCcchh---hcCcccccchhcceeEEEcCCCCCc---ccCHhhcCCCCCCE
Confidence            998876431 1 255666666   7777642 211   11112245677777 7777665441   2222  11256666


Q ss_pred             EEEEec
Q 020558          310 LMFMLV  315 (324)
Q Consensus       310 L~l~~~  315 (324)
                      |.++.+
T Consensus       184 L~L~~n  189 (239)
T 2xwt_C          184 VYLNKN  189 (239)
T ss_dssp             EECTTC
T ss_pred             EEcCCC
Confidence            666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.83  E-value=5.3e-06  Score=78.47  Aligned_cols=62  Identities=18%  Similarity=0.076  Sum_probs=30.3

Q ss_pred             CCCCCCcEEEeeeEEeCHHH-HHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecC
Q 020558          162 SRVKSLRFLYFDTVNVTEEI-LEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHC  223 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c  223 (324)
                      ..+++|++|++.+..++... ....+.++++|++|++.+|.-......-..+++|++|++.++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS  406 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCC
Confidence            35666777766655543210 012245667777777776642211111223455555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.83  E-value=7.2e-06  Score=69.87  Aligned_cols=123  Identities=13%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCcc
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLL  237 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~  237 (324)
                      ++..+++|++|+|.+..+++-  .. +..+++|++|++.++.-...-.+..  ++|++|.++++. +..+. + ..++|+
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~l~~l~~L~  131 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDSLIHLKNLE  131 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGGGTTCTTCC
T ss_pred             HHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCChhhcCccccc
Confidence            345566777777766665431  11 5566777777777653211101111  566666666654 22221 1 235555


Q ss_pred             EEEEcceeeE-E-eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          238 SFKYFGPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       238 ~L~~~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      .|.+.+.... + .+..+++|+.+++........     ..+..+++|+.|+++.+..
T Consensus       132 ~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-----~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          132 ILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-----TTSTTCCCCCEEEEEEEEE
T ss_pred             EEECCCCcCCCChHHccCCCCCEEECCCCcCcch-----HHhccCCCCCEEeCCCCcc
Confidence            6655544321 0 244555566555554111100     2244556666666655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.82  E-value=1.2e-05  Score=74.34  Aligned_cols=140  Identities=19%  Similarity=0.176  Sum_probs=91.8

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEe-cCCccEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEIS-CPSLLSF  239 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~-~p~L~~L  239 (324)
                      +..+++|++|++.+..+++  +.  +..+++|++|++.++.-. .+.+ ..+++|+.|.++++..+..+.+. .++|+.|
T Consensus       102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~-~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  175 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLT-EIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTL  175 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCS-CCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred             cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccc-eecc-ccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence            4567888888888777654  21  567788888888876422 2222 34578888888887655555443 3788888


Q ss_pred             EEcceee-EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEEEec
Q 020558          240 KYFGPEI-KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLV  315 (324)
Q Consensus       240 ~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  315 (324)
                      .+.+... .+.+..+++|+.+++........  .    +..+++|+.|+++.+....   .|...+++|++|.++.+
T Consensus       176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~--~----l~~l~~L~~L~Ls~N~l~~---ip~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          176 DCSFNKITELDVSQNKLLNRLNCDTNNITKL--D----LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVN  243 (457)
T ss_dssp             ECCSSCCCCCCCTTCTTCCEEECCSSCCSCC--C----CTTCTTCSEEECCSSCCSC---CCCTTCTTCSEEECCSS
T ss_pred             ECCCCccceeccccCCCCCEEECcCCcCCee--c----cccCCCCCEEECcCCcccc---cCccccCCCCEEEeeCC
Confidence            8877643 23477788888888876221111  1    4578999999998876522   33456677777777554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.79  E-value=7.6e-06  Score=71.56  Aligned_cols=147  Identities=16%  Similarity=0.101  Sum_probs=69.6

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE--EEecccC-CccEEEEecCCCcceEE---Ee
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL--KVVGSLL-QLKCLHIDHCNNLEELE---IS  232 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~-~L~~L~i~~c~~l~~l~---i~  232 (324)
                      ..+..+++|++|+|.+..+++. +...+..+++|++|++.++.-...+  .+. .++ .|++|+++++. +....   +.
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~-l~~~~~~~~~  195 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNR-LTGKIPPTFA  195 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSE-EEEECCGGGG
T ss_pred             HHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCe-eeccCChHHh
Confidence            3345667777777776665421 1122455677777777766422111  111 122 66777666543 11110   11


Q ss_pred             cCCccEEEEcceeeE----EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCC
Q 020558          233 CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLP  305 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~  305 (324)
                      ..+|+.|.+.+....    ..+.++++|+.+++... ......     -+..+++|+.|+++.+.+  ....|.  ..++
T Consensus       196 ~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l--~~~~p~~l~~l~  268 (313)
T 1ogq_A          196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRI--YGTLPQGLTQLK  268 (313)
T ss_dssp             GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEEECCSSCC--EECCCGGGGGCT
T ss_pred             CCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCCEEECcCCcc--cCcCChHHhcCc
Confidence            123666666554332    13455666666666541 111000     023456666666665543  112333  4555


Q ss_pred             cceeEEEEec
Q 020558          306 ELRHLMFMLV  315 (324)
Q Consensus       306 ~L~~L~l~~~  315 (324)
                      +|++|+|+.+
T Consensus       269 ~L~~L~Ls~N  278 (313)
T 1ogq_A          269 FLHSLNVSFN  278 (313)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECcCC
Confidence            6666655443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.79  E-value=5.9e-07  Score=81.03  Aligned_cols=38  Identities=13%  Similarity=0.171  Sum_probs=17.1

Q ss_pred             CCCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecC
Q 020558          163 RVKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRS  200 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c  200 (324)
                      .+++|++|+|+++.+++.+   +...+..|++|++|+|.+|
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            3445555555554444321   2223344555555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.79  E-value=5e-06  Score=70.25  Aligned_cols=143  Identities=14%  Similarity=0.107  Sum_probs=69.2

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE----EecCCccEE
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE----ISCPSLLSF  239 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~L  239 (324)
                      ++|++|+|.+..++.-. ...+.++++|++|++.++.-.... ..-..+++|++|+++++. +..+.    -..++|+.|
T Consensus        35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence            45666666655543211 011345566666666654311110 001233566666665543 22222    123566666


Q ss_pred             EEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEE
Q 020558          240 KYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMF  312 (324)
Q Consensus       240 ~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l  312 (324)
                      .+.+....    ..+.++++|+.+++.......   .....+..+++|+.|+|+.+.+   ...+.   ..+++|++|.|
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l  186 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS---IPAGAFDKLTNLQTLSLSTNQL---QSVPHGAFDRLGKLQTITL  186 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEEC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCCc---cCHHHcCcCcCCCEEECCCCcC---CccCHHHHhCCCCCCEEEe
Confidence            66554321    124566777777776521111   1112244667777777776654   22222   56677777777


Q ss_pred             Eec
Q 020558          313 MLV  315 (324)
Q Consensus       313 ~~~  315 (324)
                      +..
T Consensus       187 ~~N  189 (251)
T 3m19_A          187 FGN  189 (251)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.78  E-value=4e-05  Score=69.00  Aligned_cols=145  Identities=18%  Similarity=0.194  Sum_probs=95.8

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCC--------cceEEE---------ecccCCccEEEEec
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDN--------LLRLKV---------VGSLLQLKCLHIDH  222 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~--------~~~l~i---------~~~~~~L~~L~i~~  222 (324)
                      .+..+++|++|++.+..++.-.    +..++.|+.|++.++.-        ++.+.+         ....++|+.|++.+
T Consensus       160 ~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  235 (390)
T 3o6n_A          160 TFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH  235 (390)
T ss_dssp             TTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS
T ss_pred             hccCCCCCCEEECCCCcCCccc----cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCC
Confidence            4677889999999888765432    34567777776665421        111111         12236899999988


Q ss_pred             CCCcceEE--EecCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeeccee
Q 020558          223 CNNLEELE--ISCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEI  296 (324)
Q Consensus       223 c~~l~~l~--i~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  296 (324)
                      +. +..+.  -..|+|+.|.+.+....    ..+.++++|+.+++.......    +......+++|+.|+++.+..   
T Consensus       236 n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~l~~L~~L~L~~n~l---  307 (390)
T 3o6n_A          236 NN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHL---  307 (390)
T ss_dssp             SC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE----EECSSSCCTTCCEEECCSSCC---
T ss_pred             CC-CcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc----cCcccCCCCCCCEEECCCCcc---
Confidence            76 33322  13489999999887532    257789999999998622111    112235789999999998864   


Q ss_pred             cccCC--CCCCcceeEEEEecc
Q 020558          297 LQFPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       297 ~~~~~--~~~~~L~~L~l~~~~  316 (324)
                      ...|.  ..+++|++|+++.+.
T Consensus       308 ~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          308 LHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             CCCGGGHHHHTTCSEEECCSSC
T ss_pred             eecCccccccCcCCEEECCCCc
Confidence            23443  678999999997764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.76  E-value=5.3e-06  Score=71.80  Aligned_cols=143  Identities=19%  Similarity=0.235  Sum_probs=91.1

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE---ecCCccEEE
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI---SCPSLLSFK  240 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i---~~p~L~~L~  240 (324)
                      .++++.|+|.+..++.-. ...+..+++|++|++.++. ++.+.....+++|++|+++++. +..+.-   ..++|+.|.
T Consensus        30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE
Confidence            367888888877654311 1225668888888888874 3333333566888888888765 333321   347888888


Q ss_pred             EcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEE
Q 020558          241 YFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFM  313 (324)
Q Consensus       241 ~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~  313 (324)
                      +.+....    -.+.++++|+.+++......   ......+..+++|+.|.++.+.+   ...|.   ..+++|++|.|+
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELK---TLPPGLLTPTPKLEKLSLANNNL---TELPAGLLNGLENLDTLLLQ  180 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCC---SCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCC---ccChhhcccccCCCEEECCCCcC---CccCHHHhcCcCCCCEEECC
Confidence            8776432    23667888888888762211   11123345778888888887754   33443   567888888886


Q ss_pred             ec
Q 020558          314 LV  315 (324)
Q Consensus       314 ~~  315 (324)
                      ..
T Consensus       181 ~N  182 (290)
T 1p9a_G          181 EN  182 (290)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.76  E-value=7e-06  Score=75.92  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=32.7

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~  224 (324)
                      +..+++|++|++.++.+++-  . -+..+++|++|++.+|.-..... -..+++|++|.++++.
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~  276 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ  276 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred             ccccCCCCEEECCCCCcccc--h-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc
Confidence            34567777777777665431  1 14567777777777664221111 2234555666555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.75  E-value=1e-06  Score=79.41  Aligned_cols=155  Identities=18%  Similarity=0.157  Sum_probs=77.6

Q ss_pred             CCCCCCCcEEEeeeEEeC------HHHHH---HHHHcCCccceeEeecCCCcc----eE-EEecccCCccEEEEecCCCc
Q 020558          161 LSRVKSLRFLYFDTVNVT------EEILE---FFINNCPNLDDLRVGRSDNLL----RL-KVVGSLLQLKCLHIDHCNNL  226 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~------~~~l~---~ll~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~i~~c~~l  226 (324)
                      +..+++|++|+|.++.+.      ..++.   ..+..+++|++|+|.++.-..    .+ ..-..+++|++|++++|. +
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence            445666666666654322      11222   223456666666666653211    00 011234667777776665 2


Q ss_pred             ceEE---E-ec-------------CCccEEEEcceeeE--------EeeCCCCCceEEEEecccCCc--ccceecccccc
Q 020558          227 EELE---I-SC-------------PSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGHGIG--KGKVIGPIVNY  279 (324)
Q Consensus       227 ~~l~---i-~~-------------p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~--~~~~~~~l~~~  279 (324)
                      ....   + .+             |+|++|.+.+....        -.+..+++|+.+++.......  ....+...+..
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence            2100   0 01             67777777655321        123456677777776421110  00011114567


Q ss_pred             CCCceEEEEEeeecce--ecccCC--CCCCcceeEEEEecc
Q 020558          280 FPQLKTLELHVELNEE--ILQFPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       280 ~~~L~~L~l~~~~~~~--~~~~~~--~~~~~L~~L~l~~~~  316 (324)
                      +++|+.|.|+.+.+..  ...++.  ..+++|++|.|+.+.
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            7888888887776410  122333  677788888886663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.75  E-value=1.3e-05  Score=76.39  Aligned_cols=98  Identities=13%  Similarity=0.065  Sum_probs=72.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE-ecCCccEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI-SCPSLLSF  239 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~L  239 (324)
                      +..+++|+.|.+.+..+..  +. -+..+++|++|++.+|.-...-.+  .+++|++|.+.++.....+.+ ..|+|+.|
T Consensus       281 ~~~l~~L~~L~l~~~~~~~--l~-~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  355 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKY--LE-DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYL  355 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCC--CC-CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred             cccCCCCCEEEecCccchh--hh-hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchhhccCCCCCEE
Confidence            5678999999999887643  22 356789999999999865221122  568999999999865554433 44899999


Q ss_pred             EEcceeeE------EeeCCCCCceEEEEec
Q 020558          240 KYFGPEIK------LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       240 ~~~~~~~~------~~~~~~~~L~~l~l~~  263 (324)
                      .+.+....      ..+.++++|+.+++..
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~  385 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSF  385 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCC
Confidence            99877432      2456889999999876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.73  E-value=4e-05  Score=70.36  Aligned_cols=146  Identities=15%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHH--cCCccceeEeecCCC-------------------------cceEEE-------
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFIN--NCPNLDDLRVGRSDN-------------------------LLRLKV-------  208 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~-------------------------~~~l~i-------  208 (324)
                      .+++|++|++.+..+++.....+..  ..+.|+.|.+.++..                         ++.+.+       
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence            4578999999998887654444332  235556665554421                         111110       


Q ss_pred             -----ecccCCccEEEEecCCCcceEEE----ecCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceecc
Q 020558          209 -----VGSLLQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGP  275 (324)
Q Consensus       209 -----~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~  275 (324)
                           -..+++|++|+++++. +..+..    ..++|+.|.+.+....    ..+.++++|+.+++......   ....+
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~  365 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR---ALGDQ  365 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC---EECTT
T ss_pred             cchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc---ccChh
Confidence                 1233566666666554 333321    2366777776655321    13556677777777642111   11112


Q ss_pred             ccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558          276 IVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV  315 (324)
Q Consensus       276 l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~  315 (324)
                      .+..+++|+.|+++.+.+   ...+.   ..+++|++|.|+..
T Consensus       366 ~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          366 SFLGLPNLKELALDTNQL---KSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             TTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSS
T ss_pred             hccccccccEEECCCCcc---ccCCHhHhccCCcccEEEccCC
Confidence            245677888888877653   23333   56677888877654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.72  E-value=9.6e-06  Score=74.51  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=23.5

Q ss_pred             cccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558          277 VNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      +..+++|+.|+++.+.+  ....|.  ..+++|++|+++.+
T Consensus       343 ~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHI--RALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             GTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSS
T ss_pred             hcCcccCCEEECCCCcc--cccChhhccccccccEEECCCC
Confidence            45677777777777654  111222  56778888888664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.70  E-value=1.3e-05  Score=70.42  Aligned_cols=144  Identities=13%  Similarity=0.073  Sum_probs=78.0

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE----EecCC
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE----ISCPS  235 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~  235 (324)
                      .+..+++|++|+|.+..+++-. ..-+..+++|++|++.++.- +.+... ..++|++|.++++. +..+.    -..++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~  146 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQ  146 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTT
T ss_pred             hhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcC-CccChh-hcccccEEECCCCc-ccccCHhHhcCCcc
Confidence            4566777777777766554210 11145667777777776632 111111 12567777776654 33322    12367


Q ss_pred             ccEEEEcceeeE------EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcc
Q 020558          236 LLSFKYFGPEIK------LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPEL  307 (324)
Q Consensus       236 L~~L~~~~~~~~------~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L  307 (324)
                      |+.|.+.+....      ..+.++++|+.+++..........      ...++|+.|.++.+.+..  ..+.  ..+++|
T Consensus       147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~------~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L  218 (330)
T 1xku_A          147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ------GLPPSLTELHLDGNKITK--VDAASLKGLNNL  218 (330)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS------SCCTTCSEEECTTSCCCE--ECTGGGTTCTTC
T ss_pred             ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc------cccccCCEEECCCCcCCc--cCHHHhcCCCCC
Confidence            777776654321      134566777777776521111111      112678888887765411  1122  677889


Q ss_pred             eeEEEEec
Q 020558          308 RHLMFMLV  315 (324)
Q Consensus       308 ~~L~l~~~  315 (324)
                      ++|.++.+
T Consensus       219 ~~L~Ls~n  226 (330)
T 1xku_A          219 AKLGLSFN  226 (330)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            99988765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.69  E-value=7.2e-06  Score=71.72  Aligned_cols=151  Identities=15%  Similarity=0.115  Sum_probs=97.0

Q ss_pred             CCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcc-eEE--E-e
Q 020558          158 PCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLE-ELE--I-S  232 (324)
Q Consensus       158 ~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~-~l~--i-~  232 (324)
                      |..+..+++|++|+|.+..+++. +..-+..+++|++|++.++.-...+ ..-..+++|++|+++++. +. .+.  + .
T Consensus        94 p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~  171 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGS  171 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGC
T ss_pred             ChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhh
Confidence            34456789999999998876521 1122567899999999987422111 111345899999998876 33 221  1 2


Q ss_pred             cC-CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCc
Q 020558          233 CP-SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPE  306 (324)
Q Consensus       233 ~p-~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~  306 (324)
                      .+ +|+.|.+.+....    -.+..++ |+.+++......   ......+..+++|+.|.++.+..  ....+. ..+++
T Consensus       172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~l~~  245 (313)
T 1ogq_A          172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE---GDASVLFGSDKNTQKIHLAKNSL--AFDLGKVGLSKN  245 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE---ECCGGGCCTTSCCSEEECCSSEE--CCBGGGCCCCTT
T ss_pred             hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc---CcCCHHHhcCCCCCEEECCCCce--eeecCcccccCC
Confidence            33 8999998876542    1344555 888888752111   11224456899999999998865  222333 67889


Q ss_pred             ceeEEEEecc
Q 020558          307 LRHLMFMLVH  316 (324)
Q Consensus       307 L~~L~l~~~~  316 (324)
                      |++|.++.+.
T Consensus       246 L~~L~Ls~N~  255 (313)
T 1ogq_A          246 LNGLDLRNNR  255 (313)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECcCCc
Confidence            9999997663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.69  E-value=9.3e-06  Score=77.57  Aligned_cols=61  Identities=20%  Similarity=0.140  Sum_probs=32.7

Q ss_pred             eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558          250 VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       250 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~  316 (324)
                      +.++++|+.+++......   ......+..+++|+.|.|+.+.+.   ..|.  ..+++|++|.|+.+.
T Consensus       250 l~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELE---KIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             GGGCTTCSEEECCSSCCC---EEESGGGTTCSSCCEEECTTSCCC---EEECSSSCCTTCCEEECCSSC
T ss_pred             hccCCCCCEEECCCCccC---CCCHHHhcCccCCCEEECCCCCCC---CCCcccccCCCCcEEECCCCC
Confidence            344555555555531110   111123456777777777766541   2233  567788888887653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.66  E-value=2.5e-05  Score=71.33  Aligned_cols=37  Identities=22%  Similarity=0.487  Sum_probs=35.3

Q ss_pred             ccccCCCCChHHHHHHHhcCChhHHHHhhhcccchhh
Q 020558           13 LKDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKY   49 (324)
Q Consensus        13 ~~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~   49 (324)
                      ..|.++.||+|++.+||+||+.+|++++++|||+|+.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~   51 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI   51 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence            4689999999999999999999999999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.65  E-value=7.5e-06  Score=70.87  Aligned_cols=140  Identities=17%  Similarity=0.224  Sum_probs=98.9

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFK  240 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~  240 (324)
                      .+++|++|++.++.+.+  +.. +..+++|++|++.++.-..... -..+++|++|.++++. +..+. + ..++|+.|.
T Consensus        44 ~l~~L~~L~l~~~~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~  118 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLS  118 (291)
T ss_dssp             HHHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEE
T ss_pred             hcCcccEEEccCCCccc--Chh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEE
Confidence            57899999999887653  222 6789999999999985322111 3456899999999876 33321 1 348999999


