Citrus Sinensis ID: 020563

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
MELHSIECVPSSDLTDEDEIHHHRPHQFPSISKPHNNCNNNNTSLASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQSPEGGACIPNLCS
cccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHcccccccccccccccccccccccccHHHHHHHHHHccccccccccEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEcccccccccEEEEEEEcccEEEEEEEEccEEcccccccccccccEEEEcccccEEEccccEEEEEEEEEEEEccccccccccccccccc
cccccccEcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccEEEcccccEEEcccHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccEEccccccHHHHHccccccccccccccccEEccHHHHHHHHHHHccccEEccccccEEEEEccccccccccEEEEEEccccccEEEEEEEEccccccEEEEEEEEcccHHHHccEEEEEEEcccccEEEEEEccccHHHcHEEEEcccccEEEcccHHHHHcccccccEEEEEEEEEEccccccccccccccccc
melhsiecvpssdltdedeihhhrphqfpsiskphnncnnnntslasvinpgttsvhellecpvctnsmyppihqchnghtlcstcktrvhnrcptcrqelGDIRCLALEKVAESLElpckymslgcpeifpyysklkheaicnfrpyncpyagsecsivgdiPFLVAHLrddhkvdmhsgctfnhryvksnphevenATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLevggngrkltwegtprsirdshkkvrdshdGLIIQRNMAlffsggdrkelKLRVTGRiwkeqqspeggacipnlcs
melhsiecVPSSDLTDEDEIHHHRPHQFPSISKPHNNCNNNNTSLASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYslevggngrkltwegtprsirdshkkvrdshdgliIQRNmalffsggdrkELKLRVTGriwkeqqspeggacipnlcs
MELHSIECVPSSDLTDEDEIHHHRPHQFPSISKPHnncnnnnTSLASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQSPEGGACIPNLCS
**********************************************SVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWE*****************DGLIIQRNMALFFSGGDRKELKLRVTGRIWK****************
****S*E*************************************************HELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTW*GT**********VRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRI***********CIPNL**
MELHSIECVPSSDLTDEDEIHHHRPHQFPSISKPHNNCNNNNTSLASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQSPEGGACIPNLCS
*****************************************************TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQSPEGGACIPNLCS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELHSIECVPSSDLTDEDEIHHHRPHQFPSISKPHNNCNNNNTSLASVINPGTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQSPEGGACIPNLCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query324 2.2.26 [Sep-21-2011]
Q84JL3326 E3 ubiquitin-protein liga yes no 0.990 0.984 0.843 1e-160
Q9STN8327 E3 ubiquitin-protein liga no no 0.981 0.972 0.783 1e-151
Q8S3N1309 E3 ubiquitin-protein liga no no 0.904 0.948 0.824 1e-150
Q9M2P4308 E3 ubiquitin-protein liga no no 0.790 0.831 0.824 1e-128
P93748305 Putative E3 ubiquitin-pro no no 0.796 0.845 0.802 1e-127
Q86MW9371 E3 ubiquitin-protein liga N/A no 0.783 0.684 0.351 8e-43
Q7ZVG6282 E3 ubiquitin-protein liga yes no 0.762 0.875 0.357 1e-38
Q920M9282 E3 ubiquitin-protein liga yes no 0.762 0.875 0.357 1e-38
P61092282 E3 ubiquitin-protein liga yes no 0.762 0.875 0.357 1e-38
Q8IUQ4282 E3 ubiquitin-protein liga yes no 0.762 0.875 0.357 2e-38
>sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1 Back     alignment and function desciption
 Score =  563 bits (1452), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/326 (84%), Positives = 292/326 (89%), Gaps = 5/326 (1%)

Query: 1   MELHSIECVPSSDLTDEDEIHHHRPHQFPSISKPHNNCNNNNTSLA--SVINPGTTSVHE 58
           M+L S++C  + D+TD++EIH  R H + S+SK H+  NN     A  S + P TTSVHE
Sbjct: 1   MDLDSMDCTSTMDVTDDEEIHQDR-HSYASVSKHHHTNNNTTNVNAAASGLLPTTTSVHE 59

Query: 59  LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLEL 118
           LLECPVCTNSMYPPIHQCHNGHTLCSTCK RVHNRCPTCRQELGDIRCLALEKVAESLEL
Sbjct: 60  LLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLEL 119