Q ss_pred             EcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          241 YFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       241 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      +.+....  -.+.++++|+.+++........     ..+..+++|+.|.++.+.+   ...+. ..+++|++|.++.+
T Consensus       119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l---~~~~~l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCC---CCCGGGTTCTTCCEEECCSS
T ss_pred             CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCcc---ccchhhcCCCccCEEECCCC
Confidence            8877542  1366789999999986221111     3467899999999998864   22333 78899999999766

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.64  E-value=1.6e-06  Score=79.88  Aligned_cols=153  Identities=14%  Similarity=0.129  Sum_probs=91.6

Q ss_pred             CCCCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecCCCcce-E-EEecccC----CccEEEEecCCCcce----
Q 020558          162 SRVKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRSDNLLR-L-KVVGSLL----QLKCLHIDHCNNLEE----  228 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~~-l-~i~~~~~----~L~~L~i~~c~~l~~----  228 (324)
                      ..+++|++|+|.++.+++..   +...+..+++|++|++.++.-... . .+...++    +|++|++++|. +..    
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~  103 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG  103 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHH
Confidence            45788888888888887753   445567788888888888742110 0 1111222    68888888876 331    


Q ss_pred             -E---EEecCCccEEEEcceeeE---------EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecc
Q 020558          229 -L---EISCPSLLSFKYFGPEIK---------LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNE  294 (324)
Q Consensus       229 -l---~i~~p~L~~L~~~~~~~~---------~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  294 (324)
                       +   --..++|+.|.+.+....         ......++|+++++... ........+.+.+..+++|+.|.++.+...
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence             1   124578888888776431         01223567888888752 211111223445567889999999877652


Q ss_pred             ee--cccCC---CCCCcceeEEEEec
Q 020558          295 EI--LQFPE---CDLPELRHLMFMLV  315 (324)
Q Consensus       295 ~~--~~~~~---~~~~~L~~L~l~~~  315 (324)
                      ..  ..+..   ...++|++|+++.+
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n  209 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESC  209 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCC
Confidence            11  11111   24668999998776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=7.6e-06  Score=81.27  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=38.0

Q ss_pred             CCCCCCCCCCCcEEEeeeEEeCHH----------------HHHHHHH--cCCccceeEeecCCCcceEE-EecccCCccE
Q 020558          157 SPCGLSRVKSLRFLYFDTVNVTEE----------------ILEFFIN--NCPNLDDLRVGRSDNLLRLK-VVGSLLQLKC  217 (324)
Q Consensus       157 l~~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~  217 (324)
                      +|..+..+++|++|+|++..++++                .+..-+.  ++++|++|+|.+|.-...+. .-..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            455666777777777777776652                1222222  67777777777764322111 1123356666


Q ss_pred             EEEecCC
Q 020558          218 LHIDHCN  224 (324)
Q Consensus       218 L~i~~c~  224 (324)
                      |+++++.
T Consensus       520 L~Ls~N~  526 (876)
T 4ecn_A          520 LNIACNR  526 (876)
T ss_dssp             EECTTCT
T ss_pred             EECcCCC
Confidence            6665554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.63  E-value=0.00024  Score=70.64  Aligned_cols=40  Identities=15%  Similarity=0.193  Sum_probs=24.2

Q ss_pred             CCCCCCCCCcEEEeeeEEeCH---HHHHHHHHcCCccceeEeecC
Q 020558          159 CGLSRVKSLRFLYFDTVNVTE---EILEFFINNCPNLDDLRVGRS  200 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~c  200 (324)
                      ..+..+++|++|+|.+..++.   ..+..+..  ++|+.|.+.++
T Consensus       142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n  184 (844)
T 3j0a_A          142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAAN  184 (844)
T ss_dssp             GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCS
T ss_pred             hhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCC
Confidence            346678888888888776543   34444321  55666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.62  E-value=0.00012  Score=70.32  Aligned_cols=123  Identities=13%  Similarity=0.059  Sum_probs=75.6

Q ss_pred             cCceEEEEEcCCCCCCCCCCcceeeCCCCcccccCCCCCCCCCCCcEEEeeeEE-eCHH----HHHHH--HHcCCcccee
Q 020558          123 KRAQKFELNLFPALCWPPASGIYEFSQGCYDYLKSPCGLSRVKSLRFLYFDTVN-VTEE----ILEFF--INNCPNLDDL  195 (324)
Q Consensus       123 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~L~~L~L~~~~-~~~~----~l~~l--l~~cp~Le~L  195 (324)
                      .++++|++..+.-.                  -.+|..+..+++|++|+|.++. +++.    .+..+  ...+++|++|
T Consensus       249 ~~L~~L~L~~n~l~------------------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          249 KDLTDVEVYNCPNL------------------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TTCCEEEEECCTTC------------------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             CCCCEEEecCCcCC------------------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence            47888988654322                  0234556789999999999987 7762    23332  1356899999


Q ss_pred             EeecCCCcceEE--EecccCCccEEEEecCCCcceEE--EecCCccEEEEcceeeE---EeeCCCCC-ceEEEEec
Q 020558          196 RVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELE--ISCPSLLSFKYFGPEIK---LHVKNVPQ-LVDVLIGG  263 (324)
Q Consensus       196 ~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~L~~~~~~~~---~~~~~~~~-L~~l~l~~  263 (324)
                      ++.++.-.....  .-..+++|++|+++++.--+.+.  -..++|+.|.+.+....   -.+.++++ |+.+++..
T Consensus       311 ~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             ECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred             ECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence            999885332111  12345788888888776221332  12367777777665432   12445666 77777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.62  E-value=3.4e-05  Score=73.62  Aligned_cols=77  Identities=17%  Similarity=0.184  Sum_probs=51.9

Q ss_pred             cCCccEEEEcceee----EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCc
Q 020558          233 CPSLLSFKYFGPEI----KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPE  306 (324)
Q Consensus       233 ~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~  306 (324)
                      .|+|+.|.+.+...    +-.+.++++|+.+++.......    +......+++|+.|+|+.+..   ...|.  ..+++
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~Ls~N~l---~~i~~~~~~l~~  325 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHL---LHVERNQPQFDR  325 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE----EECSSSCCTTCCEEECCSSCC---CCCGGGHHHHTT
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC----CCcccccCCCCcEEECCCCCC---CccCcccccCCC
Confidence            47788888776643    1246788999999887622111    122235688999999998864   23444  67889


Q ss_pred             ceeEEEEecc
Q 020558          307 LRHLMFMLVH  316 (324)
Q Consensus       307 L~~L~l~~~~  316 (324)
                      |++|.|+.+.
T Consensus       326 L~~L~L~~N~  335 (597)
T 3oja_B          326 LENLYLDHNS  335 (597)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEECCCCC
Confidence            9999987764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.61  E-value=6.2e-07  Score=69.40  Aligned_cols=130  Identities=17%  Similarity=0.137  Sum_probs=66.6

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcc
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFG  243 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~  243 (324)
                      +++|++|++.++.++++.+...+..+++|++|++.+|.- +.+..-..+++|++|+++++. +...              
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~-i~~~--------------   79 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSDNR-VSGG--------------   79 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCCTTCCCCTTCCEEECCSSC-CCSC--------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCchhhhcCCCCCEEECCCCc-ccch--------------
Confidence            467888888877776434444456778888888877732 222222234666777766654 1110              


Q ss_pred             eeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccC--C-CCCCcceeEEEE
Q 020558          244 PEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFP--E-CDLPELRHLMFM  313 (324)
Q Consensus       244 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~--~-~~~~~L~~L~l~  313 (324)
                        .+..+.++++|+.+++......  +......+..+++|+.|.++.+........+  . ..+++|++|+++
T Consensus        80 --~~~~~~~l~~L~~L~ls~N~i~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           80 --LEVLAEKCPNLTHLNLSGNKIK--DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             --THHHHHHCTTCCEEECTTSCCC--SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             --HHHHhhhCCCCCEEECCCCcCC--ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence              0112233556666665541111  1001122456777777777766531111100  1 456677766553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.61  E-value=5e-05  Score=72.71  Aligned_cols=114  Identities=14%  Similarity=0.072  Sum_probs=61.3

Q ss_pred             CCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEecccCCc
Q 020558          189 CPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGIG  268 (324)
Q Consensus       189 cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  268 (324)
                      +++|+.|++.++.-. .  +....++|+.|.+.++. +..+.-..++|+.|.+.+....-.-..+++|+.+++...    
T Consensus       180 ~~~L~~L~Ls~N~l~-~--l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N----  251 (622)
T 3g06_A          180 PSGLQELSVSDNQLA-S--LPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN----  251 (622)
T ss_dssp             CTTCCEEECCSSCCS-C--CCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS----
T ss_pred             CCCCcEEECCCCCCC-C--CCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC----
Confidence            355555555554211 1  11122455666555543 333332336666666665533211144566776666541    


Q ss_pred             ccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558          269 KGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       269 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~  316 (324)
                         .+..+...+++|+.|.++.+.+   ..+|.  ..+++|+.|+|+.+.
T Consensus       252 ---~L~~lp~~~~~L~~L~Ls~N~L---~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          252 ---RLTSLPMLPSGLLSLSVYRNQL---TRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             ---CCSCCCCCCTTCCEEECCSSCC---CSCCGGGGGSCTTCEEECCSCC
T ss_pred             ---CCCcCCcccccCcEEeCCCCCC---CcCCHHHhhccccCEEEecCCC
Confidence               1223344678888888887754   24455  677888888886653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.61  E-value=1.2e-05  Score=68.74  Aligned_cols=13  Identities=15%  Similarity=0.056  Sum_probs=8.9

Q ss_pred             CCcceeEEEEecc
Q 020558          304 LPELRHLMFMLVH  316 (324)
Q Consensus       304 ~~~L~~L~l~~~~  316 (324)
                      ..+|++|+++.+.
T Consensus       199 ~~~L~~L~L~~n~  211 (276)
T 2z62_A          199 EIRLKELALDTNQ  211 (276)
T ss_dssp             SCCEEEEECCSSC
T ss_pred             CCcccEEECCCCc
Confidence            3478888887553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.60  E-value=0.00016  Score=67.63  Aligned_cols=152  Identities=10%  Similarity=0.050  Sum_probs=89.6

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHH--cCCccceeEeecCCCcceE--EEe----cccC-------------------
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFIN--NCPNLDDLRVGRSDNLLRL--KVV----GSLL-------------------  213 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~~~~l--~i~----~~~~-------------------  213 (324)
                      +..+++|++|++.++.+++..+..+..  .+++|++|++.+|.-.+.+  .+.    ..++                   
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~  295 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI  295 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred             hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence            567889999999999998877666544  4679999999987411100  000    1223                   


Q ss_pred             -------CccEEEEecCCCcceEE--EecCCccEEEEcceee----EEeeCCCCCceEEEEecccCCcccceeccccccC
Q 020558          214 -------QLKCLHIDHCNNLEELE--ISCPSLLSFKYFGPEI----KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYF  280 (324)
Q Consensus       214 -------~L~~L~i~~c~~l~~l~--i~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~  280 (324)
                             +|+.|.++++. +..+.  -..++|+.|.+.+...    +-.+.++++|+.+++........+ .+...+..+
T Consensus       296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~l  373 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS-KIAEMTTQM  373 (520)
T ss_dssp             HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-HHHHHHTTC
T ss_pred             hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc-cchHHHhhC
Confidence                   35555555444 22222  2446777777766532    123566777777777642111100 111234678


Q ss_pred             CCceEEEEEeeecceecccCC---CCCCcceeEEEEecc
Q 020558          281 PQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLVH  316 (324)
Q Consensus       281 ~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~  316 (324)
                      ++|+.|+++.+.. . ...|.   ..+++|++|+++.+.
T Consensus       374 ~~L~~L~Ls~N~l-~-~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          374 KSLQQLDISQNSV-S-YDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             TTCCEEECCSSCC-B-CCGGGCSCCCCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcC-C-cccccchhccCccCCEEECcCCC
Confidence            8888888887764 1 11332   566888998887663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.59  E-value=5.6e-05  Score=72.38  Aligned_cols=115  Identities=16%  Similarity=0.028  Sum_probs=62.5

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF  242 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~  242 (324)
                      .+++|++|+|+++.++.  +.   ...++|++|++.++.-..   +....++|+.|+++++. +..+....++|+.|.+.
T Consensus        79 ~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~l~~---l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls  149 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNPLTH---LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVS  149 (622)
T ss_dssp             CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCCCCC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred             cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCcCCC---CCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECc
Confidence            35666666666665442  11   145666676666653211   11133567777766654 44444344677777766


Q ss_pred             ceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          243 GPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       243 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      +....-.-...++|+.+++...       .+..+...+++|+.|+++.+.+
T Consensus       150 ~N~l~~l~~~~~~L~~L~L~~N-------~l~~l~~~~~~L~~L~Ls~N~l  193 (622)
T 3g06_A          150 DNQLASLPALPSELCKLWAYNN-------QLTSLPMLPSGLQELSVSDNQL  193 (622)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSS-------CCSCCCCCCTTCCEEECCSSCC
T ss_pred             CCcCCCcCCccCCCCEEECCCC-------CCCCCcccCCCCcEEECCCCCC
Confidence            6533211123456666666531       1223335678888888887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.58  E-value=8.7e-06  Score=77.77  Aligned_cols=140  Identities=17%  Similarity=0.217  Sum_probs=99.3

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFK  240 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~  240 (324)
                      .+++|+.|.+.++.+.+  +.. +..+++|+.|+|.+|.-..... -..+++|+.|.+++|. +..+. + ..++|+.|.
T Consensus        41 ~L~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~  115 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLS  115 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC--CTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEE
T ss_pred             cCCCCCEEECcCCCCCC--ChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEE
Confidence            57889999998877653  222 6789999999999985222111 3456899999999876 44332 1 348999999


Q ss_pred             EcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccC-CCCCCcceeEEEEec
Q 020558          241 YFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFP-ECDLPELRHLMFMLV  315 (324)
Q Consensus       241 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~  315 (324)
                      +.+....  -.+.++++|+.+++........     ..+..+++|+.|.|+.+.+   ...+ ...+++|++|.|+.+
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l---~~~~~l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCC---CCCGGGTTCTTCCEEECCSS
T ss_pred             ecCCCCCCCccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcC---CCchhhccCCCCCEEECcCC
Confidence            9877542  1467889999999986221111     3467899999999998864   2222 378899999999776

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.58  E-value=1.1e-05  Score=73.49  Aligned_cols=41  Identities=29%  Similarity=0.592  Sum_probs=37.3

Q ss_pred             ccccCCCCChH----HHHHHHhcCChhHHHHhhhcccchhh------cccc
Q 020558           13 LKDWVSRLPDD----ILVNIISRLTLKEAARTSVLSSRWKY------LWTY   53 (324)
Q Consensus        13 ~~d~~s~LPd~----vl~~Ils~L~~~d~~r~s~vsk~W~~------lw~~   53 (324)
                      ..|.++.||+|    |+.+||+||+.++++++++|||+|++      +|+.
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~   57 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK   57 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            46899999999    99999999999999999999999984      5765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.58  E-value=3.5e-05  Score=74.13  Aligned_cols=148  Identities=11%  Similarity=0.062  Sum_probs=84.8

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEe--c-------ccCCccEEEEecCCCcceEE--E
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV--G-------SLLQLKCLHIDHCNNLEELE--I  231 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~-------~~~~L~~L~i~~c~~l~~l~--i  231 (324)
                      .+++|++|+|.+..++. .-..+...+++|++|++.++.-. .+...  .       .+++|+.|+++++. +..+.  +
T Consensus       431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~  507 (636)
T 4eco_A          431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDF  507 (636)
T ss_dssp             CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGG
T ss_pred             cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhh
Confidence            34567777777666541 11233456777888888776422 11100  0       01278888887765 34332  1


Q ss_pred             ---ecCCccEEEEcceee---EEeeCCCCCceEEEEeccc---CCcccceeccccccCCCceEEEEEeeecceecccCCC
Q 020558          232 ---SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGH---GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPEC  302 (324)
Q Consensus       232 ---~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~  302 (324)
                         ..++|+.|.+.+...   +..+.++++|+.+++....   .+.....+..-+..+++|+.|+|+.+.+   ..+|..
T Consensus       508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l---~~ip~~  584 (636)
T 4eco_A          508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI---RKVNEK  584 (636)
T ss_dssp             STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC---CBCCSC
T ss_pred             hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC---CccCHh
Confidence               447888888776533   2345677888888885311   1111111222345788888888887754   445554


Q ss_pred             CCCcceeEEEEecc
Q 020558          303 DLPELRHLMFMLVH  316 (324)
Q Consensus       303 ~~~~L~~L~l~~~~  316 (324)
                      .+++|++|+|+.++
T Consensus       585 ~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          585 ITPNISVLDIKDNP  598 (636)
T ss_dssp             CCTTCCEEECCSCT
T ss_pred             HhCcCCEEECcCCC
Confidence            44788888887663

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.57  E-value=4.5e-06  Score=72.87  Aligned_cols=149  Identities=14%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHH--cCCccceeEeecCCCcceE--EEe-cccCCccEEEEecCCCcce------EE-Ee
Q 020558          165 KSLRFLYFDTVNVTEEILEFFIN--NCPNLDDLRVGRSDNLLRL--KVV-GSLLQLKCLHIDHCNNLEE------LE-IS  232 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~~~~l--~i~-~~~~~L~~L~i~~c~~l~~------l~-i~  232 (324)
                      ..++.|.+.++.+++..+..+..  .+++|++|++.+|.-....  .+. ...++|++|+++++.--..      .. ..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            35678888888887776665533  4567888888877532211  110 3346677777766542110      00 13


Q ss_pred             cCCccEEEEcceeeE----EeeCCCCCceEEEEeccc-C---------------------------CcccceeccccccC
Q 020558          233 CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGH-G---------------------------IGKGKVIGPIVNYF  280 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~-~---------------------------~~~~~~~~~l~~~~  280 (324)
                      .++|+.|.+.+....    -.+.++++|+.+++.... .                           ...+.....++..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            456666666554321    134455666666655411 0                           00000011123566


Q ss_pred             CCceEEEEEeeecceecccCC--CC---CCcceeEEEEec
Q 020558          281 PQLKTLELHVELNEEILQFPE--CD---LPELRHLMFMLV  315 (324)
Q Consensus       281 ~~L~~L~l~~~~~~~~~~~~~--~~---~~~L~~L~l~~~  315 (324)
                      ++|+.|+++.+.+.  ...|.  ..   +++|++|.|+.+
T Consensus       224 ~~L~~L~Ls~N~l~--~~~p~~~~~~~~~~~L~~L~Ls~N  261 (310)
T 4glp_A          224 VQPHSLDLSHNSLR--ATVNPSAPRCMWSSALNSLNLSFA  261 (310)
T ss_dssp             CCCSSEECTTSCCC--CCCCSCCSSCCCCTTCCCEECCSS
T ss_pred             CCCCEEECCCCCCC--ccchhhHHhccCcCcCCEEECCCC
Confidence            78888888777641  11132  23   368888888655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.54  E-value=3.9e-06  Score=77.27  Aligned_cols=159  Identities=12%  Similarity=0.043  Sum_probs=105.0

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCC----ccceeEeecCCCcc----e-EEEecccCCccEEEEecCCCcceEE
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCP----NLDDLRVGRSDNLL----R-LKVVGSLLQLKCLHIDHCNNLEELE  230 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp----~Le~L~l~~c~~~~----~-l~i~~~~~~L~~L~i~~c~~l~~l~  230 (324)
                      .+..+++|++|+|++..+++..+..+...++    +|++|++.+|.-..    . ...-..+++|++|+++++. +....
T Consensus        51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~  129 (461)
T 1z7x_W           51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG  129 (461)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH
T ss_pred             HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH
Confidence            3456799999999999998888888888777    79999999995321    1 1112356899999999876 33211


Q ss_pred             E---------ecCCccEEEEcceeeE--------EeeCCCCCceEEEEecccCCc-cccee-ccccccCCCceEEEEEee
Q 020558          231 I---------SCPSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGHGIG-KGKVI-GPIVNYFPQLKTLELHVE  291 (324)
Q Consensus       231 i---------~~p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~-~~~~~-~~l~~~~~~L~~L~l~~~  291 (324)
                      .         ..++|+.|.+.++...        -.+..+++|+++++....... ....+ ..+....++|+.|.++.+
T Consensus       130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  209 (461)
T 1z7x_W          130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC  209 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence            1         1357999999877432        124567999999998622111 01111 112235679999999988


Q ss_pred             ecceec--ccCC--CCCCcceeEEEEecchhhh
Q 020558          292 LNEEIL--QFPE--CDLPELRHLMFMLVHLIVA  320 (324)
Q Consensus       292 ~~~~~~--~~~~--~~~~~L~~L~l~~~~~i~~  320 (324)
                      ......  .++.  ..+++|++|.++.+ ++++
T Consensus       210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~  241 (461)
T 1z7x_W          210 GVTSDNCRDLCGIVASKASLRELALGSN-KLGD  241 (461)
T ss_dssp             CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHH
T ss_pred             CCcHHHHHHHHHHHHhCCCccEEeccCC-cCCh
Confidence            652111  1232  57899999999877 3443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.53  E-value=1.9e-05  Score=67.52  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             CCceEEEEEeeecceecccCC---CCCCcceeEEEEe
Q 020558          281 PQLKTLELHVELNEEILQFPE---CDLPELRHLMFML  314 (324)
Q Consensus       281 ~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~  314 (324)
                      .+|+.|+++.+..   ...+.   ..+++|++|+++.
T Consensus       200 ~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          200 IRLKELALDTNQL---KSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CCEEEEECCSSCC---SCCCTTTTTTCCSCCEEECCS
T ss_pred             CcccEEECCCCce---eecCHhHhcccccccEEEccC
Confidence            4799999987764   33333   6788999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.53  E-value=6.8e-06  Score=65.44  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=45.3

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE----EecCCcc
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE----ISCPSLL  237 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~  237 (324)
                      ..+++|++|++.+..++.  +..+...+|+|++|++.++. ++.+..-..+++|+.|+++++. +..+.    -..|+|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence            356788888888777652  33334445688888888874 2222222345677777777665 44332    1224555


Q ss_pred             EEEEcce
Q 020558          238 SFKYFGP  244 (324)
Q Consensus       238 ~L~~~~~  244 (324)
                      .|.+.+.
T Consensus        92 ~L~L~~N   98 (176)
T 1a9n_A           92 ELILTNN   98 (176)
T ss_dssp             EEECCSC
T ss_pred             EEECCCC
Confidence            5555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.45  E-value=3.6e-05  Score=65.47  Aligned_cols=140  Identities=15%  Similarity=0.162  Sum_probs=60.2

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-EecCCccEEEE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-ISCPSLLSFKY  241 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i~~p~L~~L~~  241 (324)
                      .+++|++|++.++.+++  +. -+..+++|++|++.++.-..... -..+++|++|+++++. +..+. +..++|+.|.+
T Consensus        39 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L  113 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFL  113 (263)
T ss_dssp             HHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEEC
T ss_pred             hcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEc
Confidence            34555555555554432  11 13445556666655542111000 2233555555555543 22110 11155555555


Q ss_pred             cceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          242 FGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       242 ~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      .+....  -.+.++++|+.+++........     ..+..+++|+.|.++.+.+...   +. ..+++|++|.++..
T Consensus       114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred             cCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence            544321  1244555555555553111100     1234555556555555543111   22 45555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.45  E-value=2.6e-05  Score=68.62  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=16.4

Q ss_pred             ccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEe
Q 020558          278 NYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFML  314 (324)
Q Consensus       278 ~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~  314 (324)
                      ..+++|+.|+++.+.+   ..+|.  ..+++|++|.++.
T Consensus       238 ~~l~~L~~L~L~~N~l---~~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKL---SRVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             GGCTTCCEEECCSSCC---CBCCTTGGGCTTCCEEECCS
T ss_pred             hCCCCCCEEECCCCcC---eecChhhhcCccCCEEECCC
Confidence            3455555555555433   12333  4445555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.43  E-value=3.5e-05  Score=74.60  Aligned_cols=43  Identities=12%  Similarity=0.092  Sum_probs=23.7

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCC
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSD  201 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  201 (324)
                      ..+..+++|+.|+|.+..+++..-...+.++++|++|++.+|.
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            3455667777777776554321001123456677777776653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.37  E-value=0.00011  Score=68.80  Aligned_cols=43  Identities=12%  Similarity=0.198  Sum_probs=21.2

Q ss_pred             CCCCCCCCCcEEEeeeEEeCH-HHHHHHHHcCCccceeEeecCC
Q 020558          159 CGLSRVKSLRFLYFDTVNVTE-EILEFFINNCPNLDDLRVGRSD  201 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~  201 (324)
                      ..+..+++|++|+|.++.+++ ..+...+..+++|++|++.++.
T Consensus       342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred             hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence            334455555555555555443 1233334455555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.37  E-value=7.8e-06  Score=73.00  Aligned_cols=150  Identities=11%  Similarity=0.072  Sum_probs=82.5

Q ss_pred             CCCcEEEeeeEEeCH---HHHHHHHHcC-CccceeEeecCCCcceEEE---e---cc-cCCccEEEEecCCCcceEEE--
Q 020558          165 KSLRFLYFDTVNVTE---EILEFFINNC-PNLDDLRVGRSDNLLRLKV---V---GS-LLQLKCLHIDHCNNLEELEI--  231 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~---~~l~~ll~~c-p~Le~L~l~~c~~~~~l~i---~---~~-~~~L~~L~i~~c~~l~~l~i--  231 (324)
                      ++|++|+|.++.+++   ..+...+..+ ++|++|++.+|.- +....   .   .. +.+|++|++++|. +.....  
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~  157 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE  157 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence            677777777776553   3344555555 6777777777642 11111   0   01 2578888887765 331111  


Q ss_pred             ------ec-CCccEEEEcceeeE------E--eeCCC-CCceEEEEeccc-CCcccceecccccc-CCCceEEEEEeeec
Q 020558          232 ------SC-PSLLSFKYFGPEIK------L--HVKNV-PQLVDVLIGGGH-GIGKGKVIGPIVNY-FPQLKTLELHVELN  293 (324)
Q Consensus       232 ------~~-p~L~~L~~~~~~~~------~--~~~~~-~~L~~l~l~~~~-~~~~~~~~~~l~~~-~~~L~~L~l~~~~~  293 (324)
                            .. ++|+.|.+.+....      +  .+..+ ++|+.+++.... .......+.+.+.. .++|+.|+|+.+.+
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence                  12 37888887766321      0  13344 488888887622 11111112222233 46899999988765


Q ss_pred             ceec--ccCC--CCCCcceeEEEEecc
Q 020558          294 EEIL--QFPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       294 ~~~~--~~~~--~~~~~L~~L~l~~~~  316 (324)
                      ....  .+..  ..+++|++|.++.+.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            2111  1112  677889999998774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.35  E-value=7.1e-05  Score=60.58  Aligned_cols=63  Identities=24%  Similarity=0.350  Sum_probs=37.0

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~  224 (324)
                      +..+++|++|+|.++.+++..... +..+++|++|++.+|..++.+..-..+++|++|++++|.
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred             hcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence            456677777777777666533333 456777777777776533333222344566666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.34  E-value=0.00014  Score=72.23  Aligned_cols=155  Identities=12%  Similarity=0.095  Sum_probs=87.7

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcce-EEEecccCCccEEEEecCCCcceEE----Eec
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLR-LKVVGSLLQLKCLHIDHCNNLEELE----ISC  233 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~i~~c~~l~~l~----i~~  233 (324)
                      ..+..+++|++|+|.+..++.-. ...+.++++|++|++.++.-... ...-..+++|+.|+++++. +..+.    -..
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l  361 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFL  361 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence            34566788888888877654311 11245678888888887742111 0111244678888887664 33332    124


Q ss_pred             CCccEEEEcceeeEEeeCCCCCceEEEEeccc-CCc------------ccceec-----cccccCCCceEEEEEeeecce
Q 020558          234 PSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGH-GIG------------KGKVIG-----PIVNYFPQLKTLELHVELNEE  295 (324)
Q Consensus       234 p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~------------~~~~~~-----~l~~~~~~L~~L~l~~~~~~~  295 (324)
                      ++|+.|.+.+.... .+..+++|+++.+.... ...            ....+.     ..+..+++|+.|+++.+....
T Consensus       362 ~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  440 (844)
T 3j0a_A          362 EKLQTLDLRDNALT-TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS  440 (844)
T ss_dssp             CCCCEEEEETCCSC-CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred             CCCCEEECCCCCCC-cccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence            77777777766432 23346677777766511 100            000011     123478999999999886521


Q ss_pred             ecccCC-CCCCcceeEEEEecc
Q 020558          296 ILQFPE-CDLPELRHLMFMLVH  316 (324)
Q Consensus       296 ~~~~~~-~~~~~L~~L~l~~~~  316 (324)
                      ...... ..+++|++|.++.+.
T Consensus       441 ~~~~~~~~~~~~L~~L~Ls~N~  462 (844)
T 3j0a_A          441 CSGDQTPSENPSLEQLFLGENM  462 (844)
T ss_dssp             CCSSSSSCSCTTCCBCEEESCC
T ss_pred             cccccccccCCccccccCCCCc
Confidence            111111 457899999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=9.4e-05  Score=73.48  Aligned_cols=146  Identities=12%  Similarity=0.021  Sum_probs=89.6

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ec-------ccCCccEEEEecCCCcceEE--E--
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VG-------SLLQLKCLHIDHCNNLEELE--I--  231 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~-------~~~~L~~L~i~~c~~l~~l~--i--  231 (324)
                      ++|++|+|.++.++. .-..+...+++|++|++.++.-. .+..  ..       .+++|++|++++|. +..+.  +  
T Consensus       673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~  749 (876)
T 4ecn_A          673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRA  749 (876)
T ss_dssp             CCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGST
T ss_pred             CCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-CccchHHhhh
Confidence            367777777766551 11233457888888888876322 1110  00       11278889888875 44432  1  


Q ss_pred             -ecCCccEEEEcceee---EEeeCCCCCceEEEEeccc---CCcccceeccccccCCCceEEEEEeeecceecccCCCCC
Q 020558          232 -SCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGH---GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDL  304 (324)
Q Consensus       232 -~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~  304 (324)
                       ..|+|+.|.+.+...   +..+.++++|+.+++....   .+.....+..-+..+++|+.|.|+.+.+   ..+|...+
T Consensus       750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L---~~Ip~~l~  826 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI---RKVDEKLT  826 (876)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC---CBCCSCCC
T ss_pred             ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC---CccCHhhc
Confidence             357888888877643   3356688889998886411   1111112223356789999999988753   45565445


Q ss_pred             CcceeEEEEecc
Q 020558          305 PELRHLMFMLVH  316 (324)
Q Consensus       305 ~~L~~L~l~~~~  316 (324)
                      ++|++|+|+.++
T Consensus       827 ~~L~~LdLs~N~  838 (876)
T 4ecn_A          827 PQLYILDIADNP  838 (876)
T ss_dssp             SSSCEEECCSCT
T ss_pred             CCCCEEECCCCC
Confidence            799999997774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.34  E-value=6.8e-05  Score=72.52  Aligned_cols=36  Identities=17%  Similarity=0.100  Sum_probs=23.0

Q ss_pred             cccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558          277 VNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV  315 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~  315 (324)
                      +..+++|+.|+++.+.+   ...+.   ..+++|++|+++.+
T Consensus       476 ~~~l~~L~~L~Ls~N~l---~~i~~~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNI---ANINDDMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             TTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccCCCCCEEECCCCCC---CcCChhhhccccccCEEeCCCC
Confidence            45677777777776653   22222   56677888888665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.32  E-value=0.00029  Score=64.90  Aligned_cols=31  Identities=16%  Similarity=0.123  Sum_probs=13.0

Q ss_pred             CCccEEEEecCCCcceEEEecCCccEEEEcce
Q 020558          213 LQLKCLHIDHCNNLEELEISCPSLLSFKYFGP  244 (324)
Q Consensus       213 ~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~  244 (324)
                      ++|++|+++++. +..+.-..++|+.|.+.+.
T Consensus       277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N  307 (454)
T 1jl5_A          277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSN  307 (454)
T ss_dssp             TTCCEEECCSSC-CSEESCCCTTCCEEECCSS
T ss_pred             CcCCEEECcCCc-cCcccCcCCcCCEEECcCC
Confidence            445555555443 2222111245555554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.31  E-value=1.6e-06  Score=77.94  Aligned_cols=36  Identities=8%  Similarity=0.050  Sum_probs=22.3

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS  200 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  200 (324)
                      ++|++|+|+++.+++.++..+...+++|++|+|.+|
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            466666666666666655555555556666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.27  E-value=0.00014  Score=64.82  Aligned_cols=155  Identities=21%  Similarity=0.265  Sum_probs=93.1

Q ss_pred             CCCcEEEeeeEEeCH----HHHHHH---HHcCCccceeEeecCCC----c---c--eE-EEecccCCccEEEEecCCCcc
Q 020558          165 KSLRFLYFDTVNVTE----EILEFF---INNCPNLDDLRVGRSDN----L---L--RL-KVVGSLLQLKCLHIDHCNNLE  227 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~----~~l~~l---l~~cp~Le~L~l~~c~~----~---~--~l-~i~~~~~~L~~L~i~~c~~l~  227 (324)
                      +.++.|.+....+.+    ..+..|   +...|+|+.|.+.+...    +   .  .+ .+...+|.|++|.+.++..+.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            467777777554431    245555   34679999999965321    1   0  11 122456899999998874322


Q ss_pred             eEEEecCCccEEEEcceeeE------EeeCCCCCceEEEEecc---cCCcc-cceecccc--ccCCCceEEEEEeeecce
Q 020558          228 ELEISCPSLLSFKYFGPEIK------LHVKNVPQLVDVLIGGG---HGIGK-GKVIGPIV--NYFPQLKTLELHVELNEE  295 (324)
Q Consensus       228 ~l~i~~p~L~~L~~~~~~~~------~~~~~~~~L~~l~l~~~---~~~~~-~~~~~~l~--~~~~~L~~L~l~~~~~~~  295 (324)
                      --.+..|+|++|.+..+...      +....+|+|+.+.+...   +.... -..+..++  ..+|+|+.|.|+.+.+..
T Consensus       187 l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~  266 (362)
T 2ra8_A          187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN  266 (362)
T ss_dssp             CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred             eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence            11234799999999765432      12247899999998641   11111 11122333  358999999998776411


Q ss_pred             --ecccCC-CCCCcceeEEEEecchhhh
Q 020558          296 --ILQFPE-CDLPELRHLMFMLVHLIVA  320 (324)
Q Consensus       296 --~~~~~~-~~~~~L~~L~l~~~~~i~~  320 (324)
                        ...... +.+++|++|.|+.+ .|++
T Consensus       267 ~~~~~la~a~~~~~L~~LdLs~n-~L~d  293 (362)
T 2ra8_A          267 VVVEMFLESDILPQLETMDISAG-VLTD  293 (362)
T ss_dssp             HHHHHHHHCSSGGGCSEEECCSS-CCBH
T ss_pred             HHHHHHHhCccCCCCCEEECCCC-CCCh
Confidence              111111 67899999999654 5555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.27  E-value=0.00012  Score=69.89  Aligned_cols=131  Identities=15%  Similarity=0.161  Sum_probs=83.1

Q ss_pred             cCCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEEE--
Q 020558          156 KSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELEI--  231 (324)
Q Consensus       156 ~l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~i--  231 (324)
                      ++|..+.  +++++|+|++..++.=. ..-++++++|++|+|.+|. ++.+.-  -..+++|++|+++++. +..+..  
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~  119 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA  119 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGG
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHH
Confidence            4555432  47899999887654200 0114678999999999884 222211  1245789999998875 666543  


Q ss_pred             --ecCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          232 --SCPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       232 --~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                        ..++|+.|.+.+....    ..++++++|+.+++......  .......+..+++|+.|.++.+.+
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--SFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC--CCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc--cCCCchhhccchhhhhhcccCccc
Confidence              2378888888776432    24778889999888752211  111223456788999999887765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.25  E-value=8e-05  Score=58.49  Aligned_cols=107  Identities=14%  Similarity=0.224  Sum_probs=67.2

Q ss_pred             cCCccceeEeecCCCc-ceE-EEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEeccc
Q 020558          188 NCPNLDDLRVGRSDNL-LRL-KVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGH  265 (324)
Q Consensus       188 ~cp~Le~L~l~~c~~~-~~l-~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~  265 (324)
                      ..+.|++|++.+|.-. ..+ ..-..+++|+.|++.+|. +..+                  -.+..+++|+.+++....
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV------------------SNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC------------------SSCCCCSSCCEEEEESCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh------------------hhhccCCCCCEEECcCCc
Confidence            4478899999887522 121 111344677777777664 2221                  135678899999988622


Q ss_pred             CCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEecc
Q 020558          266 GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLVH  316 (324)
Q Consensus       266 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  316 (324)
                      ...   .+..+...+++|+.|.++.+.+..+..... ..+++|++|.++.+.
T Consensus        83 l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           83 IFG---GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             CCS---CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             Cch---HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            111   123445579999999999886522222233 788999999997763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.25  E-value=4.4e-05  Score=67.16  Aligned_cols=32  Identities=19%  Similarity=0.073  Sum_probs=21.2

Q ss_pred             CCceEEEEEeeecceecccC-C--CCCCcceeEEEEec
Q 020558          281 PQLKTLELHVELNEEILQFP-E--CDLPELRHLMFMLV  315 (324)
Q Consensus       281 ~~L~~L~l~~~~~~~~~~~~-~--~~~~~L~~L~l~~~  315 (324)
                      ++|+.|.++.+..   ...+ .  ..+++|++|.++.+
T Consensus       193 ~~L~~L~l~~n~i---~~~~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          193 ETLNELHLDHNKI---QAIELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             SSCSCCBCCSSCC---CCCCTTSSTTCTTCSCCBCCSS
T ss_pred             CCCCEEECCCCcC---CccCHHHhcCCCCCCEEECCCC
Confidence            5777777776654   2222 2  67788888888755

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.24  E-value=1.7e-05  Score=70.74  Aligned_cols=150  Identities=11%  Similarity=0.062  Sum_probs=95.5

Q ss_pred             CCCcEEEeeeEEeCHHH---HHHHHHc-CCccceeEeecCCCcc----eE--EEecccCCccEEEEecCCCcceEEE---
Q 020558          165 KSLRFLYFDTVNVTEEI---LEFFINN-CPNLDDLRVGRSDNLL----RL--KVVGSLLQLKCLHIDHCNNLEELEI---  231 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~---l~~ll~~-cp~Le~L~l~~c~~~~----~l--~i~~~~~~L~~L~i~~c~~l~~l~i---  231 (324)
                      ++|++|+|.++.+++..   +...+.. +++|++|++.+|.-..    .+  .+....++|++|++++|. +.....   
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l  187 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAEL  187 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHH
Confidence            79999999999977644   4444555 6799999999984221    11  011111499999999986 433221   


Q ss_pred             -----ec-CCccEEEEcceeeEE--------eeCC-CCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeecce
Q 020558          232 -----SC-PSLLSFKYFGPEIKL--------HVKN-VPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELNEE  295 (324)
Q Consensus       232 -----~~-p~L~~L~~~~~~~~~--------~~~~-~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  295 (324)
                           .. ++|+.|.+.+....-        .+.. .++|+.+++.... .......+..+...+++|+.|.++.+....
T Consensus       188 ~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~  267 (362)
T 3goz_A          188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN  267 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred             HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence                 22 599999998764210        1222 4699999998732 222223344667889999999999887321


Q ss_pred             e-----cccCC--CCCCcceeEEEEec
Q 020558          296 I-----LQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       296 ~-----~~~~~--~~~~~L~~L~l~~~  315 (324)
                      +     ..++.  +.+++|+.|+++..
T Consensus       268 i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          268 MSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             CCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             cCHHHHHHHHHHhccCCceEEEecCCC
Confidence            1     11122  56677777777544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.24  E-value=4.9e-05  Score=64.06  Aligned_cols=129  Identities=14%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecC
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCP  234 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p  234 (324)
                      .+..+++|++|+|.+..+++- ....+..+++|++|++.++.-.... ..-..+++|++|+++++. +..+.-    ..+
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  131 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLT  131 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCC
Confidence            356789999999988776541 1122467889999999887422110 111345789999998765 444432    247