Query: 119 PCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDM 178
           PCK+MSLGCPEIFPYYSKLKHE +CNFRPY+CPYAGSECS+ GDIPFLVAHLRDDHKVDM
Sbjct: 120 PCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHKVDM 179

Query: 179 HSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE 238
           HSGCTFNHRYVKSNP EVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE
Sbjct: 180 HSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE 239

Query: 239 TEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKEL 298
           TEARNY YSLEVGG GRKL WEGTPRS+RDSH+KVRDSHDGLIIQRNMALFFSGGDRKEL
Sbjct: 240 TEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKEL 299

Query: 299 KLRVTGRIWKEQQSP--EGGACIPNL 322
           KLRVTGRIWKEQQ     GGACIPNL
Sbjct: 300 KLRVTGRIWKEQQQSGEGGGACIPNL 325
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9STN8|SINA4_ARATH E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1 Back     alignment and function description
>sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2 Back     alignment and function description
>sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1 Back     alignment and function description
>sp|P93748|SINA1_ARATH Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1 Back     alignment and function description
>sp|Q86MW9|SINA_SCHMA E3 ubiquitin-protein ligase sina OS=Schistosoma mansoni GN=SINA PE=1 SV=1 Back     alignment and function description
>sp|Q7ZVG6|SIAH1_DANRE E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2 Back     alignment and function description
>sp|Q920M9|SIAH1_RAT E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2 Back     alignment and function description
>sp|P61092|SIA1A_MOUSE E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1 Back     alignment and function description
>sp|Q8IUQ4|SIAH1_HUMAN E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
224067986330 predicted protein [Populus trichocarpa] 0.993 0.975 0.885 1e-166
255564689326 Ubiquitin ligase SINAT3, putative [Ricin 0.996 0.990 0.880 1e-166
224130546330 predicted protein [Populus trichocarpa] 0.993 0.975 0.879 1e-166
255564693326 Ubiquitin ligase SINAT3, putative [Ricin 0.996 0.990 0.877 1e-165
379055945324 E3 ubiquitin ligase [Lotus japonicus] 1.0 1.0 0.858 1e-163
357436487333 Ubiquitin ligase SINAT3 [Medicago trunca 0.996 0.969 0.841 1e-163
224120812332 predicted protein [Populus trichocarpa] 0.993 0.969 0.856 1e-162
356516063327 PREDICTED: E3 ubiquitin-protein ligase S 0.996 0.987 0.844 1e-161
297821060318 hypothetical protein ARALYDRAFT_486680 [ 0.972 0.990 0.858 1e-160
363807930323 uncharacterized protein LOC100810573 [Gl 0.996 1.0 0.842 1e-160
>gi|224067986|ref|XP_002302632.1| predicted protein [Populus trichocarpa] gi|118486216|gb|ABK94950.1| unknown [Populus trichocarpa] gi|222844358|gb|EEE81905.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/332 (88%), Positives = 304/332 (91%), Gaps = 10/332 (3%)

Query: 1   MELHSIECVPSSDLTDEDEIHHHRPHQ-FPSISKPHNNCNNNNTS-------LASVINPG 52
           MEL SIECVPS DLTDEDEIHHH     FPS+SKPH     NN +       +AS I+  
Sbjct: 1   MELDSIECVPSLDLTDEDEIHHHHHLHHFPSVSKPHTTTTTNNNNSNSNSNTVASAIH-- 58

Query: 53  TTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKV 112
           TTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRV NRCPTCRQELGDIRCLALEKV
Sbjct: 59  TTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVQNRCPTCRQELGDIRCLALEKV 118

Query: 113 AESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRD 172
           AESLELPCKYMSLGCPEIFPYYSKLKHE +CNFRPY+CPYAGSEC+IVGDIPFLVAHLRD
Sbjct: 119 AESLELPCKYMSLGCPEIFPYYSKLKHETLCNFRPYSCPYAGSECAIVGDIPFLVAHLRD 178

Query: 173 DHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFL 232
           DHKVDMHSGCTFNHRYVKSNP EVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFL
Sbjct: 179 DHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFL 238

Query: 233 RFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSG 292
           RFMGDE EARNY+YSLEVGGNGRKL WEGTPRSIRDSH+KVRDSHDGLIIQRNMALFFSG
Sbjct: 239 RFMGDEAEARNYSYSLEVGGNGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSG 298

Query: 293 GDRKELKLRVTGRIWKEQQSPEGGACIPNLCS 324
           GDRKELKLRVTGRIWKEQQ+PEGGACIPNLCS
Sbjct: 299 GDRKELKLRVTGRIWKEQQNPEGGACIPNLCS 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564689|ref|XP_002523339.1| Ubiquitin ligase SINAT3, putative [Ricinus communis] gi|223537427|gb|EEF39055.1| Ubiquitin ligase SINAT3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224130546|ref|XP_002320867.1| predicted protein [Populus trichocarpa] gi|222861640|gb|EEE99182.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564693|ref|XP_002523341.1| Ubiquitin ligase SINAT3, putative [Ricinus communis] gi|223537429|gb|EEF39057.1| Ubiquitin ligase SINAT3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|379055945|emb|CCG06554.1| E3 ubiquitin ligase [Lotus japonicus] Back     alignment and taxonomy information
>gi|357436487|ref|XP_003588519.1| Ubiquitin ligase SINAT3 [Medicago truncatula] gi|158516792|gb|ABW70159.1| SINA1 [Medicago truncatula] gi|355477567|gb|AES58770.1| Ubiquitin ligase SINAT3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224120812|ref|XP_002318423.1| predicted protein [Populus trichocarpa] gi|222859096|gb|EEE96643.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356516063|ref|XP_003526716.1| PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max] Back     alignment and taxonomy information
>gi|297821060|ref|XP_002878413.1| hypothetical protein ARALYDRAFT_486680 [Arabidopsis lyrata subsp. lyrata] gi|297324251|gb|EFH54672.1| hypothetical protein ARALYDRAFT_486680 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|363807930|ref|NP_001242196.1| uncharacterized protein LOC100810573 [Glycine max] gi|255636330|gb|ACU18504.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
TAIR|locus:2076810326 AT3G61790 [Arabidopsis thalian 0.990 0.984 0.843 3.5e-155
TAIR|locus:2137395327 AT4G27880 [Arabidopsis thalian 0.993 0.984 0.783 2.8e-144
TAIR|locus:2095848308 SINAT2 "seven in absentia of A 0.787 0.827 0.827 9.2e-123
TAIR|locus:2064642305 AT2G41980 [Arabidopsis thalian 0.796 0.845 0.802 1.5e-120
TAIR|locus:2091581220 SINA2 "AT3G13672" [Arabidopsis 0.509 0.75 0.607 4.2e-56
MGI|MGI:108064282 Siah1a "seven in absentia 1A" 0.756 0.868 0.370 2e-40
RGD|620449282 Siah1a "seven in absentia 1A" 0.756 0.868 0.370 2e-40
UNIPROTKB|Q920M9282 Siah1 "E3 ubiquitin-protein li 0.756 0.868 0.370 2e-40
ZFIN|ZDB-GENE-010319-31282 siah1 "seven in absentia homol 0.756 0.868 0.370 2e-40
UNIPROTKB|F1N5G3313 SIAH1 "Uncharacterized protein 0.882 0.913 0.338 2.6e-40
TAIR|locus:2076810 AT3G61790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1513 (537.7 bits), Expect = 3.5e-155, P = 3.5e-155
 Identities = 275/326 (84%), Positives = 292/326 (89%)

Query:     1 MELHSIECVPSSDLTDEDEIHHHRPHQFPSISKPHXXXXXXXT--SLASVINPGTTSVHE 58
             M+L S++C  + D+TD++EIH  R H + S+SK H          + AS + P TTSVHE
Sbjct:     1 MDLDSMDCTSTMDVTDDEEIHQDR-HSYASVSKHHHTNNNTTNVNAAASGLLPTTTSVHE 59

Query:    59 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLEL 118
             LLECPVCTNSMYPPIHQCHNGHTLCSTCK RVHNRCPTCRQELGDIRCLALEKVAESLEL
Sbjct:    60 LLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLEL 119

Query:   119 PCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDM 178
             PCK+MSLGCPEIFPYYSKLKHE +CNFRPY+CPYAGSECS+ GDIPFLVAHLRDDHKVDM
Sbjct:   120 PCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHKVDM 179