Q ss_pred             CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      +|+.|.+.+....    -.+.++++|+.+++.......   .....+..+++|+.|.++.+.+
T Consensus       132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS---VPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSCCB
T ss_pred             cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc---cCHHHHhCCCCCCEEEeeCCce
Confidence            8999988876432    136678999999988622111   1113356789999999988775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.19  E-value=0.00019  Score=67.89  Aligned_cols=100  Identities=15%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE-----ecC
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI-----SCP  234 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i-----~~p  234 (324)
                      .+..+++|++|+|++..+++-. ...+.++++|++|++.++.- +.+.-. .+++|++|+++++. +..+.+     ..+
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~  146 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRL-QNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLT  146 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCC-CEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCT
T ss_pred             hhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcC-CccCcc-ccccCCEEECCCCC-ccccCchHhhcccC
Confidence            3556777777777766654210 11144567777777776642 222111 44677777776655 333221     236


Q ss_pred             CccEEEEcceeeE-EeeCCCCCc--eEEEEec
Q 020558          235 SLLSFKYFGPEIK-LHVKNVPQL--VDVLIGG  263 (324)
Q Consensus       235 ~L~~L~~~~~~~~-~~~~~~~~L--~~l~l~~  263 (324)
                      +|+.|.+.+.... ..+.++++|  +.+++..
T Consensus       147 ~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             TCCEEEEECSBCCTTTTGGGTTSCEEEEEEEE
T ss_pred             cccEEecCCCccccCchhhhhhceeeEEEeec
Confidence            6666666654321 123333444  5555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.18  E-value=0.00074  Score=59.16  Aligned_cols=32  Identities=3%  Similarity=0.137  Sum_probs=15.3

Q ss_pred             ccEEEEEEeCCCCCcchHHHHHHHHHhcCceEEEEEc
Q 020558           96 VNEFIIVFDLDDSHESNISHWVYTAISKRAQKFELNL  132 (324)
Q Consensus        96 l~~l~l~~~~~~~~~~~v~~wl~~~~~~~l~~L~l~~  132 (324)
                      ++.+.+.+....   ..+ +++... ..+++.|+++.
T Consensus        27 l~~L~l~g~i~~---~~~-~~l~~~-l~~L~~LdLs~   58 (329)
T 3sb4_A           27 ITHLTLTGKLNA---EDF-RHLRDE-FPSLKVLDISN   58 (329)
T ss_dssp             CSEEEEEEEECH---HHH-HHHHHS-CTTCCEEEEEE
T ss_pred             eeEEEEeccccH---HHH-HHHHHh-hccCeEEecCc
Confidence            667777654321   111 122211 34677777753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.18  E-value=9e-05  Score=60.41  Aligned_cols=123  Identities=16%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCcc
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLL  237 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  237 (324)
                      .++|++|+|.+..++.- ....+.++++|++|++.++.- +.+.  .-..+++|++|+++++. +..+.-    ..++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence            56788888888776521 122346788888888888632 2211  11245778888887764 333321    235666


Q ss_pred             EEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeee
Q 020558          238 SFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVEL  292 (324)
Q Consensus       238 ~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  292 (324)
                      .|.+.+....    -.+.++++|+.+++......   ......+..+++|+.|+++.+.
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK---SVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccc---eeCHHHhccCCCccEEEecCCC
Confidence            6666554321    12455667777766642111   0111224456777777776554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.16  E-value=0.00021  Score=56.62  Aligned_cols=123  Identities=14%  Similarity=0.146  Sum_probs=83.0

Q ss_pred             cCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEEEcceeeE-E---eeCCCCCceEEEE
Q 020558          188 NCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKYFGPEIK-L---HVKNVPQLVDVLI  261 (324)
Q Consensus       188 ~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~~~~~~~-~---~~~~~~~L~~l~l  261 (324)
                      .+++|++|.+.++.-...-.+....++|++|+++++. +..+. + ..++|+.|.+.+.... +   .+.++++|+.+++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            6889999999998432211222333599999999886 55552 1 3479999999877542 2   2467899999999


Q ss_pred             ecccCCcccceeccccccCCCceEEEEEeeecceecccCC------CCCCcceeEEEEecc
Q 020558          262 GGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE------CDLPELRHLMFMLVH  316 (324)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~  316 (324)
                      ........+.  ...+..+++|+.|.++.+...   ..|.      ..+++|+.|.++.+.
T Consensus        96 ~~N~i~~~~~--~~~l~~l~~L~~L~l~~N~i~---~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           96 TNNSLVELGD--LDPLASLKSLTYLCILRNPVT---NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSCCCCCGGG--GGGGGGCTTCCEEECCSSGGG---GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCcCCcchh--hHhhhcCCCCCEEEecCCCCC---CcHhHHHHHHHHCCccceeCCCcCC
Confidence            8622211111  123568999999999988752   2222      578899999887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.06  E-value=0.00012  Score=60.36  Aligned_cols=124  Identities=10%  Similarity=0.026  Sum_probs=62.7

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCcc
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLL  237 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  237 (324)
                      .+.+++|+|.+..++.-.-...+..+++|++|++.++.- +.+.  .-..+++|++|+++++. +..+.-    ..++|+
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  108 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLK  108 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCC
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCC
Confidence            345678887776654321112245678888888877642 2211  11234677777776654 232221    235556


Q ss_pred             EEEEcceeeE----EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeec
Q 020558          238 SFKYFGPEIK----LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       238 ~L~~~~~~~~----~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      .|.+.+....    -.+.++++|+.+++... ......    ..+..+++|+.|.++.+.+
T Consensus       109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP----GAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT----TTTTTCTTCCEEECCSCCE
T ss_pred             EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH----HHhcCCCCCCEEEecCcCC
Confidence            6655554321    13445666666666541 111111    2234566666666665554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.05  E-value=0.00045  Score=63.55  Aligned_cols=135  Identities=18%  Similarity=0.118  Sum_probs=64.2

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEEEc
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKYF  242 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~~  242 (324)
                      ++|++|++.+..+++  +.. +.++++|++|++.++.-. .  +.....+|++|+++++. +..+. + ..++|+.|.+.
T Consensus       131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~-~--lp~~~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLK-K--LPDLPPSLEFIAAGNNQ-LEELPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS-C--CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCc-c--cCCCcccccEEECcCCc-CCcCccccCCCCCCEEECC
Confidence            456666666555442  222 455666666666665321 1  12222466666666554 22221 1 23566666655


Q ss_pred             ceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEEEec
Q 020558          243 GPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFMLV  315 (324)
Q Consensus       243 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  315 (324)
                      +....-.-...++|+.+++.........    . +..+++|+.|+++.+..   ...| ..+++|++|.++.+
T Consensus       204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp----~-~~~l~~L~~L~l~~N~l---~~l~-~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          204 NNSLKKLPDLPLSLESIVAGNNILEELP----E-LQNLPFLTTIYADNNLL---KTLP-DLPPSLEALNVRDN  267 (454)
T ss_dssp             SSCCSSCCCCCTTCCEEECCSSCCSSCC----C-CTTCTTCCEEECCSSCC---SSCC-SCCTTCCEEECCSS
T ss_pred             CCcCCcCCCCcCcccEEECcCCcCCccc----c-cCCCCCCCEEECCCCcC---Cccc-ccccccCEEECCCC
Confidence            5432110112245666666542111111    1 34677888888876644   2222 22355666655443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.04  E-value=0.0022  Score=60.45  Aligned_cols=40  Identities=10%  Similarity=-0.010  Sum_probs=30.0

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHH--cCCccceeEeecCC
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFIN--NCPNLDDLRVGRSD  201 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~  201 (324)
                      ..+++|+.|.|.++.+++..+..+..  ..+.|++|++.+|.
T Consensus       246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  287 (562)
T 3a79_B          246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT  287 (562)
T ss_dssp             HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred             hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence            45678888888888888877665543  45689999998874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.04  E-value=0.001  Score=62.90  Aligned_cols=139  Identities=13%  Similarity=0.018  Sum_probs=78.8

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF  242 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~  242 (324)
                      .+++|++|+|.+..++.  +.. +  +.+|++|++.++.-..   +...+++|+.|+++++. +..+.-..++|+.|.+.
T Consensus        98 ~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~Ls~N~l~~---lp~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls  168 (571)
T 3cvr_A           98 LPASLEYLDACDNRLST--LPE-L--PASLKHLDVDNNQLTM---LPELPALLEYINADNNQ-LTMLPELPTSLEVLSVR  168 (571)
T ss_dssp             CCTTCCEEECCSSCCSC--CCC-C--CTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred             ccCCCCEEEccCCCCCC--cch-h--hcCCCEEECCCCcCCC---CCCcCccccEEeCCCCc-cCcCCCcCCCcCEEECC
Confidence            46778888877776543  222 2  2278888887764221   11145778888887765 44443345788888877


Q ss_pred             ceeeE-E-eeCCCCCceEEEEecccCCcccceec-cccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEecc
Q 020558          243 GPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIG-PIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       243 ~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~  316 (324)
                      +.... + .+.  ++|+.+++........+. +. .+....+.|+.|.|+.+.+   ..+|.  ..+++|++|+|+.+.
T Consensus       169 ~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l---~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          169 NNQLTFLPELP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRI---THIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             SSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCC---CCCCGGGGGSCTTEEEECCSSS
T ss_pred             CCCCCCcchhh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcc---eecCHHHhcCCCCCEEEeeCCc
Confidence            66421 1 022  778888877522111111 11 1112223338898887754   34565  558899999997664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.95  E-value=0.00013  Score=64.94  Aligned_cols=145  Identities=15%  Similarity=0.121  Sum_probs=80.0

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHH-cCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCc
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFIN-NCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSL  236 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L  236 (324)
                      .+.++.|+|++..++.-.- ..+. ++++|++|+|.++.- +.+.  .-..+++|++|+++++. +..+.-    ..++|
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  114 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL  114 (361)
T ss_dssp             CTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence            3457888888776543111 1123 678888888887632 2211  11244778888887765 454432    23778


Q ss_pred             cEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCc--c
Q 020558          237 LSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPE--L  307 (324)
Q Consensus       237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~--L  307 (324)
                      +.|.+.+....    ..+.++++|+.+++...........+..-+..+++|+.|+|+.+.+   ...+.   ..+++  |
T Consensus       115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~~~l  191 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPAWVK  191 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC---CCCCHHHHHHSCHHHH
T ss_pred             CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC---CccCHHHhhhccHhhc
Confidence            88887766432    2366788888888876221111111101114678889988887754   23332   33443  3


Q ss_pred             eeEEEEe
Q 020558          308 RHLMFML  314 (324)
Q Consensus       308 ~~L~l~~  314 (324)
                      +.|.|..
T Consensus       192 ~~l~l~~  198 (361)
T 2xot_A          192 NGLYLHN  198 (361)
T ss_dssp             TTEECCS
T ss_pred             ceEEecC
Confidence            6666644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.94  E-value=2.2e-05  Score=70.44  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=40.9

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHH---H-HcCCccceeEeecCCCcc-e-EEE---ecccCCccEEEEecCC
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFF---I-NNCPNLDDLRVGRSDNLL-R-LKV---VGSLLQLKCLHIDHCN  224 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~l---l-~~cp~Le~L~l~~c~~~~-~-l~i---~~~~~~L~~L~i~~c~  224 (324)
                      .+++|++|+|.++.+++.+...+   + ..++.|++|+|.+|.-.. . ..+   -..+++|++|+++++.
T Consensus       124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred             HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence            35688999999988888765544   3 357889999999885211 0 001   0234678888887765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=96.91  E-value=5.2e-05  Score=58.32  Aligned_cols=106  Identities=14%  Similarity=0.202  Sum_probs=66.2

Q ss_pred             cCCccceeEeecCCCc-ceE-EEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEeccc
Q 020558          188 NCPNLDDLRVGRSDNL-LRL-KVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGH  265 (324)
Q Consensus       188 ~cp~Le~L~l~~c~~~-~~l-~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~  265 (324)
                      ..++|++|++.+|.-. ..+ ..-..+++|+.|++++|. +..+                  -.+.++++|+.+++....
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI------------------ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC------------------TTCCCCTTCCEEECCSSC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc------------------hhhhcCCCCCEEECCCCc
Confidence            3477999999988532 121 122345677777777664 2221                  135678889988887622


Q ss_pred             CCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          266 GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       266 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      ...   .+......+++|+.|.++.+.......... ..+++|++|.++.+
T Consensus        76 i~~---~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           76 VSG---GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CCS---CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             ccc---hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            111   122344579999999999887522222123 78899999999776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.85  E-value=0.00025  Score=58.89  Aligned_cols=123  Identities=16%  Similarity=0.151  Sum_probs=63.9

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCcc
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLL  237 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  237 (324)
                      .++|++|+|.+..++.- ....+.++++|++|++.++.- +.+.  .-..+++|+.|+++++. +..+.-    ..++|+
T Consensus        39 ~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~  115 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLK  115 (229)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhC
Confidence            37888888888776531 112245678888888887642 2211  11244677888877664 333321    235566


Q ss_pred             EEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeee
Q 020558          238 SFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVEL  292 (324)
Q Consensus       238 ~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  292 (324)
                      .|.+.+....   -.+.++++|+.+++.......   .....+..+++|+.|.+..+.
T Consensus       116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS---IPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECTTSC
T ss_pred             eEeccCCcccccCcccccCCCCCEEECCCCcCCc---cCHHHHhCCCCCCEEEeeCCC
Confidence            6655544321   123455566665555411110   011223455666666665544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.80  E-value=0.00022  Score=58.84  Aligned_cols=122  Identities=11%  Similarity=0.035  Sum_probs=60.3

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE--EEecccCCccEEEEecCCCcceEEE----ecCCccE
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL--KVVGSLLQLKCLHIDHCNNLEELEI----SCPSLLS  238 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~  238 (324)
                      ++|++|+|.+..++.-. ...+..+++|++|++.++.-. .+  ..-..+++|++|+++++. +..+.-    ..++|+.
T Consensus        32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence            57778877776654210 012455677788877776421 11  111234667777776654 333221    2355555


Q ss_pred             EEEcceeeE----EeeCCCCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeec
Q 020558          239 FKYFGPEIK----LHVKNVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       239 L~~~~~~~~----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      |.+.+....    -.+.++++|+.+++.... ....    ...+..+++|+.|.++.+.+
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA----KGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC----HHHHhCCCCCCEEEeCCCCc
Confidence            555544321    124455666666665411 1111    12234556666666655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.79  E-value=0.00062  Score=64.43  Aligned_cols=113  Identities=15%  Similarity=0.000  Sum_probs=65.5

Q ss_pred             CCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEccee
Q 020558          166 SLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPE  245 (324)
Q Consensus       166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~  245 (324)
                      +|++|+|.+..++.  +..   .+++|+.|++.++.-..   +....++|++|+++++. +..+.--.++|+.|.+.+..
T Consensus       121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~---lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~  191 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM---LPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL  191 (571)
T ss_dssp             TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc---CCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC
Confidence            78888888877654  222   57888888888774221   22244788888888775 33322122788888887764


Q ss_pred             eE-Ee-eCCCCCc-------eEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          246 IK-LH-VKNVPQL-------VDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       246 ~~-~~-~~~~~~L-------~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      .. +. +.+  +|       +.+++........+.   . +..+++|+.|.|+.+.+
T Consensus       192 L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~---~-l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          192 LESLPAVPV--RNHHSEETEIFFRCRENRITHIPE---N-ILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CSSCCCCC----------CCEEEECCSSCCCCCCG---G-GGGSCTTEEEECCSSSC
T ss_pred             CCchhhHHH--hhhcccccceEEecCCCcceecCH---H-HhcCCCCCEEEeeCCcC
Confidence            32 10 111  45       777666522111111   1 22478888888887765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.78  E-value=0.003  Score=55.82  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=17.2

Q ss_pred             cccCCCceEEEEEeeecceecccCCCCCCcceeEEE
Q 020558          277 VNYFPQLKTLELHVELNEEILQFPECDLPELRHLMF  312 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  312 (324)
                      +..+++|+.|+++.+.+   ..+|...|.+|++|.+
T Consensus       198 f~~l~~L~~LdLs~N~l---~~lp~~~~~~L~~L~~  230 (350)
T 4ay9_X          198 FHGASGPVILDISRTRI---HSLPSYGLENLKKLRA  230 (350)
T ss_dssp             TTTEECCSEEECTTSCC---CCCCSSSCTTCCEEEC
T ss_pred             hccCcccchhhcCCCCc---CccChhhhccchHhhh
Confidence            45667777777766543   2333333444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.73  E-value=0.0015  Score=53.69  Aligned_cols=118  Identities=13%  Similarity=0.160  Sum_probs=79.7

Q ss_pred             CccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCccEEEEcceeeE----EeeCCCCCceEE
Q 020558          190 PNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEIK----LHVKNVPQLVDV  259 (324)
Q Consensus       190 p~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l  259 (324)
                      +.|++|++.+..- +.+.  .-..+++|+.|+++++. +..+.-    ..++|+.|.+.+....    -.+.++++|+.+
T Consensus        32 ~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence            6899999998742 2221  11345799999999876 555421    3389999999877542    135678999999


Q ss_pred             EEeccc-CCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEecc
Q 020558          260 LIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLVH  316 (324)
Q Consensus       260 ~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~  316 (324)
                      ++.... ....    ...+..+++|+.|.|+.+.+   ...+.   ..+++|++|.|+..+
T Consensus       110 ~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          110 LLNANKINCLR----VDAFQDLHNLNLLSLYDNKL---QTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             ECCSSCCCCCC----TTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCCCCEeC----HHHcCCCCCCCEEECCCCcC---CEECHHHHhCCCCCCEEEeCCCC
Confidence            998622 2211    13356889999999998865   22222   678899999986553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.72  E-value=6e-06  Score=67.08  Aligned_cols=62  Identities=23%  Similarity=0.182  Sum_probs=40.1

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCC
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~  224 (324)
                      .+..+++|++|+|.+..+++  +. -+..+++|++|++.++.-...-.....+++|++|+++++.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence            34568899999999988765  33 3667889999999887311100111223567777777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.59  E-value=0.0012  Score=54.57  Aligned_cols=120  Identities=17%  Similarity=0.111  Sum_probs=81.6

Q ss_pred             CCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecCCccEEEEcceeeE----EeeCCCCCceEE
Q 020558          189 CPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEIK----LHVKNVPQLVDV  259 (324)
Q Consensus       189 cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l  259 (324)
                      .++|++|++.++.-.... ..-..+++|++|+++++. +..+..    ..++|+.|.+.+....    ..+..+++|+.+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            389999999997532210 111345899999999876 555532    3489999999887542    135688999999


Q ss_pred             EEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEecc
Q 020558          260 LIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLVH  316 (324)
Q Consensus       260 ~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~  316 (324)
                      ++.........    .-+..+++|+.|.++.+.+   ...+.   ..+++|++|.+...+
T Consensus       118 ~Ls~N~l~~lp----~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          118 FMCCNKLTELP----RGIERLTHLTHLALDQNQL---KSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSSCCCSCC----TTGGGCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eccCCcccccC----cccccCCCCCEEECCCCcC---CccCHHHHhCCCCCCEEEeeCCC
Confidence            99862222111    2236889999999998864   33332   678899999986543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.32  E-value=0.001  Score=63.28  Aligned_cols=148  Identities=11%  Similarity=0.058  Sum_probs=79.8

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE----EecCC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE----ISCPS  235 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~  235 (324)
                      +..+++|+.+.+.........-.....++++|+.+++.++.-.... ......+.|+.|.++++.....+.    -..++
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~  495 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  495 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence            3445556666555443211111111334555666655554211100 111234678888887665333222    12378


Q ss_pred             ccEEEEcceeeE----EeeCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCC--CCC-Ccc
Q 020558          236 LLSFKYFGPEIK----LHVKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDL-PEL  307 (324)
Q Consensus       236 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~-~~L  307 (324)
                      |+.|.+.+....    -.+.++++|+.+++... .....    ...+..+++|+.|+|+.+.+ . ...|.  ..+ .+|
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~l-~-~~~~~~l~~l~~~L  569 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHI-M-TSKKQELQHFPSSL  569 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC----CGGGTTCTTCCEEECTTSCC-C-BCCSSCTTCCCTTC
T ss_pred             cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC----hhHHhCCCCCCEEECCCCcC-C-CCCHHHHHhhhCcC
Confidence            888888876432    23677888998888752 11111    12346788999999987764 1 12222  334 588