Query:   179 HSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE 238
             HSGCTFNHRYVKSNP EVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE
Sbjct:   180 HSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE 239

Query:   239 TEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKEL 298
             TEARNY YSLEVGG GRKL WEGTPRS+RDSH+KVRDSHDGLIIQRNMALFFSGGDRKEL
Sbjct:   240 TEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKEL 299

Query:   299 KLRVTGRIWKEQQ-SPEGG-ACIPNL 322
             KLRVTGRIWKEQQ S EGG ACIPNL
Sbjct:   300 KLRVTGRIWKEQQQSGEGGGACIPNL 325
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS
GO:0007275 "multicellular organismal development" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016567 "protein ubiquitination" evidence=IEA
TAIR|locus:2137395 AT4G27880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095848 SINAT2 "seven in absentia of Arabidopsis 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064642 AT2G41980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091581 SINA2 "AT3G13672" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:108064 Siah1a "seven in absentia 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620449 Siah1a "seven in absentia 1A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q920M9 Siah1 "E3 ubiquitin-protein ligase SIAH1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010319-31 siah1 "seven in absentia homolog 1 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5G3 SIAH1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84JL3SINA3_ARATH6, ., 3, ., 2, ., -0.84350.99070.9846yesno
Q8S3N1SINA5_ARATH6, ., 3, ., 2, ., -0.82450.90430.9482nono
Q9STN8SINA4_ARATH6, ., 3, ., 2, ., -0.78310.98140.9724nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
pfam03145198 pfam03145, Sina, Seven in absentia protein family 4e-86
cd03829127 cd03829, Sina, Seven in absentia (Sina) protein fa 4e-69
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 7e-04
pfam05605209 pfam05605, Di19, Drought induced 19 protein (Di19) 0.003
>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family Back     alignment and domain information 
 Score =  256 bits (657), Expect = 4e-86
 Identities = 88/200 (44%), Positives = 116/200 (58%), Gaps = 2/200 (1%)

Query: 104 IRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDI 163
           IR LA+EKVA  +  PCK+ +LGCP   P   K  HE  C ++PY CP  G++C   GD 
Sbjct: 1   IRNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDE 60

Query: 164 PFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLG 223
             L+ HL  DHKV    G  F+  Y+ +  + V   TW++  F CFG++F L+ E + LG
Sbjct: 61  DDLMPHLTADHKVITTEGGEFDIVYLAAAVNLVGAPTWVMVQFSCFGRHFNLYLEKYDLG 120

Query: 224 MAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQ 283
              +Y A ++ +G+  EA N+ Y LE+GGN RKLTW+  PRSIRD HK   D  D LI  
Sbjct: 121 GTQMYFAVIQLIGERKEAENFAYELELGGNRRKLTWQAFPRSIRDDHKFAIDGRDCLIFL 180