Q ss_pred             eeEEEEe
Q 020558          308 RHLMFML  314 (324)
Q Consensus       308 ~~L~l~~  314 (324)
                      ++|.|+.
T Consensus       570 ~~L~L~~  576 (635)
T 4g8a_A          570 AFLNLTQ  576 (635)
T ss_dssp             CEEECTT
T ss_pred             CEEEeeC
Confidence            9988854

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.25  E-value=0.0038  Score=55.09  Aligned_cols=78  Identities=17%  Similarity=0.217  Sum_probs=39.8

Q ss_pred             CCCcEEEeeeEEeCHHHHH-HHHHcCCccceeEeecCCCcceEEEe--cccCCccEEEEecCCCcceEE----EecCCcc
Q 020558          165 KSLRFLYFDTVNVTEEILE-FFINNCPNLDDLRVGRSDNLLRLKVV--GSLLQLKCLHIDHCNNLEELE----ISCPSLL  237 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~i~~c~~l~~l~----i~~p~L~  237 (324)
                      +++++|+|.+..++.  +. ..++++++|++|+|.++.-.+.+...  ..++++.++.+..+.++..+.    -..++|+
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            567777777665431  11 11345677777777776543332111  123455555555454454442    1236666


Q ss_pred             EEEEcce
Q 020558          238 SFKYFGP  244 (324)
Q Consensus       238 ~L~~~~~  244 (324)
                      .|.+.+.
T Consensus       108 ~L~l~~n  114 (350)
T 4ay9_X          108 YLLISNT  114 (350)
T ss_dssp             EEEEEEE
T ss_pred             ccccccc
Confidence            6666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.19  E-value=0.001  Score=53.96  Aligned_cols=121  Identities=17%  Similarity=0.194  Sum_probs=79.6

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE----ecCC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI----SCPS  235 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~  235 (324)
                      +..+++|++|+|.+..++.- ....+..+++|++|++.++.-.... ..-..+++|++|+++++. +..+.-    ..++
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  125 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQ  125 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCc
Confidence            46789999999998776521 1223567899999999987422111 111345799999998765 444322    3489


Q ss_pred             ccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          236 LLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       236 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      |+.|.+.+....    ..+.++++|+.+++...          .+...+++|+.|.+..+..
T Consensus       126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N----------~~~~~~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN----------PWDCTCPGIRYLSEWINKH  177 (208)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC----------CBCCCTTTTHHHHHHHHHC
T ss_pred             CCEEECCCCccceeCHHHhccCCCccEEEecCC----------CeecCCCCHHHHHHHHHhC
Confidence            999998876432    13567899999988742          1123677888877765543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.17  E-value=0.0077  Score=54.35  Aligned_cols=36  Identities=6%  Similarity=-0.011  Sum_probs=18.6

Q ss_pred             cccCCCceEEEEEeeecceecccCCCCCCcceeEEEEe
Q 020558          277 VNYFPQLKTLELHVELNEEILQFPECDLPELRHLMFML  314 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  314 (324)
                      +.+|++|+.+.|...-. .+..-....+ +|+.|.+..
T Consensus       319 F~~c~~L~~l~lp~~l~-~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          319 LGGNRKVTQLTIPANVT-QINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             TTTCCSCCEEEECTTCC-EECTTSSSSS-CCCEEEECC
T ss_pred             hcCCCCccEEEECcccc-EEcHHhCCCC-CCCEEEEcC
Confidence            34667777777743321 2222111344 777777754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.98  E-value=0.0007  Score=64.10  Aligned_cols=145  Identities=16%  Similarity=0.160  Sum_probs=88.8

Q ss_pred             CCCCCCCcEEE-eeeEE--------eCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-
Q 020558          161 LSRVKSLRFLY-FDTVN--------VTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-  230 (324)
Q Consensus       161 ~~~~~~L~~L~-L~~~~--------~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-  230 (324)
                      +..+++|+.|+ +....        +.++.+..+-  ...|+.|++.++.-...-. -..+++|+.|+++++. +..+. 
T Consensus       405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~  480 (567)
T 1dce_A          405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPP  480 (567)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCG
T ss_pred             HHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccch
Confidence            34577788877 33221        2223343332  2368999999874222112 3456799999999875 44331 


Q ss_pred             --EecCCccEEEEcceee---EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccC-C--C
Q 020558          231 --ISCPSLLSFKYFGPEI---KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFP-E--C  302 (324)
Q Consensus       231 --i~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-~--~  302 (324)
                        -..++|+.|.+.+...   + .++++++|+.+++........  .....+..+++|+.|.|+.+.+....... .  .
T Consensus       481 ~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~  557 (567)
T 1dce_A          481 ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS--AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE  557 (567)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS--STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred             hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC--CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence              1448999999887643   3 578899999999986221111  00133568999999999988752221111 1  4


Q ss_pred             CCCcceeEEE
Q 020558          303 DLPELRHLMF  312 (324)
Q Consensus       303 ~~~~L~~L~l  312 (324)
                      .+++|+.|.+
T Consensus       558 ~lp~L~~L~l  567 (567)
T 1dce_A          558 MLPSVSSILT  567 (567)
T ss_dssp             HCTTCSEEEC
T ss_pred             HCcccCccCC
Confidence            5889998853

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.81  E-value=0.00036  Score=55.89  Aligned_cols=118  Identities=12%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             CCCCCCcEEEeeeE-EeCHHHHHHH---HHcCCccceeEeecCCCcc----eE-EEecccCCccEEEEecCCCcceEEEe
Q 020558          162 SRVKSLRFLYFDTV-NVTEEILEFF---INNCPNLDDLRVGRSDNLL----RL-KVVGSLLQLKCLHIDHCNNLEELEIS  232 (324)
Q Consensus       162 ~~~~~L~~L~L~~~-~~~~~~l~~l---l~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~i~~c~~l~~l~i~  232 (324)
                      ...+.|++|+|.++ .+++++...+   +..++.|++|+|.+|.--.    .+ ..-...++|++|+++++. +..    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~----  107 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG----  107 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH----
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH----
Confidence            45788999999998 8888765544   5578889999998875211    00 001123567777776654 111    


Q ss_pred             cCCccEEEEccee-eEEeeCCCCCceEEEE--ec-ccCCcccceeccccccCCCceEEEEEeeec
Q 020558          233 CPSLLSFKYFGPE-IKLHVKNVPQLVDVLI--GG-GHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       233 ~p~L~~L~~~~~~-~~~~~~~~~~L~~l~l--~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                               .|.. ..-.+...+.|+++++  .. .....-...+.+.+...+.|+.|+|+.+.+
T Consensus       108 ---------~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          108 ---------SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             ---------HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             ---------HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                     0000 0012334556666666  32 111111122445555667777777766554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.74  E-value=0.009  Score=52.92  Aligned_cols=119  Identities=22%  Similarity=0.233  Sum_probs=79.7

Q ss_pred             CCccceeEeecCCCcceEEEe--c-ccCCccEEEEecCCCcceEEE----ecCCccEEEEcceeeE-E---eeCCCCCce
Q 020558          189 CPNLDDLRVGRSDNLLRLKVV--G-SLLQLKCLHIDHCNNLEELEI----SCPSLLSFKYFGPEIK-L---HVKNVPQLV  257 (324)
Q Consensus       189 cp~Le~L~l~~c~~~~~l~i~--~-~~~~L~~L~i~~c~~l~~l~i----~~p~L~~L~~~~~~~~-~---~~~~~~~L~  257 (324)
                      .+.++.|+|.+.. ++.+...  . .+++|+.|+++++. +..+.-    ..++|+.|.+.+.... +   .+.++++|+
T Consensus        38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            3568999999874 2322111  1 56899999999875 555542    3489999999887542 2   367889999


Q ss_pred             EEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC------CCCCcceeEEEEec
Q 020558          258 DVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE------CDLPELRHLMFMLV  315 (324)
Q Consensus       258 ~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~  315 (324)
                      .+++......   ......+..+++|+.|.|+.+.+   ..+|.      ..+++|++|.|+..
T Consensus       116 ~L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          116 VLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI---SRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             EEECCSSCCC---EECTTTTTTCTTCCEEECCSSCC---CSCCGGGTC----CTTCCEEECCSS
T ss_pred             EEECCCCccc---EECHHHhCCcccCCEEECCCCcC---CeeCHHHhcCcccCCcCCEEECCCC
Confidence            9999862211   11123356889999999998865   33333      35789999999765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.69  E-value=0.0036  Score=51.36  Aligned_cols=101  Identities=14%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE----EecCC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE----ISCPS  235 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~  235 (324)
                      +..+++|++|+|.+..++.-. ...+.++++|++|++.++.-.... ..-..+++|++|+++++. +..+.    ...++
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~  130 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSS  130 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTT
T ss_pred             hccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCcc
Confidence            567899999999987765311 112567899999999987432211 112345899999998775 33331    13489


Q ss_pred             ccEEEEcceeeE----EeeCCCCCceEEEEec
Q 020558          236 LLSFKYFGPEIK----LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       236 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~  263 (324)
                      |+.|.+.+....    -.+.++++|+.+++..
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            999999877432    2467899999999987

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=95.46  E-value=9.8e-05  Score=59.79  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=63.3

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFK  240 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~  240 (324)
                      +..+++|++|++.++.++.  +...+..+|+|++|++.++.- +.+.--..+++|++|+++++. +..+.          
T Consensus        66 ~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~l~~N~-i~~~~----------  131 (198)
T 1ds9_A           66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI-ASLSGIEKLVNLRVLYMSNNK-ITNWG----------  131 (198)
T ss_dssp             HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC-CCHHHHHHHHHSSEEEESEEE-CCCHH----------
T ss_pred             cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC-CcCCccccCCCCCEEECCCCc-CCchh----------
Confidence            4578999999999999873  445566679999999998732 111111233566666665543 11100          


Q ss_pred             EcceeeEEeeCCCCCceEEEEecc-cCCcc------cceeccccccCCCceEEE
Q 020558          241 YFGPEIKLHVKNVPQLVDVLIGGG-HGIGK------GKVIGPIVNYFPQLKTLE  287 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~------~~~~~~l~~~~~~L~~L~  287 (324)
                           ..-.+.++++|+.+++... .....      ......++..+++|+.|+
T Consensus       132 -----~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          132 -----EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -----HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             -----HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence                 0013566778888887751 11100      111224466888888875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=95.41  E-value=0.0033  Score=50.38  Aligned_cols=61  Identities=10%  Similarity=0.041  Sum_probs=36.0

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCC
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~  224 (324)
                      +++|++|+|.+..++.-.-...+...++|++|++.++.-.... ..-...++|++|++++..
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            3488888888877653211123567788888888877422110 111234677777777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.35  E-value=0.005  Score=49.40  Aligned_cols=59  Identities=15%  Similarity=0.118  Sum_probs=37.2

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCC
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~  224 (324)
                      +++|++|+|.+..++.  +..-+.++++|++|++.++.-.... ..-..+++|++|++++..
T Consensus        30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4689999998887652  2233677889999999887422110 001234677777776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.07  E-value=0.017  Score=46.18  Aligned_cols=35  Identities=11%  Similarity=0.176  Sum_probs=17.0

Q ss_pred             CccceeEeecCCCcceEEEecccCCccEEEEecCC
Q 020558          190 PNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       190 p~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~  224 (324)
                      ++|++|++.+..-...-..-..+++|+.|+++++.
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~   65 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR   65 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc
Confidence            46777777765321100111233566666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.01  E-value=0.012  Score=55.69  Aligned_cols=124  Identities=16%  Similarity=0.076  Sum_probs=80.0

Q ss_pred             HHHHcCCccceeEeecCCCcceE--------EEe-cccCCccEEEEecCCCcceEE-E-ecCCccEEEEcceee---EEe
Q 020558          184 FFINNCPNLDDLRVGRSDNLLRL--------KVV-GSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKYFGPEI---KLH  249 (324)
Q Consensus       184 ~ll~~cp~Le~L~l~~c~~~~~l--------~i~-~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~~~~~~---~~~  249 (324)
                      ..+..+++|+.|+...+.....+        .+. .....|+.|+++++. +..+. + ..++|+.|.+.+...   +-.
T Consensus       403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~  481 (567)
T 1dce_A          403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPA  481 (567)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGG
T ss_pred             HHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchh
Confidence            34567788888883222111000        010 012468999998875 44332 2 347999999988754   235


Q ss_pred             eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc--CC--CCCCcceeEEEEecc
Q 020558          250 VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF--PE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       250 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~--~~~~~L~~L~l~~~~  316 (324)
                      ++++++|+.+++........+     -+..+++|+.|.|+.+.+   ...  |.  ..+++|++|.|+...
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~lp-----~l~~l~~L~~L~Ls~N~l---~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          482 LAALRCLEVLQASDNALENVD-----GVANLPRLQELLLCNNRL---QQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-----GGTTCSSCCEEECCSSCC---CSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             hhcCCCCCEEECCCCCCCCCc-----ccCCCCCCcEEECCCCCC---CCCCCcHHHhcCCCCCEEEecCCc
Confidence            778999999999862221111     356899999999998864   333  55  789999999997653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.91  E-value=0.0061  Score=59.47  Aligned_cols=105  Identities=15%  Similarity=0.011  Sum_probs=46.2

Q ss_pred             HHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEeccc
Q 020558          186 INNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGH  265 (324)
Q Consensus       186 l~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~  265 (324)
                      +..++.|+.|+|.++.-...-.-...++.|++|.++++. +..+                 +-.+.++++|+.+++....
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~l-----------------p~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTEL-----------------PAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCC-----------------CGGGGGGTTCCEEECTTSC
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Cccc-----------------ChhhhCCCCCCEEeCcCCc
Confidence            455666777777665422100001123555555555543 2211                 1123445555555555411


Q ss_pred             CCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcceeEEEEec
Q 020558          266 GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       266 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      .....    .-+..+++|+.|.|+.+.+   ..+|.  ..+++|++|.|+..
T Consensus       282 l~~lp----~~~~~l~~L~~L~L~~N~l---~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          282 LTSLP----AELGSCFQLKYFYFFDNMV---TTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CSSCC----SSGGGGTTCSEEECCSSCC---CCCCSSTTSCTTCCCEECTTS
T ss_pred             CCccC----hhhcCCCCCCEEECCCCCC---CccChhhhcCCCccEEeCCCC
Confidence            11111    1123556666666665543   23343  45556666666443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.86  E-value=0.033  Score=48.45  Aligned_cols=124  Identities=10%  Similarity=0.046  Sum_probs=66.7

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEEEecCCccEEEEc
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYF  242 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~  242 (324)
                      .+++.+.+.+. +....+..+...|++|++|++.++. ++.+.-  -..|.+|++|.+.+-  +..|.            
T Consensus       202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~------------  265 (329)
T 3sb4_A          202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIG------------  265 (329)
T ss_dssp             GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEEC------------
T ss_pred             cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceeh------------
Confidence            44455555553 5566677766778889888888653 222111  023445555555321  12111            


Q ss_pred             ceeeEEeeCCCCCce-EEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEE
Q 020558          243 GPEIKLHVKNVPQLV-DVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMF  312 (324)
Q Consensus       243 ~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  312 (324)
                          ...+.+|++|+ ++.+.........++    +.+|++|+.|.+..+....+..-....+++|++|+.
T Consensus       266 ----~~aF~~~~~L~~~l~l~~~l~~I~~~a----F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          266 ----QRVFSNCGRLAGTLELPASVTAIEFGA----FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ----TTTTTTCTTCCEEEEECTTCCEECTTT----TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ----HHHhhCChhccEEEEEcccceEEchhh----hhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence                12366778887 777764221222223    458888888888655432222211156677777653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.83  E-value=0.00082  Score=53.76  Aligned_cols=123  Identities=12%  Similarity=0.040  Sum_probs=74.0

Q ss_pred             HHHHHHHHHcCCccceeEeecCCCcceE------EEecccCCccEEEEecCCCcceEEEecCCccEEEEccee-eEEeeC
Q 020558          179 EEILEFFINNCPNLDDLRVGRSDNLLRL------KVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPE-IKLHVK  251 (324)
Q Consensus       179 ~~~l~~ll~~cp~Le~L~l~~c~~~~~l------~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~-~~~~~~  251 (324)
                      .+.+..++..++.|++|+|.+|..++.-      ..-..+++|++|++++|. +..-             |.. ..-.+.
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~-------------g~~~l~~~L~   90 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDP-------------VAFALAEMLK   90 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHH-------------HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChH-------------HHHHHHHHHH
Confidence            3568888999999999999998333221      111234678888888765 2110             000 000133


Q ss_pred             CCCCceEEEEeccc-CCcccceeccccccCCCceEEEE--Eeeecceecc---cCC--CCCCcceeEEEEecc
Q 020558          252 NVPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLEL--HVELNEEILQ---FPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       252 ~~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l--~~~~~~~~~~---~~~--~~~~~L~~L~l~~~~  316 (324)
                      ..+.|+++++.... ...-...+.+.+...+.|+.|+|  +.+.+ ....   +..  ...++|++|.|+.+.
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL-GNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC-CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            45677777777522 21112234556778899999999  66655 2211   122  567899999997663

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.71  E-value=0.022  Score=44.60  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=18.5

Q ss_pred             CccceeEeecCCCcceEE--EecccCCccEEEEecCC
Q 020558          190 PNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       190 p~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~  224 (324)
                      +.|++|++.++.-. .+.  .-..+++|++|+++++.
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~   63 (177)
T 2o6r_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQ   63 (177)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCc
Confidence            57788888776421 111  11234567777776553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.67  E-value=0.0054  Score=48.23  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=59.0

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEEecCCccEEEE
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKY  241 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~  241 (324)
                      +++|++|+|.+..++.- ....+..+++|++|++.++.- +.+.  .-..+++|+.|+++++. +..+.           
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~-l~~~~-----------   92 (177)
T 2o6r_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK-LQSLP-----------   92 (177)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred             CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCC-ccccC-----------
Confidence            47899999998776531 112346789999999998742 2211  11234677777776653 22111           


Q ss_pred             cceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          242 FGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       242 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                           +-.+.++++|+.+++......   ......+..+++|+.|+++.+.+
T Consensus        93 -----~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           93 -----NGVFDKLTQLKELALDTNQLK---SVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             -----TTTTTTCTTCCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             -----HHHhhCCcccCEEECcCCcce---EeCHHHhcCCcccCEEEecCCCe
Confidence                 012345566666666541111   11112234567777777766654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=94.45  E-value=0.026  Score=45.05  Aligned_cols=35  Identities=14%  Similarity=0.100  Sum_probs=18.5

Q ss_pred             CccceeEeecCCCcceE--EEecccCCccEEEEecCC
Q 020558          190 PNLDDLRVGRSDNLLRL--KVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       190 p~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~i~~c~  224 (324)
                      +.|++|.+.+..-....  .+-...++|++|+++++.
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~   65 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC
Confidence            36777777776321111  112234667777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.11  E-value=0.063  Score=48.31  Aligned_cols=76  Identities=8%  Similarity=-0.008  Sum_probs=39.6

Q ss_pred             CCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCC-Cccee
Q 020558          234 PSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDL-PELRH  309 (324)
Q Consensus       234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~  309 (324)
                      ++|+.+.+......   ..+.+|++|+.+.+.........++    +.+| +|+.+.+..+....+.......+ .+++.
T Consensus       300 ~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~a----F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~  374 (401)
T 4fdw_A          300 PKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSA----FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV  374 (401)
T ss_dssp             TTCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECTTS----SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred             ccCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcHHh----CCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence            45555555432221   2355677777777743221122223    4577 99999998775311111111333 36778


Q ss_pred             EEEEe
Q 020558          310 LMFML  314 (324)
Q Consensus       310 L~l~~  314 (324)
                      |++-.
T Consensus       375 l~vp~  379 (401)
T 4fdw_A          375 IRVPA  379 (401)
T ss_dssp             EEECG
T ss_pred             EEeCH
Confidence            87744

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.10  E-value=0.026  Score=50.51  Aligned_cols=36  Identities=11%  Similarity=0.042  Sum_probs=20.2

Q ss_pred             ccCCCceEEEEEeeecceecccCCCCCCcceeEEEEe
Q 020558          278 NYFPQLKTLELHVELNEEILQFPECDLPELRHLMFML  314 (324)
Q Consensus       278 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  314 (324)
                      .+|.+|+.+.+...-. .+.......|.+|+.+++..
T Consensus       340 ~~c~~L~~i~lp~~l~-~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          340 RGCTSLSNINFPLSLR-KIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTCTTCCEECCCTTCC-EECTTTBTTCTTCCEEEEEG
T ss_pred             cCCCCCCEEEECcccc-EehHHHhhCCCCCCEEEECC
Confidence            4677777777643321 22222225667788877743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=93.74  E-value=0.0057  Score=59.63  Aligned_cols=101  Identities=19%  Similarity=0.191  Sum_probs=55.4