Query: 284 RNMALFFSGGDRKELKLRVT 303
           RN A FF+      L  RVT
Sbjct: 181 RNAARFFAEDKN--LHYRVT 198

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198
>gnl|CDD|239753 cd03829, Sina, Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|218654 pfam05605, Di19, Drought induced 19 protein (Di19) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 324
KOG3002299 consensus Zn finger protein [General function pred 100.0
PF03145198 Sina: Seven in absentia protein family; InterPro: 100.0
cd03829127 Sina Seven in absentia (Sina) protein family, C-te 100.0
KOG0297 391 consensus TNF receptor-associated factor [Signal t 99.26
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 98.48
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 98.39
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.37
smart0050463 Ubox Modified RING finger domain. Modified RING fi 98.34
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 98.26
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.24
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.09
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.07
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.04
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.95
PF0217660 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 97.9
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.84
PHA02929238 N1R/p28-like protein; Provisional 97.77
PF1463444 zf-RING_5: zinc-RING finger domain 97.76
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.7
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.65
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 97.64
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.48
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.43
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.37
PHA02926242 zinc finger-like protein; Provisional 97.32
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.14
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 97.05
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.02
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.02
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 96.96
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.75
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 96.74
PLN03086567 PRLI-interacting factor K; Provisional 96.62
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 96.34
KOG4159398 consensus Predicted E3 ubiquitin ligase [Posttrans 96.27
PF0217660 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 95.75
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 95.7
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 95.56
PLN03086567 PRLI-interacting factor K; Provisional 95.45
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 95.4
COG5222427 Uncharacterized conserved protein, contains RING Z 95.21
KOG2660331 consensus Locus-specific chromosome binding protei 95.07
COG5152259 Uncharacterized conserved protein, contains RING a 94.94
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 94.63
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 94.4
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 93.38
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 93.16
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 92.93
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 92.87
COG5175 480 MOT2 Transcriptional repressor [Transcription] 92.65
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 91.99
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 90.92
KOG4739233 consensus Uncharacterized protein involved in syna 90.68
COG5236 493 Uncharacterized conserved protein, contains RING Z 89.76
KOG4367 699 consensus Predicted Zn-finger protein [Function un 89.75
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 89.61
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 89.0
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 88.94
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 88.87
KOG1002791 consensus Nucleotide excision repair protein RAD16 87.88
PF04641260 Rtf2: Rtf2 RING-finger 85.78
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 85.46
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 84.86
KOG3161 861 consensus Predicted E3 ubiquitin ligase [Posttrans 84.04
KOG3039303 consensus Uncharacterized conserved protein [Funct 83.88
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 83.49
PF0719170 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 83.16
KOG4185296 consensus Predicted E3 ubiquitin ligase [Posttrans 82.47
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 82.05
PF1390924 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W 80.38
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-55  Score=416.21  Aligned_cols=258  Identities=46%  Similarity=0.837  Sum_probs=244.0

Q ss_pred             CCcCCCCeeeecccccccccccccccCCceecccccccccCCCCCcccccCcccchHHHHHhhhccccCCCCCCCCCccc
Q 020563           52 GTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIF  131 (324)
Q Consensus        52 ~~~~l~~~L~CpIC~~~l~~Pi~qC~~GH~~C~~C~~~~~~~CP~Cr~~~~~~rn~ale~~l~~l~v~C~~~~~GC~~~~  131 (324)
                      ....+.++|+||||++.+++||+||.|||+.|++|+.++.++||.||.+++.+|+++||++++++.++|||+.+||++.+
T Consensus        41 ~~~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~  120 (299)
T KOG3002|consen   41 VTLLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSF  120 (299)
T ss_pred             ccccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceee
Confidence            55678899999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CccchhhhhcccCCCccCCCCCCCCCccccChhHHHHHhhhcCCCCCcccceeEEEEeccCCCcccccceEEEEeeecCc
Q 020563          132 PYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQ  211 (324)
Q Consensus       132 ~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~~~G~~~~~~f~~s~~~~v~~~~w~l~v~~cfg~  211 (324)
                      +|.+..+||+.|.|+|+.||.+|..|+|.|.+++|..|++..|+.+++.+..++++|..++++.....+|++.+..|+|+
T Consensus       121 ~Y~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (299)
T KOG3002|consen  121 PYGEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGR  200 (299)
T ss_pred             ccccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcE
Confidence            99999999999999999999999999999999999999999999988878888899999999988899998777779999


Q ss_pred             eeEEEEeeeeeCC-ccEEEEEEEEecCccccCCcEEEEEEeeCCceEEEEeecceecccccccccCCCceEEecCcccee
Q 020563          212 YFCLHFEAFQLGM-APVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFF  290 (324)
Q Consensus       212 ~F~l~~~~~~~~~-~~v~~a~v~~iG~~~~a~~FsY~Lei~~~~r~L~~es~p~si~~~~~~~~~~~D~L~i~~~~~~~f  290 (324)
                      .|++++..+..+. .++|+++++++|++++|++|+|+|++++++|+|+||++|+|+++.+...++..|||+||.+++++|
T Consensus       201 ~~~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~fsy~L~~~~~~~klt~~s~~~s~~~kvs~~~p~~dfm~ip~~~~~~~  280 (299)
T KOG3002|consen  201 EFGLLFEVQCFREPHGVYVTVNRIAPSAPEAGEFSYSLALGGSGRKLTWQSPPRSIIQKVSKVRPEDDFMLIPRSLLCLF  280 (299)
T ss_pred             EEeeeeeehhhcCCCceEEEeehhccCCCcccccceeeecCCCCceEeecCCcceeecccceeccCCCceeccHHHhhcc
Confidence            9999999988754 599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeEEEEEEEEeecc
Q 020563          291 SGGDRKELKLRVTGRIWKEQ  310 (324)
Q Consensus       291 ~~~~~~~l~l~V~~~i~~~~  310 (324)
                      ..+ .++|.|++++++|+++
T Consensus       281 ~~~-~~~l~i~~~~~~~~~~  299 (299)
T KOG3002|consen  281 SLL-KMELKIRVTGRVQEEI  299 (299)
T ss_pred             ccc-CCceeeccchhhhccC
Confidence            764 4599999999999864

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila Back     alignment and domain information
>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
2a25_A193 Crystal Structure Of Siah1 Sbd Bound To The Peptide 1e-21
1k2f_A190 Siah, Seven In Absentia Homolog Length = 190 6e-21
2an6_A191 Protein-Peptide Complex Length = 191 6e-21
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide Ekpaavvapittg From Sip Length = 193 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 5/193 (2%)
Query: 112 VAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLR 171
           VA S+  PCKY S GC    P+  K  HE +C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 172 DDHKVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQ-LGMAPVYMA 230
             HK  + +    +  ++ ++ +      W++ +  CFG +F L  E  +       + A
Sbjct: 61  HQHK-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFA 118
Query: 231 FLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFF 290
            ++ +G   +A N+ Y LE+ G+ R+LTWE TPRSI +       + D L+   ++A  F
Sbjct: 119 IVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLF 178
Query: 291 SGGDRKELKLRVT 303
           +  +   L + VT
Sbjct: 179 A--ENGNLGINVT 189
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog Length = 190 Back     alignment and structure
>pdb|2AN6|A Chain A, Protein-Peptide Complex Length = 191 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
2a25_A193 Ubiquitin ligase SIAH1; protein-peptide complex, l 2e-60
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 1e-08
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 4e-07
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 2e-06
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 8e-06
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 3e-05
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 3e-05
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 5e-05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 9e-05
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 1e-04
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 2e-04
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 2e-04
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 2e-04
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 4e-04
1z6u_A150 NP95-like ring finger protein isoform B; structura 5e-04
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 5e-04
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 9e-04
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193 Back     alignment and structure
 Score =  190 bits (484), Expect = 2e-60
 Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 7/194 (3%)

Query: 112 VAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLR 171
           VA S+  PCKY S GC    P+  K  HE +C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 172 DDHK-VDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQ-LGMAPVYM 229
             HK +    G          + +      W+  +  CFG +F L  E  +       + 
Sbjct: 61  HQHKSITTLQGEDIVFLAT--DINLPGAVDWV-MMQSCFGFHFMLVLEKQEKYDGHQQFF 117

Query: 230 AFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALF 289
           A ++ +G   +A N+ Y LE+ G+ R+LTWE TPRSI +       + D L+   ++A  
Sbjct: 118 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 177

Query: 290 FSGGDRKELKLRVT 303
           F+  +   L + VT
Sbjct: 178 FA--ENGNLGINVT 189
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
2a25_A193 Ubiquitin ligase SIAH1; protein-peptide complex, l 100.0
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 99.83
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 99.61
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 99.56
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 99.55
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 99.08
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 98.99
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.96
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.95
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.94
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 98.92
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.91
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 98.89
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 98.89
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.87
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.83
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.83
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 98.81
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.81
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.79
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 98.79
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.76
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 98.76
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.76
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.74
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 98.72
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 98.71
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 98.71
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.69
1z6u_A150 NP95-like ring finger protein isoform B; structura 98.69
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.66
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.66
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 98.66
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 98.65
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 98.6
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.6
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.58
2ect_A78 Ring finger protein 126; metal binding protein, st 98.56
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 98.55
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 98.52
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.52
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.51
2f42_A179 STIP1 homology and U-box containing protein 1; cha 98.46
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.44
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.38
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.38
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 98.35
2ea5_A68 Cell growth regulator with ring finger domain prot 98.34
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 98.34
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 98.28
2ecm_A55 Ring finger and CHY zinc finger domain- containing 98.28
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.27
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 98.25
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.15
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.14
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 98.06
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 98.04
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 97.87
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 97.86
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.83
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.74
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 97.74
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 97.69
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 97.61
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 97.53
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 97.43
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 97.36
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 97.29
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 96.93
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 96.89
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 96.6
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 96.51
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 96.25
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 95.83
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 95.16
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 95.09
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 94.01
2cs3_A93 Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s 93.58
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 91.3
2yt9_A95 Zinc finger-containing protein 1; C2H2, structural 90.68
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 90.46
2eod_A66 TNF receptor-associated factor 4; zinc binding, NF 89.66
2jun_A101 Midline-1; B-BOX, TRIM, ring finger, alternative s 89.11
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 88.68
1wjp_A107 Zinc finger protein 295; ZF-C2H2 domain, zinc bind 87.49
2dlq_A124 GLI-kruppel family member HKR3; ZF-C2H2 domain, st 85.57
2ee8_A106 Protein ODD-skipped-related 2; zinc binding, ZF-C2 82.72
2rpc_A155 Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr 81.6
2dmd_A96 Zinc finger protein 64, isoforms 1 and 2; ZNF338, 80.26
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Back     alignment and structure
Probab=100.00  E-value=6.7e-44  Score=318.80  Aligned_cols=190  Identities=32%  Similarity=0.646  Sum_probs=131.7