Q ss_pred             CCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE---EecC
Q 020558          159 CGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE---ISCP  234 (324)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~---i~~p  234 (324)
                      ..+..+++|+.|+|.+..+..  +..-+..+++|++|+|.++.-. .+ .--..+++|+.|+++++. +..+.   -..+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~  293 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF  293 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred             hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence            345678999999999887652  2211337899999999988432 21 101345788888888765 33221   1224


Q ss_pred             CccEEEEcceee---EEeeCCCCCceEEEEec
Q 020558          235 SLLSFKYFGPEI---KLHVKNVPQLVDVLIGG  263 (324)
Q Consensus       235 ~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~  263 (324)
                      +|+.|.+.+...   +-.++++++|+.+++..
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence            555555544422   11244445555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=92.32  E-value=0.11  Score=40.44  Aligned_cols=60  Identities=17%  Similarity=0.220  Sum_probs=28.3

Q ss_pred             eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558          250 VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV  315 (324)
Q Consensus       250 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~  315 (324)
                      +.++++|+.+++......   ......+..+++|+.|.|+.+.+   ...+.   ..+++|++|.|+..
T Consensus        50 ~~~l~~L~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQLT---VLPAGVFDKLTQLTQLSLNDNQL---KSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS
T ss_pred             hcCcccCCEEECCCCCcC---ccChhhccCCCCCCEEECCCCcc---CEeCHHHhcCCCCCCEEEeCCC
Confidence            445566666666541111   11112234566666666665543   22222   45556666666443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=92.24  E-value=0.11  Score=40.54  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=16.8

Q ss_pred             ccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEe
Q 020558          278 NYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFML  314 (324)
Q Consensus       278 ~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~  314 (324)
                      ..+++|+.|.|+.+.+   ..++.   ..+++|++|.|+.
T Consensus        78 ~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHL---KSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             TTCTTCCEEECCSSCC---CCCCTTTTTTCTTCSEEECCS
T ss_pred             CCcchhhEEECCCCcc---ceeCHHHhccccCCCEEEeCC
Confidence            4555666666655543   12222   3455556555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=87.98  E-value=0.078  Score=41.50  Aligned_cols=59  Identities=19%  Similarity=0.232  Sum_probs=34.7

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCC
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~  224 (324)
                      .++|++|+|.+..++.- ....+.++++|++|+|.+.. ++.+.  +-..+++|+.|++++..
T Consensus        32 ~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc
Confidence            37888888888776431 11225567888888888763 22211  11234667777766543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.58  E-value=0.5  Score=42.01  Aligned_cols=73  Identities=14%  Similarity=-0.000  Sum_probs=35.8

Q ss_pred             CCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeE
Q 020558          234 PSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHL  310 (324)
Q Consensus       234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  310 (324)
                      .+|+++.+......   ..+.+|.+|+++.|.......-.++|    .+|++|+.+++..... . .. ....+.+|+.+
T Consensus       311 ~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~~~-~-~~-~~~~~~~L~~i  383 (394)
T 4gt6_A          311 ISLKSIDIPEGITQILDDAFAGCEQLERIAIPSSVTKIPESAF----SNCTALNNIEYSGSRS-Q-WN-AISTDSGLQNL  383 (394)
T ss_dssp             TTCCEEECCTTCCEECTTTTTTCTTCCEEEECTTCCBCCGGGG----TTCTTCCEEEESSCHH-H-HH-TCBCCCCC---
T ss_pred             CCcCEEEeCCcccEehHhHhhCCCCCCEEEECcccCEEhHhHh----hCCCCCCEEEECCcee-e-hh-hhhccCCCCEE
Confidence            45555554332221   24667888888887532222223333    5788888888875542 1 11 11456677777


Q ss_pred             EEE
Q 020558          311 MFM  313 (324)
Q Consensus       311 ~l~  313 (324)
                      .+.
T Consensus       384 ~i~  386 (394)
T 4gt6_A          384 PVA  386 (394)
T ss_dssp             ---
T ss_pred             EeC
Confidence            663

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=86.56  E-value=1.3  Score=39.38  Aligned_cols=72  Identities=15%  Similarity=0.128  Sum_probs=40.6

Q ss_pred             cCCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCccee
Q 020558          233 CPSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRH  309 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  309 (324)
                      +.+|+++.+......   ..+.+|.+|+++.+.........++    +.+|++|+.+++..... .+ ......|.+||.
T Consensus       319 c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~lp~~~~-~~-~~~F~~c~~L~~  392 (394)
T 4fs7_A          319 CTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGANA----FQGCINLKKVELPKRLE-QY-RYDFEDTTKFKW  392 (394)
T ss_dssp             CTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTT----BTTCTTCCEEEEEGGGG-GG-GGGBCTTCEEEE
T ss_pred             CCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccccEehHHH----hhCCCCCCEEEECCCCE-Eh-hheecCCCCCcE
Confidence            356666666433222   2466788888877753211122223    46999999999975432 22 211156677776


Q ss_pred             E
Q 020558          310 L  310 (324)
Q Consensus       310 L  310 (324)
                      +
T Consensus       393 I  393 (394)
T 4fs7_A          393 I  393 (394)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=83.46  E-value=0.22  Score=38.69  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEE--EecccCCccEEEEecCCCcceEEE----ecCCccE
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLK--VVGSLLQLKCLHIDHCNNLEELEI----SCPSLLS  238 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~  238 (324)
                      ++|++|+|.+..++.-. ...+.++++|++|+|.+..- +.+.  +-..+++|++|++++.. +..+.-    ..++|+.
T Consensus        30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence            45555555555443210 11133455555555555421 1110  01233555566555443 332221    2356666


Q ss_pred             EEEcce
Q 020558          239 FKYFGP  244 (324)
Q Consensus       239 L~~~~~  244 (324)
                      |.+.+.
T Consensus       107 L~L~~N  112 (170)
T 3g39_A          107 IWLLNN  112 (170)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=82.55  E-value=1.2  Score=39.43  Aligned_cols=78  Identities=13%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             cCCccEEEEcceeeE---EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCccee
Q 020558          233 CPSLLSFKYFGPEIK---LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRH  309 (324)
Q Consensus       233 ~p~L~~L~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  309 (324)
                      +++|+.+.+......   ..+.+|.+|+++.|.........++    +.+|.+|+.+.|-..-. .+..-....|.+|+.
T Consensus       287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~-~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVT-KIPESAFSNCTALNN  361 (394)
T ss_dssp             CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCC-BCCGGGGTTCTTCCE
T ss_pred             ccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccC-EEhHhHhhCCCCCCE
Confidence            355666655433222   2456777777777653221122233    35888888888843321 222211267788888


Q ss_pred             EEEEec
Q 020558          310 LMFMLV  315 (324)
Q Consensus       310 L~l~~~  315 (324)
                      +.+...
T Consensus       362 i~~~~~  367 (394)
T 4gt6_A          362 IEYSGS  367 (394)
T ss_dssp             EEESSC
T ss_pred             EEECCc
Confidence            887543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=81.86  E-value=1.2  Score=39.14  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=27.8

Q ss_pred             eCCCCCceEEEEecc-cCCcccceeccccccCCCceEEEEEeeecceecccCCCCCCcceeEEE
Q 020558          250 VKNVPQLVDVLIGGG-HGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPECDLPELRHLMF  312 (324)
Q Consensus       250 ~~~~~~L~~l~l~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  312 (324)
                      +.+|++|+++.+... ......++    +.+|.+|+.++|...-. .+.......|.+|+.+.+
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~l~-~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTALK-TIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTTCC-EECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccccccceehhhh----hcCCCCCCEEEcCcccc-EEHHHHhhCCCCCCEEEE
Confidence            456677777666531 11112222    34667777776643211 222211145556666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=81.79  E-value=0.27  Score=41.49  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=18.8

Q ss_pred             CCCCcEEEeeeEEeCH-HHHHHHHHcCCccceeEeec
Q 020558          164 VKSLRFLYFDTVNVTE-EILEFFINNCPNLDDLRVGR  199 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~  199 (324)
                      +|+|++|+|++..+++ ..+..++..+|+|+.|+|.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  205 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC
Confidence            5556666666555443 12333444556666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	7e-04

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 9/44 (20%), Positives = 23/44 (52%)

Query: 14 KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLWTYASNL 57
          +D ++ LP +I + I + L  ++   +  +S  W  +   +++L
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 14 KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL 50
          +D++S LP ++ + ++S L  K+  + +     W+ L
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 7e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 18 SRLPDDILVNIISRLTLKEAARTSVLSSRWKYL 50
            LPD++L+ I S L L E  + S +  RW  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.23
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.16
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.07
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.83
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.8
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.33
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.08
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.08
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.52
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.5
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.17
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.89
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.39
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.2
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.03
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.76
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	95.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	95.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	94.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.87
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	91.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	88.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	81.32

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2e-13  Score=116.63  Aligned_cols=152  Identities=17%  Similarity=0.256  Sum_probs=78.4

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE---EEecccCCccEEEEecCCCcce------EEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL---KVVGSLLQLKCLHIDHCNNLEE------LEI  231 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~i~~c~~l~~------l~i  231 (324)
                      +.+|++|++|+|.++.+++..+.. ++.||+|++|++.+|.+++..   .+...+++|++|++++|..+..      +.-
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~  145 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  145 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc
Confidence            345666666666666666665555 345666677766666655431   1233456677777766664321      111


Q ss_pred             ecCCccEEEEcceeeE-------EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CC
Q 020558          232 SCPSLLSFKYFGPEIK-------LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CD  303 (324)
Q Consensus       232 ~~p~L~~L~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~  303 (324)
                      .+++|+.|.+.|+...       ....+||+|+++++.... ...+..+.. +..+++||.|.++.+.......+.. ..
T Consensus       146 ~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~-~itd~~~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-MLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-TCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             cccccchhhhccccccccccccccccccccccccccccccc-CCCchhhhh-hcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            2466777766654210       123456667766665311 111122222 3356677777776543101111111 45


Q ss_pred             CCcceeEEEEec
Q 020558          304 LPELRHLMFMLV  315 (324)
Q Consensus       304 ~~~L~~L~l~~~  315 (324)
                      +++|++|++..+
T Consensus       224 ~~~L~~L~l~~~  235 (284)
T d2astb2         224 IPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeeeCC
Confidence            666777766544

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.9e-12  Score=73.12  Aligned_cols=35  Identities=37%  Similarity=0.551  Sum_probs=32.9

Q ss_pred             CCCCChHHHHHHHhcCChhHHHHhhhcccchhhcc
Q 020558           17 VSRLPDDILVNIISRLTLKEAARTSVLSSRWKYLW   51 (324)
Q Consensus        17 ~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~lw   51 (324)
                      ++.||+||+.+||+||+.+|++++++|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3e-12  Score=109.15  Aligned_cols=129  Identities=17%  Similarity=0.215  Sum_probs=85.3

Q ss_pred             CCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCCCcceEE----EecccCCccEEEEecCCC-cc-----eE
Q 020558          161 LSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSDNLLRLK----VVGSLLQLKCLHIDHCNN-LE-----EL  229 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~----i~~~~~~L~~L~i~~c~~-l~-----~l  229 (324)
                      +..+++|++|+|+++. +++.++..++.+||+||+|++.+|..++.-.    +...++.|++|.+.+|.. +.     .+
T Consensus        91 l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l  170 (284)
T d2astb2          91 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL  170 (284)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccc
Confidence            4467888888888875 8888888888888888888888887664311    223357888888887642 22     23


Q ss_pred             EEecCCccEEEEccee-e---E-EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEee
Q 020558          230 EISCPSLLSFKYFGPE-I---K-LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVE  291 (324)
Q Consensus       230 ~i~~p~L~~L~~~~~~-~---~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  291 (324)
                      .-++|+|+.|.+.++. .   . ..+.++++|+.+++.... ...+..+.. +..+|+|+.|++..+
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~-~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCC-CCChHHHHH-HhcCCCCCEEeeeCC
Confidence            3356888888887652 1   1 245678888888887511 122223323 356788888888654

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.9e-10  Score=78.61  Aligned_cols=37  Identities=24%  Similarity=0.538  Sum_probs=35.6

Q ss_pred             cccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558           14 KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL   50 (324)
Q Consensus        14 ~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l   50 (324)
                      .|.|+.||+||+.+||+||+.+|++++++|||+|+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999975

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=3e-10  Score=80.47  Aligned_cols=37  Identities=22%  Similarity=0.491  Sum_probs=35.1

Q ss_pred             cccCCCCChHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558           14 KDWVSRLPDDILVNIISRLTLKEAARTSVLSSRWKYL   50 (324)
Q Consensus        14 ~d~~s~LPd~vl~~Ils~L~~~d~~r~s~vsk~W~~l   50 (324)
                      .|.|+.||+||+.+||+||+.+|++++++|||+|+++
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~   39 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI   39 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.3e-08  Score=74.05  Aligned_cols=37  Identities=30%  Similarity=0.591  Sum_probs=34.3

Q ss_pred             cccCCCCC----hHHHHHHHhcCChhHHHHhhhcccchhhc
Q 020558           14 KDWVSRLP----DDILVNIISRLTLKEAARTSVLSSRWKYL   50 (324)
Q Consensus        14 ~d~~s~LP----d~vl~~Ils~L~~~d~~r~s~vsk~W~~l   50 (324)
                      .|.++.||    |||+.+|||||+.+|++++++|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58899999    59999999999999999999999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.33  E-value=7.2e-08  Score=77.53  Aligned_cols=141  Identities=17%  Similarity=0.216  Sum_probs=97.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE--EecCCccE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE--ISCPSLLS  238 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~  238 (324)
                      +..|++|++|+|++..+++  +.. ++.+++|++|++.++. ++.+.--..+++|+.|.+.++.. ..+.  ...++++.
T Consensus        64 l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~~-~~~~~l~~l~~l~~  138 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLES  138 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCE
T ss_pred             HhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccc-ccccccccccccccccccccccc-cccccccccccccc
Confidence            4568999999999988764  222 4678999999999874 33322223468999999988763 2221  13478888


Q ss_pred             EEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEe
Q 020558          239 FKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFML  314 (324)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~  314 (324)
                      +.+.+....  ....++++|+.+.+.......    +. -+..+++|+.|+++.+.+   ...+. ..+++|++|+|+.
T Consensus       139 l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~----i~-~l~~l~~L~~L~Ls~N~i---~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISD----IV-PLAGLTKLQNLYLSKNHI---SDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCC----CG-GGTTCTTCCEEECCSSCC---CBCGGGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccc----cc-cccCCCCCCEEECCCCCC---CCChhhcCCCCCCEEEccC
Confidence            887765432  235568899998887622111    11 156899999999998764   33444 7889999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.20  E-value=1.7e-07  Score=74.61  Aligned_cols=138  Identities=12%  Similarity=0.151  Sum_probs=91.9

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE-ecCCccEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI-SCPSLLSF  239 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~L  239 (324)
                      +..|++|++|+|++..+++  +.. +.++++|++|.+.++..... ..-..++.|+.|.++++.....-.+ ..++|+.|
T Consensus        58 l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  133 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  133 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cccCCCcCcCccccccccC--ccc-ccCCcccccccccccccccc-cccccccccccccccccccccccccchhhhhHHh
Confidence            4568999999999988764  222 67899999999998854322 1123568999999988764221112 34888888


Q ss_pred             EEcceeeE-E-eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeE
Q 020558          240 KYFGPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHL  310 (324)
Q Consensus       240 ~~~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L  310 (324)
                      .+.+.... + .+..+++|+.+.+........     .-+.++++|+.|+++.+.+   ...+. ..+++|++|
T Consensus       134 ~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l-----~~l~~l~~L~~L~ls~N~i---~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDL-----KPLANLTTLERLDISSNKV---SDISVLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-----GGGTTCTTCCEEECCSSCC---CCCGGGGGCTTCSEE
T ss_pred             hhhhhhhcccccccccccccccccccccccCC-----ccccCCCCCCEEECCCCCC---CCCccccCCCCCCcC
Confidence            88776432 2 366788888888875221111     1146889999999987754   33343 667777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.08  E-value=2.5e-07  Score=73.60  Aligned_cols=144  Identities=13%  Similarity=0.209  Sum_probs=101.0

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEE
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFK  240 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~  240 (324)
                      .++++++|++.+..+++  +.. ++.+++|++|++.++. ++.+.--..+++|++|.+.++.. ..+. + ..++|+.+.
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~~-l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQI-ADITPLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCC--ccc-cccCCCcCcCcccccc-ccCcccccCCccccccccccccc-cccccccccccccccc
Confidence            36899999999887754  222 5789999999999984 33322124568999999998763 3222 2 448999999


Q ss_pred             EcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEecch
Q 020558          241 YFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLVHL  317 (324)
Q Consensus       241 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~  317 (324)
                      +.+....  -.+.++++|+.+++.......    + .-+..+++++.|.+..+..   ...+. ..+++|++|+++.+ +
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~-~~l~~~~~L~~L~l~~n~l---~~l~~l~~l~~L~~L~ls~N-~  183 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISD----I-SALSGLTSLQQLNFSSNQV---TDLKPLANLTTLERLDISSN-K  183 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCC----C-GGGTTCTTCSEEECCSSCC---CCCGGGTTCTTCCEEECCSS-C
T ss_pred             ccccccccccccchhhhhHHhhhhhhhhcc----c-ccccccccccccccccccc---cCCccccCCCCCCEEECCCC-C
Confidence            8776442  246788999999987522111    1 2256899999999987753   33444 78899999999887 4


Q ss_pred             hhh
Q 020558          318 IVA  320 (324)
Q Consensus       318 i~~  320 (324)
                      |++
T Consensus       184 i~~  186 (199)
T d2omxa2         184 VSD  186 (199)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.08  E-value=1.4e-06  Score=70.51  Aligned_cols=74  Identities=11%  Similarity=0.110  Sum_probs=42.3

Q ss_pred             ecCCccEEEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcce
Q 020558          232 SCPSLLSFKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELR  308 (324)
Q Consensus       232 ~~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~  308 (324)
                      .+++|+.|.+.+....  ..+.++++|+++++.......    + ..+..+++|+.|+|+.+.+   ..++. ..+++|+
T Consensus       149 ~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~----l-~~l~~l~~L~~L~Ls~N~l---t~i~~l~~l~~L~  220 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD----I-SPLASLPNLIEVHLKNNQI---SDVSPLANTSNLF  220 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC----C-GGGGGCTTCCEEECTTSCC---CBCGGGTTCTTCC
T ss_pred             cccccccccccccccccchhhcccccceecccCCCccCC----C-hhhcCCCCCCEEECcCCcC---CCCcccccCCCCC
Confidence            3466777766655321  235667777777776421111    1 1145677777777776643   23333 6677777


Q ss_pred             eEEEE
Q 020558          309 HLMFM  313 (324)
Q Consensus       309 ~L~l~  313 (324)
                      .|.|+
T Consensus       221 ~L~ls  225 (227)
T d1h6ua2         221 IVTLT  225 (227)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            77775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5e-06  Score=68.87  Aligned_cols=142  Identities=18%  Similarity=0.180  Sum_probs=70.0

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceE---EEecCCccEEEE
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEEL---EISCPSLLSFKY  241 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l---~i~~p~L~~L~~  241 (324)
                      +++++|+|.+..++.-. ...+.++++|++|+|.++ .++.+......++|++|+++++. +..+   .-..++|+.|.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhccccccccccccc-ccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            45666666665543200 011345666666666665 23333333445666666666543 2111   112245555554


Q ss_pred             cceeeE----Ee------------------------eCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          242 FGPEIK----LH------------------------VKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       242 ~~~~~~----~~------------------------~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      .+....    ..                        +..+++++.+++......   ....+.+..+++|+.|+|+.+.+
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS---CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhccccccccc---ccCccccccccccceeecccCCC
Confidence            433210    11                        233445555544431111   11123345778888888887653