Q ss_pred             HhhhccccCCCCCCCCCcccCccchhhhhcccCCCccCCCCCCCCCccccChhHHHHHhhhcCCC-CCcccceeEEEEec
Q 020563          112 VAESLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKV-DMHSGCTFNHRYVK  190 (324)
Q Consensus       112 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~-~~~~G~~~~~~f~~  190 (324)
                      +++++++||+|+.+||.+.++|.++.+||+.|+|+||.||.+|.+|+|+|+.++|..|++.+|++ .+++|+++  +|++
T Consensus         1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i--~f~~   78 (193)
T 2a25_A            1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDI--VFLA   78 (193)
T ss_dssp             -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEE--EEEE
T ss_pred             CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceE--EEEe
Confidence            47899999999999999999999999999999999999999888899999999999999999997 56788865  5888


Q ss_pred             cCCCcccccceEEEEeeecCceeEEEEeeeeeCC-ccEEEEEEEEecCccccCCcEEEEEEeeCCceEEEEeecceeccc
Q 020563          191 SNPHEVENATWMLTVFHCFGQYFCLHFEAFQLGM-APVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDS  269 (324)
Q Consensus       191 s~~~~v~~~~w~l~v~~cfg~~F~l~~~~~~~~~-~~v~~a~v~~iG~~~~a~~FsY~Lei~~~~r~L~~es~p~si~~~  269 (324)
                      ++.++.+..+|++ +++|||++|+|++++++.++ .++|+++|++||++++|++|+|+|++.+++|+|+||++|+|++++
T Consensus        79 ~~~~l~~~~~~~~-v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~  157 (193)
T 2a25_A           79 TDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEG  157 (193)
T ss_dssp             ECCC----CEEEE-EEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTC
T ss_pred             cccccccceeEEE-EEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhc
Confidence            8887777789975 89999999999999998764 577888899999999999999999999999999999999999999


Q ss_pred             ccccccCCCceEEecCccceeeCCCceeeEEEEEEEE
Q 020563          270 HKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRI  306 (324)
Q Consensus       270 ~~~~~~~~D~L~i~~~~~~~f~~~~~~~l~l~V~~~i  306 (324)
                      +.+++++.|||+||++|+++|+++  ++|+|+|++..
T Consensus       158 ~~~~~~~~d~L~ip~~~~~~f~~~--~~L~l~v~I~~  192 (193)
T 2a25_A          158 IATAIMNSDCLVFDTSIAQLFAEN--GNLGINVTISM  192 (193)
T ss_dssp             SHHHHHTTCSEEEEHHHHHHHCSS--SEEEEEEEEEE
T ss_pred             ccccccCCCEEEEcHHHHHhhcCC--CeEEEEEEEEe
Confidence            999999999999999999999774  57999996653
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Back     alignment and structure
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 324
d1k2fa_190 b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous 2e-64
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 1e-06
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 2e-05
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 5e-04
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 0.002
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  199 bits (508), Expect = 2e-64
 Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 115 SLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDH 174
           S+  PCKY S GC    P+  K +HE +C FRPY+CP  G+ C   G +  ++ HL   H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 175 KVDMHSGCTFNHRYVKSNPHEVENATWMLTVFHCFGQYFCLHFEAFQLG-MAPVYMAFLR 233
           K  + +    +  ++ ++ +      W++ +  CFG +F L  E  +       + A ++
Sbjct: 61  K-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 118