Q ss_pred             ceecccCC--CCCCcceeEEEEec
Q 020558          294 EEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       294 ~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                         ..+|.  ..+++|++|.|+..
T Consensus       185 ---~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         185 ---YTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             ---CCCCTTTTTTCCCSEEECCSC
T ss_pred             ---cccChhHCCCCCCCEEEecCC
Confidence               34555  55677888888643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.3e-06  Score=66.89  Aligned_cols=129  Identities=14%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEE
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKY  241 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~  241 (324)
                      ..+..|++|+|++..|+.  +..+...+++|+.|++.++. ++.+.--..+++|++|+++++. +..+.-          
T Consensus        15 ~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~----------   80 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGE----------   80 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECS----------
T ss_pred             cCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCc----------
Confidence            355678888888877653  23345667888888888863 3333222345677777777665 333311          


Q ss_pred             cceeeEEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceeccc-CC--CCCCcceeEEE
Q 020558          242 FGPEIKLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQF-PE--CDLPELRHLMF  312 (324)
Q Consensus       242 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~--~~~~~L~~L~l  312 (324)
                            ..+..+++|+.+++.......... + ..++.+++|+.|.++.+...+.... +.  ..+|+|+.|.-
T Consensus        81 ------~~~~~l~~L~~L~L~~N~i~~~~~-l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          81 ------GLDQALPDLTELILTNNSLVELGD-L-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ------CHHHHCTTCCEEECCSCCCCCGGG-G-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ------cccccccccccceecccccccccc-c-cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence                  012345566666555421111110 1 1245677777777776653211111 11  45667776653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.4e-06  Score=64.53  Aligned_cols=107  Identities=14%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             cCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCCCCceEEEEecccCC
Q 020558          188 NCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNVPQLVDVLIGGGHGI  267 (324)
Q Consensus       188 ~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~  267 (324)
                      ++..|++|+|.++.-..--.+...+++|++|+++++. +..++                  .+..+++|+.+++......
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~------------------~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLD------------------GFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEEC------------------CCCCCSSCCEEECCSSCCC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCC-CCccC------------------CcccCcchhhhhccccccc
Confidence            5677888888887421111222345677777777654 33221                  2456788888888752211


Q ss_pred             cccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEecc
Q 020558          268 GKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLVH  316 (324)
Q Consensus       268 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  316 (324)
                      ..   ...+...+++|+.|.++.+.+.....+.. ..+++|++|.++.++
T Consensus        77 ~l---~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          77 RI---GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             EE---CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             CC---CccccccccccccceeccccccccccccccccccccchhhcCCCc
Confidence            11   12335689999999999887633333333 789999999998763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.60  E-value=3.5e-06  Score=67.28  Aligned_cols=142  Identities=19%  Similarity=0.269  Sum_probs=97.3

Q ss_pred             CCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccEEEE
Q 020558          164 VKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLSFKY  241 (324)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~L~~  241 (324)
                      +.+|++|++.++.+++  +.. +..+++|++|++.++. ++.+.-...+++|+.|.+.++. +..+. + ..|+|+.+.+
T Consensus        45 L~~L~~L~l~~~~i~~--l~~-l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCC--chh-HhhCCCCCEEeCCCcc-ccCccccccCcccccccccccc-cccccccccccccccccc
Confidence            5789999999887654  222 5789999999999984 2222212456899999999875 44432 2 2489999998


Q ss_pred             cceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEecchh
Q 020558          242 FGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLVHLI  318 (324)
Q Consensus       242 ~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~i  318 (324)
                      .+....  -.+.+++.++.+++......  +.   .....+++|+.+.++.+..   ...+. ..+++|++|.++.+ +|
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~--~~---~~~~~l~~L~~l~l~~n~l---~~i~~l~~l~~L~~L~Ls~N-~i  190 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNKIT--DI---TVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLYLSKN-HI  190 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCC--CC---GGGGGCTTCSEEECCSSCC---CCCGGGTTCTTCCEEECCSS-CC
T ss_pred             cccccccccccccccccccccccccccc--cc---ccccccccccccccccccc---cccccccCCCCCCEEECCCC-CC
Confidence            876432  13667888888887752211  11   2245789999999987754   33333 77899999999776 44


Q ss_pred             h
Q 020558          319 V  319 (324)
Q Consensus       319 ~  319 (324)
                      +
T Consensus       191 ~  191 (210)
T d1h6ta2         191 S  191 (210)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6e-06  Score=68.38  Aligned_cols=125  Identities=15%  Similarity=0.035  Sum_probs=67.7

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE----EecCCc
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE----ISCPSL  236 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L  236 (324)
                      ..+++|++|+|++..+...  ...+.+.++|+.|++.++...... .......+++.|.+.++. +..+.    ...+++
T Consensus        74 ~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKL  150 (266)
T ss_dssp             SCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccc
Confidence            3455566666555544321  112344556666666554322110 111233556666665543 33322    134788


Q ss_pred             cEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeec
Q 020558          237 LSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       237 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      +.+.+.+....    -.+..+++|+.+++....-......    +..+++|+.|.|+.+.+
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~----~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCB
T ss_pred             hhcccccccccccCccccccccccceeecccCCCcccChh----HCCCCCCCEEEecCCCC
Confidence            88888776432    1367789999999986221111111    12578999999998765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.52  E-value=1.1e-05  Score=65.04  Aligned_cols=147  Identities=15%  Similarity=0.164  Sum_probs=98.9

Q ss_pred             CCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEE-ecCCccE
Q 020558          160 GLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEI-SCPSLLS  238 (324)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~  238 (324)
                      ++..+++|++|++.+..+++  +.. +..+++|+.|.+.++... .+.--..+++|+.+.+.+|.......+ ..+.+..
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~--~~~-l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  133 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV  133 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCE
T ss_pred             hHhcCCCCcEeecCCceeec--ccc-cccccccccccccccccc-ccccccccccccccccccccccccchhccccchhh
Confidence            46689999999999887654  112 678999999999987532 222123568899999987763221111 3367777


Q ss_pred             EEEcceeeE--EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC-CCCCcceeEEEEec
Q 020558          239 FKYFGPEIK--LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE-CDLPELRHLMFMLV  315 (324)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  315 (324)
                      +.+.+....  ..+.++++|+.+.+........     .-+.++++|+.|+++.+..   ...+. ..+++|++|+|+.+
T Consensus       134 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~Ls~n~l---~~l~~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLTTLKADDNKI---SDISPLASLPNLIEVHLKNN  205 (227)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSCC---CCCGGGGGCTTCCEEECTTS
T ss_pred             hhchhhhhchhhhhccccccccccccccccccc-----hhhcccccceecccCCCcc---CCChhhcCCCCCCEEECcCC
Confidence            776655332  2456789999998875221111     1146889999999988754   33444 78899999999887


Q ss_pred             chhh
Q 020558          316 HLIV  319 (324)
Q Consensus       316 ~~i~  319 (324)
                       +|+
T Consensus       206 -~lt  208 (227)
T d1h6ua2         206 -QIS  208 (227)
T ss_dssp             -CCC
T ss_pred             -cCC
Confidence             454

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.50  E-value=1.7e-05  Score=66.72  Aligned_cols=96  Identities=18%  Similarity=0.202  Sum_probs=50.3

Q ss_pred             CCccEEEEecCCCcceEEEe-cCCccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEE
Q 020558          213 LQLKCLHIDHCNNLEELEIS-CPSLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLE  287 (324)
Q Consensus       213 ~~L~~L~i~~c~~l~~l~i~-~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~  287 (324)
                      ++|+.+.+.++. +..+... .++|+.|.+.+....    ..+.+++.++.+.+......   ......+.++++|+.|+
T Consensus       150 ~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~---~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         150 KKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS---AVDNGSLANTPHLRELH  225 (305)
T ss_dssp             TTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC---EECTTTGGGSTTCCEEE
T ss_pred             cccCccccccCC-ccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccc---ccccccccccccceeee
Confidence            456666666554 2222222 367777776654321    23556666666666541111   11112345677777777


Q ss_pred             EEeeecceecccCC--CCCCcceeEEEEec
Q 020558          288 LHVELNEEILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       288 l~~~~~~~~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      |+.+.+   ...|.  ..+++|++|+|+..
T Consensus       226 L~~N~L---~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         226 LNNNKL---VKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             CCSSCC---SSCCTTTTTCSSCCEEECCSS
T ss_pred             cccccc---cccccccccccCCCEEECCCC
Confidence            776643   23333  55677777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.17  E-value=4.4e-05  Score=65.98  Aligned_cols=141  Identities=13%  Similarity=0.189  Sum_probs=77.0

Q ss_pred             CCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCC----------------
Q 020558          162 SRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNN----------------  225 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~----------------  225 (324)
                      ..+++|++|++.+..+++  +. -+..+++|++|.+.++.-. .+.-...+++|++|.++++.-                
T Consensus       216 ~~~~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~  291 (384)
T d2omza2         216 GILTNLDELSLNGNQLKD--IG-TLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE  291 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccCCCCEEECCCCCCCC--cc-hhhcccccchhccccCccC-CCCcccccccCCEeeccCcccCCCCcccccccccccc
Confidence            456788888888877654  22 1567888888888876422 111123456777777765431                


Q ss_pred             -----cceEE--EecCCccEEEEcceeeE-E-eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeeccee
Q 020558          226 -----LEELE--ISCPSLLSFKYFGPEIK-L-HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEI  296 (324)
Q Consensus       226 -----l~~l~--i~~p~L~~L~~~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  296 (324)
                           +..+.  ...++++.|.+.+.... + .+..+++|+++++......  .  +. -+..+++|+.|+++.+.+   
T Consensus       292 ~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~--~--l~-~l~~l~~L~~L~l~~N~l---  363 (384)
T d2omza2         292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS--D--VS-SLANLTNINWLSAGHNQI---  363 (384)
T ss_dssp             CCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC--C--CG-GGGGCTTCCEEECCSSCC---
T ss_pred             ccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCC--C--Ch-hHcCCCCCCEEECCCCcC---
Confidence                 11110  12245555555544321 1 2456677777777642111  1  11 145677777777776543   


Q ss_pred             cccCC-CCCCcceeEEEEe
Q 020558          297 LQFPE-CDLPELRHLMFML  314 (324)
Q Consensus       297 ~~~~~-~~~~~L~~L~l~~  314 (324)
                      ...+. ..+++|+.|+|+.
T Consensus       364 ~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         364 SDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             CBCGGGTTCTTCSEEECCC
T ss_pred             CCChhhccCCCCCEeeCCC
Confidence            22232 5667777777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.92  E-value=9.1e-05  Score=63.89  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=89.8

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE-E-ecCCccE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE-I-SCPSLLS  238 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~-i-~~p~L~~  238 (324)
                      ...+++++.+.+.+..+++-  .. ...+++|++|++.++.- +.+..-..+++|+.|.+.++. +..+. + ..|+|+.
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~--~~-~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~  267 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDI--TP-LGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTE  267 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--GG-GGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSE
T ss_pred             cccccccceeeccCCccCCC--Cc-ccccCCCCEEECCCCCC-CCcchhhcccccchhccccCc-cCCCCcccccccCCE
Confidence            45689999999998776542  11 45789999999998842 222222356899999999876 33321 1 3478888


Q ss_pred             EEEcceeeE--EeeCCCCCceEEEEecc-cCCc--------------ccceecc--ccccCCCceEEEEEeeecceeccc
Q 020558          239 FKYFGPEIK--LHVKNVPQLVDVLIGGG-HGIG--------------KGKVIGP--IVNYFPQLKTLELHVELNEEILQF  299 (324)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~l~~~-~~~~--------------~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~  299 (324)
                      |.+.+....  ..+.+++.++.+.+... ....              ....+.+  -+..+++|+.|+++.+..   ...
T Consensus       268 L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l---~~l  344 (384)
T d2omza2         268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV---SDV  344 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCC---CCC
T ss_pred             eeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCC---CCC
Confidence            887654321  12333444444443320 0000              0001111  156889999999987754   233


Q ss_pred             CC-CCCCcceeEEEEecchhh
Q 020558          300 PE-CDLPELRHLMFMLVHLIV  319 (324)
Q Consensus       300 ~~-~~~~~L~~L~l~~~~~i~  319 (324)
                      +. ..+++|++|+++.+ +|+
T Consensus       345 ~~l~~l~~L~~L~l~~N-~l~  364 (384)
T d2omza2         345 SSLANLTNINWLSAGHN-QIS  364 (384)
T ss_dssp             GGGGGCTTCCEEECCSS-CCC
T ss_pred             hhHcCCCCCCEEECCCC-cCC
Confidence            34 67889999999765 444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.89  E-value=1.9e-06  Score=68.34  Aligned_cols=98  Identities=21%  Similarity=0.298  Sum_probs=57.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEE--EecCCcc
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELE--ISCPSLL  237 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~  237 (324)
                      +..+++|++|+|++..+++  +.. +.++++|++|++.++. ++.+ .+....++|+.|.+.++. +..+.  ...++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHSS
T ss_pred             HhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-ccccccccccccccccccccccc-cccccccccccccc
Confidence            4568999999999998864  222 5678999999999873 2211 111223567888877653 33321  1225566


Q ss_pred             EEEEcceeeE----E-eeCCCCCceEEEEec
Q 020558          238 SFKYFGPEIK----L-HVKNVPQLVDVLIGG  263 (324)
Q Consensus       238 ~L~~~~~~~~----~-~~~~~~~L~~l~l~~  263 (324)
                      .|.+.+....    + .+.++++|+.+++.+
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             ccccccchhccccccccccCCCccceeecCC
Confidence            6665554321    0 244555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.00029  Score=50.68  Aligned_cols=118  Identities=21%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             cEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEEecCCccEEEEcceee
Q 020558          168 RFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEI  246 (324)
Q Consensus       168 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~  246 (324)
                      |.|+|++..+++  +.. +..++.|++|++.+.. ++.+ ..-..+++|+.|++++.. +..+                 
T Consensus         1 R~L~Ls~n~l~~--l~~-l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~-i~~l-----------------   58 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENV-----------------   58 (124)
T ss_dssp             SEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCC-----------------
T ss_pred             CEEEcCCCCCCC--Ccc-cccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccc-cccc-----------------
Confidence            345555555442  222 4566777777777653 1211 001234556666655433 1111                 


Q ss_pred             EEeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeE
Q 020558          247 KLHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHL  310 (324)
Q Consensus       247 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L  310 (324)
                      + .++++++|+.+++.......... + +.+..+++|+.|+++.+........+.   ..+|+|++|
T Consensus        59 ~-~~~~l~~L~~L~l~~N~i~~~~~-~-~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          59 D-GVANLPRLQELLLCNNRLQQSAA-I-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSST-T-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             C-ccccccccCeEECCCCccCCCCC-c-hhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            0 25678888888887622111110 1 224678899999998876533333333   567777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.57  E-value=2.2e-05  Score=67.36  Aligned_cols=40  Identities=13%  Similarity=0.146  Sum_probs=28.9

Q ss_pred             CCCCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecCC
Q 020558          162 SRVKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRSD  201 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~  201 (324)
                      ..+++|++|+|.++.+++.+   +...+..++.|++|.+.+|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            45678888888888776653   44446678888888888774

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00036  Score=57.69  Aligned_cols=123  Identities=18%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             HHcCCccceeEeecCCCcce-EEEecccCCccEEEEecCCCcceEE---E-ecCCccEEEEcceeeE----EeeCCCCCc
Q 020558          186 INNCPNLDDLRVGRSDNLLR-LKVVGSLLQLKCLHIDHCNNLEELE---I-SCPSLLSFKYFGPEIK----LHVKNVPQL  256 (324)
Q Consensus       186 l~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~i~~c~~l~~l~---i-~~p~L~~L~~~~~~~~----~~~~~~~~L  256 (324)
                      ++++++|++|++.++..... .........|+.+.+.+.. +..+.   + ..++|+.|.+.+....    -.+.++++|
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            34556666666666532111 0111233556666665433 33332   1 2366777777665432    135567777


Q ss_pred             eEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC---CCCCcceeEEEEec
Q 020558          257 VDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFMLV  315 (324)
Q Consensus       257 ~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~  315 (324)
                      +.+.+......   ......+..+++|+.|+++.+..   ...+.   ..+++|++|.|+..
T Consensus       180 ~~l~l~~N~l~---~i~~~~f~~l~~L~~L~l~~N~i---~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         180 DRLLLHQNRVA---HVHPHAFRDLGRLMTLYLFANNL---SALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCC---SCCCHHHHTTCTTCCEEECCSS
T ss_pred             chhhhhhcccc---ccChhHhhhhhhccccccccccc---ccccccccccccccCEEEecCC
Confidence            77776641111   11123356778888888887754   22332   67788888888653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0057  Score=48.66  Aligned_cols=64  Identities=25%  Similarity=0.347  Sum_probs=33.1

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEe--cccCCccEEEEecCC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVV--GSLLQLKCLHIDHCN  224 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~i~~c~  224 (324)
                      +.++++|++|+|.+..+.+..=...+.+++.+++|.+..+.........  ..++.|++|.+.++.
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh
Confidence            4567777777776654321000001234667777776666544432211  234677777776543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.41  E-value=0.00016  Score=52.15  Aligned_cols=106  Identities=15%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEE
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFK  240 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~  240 (324)
                      +..+++|++|++++..++.  +..-+..+++|+.|++.+.. ++.+.--..+++|++|.+++.. +..+.          
T Consensus        16 l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~-i~~~~----------   81 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNR-LQQSA----------   81 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CCSSS----------
T ss_pred             cccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc-ccccCccccccccCeEECCCCc-cCCCC----------
Confidence            5678999999999988753  32226789999999999863 2222111344667777766543 11110          


Q ss_pred             EcceeeEEeeCCCCCceEEEEec-ccCCcccceeccccccCCCceEE
Q 020558          241 YFGPEIKLHVKNVPQLVDVLIGG-GHGIGKGKVIGPIVNYFPQLKTL  286 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~l~~~~~~L~~L  286 (324)
                           ....+..+++|+.+++.+ ..... ......+...+|+|+.|
T Consensus        82 -----~~~~l~~~~~L~~L~l~~N~i~~~-~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          82 -----AIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -----TTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEE
T ss_pred             -----CchhhcCCCCCCEEECCCCcCCcC-ccHHHHHHHHCcCcceE
Confidence                 001345677888887776 22111 11123445667777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0036  Score=49.92  Aligned_cols=86  Identities=17%  Similarity=0.242  Sum_probs=59.6

Q ss_pred             cCCCCCCCCCCCcEEEeeeEEeCHHHHH-HHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEE--
Q 020558          156 KSPCGLSRVKSLRFLYFDTVNVTEEILE-FFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELE--  230 (324)
Q Consensus       156 ~l~~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~--  230 (324)
                      .+|..+  ++++++|+|.+..++.  +. ..+.++++|++|++.++.....+..  -..++.++++.+..+..+..+.  
T Consensus        22 ~iP~~l--~~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          22 EIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SCCSCS--CSCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             CcCCCC--CCCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence            345443  4689999999877542  11 1257799999999999865544322  1245889999998887665543  


Q ss_pred             --EecCCccEEEEccee
Q 020558          231 --ISCPSLLSFKYFGPE  245 (324)
Q Consensus       231 --i~~p~L~~L~~~~~~  245 (324)
                        -..|+|+.+.+.+..
T Consensus        98 ~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             SEECCTTCCEEEEESCC
T ss_pred             cccccccccccccchhh
Confidence              346999999998764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.39  E-value=0.00025  Score=60.45  Aligned_cols=154  Identities=17%  Similarity=0.128  Sum_probs=78.3

Q ss_pred             CCCCCCCcEEEeeeEEeC------HHH---HHHHHHcCCccceeEeecCCCcc----eE-EEecccCCccEEEEecCCCc
Q 020558          161 LSRVKSLRFLYFDTVNVT------EEI---LEFFINNCPNLDDLRVGRSDNLL----RL-KVVGSLLQLKCLHIDHCNNL  226 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~------~~~---l~~ll~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~i~~c~~l  226 (324)
                      +...++|+.|.+.++...      ...   +...+..|++|++|++.+|.--.    .+ ..-..+++|++|.+.+|.- 
T Consensus        55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-  133 (344)
T d2ca6a1          55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-  133 (344)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-
T ss_pred             HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccc-
Confidence            456788888888766422      122   33445678888888888874211    11 1112347888888887651 


Q ss_pred             ce-----------------EEEecCCccEEEEcceeeE--------EeeCCCCCceEEEEecccCCc--ccceecccccc
Q 020558          227 EE-----------------LEISCPSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGGGHGIG--KGKVIGPIVNY  279 (324)
Q Consensus       227 ~~-----------------l~i~~p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~--~~~~~~~l~~~  279 (324)
                      ..                 .....+.|+.+.+.+....        -.+..++.|+++++.......  ....+.+.+..
T Consensus       134 ~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~  213 (344)
T d2ca6a1         134 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  213 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             cccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcc
Confidence            10                 0113456666665543210        013345666666665411111  11223344556


Q ss_pred             CCCceEEEEEeeecce--ecccCC--CCCCcceeEEEEec
Q 020558          280 FPQLKTLELHVELNEE--ILQFPE--CDLPELRHLMFMLV  315 (324)
Q Consensus       280 ~~~L~~L~l~~~~~~~--~~~~~~--~~~~~L~~L~l~~~  315 (324)
                      +++|+.|.++.+....  ...+..  ..+++|++|+|+.|
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            6666666666554310  011111  45566666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.20  E-value=0.00028  Score=59.22  Aligned_cols=42  Identities=21%  Similarity=0.447  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecC
Q 020558          158 PCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRS  200 (324)
Q Consensus       158 ~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  200 (324)
                      |+.+..+++|++|+|++..+... .......++.|+.+.+.++
T Consensus        94 P~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          94 PPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccchhhhcccccccc-ccccccchhhhcccccccc
Confidence            44456677777777777654321 1112344566666666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0014  Score=54.05  Aligned_cols=149  Identities=17%  Similarity=0.219  Sum_probs=79.3

Q ss_pred             CCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceEEE--ecccCCccEEEEecCCCcceEE----EecC
Q 020558          161 LSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRLKV--VGSLLQLKCLHIDHCNNLEELE----ISCP  234 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~i~~c~~l~~l~----i~~p  234 (324)
                      +.++++|++|++++..+..-. .....+++.++++.+......+.+.-  -..+++|++|.+.++.. ..+.    ...+
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~  129 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLA  129 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCT
T ss_pred             hhccccccccccccccccccc-cccccccccccccccccccccccccchhhcccccCCEEecCCccc-ccccccccchhc
Confidence            445555555555544432110 01123445555555444333332211  12346788888776652 2221    1236


Q ss_pred             CccEEEEcceeeE----EeeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCcce
Q 020558          235 SLLSFKYFGPEIK----LHVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPELR  308 (324)
Q Consensus       235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~  308 (324)
                      +|+++.+.+....    -.+..+++|+.+++......   ......+.++++|+.|.+..+..  ....|.  ..+++|+
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~---~l~~~~f~~l~~L~~l~l~~N~l--~~i~~~~f~~l~~L~  204 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQNRV--AHVHPHAFRDLGRLM  204 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCC
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCccc---ccchhhhccccccchhhhhhccc--cccChhHhhhhhhcc
Confidence            7777777665332    13556778888877652111   11223456888899988887764  223333  6778889


Q ss_pred             eEEEEecc
Q 020558          309 HLMFMLVH  316 (324)
Q Consensus       309 ~L~l~~~~  316 (324)
                      +|.++...
T Consensus       205 ~L~l~~N~  212 (284)
T d1ozna_         205 TLYLFANN  212 (284)
T ss_dssp             EEECCSSC
T ss_pred             cccccccc
Confidence            98886653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.03  E-value=0.00071  Score=52.43  Aligned_cols=105  Identities=10%  Similarity=0.158  Sum_probs=58.8

Q ss_pred             cCCCCCCCCCCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE-EEecccCCccEEEEecCCCcceEEE---
Q 020558          156 KSPCGLSRVKSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL-KVVGSLLQLKCLHIDHCNNLEELEI---  231 (324)
Q Consensus       156 ~l~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~i~~c~~l~~l~i---  231 (324)
                      .+|.++  .+++++|+|++..++...-...+.+.++|++|++.+..-.... ..-...++|++|.+++.. +..+.-   
T Consensus        22 ~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F   98 (192)
T d1w8aa_          22 EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMF   98 (192)
T ss_dssp             SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSS
T ss_pred             ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHH
Confidence            455544  4789999999988753211222466889999999886432211 111234788888887664 444432   


Q ss_pred             -ecCCccEEEEcceeeE-E---eeCCCCCceEEEEec
Q 020558          232 -SCPSLLSFKYFGPEIK-L---HVKNVPQLVDVLIGG  263 (324)
Q Consensus       232 -~~p~L~~L~~~~~~~~-~---~~~~~~~L~~l~l~~  263 (324)
                       +.++|+.|.+.+.... +   .+.++++|+.+++..
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             hCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence             1255555555544321 1   234455555555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.76  E-value=0.0013  Score=55.01  Aligned_cols=44  Identities=23%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             CCCCCCCCCCCcEEEeeeEE-eCHHHHHHHHHcCCccceeEeecCC
Q 020558          157 SPCGLSRVKSLRFLYFDTVN-VTEEILEFFINNCPNLDDLRVGRSD  201 (324)
Q Consensus       157 l~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~  201 (324)
                      +|+.+..+++|++|+|.++. +++. +-.-+.++++|++|+|.++.
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~  112 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTN  112 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEEC
T ss_pred             CChHHhcCccccccccccccccccc-cccccccccccchhhhcccc
Confidence            45567789999999998753 4321 21226789999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=95.75  E-value=5.2e-05  Score=59.66  Aligned_cols=122  Identities=13%  Similarity=0.137  Sum_probs=77.2

Q ss_pred             HHcCCccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEE---EecCCccEEEEcceeeE-E-eeCCCCCceEEE
Q 020558          186 INNCPNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELE---ISCPSLLSFKYFGPEIK-L-HVKNVPQLVDVL  260 (324)
Q Consensus       186 l~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~---i~~p~L~~L~~~~~~~~-~-~~~~~~~L~~l~  260 (324)
                      ++..++|++|++.++. ++.+.--..+++|++|+++++. +..+.   -..++|+.|.+.+.... + .+.++++|+.++
T Consensus        44 l~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          44 LSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred             HhcccccceeECcccC-CCCcccccCCccccChhhcccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            5668999999999873 2222212356899999999875 44332   12367999988876442 1 255688899999


Q ss_pred             EecccCCcccceeccccccCCCceEEEEEeeecceec-ccCC---------CCCCcceeEE
Q 020558          261 IGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEIL-QFPE---------CDLPELRHLM  311 (324)
Q Consensus       261 l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~---------~~~~~L~~L~  311 (324)
                      +.........  -...+..+++|+.|.++.+...... ....         ..+|+|++|.
T Consensus       122 L~~N~i~~~~--~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         122 MSNNKITNWG--EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ESEEECCCHH--HHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccchhcccc--ccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9862211111  0123578999999999987652111 1111         4578888874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.00044  Score=60.60  Aligned_cols=97  Identities=9%  Similarity=0.136  Sum_probs=58.9

Q ss_pred             CCCcEEEeeeEEeCHHHHHHHHHcCCccceeEeecCCCcceE---EE---ecccCCccEEEEecCCCcce---------E
Q 020558          165 KSLRFLYFDTVNVTEEILEFFINNCPNLDDLRVGRSDNLLRL---KV---VGSLLQLKCLHIDHCNNLEE---------L  229 (324)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i---~~~~~~L~~L~i~~c~~l~~---------l  229 (324)
                      ++|+.|++.+..+++.++.+++..+++|+.|+|.+|. ++..   .+   -..+++|++|+++++. +..         +
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHH
Confidence            4678888888888888888888888888888888884 3211   01   1345778888887654 221         1


Q ss_pred             EEecCCccEEEEcceeeE--------EeeCCCCCceEEEEec
Q 020558          230 EISCPSLLSFKYFGPEIK--------LHVKNVPQLVDVLIGG  263 (324)
Q Consensus       230 ~i~~p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~  263 (324)
                      ....++|++|.+.++...        -.+..+++|+++++..
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccc
Confidence            112245666666544221        0234566666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.66  E-value=0.0027  Score=52.67  Aligned_cols=13  Identities=15%  Similarity=0.179  Sum_probs=6.3

Q ss_pred             cCCCceEEEEEee
Q 020558          279 YFPQLKTLELHVE  291 (324)
Q Consensus       279 ~~~~L~~L~l~~~  291 (324)
                      .+++|+.|.++.+
T Consensus       240 ~l~~L~~L~Ls~N  252 (305)
T d1xkua_         240 DHKYIQVVYLHNN  252 (305)
T ss_dssp             TCSSCCEEECCSS
T ss_pred             cccCCCEEECCCC
Confidence            4445555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.97  E-value=0.00089  Score=50.69  Aligned_cols=116  Identities=8%  Similarity=0.012  Sum_probs=61.9

Q ss_pred             CCCCCcEEEeeeEE-eCHHHHHHH---HHcCCccceeEeecCCCcce--EEE---ecccCCccEEEEecCCCcceEEEec
Q 020558          163 RVKSLRFLYFDTVN-VTEEILEFF---INNCPNLDDLRVGRSDNLLR--LKV---VGSLLQLKCLHIDHCNNLEELEISC  233 (324)
Q Consensus       163 ~~~~L~~L~L~~~~-~~~~~l~~l---l~~cp~Le~L~l~~c~~~~~--l~i---~~~~~~L~~L~i~~c~~l~~l~i~~  233 (324)
                      ..|.|++|+|.++. ++++++..+   +..++.|++|++.+|.--..  ..+   -...++|++|++++|. +..     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~-----   86 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTP-----   86 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCH-----
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cch-----
Confidence            45778888887654 777665544   44677788888877642110  000   1123556666666553 111     


Q ss_pred             CCccEEEEcceee-EEeeCCCCCceEEEEecccCCc----ccceeccccccCCCceEEEEEeee
Q 020558          234 PSLLSFKYFGPEI-KLHVKNVPQLVDVLIGGGHGIG----KGKVIGPIVNYFPQLKTLELHVEL  292 (324)
Q Consensus       234 p~L~~L~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~l~~~~~~L~~L~l~~~~  292 (324)
                              .|... .-.+...+.|+++++.......    ....+.+.+...+.|+.|.+++..
T Consensus        87 --------~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          87 --------ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             --------HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             --------HHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                    00000 0024556777777776521111    122355666677888888776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.77  E-value=0.00081  Score=50.83  Aligned_cols=116  Identities=10%  Similarity=0.050  Sum_probs=67.0

Q ss_pred             CCCCCcEEEeeeEE-eCHHHHHHHH---HcCCccceeEeecCCCcce----E-EEecccCCccEEEEecCCCcceEEEec
Q 020558          163 RVKSLRFLYFDTVN-VTEEILEFFI---NNCPNLDDLRVGRSDNLLR----L-KVVGSLLQLKCLHIDHCNNLEELEISC  233 (324)
Q Consensus       163 ~~~~L~~L~L~~~~-~~~~~l~~ll---~~cp~Le~L~l~~c~~~~~----l-~i~~~~~~L~~L~i~~c~~l~~l~i~~  233 (324)
                      ..|.|++|+|.++. ++++++..+.   ..++.|++|++.+|.-...    + ..-...++++.+.+.+|.. .      
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~-~------   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI-S------   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC-C------
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc-c------
Confidence            46889999998864 8888766654   4788899999998842111    0 1112335677776665541 0      


Q ss_pred             CCccEEEEccee-eEEeeCCCCCceEEEEecccCCc---ccceeccccccCCCceEEEEEeee
Q 020558          234 PSLLSFKYFGPE-IKLHVKNVPQLVDVLIGGGHGIG---KGKVIGPIVNYFPQLKTLELHVEL  292 (324)
Q Consensus       234 p~L~~L~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~---~~~~~~~l~~~~~~L~~L~l~~~~  292 (324)
                             -.|.. ..-.+...+.|+.++++......   ....+.+.++..+.|++|.+++..
T Consensus        88 -------~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          88 -------GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             -------HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             -------chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                   00100 00134556777777776422211   112344556678888888876654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.37  E-value=0.019  Score=43.95  Aligned_cols=34  Identities=26%  Similarity=0.069  Sum_probs=16.1

Q ss_pred             cccCCCceEEEEEeeecceecccCC---CCCCcceeEEEE
Q 020558          277 VNYFPQLKTLELHVELNEEILQFPE---CDLPELRHLMFM  313 (324)
Q Consensus       277 ~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~  313 (324)
                      +.++++|++|.|+.+.+   ...+.   ..+++|++|.|+
T Consensus        98 F~~l~~L~~L~L~~N~l---~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQI---SCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             STTCTTCCEEECCSSCC---CEECTTSSTTCTTCCEEECT
T ss_pred             HhCCCcccccccCCccc---cccCHHHhcCCccccccccc
Confidence            34555566665555543   11111   344555555553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.87  E-value=0.099  Score=43.13  Aligned_cols=16  Identities=25%  Similarity=0.268  Sum_probs=10.5

Q ss_pred             CCCCCCCcEEEeeeEE
Q 020558          161 LSRVKSLRFLYFDTVN  176 (324)
Q Consensus       161 ~~~~~~L~~L~L~~~~  176 (324)
                      ...++.|+.+.+.+..
T Consensus       200 ~~~l~~L~~l~l~~n~  215 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNL  215 (353)
T ss_dssp             CTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccc
Confidence            4456777777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.031  Score=41.20  Aligned_cols=14  Identities=14%  Similarity=0.150  Sum_probs=6.9

Q ss_pred             eCCCCCceEEEEec
Q 020558          250 VKNVPQLVDVLIGG  263 (324)
Q Consensus       250 ~~~~~~L~~l~l~~  263 (324)
                      +.++++|+.+++..
T Consensus        76 f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          76 FHFTPRLSRLNLSF   89 (156)
T ss_dssp             GGSCSCCCEEECCS
T ss_pred             ccccccccceeccC
Confidence            33455555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.01  Score=51.47  Aligned_cols=80  Identities=15%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             CCCCCcEEEeeeEEeCHHHHHHH---HHcCCccceeEeecCCCcce-----E--EEecccCCccEEEEecCCCcceE---
Q 020558          163 RVKSLRFLYFDTVNVTEEILEFF---INNCPNLDDLRVGRSDNLLR-----L--KVVGSLLQLKCLHIDHCNNLEEL---  229 (324)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~l---l~~cp~Le~L~l~~c~~~~~-----l--~i~~~~~~L~~L~i~~c~~l~~l---  229 (324)
                      .++++++|.|.++.+++.+++.|   +..||+|++|+|.++. ++.     +  .+.....+|++|++++|. +...   
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~  102 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG  102 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccc
Confidence            47899999999999998766544   5799999999998874 221     1  011123589999999886 4321   


Q ss_pred             -----EEecCCccEEEEcce
Q 020558          230 -----EISCPSLLSFKYFGP  244 (324)
Q Consensus       230 -----~i~~p~L~~L~~~~~  244 (324)
                           -...++|+.|.+.+.
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSS
T ss_pred             cccchhhccccccccccccc
Confidence                 113588999988654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.82  E-value=0.0017  Score=48.86  Aligned_cols=124  Identities=12%  Similarity=0.079  Sum_probs=72.8

Q ss_pred             HHHHHHHHHcCCccceeEeecCCCcceEE---E---ecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCC
Q 020558          179 EEILEFFINNCPNLDDLRVGRSDNLLRLK---V---VGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKN  252 (324)
Q Consensus       179 ~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i---~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~  252 (324)
                      ++.+..+.+++|.|++|++.++..++.-.   +   -...++|++|++++|. +..-..     ..       ..-.+..
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~-----~~-------L~~~l~~   72 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVA-----FA-------LAEMLKV   72 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHH-----HH-------HHHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHH-----HH-------HHHHHhh
Confidence            34578888899999999999875543211   1   1245788888888775 111000     00       0002334


Q ss_pred             CCCceEEEEeccc-CCcccceeccccccCCCceEEEEEeeecceecc-----cCC--CCCCcceeEEEEecc
Q 020558          253 VPQLVDVLIGGGH-GIGKGKVIGPIVNYFPQLKTLELHVELNEEILQ-----FPE--CDLPELRHLMFMLVH  316 (324)
Q Consensus       253 ~~~L~~l~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-----~~~--~~~~~L~~L~l~~~~  316 (324)
                      .+.++.+.+.... .......+.+.+...++|+.++|+.... .+..     +..  ..+++|++|.++...
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n-~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCC-cCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            5667777666522 1112233556677889999988875543 2211     111  578899999986654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=91.10  E-value=0.066  Score=44.29  Aligned_cols=94  Identities=16%  Similarity=0.079  Sum_probs=60.9

Q ss_pred             CccceeEeecCCCcceEEEecccCCccEEEEecCCCcceEEEecCCccEEEEcceeeEEeeCCC-CCceEEEEecccCCc
Q 020558          190 PNLDDLRVGRSDNLLRLKVVGSLLQLKCLHIDHCNNLEELEISCPSLLSFKYFGPEIKLHVKNV-PQLVDVLIGGGHGIG  268 (324)
Q Consensus       190 p~Le~L~l~~c~~~~~l~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~L~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~  268 (324)
                      .+|++|++.++. ++.  ++...++|++|++++. .+..+.-...+|+.|.+.+.... .+..+ +.|+.+++.......
T Consensus        38 ~~l~~LdLs~~~-L~~--lp~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~l~~n~l~-~l~~lp~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          38 RQAHELELNNLG-LSS--LPELPPHLESLVASCN-SLTELPELPQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             HTCSEEECTTSC-CSC--CCSCCTTCSEEECCSS-CCSSCCCCCTTCCEEECCSSCCS-CCCSCCTTCCEEECCSSCCSS
T ss_pred             cCCCEEEeCCCC-CCC--CCCCCCCCCEEECCCC-CCcccccchhhhhhhhhhhcccc-hhhhhcccccccccccccccc
Confidence            578999998874 333  3344578999999854 46666544579999998876543 12333 468888887522111


Q ss_pred             ccceeccccccCCCceEEEEEeeec
Q 020558          269 KGKVIGPIVNYFPQLKTLELHVELN  293 (324)
Q Consensus       269 ~~~~~~~l~~~~~~L~~L~l~~~~~  293 (324)
                      ..    . ...+++|+.|.++.+..
T Consensus       113 lp----~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         113 LP----E-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CC----C-CTTCTTCCEEECCSSCC
T ss_pred             cc----c-hhhhccceeeccccccc
Confidence            11    1 34678999999876653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.35  E-value=0.081  Score=39.26  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             CCCCCCcEEEeeeEEeCHHH---HHHHHHcCCccceeEeecCCCcc-eE----EEecccCCccEEEEecCC
Q 020558          162 SRVKSLRFLYFDTVNVTEEI---LEFFINNCPNLDDLRVGRSDNLL-RL----KVVGSLLQLKCLHIDHCN  224 (324)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~-~l----~i~~~~~~L~~L~i~~c~  224 (324)
                      ...+.|++|+|+++.+++++   +...+..++.|++|++.+|.-.. .+    ..-...++|++|+++++.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            35678999999998888765   45557788999999999884211 00    111234678888887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.32  E-value=0.67  Score=33.50  Aligned_cols=76  Identities=14%  Similarity=0.116  Sum_probs=48.5

Q ss_pred             CCccEEEEccee-e-EE---eeCCCCCceEEEEecccCCcccceeccccccCCCceEEEEEeeecceecccCC--CCCCc
Q 020558          234 PSLLSFKYFGPE-I-KL---HVKNVPQLVDVLIGGGHGIGKGKVIGPIVNYFPQLKTLELHVELNEEILQFPE--CDLPE  306 (324)
Q Consensus       234 p~L~~L~~~~~~-~-~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~  306 (324)
                      ++|+.|.+.+.. . .+   .+.++++|+.+++......   ..-.+.+..+++|+.|+|+.+.+   ..++.  -...+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~---~i~~~~f~~l~~L~~L~Ls~N~l---~~l~~~~~~~~~  104 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---FVAPDAFHFTPRLSRLNLSFNAL---ESLSWKTVQGLS  104 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC---EECTTGGGSCSCCCEEECCSSCC---SCCCSTTTCSCC
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccC---CcccccccccccccceeccCCCC---cccChhhhcccc
Confidence            566667665432 1 22   4678999999999863211   11123456899999999998864   34444  33347


Q ss_pred             ceeEEEEec
Q 020558          307 LRHLMFMLV  315 (324)
Q Consensus       307 L~~L~l~~~  315 (324)
                      |++|+|+..
T Consensus       105 l~~L~L~~N  113 (156)
T d2ifga3         105 LQELVLSGN  113 (156)
T ss_dssp             CCEEECCSS
T ss_pred             ccccccCCC
Confidence            889988654