Query: 234 FMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGG 293
            +G   +A N+ Y LE+ G+ R+LTWE TPRSI +       + D L+   ++A  F+  
Sbjct: 119 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA-- 176

Query: 294 DRKELKLRVT 303
           +   L + VT
Sbjct: 177 ENGNLGINVT 186
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
d1k2fa_190 SIAH, seven in absentia homolog {Mouse (Mus muscul 100.0
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.99
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.97
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.96
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.89
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.89
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.82
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.62
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.49
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.43
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.42
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.42
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.34
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.26
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.73
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 97.38
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.23
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 95.98
d1wfpa_74 Zinc finger A20 and AN1 domains containing protein 87.6
d2cs3a180 Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ 85.16
d1zfda_32 SWI5 zinc-finger domains {Baker's yeast (Saccharom 84.8
d1ubdc428 Ying-yang 1 (yy1, zinc finger domain) {Human (Homo 83.16
d2jnea171 Hypothetical protein YfgJ {Escherichia coli [TaxId 82.28
d1sp2a_31 Transcription factor sp1 {Human (Homo sapiens) [Ta 81.62
d2glia330 Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 80.84
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6e-43  Score=309.78  Aligned_cols=187  Identities=31%  Similarity=0.607  Sum_probs=169.5

Q ss_pred             hccccCCCCCCCCCcccCccchhhhhcccCCCccCCCCCCCCCccccChhHHHHHhhhcCCCCCcccceeEEEEeccCCC
Q 020563          115 SLELPCKYMSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPH  194 (324)
Q Consensus       115 ~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~~~G~~~~~~f~~s~~~  194 (324)
                      ++++||+|++.||++++++.++..||++|+|+|+.||.++.+|+|+|..++|..|++.+|++... ...+++.|..++.+
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~-~~~~~~~~~~~~~~   79 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITT-LQGEDIVFLATDIN   79 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEE-EESSEEEEEECCTT
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccc-cCccceEEeeeccc
Confidence            47899999999999999999999999999999999999888999999999999999999997542 23345668888887


Q ss_pred             cccccceEEEEeeecCceeEEEEeeeeeC-CccEEEEEEEEecCccccCCcEEEEEEeeCCceEEEEeecceeccccccc
Q 020563          195 EVENATWMLTVFHCFGQYFCLHFEAFQLG-MAPVYMAFLRFMGDETEARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKV  273 (324)
Q Consensus       195 ~v~~~~w~l~v~~cfg~~F~l~~~~~~~~-~~~v~~a~v~~iG~~~~a~~FsY~Lei~~~~r~L~~es~p~si~~~~~~~  273 (324)
                      .+....|++ ++.|||++|+|+++++.++ ..++|+|+|+++|++++|++|+|+|++++++|+|+||++|+|++++...+
T Consensus        80 ~~~~~~~v~-~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f~Yel~l~~~~r~l~~~~~~~si~e~~~~~  158 (190)
T d1k2fa_          80 LPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATA  158 (190)
T ss_dssp             CTTCCEEEE-EEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHH
T ss_pred             cccceeEEE-EEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCccEEEEecCCCceEEEeccccccccccccc
Confidence            777778875 8999999999999999875 46899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceEEecCccceeeCCCceeeEEEEEEE
Q 020563          274 RDSHDGLIIQRNMALFFSGGDRKELKLRVTGR  305 (324)
Q Consensus       274 ~~~~D~L~i~~~~~~~f~~~~~~~l~l~V~~~  305 (324)
                      +++.|||+||+++|++|++  +++|+|+|++-
T Consensus       159 ~~~~d~lvi~~~~~~~F~~--~g~L~l~v~I~  188 (190)
T d1k2fa_         159 IMNSDCLVFDTSIAQLFAE--NGNLGINVTIS  188 (190)
T ss_dssp             HHTTCSEEEEHHHHHHHCB--TTBEEEEEEEE
T ss_pred             cCCCCEEEECHHHHhhccc--CCcEEEEEEEE
Confidence            9999999999999999986  56899999764
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure